BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023669
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03441|RMD1_YEAST Sporulation protein RMD1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RMD1 PE=1 SV=1
Length = 430
Score = 63.2 bits (152), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 108/231 (46%), Gaps = 23/231 (9%)
Query: 46 MVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKE---------KPLLA 96
+ +F YG V++ + E + +L+ I + L E +D ++E +P +
Sbjct: 205 LFIFEYGVVVMWGFTEREEKAFLNDIEKFEKEKLAE---EDIQVEEFNYYVTKSYQPRIY 261
Query: 97 ED---MQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKT 153
D ++ G +Y+V + I + QS+ + F VD +E+ I + + +
Sbjct: 262 NDFITLRDGSNYMVKLS--------ISHAIAQSVKISLFEELVDNTIEDTQDIPQEIAYS 313
Query: 154 GTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRF 213
G +M + +++ +G+ ++ L + + EI W + + IY+ R E+ QR
Sbjct: 314 GKVSMSKEDIMKSIGELFILRININLHGSVLDSPEIMWSEPQLEPIYQATRGYLEINQRV 373
Query: 214 GNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRD 264
L+ +L+ + + L+E + + + LE+ +I L+ +E +ISV IV D
Sbjct: 374 SLLNQRLEVISDLLQMLKEQLGHSHEEYLEFIVILLVGVEVLISVINIVVD 424
>sp|O74446|SIF2_SCHPO Sad1-interacting factor 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=sif2 PE=1 SV=2
Length = 382
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 119/268 (44%), Gaps = 10/268 (3%)
Query: 4 ENLTHVVPPSSRSTKYIALRYSDFPSEISAL---GVHGNVSHCRYMVVFHYGSAVLFNIE 60
E T ++P + S++ R S S S G+ N R + F YG VL+
Sbjct: 113 EETTDLLPDTLESSRGTLNRESSQESLQSIFEESGLDRNQPLFREVFCFTYGVVVLWGYT 172
Query: 61 DHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGP---DYIVLKNLDTDSVR 117
E +L + R + +++ +D ++E + D+I L++ +R
Sbjct: 173 IDEEHRFLRELGRFE---IEKLKIEDMEVEEFNYYITTLYQPRIFNDFIALRDASNYMIR 229
Query: 118 V-IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLAD 176
+ I + QS+ + F V+ ++ + + +TG + R +++ VG+ +
Sbjct: 230 LSISHAIAQSVKISLFEELVNETIDATKDTPQMIAETGRVNLKREEIMMAVGQLFILRIN 289
Query: 177 VILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQN 236
+ L+ + + E+ W + + IY R E+ QR L+ +++ + + L+E I +
Sbjct: 290 INLQGSVLDSPELMWTEPQLEPIYTAARSYLEINQRVALLNQRVEVIGDLLSMLKEQITH 349
Query: 237 RRSDLLEWCIIFLLTIENVISVYEIVRD 264
+ LEW ++ L+ + +I+++ IV D
Sbjct: 350 THDESLEWIVVILMGLLVLIALFSIVVD 377
>sp|Q05648|YD282_YEAST Uncharacterized protein YDR282C OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YDR282C PE=3 SV=1
Length = 414
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/260 (21%), Positives = 106/260 (40%), Gaps = 32/260 (12%)
Query: 28 PSEISALGVHGNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDY 87
P EI + N + M++ GS V + + V N + I + AS L + +D+
Sbjct: 137 PDEIVSFSYQDNGNKGDVMILGQNGSIVSWGFSESSVRNCIVPIVKAAS--LNPLNGEDF 194
Query: 88 AIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIG--SVLGQSMALDYFVSQVDCLVEEFA- 144
++ + +++G D+ L +LD I S L + + + ++++ A
Sbjct: 195 ETEDMDYV--EIEGEQDFDKLSSLDNKVTPRIACESFLSGDLIIINSLDSDQGMLDKAAF 252
Query: 145 --GINR---------AMEKTGTFTMDRTKLIQLVGKANSNLADVILKVG----------- 182
G++R AMEK + T T+ I K N +D + +G
Sbjct: 253 SSGLSRSTNLAVLEEAMEKHISKTRTITENISKGTKLNLRSSDALKSIGRLFLIRGKLNL 312
Query: 183 ---LFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRS 239
