Query 023669
Match_columns 279
No_of_seqs 126 out of 481
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:45:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023669.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023669hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1723 Uncharacterized conser 100.0 2.8E-60 6E-65 435.5 20.8 226 40-265 102-327 (331)
2 KOG2861 Uncharacterized conser 100.0 7.2E-59 1.6E-63 441.5 24.0 263 2-266 124-395 (399)
3 PF02582 DUF155: Uncharacteris 100.0 3.3E-47 7.1E-52 329.1 20.1 173 45-218 1-175 (175)
4 PRK11085 magnesium/nickel/coba 82.3 28 0.0006 33.1 12.3 159 105-271 101-281 (316)
5 TIGR00383 corA magnesium Mg(2+ 76.0 66 0.0014 29.7 13.2 47 191-237 209-256 (318)
6 PRK09546 zntB zinc transporter 68.1 1.1E+02 0.0023 28.7 15.5 68 160-230 181-255 (324)
7 PF01544 CorA: CorA-like Mg2+ 58.5 86 0.0019 28.0 9.4 54 189-242 183-237 (292)
8 PHA02844 putative transmembran 49.6 77 0.0017 23.9 6.0 40 221-260 18-65 (75)
9 PF06200 tify: tify domain; I 48.9 41 0.00088 21.8 4.0 29 43-71 5-34 (36)
10 COG0598 CorA Mg2+ and Co2+ tra 48.1 2.4E+02 0.0052 26.5 12.7 141 124-272 137-288 (322)
11 PHA02650 hypothetical protein; 42.6 1.1E+02 0.0024 23.3 6.1 16 222-237 19-34 (81)
12 TIGR00383 corA magnesium Mg(2+ 42.6 2.8E+02 0.006 25.6 10.5 67 208-274 220-286 (318)
13 PRK04598 tatA twin arginine tr 42.4 29 0.00062 26.6 2.9 27 242-269 7-36 (81)
14 PRK00191 tatA twin arginine tr 41.4 24 0.00053 27.2 2.4 30 241-271 5-37 (84)
15 PF15136 UPF0449: Uncharacteri 41.3 97 0.0021 24.6 5.8 41 194-234 50-90 (97)
16 COG0598 CorA Mg2+ and Co2+ tra 39.2 2.3E+02 0.0051 26.6 9.3 73 195-268 228-322 (322)
17 PF07303 Occludin_ELL: Occludi 37.3 1.4E+02 0.0031 23.5 6.4 39 191-229 53-98 (101)
18 PF07889 DUF1664: Protein of u 36.0 1E+02 0.0022 25.5 5.5 46 195-240 51-97 (126)
19 PRK01833 tatA twin arginine tr 35.6 43 0.00093 25.2 2.9 27 242-269 7-36 (74)
20 PRK03554 tatA twin arginine tr 35.4 42 0.00092 26.2 2.9 27 242-269 7-36 (89)
21 PF04102 SlyX: SlyX; InterPro 35.2 74 0.0016 23.2 4.1 29 209-237 2-30 (69)
22 PHA02975 hypothetical protein; 34.2 1.9E+02 0.0042 21.4 6.1 40 222-261 19-62 (69)
23 PRK14860 tatA twin arginine tr 34.0 33 0.00071 25.1 2.0 28 242-270 7-37 (64)
24 PHA02819 hypothetical protein; 33.8 1.1E+02 0.0024 22.8 4.8 21 240-260 43-63 (71)
25 KOG1690 emp24/gp25L/p24 family 33.8 2.3E+02 0.005 25.5 7.6 71 197-268 131-209 (215)
26 PRK14857 tatA twin arginine tr 33.7 34 0.00074 26.7 2.2 27 242-269 9-38 (90)
27 PF02416 MttA_Hcf106: mttA/Hcf 33.5 49 0.0011 23.0 2.8 27 242-269 4-33 (53)
28 PRK01614 tatE twin arginine tr 33.4 49 0.0011 25.6 2.9 27 242-269 7-36 (85)
29 PRK00736 hypothetical protein; 33.3 87 0.0019 22.9 4.2 31 208-238 2-32 (68)
30 PF00352 TBP: Transcription fa 32.2 93 0.002 23.4 4.4 30 43-72 49-79 (86)
31 PRK02119 hypothetical protein; 31.6 83 0.0018 23.4 3.9 31 208-238 6-36 (73)
32 PRK02793 phi X174 lysis protei 30.0 98 0.0021 22.9 4.1 31 208-238 5-35 (72)
33 PRK14861 tatA twin arginine tr 30.0 45 0.00097 24.1 2.2 27 242-269 8-37 (61)
34 PF04678 DUF607: Protein of un 29.7 2.4E+02 0.0052 24.4 7.1 53 209-262 62-114 (180)
35 PRK04406 hypothetical protein; 29.4 93 0.002 23.3 3.9 31 208-238 8-38 (75)
36 PRK00295 hypothetical protein; 29.0 1.1E+02 0.0025 22.3 4.2 31 208-238 2-32 (68)
37 PHA03054 IMV membrane protein; 28.8 2.2E+02 0.0049 21.3 5.6 56 197-260 2-65 (72)
38 PF12998 ING: Inhibitor of gro 27.9 2.7E+02 0.0058 21.1 6.5 24 213-236 74-97 (105)
39 PRK04325 hypothetical protein; 27.5 1.1E+02 0.0024 22.8 3.9 30 209-238 7-36 (74)
40 PRK14858 tatA twin arginine tr 27.3 47 0.001 26.8 2.0 29 241-270 6-37 (108)
41 PF13540 RCC1_2: Regulator of 25.8 89 0.0019 18.8 2.7 21 41-61 7-27 (30)
42 PRK06746 peptide chain release 25.0 1.3E+02 0.0029 28.8 5.0 45 186-231 3-48 (326)
43 KOG2870 NADH:ubiquinone oxidor 24.7 2.9E+02 0.0063 26.9 7.1 81 118-204 117-204 (452)
44 PF09418 DUF2009: Protein of u 23.4 1.7E+02 0.0036 29.4 5.5 87 128-218 9-100 (458)
45 COG1029 FwdB Formylmethanofura 23.4 1.1E+02 0.0024 30.0 4.1 62 52-113 142-205 (429)
46 PF04340 DUF484: Protein of un 23.1 1.1E+02 0.0024 27.1 4.0 81 182-262 14-100 (225)
47 PRK10963 hypothetical protein; 22.6 1.4E+02 0.0031 26.6 4.5 74 182-262 11-97 (223)
48 PRK05589 peptide chain release 22.6 1.7E+02 0.0038 28.0 5.3 46 186-232 3-49 (325)
49 PRK00846 hypothetical protein; 22.1 1.7E+02 0.0036 22.2 4.1 31 207-237 9-39 (77)
50 PRK14762 membrane protein; Pro 21.5 1E+02 0.0023 18.5 2.2 17 246-262 10-26 (27)
51 PF13758 Prefoldin_3: Prefoldi 21.2 1.5E+02 0.0033 23.6 3.8 24 213-236 70-93 (99)
52 COG2178 Predicted RNA-binding 20.1 4.1E+02 0.0089 23.9 6.7 70 162-236 116-187 (204)
No 1
>COG1723 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.8e-60 Score=435.52 Aligned_cols=226 Identities=22% Similarity=0.369 Sum_probs=211.4
Q ss_pred ccceeEEEEEecCcEEEEeCChHHHHHHHHHHHHhhcCCCCcCcccceEEEecCCcccccccCCCEEEecCCCchhHHHH
Q 023669 40 VSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMRKDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVI 119 (279)
Q Consensus 40 ~~~~~~vfiF~yGvVVfwn~~~~e~~~~L~~l~~~~~~~~~~~~~ee~~~~~~~~~~~~~~i~~D~I~L~~~d~~~~~ai 119 (279)
.++.+++|+|.||||||||+++.|+..+|..+.+++.+|+.+++.|..+|...-...++..|.||.|+|.+.+...+++|
T Consensus 102 ~~~~~~~f~f~yGvVV~Wg~se~eE~~iL~~i~~~~~~~L~e~e~E~e~fhy~~~~~~~prI~nD~I~L~s~~~~~klai 181 (331)
T COG1723 102 DEEFGEAFFFPYGVVVFWGFSESEEKNILRDITKAESNPLKEPEIETEEFHYNVTETEKPRIFNDKIILRSSNVFTKLAI 181 (331)
T ss_pred CcccceEEEecCceEEEeCCcHHHHhhHHHhhhhcccCCCCCccceEEEEEeeeecccCceeECCEEEEcCCchhHHHHH
Confidence 45789999999999999999999999999999999999998766555544432111345578899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhHhhccccccchhhhccchhHHH
Q 023669 120 GSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQI 199 (279)
Q Consensus 120 S~aLAQSvkL~~~E~~l~~~i~~~~~i~~~L~~~G~~~~~rk~l~k~iG~l~~~r~~inl~~~lLD~Pe~~We~~~le~l 199 (279)
||||||||||++||+.++.+|++++++|+.|+++|+++++|++++|++|++|..|.++|+++++||+||+||++|.++.+
T Consensus 182 S~aLAQSVkLs~fE~~v~~ti~~t~~~pq~la~~gkvslsr~eilk~iG~LFllR~~iNL~s~IlDtPef~W~ePqlepl 261 (331)
T COG1723 182 SHALAQSVKLSVFEESVDNTIDQTKPIPQELARTGKVSLSRKEILKQIGKLFLLRVSINLHSDILDTPEFFWSEPQLEPL 261 (331)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcchhHHHHhhcCCccccHHHHHHHHhHHhheeeeeeeeeccccCchhcccCcchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHh
Q 023669 200 YEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDS 265 (279)
Q Consensus 200 Y~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s~rLEwiIIiLI~vEI~l~l~~~~~~~ 265 (279)
|.++++|+||++|+++||+||+++.|++++|.+.++++||++|||||||||++||++++++++.+.
