Query 023670
Match_columns 279
No_of_seqs 288 out of 2168
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023670.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023670hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3049 Succinate dehydrogenas 100.0 2.6E-70 5.6E-75 467.9 13.0 237 41-277 40-279 (288)
2 PLN00129 succinate dehydrogena 100.0 3.5E-68 7.5E-73 481.6 21.2 272 1-276 1-273 (276)
3 COG0479 FrdB Succinate dehydro 100.0 9.4E-68 2E-72 466.4 16.7 228 47-279 2-230 (234)
4 PRK12575 succinate dehydrogena 100.0 1E-63 2.2E-68 445.2 19.1 231 45-278 2-232 (235)
5 PRK13552 frdB fumarate reducta 100.0 1E-63 2.3E-68 446.6 19.3 232 45-278 2-237 (239)
6 PRK08640 sdhB succinate dehydr 100.0 8.7E-62 1.9E-66 436.5 18.9 230 45-278 3-240 (249)
7 PRK12385 fumarate reductase ir 100.0 1.7E-59 3.8E-64 420.7 16.9 230 46-278 5-234 (244)
8 PRK12386 fumarate reductase ir 100.0 1.5E-58 3.3E-63 414.8 19.0 224 46-278 3-232 (251)
9 PRK12577 succinate dehydrogena 100.0 5.2E-58 1.1E-62 427.6 20.7 227 47-278 2-240 (329)
10 PRK05950 sdhB succinate dehydr 100.0 4.2E-58 9E-63 409.5 18.0 228 49-279 1-230 (232)
11 PRK12576 succinate dehydrogena 100.0 1.1E-56 2.3E-61 409.7 20.1 228 43-276 4-235 (279)
12 TIGR00384 dhsB succinate dehyd 100.0 1.2E-55 2.6E-60 390.7 15.1 219 52-273 1-220 (220)
13 PRK07570 succinate dehydrogena 100.0 1.5E-53 3.2E-58 382.8 16.0 222 47-277 2-241 (250)
14 PRK06259 succinate dehydrogena 100.0 9.2E-44 2E-48 347.6 19.4 214 47-278 3-217 (486)
15 PF13085 Fer2_3: 2Fe-2S iron-s 100.0 1.7E-38 3.7E-43 251.0 8.8 105 49-154 1-110 (110)
16 COG3383 Uncharacterized anaero 99.8 7E-23 1.5E-27 202.0 -1.7 178 70-266 15-211 (978)
17 PRK08493 NADH dehydrogenase su 99.8 1.9E-21 4.2E-26 199.1 4.3 132 70-206 11-157 (819)
18 PTZ00305 NADH:ubiquinone oxido 99.8 7.8E-22 1.7E-26 178.5 0.5 134 70-207 78-229 (297)
19 PRK09130 NADH dehydrogenase su 99.8 1.4E-20 3.1E-25 190.9 1.0 175 69-264 10-202 (687)
20 COG1034 NuoG NADH dehydrogenas 99.8 2.3E-20 5E-25 187.2 0.7 174 69-264 10-201 (693)
21 TIGR01973 NuoG NADH-quinone ox 99.8 3.6E-20 7.8E-25 185.9 -0.3 176 68-264 6-199 (603)
22 PRK07860 NADH dehydrogenase su 99.8 1.5E-19 3.3E-24 186.4 1.3 185 46-264 3-207 (797)
23 PRK07569 bidirectional hydroge 99.7 1.7E-19 3.8E-24 161.1 0.4 177 70-263 13-206 (234)
24 PRK09129 NADH dehydrogenase su 99.7 2.7E-19 5.9E-24 184.2 0.7 175 70-265 11-202 (776)
25 PRK08166 NADH dehydrogenase su 99.7 1.2E-17 2.6E-22 173.5 0.5 173 70-264 11-206 (847)