L E ++ W + + +I++ + ++ R L+ KL + L ++ R S
Sbjct: 313 YSELIETPDLYWSEPQLEEIFKNVSRYLDIGPRINILNSKLDYSTDECRALISLLNERNS 372
Query: 240 DLLEWCIIFLLTIENVISVY 259
LEW II+L+ E +Y
Sbjct: 373 TFLEWIIIYLIAFELCFEIY 392
>sp|P43620|RMD8_YEAST Sporulation protein RMD8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RMD8 PE=1 SV=1
Length = 662
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 20/237 (8%)
Query: 38 GNVSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIR--RHASGMLPEMRKDDYAIK----- 90
GN H + +FHYG V +N + + +N L I + + M+ + + D +
Sbjct: 420 GNDRHAE-IFIFHYGVIVFWNFTEIQEKNILGDITFADYKNLMIRPLDEQDIETEQFHFE 478
Query: 91 -----EKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAG 145
E+P + D+ + L++ D + + QS L F S++ ++
Sbjct: 479 YDRDTERPRIFNDI------VTLRSGDHIIELTLSHAIAQSSKLSRFESRISPILISVTK 532
Query: 146 INRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWR-DAKYAQIYEYLR 204
+ + + GT + R +L++ GK DV L + + E W + +Y +R
Sbjct: 533 LPKRLALYGTLGLKREQLLKKSGKLFKLRVDVNLSSTILDTPEFFWSFEPSLHPLYVAMR 592
Query: 205 EEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEI 261
E E+ QR L+ + K + + R + W I ++ + S+ EI
Sbjct: 593 EYLEIDQRVQVLNDRCKVFLEFFDICVDSVAERNMARVTWWFILVILFGVIFSLTEI 649
>sp|P29707|ATPB_PROMO ATP synthase subunit beta, sodium ion specific OS=Propionigenium
modestum GN=atpD PE=1 SV=2
Length = 467
Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 174 LADVILKVGLFERSEIAWRDAKYA-QIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQE 232
L D+I +G+ E S+ A +I + + + VA++F +D K V+ I +E
Sbjct: 373 LQDIIAILGMDELSDEDKVTVNRARKIERFFSQPFHVAEQFTGMDGKYVTVKETIRGFKE 432
Query: 233 VIQNRRSDLLEWCIIFLLTIENVIS 257
+I+ + DL E +++ TI+ I+
Sbjct: 433 IIEGKHDDLPEQAFLYVGTIDEAIA 457
>sp|Q8CI78|RMND1_MOUSE Required for meiotic nuclear division protein 1 homolog OS=Mus
musculus GN=Rmnd1 PE=2 SV=1
Length = 450
Score = 38.1 bits (87), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 39/213 (18%), Positives = 92/213 (43%), Gaps = 8/213 (3%)
Query: 48 VFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIV 107
+F G+AV +N+++ +++ + ++ RH + E+ + +E + + Q
Sbjct: 229 LFREGAAVFWNVKEKTMKHVMQVLERHETQPY-EVALVHWENEELNYIKTEGQSKLHRGE 287
Query: 108 LK---NLDTDSVRV----IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDR 160
+K LD D + + L S+ L + + +D +E I A++ +
Sbjct: 288 IKLNSELDLDDAILEKFAFSNALCLSVKLAIWEATLDKFIESIQSIPEALKAGKKVKLSH 347
Query: 161 TKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKL 220
+++Q +G+ + + L + W A ++Y+ + + +R ++ KL
Sbjct: 348 KEVMQKMGELFALRHRINLSSDFLITPDFYWDRANLEELYDKTCQFLSITRRVKVMNEKL 407
Query: 221 KFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIE 253
+ ++ + +R+ LEW I+ L+TIE
Sbjct: 408 QHCMELTDLMRNHLNEKRALRLEWMIVILITIE 440
>sp|B3QUP6|ATPB_CHLT3 ATP synthase subunit beta OS=Chloroherpeton thalassium (strain ATCC
35110 / GB-78) GN=atpD PE=3 SV=1
Length = 465
Score = 37.4 bits (85), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 1/99 (1%)
Query: 159 DRTKLIQLVGKANSNLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLD 217
D + ++ + + +L D+I +G+ E S E A+ ++ +L + + VA++F L+
Sbjct: 358 DTAQAVKQILQRYKDLQDIIAILGMDELSDEDKLLVARARKVQRFLSQPFFVAEQFTGLE 417
