Query 023669
Match_columns 279
No_of_seqs 126 out of 481
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 10:47:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023669.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023669hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 32.5 55 0.004 28.1 7.5 48 184-232 38-86 (362)
2 d3fapb_ a.24.7.1 (B:) FKBP12-r 22.4 1.1E+02 0.0081 20.9 6.3 50 121-171 11-60 (94)
3 d1m56d_ f.23.8.1 (D:) Bacteria 20.4 38 0.0028 20.3 2.7 18 242-259 23-40 (42)
4 d1ttza_ c.47.1.1 (A:) Hypothet 18.4 34 0.0025 22.5 2.5 24 46-69 49-72 (75)
5 d1qnaa2 d.129.1.1 (A:116-198) 17.0 61 0.0045 21.6 3.7 28 44-71 45-73 (83)
6 d1mp9a1 d.129.1.1 (A:5-96) TAT 15.7 80 0.0059 21.3 4.1 29 44-72 55-84 (92)
7 d1aisa2 d.129.1.1 (A:93-181) T 15.2 86 0.0063 21.1 4.1 31 43-73 53-84 (89)
8 d1aisa1 d.129.1.1 (A:1-92) TAT 14.0 90 0.0066 21.1 4.0 31 43-73 54-85 (92)
9 d1qled_ f.23.8.1 (D:) Bacteria 13.9 52 0.0038 19.7 2.2 18 242-259 24-41 (43)
10 d1orja_ a.24.19.1 (A:) Flagell 13.7 2E+02 0.015 20.0 11.3 95 135-233 24-119 (126)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=32.54 E-value=55 Score=28.08 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=34.7
Q ss_pred cccchhhhccc-hhHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Q 023669 184 FERSEIAWRDA-KYAQIYEYLREEYEVAQRFGNLDFKLKFVEHNIHFLQE 232 (279)
Q Consensus 184 LD~Pe~~We~~-~le~lY~~l~~~~ei~~R~~~Ln~KL~~i~e~~~~l~~ 232 (279)
+-.|++ |++| .+.++-......=.+-..++.+...++-+.++.++..+
T Consensus 38 lsdP~f-W~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~e 86 (362)
T d1gqea_ 38 LEQPDV-WNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVE 86 (362)
T ss_dssp HHSGGG-GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCChh-hhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 457887 8886 66667777776666677778888888777777776554
No 2
>d3fapb_ a.24.7.1 (B:) FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.38 E-value=1.1e+02 Score=20.94 Aligned_cols=50 Identities=22% Similarity=0.264 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCCCCccHHHHHHHHHHHH
Q 023669 121 SVLGQSMALDYFVSQVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKAN 171 (279)
Q Consensus 121 ~aLAQSvkL~~~E~~l~~~i~~~~~i~~~L~~~G~~~~~rk~l~k~iG~l~ 171 (279)
.+|=.+.++-+=|..++++++...++-+.|.+ |--++....-.+..|.-+
T Consensus 11 e~LeeAsr~y~~~~n~~~m~~~L~pLhe~L~k-~PeT~~E~sF~q~fG~~L 60 (94)
T d3fapb_ 11 EGLEEASRLYFGERNVKGMFEVLEPLHAMMER-GPQTLKETSFNQAYGRDL 60 (94)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccCCHHHHHHHHHHHHHHHcc-CCCCHHHHHHHHHHhHHH
Confidence 35566667777788899999999999999988 544666666777777643
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=20.39 E-value=38 Score=20.26 Aligned_cols=18 Identities=6% Similarity=0.394 Sum_probs=14.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 023669 242 LEWCIIFLLTIENVISVY 259 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~l~ 259 (279)
--|..|+.|++-|+++++
T Consensus 23 ~t~~~i~~i~~liflAi~ 40 (42)
T d1m56d_ 23 VTWAAVVIVAALIFLALA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 458888888888888875
No 4
>d1ttza_ c.47.1.1 (A:) Hypothetical protein XCC2852 {Xanthomonas campestris [TaxId: 339]}
Probab=18.36 E-value=34 Score=22.54 Aligned_cols=24 Identities=8% Similarity=0.218 Sum_probs=19.9
Q ss_pred EEEEecCcEEEEeCChHHHHHHHH
Q 023669 46 MVVFHYGSAVLFNIEDHEVENYLH 69 (279)
Q Consensus 46 vfiF~yGvVVfwn~~~~e~~~~L~ 69 (279)
|.....|...+|.+++.+..++|.
T Consensus 49 Vl~~~~~~~l~w~fd~~~l~~~L~ 72 (75)
T d1ttza_ 49 VLRDPMGRELDWPFDAPRLRAWLD 72 (75)
T ss_dssp EEECTTCCEEESCCCHHHHHHHHH
T ss_pred EEEECCeeEEcCccCHHHHHHHHh
Confidence 555678999999999999888775
No 5
>d1qnaa2 d.129.1.1 (A:116-198) TATA-box binding protein (TBP), C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=17.00 E-value=61 Score=21.55 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=20.8
Q ss_pred eEEEEEecCcEEEEeCC-hHHHHHHHHHH
Q 023669 44 RYMVVFHYGSAVLFNIE-DHEVENYLHII 71 (279)
Q Consensus 44 ~~vfiF~yGvVVfwn~~-~~e~~~~L~~l 71 (279)
-.+-+|+.|-||+=|.. +++....++.+
T Consensus 45 ~~~lIF~SGkivitGaks~~~~~~a~~~i 73 (83)
T d1qnaa2 45 IVLLIFVSGKIVITGAKMRDETYKAFENI 73 (83)
T ss_dssp EEEEECTTSEEEEEEESSHHHHHHHHHHH
T ss_pred eEEEEEcCCEEEEECCCCHHHHHHHHHHH
Confidence 47889999999999984 55555544443
No 6
>d1mp9a1 d.129.1.1 (A:5-96) TATA-box binding protein (TBP), C-terminal domain {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=15.73 E-value=80 Score=21.34 Aligned_cols=29 Identities=17% Similarity=0.197 Sum_probs=21.9
Q ss_pred eEEEEEecCcEEEEeC-ChHHHHHHHHHHH
Q 023669 44 RYMVVFHYGSAVLFNI-EDHEVENYLHIIR 72 (279)
Q Consensus 44 ~~vfiF~yGvVVfwn~-~~~e~~~~L~~l~ 72 (279)
-.+-+|+.|-+|+=|. ++++....++.+.
