Query 023669
Match_columns 279
No_of_seqs 126 out of 481
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:47:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023669.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023669hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oiq_B DNA polymerase alpha ca 63.2 5.1 0.00017 24.7 2.4 24 124-148 5-28 (36)
2 2iub_A CORA, divalent cation t 56.0 1.2E+02 0.004 27.5 12.4 62 210-271 267-328 (363)
3 1uii_A Geminin; human, DNA rep 52.4 31 0.0011 25.5 5.6 51 186-236 25-78 (83)
4 2pnv_A Small conductance calci 48.6 24 0.00084 22.8 4.0 27 208-234 13-39 (43)
5 4ev6_A Magnesium transport pro 43.5 1.8E+02 0.0061 26.0 11.9 18 50-67 46-66 (339)
6 2pnv_A Small conductance calci 38.3 36 0.0012 22.0 3.5 26 204-229 16-41 (43)
7 3ghg_A Fibrinogen alpha chain; 37.9 1.9E+02 0.0066 28.3 10.1 98 128-246 54-154 (562)
8 3ck6_A Putative membrane trans 34.1 2.1E+02 0.0072 24.0 11.3 26 127-152 137-162 (252)
9 1wlq_A Geminin; coiled-coil; 2 33.2 79 0.0027 23.3 5.1 51 186-236 17-70 (83)
10 3efg_A Protein SLYX homolog; x 30.7 57 0.002 23.5 4.0 31 207-237 10-40 (78)
11 2wvr_A Geminin; DNA replicatio 27.3 1.1E+02 0.0038 26.2 5.8 50 186-235 94-146 (209)
12 1deq_A Fibrinogen (alpha chain 26.0 4.1E+02 0.014 24.9 11.8 49 196-246 107-157 (390)
13 2oqq_A Transcription factor HY 24.2 1.1E+02 0.0038 19.6 3.9 29 207-235 13-41 (42)
14 1xaw_A Occludin; coiled-coil, 23.3 1.9E+02 0.0067 23.2 6.3 25 206-230 111-135 (140)
15 3hd7_A Vesicle-associated memb 22.7 2.3E+02 0.0077 20.7 7.4 34 202-235 24-57 (91)
No 1
>3oiq_B DNA polymerase alpha catalytic subunit A; OB fold, dimer, dimeric complex, protein binding; HET: DNA; 2.40A {Saccharomyces cerevisiae}
Probab=63.16 E-value=5.1 Score=24.68 Aligned_cols=24 Identities=21% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 023669 124 GQSMALDYFVSQVDCLVEEFAGINR 148 (279)
Q Consensus 124 AQSvkL~~~E~~l~~~i~~~~~i~~ 148 (279)
+||+|+ .|++.+..+++.+++-|.
T Consensus 5 s~~~K~-R~~nDvq~Ll~DVENSP~ 28 (36)
T 3oiq_B 5 LQSRKL-RYANDVQDLLDDVENSPV 28 (36)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHSCS
T ss_pred hHHHHH-HHHhhHHHHHHHhhcCch
Confidence 689999 889999999999887664
No 2
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=55.99 E-value=1.2e+02 Score=27.52 Aligned_cols=62 Identities=10% Similarity=0.067 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhhccccc
Q 023669 210 AQRFGNLDFKLKFVEHNIHFLQEVIQNRRSDLLEWCIIFLLTIENVISVYEIVRDSTGVSLD 271 (279)
Q Consensus 210 ~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s~rLEwiIIiLI~vEI~l~l~~~~~~~~~~~~~ 271 (279)
.++..-+.+.++.+.+.++.+.+...+.-|.++=-++=.|=++=++|...-++...+|.-++
T Consensus 267 ~d~~~~~~e~~~~~re~l~~l~d~~~s~is~~~N~imk~LTiit~IflP~T~IaGiyGMNf~ 328 (363)
T 2iub_A 267 YDHTIQIADTVETFRDIVSGLLDVYLSSVSNKTNEVMKVLTIIATIFMPLTFIAGIYGMNFE 328 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Confidence 44455555666666666666666555555555555665666666666666666555554443
No 3
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.44 E-value=31 Score=25.47 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=44.4
Q ss_pred cchhhhcc---chhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023669 186 RSEIAWRD---AKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQN 236 (279)
Q Consensus 186 ~Pe~~We~---~~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~ 236 (279)
.|+-||+. ..-..|++.+.+--++..+++.++..+..++...+-++++..+