Query: 218 FKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
K +E I +E+I+ R L E + TIE+ I
Sbjct: 418 GKYVRLEDTIKAFKEIIEGRHDSLPENAFYLVGTIEDAI 456
>sp|B3EJK9|ATPB_CHLPB ATP synthase subunit beta OS=Chlorobium phaeobacteroides (strain
BS1) GN=atpD PE=3 SV=1
Length = 462
Score = 35.4 bits (80), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 173 NLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQ 231
+L D+I +G+ E S E ++ +I +L + + VA+ F L+ K +E I
Sbjct: 372 DLQDIIAILGMDELSDEDKLTVSRARKIQRFLSQPFFVAEAFTGLEGKYVKLEDTIKGFN 431
Query: 232 EVIQNRRSDLLEWCIIFLLTIENVI 256
E+I + DL E + TIE +
Sbjct: 432 EIIDGKHDDLPESAFYLVGTIEEAV 456
>sp|Q3A946|ATPB_CARHZ ATP synthase subunit beta OS=Carboxydothermus hydrogenoformans
(strain Z-2901 / DSM 6008) GN=atpD PE=3 SV=1
Length = 473
Score = 35.4 bits (80), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 164 IQLVGKANSNLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKF 222
+Q V + L D+I +G+ E S E A+ ++ +L + + VA+ F K
Sbjct: 370 VQRVLQRYKELQDIIAILGMDELSDEDKLIVARARKLQRFLSQPFTVAEAFTGRPGKYVP 429
Query: 223 VEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
V+ I +E+++ + D+ E C TI+ V+
Sbjct: 430 VKETIRGFKEILEGKHDDIPETCFYMAGTIDEVV 463
>sp|A6LJR1|ATPB_THEM4 ATP synthase subunit beta OS=Thermosipho melanesiensis (strain
BI429 / DSM 12029) GN=atpD PE=3 SV=1
Length = 469
Score = 35.0 bits (79), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 7/97 (7%)
Query: 164 IQLVGKANSNLADVILKVGLFERSE----IAWRDAKYAQIYEYLREEYEVAQRFGNLDFK 219
+Q V + +L D+I +G+ E SE I R K I +L + VA++F N+ K
Sbjct: 367 VQEVLQRYKDLQDIIAILGMEELSEEDKLIVQRARK---IERFLSQPVHVAEKFSNIPGK 423
Query: 220 LKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
+ I +E+++ + DL E + TI+ +
Sbjct: 424 YVPISETIRGFKEILEGKYDDLPEMAFYMVGTIDEAV 460
>sp|Q8KAC9|ATPB2_CHLTE ATP synthase subunit beta 2 OS=Chlorobium tepidum (strain ATCC
49652 / DSM 12025 / TLS) GN=atpD2 PE=3 SV=1
Length = 462
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 173 NLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQ 231
+L D+I +G+ E S E A+ ++ +L + + VA+ F L K +E I +
Sbjct: 372 DLQDIIAILGMDELSDEDKLVVARARKVQRFLSQPFFVAEAFTGLAGKYVKLEDTIKGFK 431
Query: 232 EVIQNRRSDLLEWCIIFLLTIENVIS 257
E+I R +L E + TIE ++
Sbjct: 432 EIIDGRHDNLPEAAFYLVGTIEEAVA 457
>sp|B7IG44|ATPB_THEAB ATP synthase subunit beta OS=Thermosipho africanus (strain TCF52B)
GN=atpD PE=3 SV=1
Length = 470
Score = 34.7 bits (78), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 173 NLADVILKVGLFERSE----IAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIH 228
+L D+I +G+ E SE I R K I +L + VA++F N+ K + I
Sbjct: 377 DLQDIIAILGMEELSEEDKLIVQRARK---IERFLSQPVHVAEKFSNIPGKYVPINETIR 433
Query: 229 FLQEVIQNRRSDLLEWCIIFLLTIENVI 256
+E+++ + DL E + TI+ +
Sbjct: 434 GFKEILEGKYDDLPEMAFYMVGTIDEAV 461
>sp|B5YJJ2|NADA_THEYD Quinolinate synthase A OS=Thermodesulfovibrio yellowstonii (strain
ATCC 51303 / DSM 11347 / YP87) GN=nadA PE=3 SV=1
Length = 303
Score = 34.7 bits (78), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 106 IVLKNLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQ 165
I+ N + V+ I +G S+ L ++VDC V F G++ E D+T L+