T Consensus 262 Y~~~~~yLdI~~RvnvLN~Rl~vi~d~l~il~e~ln~~~s~~lEWivIiLI~~eVllsl~~i~~~~ 327 (331)
T COG1723 262 YLAVREYLDINPRVNVLNRRLEVISDLLDILNEQLNHSHSTRLEWIVIILIGLEVLLSLYNIIVKY 327 (331)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhhcccceeEEEehhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765
No 2
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.2e-59 Score=441.46 Aligned_cols=263 Identities=29% Similarity=0.433 Sum_probs=221.7
Q ss_pred CccCCCCccCCCCCcchhhhhhcCCCCCCcccCCccc-c-ccceeEEEEEecCcEEEEeCChHHHHHHHHHHHHhhcCCC
Q 023669 2 QAENLTHVVPPSSRSTKYIALRYSDFPSEISALGVHG-N-VSHCRYMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGML 79 (279)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~vfiF~yGvVVfwn~~~~e~~~~L~~l~~~~~~~~ 79 (279)
+++.-+-.|||-+++++|....+.+......-+.... + -++++++|+|+||||||||+++.|++.+|..+++|+.+|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~~~~eifvF~yGvvVfwn~s~~q~~~iL~~le~~e~~~~ 203 (399)
T KOG2861|consen 124 LAEFNECLYEPTSFNTNYVGLDFSDKSDSSIKPLNGSINGSGEFSEIFVFRYGVVVFWNVSENQEKHILKELERHEYGPL 203 (399)
T ss_pred hhhhhhcccCccccccccccccccCccccccccccccccCCCCcceEEEEecceEEEEecChhHHHhHHHHHHHhccccc
Confidence 4556677899999999888855555443322211111 2 3378999999999999999999999999999999999854
Q ss_pred Cc------CcccceEEEecCCcccccccCCCEEEec-CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 023669 80 PE------MRKDDYAIKEKPLLAEDMQGGPDYIVLK-NLDTDSVRVIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEK 152 (279)
Q Consensus 80 ~~------~~~ee~~~~~~~~~~~~~~i~~D~I~L~-~~d~~~~~aiS~aLAQSvkL~~~E~~l~~~i~~~~~i~~~L~~ 152 (279)
.. .+.++|.+.+.... .....+|.|.+. +.+...+.|||+||||||||++||+++|++|++++.+|+.|++
T Consensus 204 ~~~l~~~e~ev~~~~~~~t~~~--~~~~~~~~i~l~~~~~~l~k~aiS~alaQSvKL~~~E~~vd~~I~s~~~ipe~la~ 281 (399)
T KOG2861|consen 204 EIALDEEESEVEEFTYLITGST--FRRGINDDIVLDDSDNILIKLAISHALAQSVKLSYFESLVDKTIESTTDIPESLAL 281 (399)
T ss_pred hhhhchhhhhhhcccccccccc--ccccccceeEEecccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh
Confidence 31 22333333333221 112234555554 5557788899999999999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHHHHHHHhHhhccccccchhhhccchhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 023669 153 TGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQE 232 (279)
Q Consensus 153 ~G~~~~~rk~l~k~iG~l~~~r~~inl~~~lLD~Pe~~We~~~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~ 232 (279)
+|+++++|++++|++|++|.+|+++||++++||+|||+|++|+|+++|+.+++||||++|+++||+||++|.|++++|.+
T Consensus 282 ~gkl~lsr~e~lk~iGkLf~LR~~INL~s~lLdtPdf~W~ep~Le~iY~~~r~yleI~qRv~vLN~kl~~i~~~~~~l~e 361 (399)
T KOG2861|consen 282 GGKLTLSREELLKKIGKLFALRHDINLSSGLLDTPDFYWDEPQLEPIYEATRRYLEIGQRVNVLNYKLKVIEDLLDILQE 361 (399)
T ss_pred cCeecccHHHHHHHHHHHHHHheeeecccccccCcccccCchhHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 023669 233 VIQNRRSDLLEWCIIFLLTIENVISVYEIVRDST 266 (279)
Q Consensus 233 ~l~~~~s~rLEwiIIiLI~vEI~l~l~~~~~~~~ 266 (279)
.++++|+.+||||||+||++||++++++++.+.-
T Consensus 362 ~ln~r~~~~LEWiIIiLI~~eV~i~i~~i~~~~~ 395 (399)
T KOG2861|consen 362 NLNERHSERLEWIIIILIAFEVAIEIYQIVVRYL 395 (399)
T ss_pred HhhhccccceehhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987653
No 3
>PF02582 DUF155: Uncharacterised ACR, YagE family COG1723; InterPro: IPR003734 This entry describes proteins of unknown function.