T Consensus 25 Pse~YWk~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 25 PSSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889996 3557899999999999999999999999999999999888765
No 4
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=48.60 E-value=24 Score=22.82 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=12.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023669 208 EVAQRFGNLDFKLKFVEHNIHFLQEVI 234 (279)
Q Consensus 208 ei~~R~~~Ln~KL~~i~e~~~~l~~~l 234 (279)
|+..|.+.|.+|+.-+..-++.+.+.+
T Consensus 13 el~~r~e~LE~Ri~~LE~KLd~L~~~l 39 (43)
T 2pnv_A 13 DLNERSEDFEKRIVTLETKLETLIGSI 39 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444444444443
No 5
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=43.55 E-value=1.8e+02 Score=25.98 Aligned_cols=18 Identities=11% Similarity=0.123 Sum_probs=9.5
Q ss_pred ecCcEEEEeC---ChHHHHHH
Q 023669 50 HYGSAVLFNI---EDHEVENY 67 (279)
Q Consensus 50 ~yGvVVfwn~---~~~e~~~~ 67 (279)
+...+|+.|+ +++|...+
T Consensus 46 ~d~~~vWIdl~~Pt~~E~~~l 66 (339)
T 4ev6_A 46 EDYRLIWIDCYDPKDEELYKL 66 (339)
T ss_dssp SSCSCEEEEEESCCHHHHHHH
T ss_pred cCCCEEEEEeCCCCHHHHHHH
Confidence 4455666665 45554443
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=38.31 E-value=36 Score=22.03 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=21.4
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHH
Q 023669 204 REEYEVAQRFGNLDFKLKFVEHNIHF 229 (279)
Q Consensus 204 ~~~~ei~~R~~~Ln~KL~~i~e~~~~ 229 (279)
.+.=++..|+..|..||+.+++.+..
T Consensus 16 ~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 16 ERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34557889999999999999987764
No 7
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=37.85 E-value=1.9e+02 Score=28.31 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhcCCCCccHHHHHHHHHHHHHHH-HHhHhhccccccchhhhccchhHHHHHHHHHH
Q 023669 128 ALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNL-ADVILKVGLFERSEIAWRDAKYAQIYEYLREE 206 (279)
Q Consensus 128 kL~~~E~~l~~~i~~~~~i~~~L~~~G~~~~~rk~l~k~iG~l~~~r-~~inl~~~lLD~Pe~~We~~~le~lY~~l~~~ 206 (279)
.|...|..+.+.|+++++--+++.+ +++.+...+-.+.... .++. ..-+.+..|..+.+
T Consensus 54 lLdkqErDltkrINELKnqLEdlsK------nsKdseqy~k~~~E~Lr~rq~-------------q~~dNdNtynE~S~- 113 (562)
T 3ghg_A 54 LIDEVNQDFTNRINKLKNSLFEYQK------NNKDSHSLTTNIMEILRGDFS-------------SANNRDNTYNRVSE- 113 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHH------HHHHHHHHHHHHHHTTSSHHH-------------HHHHHHHHHHHTTH-
T ss_pred hHHhhcCcHHHHHHHHHHHHHHHHh------hchhHHHHHHHHHHHHHHHHH-------------hhhccchhHHHHHH-
Confidence 4667888899999998877777765 5665554432222111 1110 11123333333322
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchhHHH
Q 023669 207 YEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRS--DLLEWCI 246 (279)
Q Consensus 207 ~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s--~rLEwiI 246 (279)
||..|+..|+.|++--..++..|+..+.++++ -|||.-|
T Consensus 114 -ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 114 -DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888777888888888876554 5777654
No 8
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=34.07 E-value=2.1e+02 Score=24.01 Aligned_cols=26 Identities=4% Similarity=-0.028 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHh
Q 023669 127 MALDYFVSQVDCLVEEFAGINRAMEK 152 (279)
Q Consensus 127 vkL~~~E~~l~~~i~~~~~i~~~L~~ 152 (279)
+.+..++..++....-++.+-+.+..