Sbjct: 20 ILAHNYQREEVQEIADFVGDSLELSRQATKVDCDVIVFCGVHFMAETAAILNPDKTVLLP 79
Query: 166 LVGKANSNLADVILKVGLFERSEIAWRDA-KYAQIYEYLREEYEV 209
+ A +AD + V +R W D YA I Y+ EV
Sbjct: 80 EID-AGCPMADTV-DVEELKR----WIDRYPYAPIVSYVNTTAEV 118
>sp|A5G9D8|ATPB_GEOUR ATP synthase subunit beta OS=Geobacter uraniireducens (strain Rf4)
GN=atpD PE=3 SV=1
Length = 470
Score = 34.3 bits (77), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 164 IQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNLDFK 219
+Q V + +L D+I +G+ E SE D A+ +I +L + + VA+ F K
Sbjct: 369 VQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQRFLSQPFHVAEAFTGAPGK 425
Query: 220 LKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
++ I QE++ + D+ E + TIE I
Sbjct: 426 YVELKDTIKGFQEIVAGKHDDVPEQAFYLVGTIEEAI 462
>sp|A4SC45|ATPB_PROVI ATP synthase subunit beta OS=Prosthecochloris vibrioformis (strain
DSM 265) GN=atpD PE=3 SV=1
Length = 462
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Query: 159 DRTKLIQLVGKANSNLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLD 217
D + ++++ + +L D+I +G+ E S E ++ ++ +L + + VA+ F L
Sbjct: 358 DTAQAVKMILQRYKDLQDIIAILGMDELSDEDKLVVSRARKVQRFLSQPFFVAEAFTGLS 417
Query: 218 FKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
K +E I +E+I + +L E + TIE I
Sbjct: 418 GKYVKLEETIKGFKEIIAGKHDNLPENAFYLVGTIEEAI 456
>sp|Q5RAR5|RMND1_PONAB Required for meiotic nuclear division protein 1 homolog OS=Pongo
abelii GN=RMND1 PE=2 SV=1
Length = 449
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 49 FHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAI---KEKPLLAEDMQGGPDY 105
F G+AV +N++D +++ + ++ +H E++ + A+ + + L ++G
Sbjct: 229 FREGAAVFWNVKDKTMKHVMKVLEKH------EIQPYEIALVHWENEELNYIKIEGQSKL 282
Query: 106 ----IVLKN-LDTDSVRV----IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTF 156
I L + LD D + + L S+ L + + +D +E I A++
Sbjct: 283 HRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKV 342
Query: 157 TMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNL 216
+ +++Q +G+ + + L + W +Y+ + + +R +
Sbjct: 343 KLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVM 402
Query: 217 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIE 253
+ KL+ ++ + +R+ LEW I+ L+TIE
Sbjct: 403 NEKLQHCMEPTDLMRNHLNEKRALRLEWMIVILITIE 439
>sp|Q3B6W8|ATPB1_PELLD ATP synthase subunit beta 1 OS=Pelodictyon luteolum (strain DSM
273) GN=atpD1 PE=3 SV=2
Length = 462
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 173 NLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQ 231
+L D+I +G+ E S E A+ ++ +L + + VA+ F L K +E +I +
Sbjct: 372 DLQDIIAILGMDELSDEDKLVVARARKVQRFLSQPFFVAEAFTGLAGKYVKLEDSIKGFK 431
Query: 232 EVIQNRRSDLLEWCIIFLLTIENVI 256
E+I + +L E + TIE I
Sbjct: 432 EIIAGKHDNLPEGAFYLVGTIEEAI 456
>sp|C6E9F1|ATPB_GEOSM ATP synthase subunit beta OS=Geobacter sp. (strain M21) GN=atpD
PE=3 SV=1
Length = 470
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 161 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 216
+ +Q V + +L D+I +G+ E SE D A+ +I ++L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQKFLSQPFHVAEAFTGS 422
Query: 217 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
