Query 023668
Match_columns 279
No_of_seqs 242 out of 1239
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 05:45:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023668.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023668hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03019 carbonic anhydrase 100.0 1.1E-80 2.3E-85 577.5 26.6 277 2-279 51-330 (330)
2 PLN03014 carbonic anhydrase 100.0 1.1E-75 2.3E-80 546.5 26.4 263 17-279 71-336 (347)
3 PLN00416 carbonate dehydratase 100.0 1.7E-67 3.7E-72 479.7 26.2 255 24-278 1-256 (258)
4 PLN03006 carbonate dehydratase 100.0 1.7E-63 3.7E-68 459.0 23.3 242 32-275 38-283 (301)
5 PLN02154 carbonic anhydrase 100.0 6.6E-54 1.4E-58 393.3 22.4 206 67-273 71-276 (290)
6 PRK10437 carbonic anhydrase; P 100.0 6.7E-54 1.5E-58 382.4 21.0 196 71-275 3-199 (220)
7 cd00884 beta_CA_cladeB Carboni 100.0 3.8E-54 8.3E-59 377.2 18.7 189 78-267 1-190 (190)
8 KOG1578 Predicted carbonic anh 100.0 5.9E-54 1.3E-58 386.5 14.8 256 4-271 6-261 (276)
9 cd00883 beta_CA_cladeA Carboni 100.0 4E-53 8.6E-58 368.5 18.5 180 79-267 1-182 (182)
10 PRK15219 carbonic anhydrase; P 100.0 3.7E-52 8E-57 376.8 20.5 189 66-267 51-244 (245)
11 COG0288 CynT Carbonic anhydras 100.0 3.5E-52 7.6E-57 368.9 19.5 199 70-275 2-203 (207)
12 cd03378 beta_CA_cladeC Carboni 100.0 9E-48 2E-52 326.3 16.8 150 68-267 1-154 (154)
13 PF00484 Pro_CA: Carbonic anhy 100.0 9.5E-44 2E-48 299.9 13.6 152 105-264 1-153 (153)
14 cd00382 beta_CA Carbonic anhyd 100.0 3E-42 6.6E-47 281.2 14.2 119 101-267 1-119 (119)
15 cd03379 beta_CA_cladeD Carboni 100.0 2.8E-39 6.2E-44 271.1 13.2 142 101-267 1-142 (142)
16 KOG1578 Predicted carbonic anh 98.2 3E-08 6.4E-13 90.6 -6.0 193 75-270 3-252 (276)
17 PF10070 DUF2309: Uncharacteri 62.0 20 0.00044 38.3 6.6 37 235-271 541-583 (788)
18 COG1254 AcyP Acylphosphatases 58.6 8.3 0.00018 30.1 2.3 19 250-268 30-48 (92)
19 cd04321 ScAspRS_mt_like_N ScAs 36.5 48 0.001 24.8 3.4 26 249-274 1-28 (86)
20 PF02845 CUE: CUE domain; Int 35.8 1.1E+02 0.0024 19.7 4.7 41 30-79 2-42 (42)
21 PF00355 Rieske: Rieske [2Fe-2 35.2 13 0.00029 28.0 0.1 16 251-266 65-80 (97)
22 PRK14066 exodeoxyribonuclease 34.9 66 0.0014 24.1 3.9 25 24-48 1-27 (75)
23 PF04019 DUF359: Protein of un 34.4 1.6E+02 0.0035 24.1 6.4 79 97-183 6-84 (121)
24 PRK11440 putative hydrolase; P 32.1 92 0.002 26.6 4.9 46 121-176 90-135 (188)
25 PF00009 GTP_EFTU: Elongation 31.7 29 0.00064 29.4 1.7 13 162-174 3-15 (188)
26 cd03528 Rieske_RO_ferredoxin R 28.7 22 0.00047 26.9 0.3 16 250-265 60-75 (98)
27 cd03478 Rieske_AIFL_N AIFL (ap 28.3 19 0.00042 27.3 -0.0 15 251-265 60-74 (95)
28 PRK14432 acylphosphatase; Prov 28.1 44 0.00096 25.9 2.0 19 250-268 28-46 (93)
29 cd01891 TypA_BipA TypA (tyrosi 28.0 39 0.00084 28.7 1.9 13 162-174 2-14 (194)
30 PF08184 Cuticle_2: Cuticle pr 27.9 29 0.00064 24.0 0.8 13 253-265 7-19 (59)
31 PF05952 ComX: Bacillus compet 27.7 61 0.0013 23.2 2.4 24 232-255 6-29 (57)
32 PF08822 DUF1804: Protein of u 27.3 1.5E+02 0.0033 25.7 5.3 54 27-81 106-159 (165)
33 PRK14440 acylphosphatase; Prov 26.9 50 0.0011 25.4 2.1 19 250-268 29-47 (90)
34 COG3002 Uncharacterized protei 26.5 1.4E+02 0.0031 31.5 5.7 19 252-270 626-644 (880)
35 PRK14430 acylphosphatase; Prov 26.3 50 0.0011 25.5 2.0 18 250-267 30-47 (92)
36 PF00561 Abhydrolase_1: alpha/ 26.0 58 0.0013 27.1 2.6 30 148-178 29-58 (230)
37 KOG2781 U3 small nucleolar rib 26.0 2.8E+02 0.0062 25.8 7.0 64 98-170 78-141 (290)
38 PRK14423 acylphosphatase; Prov 25.9 62 0.0014 24.9 2.5 20 249-268 30-49 (92)
39 PRK14445 acylphosphatase; Prov 25.6 66 0.0014 24.7 2.6 19 249-267 29-47 (91)
40 COG1116 TauB ABC-type nitrate/ 24.6 46 0.001 30.7 1.7 14 162-175 29-42 (248)
41 KOG0025 Zn2+-binding dehydroge 24.3 1.1E+02 0.0024 29.3 4.2 40 119-169 154-193 (354)
42 PF10500 SR-25: Nuclear RNA-sp 24.0 33 0.00072 31.1 0.7 45 230-275 149-194 (225)
43 cd01890 LepA LepA subfamily. 23.8 45 0.00097 27.3 1.4 12 163-174 1-12 (179)
44 TIGR02377 MocE_fam_FeS Rieske 23.7 32 0.0007 26.6 0.5 15 251-265 63-77 (101)
45 cd03548 Rieske_RO_Alpha_OMO_CA 23.3 44 0.00096 27.4 1.3 18 250-267 76-93 (136)
46 PRK14429 acylphosphatase; Prov 22.8 72 0.0016 24.4 2.3 18 250-267 28-45 (90)
47 TIGR02378 nirD_assim_sml nitri 22.7 32 0.0007 26.6 0.3 16 250-265 67-82 (105)
48 cd04160 Arfrp1 Arfrp1 subfamil 22.2 49 0.0011 26.7 1.4 12 164-175 1-12 (167)
49 PRK14451 acylphosphatase; Prov 22.2 67 0.0015 24.6 2.0 19 250-268 29-47 (89)
50 PRK14448 acylphosphatase; Prov 22.1 66 0.0014 24.7 2.0 18 250-267 28-45 (90)
51 cd03529 Rieske_NirD Assimilato 22.0 31 0.00068 26.6 0.1 15 251-265 67-81 (103)
52 PF01707 Peptidase_C9: Peptida 21.9 40 0.00087 30.0 0.8 35 233-273 138-173 (202)
53 COG2146 {NirD} Ferredoxin subu 21.6 37 0.0008 26.9 0.5 16 250-265 66-81 (106)
54 PRK14441 acylphosphatase; Prov 21.3 94 0.002 24.0 2.7 20 249-268 30-49 (93)
55 PF13580 SIS_2: SIS domain; PD 21.1 1.3E+02 0.0028 24.5 3.6 39 121-169 99-138 (138)
56 PF00857 Isochorismatase: Isoc 21.0 2E+02 0.0043 23.6 4.9 44 125-178 85-128 (174)
57 cd03473 Rieske_CMP_Neu5Ac_hydr 20.8 35 0.00077 27.4 0.2 16 250-265 70-85 (107)
58 PRK14425 acylphosphatase; Prov 20.8 83 0.0018 24.4 2.3 19 250-268 32-50 (94)
59 PRK14426 acylphosphatase; Prov 20.7 80 0.0017 24.3 2.2 18 250-267 30-47 (92)
60 PRK14068 exodeoxyribonuclease 20.7 1.6E+02 0.0035 22.1 3.7 23 26-48 5-29 (76)
61 cd01878 HflX HflX subfamily. 20.5 68 0.0015 27.2 1.9 16 160-175 39-54 (204)
62 cd03474 Rieske_T4moC Toluene-4 20.3 41 0.00089 26.0 0.5 15 250-264 61-75 (108)
63 PRK09511 nirD nitrite reductas 20.3 36 0.00079 26.9 0.2 16 250-265 70-85 (108)
64 PRK14436 acylphosphatase; Prov 20.2 88 0.0019 24.1 2.3 19 250-268 30-48 (91)
65 PF10516 SHNi-TPR: SHNi-TPR; 20.1 83 0.0018 20.4 1.8 18 24-41 12-29 (38)
66 KOG4387 Ornithine decarboxylas 20.1 98 0.0021 27.3 2.8 24 148-171 120-143 (191)
67 PRK14449 acylphosphatase; Prov 20.1 92 0.002 23.8 2.4 19 250-268 29-47 (90)
68 cd04167 Snu114p Snu114p subfam 20.0 60 0.0013 28.1 1.5 13 163-175 1-13 (213)
No 1
>PLN03019 carbonic anhydrase
Probab=100.00 E-value=1.1e-80 Score=577.46 Aligned_cols=277 Identities=65% Similarity=1.107 Sum_probs=253.7
Q ss_pred chhhhhhhhhhcccCCchhhhhhhhhhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhc---CCCChHHHHHHHHH
Q 023668 2 ATKFSKCMMLCCVRKSPVAREDMANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAA---GSRDIDPAERMKTG 78 (279)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~p~~~l~~Ll~g 78 (279)
.++|++|||+||++|++...++|+++|||+||++|+|||+||++|+.+|++||+++|+||++. +++|++++++|++|
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ale~Ll~G 130 (330)
T PLN03019 51 LSANGACFRCTCFSHFKLELRRMGNESYEDAIEALKKLLIEKDDLKDVAAAKVKKITAELQAASSSDSKSFDPVERIKEG 130 (330)
T ss_pred HhhccccceeeccccCchhhHHHhhhhHHHHHHHHHhhcccccccchHHHHHHHHhhHHhhhccCCCCchhHHHHHHHHH
Confidence 468999999999999998777899999999999999999999999999999999999999963 35689999999999
Q ss_pred HHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHH
Q 023668 79 FIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVL 158 (279)
Q Consensus 79 N~rF~~~~~~~~~~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~ 158 (279)
|++|+.+.+..+|++|++++.||+|+++||+||||||+|+.|||++|||+|||||+||+|+|+|.+.++++++||||||.