Probab=100.00 E-value=3.3e-47 Score=329.08 Aligned_cols=173 Identities=28% Similarity=0.465 Sum_probs=165.9
Q ss_pred EEEEEecCcEEEEeCChHHHHHHHHHHHHhhcCCCCcCc--ccceEEEecCCcccccccCCCEEEecCCCchhHHHHHHH
Q 023669 45 YMVVFHYGSAVLFNIEDHEVENYLHIIRRHASGMLPEMR--KDDYAIKEKPLLAEDMQGGPDYIVLKNLDTDSVRVIGSV 122 (279)
Q Consensus 45 ~vfiF~yGvVVfwn~~~~e~~~~L~~l~~~~~~~~~~~~--~ee~~~~~~~~~~~~~~i~~D~I~L~~~d~~~~~aiS~a 122 (279)
+||+|+||||||||++++++..+|+.+++++.+|+++.. .|+|.+..+++. ....+.+|.|+|++.+...++|+|+|
T Consensus 1 dvf~F~~G~vVfw~~~~~~~~~~l~~l~~~~~~~~~~~~~~~e~~~~~~~~~~-~~~~i~~d~i~l~~~~~~~~~aiS~~ 79 (175)
T PF02582_consen 1 DVFLFRYGVVVFWGVSEEEEKQFLDYLKPFEEEPLSEPEVETEEMNYIYDPNL-PKSRIQNDIIVLPELDVLEKLAISHA 79 (175)
T ss_pred CEEEecCcEEEEEeCCHHHHHHHHHHHHHHHhCCCccccceeEEEEEEEeCCC-CCceEECCEEEEcccchHHHHHHHHH
Confidence 589999999999999999999999999999999998765 999999998864 24568999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhHhhccccccchhhhccchhHHHHHH
Q 023669 123 LGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEY 202 (279)
Q Consensus 123 LAQSvkL~~~E~~l~~~i~~~~~i~~~L~~~G~~~~~rk~l~k~iG~l~~~r~~inl~~~lLD~Pe~~We~~~le~lY~~ 202 (279)
|||||+|++||+.+++++++++++|+.|+++|+++++||+++|++|+++..|+++|++.++||+||+||++|+|+++|++
T Consensus 80 LAqSv~L~~~E~~v~~~l~~~~~i~~~L~~~G~~~~~~k~l~k~~G~l~~~r~~i~l~~~ilD~Pe~~We~~~le~ly~~ 159 (175)
T PF02582_consen 80 LAQSVKLDFFEEQVDKLLEETEPIPEELAKTGKLPLSRKELLKLIGELFSLRHDINLNSDILDTPEFFWENPELEPLYER 159 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHhhhcccCchhccCChhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhhHHHHHHH
Q 023669 203 LREEYEVAQRFGNLDF 218 (279)
Q Consensus 203 l~~~~ei~~R~~~Ln~ 218 (279)
+++||||++|+++||+
T Consensus 160 l~~~lei~~R~~~Ln~ 175 (175)
T PF02582_consen 160 LRRYLEIKERIRILNE 175 (175)
T ss_pred HHHHcCHHHHHHHhcC
Confidence 9999999999999985
No 4
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=82.25 E-value=28 Score=33.12 Aligned_cols=159 Identities=16% Similarity=0.186 Sum_probs=84.6
Q ss_pred EEEecCCCchhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCcc------HHHHHHHHHH
Q 023669 105 YIVLKNLDTDSVRVIGSVL---------GQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMD------RTKLIQLVGK 169 (279)
Q Consensus 105 ~I~L~~~d~~~~~aiS~aL---------AQSvkL~~~E~~l~~~i~~~~~i~~~L~~~G~~~~~------rk~l~k~iG~ 169 (279)
.|++...++.....+...+ ++.+-+..+|..++...+.++.+-.++.+-++--+. =+++++.+|+
T Consensus 101 LvTvr~~~~~~f~~~~~r~~~~~~~~~~~~~vl~~Lld~iVd~~ad~lE~~~~~ld~ls~~if~~~~~~~~~~~l~~i~~ 180 (316)
T PRK11085 101 LFTLRERELPAFRLYRMRARSQTLVDGNAYELLLDLFETKIEQLADEIENIYSDLEKLSRVIMEGHQGDEYDEALSTLAE 180 (316)
T ss_pred EEEEecCCcchHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHH
Confidence 4556666654444333222 356888889999998888877777776654432221 1466677766
Q ss_pred H----HHHHHHhHhhcccc---ccchhhhccchhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 023669 170 A----NSNLADVILKVGLF---ERSEIAWRDAKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLL 242 (279)
Q Consensus 170 l----~~~r~~inl~~~lL---D~Pe~~We~~~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s~rL 242 (279)
+ ...|..+....+++ -++..+ .....+.+..-.++.-++.++.+.+..|++.+.|.+.-+.+.-+++-...|
T Consensus 181 l~~~~~~~r~~l~~~~r~l~~l~~~~~~-~~~~~~~~~~~~~Di~~l~~~~~~~~~~~~~l~d~~~~~i~~~~N~~mk~l 259 (316)
T PRK11085 181 LEDIGWKVRLCLMDTQRALNFLVRKARL-PGGQLEQAREILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIF 259 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4 22333332111111 122111 222234455555666666777777777777766666655555444443333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 023669 243 EWCIIFLLTIENVISVYEIVRDSTGVSLD 271 (279)
Q Consensus 243 EwiIIiLI~vEI~l~l~~~~~~~~~~~~~ 271 (279)
=++-+++...-++...+|.-++
T Consensus 260 -------Tv~s~if~pptliagiyGMNf~ 281 (316)
T PRK11085 260 -------SVVSVVFLPPTLVASSYGMNFE 281 (316)
T ss_pred -------HHHHHHHHHHHHHHhhcccccC
Confidence 4444445555555555554444
No 5
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=75.96 E-value=66 Score=29.74 Aligned_cols=47 Identities=6% Similarity=-0.072 Sum_probs=23.6
Q ss_pred hccchhHHHHHHHHH-HhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023669 191 WRDAKYAQIYEYLRE-EYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNR 237 (279)
Q Consensus 191 We~~~le~lY~~l~~-~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~ 237 (279)
|-.++....+..+.+ .-.+.+..+.+.++++-+.+.+..+.+.-.++
T Consensus 209 ~~~~~~~~~~~dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~ 256 (318)
T TIGR00383 209 IQTEEVREYLRDIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNE 256 (318)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555443 33345555556666655555555544444443
No 6
>PRK09546 zntB zinc transporter; Reviewed
Probab=68.07 E-value=1.1e+02 Score=28.74 Aligned_cols=68 Identities=12% Similarity=0.151 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhccccc---cchhhhcc----chhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHH
Q 023669 160 RTKLIQLVGKANSNLADVILKVGLFE---RSEIAWRD----AKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFL 230 (279)
Q Consensus 160 rk~l~k~iG~l~~~r~~inl~~~lLD---~Pe~~We~----~~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l 230 (279)
++++.+.--++...|..+....+++. ..+.-|-. +++..+++.+.+..+ .++.+..+++.+.+.+...
T Consensus 181 ~~~l~~lrr~l~~lrr~l~p~~~~l~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~~---~l~~~~~~~~~l~d~~~s~ 255 (324)
T PRK09546 181 RGELALLRKQLIVMRRYMAPQRDVFARLASERLPWMSDDDRRRMQDIADRLGRGLD---DLDACIARTAVLADEIASV 255 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 45666655555555555443333321 11122322 345555555555543 4444444444444444333
No 7
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=58.54 E-value=86 Score=28.03 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=23.4
Q ss_pred hhhccchhHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Q 023669 189 IAWRDAKYAQIYEYLREEY-EVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLL 242 (279)
Q Consensus 189 ~~We~~~le~lY~~l~~~~-ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s~rL 242 (279)
.-|-.++....+..+.+.+ .+.++.+.+..+++-+.+.+....+.-.++...+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~m~~L 237 (292)
T PF01544_consen 183 SPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQDLYQSKLSNRQNRVMKVL 237 (292)
T ss_dssp STTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444433333333222 24455555555555444444444444444444443
No 8
>PHA02844 putative transmembrane protein; Provisional
Probab=49.58 E-value=77 Score=23.93 Aligned_cols=40 Identities=8% Similarity=0.041 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHHHHHH
Q 023669 221 KFVEHNIHFLQEVIQNR--------RSDLLEWCIIFLLTIENVISVYE 260 (279)
Q Consensus 221 ~~i~e~~~~l~~~l~~~--------~s~rLEwiIIiLI~vEI~l~l~~ 260 (279)
+-..+..++.+..++.+ +..+.-|++|++|++=+++.++-
T Consensus 18 dDFnnFI~vVksVLtd~~~s~~~~~~~~~~~~~~ii~i~~v~~~~~~~ 65 (75)
T PHA02844 18 EDFNNFIDVVKSVLSDDYDGVNKNNVCSSSTKIWILTIIFVVFATFLT 65 (75)
T ss_pred HHHHHHHHHHHHHHcCCCCCccccccCChhHHHHHHHHHHHHHHHHHH
Confidence 33456667777777665 33345455555555555544443
No 9
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=48.94 E-value=41 Score=21.82 Aligned_cols=29 Identities=10% Similarity=0.348 Sum_probs=22.8
Q ss_pred eeEEEEEecCcEEEEe-CChHHHHHHHHHH
Q 023669 43 CRYMVVFHYGSAVLFN-IEDHEVENYLHII 71 (279)
Q Consensus 43 ~~~vfiF~yGvVVfwn-~~~~e~~~~L~~l 71 (279)
..-.-||-.|.|..+| ++++..+.++...