26 PRK11274 glcF glycolate oxidas 99.4 1.6E-13 3.4E-18 131.6 7.0 95 177-278 10-104 (407)
27 COG1150 HdrC Heterodisulfide r 99.3 1.4E-12 3E-17 111.8 5.6 78 188-278 37-114 (195)
28 TIGR03290 CoB_CoM_SS_C CoB--Co 99.3 5.6E-12 1.2E-16 104.6 6.2 76 190-278 2-77 (144)
29 COG1139 Uncharacterized conser 99.2 1.1E-11 2.3E-16 117.4 4.2 82 185-278 303-389 (459)
30 TIGR00273 iron-sulfur cluster- 99.2 2.4E-11 5.3E-16 117.4 6.6 81 186-278 289-374 (432)
31 TIGR03193 4hydroxCoAred 4-hydr 99.2 4.2E-11 9.1E-16 99.4 6.7 86 66-156 9-99 (148)
32 PRK11433 aldehyde oxidoreducta 99.2 1.4E-10 3.1E-15 101.7 9.5 86 66-156 59-149 (217)
33 PF13510 Fer2_4: 2Fe-2S iron-s 99.1 2.9E-11 6.2E-16 91.1 3.7 58 66-127 11-74 (82)
34 PRK11168 glpC sn-glycerol-3-ph 99.1 4.1E-11 8.8E-16 114.4 5.8 80 188-278 5-85 (396)
35 PRK09908 xanthine dehydrogenas 99.1 1.9E-10 4.1E-15 96.5 8.1 85 66-156 16-105 (159)
36 COG2080 CoxS Aerobic-type carb 99.0 3.4E-10 7.3E-15 94.3 6.4 86 66-156 11-102 (156)
37 TIGR03379 glycerol3P_GlpC glyc 99.0 1.8E-10 3.9E-15 110.2 4.9 78 188-278 3-83 (397)
38 PRK12814 putative NADPH-depend 98.9 1E-09 2.2E-14 111.6 6.5 56 70-127 13-71 (652)
39 COG0247 GlpC Fe-S oxidoreducta 98.9 7.8E-10 1.7E-14 104.9 4.9 84 187-278 6-89 (388)
40 TIGR03198 pucE xanthine dehydr 98.9 1.7E-09 3.7E-14 90.3 6.0 86 66-156 11-100 (151)
41 PF13183 Fer4_8: 4Fe-4S diclus 98.9 5.3E-10 1.1E-14 77.8 2.4 57 188-263 1-57 (57)
42 PF13534 Fer4_17: 4Fe-4S diclu 98.9 5.2E-10 1.1E-14 79.0 1.0 61 191-264 1-61 (61)
43 PRK15055 anaerobic sulfite red 98.7 6.4E-09 1.4E-13 97.7 3.2 36 243-278 303-338 (344)
44 KOG2282 NADH-ubiquinone oxidor 98.6 1.1E-08 2.4E-13 98.5 0.7 58 68-127 40-100 (708)
45 TIGR01945 rnfC electron transp 98.6 5.7E-08 1.2E-12 94.4 5.0 75 187-279 360-434 (435)
46 PRK09800 putative hypoxanthine 98.5 1E-07 2.3E-12 100.4 5.6 85 66-156 10-100 (956)
47 TIGR03313 Se_sel_red_Mo probab 98.5 1.3E-07 2.7E-12 99.8 5.6 85 66-156 6-96 (951)
48 cd00207 fer2 2Fe-2S iron-sulfu 98.5 2.2E-07 4.8E-12 69.2 5.1 53 67-126 9-79 (84)
49 PRK00941 acetyl-CoA decarbonyl 98.5 1.7E-07 3.7E-12 95.6 5.5 76 184-278 398-473 (781)
50 TIGR02910 sulfite_red_A sulfit 98.4 1.7E-07 3.7E-12 87.7 4.3 89 188-277 218-331 (334)
51 PRK05035 electron transport co 98.4 1.7E-07 3.6E-12 95.7 3.9 72 188-277 368-439 (695)
52 cd01916 ACS_1 Acetyl-CoA synth 98.4 3.3E-07 7.2E-12 93.4 5.9 76 184-278 359-434 (731)
53 TIGR02963 xanthine_xdhA xanthi 98.4 4.5E-07 9.8E-12 88.8 6.0 86 66-156 8-109 (467)
54 TIGR00314 cdhA CO dehydrogenas 98.4 3.8E-07 8.3E-12 93.0 5.5 75 184-277 393-467 (784)