T Consensus 131 N~rF~~~~~~~~p~~~~~La~gQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~p~d~~~~~~v~aSIEYAV~ 210 (330)
T PLN03019 131 FVTFKKEKYETNPALYGELAKGQSPKYMVFACSDSRVCPSHVLDFHPGDAFVVRNIANMVPPFDKVKYAGVGAAIEYAVL 210 (330)
T ss_pred HHHHHhccccccHHHHHhhccCCCCCEEEEEecccCCCHHHHhCCCCCceEEEeccccccCCcccccccccchhHHHHHH
Confidence 99999999989999999999999999999999999999999999999999999999999999887666778899999999
Q ss_pred hcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhcC
Q 023668 159 HLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTY 238 (279)
Q Consensus 159 ~L~V~~IVV~GHs~CGai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~ 238 (279)
+|+|++|||||||+||||+|+++...++....++|++|+..+.|++..+....+...+.+++..+++ ||++|+++|++|
T Consensus 211 ~L~V~~IVV~GHs~CGaVkAal~~~~~g~~~~~~I~~wL~~i~pA~~~v~~~~~~~~~~d~~~~~E~-NV~~qv~nL~t~ 289 (330)
T PLN03019 211 HLKVENIVVIGHSACGGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVLAESESSAFEDQCGRCER-AVNVSLANLLTY 289 (330)
T ss_pred HhCCCEEEEecCCCchHHHHHHhccccCCccchHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHH-HHHHHHHHHHhC
Confidence 9999999999999999999998866555555689999999999998776554444556666655665 999999999999
Q ss_pred hhHHHhhhCCceeEEEEEEEccCCEEEEEeccCCCCCCCCC
Q 023668 239 PFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILPSVSV 279 (279)
Q Consensus 239 p~v~~~v~~g~l~I~G~vYDi~tG~v~~~~~~~~~~~~~~~ 279 (279)
|+|++++++|+|.||||+||+.||+|++|+.+++++|++|+
T Consensus 290 P~V~e~v~~G~L~I~G~~YDl~TG~V~~~~~~~~~~~~~~~ 330 (330)
T PLN03019 290 PFVREGVVKGTLALKGGYYDFVNGSFELWELQFGISPVHSI 330 (330)
T ss_pred HHHHHHHHcCCcEEEEEEEECCCceEEEEccccCcCCCCcC
Confidence 99999999999999999999999999999999999999986
No 2
>PLN03014 carbonic anhydrase
Probab=100.00 E-value=1.1e-75 Score=546.48 Aligned_cols=263 Identities=67% Similarity=1.128 Sum_probs=243.7
Q ss_pred CchhhhhhhhhhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHhhhccCChhh
Q 023668 17 SPVAREDMANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAA---GSRDIDPAERMKTGFIQFRTEKYEKNPDL 93 (279)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~p~~~l~~Ll~gN~rF~~~~~~~~~~~ 93 (279)
.|+|+|||+++|||+||++|+|||+||++|+.+|++||+++|++|++. ++.+++++++|++||++|+++.+..++++
T Consensus 71 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~lerL~~GN~rF~~~~~~~~~~~ 150 (347)
T PLN03014 71 APYWSEEMGTEAYDEAIEALKKLLIEKEELKTVAAAKVEQITAALQTGTSSDKKAFDPVETIKQGFIKFKKEKYETNPAL 150 (347)
T ss_pred CchhHhhhchhhHHHHHHHHHhhcccccccchHHHHhHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHhhccccCHHH
Confidence 478999999999999999999999999999999999999999999963 25689999999999999999999999999
Q ss_pred HhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEeccCCC
Q 023668 94 YGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCC 173 (279)
Q Consensus 94 ~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GHs~C 173 (279)
|+++++||+|+++||+||||||+|+.|||++|||+||+||+||+|+++|...+++++++|||||.+|+|++|||||||+|
T Consensus 151 ~~~La~GQ~P~alvI~CsDSRV~Pe~Ifd~~pGDlFVvRNaGNiV~~~d~~~~~~v~asLEYAV~~L~V~~IVV~GHs~C 230 (347)
T PLN03014 151 YGELAKGQSPKYMVFACSDSRVCPSHVLDFQPGDAFVVRNIANMVPPFDKVKYGGVGAAIEYAVLHLKVENIVVIGHSAC 230 (347)
T ss_pred HHhhccCCCCCEEEEEeccCCCCHHHHhCCCCCcEEEEeccccccCcccccccccchhHHHHHHHHhCCCEEEEeCCCCc
Confidence 99999999999999999999999999999999999999999999999886555678899999999999999999999999
Q ss_pred CccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhcChhHHHhhhCCceeEE
Q 023668 174 GGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALK 253 (279)
Q Consensus 174 Gai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~I~ 253 (279)
|||+|+++...++....++|++|+..+.|++..+..++....+.+++..++++||++||++|++||+|++++++|+|.||
T Consensus 231 GaV~Aa~~~~~~g~~~~~~I~~wl~~i~pA~~~v~~~~~~~~~~d~~~~~ekeNV~~qV~nL~t~P~V~eav~~G~L~I~ 310 (347)
T PLN03014 231 GGIKGLMSFPLDGNNSTDFIEDWVKICLPAKSKVISELGDSAFEDQCGRCEREAVNVSLANLLTYPFVREGLVKGTLALK 310 (347)
T ss_pred hHHHHHHhccccccccchhHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHcCCcEEE
Confidence 99999988665554556899999999999988776666666777777778899999999999999999999999999999
Q ss_pred EEEEEccCCEEEEEeccCCCCCCCCC
Q 023668 254 GAHYDFVNGKFELWDLDFNILPSVSV 279 (279)
Q Consensus 254 G~vYDi~tG~v~~~~~~~~~~~~~~~ 279 (279)
||+||+.||+|++|+.+++++|++++
T Consensus 311 G~~YDi~TG~V~~l~~~~~~~~~~~~ 336 (347)
T PLN03014 311 GGYYDFVKGAFELWGLEFGLSETSSV 336 (347)
T ss_pred EEEEECCCceEEEeccccccCCcccc
Confidence 99999999999999999999999875
No 3
>PLN00416 carbonate dehydratase
Probab=100.00 E-value=1.7e-67 Score=479.74 Aligned_cols=255 Identities=69% Similarity=1.150 Sum_probs=230.7
Q ss_pred hhhhhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHhhhccCChhhHhhhhcCCCC
Q 023668 24 MANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSP 103 (279)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~Ll~gN~rF~~~~~~~~~~~~~~la~gQ~P 103 (279)
|+.+||+++|.+|.+|||.++.+++++++++.-+++.|+....+|.+++++|++||+||+++++..++++|+.++.||+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~Ll~Gn~rF~~~~~~~~~~~~~~la~gQ~P 80 (258)
T PLN00416 1 MATESYEAAIKGLNDLLSTKADLGNVAAAKIKALTAELKELDSSNSDAIERIKTGFTQFKTEKYLKNSTLFNHLAKTQTP 80 (258)
T ss_pred CCcccHHHHHHHHHhhcccccccchHHHHhHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhcccccCHHHHHhhccCCCC
Confidence 88999999999999999999999999999999999999998888999999999999999999988889999999999999
Q ss_pred ceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEeccCCCCccccccCCC
Q 023668 104 KFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIP 183 (279)
Q Consensus 104 ~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~~~~ 183 (279)
+++|||||||||+|+.|||.+|||+|||||+||+|+++|...++++.+|||||+.+|+|++|||||||+||||+|+++..
T Consensus 81 ~alvI~CsDSRV~pe~If~~~pGDlFVvRNaGNiV~~~d~~~~~~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~~~ 160 (258)
T PLN00416 81 KFLVFACSDSRVCPSHILNFQPGEAFVVRNIANMVPPFDQKRHSGVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMSIE 160 (258)
T ss_pred CEEEEEecCCCCCHHHHcCCCCCCEEEEeccccccCCccccccccchhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcc
Confidence 99999999999999999999999999999999999998764445688999999999999999999999999999998643
Q ss_pred CCC-CCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhcChhHHHhhhCCceeEEEEEEEccCC
Q 023668 184 DNG-TTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNG 262 (279)
Q Consensus 184 ~~g-~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~I~G~vYDi~tG 262 (279)
+.. ....+++..|+....|++..........++.+.+..++++||++|+++|++||+|++++++|++.||||+||+.||
T Consensus 161 ~~~~~~~~~~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~~e~~nV~~qv~~L~~~P~V~~~v~~g~l~I~G~~Ydl~TG 240 (258)
T PLN00416 161 DDAAPTQSDFIENWVKIGASARNKIKEEHKDLSYDDQCNKCEKEAVNVSLGNLLSYPFVRAEVVKNTLAIRGGHYNFVKG 240 (258)
T ss_pred ccccccccchHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCc
Confidence 221 1224689999999888877665544455566666678889999999999999999999999999999999999999
Q ss_pred EEEEEeccCCCCCCCC
Q 023668 263 KFELWDLDFNILPSVS 278 (279)
Q Consensus 263 ~v~~~~~~~~~~~~~~ 278 (279)
+|++|+.+++.+|...
T Consensus 241 ~v~~~~~~~~~~p~~~ 256 (258)
T PLN00416 241 TFDLWELDFKTTPAFA 256 (258)
T ss_pred eEEEeccCcCCCCCcc
Confidence 9999999999998753
No 4
>PLN03006 carbonate dehydratase
Probab=100.00 E-value=1.7e-63 Score=459.04 Aligned_cols=242 Identities=42% Similarity=0.780 Sum_probs=213.7
Q ss_pred HHHHHHHhhc-ccCCchhhHHHhHHHHHHHHHhcC---CCChHHHHHHHHHHHHHHhhhccCChhhHhhhhcCCCCceEE
Q 023668 32 AIAGLTKLLS-EKSDLEGIAAAKIKQITADLEAAG---SRDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLV 107 (279)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~---~~p~~~l~~Ll~gN~rF~~~~~~~~~~~~~~la~gQ~P~~lv 107 (279)
+..+|..-++ +..+|+.+|++|+++||+||++.. ..|++++++|++||.+|+..++..+|++|++|+.||+|+++|
T Consensus 38 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~rf~~f~~~~~~~~~~~~~~La~GQ~P~~lv 117 (301)
T PLN03006 38 TQLRIPASFRRKATNLQVMASGKTPGLTQEANGVAIDRQNNTDVFDDMKQRFLAFKKLKYMDDFEHYKNLADAQAPKFLV 117 (301)
T ss_pred eEecccccccccccchhhhhhhchHHHHHHHhhccCCCCCcccHHHHHHHHHHhchhhccccCHHHHHHhccCCCCCEEE
Confidence 3345555444 556999999999999999999643 348999999999999999999999999999999999999999
Q ss_pred eeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCC
Q 023668 108 FACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGT 187 (279)
Q Consensus 108 itCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~~~~~~g~ 187 (279)
|+||||||+|+.|||++|||+|||||+||+|+|+|.+. .++.+||||||.+|+|++|||||||+||||+|+++..+.+.
T Consensus 118 I~CsDSRV~Pe~Ifd~~pGDlFVVRNaGNiVpp~d~~~-~~~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal~~~~~g~ 196 (301)
T PLN03006 118 IACADSRVCPSAVLGFQPGDAFTVRNIANLVPPYESGP-TETKAALEFSVNTLNVENILVIGHSRCGGIQALMKMEDEGD 196 (301)
T ss_pred EEeccCCCCHHHHhCCCCCCEEEEeccccccCCccccc-cchhhhHHHHHHHhCCCEEEEecCCCchHHHHHhhccccCC
Confidence 99999999999999999999999999999999987643 46889999999999999999999999999999998665543
Q ss_pred CCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhcChhHHHhhhCCceeEEEEEEEccCCEEEEE
Q 023668 188 TASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELW 267 (279)
Q Consensus 188 ~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~I~G~vYDi~tG~v~~~ 267 (279)
..++|+.|+..+.+++..+.....+..+.+++..++++||++|+++|++||+|++++++|+|.|||||||+.||+|+.|
T Consensus 197 -~~~~I~~wv~~~~~a~~~v~~~~~~~~~~~~~~~~ekeNV~~sv~nL~~~P~V~~~v~~G~L~IhG~~Ydi~tG~l~~~ 275 (301)
T PLN03006 197 -SRSFIHNWVVVGKKAKESTKAVASNLHFDHQCQHCEKASINHSLERLLGYPWIEEKVRQGSLSLHGGYYNFVDCTFEKW 275 (301)
T ss_pred -chhHHHHHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHCCCcEEEEEEEECCCceEEEe
Confidence 5679999999888887766543334456777788999999999999999999999999999999999999999999999
Q ss_pred eccCCCCC
Q 023668 268 DLDFNILP 275 (279)
Q Consensus 268 ~~~~~~~~ 275 (279)
+++++.+.
T Consensus 276 ~~~~~~~~ 283 (301)
T PLN03006 276 TVDYAASR 283 (301)
T ss_pred cccccccc
Confidence 99997764
No 5
>PLN02154 carbonic anhydrase
Probab=100.00 E-value=6.6e-54 Score=393.28 Aligned_cols=206 Identities=41% Similarity=0.761 Sum_probs=178.3
Q ss_pred CChHHHHHHHHHHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccc
Q 023668 67 RDIDPAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKY 146 (279)
Q Consensus 67 ~p~~~l~~Ll~gN~rF~~~~~~~~~~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~ 146 (279)
+..+.+++|++||++|+.+++..++++|+.|+.||+|+++||+||||||+|+.|||++|||+||+||+||+|++++.. .