T Consensus 5 ~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA 34 (36)
T PF06200_consen 5 TAQLTIFYGGQVCVFDDVPPDKAQEIMLLA 34 (36)
T ss_pred CCcEEEEECCEEEEeCCCCHHHHHHHHHHh
Confidence 4457788899998888 9998888877653
No 10
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=48.14 E-value=2.4e+02 Score=26.47 Aligned_cols=141 Identities=9% Similarity=0.061 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC-CC-CccHHHHHHHHHHH----HHHHHHhHhhc----cccccchhhhcc
Q 023669 124 GQSMALDYFVSQVDCLVEEFAGINRAMEKTG-TF-TMDRTKLIQLVGKA----NSNLADVILKV----GLFERSEIAWRD 193 (279)
Q Consensus 124 AQSvkL~~~E~~l~~~i~~~~~i~~~L~~~G-~~-~~~rk~l~k~iG~l----~~~r~~inl~~----~lLD~Pe~~We~ 193 (279)
+..+.+..++..++....-++.+-+++..-. .+ .-.+++.++.++++ ...|..+.... .+...+.. |-.
T Consensus 137 ~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~-~~~ 215 (322)
T COG0598 137 ADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLD-WLS 215 (322)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcc-cCC
Confidence 3455666677766666655555544443321 11 11122333333332 22222222111 11222222 555
Q ss_pred chhHHHHHHHHHHh-chhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 023669 194 AKYAQIYEYLREEY-EVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDL 272 (279)
Q Consensus 194 ~~le~lY~~l~~~~-ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s~rLEwiIIiLI~vEI~l~l~~~~~~~~~~~~~~ 272 (279)
++.+..++.+.+.. .+.++.+.+.++++-+.+.+.. .-+.++=-|+=+|=++=+++...-++....|.=++.
T Consensus 216 ~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s-------~is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~ 288 (322)
T COG0598 216 EEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLS-------LINNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKG 288 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCC
Confidence 55555555444332 2344455555555444444444 444444444444445555555555555555544443
No 11
>PHA02650 hypothetical protein; Provisional
Probab=42.65 E-value=1.1e+02 Score=23.34 Aligned_cols=16 Identities=13% Similarity=0.243 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhc
Q 023669 222 FVEHNIHFLQEVIQNR 237 (279)
Q Consensus 222 ~i~e~~~~l~~~l~~~ 237 (279)
-..+..++.+..++.+
T Consensus 19 DFnnFI~VVkSVLtD~ 34 (81)
T PHA02650 19 DFNNFIDVVKSVLSDE 34 (81)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3455666666666653
No 12
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=42.62 E-value=2.8e+02 Score=25.58 Aligned_cols=67 Identities=6% Similarity=0.076 Sum_probs=45.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhcccccchh
Q 023669 208 EVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLDLAC 274 (279)
Q Consensus 208 ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s~rLEwiIIiLI~vEI~l~l~~~~~~~~~~~~~~~~ 274 (279)
++..+.+.+.+..+.+++.++.+.+...+.-+.++=-++=.|=++-+++....++.+.+|.-++--|
T Consensus 220 dv~~~~~~l~~~~~~~~e~l~~l~d~~~~~~s~~~N~~mk~LTvvt~IflP~t~IaGiyGMNf~~mP 286 (318)
T TIGR00383 220 DIYDHILSLLEMIETYRELLSSLMDLYLSLVNNKMNEIMKILTVVSTIFIPLTFIAGIYGMNFKFMP 286 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCc
Confidence 3455677777777777777777777777777777766666666666767666666666665555333
No 13
>PRK04598 tatA twin arginine translocase protein A; Provisional
Probab=42.40 E-value=29 Score=26.63 Aligned_cols=27 Identities=15% Similarity=0.164 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHhhccc
Q 023669 242 LEWCIIFLLTIENVIS---VYEIVRDSTGVS 269 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~---l~~~~~~~~~~~ 269 (279)
-||+||++|++ ++|+ +-++..++|...
T Consensus 7 ~elliIlvivl-llFG~kKLPelg~~lGk~i 36 (81)
T PRK04598 7 WQLLIIAVIVV-LLFGTKKLRGIGSDLGSAV 36 (81)
T ss_pred HHHHHHHHHHH-HHhCcchHHHHHHHHHHHH
Confidence 37777777666 6665 346666666543
No 14
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=41.42 E-value=24 Score=27.23 Aligned_cols=30 Identities=23% Similarity=0.123 Sum_probs=21.3
Q ss_pred chhHHHHHHHHHHHHHH---HHHHHHHhhccccc
Q 023669 241 LLEWCIIFLLTIENVIS---VYEIVRDSTGVSLD 271 (279)
Q Consensus 241 rLEwiIIiLI~vEI~l~---l~~~~~~~~~~~~~ 271 (279)
..||+||++|++ ++|+ +-++.+.+|.+...
T Consensus 5 ~~ElliI~vI~l-llFGp~KLP~~~r~lGk~ir~ 37 (84)
T PRK00191 5 PWEIGIIVLLII-VLFGAKKLPDAARSIGRSMRI 37 (84)
T ss_pred HHHHHHHHHHHH-HHhcchHHHHHHHHHHHHHHH
Confidence 458998888877 6666 46777777776543
No 15
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=41.30 E-value=97 Score=24.57 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=28.2
Q ss_pred chhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023669 194 AKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVI 234 (279)
Q Consensus 194 ~~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l 234 (279)
.+-++.|.+.+.|+++++|.+-....|.--.+-+....+.+
T Consensus 50 ~~~e~~Y~Qs~~Yv~~NerLqqa~~~Lkkk~e~L~~age~L 90 (97)
T PF15136_consen 50 SEREQQYQQSRTYVAMNERLQQARDQLKKKCEELRQAGEEL 90 (97)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999998766555544444444444443
No 16
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=39.21 E-value=2.3e+02 Score=26.55 Aligned_cols=73 Identities=11% Similarity=0.116 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHhchhhH-----HHHHHHHHHHHHHHHHHHHHHHH-----------------hccccchhHHHHHHHHH
Q 023669 195 KYAQIYEYLREEYEVAQR-----FGNLDFKLKFVEHNIHFLQEVIQ-----------------NRRSDLLEWCIIFLLTI 252 (279)
Q Consensus 195 ~le~lY~~l~~~~ei~~R-----~~~Ln~KL~~i~e~~~~l~~~l~-----------------~~~s~rLEwiIIiLI~v 252 (279)
+..++.+.+.-+.++-.+ ...+|.+.+-+.-.+.++.-.+- ..+... =|.+++...+
T Consensus 228 ~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel~~~~-Gy~~~l~~m~ 306 (322)
T COG0598 228 HLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPELDWPY-GYPIALILML 306 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCCCCcc-cHHHHHHHHH
Confidence 344445555444444333 34567777777777776665531 222222 2345555666
Q ss_pred HHHHHHHHHHHHhhcc
Q 023669 253 ENVISVYEIVRDSTGV 268 (279)
Q Consensus 253 EI~l~l~~~~~~~~~~ 268 (279)
=+++.++-+|+++||+
T Consensus 307 ~~~~~~~~~frrk~Wl 322 (322)
T COG0598 307 LLALLLYLYFRRKGWL 322 (322)
T ss_pred HHHHHHHHHHHhcCcC
Confidence 6777788899999985
No 17
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=37.31 E-value=1.4e+02 Score=23.51 Aligned_cols=39 Identities=23% Similarity=0.134 Sum_probs=29.4
Q ss_pred hccchhH---HHHHHH----HHHhchhhHHHHHHHHHHHHHHHHHH
Q 023669 191 WRDAKYA---QIYEYL----REEYEVAQRFGNLDFKLKFVEHNIHF 229 (279)
Q Consensus 191 We~~~le---~lY~~l----~~~~ei~~R~~~Ln~KL~~i~e~~~~ 229 (279)
|+....+ .=|.++ -.|.+-+.|+.-|-.||.+|..++.-
T Consensus 53 ~ey~~i~~I~~eY~k~Kk~~p~y~~~K~Rc~yL~~KL~HIK~~I~~ 98 (101)
T PF07303_consen 53 QEYKRIAQILQEYNKKKKRDPNYQEKKKRCEYLHNKLSHIKQLIQD 98 (101)
T ss_dssp HHHHHHH---HHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 556666 46889999999999999999887654
No 18
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=36.01 E-value=1e+02 Score=25.52 Aligned_cols=46 Identities=22% Similarity=0.270 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 023669 195 KYAQIYEYLREE-YEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSD 240 (279)
Q Consensus 195 ~le~lY~~l~~~-~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s~ 240 (279)
.++++|+.+..- =++..|++.|..|++-+.++.+.+.+.+..-++.