T Consensus 55 ~t~lIF~SGkivitGaks~~~~~~a~~~~~ 84 (92)
T d1mp9a1 55 ITSLIFKSGKMVVTGAKSTDELIKAVKRII 84 (92)
T ss_dssp EEEEECTTSEEEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCEEEEEccCCHHHHHHHHHHHH
Confidence 4688999999999998 6766666554443
No 7
>d1aisa2 d.129.1.1 (A:93-181) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=15.21 E-value=86 Score=21.09 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=23.5
Q ss_pred eeEEEEEecCcEEEEeC-ChHHHHHHHHHHHH
Q 023669 43 CRYMVVFHYGSAVLFNI-EDHEVENYLHIIRR 73 (279)
Q Consensus 43 ~~~vfiF~yGvVVfwn~-~~~e~~~~L~~l~~ 73 (279)
...+-+|+.|-+|+-|. ++++....++.+.+
T Consensus 53 ~~t~lIF~SGKivitGaks~~~~~~a~~~i~~ 84 (89)
T d1aisa2 53 KSVILLFSSGKIVCSGAKSEADAWEAVRKLLR 84 (89)
T ss_dssp TEEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred cEEEEEEcCCEEEEEccCCHHHHHHHHHHHHH
Confidence 35789999999999997 67776666655543
No 8
>d1aisa1 d.129.1.1 (A:1-92) TATA-box binding protein (TBP), C-terminal domain {Archaeon Pyrococcus woesei [TaxId: 2262]}
Probab=13.99 E-value=90 Score=21.09 Aligned_cols=31 Identities=13% Similarity=0.241 Sum_probs=23.5
Q ss_pred eeEEEEEecCcEEEEeC-ChHHHHHHHHHHHH
Q 023669 43 CRYMVVFHYGSAVLFNI-EDHEVENYLHIIRR 73 (279)
Q Consensus 43 ~~~vfiF~yGvVVfwn~-~~~e~~~~L~~l~~ 73 (279)
...+-+|+.|-+|+=|. +.++....++.+.+
T Consensus 54 ~~~~lIF~sGkivitGakS~~~~~~a~~~i~~ 85 (92)
T d1aisa1 54 KVALLIFSSGKLVVTGAKSVQDIERAVAKLAQ 85 (92)
T ss_dssp CCEEEECTTSEEEEEEESSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCEEEEEccCCHHHHHHHHHHHHH
Confidence 45688999999999997 67777666655543
No 9
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=13.85 E-value=52 Score=19.70 Aligned_cols=18 Identities=11% Similarity=0.373 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 023669 242 LEWCIIFLLTIENVISVY 259 (279)
Q Consensus 242 LEwiIIiLI~vEI~l~l~ 259 (279)
--|.-|++|++-|+++++
T Consensus 24 ~t~~~i~~i~~liflAi~ 41 (43)
T d1qled_ 24 ATWVSILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 457888888888888764
No 10
>d1orja_ a.24.19.1 (A:) Flagellar export chaperone FliS {Aquifex aeolicus [TaxId: 63363]}
Probab=13.66 E-value=2e+02 Score=20.04 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHhHhhccccccchhhhccchhHHHHHHHHHHh-chhhHH
Q 023669 135 QVDCLVEEFAGINRAMEKTGTFTMDRTKLIQLVGKANSNLADVILKVGLFERSEIAWRDAKYAQIYEYLREEY-EVAQRF 213 (279)
Q Consensus 135 ~l~~~i~~~~~i~~~L~~~G~~~~~rk~l~k~iG~l~~~r~~inl~~~lLD~Pe~~We~~~le~lY~~l~~~~-ei~~R~ 213 (279)
..+.++..+..--..+.+ |...-.+.+..+.+++...+...+....+.=.-+|. ...|..+|.-+.+.+ +.+...
T Consensus 24 Lyd~~i~~l~~a~~a~~~-~d~~~~~~~~~~~l~ka~~Ii~~L~~~Ld~e~Ggei---A~nL~~lY~~~~~~L~~a~~~~ 99 (126)
T d1orja_ 24 LYDKAIECLERAIEIYDQ-VNELEKRKEFVENIDRVYDIISALKSFLDHEKGKEI---AKNLDTIYTIILNTLVKVDKTK 99 (126)
T ss_dssp HHHHHHHHHHHHHHTGGG-TTSHHHHHHHHHHHHHHHHHHHHHHHTCCTTTSHHH---HHHHHHHHHHHHHHHHCTTCCH
T ss_pred HHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHH---HHHHHHHHHHHHHHHHHHhCCH
Confidence 344444444433334444 454444455556677777666666655543222343 367889999887765 222233
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023669 214 GNLDFKLKFVEHNIHFLQEV 233 (279)
Q Consensus 214 ~~Ln~KL~~i~e~~~~l~~~ 233 (279)
+.+.+=+.++.++.+...+.
T Consensus 100 ~~i~e~~~il~~l~eaW~~i 119 (126)
T d1orja_ 100 EELQKILEILKDLREAWEEV 119 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
Done!