T Consensus 71 ~~~~~l~~Ll~gf~~f~~~~~~~~~e~f~~La~GQ~P~~lvi~C~DSRV~pe~if~~~pGdlFvvRN~GNiv~~~~~g-~ 149 (290)
T PLN02154 71 TSYDFLDEMRHRFLKFKRQKYLPEIEKFKALAIAQSPKVMVIGCADSRVCPSYVLGFQPGEAFTIRNVANLVTPVQNG-P 149 (290)
T ss_pred hhHHHHHHHHHHHHHHhhccccccHHHHHHhccCCCCCEEEEEecCCCCCHHHHcCCCCCCEEEEeccCCccCCccCC-c
Confidence 345778999999999999999999999999999999999999999999999999999999999999999999987643 2
Q ss_pred cchHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHH
Q 023668 147 SGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKE 226 (279)
Q Consensus 147 s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~ 226 (279)
.++.+||||||.+|+|++|||||||+||||+|+++.........+++++|+..+.+++.......+...+.+.+..++++
T Consensus 150 ~~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~~~~~~~~~~~~v~~Wl~~~~~a~~~~~~~~~~~~~~~~~~~~e~~ 229 (290)
T PLN02154 150 TETNSALEFAVTTLQVENIIVMGHSNCGGIAALMSHQNHQGQHSSLVERWVMNGKAAKLRTQLASSHLSFDEQCRNCEKE 229 (290)
T ss_pred cchhhHHHHHHHHhCCCEEEEecCCCchHHHHHHhcCccccccchHHHHHHHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Confidence 35889999999999999999999999999999987532222345799999987776654433222334556666778889
Q ss_pred HHHHHHHHHhcChhHHHhhhCCceeEEEEEEEccCCEEEEEeccCCC
Q 023668 227 AVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNI 273 (279)
Q Consensus 227 nV~~~v~~L~~~p~v~~~v~~g~l~I~G~vYDi~tG~v~~~~~~~~~ 273 (279)
||++|+++|++||+|++++++|+|+||||+||+.||+|+.|+.+.+.
T Consensus 230 NV~~qv~nL~t~P~I~e~v~~G~L~IhG~~Ydl~tG~l~~~~~~~~~ 276 (290)
T PLN02154 230 SIKDSVMNLITYSWIRDRVKRGEVKIHGCYYNLSDCSLEKWRLSSDK 276 (290)
T ss_pred HHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCceEEEeccccCc
Confidence 99999999999999999999999999999999999999999988753
No 6
>PRK10437 carbonic anhydrase; Provisional
Probab=100.00 E-value=6.7e-54 Score=382.44 Aligned_cols=196 Identities=24% Similarity=0.401 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchH
Q 023668 71 PAERMKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAG 150 (279)
Q Consensus 71 ~l~~Ll~gN~rF~~~~~~~~~~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~ 150 (279)
.+++|++||++|++..+..+|++|+.++.+|+|+++|||||||||+|+.+||.+|||+||+||+||+|++.|. ++.
T Consensus 3 ~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~~q~p~~~~i~C~DSRv~p~~i~~~~~Gd~fv~Rn~gn~v~~~~~----~~~ 78 (220)
T PRK10437 3 DIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSDSRVPAERLTGLEPGELFVHRNVANLVIHTDL----NCL 78 (220)
T ss_pred hHHHHHHHHHHHHHhhhccChHHHHhcccCCCCCEEEEEecccCCCHHHhcCCCCCcEEEEeecccccCCCCc----chH
Confidence 5889999999999998888999999999999999999999999999999999999999999999999998764 378
Q ss_pred HHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHHHHHH
Q 023668 151 AAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNV 230 (279)
Q Consensus 151 asLEyAv~~L~V~~IVV~GHs~CGai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~ 230 (279)
++|||||.+|+|++|||||||+||||+|+++... .++++.|+....|+...........+..+....++++||+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~~~~-----~~~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~l~e~NV~~ 153 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVENPE-----LGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVME 153 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHcCCC-----cccHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999986432 36899999998888765444444444555667788999999
Q ss_pred HHHHHhcChhHHHhhhCC-ceeEEEEEEEccCCEEEEEeccCCCCC
Q 023668 231 SLGNLLTYPFVRESVVKN-TLALKGAHYDFVNGKFELWDLDFNILP 275 (279)
Q Consensus 231 ~v~~L~~~p~v~~~v~~g-~l~I~G~vYDi~tG~v~~~~~~~~~~~ 275 (279)
|+++|+++|+|++++++| +|.||||+||+.||+|+.++.+....+
T Consensus 154 qv~~L~~~p~v~~~~~~g~~l~IhG~~Ydl~tG~v~~l~~~~~~~~ 199 (220)
T PRK10437 154 QVYNLGHSTIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRE 199 (220)
T ss_pred HHHHHhhCHHHHHHHHCCCceEEEEEEEECCCcEEEEecCCCCchh
Confidence 999999999999999999 699999999999999999987765443
No 7
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3.8e-54 Score=377.15 Aligned_cols=189 Identities=50% Similarity=0.808 Sum_probs=166.0
Q ss_pred HHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCc-cccchHHHHHHH
Q 023668 78 GFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK-KYSGAGAAIEYA 156 (279)
Q Consensus 78 gN~rF~~~~~~~~~~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~-~~s~~~asLEyA 156 (279)
||++|++..+..++++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|++++.+ .++++.+|||||
T Consensus 1 G~~~f~~~~~~~~~~~~~~l~~gQ~P~~~~i~C~DsRv~~~~i~~~~~Gd~fv~Rn~gn~v~~~~~~~~~~~~~asleya 80 (190)
T cd00884 1 GFRRFRKEYFPEERELFEKLAKGQSPKALFIACSDSRVVPALITQTQPGELFVVRNVGNLVPPYEPDGGFHGTSAAIEYA 80 (190)
T ss_pred ChHHHHhhhhhhhHHHHHHhccCCCCCeEEEeeeCCCCCHHHHcCCCCCCEEEEeccCCcCCcccccccccchhhhHHHH
Confidence 7999999988889999999999999999999999999999999999999999999999999987542 234688999999
Q ss_pred HHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHh
Q 023668 157 VLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLL 236 (279)
Q Consensus 157 v~~L~V~~IVV~GHs~CGai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~ 236 (279)
|.+|+|++|||||||+||||+|+++... +....+++..|+....|+...........+..+....+++.||.+|+++|+
T Consensus 81 v~~l~v~~ivV~GH~~Cgav~Aa~~~~~-~~~~~~~l~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~NV~~qv~~L~ 159 (190)
T cd00884 81 VAVLKVEHIVVCGHSDCGGIRALLSPED-LLDKLPFIGKWLRIAEPAKEVVLAELSHADFDDQLRALEKENVLLSLENLL 159 (190)
T ss_pred HHHhCCCEEEEeCCCcchHHHHHhcccc-ccCCcchHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987543 123356899999998888876655443344455566788999999999999
Q ss_pred cChhHHHhhhCCceeEEEEEEEccCCEEEEE
Q 023668 237 TYPFVRESVVKNTLALKGAHYDFVNGKFELW 267 (279)
Q Consensus 237 ~~p~v~~~v~~g~l~I~G~vYDi~tG~v~~~ 267 (279)
++|+|++++++|+|.|||||||+.||+|+.|
T Consensus 160 ~~p~v~~~v~~g~l~i~G~~Ydi~tG~v~~~ 190 (190)
T cd00884 160 TYPFVRERLEAGTLSLHGWYYDIETGELYAY 190 (190)
T ss_pred hCHHHHHHHHCCCcEEEEEEEECCceEEEeC
Confidence 9999999999999999999999999999864
No 8
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-54 Score=386.55 Aligned_cols=256 Identities=47% Similarity=0.734 Sum_probs=238.2
Q ss_pred hhhhhhhhhcccCCchhhhhhhhhhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 023668 4 KFSKCMMLCCVRKSPVAREDMANDAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQFR 83 (279)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~Ll~gN~rF~ 83 (279)
.+..|.+ .|....+.+..+|..++|+.+++.+.++|..+.++ +++++++++|++ ++++++|+++|..|.
T Consensus 6 ~~~~~~~-t~~~~~~~~~~~mp~~~~~~~~~~dsrml~~r~~~--~~~~~~~~~~~~--------~~~~~~i~~~Fv~~~ 74 (276)
T KOG1578|consen 6 GVIRFRN-TTRKDLVEEIRDMPSPTAVMFTCMDSRMLPTRYNL--VAAAKIKKLTAE--------FDTLEDIGDMFVVRN 74 (276)
T ss_pred ccchhhh-hhHHHhHHHHHhCCCHHHHHHHHHHhhccchhhhh--hhhhhhhhhhhc--------cchHHHHHhhHhhhc
Confidence 3444444 44555567789999999999999999999999999 999999999993 678999999999999
Q ss_pred hhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcc
Q 023668 84 TEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVE 163 (279)
Q Consensus 84 ~~~~~~~~~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~ 163 (279)
++++.++|.+|..++++|+|+.+||+|+||||+|++|++++|||.|+|||++|+|+|.|...+..++|+|||+|.+|+|+
T Consensus 75 ~~~~~~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkve 154 (276)
T KOG1578|consen 75 SGNYIPNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVE 154 (276)
T ss_pred cccCCCChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999998888888999999999999999
Q ss_pred eEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhcChhHHH
Q 023668 164 NIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRE 243 (279)
Q Consensus 164 ~IVV~GHs~CGai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~ 243 (279)
+|+||||++||||+++|....++. ..+|+.+|+....+++..++..+..+.+.+|+..++.++++.++.+|.+||++++
T Consensus 155 nIiv~ghs~cgGik~~m~~~~~~~-~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~ 233 (276)
T KOG1578|consen 155 NIIVIGHSLCGGIKGLMSFSLEAP-SRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVRE 233 (276)
T ss_pred eEEEeccccCCchhhcccccccCc-chhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 999999999999999999887766 6789999999999999988888889999999999999999999999999999999
Q ss_pred hhhCCceeEEEEEEEccCCEEEEEeccC
Q 023668 244 SVVKNTLALKGAHYDFVNGKFELWDLDF 271 (279)
Q Consensus 244 ~v~~g~l~I~G~vYDi~tG~v~~~~~~~ 271 (279)
++.+|.+++||++||+..|.+++|.+|.
T Consensus 234 ~v~k~~l~~~G~~Y~fskg~~~~~~lde 261 (276)
T KOG1578|consen 234 AVVKGFLQVHGGYYNFSKGTKEFWELDE 261 (276)
T ss_pred HHhhcceeeeeeeEEeccCceeEEEecc
Confidence 9999999999999999999999999993
No 9
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=4e-53 Score=368.52 Aligned_cols=180 Identities=34% Similarity=0.541 Sum_probs=158.0
Q ss_pred HHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHH
Q 023668 79 FIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVL 158 (279)
Q Consensus 79 N~rF~~~~~~~~~~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~ 158 (279)
|++|++.++.++|++|++++.||+|+++|||||||||+|+.+||.+|||+||+||+||+|+++|. ++.+||||||.