T Consensus 51 ql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~d 97 (126)
T PF07889_consen 51 QLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRED 97 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 467777776653 3467999999999999999999999988765543
No 19
>PRK01833 tatA twin arginine translocase protein A; Provisional
Probab=35.64 E-value=43 Score=25.23 Aligned_cols=27 Identities=11% Similarity=0.115 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHhhccc
Q 023669 242 LEWCIIFLLTIENVIS---VYEIVRDSTGVS 269 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~---l~~~~~~~~~~~ 269 (279)
-||+||++|++ ++|+ +-++.+++|...
T Consensus 7 ~elliIl~i~l-llFG~kKLP~l~~~lGk~i 36 (74)
T PRK01833 7 WQLLIIVAIIV-LLFGTKKLRTLGTDLGESV 36 (74)
T ss_pred HHHHHHHHHHH-HHhCcchHHHHHHHHHHHH
Confidence 47888877775 5555 346666666543
No 20
>PRK03554 tatA twin arginine translocase protein A; Provisional
Probab=35.40 E-value=42 Score=26.17 Aligned_cols=27 Identities=15% Similarity=0.127 Sum_probs=17.0
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHhhccc
Q 023669 242 LEWCIIFLLTIENVIS---VYEIVRDSTGVS 269 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~---l~~~~~~~~~~~ 269 (279)
.||+||++|++ ++|+ +-++..++|...
T Consensus 7 ~eLlIIlvIvL-LlFG~kKLPelgr~LGkai 36 (89)
T PRK03554 7 WQLLIIAVIVV-LLFGTKKLGSIGSDLGASI 36 (89)
T ss_pred HHHHHHHHHHH-HHhCcchHHHHHHHHHHHH
Confidence 47777777776 6565 346666666543
No 21
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=35.22 E-value=74 Score=23.19 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023669 209 VAQRFGNLDFKLKFVEHNIHFLQEVIQNR 237 (279)
Q Consensus 209 i~~R~~~Ln~KL~~i~e~~~~l~~~l~~~ 237 (279)
+.+|+.-|..|+.+..++++-|++.+..+
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Q 30 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQ 30 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999998653
No 22
>PHA02975 hypothetical protein; Provisional
Probab=34.19 E-value=1.9e+02 Score=21.45 Aligned_cols=40 Identities=18% Similarity=0.318 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHhc----cccchhHHHHHHHHHHHHHHHHHH
Q 023669 222 FVEHNIHFLQEVIQNR----RSDLLEWCIIFLLTIENVISVYEI 261 (279)
Q Consensus 222 ~i~e~~~~l~~~l~~~----~s~rLEwiIIiLI~vEI~l~l~~~ 261 (279)
-..+..++.+..++.+ +..+.=|++|++|++=+++.++-+
T Consensus 19 DF~nFI~vVksVLtdk~~~~~~~~~~~~~ii~i~~v~~~~~~~f 62 (69)
T PHA02975 19 DFEDFIDTIMHVLTGKKEPKKKSSLSIILIIFIIFITCIAVFTF 62 (69)
T ss_pred HHHHHHHHHHHHHcCCCCCCcCCchHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666654 234555555555555555555443
No 23
>PRK14860 tatA twin arginine translocase protein A; Provisional
Probab=34.00 E-value=33 Score=25.13 Aligned_cols=28 Identities=14% Similarity=0.237 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHhhcccc
Q 023669 242 LEWCIIFLLTIENVIS---VYEIVRDSTGVSL 270 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~---l~~~~~~~~~~~~ 270 (279)
-||+||++|++ ++|+ +-++.+++|....
T Consensus 7 ~ElliI~vIal-llfGp~kLP~l~r~lGk~ir 37 (64)
T PRK14860 7 PELIVILVIAL-VVFGPAKLPQLGQALGGAIR 37 (64)
T ss_pred HHHHHHHHHHH-hhcCchHHHHHHHHHHHHHH
Confidence 48888887776 5555 3466666665543
No 24
>PHA02819 hypothetical protein; Provisional
Probab=33.84 E-value=1.1e+02 Score=22.85 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=10.4
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 023669 240 DLLEWCIIFLLTIENVISVYE 260 (279)
Q Consensus 240 ~rLEwiIIiLI~vEI~l~l~~ 260 (279)
.+.=|++|++|++=+++.++-
T Consensus 43 ~~~~~~~ii~l~~~~~~~~~~ 63 (71)
T PHA02819 43 SFLRYYLIIGLVTIVFVIIFI 63 (71)
T ss_pred ChhHHHHHHHHHHHHHHHHHH
Confidence 445555555555544444443
No 25
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.82 E-value=2.3e+02 Score=25.50 Aligned_cols=71 Identities=13% Similarity=0.276 Sum_probs=41.3
Q ss_pred HHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHH-------HHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 023669 197 AQIYEYLREEYEV-AQRFGNLDFKLKFVEHNIHF-------LQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGV 268 (279)
Q Consensus 197 e~lY~~l~~~~ei-~~R~~~Ln~KL~~i~e~~~~-------l~~~l~~~~s~rLEwiIIiLI~vEI~l~l~~~~~~~~~~ 268 (279)
+.+|.+..+..++ ..|++.||.|+.-|+.-.+. +++....-.|.-+=|.|+= +++=++..+++|=+-.+-|
T Consensus 131 a~l~a~~ke~~k~l~~Rv~~L~~~~~~IrkEQ~~~R~RE~~FR~tSES~NsRvm~Wsv~Q-~vvL~~tc~wQmrhL~~FF 209 (215)
T KOG1690|consen 131 ANLDAQIKETDKLLEGRVRQLNSRLESIRKEQNLQREREETFRDTSESANSRVMWWSVAQ-LVVLLVTCIWQMRHLKSFF 209 (215)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcceeeehhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3455555544443 45888999998866654443 4455555666666665544 4444556677765444333
No 26
>PRK14857 tatA twin arginine translocase protein A; Provisional
Probab=33.67 E-value=34 Score=26.70 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHhhccc
Q 023669 242 LEWCIIFLLTIENVIS---VYEIVRDSTGVS 269 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~---l~~~~~~~~~~~ 269 (279)
-||+||++|++ ++|+ +-++.+.+|...