55 PRK05352 Na(+)-translocating N 98.3 4E-07 8.7E-12 88.6 4.5 72 189-278 373-446 (448)
56 TIGR03311 Se_dep_Molyb_1 selen 98.3 6.1E-07 1.3E-11 93.8 5.7 83 69-156 9-95 (848)
57 PF00111 Fer2: 2Fe-2S iron-sul 98.3 1.4E-06 3E-11 64.3 5.3 42 66-113 6-48 (78)
58 COG1143 NuoI Formate hydrogenl 98.3 8E-08 1.7E-12 82.0 -2.2 59 187-263 52-111 (172)
59 CHL00134 petF ferredoxin; Vali 98.2 4.7E-06 1E-10 64.9 7.5 39 67-112 16-54 (99)
60 TIGR02008 fdx_plant ferredoxin 98.2 6.1E-06 1.3E-10 64.0 7.5 38 68-112 15-52 (97)
61 COG4656 RnfC Predicted NADH:ub 98.2 1.4E-06 3.1E-11 84.7 4.5 69 191-277 366-434 (529)
62 TIGR02484 CitB CitB domain pro 98.2 1.8E-06 4E-11 81.5 4.8 71 185-278 9-85 (372)
63 TIGR01936 nqrA NADH:ubiquinone 98.2 2.4E-06 5.2E-11 83.2 5.3 71 189-277 372-444 (447)
64 PF12838 Fer4_7: 4Fe-4S diclus 98.1 1.8E-07 4E-12 63.9 -1.9 52 191-263 1-52 (52)
65 PF13746 Fer4_18: 4Fe-4S diclu 98.1 2.7E-07 5.8E-12 67.2 -1.2 27 239-265 42-68 (69)
66 PF13187 Fer4_9: 4Fe-4S diclus 98.1 2.6E-07 5.7E-12 63.6 -1.5 54 191-263 1-54 (55)
67 PF13237 Fer4_10: 4Fe-4S diclu 98.1 6.6E-07 1.4E-11 61.1 0.4 50 186-260 3-52 (52)
68 PRK10713 2Fe-2S ferredoxin Yfa 98.0 9.9E-06 2.1E-10 61.1 5.4 39 70-114 13-52 (84)
69 TIGR02007 fdx_isc ferredoxin, 98.0 1.9E-05 4.2E-10 62.6 7.0 51 47-112 3-54 (110)
70 PLN00192 aldehyde oxidase 98.0 8.3E-06 1.8E-10 89.0 5.8 86 66-156 13-115 (1344)
71 PLN02593 adrenodoxin-like ferr 98.0 2.6E-05 5.7E-10 62.6 7.3 40 66-112 11-51 (117)
72 KOG3256 NADH:ubiquinone oxidor 98.0 9.9E-07 2.1E-11 73.9 -1.2 100 141-263 66-166 (212)
73 TIGR02969 mam_aldehyde_ox alde 97.9 1.3E-05 2.8E-10 87.5 5.2 83 69-156 14-112 (1330)
74 PF14697 Fer4_21: 4Fe-4S diclu 97.9 2.2E-06 4.8E-11 60.5 -0.4 52 188-263 4-56 (59)
75 PLN03136 Ferredoxin; Provision 97.9 0.00011 2.3E-09 61.4 9.2 37 69-112 67-103 (148)
76 PRK15033 tricarballylate utili 97.9 1.5E-05 3.2E-10 75.8 4.6 73 183-278 26-104 (389)
77 TIGR00403 ndhI NADH-plastoquin 97.9 3E-06 6.4E-11 73.2 -0.2 61 186-263 58-118 (183)
78 COG1152 CdhA CO dehydrogenase/ 97.7 3.7E-05 8E-10 75.7 5.0 73 185-276 395-467 (772)
79 COG1453 Predicted oxidoreducta 97.7 0.0001 2.2E-09 69.5 7.3 77 191-277 294-381 (391)
80 PTZ00038 ferredoxin; Provision 97.7 7.7E-05 1.7E-09 64.7 5.9 36 70-112 109-144 (191)
81 PTZ00490 Ferredoxin superfamil 97.6 0.0002 4.2E-09 59.5 7.5 53 47-113 35-88 (143)
82 COG0633 Fdx Ferredoxin [Energy 97.6 0.0001 2.2E-09 57.7 5.4 38 69-113 16-53 (102)
83 PRK13984 putative oxidoreducta 97.6 5.2E-05 1.1E-09 76.5 4.3 32 245-276 183-214 (604)