T Consensus 1 n~~f~~~~~~~~~~~~~~l~~gQ~P~~~vi~CsDSRv~pe~if~~~~GdlFViRnaGN~v~~~~~----~~~asleyAv~ 76 (182)
T cd00883 1 NRAWAEEKKAKDPDFFPRLAKGQTPEYLWIGCSDSRVPENTILGLLPGEVFVHRNIANLVSPTDL----NCLSVLQYAVD 76 (182)
T ss_pred ChhhhhhccccCHHHHHHhhcCCCCCEEEEEecCCCCCHHHhcCCCCCCEEEEEeeccccCCCCc----chhhhHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999998764 47899999999
Q ss_pred hcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCC-ChHHHhhHHHHHHHHHHHHHHhc
Q 023668 159 HLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDL-SFEEQCKNCEKEAVNVSLGNLLT 237 (279)
Q Consensus 159 ~L~V~~IVV~GHs~CGai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~-~~~~~~~~~~~~nV~~~v~~L~~ 237 (279)
+|||++|||||||+||||+|+++.. ..+++..|+....++.......+... +..+....++++||++|+++|++
T Consensus 77 ~L~v~~IvV~GHs~CGav~a~~~~~-----~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~ 151 (182)
T cd00883 77 VLKVKHIIVCGHYGCGGVKAALTGK-----RLGLLDNWLRPIRDVYRLHAAELDALEDEEERVDRLVELNVVEQVKNLCK 151 (182)
T ss_pred hcCCCEEEEecCCCchHHHHHHcCC-----CCccHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999998643 23689999988877665433222222 33445567889999999999999
Q ss_pred ChhHHHhhhC-CceeEEEEEEEccCCEEEEE
Q 023668 238 YPFVRESVVK-NTLALKGAHYDFVNGKFELW 267 (279)
Q Consensus 238 ~p~v~~~v~~-g~l~I~G~vYDi~tG~v~~~ 267 (279)
+|+|++++++ |+|.||||+||+.||+|+.+
T Consensus 152 ~p~i~~~~~~~~~l~I~G~~ydi~tG~v~~~ 182 (182)
T cd00883 152 TPIVQDAWKRGQELEVHGWVYDLGDGLLRDL 182 (182)
T ss_pred CHHHHHHHHcCCCeEEEEEEEEcCccEEEeC
Confidence 9999999999 89999999999999999853
No 10
>PRK15219 carbonic anhydrase; Provisional
Probab=100.00 E-value=3.7e-52 Score=376.77 Aligned_cols=189 Identities=22% Similarity=0.347 Sum_probs=161.7
Q ss_pred CCChHHHHHHHHHHHHHHhhhccCChhhH---hhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCC
Q 023668 66 SRDIDPAERMKTGFIQFRTEKYEKNPDLY---GALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYD 142 (279)
Q Consensus 66 ~~p~~~l~~Ll~gN~rF~~~~~~~~~~~~---~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d 142 (279)
.+|.+++++|++||+||+++.+. +++++ .++++||+|+++||||||||||||.+||.+|||+||+||+||+|++
T Consensus 51 ~~p~~al~~L~~GN~rF~~~~~~-~~~~~~~~~~la~gQ~P~a~vi~CsDSRV~pe~ifd~~~GdlFvvRnaGN~v~~-- 127 (245)
T PRK15219 51 MTPDQIIESLKQGNKRFRSGKPA-QHDYLAQKRASAAGQYPAAVILSCIDSRAPAEIILDTGIGETFNSRVAGNISND-- 127 (245)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcC-CchhhHHhhhhccCCCCeEEEEecccCCCCHHHHhCCCCCcEEEEeccccccCc--
Confidence 57899999999999999998865 44433 3467899999999999999999999999999999999999999974
Q ss_pred CccccchHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhc-CCCChHHHhh
Q 023668 143 QKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKEC-NDLSFEEQCK 221 (279)
Q Consensus 143 ~~~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~-~~~~~~~~~~ 221 (279)
.+.+||||||.+|+|++|||||||+||||+|+++... .+++..|+..+.|+........ ......+...
T Consensus 128 -----~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~~~~-----~g~l~~wl~~i~pa~~~~~~~~~~~~~~~~~~~ 197 (245)
T PRK15219 128 -----DLLGSMEFACAVAGAKVVLVMGHTACGAVKGAIDNVE-----LGNLTGLLDRIKPAIEVTEFDGERSSKNYKFVD 197 (245)
T ss_pred -----chhhHHHHHHHHcCCCEEEEecCCcchHHHHHHhcCC-----cchHHHHHHHHHHHHHHHhhcccccCCHHHHHH
Confidence 2678999999999999999999999999999987532 3589999999988876543211 1112334556
Q ss_pred HHHHHHHHHHHHHHhc-ChhHHHhhhCCceeEEEEEEEccCCEEEEE
Q 023668 222 NCEKEAVNVSLGNLLT-YPFVRESVVKNTLALKGAHYDFVNGKFELW 267 (279)
Q Consensus 222 ~~~~~nV~~~v~~L~~-~p~v~~~v~~g~l~I~G~vYDi~tG~v~~~ 267 (279)
.++++||+.|+++|++ +|++++.+++|+|+||||+||+.||+|+++
T Consensus 198 ~~~~~NV~~qv~~L~~~~pv~~~~v~~g~l~I~G~~Ydl~tG~V~~l 244 (245)
T PRK15219 198 AVARKNVELTIENIRKNSPILRKLEQEGKIKIVGSMYNLNGGKVEFF 244 (245)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHCCCcEEEEEEEECCCeEEEee
Confidence 7889999999999986 799999999999999999999999999987
No 11
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-52 Score=368.93 Aligned_cols=199 Identities=31% Similarity=0.493 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHHHhhhccCChhhHhhhh-cCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccc
Q 023668 70 DPAERMKTGFIQFRTEKYEKNPDLYGALA-KGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSG 148 (279)
Q Consensus 70 ~~l~~Ll~gN~rF~~~~~~~~~~~~~~la-~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~ 148 (279)
..++.|++||++|.++++..++.+|+.++ .+|+|+++|||||||||+||.+||++|||+||+||+||+|++++. +
T Consensus 2 ~~~~~ll~gn~~f~~~~~~~~~~~~~~l~~~~Q~P~~lii~C~DSRv~~e~i~~~~pGdlfV~RNaGniV~~~~~----~ 77 (207)
T COG0288 2 SALKDLLAGNQRFAEGKFPEQSALFRKLADKGQSPKALIITCSDSRVPPELITGLGPGDLFVIRNAGNIVTHPDG----S 77 (207)
T ss_pred cHHHHHHHHHHHHHhcccccchHHHHHHhccCCCCcEEEEEEccCCCCHHHHhCCCCccEEEEeecccccCCCcc----c
Confidence 46899999999999999888899999876 569999999999999999999999999999999999999998753 5
Q ss_pred hHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChH-HHhhHHHHHH
Q 023668 149 AGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFE-EQCKNCEKEA 227 (279)
Q Consensus 149 ~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~-~~~~~~~~~n 227 (279)
+++|||||+.+|||++|||||||+|||++|+++....+.. .+..|+....+............... +.....++.|
T Consensus 78 ~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~~~~~~---~i~~wl~~i~~~~~~~~~~~~~~~~~~~~~~~~~e~n 154 (207)
T COG0288 78 VLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQLEGLK---PIPGWLLHIEDLAYAVSNLLGELPGEEDRSDELVEDN 154 (207)
T ss_pred hhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccccccccc---ccchhhhHHHHHHHHhhcchhhccchhhhhhhHHHHH
Confidence 8899999999999999999999999999999887665432 58999977766654443332222222 4455667899
Q ss_pred HHHHHHHHhcChhHHHhhhCCc-eeEEEEEEEccCCEEEEEeccCCCCC
Q 023668 228 VNVSLGNLLTYPFVRESVVKNT-LALKGAHYDFVNGKFELWDLDFNILP 275 (279)
Q Consensus 228 V~~~v~~L~~~p~v~~~v~~g~-l~I~G~vYDi~tG~v~~~~~~~~~~~ 275 (279)
|++|+.+|+++|.|+.++..++ |.||||+||+.||+++.++......+
T Consensus 155 V~~qv~~L~~~p~v~~~~~~~~~l~vhG~~y~i~~G~l~~~~~~~~~~~ 203 (207)
T COG0288 155 VREQVANLRTHPIVQSALVRGQKVAVHGWVYDIETGRLYVVDVATIDFE 203 (207)
T ss_pred HHHHHHHHhcCCchhhhhhcCceEEEEEEEEecCCceEEEEeccccccc
Confidence 9999999999999999988877 99999999999999998888765443
No 12
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=9e-48 Score=326.33 Aligned_cols=150 Identities=33% Similarity=0.481 Sum_probs=136.6
Q ss_pred ChHHHHHHHHHHHHHHhhhccC---ChhhHhhhhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCc
Q 023668 68 DIDPAERMKTGFIQFRTEKYEK---NPDLYGALAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQK 144 (279)
Q Consensus 68 p~~~l~~Ll~gN~rF~~~~~~~---~~~~~~~la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~ 144 (279)
|.+++++|++||++|.+++... +++.|..++++|+|+++||||||||++|+.+||++|||+||+||+||+|++
T Consensus 1 p~~~~~~Ll~gN~~f~~~~~~~~~~~~~~~~~l~~~q~P~~~vitC~DsRv~~~~i~~~~~Gd~fviRn~gn~v~~---- 76 (154)
T cd03378 1 PDEALERLKEGNKRFVSGKPLHPDQDLARRRELAKGQKPFAVILSCSDSRVPPEIIFDQGLGDLFVVRVAGNIVDD---- 76 (154)
T ss_pred ChHHHHHHHHHHHHHHhcCccCccccHHHHHHhccCCCCcEEEEEcCCCCCCHHHHcCCCCCCEEEEeccccccCh----
Confidence 6789999999999999876431 256788999999999999999999999999999999999999999999986
Q ss_pred cccchHHHHHHHHHhcCcceEEEeccCCCCccccccCCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHH
Q 023668 145 KYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCE 224 (279)
Q Consensus 145 ~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~ 224 (279)
++.+|||||+.+|+|++|||||||+||+++++ +.