K ++ I E+I + DL E + TIE I
Sbjct: 423 PGKYVELKDTIKGFSEIIAGKHDDLPEQAFYMVGTIEEAI 462
>sp|B5EFI7|ATPB_GEOBB ATP synthase subunit beta OS=Geobacter bemidjiensis (strain Bem /
ATCC BAA-1014 / DSM 16622) GN=atpD PE=3 SV=1
Length = 470
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 161 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 216
+ +Q V + +L D+I +G+ E SE D A+ +I ++L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQKFLSQPFHVAEAFTGS 422
Query: 217 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
K ++ I E+I + DL E + TIE I
Sbjct: 423 PGKYVELKDTIKGFSEIIAGKHDDLPEQAFYMVGTIEEAI 462
>sp|Q0BQE8|ATPB_GRABC ATP synthase subunit beta OS=Granulibacter bethesdensis (strain
ATCC BAA-1260 / CGDNIH1) GN=atpD PE=3 SV=1
Length = 476
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 164 IQLVGKANSNLADVILKVGLFERSE-IAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKF 222
+Q + + +L D+I +G+ E SE A+ +I ++ + + VA+ F
Sbjct: 373 VQRILQTYKSLQDIIAILGMDELSEEDKLTVARARKIERFMSQPFHVAEVFTGSPGVFVS 432
Query: 223 VEHNIHFLQEVIQNRRSDLLEWCIIFLLTIEN 254
+E + +E+++ + DL E + + TIE+
Sbjct: 433 IEDTVRSFKEIVEGKHDDLPEAAFLMVGTIED 464
>sp|Q02BU1|ATPB_SOLUE ATP synthase subunit beta OS=Solibacter usitatus (strain Ellin6076)
GN=atpD PE=3 SV=1
Length = 482
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 173 NLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVE--HNIHF 229
+L D+I +G+ E S E A+ ++ ++L + + VA++F FK K+V+ +I
Sbjct: 389 DLQDIIAILGIDELSDEDKLTVARARKVQKFLSQPFHVAEQF--TGFKGKYVKLADSIKG 446
Query: 230 LQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDS 265
+E+++ + + E TIE+V+ E ++ +
Sbjct: 447 FREIVEGKHDGVPEQAFYMQGTIEDVLEKAEAMKKA 482
>sp|O84096|TRUB_CHLTR tRNA pseudouridine synthase B OS=Chlamydia trachomatis (strain
D/UW-3/Cx) GN=truB PE=3 SV=1
Length = 241
Score = 33.1 bits (74), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 33/170 (19%)
Query: 91 EKPLLAEDMQGGPDYIVLKNLDTDSVRVIG-SVLGQSMALDYFVSQVDCLV--------- 140
E LL + QG + ++++L VR+IG +G + LD F + V ++
Sbjct: 9 EGVLLVDKPQGRTSFSLIRSL----VRLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLS 64
Query: 141 -------EEFAGINRAMEKTGTFTMDRTKLIQLVGKANS-NLADVILKVGLFERSEI--- 189
+E+A + T T+ D ++VG++ D +L + + EI
Sbjct: 65 DIMLFEDKEYAAVAHLGTTTDTYDCDG----KIVGRSKKVPTMDEVLTCTSYFQGEIQQV 120
Query: 190 ----AWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQ 235
+ + + ++YEY R+ + +RF + L+ V++ L V+Q
Sbjct: 121 PPMFSAKKVQGKKLYEYARQGLSIERRFATVTVNLRLVKYEYPRLHFVVQ 170
>sp|B0BB81|TRUB_CHLTB tRNA pseudouridine synthase B OS=Chlamydia trachomatis serovar L2b
(strain UCH-1/proctitis) GN=truB PE=3 SV=1
Length = 241
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 33/170 (19%)
Query: 91 EKPLLAEDMQGGPDYIVLKNLDTDSVRVIG-SVLGQSMALDYFVSQVDCLV--------- 140
E LL + QG + ++++L VR+IG +G + LD F + V ++
Sbjct: 9 EGVLLVDKPQGRTSFSLIRSL----VRLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLS 64
Query: 141 -------EEFAGINRAMEKTGTFTMDRTKLIQLVGKANS-NLADVILKVGLFERSEI--- 189
+E+A + T T+ D ++VG++ D +L + + EI
Sbjct: 65 DIMLFEDKEYAAVAHLGTTTDTYDCDG----KIVGRSKKVPTMDEVLTCTSYFQGEIQQV 120
Query: 190 ----AWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQ 235