T Consensus 9 ~ElliIlvVaL-lvfGP~KLP~lar~lGk~i 38 (90)
T PRK14857 9 PEMAVILVIAL-LVFGPKKLPEIGRSLGKTL 38 (90)
T ss_pred HHHHHHHHHHH-HHcCchHHHHHHHHHHHHH
Confidence 48888887765 6666 456667776654
No 27
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=33.53 E-value=49 Score=23.05 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHhhccc
Q 023669 242 LEWCIIFLLTIENVIS---VYEIVRDSTGVS 269 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~---l~~~~~~~~~~~ 269 (279)
-||+||++|++ ++|+ +-++.+++|...
T Consensus 4 ~El~iI~vval-llfGp~kLP~~~r~lG~~i 33 (53)
T PF02416_consen 4 PELLIILVVAL-LLFGPKKLPELARSLGKAI 33 (53)
T ss_dssp HHHHHHHHHHH-HHS-TTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHhCchHHHHHHHHHHHHH
Confidence 58888888777 4555 457777776554
No 28
>PRK01614 tatE twin arginine translocase protein A; Validated
Probab=33.40 E-value=49 Score=25.58 Aligned_cols=27 Identities=7% Similarity=0.089 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHhhccc
Q 023669 242 LEWCIIFLLTIENVIS---VYEIVRDSTGVS 269 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~---l~~~~~~~~~~~ 269 (279)
-||+||++|++ ++|+ +-++..++|...
T Consensus 7 ~ELLIIlvIvL-LLFG~kKLPeLgr~LGkaI 36 (85)
T PRK01614 7 TKLLVVGILIV-LLFGTSKLRTLGADLGAAL 36 (85)
T ss_pred HHHHHHHHHHH-HHhCcchHHHHHHHHHHHH
Confidence 37888777766 5555 345556665543
No 29
>PRK00736 hypothetical protein; Provisional
Probab=33.26 E-value=87 Score=22.92 Aligned_cols=31 Identities=16% Similarity=0.339 Sum_probs=27.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023669 208 EVAQRFGNLDFKLKFVEHNIHFLQEVIQNRR 238 (279)
Q Consensus 208 ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~ 238 (279)
.+..|+.-|..|+.+..++++-|++.+..+.
T Consensus 2 ~~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq 32 (68)
T PRK00736 2 DAEERLTELEIRVAEQEKTIEELSDQLAEQW 32 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999987654
No 30
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=32.23 E-value=93 Score=23.40 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=23.2
Q ss_pred eeEEEEEecCcEEEEeC-ChHHHHHHHHHHH
Q 023669 43 CRYMVVFHYGSAVLFNI-EDHEVENYLHIIR 72 (279)
Q Consensus 43 ~~~vfiF~yGvVVfwn~-~~~e~~~~L~~l~ 72 (279)
.-.+-+|+.|.|++-|. ++++....++.+-
T Consensus 49 ~~t~~IF~sGki~itGaks~~~~~~a~~~i~ 79 (86)
T PF00352_consen 49 KATVLIFSSGKIVITGAKSEEEAKKAIEKIL 79 (86)
T ss_dssp TEEEEEETTSEEEEEEESSHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEEEecCCHHHHHHHHHHHH
Confidence 46799999999999998 6777666555443
No 31
>PRK02119 hypothetical protein; Provisional
Probab=31.56 E-value=83 Score=23.37 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023669 208 EVAQRFGNLDFKLKFVEHNIHFLQEVIQNRR 238 (279)
Q Consensus 208 ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~ 238 (279)
++.+|+.-|..|+.+-.++++-|++.+..+.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq 36 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQ 36 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999987654
No 32
>PRK02793 phi X174 lysis protein; Provisional
Probab=30.03 E-value=98 Score=22.89 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=27.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023669 208 EVAQRFGNLDFKLKFVEHNIHFLQEVIQNRR 238 (279)
Q Consensus 208 ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~ 238 (279)
++.+|+.-|..|+.+-.++++-|++.+..+.
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq 35 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHE 35 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999987654
No 33
>PRK14861 tatA twin arginine translocase protein A; Provisional
Probab=30.02 E-value=45 Score=24.11 Aligned_cols=27 Identities=7% Similarity=0.130 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHH---HHHHHHHhhccc
Q 023669 242 LEWCIIFLLTIENVIS---VYEIVRDSTGVS 269 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~---l~~~~~~~~~~~ 269 (279)
-||+||+.|++ ++++ +-++.+.+|...
T Consensus 8 ~ElliI~vi~l-lvfGp~kLP~l~r~~G~~~ 37 (61)
T PRK14861 8 PGLILILVVAL-IIFGPKKLPELGKALGKTL 37 (61)
T ss_pred HHHHHHHHHHH-HhcCchHHHHHHHHHHHHH
Confidence 48888888877 6666 456667766654
No 34
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=29.66 E-value=2.4e+02 Score=24.35 Aligned_cols=53 Identities=21% Similarity=0.219 Sum_probs=33.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHH
Q 023669 209 VAQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIV 262 (279)
Q Consensus 209 i~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s~rLEwiIIiLI~vEI~l~l~~~~ 262 (279)
+..|.+.+.+.|.-+.+.-.-+.. ..++++.|+=|....+.++..++-.+=-|
T Consensus 62 l~~~l~~~~~el~~le~~k~~id~-~A~~~~~~~~w~gl~~l~~q~~~l~rLTf 114 (180)
T PF04678_consen 62 LRKRLEELRQELAPLEKIKQEIDE-KAEKRARRLLWGGLALLVVQFGILARLTF 114 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555555555555544444433 34588888989999999988877665333
No 35
>PRK04406 hypothetical protein; Provisional
Probab=29.44 E-value=93 Score=23.29 Aligned_cols=31 Identities=23% Similarity=0.538 Sum_probs=27.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023669 208 EVAQRFGNLDFKLKFVEHNIHFLQEVIQNRR 238 (279)
Q Consensus 208 ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~ 238 (279)
.+.+|+.-|..|+.+..++++-|++.+..+.
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq 38 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQ 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4779999999999999999999999987654
No 36
>PRK00295 hypothetical protein; Provisional
Probab=28.98 E-value=1.1e+02 Score=22.30 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=27.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023669 208 EVAQRFGNLDFKLKFVEHNIHFLQEVIQNRR 238 (279)
Q Consensus 208 ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~ 238 (279)
.+.+|+.-|..|+.+..++++-|++.+..+.
T Consensus 2 ~~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq 32 (68)
T PRK00295 2 SLEERVTELESRQAFQDDTIQALNDVLVEQQ 32 (68)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999987654
No 37
>PHA03054 IMV membrane protein; Provisional
Probab=28.77 E-value=2.2e+02 Score=21.27 Aligned_cols=56 Identities=9% Similarity=0.115 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhc--------cccchhHHHHHHHHHHHHHHHHH
Q 023669 197 AQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNR--------RSDLLEWCIIFLLTIENVISVYE 260 (279)
Q Consensus 197 e~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~--------~s~rLEwiIIiLI~vEI~l~l~~ 260 (279)
+++|..+-..|=-++ -+ -..+.++..+..++.+ +..+.=|++|++|++=+++.++-
T Consensus 2 dkLya~ifGvF~ss~-d~-------Df~~Fi~vV~sVl~dk~~~~~~~~~~~~~~~~~ii~l~~v~~~~l~~ 65 (72)
T PHA03054 2 DKLYAAIFGVFMGSP-ED-------DLTDFIEIVKSVLSDEKTVTSTNNTGCWGWYWLIIIFFIVLILLLLI 65 (72)
T ss_pred hhHHHHHHHHhhCCc-hH-------HHHHHHHHHHHHHcCCCCcccccccCCchHHHHHHHHHHHHHHHHHH
Confidence 466666665553333 22 2334455555555544 33445555555555555444443
No 38
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=27.89 E-value=2.7e+02 Score=21.06 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023669 213 FGNLDFKLKFVEHNIHFLQEVIQN 236 (279)
Q Consensus 213 ~~~Ln~KL~~i~e~~~~l~~~l~~ 236 (279)
....++|+.+...+++++..++..