T Consensus 77 ---~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a~-------------------------------------------~~ 110 (154)
T cd03378 77 ---DVLGSLEYAVEVLGVPLVVVLGHESCGAVAAA-------------------------------------------AV 110 (154)
T ss_pred ---hHHHHHHHHHHHhCCCEEEEEcCCCccHHHHH-------------------------------------------HH
Confidence 36789999999999999999999999998754 24
Q ss_pred HHHHHHHHHHHhcChhHHH-hhhCCceeEEEEEEEccCCEEEEE
Q 023668 225 KEAVNVSLGNLLTYPFVRE-SVVKNTLALKGAHYDFVNGKFELW 267 (279)
Q Consensus 225 ~~nV~~~v~~L~~~p~v~~-~v~~g~l~I~G~vYDi~tG~v~~~ 267 (279)
++||+.|+++|+++|+|++ ++++|++.||||+||+.||+++++
T Consensus 111 ~~nV~~~v~~L~~~p~i~~~~~~~g~l~v~G~vyd~~tG~v~~~ 154 (154)
T cd03378 111 RANVKATVAKLRSRSPIIAELVAAGKLKIVGAYYDLDTGKVEFL 154 (154)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHcCCcEEEEEEEECCCcEEEeC
Confidence 6899999999999999988 999999999999999999999874
No 13
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=100.00 E-value=9.5e-44 Score=299.86 Aligned_cols=152 Identities=36% Similarity=0.613 Sum_probs=121.8
Q ss_pred eEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEeccCCCCccccccCCCC
Q 023668 105 FLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD 184 (279)
Q Consensus 105 ~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~~~~~ 184 (279)
++||||||||++|+.+||.+|||+||+||+||+|++.+. ++.+|||||+.+|++++|||||||+|||+++++...+
T Consensus 1 a~vi~C~DsR~~~~~~~~~~~Gd~fviRnaGn~v~~~~~----~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~~~~ 76 (153)
T PF00484_consen 1 ALVITCSDSRVPPEEIFGLKPGDLFVIRNAGNRVPPPDD----SALASLEYAVYHLGVKEIIVCGHTDCGAIKAALDSEE 76 (153)
T ss_dssp EEEEEETTTTSTHHHHHTS-TTSEEEEEETTG---TT-H----HHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHHHSH
T ss_pred CEEEEEcCCCCCHHHHhCCCCcceeeeeEEeeecCcccc----chhhheeeeeecCCCCEEEEEcCCCchHHHHHHhhcc
Confidence 589999999999999999999999999999999987643 5889999999999999999999999999998765221
Q ss_pred CCCCCchhHHHHHHhhhhhHHH-HHhhcCCCChHHHhhHHHHHHHHHHHHHHhcChhHHHhhhCCceeEEEEEEEccCCE
Q 023668 185 NGTTASDFIEEWVKICSSAKSK-VKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFVNGK 263 (279)
Q Consensus 185 ~g~~~~~~i~~wl~~~~pa~~~-~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~I~G~vYDi~tG~ 263 (279)
..+.+++|++...|+... .................+++||++|+++|+++|+|++++++|++.||||+||++||+
T Consensus 77 ----~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~~~~~~~l~v~G~~ydi~tG~ 152 (153)
T PF00484_consen 77 ----EDGFLRDWLQKIRPALEECVDELLPSSWDFEDLDDLVEENVRQQVENLRSHPLIPDAVAKGKLKVHGFVYDIKTGK 152 (153)
T ss_dssp ----TCSHHHHHHHHHHHHHHHTHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSEEEEEEEETTTTE
T ss_pred ----ccchHHHHHHhhhhhHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHCCCCEEEEEEEECCCcc
Confidence 246899999988887765 322222222222233447899999999999999999999999999999999999998
Q ss_pred E
Q 023668 264 F 264 (279)
Q Consensus 264 v 264 (279)
|
T Consensus 153 v 153 (153)
T PF00484_consen 153 V 153 (153)
T ss_dssp E
T ss_pred C
Confidence 6
No 14
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=3e-42 Score=281.15 Aligned_cols=119 Identities=44% Similarity=0.746 Sum_probs=111.4
Q ss_pred CCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 023668 101 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 180 (279)
Q Consensus 101 Q~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~ 180 (279)
|+|+++||||||||++|+.+||++|||+||+||+||+|++.+. ++++|||||+.+||+++|+|||||+||++++
T Consensus 1 q~p~~~vltC~DsRv~~~~~~~~~~Gd~fv~Rn~Gn~v~~~~~----~~~~sl~~av~~l~v~~ivV~gHt~CG~v~a-- 74 (119)
T cd00382 1 QKPKALIIGCSDSRVPPELIFGLGPGDLFVVRNAGNLVPPYDL----DVLASLEYAVEVLGVKHIIVCGHTDCGAVKA-- 74 (119)
T ss_pred CCCeEEEEEeeCCCCCHHHHhCCCCCCEEEEeccCCcCCCCcc----cHHHHHHHHHHhhCCCEEEEEccCCCcHHHH--
Confidence 7999999999999999999999999999999999999987643 5889999999999999999999999999774
Q ss_pred CCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhcChhHHHhhhCCceeEEEEEEEcc
Q 023668 181 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 260 (279)
Q Consensus 181 ~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~I~G~vYDi~ 260 (279)
..++||++|+++|+++|+++++++.+++.|||++||++
T Consensus 75 ------------------------------------------~~~~nV~~~v~~L~~~p~i~~a~~~~~l~V~G~~ydi~ 112 (119)
T cd00382 75 ------------------------------------------LVEENVREQVENLRSHPLIQEAVAPGELKVHGWVYDIE 112 (119)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHhCHHHHHHHHCCCCEEEEEEEECC
Confidence 24679999999999999999999999999999999999
Q ss_pred CCEEEEE
Q 023668 261 NGKFELW 267 (279)
Q Consensus 261 tG~v~~~ 267 (279)
||+++++
T Consensus 113 tG~v~~~ 119 (119)
T cd00382 113 TGKLEVL 119 (119)
T ss_pred CCEEEeC
Confidence 9999874
No 15
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=100.00 E-value=2.8e-39 Score=271.06 Aligned_cols=142 Identities=23% Similarity=0.298 Sum_probs=113.8
Q ss_pred CCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEeccCCCCcccccc
Q 023668 101 QSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLM 180 (279)
Q Consensus 101 Q~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~ 180 (279)
+.++++||||||||++|+.+||.+|||+||+||+||+|++ ++++||+||+.+||+++|+|||||+|||++++.
T Consensus 1 ~~~~~~vitC~DsRv~~e~i~~~~~GdlfviRnaGn~V~~-------~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a~~ 73 (142)
T cd03379 1 PARKLAIVTCMDARLDPEKALGLKLGDAKVIRNAGGRVTD-------DAIRSLVVSVYLLGTREIIVIHHTDCGMLTFTD 73 (142)
T ss_pred CCceEEEEEEeCCCCCHHHHcCCCCCcEEEEeccCCccCH-------hHHHHHHHHHHHhCCCEEEEEeecCCcceEecH
Confidence 3679999999999999999999999999999999999986 367899999999999999999999999999864
Q ss_pred CCCCCCCCCchhHHHHHHhhhhhHHHHHhhcCCCChHHHhhHHHHHHHHHHHHHHhcChhHHHhhhCCceeEEEEEEEcc
Q 023668 181 SIPDNGTTASDFIEEWVKICSSAKSKVKKECNDLSFEEQCKNCEKEAVNVSLGNLLTYPFVRESVVKNTLALKGAHYDFV 260 (279)
Q Consensus 181 ~~~~~g~~~~~~i~~wl~~~~pa~~~~~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p~v~~~v~~g~l~I~G~vYDi~ 260 (279)
+ .+..|+........... .....+.......++||++|+++|+++|++++ +++||||+||+.
T Consensus 74 ~----------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~nV~~~v~~L~~~p~i~~-----~i~V~G~~ydi~ 135 (142)
T cd03379 74 E----------ELKEKMKERGIAEAYGG---IDKEFWFLGFDDLEESVREDVERIRNHPLIPD-----DVPVHGYVYDVK 135 (142)
T ss_pred H----------HHHHHHHHhcCcchhcc---cCcchhhcccccHHHHHHHHHHHHHhCcCccC-----CCEEEEEEEECC
Confidence 3 34566653211110000 11122223334678999999999999999997 589999999999
Q ss_pred CCEEEEE
Q 023668 261 NGKFELW 267 (279)
Q Consensus 261 tG~v~~~ 267 (279)
||+++.+
T Consensus 136 tG~v~~v 142 (142)
T cd03379 136 TGKLTEV 142 (142)
T ss_pred CCEEEeC
Confidence 9999853
No 16
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=98.22 E-value=3e-08 Score=90.62 Aligned_cols=193 Identities=20% Similarity=0.265 Sum_probs=124.2
Q ss_pred HHHHHHHHHhhhccCChhhHhhhhcCCCCceEEeeccCCCCChhhh----------------cCCCCCcEEEEeccCCcC
Q 023668 75 MKTGFIQFRTEKYEKNPDLYGALAKGQSPKFLVFACSDSRVCPSHI----------------LNFQPGEAFMVRNIANMV 138 (279)
Q Consensus 75 Ll~gN~rF~~~~~~~~~~~~~~la~gQ~P~~lvitCsDSRV~pe~i----------------l~~~pGe~FVvRNaGN~V 138 (279)
|+.|..||+..-... +..++..-++|.+..++|+|||+-|... +..+.||.|++||.||..
T Consensus 3 i~~~~~~~~~t~~~~---~~~~~~~mp~~~~~~~~~~dsrml~~r~~~~~~~~~~~~~~~~~~~~~i~~~Fv~~~~~~~~ 79 (276)
T KOG1578|consen 3 ILRGVIRFRNTTRKD---LVEEIRDMPSPTAVMFTCMDSRMLPTRYNLVAAAKIKKLTAEFDTLEDIGDMFVVRNSGNYI 79 (276)
T ss_pred cccccchhhhhhHHH---hHHHHHhCCCHHHHHHHHHHhhccchhhhhhhhhhhhhhhhccchHHHHHhhHhhhccccCC
Confidence 677888888765432 2256777889999999999999999866 667899999999999999
Q ss_pred CCCCC----cc-ccchHHHHHHHHHhcCcceEEEeccCCCCccccccCCCC--CCC---CCchhHHHHHHhhhhh-----
Q 023668 139 PPYDQ----KK-YSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPD--NGT---TASDFIEEWVKICSSA----- 203 (279)
Q Consensus 139 ~~~d~----~~-~s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a~~~~~~--~g~---~~~~~i~~wl~~~~pa----- 203 (279)
+.... .. .+--.++|+-|+......||++|||++|-+++...+... +.. ...+.++.|+....-.
T Consensus 80 ~~p~~f~~~~~~qsp~~l~i~csdsRv~~shIL~~~pge~f~irniaNlv~p~~~~~~~~~~AalE~aV~~lkvenIiv~ 159 (276)
T KOG1578|consen 80 PNPTLFGALAKSQSPEPLALECSDSRVCISHILVCGPGECFAIRNIANLVPPPDKSKPTNVGAALEYAVTTLKVENIIVI 159 (276)
T ss_pred CChhhhHHHhccCCCcceEEEeccccCCCceEEEecCchHhHHHHHHhccCcccccCcccccchHHHHHHHhccceEEEe
Confidence 85321 00 111224677788888889999999999999997655433 111 1235788898532110
Q ss_pred ----------HHHHHhhcCCCChHHH------------hhHHHHHHHHHHHHHHhcChhHH--HhhhCCceeEEE--EEE
Q 023668 204 ----------KSKVKKECNDLSFEEQ------------CKNCEKEAVNVSLGNLLTYPFVR--ESVVKNTLALKG--AHY 257 (279)
Q Consensus 204 ----------~~~~~~~~~~~~~~~~------------~~~~~~~nV~~~v~~L~~~p~v~--~~v~~g~l~I~G--~vY 257 (279)
......+-+..+|.+. -..+...|..+|.+|..++.+.. ..+......+++ .+.
T Consensus 160 ghs~cgGik~~m~~~~~~~~~~f~~~wv~id~~~kl~~e~~~s~i~~~~Q~~n~~~~a~~~s~~~l~sy~~vr~~v~k~~ 239 (276)
T KOG1578|consen 160 GHSLCGGIKGLMSFSLEAPSRSFIENWVYIDPEAKLAVEDKLSQINFLQQCENCESEAFLVSLARLLSYPFVREAVVKGF 239 (276)
T ss_pred ccccCCchhhcccccccCcchhhhhhheeeChHHHHHHHhHHhhchHHHHHHHHHHHHHHHHHHHHhcChHHHHHHhhcc
Confidence 0000000011112110 01233456778999998887766 555566666666 667
Q ss_pred EccCCEEEEEecc
Q 023668 258 DFVNGKFELWDLD 270 (279)
Q Consensus 258 Di~tG~v~~~~~~ 270 (279)
+...|..+.++..
T Consensus 240 l~~~G~~Y~fskg 252 (276)
T KOG1578|consen 240 LQVHGGYYNFSKG 252 (276)
T ss_pred eeeeeeeEEeccC
Confidence 7777777665543
No 17
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=62.04 E-value=20 Score=38.27 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=27.6
Q ss_pred HhcChhHHHhhhCCce------eEEEEEEEccCCEEEEEeccC
Q 023668 235 LLTYPFVRESVVKNTL------ALKGAHYDFVNGKFELWDLDF 271 (279)
Q Consensus 235 L~~~p~v~~~v~~g~l------~I~G~vYDi~tG~v~~~~~~~ 271 (279)
|...|-||+.+++..| .-.|+..|..|-+|++++.+.
T Consensus 541 llNdp~VR~~L~~rGI~IP~dT~Fvaa~H~TttDei~~~d~~~ 583 (788)
T PF10070_consen 541 LLNDPEVREGLAERGIDIPDDTWFVAALHNTTTDEITLFDLDL 583 (788)
T ss_pred HhCCHHHHHHHHHcCCCCCCCCEEEEeeecCccceEEEEcCCC
Confidence 4455666666665444 468999999999999998875
No 18
>COG1254 AcyP Acylphosphatases [Energy production and conversion]
Probab=58.65 E-value=8.3 Score=30.11 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.9
Q ss_pred eeEEEEEEEccCCEEEEEe
Q 023668 250 LALKGAHYDFVNGKFELWD 268 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~~ 268 (279)
+.|+||+++..+|.|+.+-
T Consensus 30 lgl~G~V~N~~DGsVeiva 48 (92)
T COG1254 30 LGLTGWVKNLDDGSVEIVA 48 (92)
T ss_pred CCCEEEEEECCCCeEEEEE
Confidence 6799999999999999764
No 19
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for
Probab=36.46 E-value=48 Score=24.83 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=21.1
Q ss_pred ceeEEEEEEEccC--CEEEEEeccCCCC
Q 023668 249 TLALKGAHYDFVN--GKFELWDLDFNIL 274 (279)
Q Consensus 249 ~l~I~G~vYDi~t--G~v~~~~~~~~~~ 274 (279)
++.|+||++.+.. |++.|+++.-+.+
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g 28 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG 28 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC
Confidence 3689999999997 6899998866554
No 20
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=35.82 E-value=1.1e+02 Score=19.74 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcCCCChHHHHHHHHHH
Q 023668 30 EDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGF 79 (279)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~Ll~gN 79 (279)
++.+..|+.++ ++++. +.+.+-|+........+++.|++++
T Consensus 2 ~~~v~~L~~mF---P~~~~------~~I~~~L~~~~~~ve~ai~~LL~~~ 42 (42)
T PF02845_consen 2 EEMVQQLQEMF---PDLDR------EVIEAVLQANNGDVEAAIDALLEMS 42 (42)
T ss_dssp HHHHHHHHHHS---SSS-H------HHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC---CCCCH------HHHHHHHHHcCCCHHHHHHHHHcCC
Confidence 45677777776 33333 3344555554445567888888875
No 21
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=35.20 E-value=13 Score=28.03 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=13.5
Q ss_pred eEEEEEEEccCCEEEE
Q 023668 251 ALKGAHYDFVNGKFEL 266 (279)
Q Consensus 251 ~I~G~vYDi~tG~v~~ 266 (279)
..|||.||+.||++..