84 PRK05888 NADH dehydrogenase su 97.5 2.2E-05 4.8E-10 66.4 0.3 59 187-263 55-113 (164)
85 CHL00014 ndhI NADH dehydrogena 97.5 2.4E-05 5.3E-10 66.5 0.2 60 187-263 56-115 (167)
86 PRK14028 pyruvate ferredoxin o 97.5 1.9E-05 4E-10 73.5 -0.6 63 186-263 243-305 (312)
87 CHL00065 psaC photosystem I su 97.5 2.2E-05 4.9E-10 58.5 -0.3 56 188-263 7-62 (81)
88 TIGR02160 PA_CoA_Oxy5 phenylac 97.4 0.00058 1.3E-08 64.3 8.8 38 70-114 277-315 (352)
89 PLN02906 xanthine dehydrogenas 97.4 0.00012 2.7E-09 79.9 4.2 75 77-156 2-92 (1319)
90 PRK02651 photosystem I subunit 97.4 4.1E-05 8.8E-10 57.0 0.1 56 188-263 7-62 (81)
91 TIGR02936 fdxN_nitrog ferredox 97.4 1.9E-05 4.2E-10 59.9 -1.7 70 186-263 17-86 (91)
92 PRK05713 hypothetical protein; 97.4 0.00027 5.9E-09 65.6 5.5 57 68-134 9-83 (312)
93 TIGR03048 PS_I_psaC photosyste 97.3 4.6E-05 1E-09 56.7 -0.2 57 187-263 5-61 (80)
94 PRK08222 hydrogenase 4 subunit 97.3 3.7E-05 8.1E-10 66.3 -0.8 55 187-263 35-89 (181)
95 PRK08348 NADH-plastoquinone ox 97.3 6.1E-05 1.3E-09 60.5 0.4 52 186-263 38-89 (120)
96 PLN00071 photosystem I subunit 97.3 4.8E-05 1E-09 56.7 -0.4 56 188-263 7-62 (81)
97 PRK11872 antC anthranilate dio 97.3 0.00042 9.1E-09 65.2 5.7 52 67-125 14-85 (340)
98 TIGR01971 NuoI NADH-quinone ox 97.3 3.5E-05 7.6E-10 61.8 -1.4 58 188-263 41-98 (122)
99 PRK07609 CDP-6-deoxy-delta-3,4 97.2 0.00041 8.8E-09 65.0 5.3 49 70-125 14-82 (339)
100 PRK06273 ferredoxin; Provision 97.2 3.5E-05 7.5E-10 65.5 -1.9 62 187-263 46-107 (165)
101 TIGR02176 pyruv_ox_red pyruvat 97.2 6E-05 1.3E-09 81.4 -0.6 71 187-262 680-754 (1165)
102 PRK09626 oorD 2-oxoglutarate-a 97.2 7E-05 1.5E-09 58.6 -0.2 60 184-263 10-69 (103)
103 PRK05113 electron transport co 97.2 0.00018 4E-09 62.5 1.8 52 185-263 109-160 (191)
104 COG1145 NapF Ferredoxin [Energ 97.2 0.00022 4.8E-09 54.2 2.0 54 187-263 26-79 (99)
105 PRK09477 napH quinol dehydroge 97.1 0.00024 5.1E-09 65.0 2.3 54 187-263 205-258 (271)
106 TIGR02163 napH_ ferredoxin-typ 97.1 0.00021 4.6E-09 64.8 2.0 52 188-263 199-250 (255)
107 PRK09625 porD pyruvate flavodo 97.1 0.00016 3.5E-09 59.2 0.6 51 186-263 55-105 (133)
108 PF13484 Fer4_16: 4Fe-4S doubl 97.0 0.00014 3.1E-09 51.9 -0.1 64 191-262 1-67 (67)
109 TIGR02512 Fe_only_hydrog hydro 97.0 0.00011 2.5E-09 70.1 -0.9 63 187-264 4-67 (374)
110 PF12798 Fer4_3: 4Fe-4S bindin 97.0 0.00028 6.2E-09 36.1 0.7 15 249-263 1-15 (15)
111 TIGR02494 PFLE_PFLC glycyl-rad 97.0 0.00042 9.2E-09 63.6 2.3 67 185-274 43-117 (295)