+ + + ++YEY R+ + +RF + L+ V++ L V+Q
Sbjct: 121 PPMFSAKKVQGKKLYEYARQGLSIERRFATVTVNLRLVKYEYPRLHFVVQ 170
>sp|B0B9K2|TRUB_CHLT2 tRNA pseudouridine synthase B OS=Chlamydia trachomatis serovar L2
(strain 434/Bu / ATCC VR-902B) GN=truB PE=3 SV=1
Length = 241
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 73/170 (42%), Gaps = 33/170 (19%)
Query: 91 EKPLLAEDMQGGPDYIVLKNLDTDSVRVIG-SVLGQSMALDYFVSQVDCLV--------- 140
E LL + QG + ++++L VR+IG +G + LD F + V ++
Sbjct: 9 EGVLLVDKPQGRTSFSLIRSL----VRLIGVKKIGHAGTLDPFATGVMVMLIGRKFTRLS 64
Query: 141 -------EEFAGINRAMEKTGTFTMDRTKLIQLVGKANS-NLADVILKVGLFERSEI--- 189
+E+A + T T+ D ++VG++ D +L + + EI
Sbjct: 65 DIMLFEDKEYAAVAHLGTTTDTYDCDG----KIVGRSKKVPTMDEVLTCTSYFQGEIQQV 120
Query: 190 ----AWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQ 235
+ + + ++YEY R+ + +RF + L+ V++ L V+Q
Sbjct: 121 PPMFSAKKVQGKKLYEYARQGLSIERRFATVTVNLRLVKYEYPRLHFVVQ 170
>sp|P35110|ATPB_CHLLI ATP synthase subunit beta OS=Chlorobium limicola GN=atpD PE=3 SV=1
Length = 462
Score = 33.1 bits (74), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 1/100 (1%)
Query: 159 DRTKLIQLVGKANSNLADVILKVGLFERSEI-AWRDAKYAQIYEYLREEYEVAQRFGNLD 217
D + ++ + + +L D+I +G+ E S+ A+ ++ +L + + VA+ F L
Sbjct: 358 DTAQAVKQILQRYKDLQDIIAILGMDELSDDDKLVVARARKVQRFLSQPFFVAEAFTGLA 417
Query: 218 FKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVIS 257
K +E I +E+I R +L E + TIE ++
Sbjct: 418 GKYVKLEDTIKGFKEIIAGRHDNLPEAAFYLVGTIEEAVA 457
>sp|Q9NWS8|RMND1_HUMAN Required for meiotic nuclear division protein 1 homolog OS=Homo
sapiens GN=RMND1 PE=1 SV=2
Length = 449
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/217 (18%), Positives = 93/217 (42%), Gaps = 18/217 (8%)
Query: 49 FHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAI---KEKPLLAEDMQGGPDY 105
F G+AV +N++D +++ + ++ +H E++ + A+ + + L ++G
Sbjct: 229 FREGAAVFWNVKDKTMKHVMKVLEKH------EIQPYEIALVHWENEELNYIKIEGQSKL 282
Query: 106 ----IVLKN-LDTDSVRV----IGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTF 156
I L + LD D + + L S+ L + + +D +E I A++
Sbjct: 283 HRGEIKLNSELDLDDAILEKFAFSNALCLSVKLAIWEASLDKFIESIQSIPEALKAGKKV 342
Query: 157 TMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNL 216
+ +++Q +G+ + + L + W +Y+ + + +R +
Sbjct: 343 KLSHEEVMQKIGELFALRHRINLSSDFLITPDFYWDRENLEGLYDKTCQFLSIGRRVKVM 402
Query: 217 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIE 253
+ KL+ ++ + +R+ LEW I+ L+TIE
Sbjct: 403 NEKLQHCMELTDLMRNHLNEKRALRLEWMIVILITIE 439
>sp|Q39Q56|ATPB_GEOMG ATP synthase subunit beta OS=Geobacter metallireducens (strain
GS-15 / ATCC 53774 / DSM 7210) GN=atpD PE=3 SV=1
Length = 470
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 161 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 216
+ +Q V + +L D+I +G+ E SE D A+ +I +L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQRFLSQPFHVAEAFTGS 422
Query: 217 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
K ++ I QE++ + D+ E + TIE +
Sbjct: 423 PGKYVELKDTIKGFQEIVAGKHDDIPEQAFYMVGTIEEAL 462
>sp|B4SAN6|ATPB_PELPB ATP synthase subunit beta OS=Pelodictyon phaeoclathratiforme
(strain DSM 5477 / BU-1) GN=atpD PE=3 SV=1
Length = 462