T Consensus 65 p~Hg~~Fd~~tG~~~~ 80 (97)
T PF00355_consen 65 PCHGWRFDLDTGECVG 80 (97)
T ss_dssp TTTTEEEETTTSBEEE
T ss_pred CCcCCEEeCCCceEec
Confidence 4799999999998653
No 22
>PRK14066 exodeoxyribonuclease VII small subunit; Provisional
Probab=34.90 E-value=66 Score=24.12 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHHhhc--ccCCchh
Q 023668 24 MANDAYEDAIAGLTKLLS--EKSDLEG 48 (279)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~--~~~~~~~ 48 (279)
|...+||+|+.+|.++++ |+++++.
T Consensus 1 m~~~~fEeal~~LE~IV~~LE~g~l~L 27 (75)
T PRK14066 1 MAVEKFETALKKLEEVVKKLEGGELSL 27 (75)
T ss_pred CccccHHHHHHHHHHHHHHHHCCCCCH
Confidence 677899999999988776 4555554
No 23
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=34.39 E-value=1.6e+02 Score=24.07 Aligned_cols=79 Identities=18% Similarity=0.113 Sum_probs=58.6
Q ss_pred hhcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEeccCCCCcc
Q 023668 97 LAKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGI 176 (279)
Q Consensus 97 la~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai 176 (279)
+..|-.|.+.++-.==-|-+...... .....+.++|..+.+.. +...+|..|+..-+--.|+|-|-.|=-++
T Consensus 6 l~~g~~P~laIvD~kTkR~~~~~~~~-~~~~~i~v~NPpG~It~-------el~~ai~~a~~~~~~~~I~V~GEEDL~~l 77 (121)
T PF04019_consen 6 LEAGIIPDLAIVDGKTKREPVVEEVR-KFYRVIEVKNPPGTITE-------ELIEAIKKALESGKPVVIFVDGEEDLAVL 77 (121)
T ss_pred HhCCCCCCEEEEeCcccccCCccccc-CCceEEEEECCCCcccH-------HHHHHHHHHHhCCCCEEEEEeChHHHHHH
Confidence 45788999999988888877654433 55678999999999975 35668888877766678888888777666
Q ss_pred ccccCCC
Q 023668 177 KGLMSIP 183 (279)
Q Consensus 177 ~a~~~~~ 183 (279)
-+.+..+
T Consensus 78 Pail~aP 84 (121)
T PF04019_consen 78 PAILYAP 84 (121)
T ss_pred HHHHhCC
Confidence 5554433
No 24
>PRK11440 putative hydrolase; Provisional
Probab=32.10 E-value=92 Score=26.56 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=30.7
Q ss_pred cCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEeccCCCCcc
Q 023668 121 LNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGI 176 (279)
Q Consensus 121 l~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai 176 (279)
+...+||.++.++--+-... + .|+.-+...|+++|||+|=+-..-|
T Consensus 90 l~~~~~d~vi~K~~~saF~~--------T--~L~~~L~~~gi~~lii~Gv~T~~CV 135 (188)
T PRK11440 90 LGKTDSDIEVTKRQWGAFYG--------T--DLELQLRRRGIDTIVLCGISTNIGV 135 (188)
T ss_pred cCCCCCCEEEecCCcCCCCC--------C--CHHHHHHHCCCCEEEEeeechhHHH
Confidence 45668898777775444322 1 3566677899999999996544443
No 25
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=31.74 E-value=29 Score=29.38 Aligned_cols=13 Identities=46% Similarity=0.861 Sum_probs=12.0
Q ss_pred cceEEEeccCCCC
Q 023668 162 VENIVVIGHSCCG 174 (279)
Q Consensus 162 V~~IVV~GHs~CG 174 (279)
+.+|.|+||.++|
T Consensus 3 ~~~I~i~G~~~sG 15 (188)
T PF00009_consen 3 IRNIAIIGHVDSG 15 (188)
T ss_dssp EEEEEEEESTTSS
T ss_pred EEEEEEECCCCCC
Confidence 5789999999999
No 26
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=28.67 E-value=22 Score=26.91 Aligned_cols=16 Identities=31% Similarity=0.544 Sum_probs=13.6
Q ss_pred eeEEEEEEEccCCEEE
Q 023668 250 LALKGAHYDFVNGKFE 265 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~ 265 (279)
-..|||.||+.||+..
T Consensus 60 Cp~Hg~~fd~~~G~~~ 75 (98)
T cd03528 60 CPLHGGRFDLRTGKAL 75 (98)
T ss_pred eCCcCCEEECCCCccc
Confidence 3589999999999864
No 27
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=28.26 E-value=19 Score=27.25 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=13.1
Q ss_pred eEEEEEEEccCCEEE
Q 023668 251 ALKGAHYDFVNGKFE 265 (279)
Q Consensus 251 ~I~G~vYDi~tG~v~ 265 (279)
..|||.||+.||++.
T Consensus 60 P~Hg~~Fdl~tG~~~ 74 (95)
T cd03478 60 PWHGACFNLRTGDIE 74 (95)
T ss_pred CCCCCEEECCCCcCc
Confidence 489999999999854
No 28
>PRK14432 acylphosphatase; Provisional
Probab=28.07 E-value=44 Score=25.88 Aligned_cols=19 Identities=26% Similarity=0.473 Sum_probs=16.6
Q ss_pred eeEEEEEEEccCCEEEEEe
Q 023668 250 LALKGAHYDFVNGKFELWD 268 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~~ 268 (279)
+.|+||+.+..+|.|+.+-
T Consensus 28 lgl~G~V~N~~dG~Vei~~ 46 (93)
T PRK14432 28 MKLKGFVKNLNDGRVEIVA 46 (93)
T ss_pred hCCEEEEEECCCCCEEEEE
Confidence 6699999999999988754
No 29
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=28.04 E-value=39 Score=28.66 Aligned_cols=13 Identities=38% Similarity=0.669 Sum_probs=12.2
Q ss_pred cceEEEeccCCCC
Q 023668 162 VENIVVIGHSCCG 174 (279)
Q Consensus 162 V~~IVV~GHs~CG 174 (279)
+++|+++||+++|
T Consensus 2 ~r~i~ivG~~~~G 14 (194)
T cd01891 2 IRNIAIIAHVDHG 14 (194)
T ss_pred ccEEEEEecCCCC
Confidence 6799999999999
No 30
>PF08184 Cuticle_2: Cuticle protein 7 isoform family; InterPro: IPR012540 This family consists of cuticle protein 7 isoforms that are isolated from the carapace cuticle of a juvenile horseshoe crab, Limulus polyphemus. There are 3 isoforms of cuticle protein 7. The 3 isoforms are N-terminally blocked but could be deblocked by treatment with pyroglutaminase, showing that the N-terminal residue is a pyroglutamine residue [].; GO: 0042302 structural constituent of cuticle
Probab=27.92 E-value=29 Score=24.00 Aligned_cols=13 Identities=31% Similarity=0.652 Sum_probs=11.2
Q ss_pred EEEEEEccCCEEE
Q 023668 253 KGAHYDFVNGKFE 265 (279)
Q Consensus 253 ~G~vYDi~tG~v~ 265 (279)
-|.-||++||.|.
T Consensus 7 ngytydietgqvs 19 (59)
T PF08184_consen 7 NGYTYDIETGQVS 19 (59)
T ss_pred CCcEEEeccceec
Confidence 4789999999886
No 31
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=27.74 E-value=61 Score=23.21 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=21.4
Q ss_pred HHHHhcChhHHHhhhCCceeEEEE
Q 023668 232 LGNLLTYPFVRESVVKNTLALKGA 255 (279)
Q Consensus 232 v~~L~~~p~v~~~v~~g~l~I~G~ 255 (279)
|..|.+||-+-+.+.+|++.+.|.
T Consensus 6 V~YLv~nPevl~kl~~g~asLIGv 29 (57)
T PF05952_consen 6 VNYLVQNPEVLEKLKEGEASLIGV 29 (57)
T ss_pred HHHHHHChHHHHHHHcCCeeEecC
Confidence 677889999999999999999884
No 32
>PF08822 DUF1804: Protein of unknown function (DUF1804); InterPro: IPR014926 This entry is represented by Bacteriophage D3112, Orf24. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.27 E-value=1.5e+02 Score=25.70 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHhhcccCCchhhHHHhHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 023668 27 DAYEDAIAGLTKLLSEKSDLEGIAAAKIKQITADLEAAGSRDIDPAERMKTGFIQ 81 (279)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~l~~Ll~gN~r 81 (279)
+||..+++.-++++=|..+|.. |...++.|++-++...+.-...+-++++.|..
T Consensus 106 Dsf~K~vaaskr~lPets~Lav-A~~vl~~l~~fv~e~~P~h~~af~eiLepFg~ 159 (165)
T PF08822_consen 106 DSFSKMVAASKRVLPETSELAV-AMEVLELLAAFVQERYPQHLAAFLEILEPFGE 159 (165)
T ss_pred HHHHHHHHHHhhcCchHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4455555555555544444432 44444444444444432233344444444433
No 33
>PRK14440 acylphosphatase; Provisional
Probab=26.86 E-value=50 Score=25.38 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=16.3
Q ss_pred eeEEEEEEEccCCEEEEEe
Q 023668 250 LALKGAHYDFVNGKFELWD 268 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~~ 268 (279)
+.|.||+.+..+|.|+.+-
T Consensus 29 ~gl~G~V~N~~dG~Vei~~ 47 (90)
T PRK14440 29 LGIKGYAKNLPDGSVEVVA 47 (90)
T ss_pred cCCEEEEEECCCCCEEEEE
Confidence 6699999999999888643
No 34
>COG3002 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.49 E-value=1.4e+02 Score=31.52 Aligned_cols=19 Identities=11% Similarity=0.235 Sum_probs=13.0
Q ss_pred EEEEEEEccCCEEEEEecc
Q 023668 252 LKGAHYDFVNGKFELWDLD 270 (279)
Q Consensus 252 I~G~vYDi~tG~v~~~~~~ 270 (279)
...+..+..|-.+.++++.