112 PRK06991 ferredoxin; Provision 96.9 0.00027 5.9E-09 64.6 0.6 49 187-262 82-130 (270)
113 TIGR01941 nqrF NADH:ubiquinone 96.9 0.0014 3.1E-08 63.1 5.6 52 68-126 42-114 (405)
114 PRK10684 HCP oxidoreductase, N 96.9 0.0011 2.4E-08 62.0 4.3 37 71-114 261-298 (332)
115 PRK12387 formate hydrogenlyase 96.8 0.0002 4.2E-09 61.6 -0.8 56 186-263 34-89 (180)
116 PRK09624 porD pyuvate ferredox 96.8 0.00028 6E-09 55.5 -0.2 50 187-263 48-97 (105)
117 PRK08318 dihydropyrimidine deh 96.8 0.00038 8.2E-09 67.4 0.7 55 187-263 339-394 (420)
118 PRK05464 Na(+)-translocating N 96.8 0.002 4.3E-08 62.2 5.6 51 69-126 47-118 (409)
119 COG1146 Ferredoxin [Energy pro 96.8 0.00053 1.1E-08 49.4 1.1 51 188-262 6-56 (68)
120 TIGR01944 rnfB electron transp 96.7 0.00047 1E-08 58.5 0.7 52 185-263 108-159 (165)
121 PRK09623 vorD 2-ketoisovalerat 96.7 0.00046 9.9E-09 54.2 0.6 51 186-263 47-97 (105)
122 PRK08764 ferredoxin; Provision 96.7 0.00049 1.1E-08 56.5 0.7 48 189-263 84-131 (135)
123 TIGR00402 napF ferredoxin-type 96.7 0.00044 9.6E-09 53.9 0.4 51 188-263 32-82 (101)
124 PRK09326 F420H2 dehydrogenase 96.7 0.00024 5.2E-09 67.0 -1.5 61 186-262 8-68 (341)
125 PRK10194 ferredoxin-type prote 96.6 0.00043 9.3E-09 58.5 -0.5 18 188-205 32-49 (163)
126 TIGR02179 PorD_KorD 2-oxoacid: 96.6 0.00051 1.1E-08 50.5 -0.2 51 186-263 21-71 (78)
127 PF12797 Fer4_2: 4Fe-4S bindin 96.6 0.00056 1.2E-08 38.5 -0.1 19 186-204 4-22 (22)
128 TIGR02912 sulfite_red_C sulfit 96.5 0.00043 9.4E-09 64.5 -1.2 52 187-263 166-217 (314)
129 PRK09898 hypothetical protein; 96.5 0.0016 3.4E-08 57.3 2.4 47 187-263 151-197 (208)
130 PRK10882 hydrogenase 2 protein 96.4 0.0016 3.4E-08 61.2 2.1 32 246-277 171-219 (328)
131 PRK12778 putative bifunctional 96.4 0.0046 9.9E-08 64.2 5.4 45 79-123 196-240 (752)
132 COG0437 HybA Fe-S-cluster-cont 96.4 0.0011 2.4E-08 58.0 0.7 59 186-274 96-163 (203)
133 PRK12775 putative trifunctiona 96.4 0.0053 1.1E-07 65.8 5.9 33 93-125 210-242 (1006)
134 PF12837 Fer4_6: 4Fe-4S bindin 96.3 0.0012 2.6E-08 38.1 0.3 18 246-263 6-23 (24)
135 COG1149 MinD superfamily P-loo 96.3 0.00087 1.9E-08 61.0 -0.6 48 188-262 67-114 (284)
136 COG2768 Uncharacterized Fe-S c 96.2 0.0017 3.7E-08 59.8 0.7 57 188-274 191-247 (354)
137 PF12800 Fer4_4: 4Fe-4S bindin 96.1 0.0036 7.9E-08 33.0 1.4 15 190-204 2-16 (17)
138 TIGR03224 benzo_boxA benzoyl-C 96.1 0.0024 5.1E-08 61.8 1.2 50 186-263 6-55 (411)
139 PF00037 Fer4: 4Fe-4S binding 96.1 0.0027 5.9E-08 36.5 1.0 18 246-263 5-22 (24)
140 TIGR02060 aprB adenosine phosp 96.0 0.0026 5.6E-08 52.2 1.1 52 187-263 5-61 (132)