T Consensus 74 ~~l~deKv~lA~~~~d~v~~hi~r 97 (105)
T PF12998_consen 74 LELSDEKVALAQQAYDLVDRHIRR 97 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999887653
No 39
>PRK04325 hypothetical protein; Provisional
Probab=27.47 E-value=1.1e+02 Score=22.78 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=27.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 023669 209 VAQRFGNLDFKLKFVEHNIHFLQEVIQNRR 238 (279)
Q Consensus 209 i~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~ 238 (279)
+.+|+.-|..|+.+-.++++-|++.+..+.
T Consensus 7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq 36 (74)
T PRK04325 7 MEDRITELEIQLAFQEDLIDGLNATVARQQ 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 668999999999999999999999997654
No 40
>PRK14858 tatA twin arginine translocase protein A; Provisional
Probab=27.27 E-value=47 Score=26.83 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHHHHH---HHHHHHHhhcccc
Q 023669 241 LLEWCIIFLLTIENVIS---VYEIVRDSTGVSL 270 (279)
Q Consensus 241 rLEwiIIiLI~vEI~l~---l~~~~~~~~~~~~ 270 (279)
..||+||++|++ |+|+ +-++.+.+|....
T Consensus 6 ~~ElliIlvVal-lvfGPkKLPelar~lGk~i~ 37 (108)
T PRK14858 6 MPELIVILVIAL-IVIGPQKLPDLARSLGRGLA 37 (108)
T ss_pred HHHHHHHHHHHH-HhcCchHHHHHHHHHHHHHH
Confidence 358888888777 5565 3567777776543
No 41
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=25.82 E-value=89 Score=18.78 Aligned_cols=21 Identities=5% Similarity=0.012 Sum_probs=14.9
Q ss_pred cceeEEEEEecCcEEEEeCCh
Q 023669 41 SHCRYMVVFHYGSAVLFNIED 61 (279)
Q Consensus 41 ~~~~~vfiF~yGvVVfwn~~~ 61 (279)
+..-.+++.+.|.|..||-+.
T Consensus 7 G~~ht~al~~~g~v~~wG~n~ 27 (30)
T PF13540_consen 7 GGYHTCALTSDGEVYCWGDNN 27 (30)
T ss_dssp ESSEEEEEE-TTEEEEEE--T
T ss_pred cCCEEEEEEcCCCEEEEcCCc
Confidence 445679999999999999764
No 42
>PRK06746 peptide chain release factor 2; Provisional
Probab=24.98 E-value=1.3e+02 Score=28.85 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=31.6
Q ss_pred cchhhhccc-hhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHH
Q 023669 186 RSEIAWRDA-KYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQ 231 (279)
Q Consensus 186 ~Pe~~We~~-~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~ 231 (279)
.|+ ||+++ .+.++...+.+.-++-..++.+....+-+.++.+++.
T Consensus 3 ~~~-fw~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~ 48 (326)
T PRK06746 3 GAG-FWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLK 48 (326)
T ss_pred CCc-hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 477 58886 5667777777777777777777777777766666653
No 43
>KOG2870 consensus NADH:ubiquinone oxidoreductase, NDUFS2/49 kDa subunit [Energy production and conversion]
Probab=24.68 E-value=2.9e+02 Score=26.91 Aligned_cols=81 Identities=16% Similarity=0.215 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCccHHH--HHHHHHHHHHHHHHhH-hhccccc----cchhh
Q 023669 118 VIGSVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTK--LIQLVGKANSNLADVI-LKVGLFE----RSEIA 190 (279)
Q Consensus 118 aiS~aLAQSvkL~~~E~~l~~~i~~~~~i~~~L~~~G~~~~~rk~--l~k~iG~l~~~r~~in-l~~~lLD----~Pe~~ 190 (279)
++-+||--.-+|+|.-.+.+..+-+.. .++-+++.+.+++ +--++|++-.+.+.+. +..-.+| || ||
T Consensus 117 ty~QaLPYfdRlDYvsmM~nE~a~sla-----vEkLlni~vP~RA~yIRvlf~EitRi~nH~malgt~alDvGA~TP-ff 190 (452)
T KOG2870|consen 117 TYTQALPYFDRLDYVSMMCNEQAYSLA-----VEKLLNIDVPLRAKYIRVLFGEITRIANHIMALGTHALDVGAMTP-FF 190 (452)
T ss_pred HHHhhcccchHHHHHHHHHHHHHHHhh-----HHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhcchhhccccccc-hh
Confidence 778889999999999998888876644 5555777765433 4445666655544433 3334455 44 88
Q ss_pred hccchhHHHHHHHH
Q 023669 191 WRDAKYAQIYEYLR 204 (279)
Q Consensus 191 We~~~le~lY~~l~ 204 (279)
|-.++=|++|+--.
T Consensus 191 w~FeEREkl~ef~E 204 (452)
T KOG2870|consen 191 WLFEEREKLYEFYE 204 (452)
T ss_pred hhhHHHHHHHHHHH
Confidence 99888888876443
No 44
>PF09418 DUF2009: Protein of unknown function (DUF2009); InterPro: IPR018553 This is a eukaryotic family of proteins with unknown function.
Probab=23.37 E-value=1.7e+02 Score=29.45 Aligned_cols=87 Identities=13% Similarity=0.298 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCCCCc-----cHHHHHHHHHHHHHHHHHhHhhccccccchhhhccchhHHHHHH
Q 023669 128 ALDYFVSQVDCLVEEFAGINRAMEKTGTFTM-----DRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEY 202 (279)
Q Consensus 128 kL~~~E~~l~~~i~~~~~i~~~L~~~G~~~~-----~rk~l~k~iG~l~~~r~~inl~~~lLD~Pe~~We~~~le~lY~~ 202 (279)
+|..=|..+-++++..-++.+. |.++.+ ..+.+.+.+-++..+...+..-.+. +.=.-++++.++..-=.-
T Consensus 9 RLt~~ERk~LrLLEAAL~VSEY---TDkVDi~s~~sk~kRi~~qlkeicsiLsGLvvA~d~-k~Gq~L~~~kdf~~n~~f 84 (458)
T PF09418_consen 9 RLTYEERKLLRLLEAALNVSEY---TDKVDIISYKSKAKRIVEQLKEICSILSGLVVASDY-KKGQKLLEDKDFSDNAEF 84 (458)
T ss_pred cCCHHHHHHHHHHHHHhhhhhC---cCccchhccCCHHHHHHHHHHHHHHHHHHHHHHccH-HHhhHHhcCCChHHHHHH
Confidence 4555666666777665554433 222321 2355667777777766666654443 112223443333333344
Q ss_pred HHHHhchhhHHHHHHH
Q 023669 203 LREEYEVAQRFGNLDF 218 (279)
Q Consensus 203 l~~~~ei~~R~~~Ln~ 218 (279)
..+.|||.+|++++|=
T Consensus 85 fQ~vFEIgRRYKIMNP 100 (458)
T PF09418_consen 85 FQDVFEIGRRYKIMNP 100 (458)
T ss_pred HHHHHHHHHHHhhhCH
Confidence 5778999999999995
No 45
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=23.35 E-value=1.1e+02 Score=30.04 Aligned_cols=62 Identities=11% Similarity=0.105 Sum_probs=36.7
Q ss_pred CcEEEEeCChHHH-HHHHHHHHHhhcCCCCcC-cccceEEEecCCcccccccCCCEEEecCCCc
Q 023669 52 GSAVLFNIEDHEV-ENYLHIIRRHASGMLPEM-RKDDYAIKEKPLLAEDMQGGPDYIVLKNLDT 113 (279)
Q Consensus 52 GvVVfwn~~~~e~-~~~L~~l~~~~~~~~~~~-~~ee~~~~~~~~~~~~~~i~~D~I~L~~~d~ 113 (279)
-++|+||++|-+- -+-++.-.-|..+...+. ..|..-+.++|..+...+..+.++.++-.+.