T Consensus 626 FaaalHnTTtdelh~~dv~ 644 (880)
T COG3002 626 FAAALHNTTTDELHWFDVP 644 (880)
T ss_pred eeeccccCchhheeeeehh
Confidence 4455667777778777765
No 35
>PRK14430 acylphosphatase; Provisional
Probab=26.30 E-value=50 Score=25.51 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.8
Q ss_pred eeEEEEEEEccCCEEEEE
Q 023668 250 LALKGAHYDFVNGKFELW 267 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~ 267 (279)
+.|.||+.+..+|+|+.+
T Consensus 30 lgl~G~VrN~~dGsVei~ 47 (92)
T PRK14430 30 LGLGGWVRNRADGTVEVM 47 (92)
T ss_pred hCCEEEEEECCCCcEEEE
Confidence 669999999999998854
No 36
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=25.99 E-value=58 Score=27.07 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=24.5
Q ss_pred chHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 023668 148 GAGAAIEYAVLHLKVENIVVIGHSCCGGIKG 178 (279)
Q Consensus 148 ~~~asLEyAv~~L~V~~IVV~GHs~CGai~a 178 (279)
.+.+.+++-...|+++.|.++|||- ||.-+
T Consensus 29 ~~~~~~~~~~~~l~~~~~~~vG~S~-Gg~~~ 58 (230)
T PF00561_consen 29 DLAADLEALREALGIKKINLVGHSM-GGMLA 58 (230)
T ss_dssp HHHHHHHHHHHHHTTSSEEEEEETH-HHHHH
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECC-ChHHH
Confidence 4667889999999999999999976 65443
No 37
>KOG2781 consensus U3 small nucleolar ribonucleoprotein (snoRNP) component [RNA processing and modification]
Probab=25.96 E-value=2.8e+02 Score=25.80 Aligned_cols=64 Identities=17% Similarity=0.208 Sum_probs=34.8
Q ss_pred hcCCCCceEEeeccCCCCChhhhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEecc
Q 023668 98 AKGQSPKFLVFACSDSRVCPSHILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGH 170 (279)
Q Consensus 98 a~gQ~P~~lvitCsDSRV~pe~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GH 170 (279)
+.-+-|+++|-|- |=|-+.+..+.--=-+|+=|+-++-... + +...|--|+..-++..+||++-
T Consensus 78 ag~~dPKimvTTS---R~PSsrL~~FaKelkLvfPNaqr~nRG~----~--~~~~lv~a~ra~~~Td~iivHE 141 (290)
T KOG2781|consen 78 AGEEDPKIMVTTS---RDPSSRLKMFAKELKLVFPNAQRLNRGN----Y--VVGELVDAARANGVTDLIIVHE 141 (290)
T ss_pred ccCCCCcEEEEeC---CCchHHHHHHHHhheEeccChhhhcccc----e--eHHHHHHHHHHCCCceEEEEec
Confidence 4557899888774 4443333333222234554554443211 0 2335556888889888777743
No 38
>PRK14423 acylphosphatase; Provisional
Probab=25.85 E-value=62 Score=24.89 Aligned_cols=20 Identities=20% Similarity=0.237 Sum_probs=16.9
Q ss_pred ceeEEEEEEEccCCEEEEEe
Q 023668 249 TLALKGAHYDFVNGKFELWD 268 (279)
Q Consensus 249 ~l~I~G~vYDi~tG~v~~~~ 268 (279)
++.|.||+.+..+|.|+.+-
T Consensus 30 ~lgl~G~V~N~~dG~Vei~~ 49 (92)
T PRK14423 30 ELGVDGWVRNLDDGRVEAVF 49 (92)
T ss_pred HcCCEEEEEECCCCeEEEEE
Confidence 37799999999999988653
No 39
>PRK14445 acylphosphatase; Provisional
Probab=25.59 E-value=66 Score=24.68 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=16.3
Q ss_pred ceeEEEEEEEccCCEEEEE
Q 023668 249 TLALKGAHYDFVNGKFELW 267 (279)
Q Consensus 249 ~l~I~G~vYDi~tG~v~~~ 267 (279)
++.|.||+.+..+|.|+.+
T Consensus 29 ~~gl~G~V~N~~dG~Vei~ 47 (91)
T PRK14445 29 ELNLSGWVRNLPDGTVEIE 47 (91)
T ss_pred hCCCEEEEEECCCCeEEEE
Confidence 3679999999999988854
No 40
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=24.59 E-value=46 Score=30.71 Aligned_cols=14 Identities=36% Similarity=0.691 Sum_probs=12.1
Q ss_pred cceEEEeccCCCCc
Q 023668 162 VENIVVIGHSCCGG 175 (279)
Q Consensus 162 V~~IVV~GHs~CGa 175 (279)
-+-|-|+|||+||=
T Consensus 29 GEfvsilGpSGcGK 42 (248)
T COG1116 29 GEFVAILGPSGCGK 42 (248)
T ss_pred CCEEEEECCCCCCH
Confidence 37789999999994
No 41
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=24.26 E-value=1.1e+02 Score=29.33 Aligned_cols=40 Identities=23% Similarity=0.319 Sum_probs=30.2
Q ss_pred hhcCCCCCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEec
Q 023668 119 HILNFQPGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIG 169 (279)
Q Consensus 119 ~il~~~pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~G 169 (279)
++-++++|| .||.|.||-. ++.++---+..+|++.|=|+-
T Consensus 154 dfv~L~~GD-~vIQNganS~----------VG~~ViQlaka~GiktinvVR 193 (354)
T KOG0025|consen 154 DFVQLNKGD-SVIQNGANSG----------VGQAVIQLAKALGIKTINVVR 193 (354)
T ss_pred HHHhcCCCC-eeeecCcccH----------HHHHHHHHHHHhCcceEEEee
Confidence 466899999 7899999964 444444456789999987764
No 42
>PF10500 SR-25: Nuclear RNA-splicing-associated protein; InterPro: IPR019532 SR-25, otherwise known as ADP-ribosylation factor-like factor 6-interacting protein 4, is expressed in virtually all tissue types. At the N terminus there is a repeat of serine-arginine (SR repeat), and towards the middle of the protein there are clusters of both serines and of basic amino acids. The presence of many nuclear localisation signals strongly implies that this is a nuclear protein that may contribute to RNA splicing []. SR-25 is also implicated, along with heat-shock-protein-27, as a mediator in the Rac1 (GTPase ras-related C3 botulinum toxin substrate 1; also see IPR019093 from INTERPRO) signalling pathway [].
Probab=24.02 E-value=33 Score=31.11 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=33.7
Q ss_pred HHHHHHhc-ChhHHHhhhCCceeEEEEEEEccCCEEEEEeccCCCCC
Q 023668 230 VSLGNLLT-YPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNILP 275 (279)
Q Consensus 230 ~~v~~L~~-~p~v~~~v~~g~l~I~G~vYDi~tG~v~~~~~~~~~~~ 275 (279)
.|-..|.+ -|.-++.|+.. -.|.=.|||.+||+.+++.-|+.+-+
T Consensus 149 eqksr~~am~PmTkEEyear-QSvIRrVvDpETGRtRLIkGdGEilE 194 (225)
T PF10500_consen 149 EQKSRIQAMAPMTKEEYEAR-QSVIRRVVDPETGRTRLIKGDGEILE 194 (225)
T ss_pred chhhhhhhcCCCCHHHHHHH-HhhheeeecCCCCceeeecccchHHH
Confidence 34455555 38888888765 45777999999999999988887644
No 43
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=23.82 E-value=45 Score=27.35 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=11.0
Q ss_pred ceEEEeccCCCC
Q 023668 163 ENIVVIGHSCCG 174 (279)
Q Consensus 163 ~~IVV~GHs~CG 174 (279)
++|+++||+++|
T Consensus 1 rni~~vG~~~~G 12 (179)
T cd01890 1 RNFSIIAHIDHG 12 (179)
T ss_pred CcEEEEeecCCC
Confidence 479999999999
No 44
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=23.72 E-value=32 Score=26.56 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=13.1
Q ss_pred eEEEEEEEccCCEEE
Q 023668 251 ALKGAHYDFVNGKFE 265 (279)
Q Consensus 251 ~I~G~vYDi~tG~v~ 265 (279)
..|||.||+.||+..
T Consensus 63 P~Hg~~Fdl~tG~~~ 77 (101)
T TIGR02377 63 PKHAGCFDYRTGEAL 77 (101)
T ss_pred CccCCEEECCCCccc
Confidence 489999999999864
No 45
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=23.29 E-value=44 Score=27.35 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.2
Q ss_pred eeEEEEEEEccCCEEEEE
Q 023668 250 LALKGAHYDFVNGKFELW 267 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~ 267 (279)
-..|||-||+.||++..+
T Consensus 76 Cp~Hgw~Fdl~tG~~~~~ 93 (136)
T cd03548 76 CWYHGWTYRLDDGKLVTI 93 (136)
T ss_pred ecCCccEEeCCCccEEEc
Confidence 358999999999998754
No 46
>PRK14429 acylphosphatase; Provisional
Probab=22.79 E-value=72 Score=24.38 Aligned_cols=18 Identities=22% Similarity=0.392 Sum_probs=15.9
Q ss_pred eeEEEEEEEccCCEEEEE
Q 023668 250 LALKGAHYDFVNGKFELW 267 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~ 267 (279)
+.|.||+.+..+|.|+.+
T Consensus 28 ~gl~G~V~N~~dG~Vei~ 45 (90)
T PRK14429 28 LGVTGYVTNCEDGSVEIL 45 (90)
T ss_pred hCCEEEEEECCCCeEEEE
Confidence 669999999999988854
No 47
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=22.74 E-value=32 Score=26.56 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=13.3
Q ss_pred eeEEEEEEEccCCEEE
Q 023668 250 LALKGAHYDFVNGKFE 265 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~ 265 (279)
-..|||.||+.||+..
T Consensus 67 Cp~Hg~~Fdl~tG~~~ 82 (105)
T TIGR02378 67 CPLHKRNFRLEDGRCL 82 (105)
T ss_pred CCcCCCEEEcCCcccc
Confidence 3489999999999754
No 48
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=22.25 E-value=49 Score=26.69 Aligned_cols=12 Identities=17% Similarity=0.587 Sum_probs=10.6
Q ss_pred eEEEeccCCCCc
Q 023668 164 NIVVIGHSCCGG 175 (279)
Q Consensus 164 ~IVV~GHs~CGa 175 (279)
+|+|+||++||=
T Consensus 1 ~i~~vG~~~~GK 12 (167)
T cd04160 1 SVLILGLDNAGK 12 (167)
T ss_pred CEEEEecCCCCH
Confidence 489999999994
No 49
>PRK14451 acylphosphatase; Provisional
Probab=22.23 E-value=67 Score=24.62 Aligned_cols=19 Identities=21% Similarity=0.548 Sum_probs=16.4
Q ss_pred eeEEEEEEEccCCEEEEEe
Q 023668 250 LALKGAHYDFVNGKFELWD 268 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~~ 268 (279)
+.|+||+.+..+|.|+..-
T Consensus 29 ~gl~G~V~N~~dG~Vei~~ 47 (89)
T PRK14451 29 LMISGWARNLADGRVEVFA 47 (89)
T ss_pred hCCEEEEEECCCCCEEEEE
Confidence 6699999999999998643
No 50
>PRK14448 acylphosphatase; Provisional
Probab=22.11 E-value=66 Score=24.67 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.9
Q ss_pred eeEEEEEEEccCCEEEEE
Q 023668 250 LALKGAHYDFVNGKFELW 267 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~ 267 (279)
+.|.||+.+..+|.|+.+
T Consensus 28 lgl~G~V~N~~dG~Vei~ 45 (90)
T PRK14448 28 IGIKGYVKNRPDGSVEVV 45 (90)
T ss_pred hCCEEEEEECCCCCEEEE
Confidence 669999999999998864
No 51
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=22.04 E-value=31 Score=26.62 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.9
Q ss_pred eEEEEEEEccCCEEE
Q 023668 251 ALKGAHYDFVNGKFE 265 (279)
Q Consensus 251 ~I~G~vYDi~tG~v~ 265 (279)
..|||.||+.||+..
T Consensus 67 p~Hg~~Fdl~tG~~~ 81 (103)
T cd03529 67 PLYKQHFSLKTGRCL 81 (103)
T ss_pred CCCCCEEEcCCCCcc
Confidence 479999999999853
No 52
>PF01707 Peptidase_C9: Peptidase family C9; InterPro: IPR002620 The family of alphaviruses includes 26 known members. They infect a variety of hosts including mosquitoes, birds, rodents and other mammals with worldwide distribution. Alphaviruses also pose a potential threat to human health in many area. For example, Venezuelan Equine Encephalitis Virus (VEEV) causes encephalitis in humans as well as livestock in Central and South America, and some variants of Sinbis Virus (SIN) and Semliki Forest Virus (SFV) have been found to cause fever and arthritis in humans []. Alphaviruses possess a single-stranded RNA genome of approximately 12 kb. The genomic RNA of alphaviruses is translated into two polyproteins that, respectively, encode structural proteins and nonstructural proteins. The nonstructural proteins may be translated as one or two polyproteins, nsp123 or nsp1234, depending on the virus. These polyproteins are cleaved to generate nsp1, nsp2, nsp3 and nsp4 by a protease activity that resides within nsp2 []. The nsp2 protein of alphaviruses has multiple enzymatic acivities. Its N-terminal domain has been shown to possess ATPase and GTPase activity, RNA helicase activity and RNA 5'-triphosphatase activity []. The C-terminal nsp2pro domain of nsp2 is responsible for the regulation of 26S subgenome RNA synthesis, switching between negative- and positive-strand RNA synthesis, targeting nsp2 for nuclear transport and proteolytic processing of the nonstructural polyprotein [, ]. The nsp2pro domain is a member of peptidase family C9 of clan CA. The nsp2pro domain consists of two distinct subdomains. The nsp2pro N-terminal subdomain is largely alpha-helical and contains the catalytic dyad cysteine and histidine residues organised in a protein fold that differs significantly from any known cysteine protease or protein folds. The nsp2pro C-terminal subdomain displays structural similarity to S-adenosyl- L-methionine-dependent RNA methyltransferases and provides essential elements that contribute to substrate recognition and may also regulate the structure of the substrate binding cleft []. This entry represents the nsp2pro domain.; PDB: 3TRK_A 2HWK_A.