141 COG4630 XdhA Xanthine dehydrog 95.9 0.0067 1.5E-07 57.5 3.5 79 71-154 22-115 (493)
142 PF12837 Fer4_6: 4Fe-4S bindin 95.9 0.0013 2.9E-08 37.9 -0.7 18 187-204 4-21 (24)
143 TIGR03149 cyt_nit_nrfC cytochr 95.7 0.0058 1.2E-07 54.4 1.9 47 187-263 122-178 (225)
144 TIGR02745 ccoG_rdxA_fixG cytoc 95.6 0.0052 1.1E-07 59.9 1.4 40 189-261 230-269 (434)
145 TIGR00397 mauM_napG MauM/NapG 95.6 0.0021 4.4E-08 56.9 -1.4 56 189-263 52-109 (213)
146 PF12800 Fer4_4: 4Fe-4S bindin 95.6 0.005 1.1E-07 32.5 0.7 16 247-262 2-17 (17)
147 TIGR02700 flavo_MJ0208 archaeo 95.6 0.0026 5.6E-08 56.9 -0.7 48 188-263 146-193 (234)
148 COG1144 Pyruvate:ferredoxin ox 95.4 0.003 6.6E-08 48.0 -0.9 51 185-261 30-80 (91)
149 PF00037 Fer4: 4Fe-4S binding 95.2 0.0042 9.1E-08 35.7 -0.4 18 188-205 4-21 (24)
150 TIGR03336 IOR_alpha indolepyru 95.2 0.012 2.6E-07 59.6 2.5 46 187-263 547-594 (595)
151 TIGR00276 iron-sulfur cluster 95.2 0.013 2.7E-07 54.1 2.4 68 189-264 158-226 (282)
152 TIGR03287 methan_mark_16 putat 95.1 0.0086 1.9E-07 57.4 1.0 47 186-263 298-346 (391)
153 TIGR01582 FDH-beta formate deh 95.0 0.011 2.5E-07 54.4 1.7 31 246-276 150-193 (283)
154 KOG0430 Xanthine dehydrogenase 94.9 0.047 1E-06 58.2 5.9 69 66-138 10-89 (1257)
155 TIGR01660 narH nitrate reducta 94.9 0.0089 1.9E-07 58.2 0.6 18 188-205 179-198 (492)
156 PRK10194 ferredoxin-type prote 94.8 0.0056 1.2E-07 51.6 -0.8 19 188-206 64-82 (163)
157 TIGR03478 DMSO_red_II_bet DMSO 94.8 0.0076 1.6E-07 56.2 -0.0 18 246-263 188-214 (321)
158 TIGR00397 mauM_napG MauM/NapG 94.7 0.0071 1.5E-07 53.5 -0.6 17 246-262 174-190 (213)
159 PF12798 Fer4_3: 4Fe-4S bindin 94.6 0.007 1.5E-07 30.9 -0.4 13 192-204 1-13 (15)
160 PRK10330 formate dehydrogenase 94.6 0.0038 8.1E-08 53.6 -2.4 19 187-205 84-102 (181)
161 TIGR03478 DMSO_red_II_bet DMSO 94.6 0.012 2.7E-07 54.8 0.8 54 185-264 124-179 (321)
162 TIGR03149 cyt_nit_nrfC cytochr 94.5 0.016 3.6E-07 51.5 1.3 52 187-264 89-142 (225)
163 PRK14993 tetrathionate reducta 94.5 0.009 1.9E-07 53.9 -0.5 47 187-263 127-182 (244)
164 PRK09476 napG quinol dehydroge 94.4 0.011 2.3E-07 53.8 -0.0 17 189-205 58-74 (254)
165 PRK13984 putative oxidoreducta 94.4 0.011 2.4E-07 59.8 -0.0 61 186-263 41-102 (604)
166 PRK09853 putative selenate red 94.4 0.012 2.6E-07 62.8 0.1 57 187-265 883-944 (1019)
167 PRK12771 putative glutamate sy 94.4 0.015 3.2E-07 58.4 0.8 18 246-263 540-557 (564)
168 PRK13795 hypothetical protein; 94.3 0.0087 1.9E-07 61.1 -1.0 51 187-263 578-628 (636)