T Consensus 137 ll~~lld~ivd~y~~~l~~l~~~id~ 162 (252)
T 3ck6_A 137 LLNQIIEGLNGKIDLYLDTIEETLNE 162 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777777766666666555543
No 9
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=33.22 E-value=79 Score=23.29 Aligned_cols=51 Identities=20% Similarity=0.346 Sum_probs=42.8
Q ss_pred cchhhhcc---chhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023669 186 RSEIAWRD---AKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQN 236 (279)
Q Consensus 186 ~Pe~~We~---~~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~ 236 (279)
.|+-||+. ..-..+++.+.+--.+..+++.++..+..+++..+-|.+...+
T Consensus 17 pse~YWk~lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~ 70 (83)
T 1wlq_A 17 PSSQYWKEVAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEH 70 (83)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46889996 3557899999999999999999999999998888888877655
No 10
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=30.71 E-value=57 Score=23.55 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=27.4
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 023669 207 YEVAQRFGNLDFKLKFVEHNIHFLQEVIQNR 237 (279)
Q Consensus 207 ~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~ 237 (279)
-++.+|+.-|..|+.+..++++-|++.+..+
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Q 40 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADA 40 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999999998754
No 11
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=27.27 E-value=1.1e+02 Score=26.21 Aligned_cols=50 Identities=20% Similarity=0.351 Sum_probs=41.0
Q ss_pred cchhhhcc---chhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023669 186 RSEIAWRD---AKYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQ 235 (279)
Q Consensus 186 ~Pe~~We~---~~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~ 235 (279)
-|+-||+. ..-..||+.+.+--++..+++.++..+..+++..+-|+++..
T Consensus 94 Pse~YWk~lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae 146 (209)
T 2wvr_A 94 PSSQYWKEVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 146 (209)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899996 355789999999999999999999888888887777776554
No 12
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=26.01 E-value=4.1e+02 Score=24.85 Aligned_cols=49 Identities=20% Similarity=0.244 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHhccc--cchhHHH
Q 023669 196 YAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQNRRS--DLLEWCI 246 (279)
Q Consensus 196 le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~~~~s--~rLEwiI 246 (279)
.+..|..+.+. |..|+..|.+|++-=-..+..|+..+.++++ -|||.-|
T Consensus 107 ndn~~~e~s~e--Le~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 107 NDNTFKQINED--LRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555543 4577888888887655577888887766544 5788665
No 13
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=24.24 E-value=1.1e+02 Score=19.62 Aligned_cols=29 Identities=10% Similarity=0.350 Sum_probs=22.6
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023669 207 YEVAQRFGNLDFKLKFVEHNIHFLQEVIQ 235 (279)
Q Consensus 207 ~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~ 235 (279)
=++..|..-|++|++.++.-=.||+..+.
T Consensus 13 k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 35677888888888888888888887664
No 14
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=23.34 E-value=1.9e+02 Score=23.19 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=21.9
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHH
Q 023669 206 EYEVAQRFGNLDFKLKFVEHNIHFL 230 (279)
Q Consensus 206 ~~ei~~R~~~Ln~KL~~i~e~~~~l 230 (279)
|++-+.|++-|-.||++|+.++.-+
T Consensus 111 y~ekK~Rc~yL~~KLsHIK~lI~~Y 135 (140)
T 1xaw_A 111 YKSKKNHCKQLKSKLSHIKKMVGDY 135 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7888999999999999999887654
No 15
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=22.72 E-value=2.3e+02 Score=20.68 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=24.8
Q ss_pred HHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023669 202 YLREEYEVAQRFGNLDFKLKFVEHNIHFLQEVIQ 235 (279)
Q Consensus 202 ~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~~l~ 235 (279)
.+.+.++=.+|.+.|..|-+-+++....+.....
T Consensus 24 NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~ 57 (91)
T 3hd7_A 24 NVDKVLERDQKLSELDDRADALQAGASQFETSAA 57 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778888888888888888777775543
Done!