T Consensus 142 DviVyWGtNP~~shPRhmSRYs~f~RG~~~~rGr~dRtvIvVD~RkT~TAklad~~~qi~p~sD 205 (429)
T COG1029 142 DVIVYWGTNPMHSHPRHMSRYSVFPRGFFRPRGREDRTVIVVDPRKTATAKLADNHVQIKPNSD 205 (429)
T ss_pred cEEEEeCCCcccccchhhhhcccccccccccCCcccceEEEEecCcCchhhhhhheEecCCCCc
Confidence 4689999998642 112222223444554444 4566777888876555566766777765443
No 46
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=23.12 E-value=1.1e+02 Score=27.09 Aligned_cols=81 Identities=14% Similarity=0.128 Sum_probs=31.0
Q ss_pred cccccchhhhccchh-HHH--HHHHHHHhchhhH-HHHHHHHHHHHHHHHHHHHHHH--HhccccchhHHHHHHHHHHHH
Q 023669 182 GLFERSEIAWRDAKY-AQI--YEYLREEYEVAQR-FGNLDFKLKFVEHNIHFLQEVI--QNRRSDLLEWCIIFLLTIENV 255 (279)
Q Consensus 182 ~lLD~Pe~~We~~~l-e~l--Y~~l~~~~ei~~R-~~~Ln~KL~~i~e~~~~l~~~l--~~~~s~rLEwiIIiLI~vEI~ 255 (279)
.+.++||||.++|++ ..+ -..-.....+.+| .+.|.+|..-+++-++-|.+.. |.+...++--...-|+..+=+
T Consensus 14 yL~~~PdFf~~~~~ll~~l~~ph~~~~avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~sl 93 (225)
T PF04340_consen 14 YLRQHPDFFERHPELLAELRLPHPSGGAVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHRLVLALLAARSL 93 (225)
T ss_dssp ---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--SH
T ss_pred HHHhCcHHHHhCHHHHHHcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 567899999999976 221 1122334444444 5666667666666666666554 345556666666666665544
Q ss_pred HHHHHHH
Q 023669 256 ISVYEIV 262 (279)
Q Consensus 256 l~l~~~~ 262 (279)
-.+.+.+
T Consensus 94 ~~l~~~L 100 (225)
T PF04340_consen 94 QELLQAL 100 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 47
>PRK10963 hypothetical protein; Provisional
Probab=22.63 E-value=1.4e+02 Score=26.65 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=38.7
Q ss_pred cccccchhhhccchhHHHHHHHHHHhchh----------hH-HHHHHHHHHHHHHHHHHHHHHHH--hccccchhHHHHH
Q 023669 182 GLFERSEIAWRDAKYAQIYEYLREEYEVA----------QR-FGNLDFKLKFVEHNIHFLQEVIQ--NRRSDLLEWCIIF 248 (279)
Q Consensus 182 ~lLD~Pe~~We~~~le~lY~~l~~~~ei~----------~R-~~~Ln~KL~~i~e~~~~l~~~l~--~~~s~rLEwiIIi 248 (279)
.+.++||||.++|++ ...+.++ +| .+.|.+|..-+++-+.-|.+... .+-..++=-.+.-
T Consensus 11 yL~~~PdFf~~h~~L-------l~~L~lph~~~gaVSL~ErQ~~~LR~r~~~Le~~l~~Li~~A~~Ne~l~~~~~~l~l~ 83 (223)
T PRK10963 11 YLLQNPDFFIRNARL-------VEQMRVPHPVRGTVSLVEWQMARQRNHIHVLEEEMTLLMEQAIANEDLFYRLLPLQSR 83 (223)
T ss_pred HHHHCchHHhhCHHH-------HHhccCCCCCCCeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999987 3344443 22 45555555555555555544432 2333333333444
Q ss_pred HHHHHHHHHHHHHH
Q 023669 249 LLTIENVISVYEIV 262 (279)
Q Consensus 249 LI~vEI~l~l~~~~ 262 (279)
|+..+=+-.+.+.+
T Consensus 84 Ll~a~~~~~l~~~L 97 (223)
T PRK10963 84 LAAADSLQDMLMRL 97 (223)
T ss_pred HhcCCCHHHHHHHH
Confidence 55443333333333
No 48
>PRK05589 peptide chain release factor 2; Provisional
Probab=22.60 E-value=1.7e+02 Score=28.02 Aligned_cols=46 Identities=13% Similarity=0.260 Sum_probs=34.8
Q ss_pred cchhhhccc-hhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 023669 186 RSEIAWRDA-KYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQE 232 (279)
Q Consensus 186 ~Pe~~We~~-~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~ 232 (279)
.|++ |++| .+.++-..+.+.-++-..++.+..+++-+.++.+++.+
T Consensus 3 ~p~~-w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~~l~~~ 49 (325)
T PRK05589 3 EPNF-WNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLCEMMSE 49 (325)
T ss_pred Cchh-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4665 8886 55677777887778888888888888888888777743
No 49
>PRK00846 hypothetical protein; Provisional
Probab=22.06 E-value=1.7e+02 Score=22.21 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=27.2
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023669 207 YEVAQRFGNLDFKLKFVEHNIHFLQEVIQNR 237 (279)
Q Consensus 207 ~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~ 237 (279)
=++.+|+.-|..|+.+-.++++-|.+.+..+
T Consensus 9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~q 39 (77)
T PRK00846 9 QALEARLVELETRLSFQEQALTELSEALADA 39 (77)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577999999999999999999999988763
No 50
>PRK14762 membrane protein; Provisional
Probab=21.48 E-value=1e+02 Score=18.46 Aligned_cols=17 Identities=35% Similarity=0.725 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023669 246 IIFLLTIENVISVYEIV 262 (279)
Q Consensus 246 IIiLI~vEI~l~l~~~~ 262 (279)
||.||..-++.+++.++
T Consensus 10 iifligllvvtgvfkli 26 (27)
T PRK14762 10 IIFLIGLLVVTGVFKMI 26 (27)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 45666666666666654
No 51
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=21.16 E-value=1.5e+02 Score=23.58 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023669 213 FGNLDFKLKFVEHNIHFLQEVIQN 236 (279)
Q Consensus 213 ~~~Ln~KL~~i~e~~~~l~~~l~~ 236 (279)
+++|.+|++|++++++.|.-.+..
T Consensus 70 v~~l~RRiDYV~~Ni~tleKql~~ 93 (99)
T PF13758_consen 70 VDVLSRRIDYVQQNIETLEKQLEA 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999877654
No 52
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=20.09 E-value=4.1e+02 Score=23.85 Aligned_cols=70 Identities=19% Similarity=0.140 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhHhhccccccchhhhcc-chhHHHHHHHHHHhchhhHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 023669 162 KLIQLVGKANSNLADVILKVGLFERSEIAWRD-AKYAQIYEYLREEYEVAQRFG-NLDFKLKFVEHNIHFLQEVIQN 236 (279)
Q Consensus 162 ~l~k~iG~l~~~r~~inl~~~lLD~Pe~~We~-~~le~lY~~l~~~~ei~~R~~-~Ln~KL~~i~e~~~~l~~~l~~ 236 (279)
-+...+|++-..--....+ ++-+..|.. .-++.+|..+... +-+.=+. .|.+|+|+....++-..+-+..
T Consensus 116 Gl~D~vGELrR~~le~l~~----~~~~~Ae~~~~~ME~lY~~Lm~f-dyP~~l~~~LR~K~Dvar~~lekt~~dl~~ 187 (204)
T COG2178 116 GLADAVGELRRHVLELLRK----GSFEEAERFLKFMEKLYEELMEF-DYPKALVPGLRQKQDVARSLLEKTKSDLFR 187 (204)
T ss_pred HHHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHHhc-CCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778775432222222 223444554 3478999988876 8887777 8999999999888766655443
Done!