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 173 NLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQ 231
+L D+I +G+ E S E ++ ++ +L + + VA+ F L K +E I +
Sbjct: 372 DLQDIIAILGMDELSDEDKLVVSRARKVQRFLSQPFFVAEAFTGLAGKYVKLEETIKGFK 431
Query: 232 EVIQNRRSDLLEWCIIFLLTIENVI 256
E+I R +L E + TIE +
Sbjct: 432 EIIAGRHDNLPESAFYLVGTIEEAV 456
>sp|Q74GY0|ATPB_GEOSL ATP synthase subunit beta OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=atpD PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 164 IQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNLDFK 219
+Q V + +L D+I +G+ E SE D A+ +I +L + + VA+ F K
Sbjct: 369 VQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQRFLSQPFHVAEAFTGSPGK 425
Query: 220 LKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
++ I QE++ + D+ E + TIE +
Sbjct: 426 YVELKDTIKGFQEIVAGKHDDVPEQAFYMVGTIEEAL 462
>sp|Q74H71|NADA_GEOSL Quinolinate synthase A OS=Geobacter sulfurreducens (strain ATCC
51573 / DSM 12127 / PCA) GN=nadA PE=3 SV=1
Length = 304
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 114 DSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSN 173
D V+ I + G S+AL ++ D V F G++ E + D+T L+ + A
Sbjct: 29 DEVQEIADITGDSLALSQEAARTDADVIVFCGVHFMAESASILSPDKTVLLPRMD-AGCP 87
Query: 174 LADVILKVGLFE 185
+AD++ L E
Sbjct: 88 MADMVTAEALLE 99
>sp|Q939J8|PSEI_CAMJJ Pseudaminic acid synthase OS=Campylobacter jejuni subsp. jejuni
serotype O:23/36 (strain 81-176) GN=pseI PE=3 SV=1
Length = 343
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 171 NSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFL 230
NS+ D I+K GL+++ ++ YE+ + +E AQ G L F F + +I FL
Sbjct: 57 NSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGILCFSSPFAKEDIEFL 116
Query: 231 QEVIQNRRSDLLEWCII-FLLTIENVISVYEIVRDSTGVSLDLAC 274
+R D + + I F EN + + + T VS +A
Sbjct: 117 ------KRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIAT 155
>sp|B9LZ84|ATPB_GEOSF ATP synthase subunit beta OS=Geobacter sp. (strain FRC-32) GN=atpD
PE=3 SV=1
Length = 470
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 161 TKLIQLVGKANSNLADVILKVGLFERSEIAWRD----AKYAQIYEYLREEYEVAQRFGNL 216
+ +Q V + +L D+I +G+ E SE D A+ +I +L + + VA+ F
Sbjct: 366 ARQVQYVLQKYKDLQDIIAILGMDELSE---EDKLVVARARKIQRFLSQPFHVAEAFTGS 422
Query: 217 DFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
K ++ I +E++ + D+ E + TIE I
Sbjct: 423 PGKYVELKDTIKGFKEIVDGKHDDIPEQAFYMVGTIEEAI 462
>sp|Q8VE33|GD1L1_MOUSE Ganglioside-induced differentiation-associated protein 1-like 1
OS=Mus musculus GN=Gdap1l1 PE=2 SV=1
Length = 370
Score = 32.3 bits (72), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 78/174 (44%), Gaps = 33/174 (18%)
Query: 71 IRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSVLGQ-SMAL 129
IRRH + ++ K D+ +E+P L+E ++ K L+ D V + +LG+ +M L
Sbjct: 184 IRRHLANATTDLMKLDH--EEEPQLSEPYLSKQKKLMAKILEHDDVSYLKKILGELAMVL 241
Query: 130 DYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVIL-----KVGLF 184
D Q++ +E+ R +E G +T + L G A + LADV+L ++
Sbjct: 242 D----QIEAELEK-----RKLENEG-----QTCELWLCGCAFT-LADVLLGATLHRLKFL 286
Query: 185 ERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIH--FLQEVIQN 236
S+ W D + + +E QR F + V +IH L VI N