Probab=21.91 E-value=40 Score=29.95 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=23.2
Q ss_pred HHH-hcChhHHHhhhCCceeEEEEEEEccCCEEEEEeccCCC
Q 023668 233 GNL-LTYPFVRESVVKNTLALKGAHYDFVNGKFELWDLDFNI 273 (279)
Q Consensus 233 ~~L-~~~p~v~~~v~~g~l~I~G~vYDi~tG~v~~~~~~~~~ 273 (279)
+.| +.||+++.+++. |-.+|+.+|++..++..-.+
T Consensus 138 ~~l~~r~P~l~~a~~~------g~q~dv~~g~~~~~~~~~N~ 173 (202)
T PF01707_consen 138 RELERRYPFLRKAWKT------GRQLDVSTGRLQPYSPTCNL 173 (202)
T ss_dssp HHHHCC-CCHCCHCCC------T-EEETTTTCEES--TTS--
T ss_pred HHHHHhCchhhhcccc------CeeEeecCCceecCCCcccc
Confidence 345 689999998765 57899999999977665543
No 53
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=21.64 E-value=37 Score=26.87 Aligned_cols=16 Identities=31% Similarity=0.573 Sum_probs=13.6
Q ss_pred eeEEEEEEEccCCEEE
Q 023668 250 LALKGAHYDFVNGKFE 265 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~ 265 (279)
-..||+.||+.||+..
T Consensus 66 Cp~H~a~Fdl~tG~~~ 81 (106)
T COG2146 66 CPLHGARFDLRTGECL 81 (106)
T ss_pred CCccCCEEEcCCCcee
Confidence 3589999999999854
No 54
>PRK14441 acylphosphatase; Provisional
Probab=21.27 E-value=94 Score=23.96 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=16.8
Q ss_pred ceeEEEEEEEccCCEEEEEe
Q 023668 249 TLALKGAHYDFVNGKFELWD 268 (279)
Q Consensus 249 ~l~I~G~vYDi~tG~v~~~~ 268 (279)
++.|.||+.+..+|+|+.+-
T Consensus 30 ~lgL~G~V~N~~dG~Vei~~ 49 (93)
T PRK14441 30 RLGVEGWVRNLPDGRVEAEA 49 (93)
T ss_pred hcCcEEEEEECCCCEEEEEE
Confidence 47799999999999888543
No 55
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=21.10 E-value=1.3e+02 Score=24.48 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=22.6
Q ss_pred cCCCCCcEEEE-eccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEec
Q 023668 121 LNFQPGEAFMV-RNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIG 169 (279)
Q Consensus 121 l~~~pGe~FVv-RNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~G 169 (279)
.+.+|||++++ -+-||-- .+..++++| ...|.+.|.|.|
T Consensus 99 ~~~~~gDvli~iS~SG~s~---------~vi~a~~~A-k~~G~~vIalTg 138 (138)
T PF13580_consen 99 YDIRPGDVLIVISNSGNSP---------NVIEAAEEA-KERGMKVIALTG 138 (138)
T ss_dssp TT--TT-EEEEEESSS-SH---------HHHHHHHHH-HHTT-EEEEEEE
T ss_pred cCCCCCCEEEEECCCCCCH---------HHHHHHHHH-HHCCCEEEEEeC
Confidence 45899997654 5556652 256778877 567888888765
No 56
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=20.98 E-value=2e+02 Score=23.64 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=33.3
Q ss_pred CCcEEEEeccCCcCCCCCCccccchHHHHHHHHHhcCcceEEEeccCCCCcccc
Q 023668 125 PGEAFMVRNIANMVPPYDQKKYSGAGAAIEYAVLHLKVENIVVIGHSCCGGIKG 178 (279)
Q Consensus 125 pGe~FVvRNaGN~V~~~d~~~~s~~~asLEyAv~~L~V~~IVV~GHs~CGai~a 178 (279)
+||..+.|+--|..... -|+.-+...|+++|+|+|-.-.+-|.+
T Consensus 85 ~~~~vi~K~~~saf~~t----------~L~~~L~~~gi~~vil~G~~t~~CV~~ 128 (174)
T PF00857_consen 85 PGDPVIEKNRYSAFFGT----------DLDEILRKRGIDTVILCGVATDVCVLA 128 (174)
T ss_dssp TTSEEEEESSSSTTTTS----------SHHHHHHHTTESEEEEEEESTTTHHHH
T ss_pred cccceEEeecccccccc----------cccccccccccceEEEcccccCcEEeh
Confidence 39999999976665321 255667889999999999887777654
No 57
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=20.83 E-value=35 Score=27.44 Aligned_cols=16 Identities=13% Similarity=0.048 Sum_probs=14.0
Q ss_pred eeEEEEEEEccCCEEE
Q 023668 250 LALKGAHYDFVNGKFE 265 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~ 265 (279)
-..|||-||+.||+..
T Consensus 70 CP~Hg~~FDLrTG~~~ 85 (107)
T cd03473 70 CTKHNWKLDVSTMKYV 85 (107)
T ss_pred eCCCCCEEEcCCCCCc
Confidence 4589999999999975
No 58
>PRK14425 acylphosphatase; Provisional
Probab=20.82 E-value=83 Score=24.36 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=16.4
Q ss_pred eeEEEEEEEccCCEEEEEe
Q 023668 250 LALKGAHYDFVNGKFELWD 268 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~~ 268 (279)
+.|.||+.+..+|.|+.+-
T Consensus 32 ~gl~G~V~N~~dGsVei~~ 50 (94)
T PRK14425 32 LGLTGWVRNESDGSVTALI 50 (94)
T ss_pred hCCEEEEEECCCCeEEEEE
Confidence 5699999999999998653
No 59
>PRK14426 acylphosphatase; Provisional
Probab=20.74 E-value=80 Score=24.27 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=15.8
Q ss_pred eeEEEEEEEccCCEEEEE
Q 023668 250 LALKGAHYDFVNGKFELW 267 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~ 267 (279)
+.|.||+.+..+|.|+.+
T Consensus 30 ~gl~G~V~N~~dG~Vei~ 47 (92)
T PRK14426 30 LGLTGYAKNLDDGSVEVV 47 (92)
T ss_pred hCCEEEEEECCCCcEEEE
Confidence 669999999999988854
No 60
>PRK14068 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.65 E-value=1.6e+02 Score=22.10 Aligned_cols=23 Identities=9% Similarity=0.381 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHhhc--ccCCchh
Q 023668 26 NDAYEDAIAGLTKLLS--EKSDLEG 48 (279)
Q Consensus 26 ~~~~~~~~~~~~~~~~--~~~~~~~ 48 (279)
+.|||+|+++|.+++. +.++++.
T Consensus 5 ~~sfEeal~~Le~IV~~LE~gdl~L 29 (76)
T PRK14068 5 TQSFEEMMQELEQIVQKLDNETVSL 29 (76)
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCCH
Confidence 4589999999987775 4444444
No 61
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=20.50 E-value=68 Score=27.22 Aligned_cols=16 Identities=13% Similarity=0.378 Sum_probs=13.5
Q ss_pred cCcceEEEeccCCCCc
Q 023668 160 LKVENIVVIGHSCCGG 175 (279)
Q Consensus 160 L~V~~IVV~GHs~CGa 175 (279)
-++..|+|+|+++||=
T Consensus 39 ~~~~~I~iiG~~g~GK 54 (204)
T cd01878 39 SGIPTVALVGYTNAGK 54 (204)
T ss_pred cCCCeEEEECCCCCCH
Confidence 3468999999999993
No 62
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=20.29 E-value=41 Score=26.04 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=12.9
Q ss_pred eeEEEEEEEccCCEE
Q 023668 250 LALKGAHYDFVNGKF 264 (279)
Q Consensus 250 l~I~G~vYDi~tG~v 264 (279)
-..|||.||+.||..
T Consensus 61 CP~Hg~~Fdl~~G~~ 75 (108)
T cd03474 61 CRAHLWQFDADTGEG 75 (108)
T ss_pred eCCcCCEEECCCccc
Confidence 358999999999974
No 63
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=20.28 E-value=36 Score=26.85 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=13.4
Q ss_pred eeEEEEEEEccCCEEE
Q 023668 250 LALKGAHYDFVNGKFE 265 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~ 265 (279)
-..|||.||+.||+..
T Consensus 70 CP~H~~~Fdl~TG~~~ 85 (108)
T PRK09511 70 SPLKKQRFRLSDGLCM 85 (108)
T ss_pred CCCCCCEEECCCcccC
Confidence 3589999999999754
No 64
>PRK14436 acylphosphatase; Provisional
Probab=20.17 E-value=88 Score=24.05 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=16.3
Q ss_pred eeEEEEEEEccCCEEEEEe
Q 023668 250 LALKGAHYDFVNGKFELWD 268 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~~ 268 (279)
+.|.||+.+..+|.|+.+-
T Consensus 30 l~l~G~V~N~~dG~Vei~~ 48 (91)
T PRK14436 30 LGVNGWVRNLPDGSVEAVL 48 (91)
T ss_pred cCCEEEEEECCCCcEEEEE
Confidence 6699999999999988643
No 65
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=20.11 E-value=83 Score=20.38 Aligned_cols=18 Identities=33% Similarity=0.578 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHHHhhc
Q 023668 24 MANDAYEDAIAGLTKLLS 41 (279)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~ 41 (279)
|.++.|++|++++++-|.
T Consensus 12 le~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 12 LENENFEQAIEDYEKALE 29 (38)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 567889999999988875
No 66
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=20.10 E-value=98 Score=27.31 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.3
Q ss_pred chHHHHHHHHHhcCcceEEEeccC
Q 023668 148 GAGAAIEYAVLHLKVENIVVIGHS 171 (279)
Q Consensus 148 ~~~asLEyAv~~L~V~~IVV~GHs 171 (279)
+..+-||||...|++..|+||=|-
T Consensus 120 ~lvalLEfAEekl~~d~Vfi~F~K 143 (191)
T KOG4387|consen 120 GLVALLEFAEEKLHVDKVFICFDK 143 (191)
T ss_pred hHHHHHHHHHHhhccceEEEEEec
Confidence 577899999999999999999764
No 67
>PRK14449 acylphosphatase; Provisional
Probab=20.06 E-value=92 Score=23.81 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.4
Q ss_pred eeEEEEEEEccCCEEEEEe
Q 023668 250 LALKGAHYDFVNGKFELWD 268 (279)
Q Consensus 250 l~I~G~vYDi~tG~v~~~~ 268 (279)
+.|.||+.+..+|.|+.+-
T Consensus 29 lgl~G~V~N~~dG~Vei~~ 47 (90)
T PRK14449 29 LGITGYAENLYDGSVEVVA 47 (90)
T ss_pred cCCEEEEEECCCCeEEEEE
Confidence 6699999999999988643
No 68
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=20.03 E-value=60 Score=28.15 Aligned_cols=13 Identities=31% Similarity=0.593 Sum_probs=11.1
Q ss_pred ceEEEeccCCCCc
Q 023668 163 ENIVVIGHSCCGG 175 (279)
Q Consensus 163 ~~IVV~GHs~CGa 175 (279)
++|+|+||.++|=
T Consensus 1 rnv~iiG~~~~GK 13 (213)
T cd04167 1 RNVAIAGHLHHGK 13 (213)
T ss_pred CcEEEEcCCCCCH
Confidence 4789999999993
Done!