169 PRK00054 dihydroorotate dehydr 94.3 0.021 4.6E-07 51.1 1.6 44 79-122 196-239 (250)
170 PRK07118 ferredoxin; Validated 94.2 0.017 3.6E-07 53.2 0.7 48 189-264 212-259 (280)
171 PRK12769 putative oxidoreducta 94.2 0.0057 1.2E-07 62.5 -2.7 21 186-206 6-26 (654)
172 TIGR02951 DMSO_dmsB DMSO reduc 94.1 0.018 4E-07 48.3 0.8 19 246-264 121-148 (161)
173 PRK10330 formate dehydrogenase 94.1 0.0045 9.7E-08 53.1 -3.0 20 186-205 6-25 (181)
174 PF13247 Fer4_11: 4Fe-4S diclu 94.1 0.0081 1.8E-07 46.7 -1.3 21 185-205 35-55 (98)
175 TIGR01582 FDH-beta formate deh 94.1 0.014 3.1E-07 53.8 0.1 52 187-264 88-141 (283)
176 TIGR03294 FrhG coenzyme F420 h 94.1 0.012 2.7E-07 52.5 -0.4 54 186-267 170-223 (228)
177 KOG3309 Ferredoxin [Energy pro 94.0 0.22 4.8E-06 41.6 6.9 52 50-114 44-96 (159)
178 TIGR02951 DMSO_dmsB DMSO reduc 94.0 0.0021 4.6E-08 54.1 -5.2 21 185-205 4-24 (161)
179 PRK07118 ferredoxin; Validated 94.0 0.011 2.5E-07 54.3 -0.8 46 190-263 139-184 (280)
180 PF12797 Fer4_2: 4Fe-4S bindin 94.0 0.02 4.4E-07 32.2 0.5 17 245-261 6-22 (22)
181 COG1148 HdrA Heterodisulfide r 94.0 0.019 4.2E-07 56.3 0.6 63 190-263 224-287 (622)
182 PRK10882 hydrogenase 2 protein 93.9 0.017 3.6E-07 54.4 0.2 52 187-264 107-160 (328)
183 PRK09476 napG quinol dehydroge 93.8 0.0098 2.1E-07 54.0 -1.6 17 246-262 183-199 (254)
184 TIGR01372 soxA sarcosine oxida 93.6 0.13 2.8E-06 55.2 6.2 66 70-139 22-97 (985)
185 TIGR03315 Se_ygfK putative sel 93.6 0.022 4.8E-07 60.9 0.3 17 248-264 922-938 (1012)
186 TIGR02486 RDH reductive dehalo 93.3 0.028 6.1E-07 52.6 0.4 27 251-277 268-294 (314)
187 TIGR01660 narH nitrate reducta 93.2 0.026 5.6E-07 55.0 0.0 48 187-264 211-267 (492)
188 PF13187 Fer4_9: 4Fe-4S diclus 93.1 0.043 9.3E-07 37.2 1.0 17 248-264 1-17 (55)
189 COG2878 Predicted NADH:ubiquin 93.0 0.037 7.9E-07 47.6 0.6 51 186-263 111-161 (198)
190 COG1148 HdrA Heterodisulfide r 92.9 0.04 8.7E-07 54.2 0.9 45 188-263 559-603 (622)
191 COG3894 Uncharacterized metal- 92.8 0.1 2.2E-06 51.4 3.5 46 73-125 15-79 (614)
192 cd07030 RNAP_D D subunit of Ar 92.7 0.036 7.8E-07 50.3 0.4 46 190-262 169-214 (259)
193 PRK09898 hypothetical protein; 92.6 0.054 1.2E-06 47.5 1.2 51 188-264 119-171 (208)
194 PRK12809 putative oxidoreducta 92.4 0.013 2.8E-07 59.8 -3.3 21 185-205 5-25 (639)
195 PRK08364 sulfur carrier protei 92.3 0.82 1.8E-05 33.0 7.0 45 66-127 14-58 (70)
196 PRK12769 putative oxidoreducta 92.3 0.042 9.1E-07 56.2 0.3 55 186-263 81-141 (654)
197 COG4231 Indolepyruvate ferredo 92.3 0.029 6.3E-07 56.4 -0.9 51 185-263 572-624 (640)