Sbjct: 287 GLSKKYWEDGSRPNLQSF----FERVQR----RFAFRKVLGDIHTTLLSAVIPN 332
>sp|Q0P8U0|PSEI_CAMJE Pseudaminic acid synthase OS=Campylobacter jejuni subsp. jejuni
serotype O:2 (strain NCTC 11168) GN=pseI PE=1 SV=1
Length = 343
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 7/105 (6%)
Query: 171 NSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFL 230
NS+ D I+K GL+++ ++ YE+ + +E AQ G L F F + ++ FL
Sbjct: 57 NSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGILCFSSPFAKEDVEFL 116
Query: 231 QEVIQNRRSDLLEWCII-FLLTIENVISVYEIVRDSTGVSLDLAC 274
+R D + + I F EN + + + T VS +A
Sbjct: 117 ------KRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIAT 155
>sp|B1I6J7|ATPB_DESAP ATP synthase subunit beta OS=Desulforudis audaxviator (strain
MP104C) GN=atpD PE=3 SV=1
Length = 472
Score = 31.6 bits (70), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 7/97 (7%)
Query: 164 IQLVGKANSNLADVILKVGLFERSE----IAWRDAKYAQIYEYLREEYEVAQRFGNLDFK 219
+Q V + L D+I +G+ E SE I R K + YL + + VA+ F +
Sbjct: 369 VQKVLQRYKELQDIIAILGMEELSEEDKLIVARARK---LQRYLSQPFHVAEAFTGTPGR 425
Query: 220 LKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
++ NI QE++ + L E + TIE +
Sbjct: 426 YVSLKDNIRGFQEILDGKHDGLPEDAFYMVGTIEEAV 462
>sp|P42465|ATPB_CHLP8 ATP synthase subunit beta OS=Chlorobaculum parvum (strain NCIB
8327) GN=atpD PE=3 SV=1
Length = 462
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
Query: 159 DRTKLIQLVGKANSNLADVILKVGLFERS-EIAWRDAKYAQIYEYLREEYEVAQRFGNLD 217
D + ++ + + +L D+I +G+ E S E A+ ++ +L + + VA+ F L
Sbjct: 358 DTAQAVKQILQRYKDLQDIIAILGMDELSDEDKLVVARARKVQRFLSQPFFVAEAFTGLA 417
Query: 218 FKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVI 256
K +E I +E+I + L E + TIE +
Sbjct: 418 GKYVKLEDTIKGFKEIIAGKHDSLPENAFYLVGTIEEAV 456
>sp|P23172|RDRP_SCVLB Probable RNA-directed RNA polymerase OS=Saccharomyces cerevisiae
virus L-BC GN=gag-pol PE=2 SV=2
Length = 1512
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%)
Query: 148 RAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEY 207
RA + GT D +KL +L N +V + RS+I + YA++ E+ RE +
Sbjct: 935 RAKQAQGTVKYDMSKLFELNVLENGVDEEVDWEKEKRNRSDIKTVNISYAKVLEHCRELF 994
Query: 208 EVAQRFGNLDFKLKFVEH 225
+A+ G ++K+ E+
Sbjct: 995 IMARAEGKRPMRMKWQEY 1012
>sp|B8I579|ATPB_CLOCE ATP synthase subunit beta OS=Clostridium cellulolyticum (strain
ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=atpD PE=3
SV=1
Length = 465
Score = 31.2 bits (69), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 164 IQLVGKANSNLADVILKVGLFERSE----IAWRDAKYAQIYEYLREEYEVAQRFGNLDFK 219
+Q + + N L D+I +G+ E E +R K I YL + + V ++F K
Sbjct: 364 VQEILQRNKELQDIIAILGMDELPEEDKLTVFRARK---IQRYLSQPFFVGEQFTGYKGK 420
Query: 220 LKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTG 267
++ I +E+I + ++ E TIE VYE ++ G
Sbjct: 421 YVPIKETIRGFKEIIDGKMDNISEAAFYMKGTIEE---VYEAAKEMEG 465
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,724,803
Number of Sequences: 539616
Number of extensions: 4185580
Number of successful extensions: 10274
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 10258
Number of HSP's gapped (non-prelim): 51
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)