198 PF13746 Fer4_18: 4Fe-4S diclu 92.3 0.056 1.2E-06 39.2 0.8 19 187-205 47-65 (69)
199 COG2221 DsrA Dissimilatory sul 92.1 0.022 4.7E-07 52.9 -1.9 50 187-264 169-218 (317)
200 PRK12809 putative oxidoreducta 91.9 0.11 2.3E-06 53.2 2.5 30 245-274 206-238 (639)
201 PRK00783 DNA-directed RNA poly 91.8 0.052 1.1E-06 49.3 0.2 47 189-262 168-214 (263)
202 TIGR02066 dsrB sulfite reducta 91.7 0.058 1.3E-06 51.1 0.4 49 191-263 182-230 (341)
203 PRK01777 hypothetical protein; 91.6 1.7 3.7E-05 33.5 8.4 71 47-134 3-74 (95)
204 PRK05352 Na(+)-translocating N 91.5 0.12 2.7E-06 50.6 2.5 30 245-274 372-401 (448)
205 PRK14993 tetrathionate reducta 91.4 0.058 1.3E-06 48.7 0.1 50 188-264 96-147 (244)
206 TIGR01936 nqrA NADH:ubiquinone 91.0 0.15 3.2E-06 50.0 2.5 30 245-274 371-400 (447)
207 PRK12387 formate hydrogenlyase 91.0 0.28 6.2E-06 42.0 3.9 19 245-263 151-169 (180)
208 PF13484 Fer4_16: 4Fe-4S doubl 90.9 0.066 1.4E-06 37.9 -0.0 16 248-263 1-16 (67)
209 cd06219 DHOD_e_trans_like1 FAD 90.9 0.2 4.2E-06 44.8 3.0 44 79-122 195-238 (248)
210 PF13237 Fer4_10: 4Fe-4S diclu 90.9 0.048 1E-06 36.7 -0.8 16 188-203 37-52 (52)
211 COG1143 NuoI Formate hydrogenl 90.8 0.086 1.9E-06 45.1 0.5 21 187-207 92-112 (172)
212 cd06192 DHOD_e_trans_like FAD/ 90.5 0.2 4.4E-06 44.4 2.7 30 93-122 209-238 (243)
213 TIGR02745 ccoG_rdxA_fixG cytoc 90.4 0.098 2.1E-06 51.1 0.6 20 246-265 230-249 (434)
214 PF13247 Fer4_11: 4Fe-4S diclu 90.4 0.067 1.4E-06 41.6 -0.5 51 188-264 5-57 (98)
215 PRK05802 hypothetical protein; 90.2 0.23 5E-06 46.5 2.9 33 93-125 285-318 (320)
216 KOG3256 NADH:ubiquinone oxidor 89.9 0.1 2.2E-06 44.2 0.2 20 187-206 147-166 (212)
217 PRK12814 putative NADPH-depend 89.8 0.068 1.5E-06 54.8 -1.1 25 184-208 610-634 (652)
218 COG3383 Uncharacterized anaero 89.8 0.13 2.8E-06 52.9 1.0 27 188-214 190-216 (978)
219 PF14697 Fer4_21: 4Fe-4S diclu 89.7 0.17 3.7E-06 35.5 1.2 16 189-204 38-53 (59)
220 PF12838 Fer4_7: 4Fe-4S diclus 89.4 0.078 1.7E-06 35.7 -0.7 16 248-263 1-16 (52)
221 COG0437 HybA Fe-S-cluster-cont 89.1 0.23 5E-06 43.6 1.8 53 186-264 63-117 (203)
222 cd06218 DHOD_e_trans FAD/NAD b 89.0 0.3 6.5E-06 43.7 2.5 42 79-122 195-241 (246)
223 COG2871 NqrF Na+-transporting 88.8 0.67 1.5E-05 42.9 4.7 65 45-126 34-119 (410)
224 PRK06222 ferredoxin-NADP(+) re 88.7 0.36 7.8E-06 44.1 2.9 43 79-121 196-238 (281)
225 COG1600 Uncharacterized Fe-S p 88.4 0.4 8.7E-06 45.3 3.0 65 190-262 185-249 (337)
226 PF13534 Fer4_17: 4Fe-4S diclu 88.3 0.056 1.2E-06 37.5 -2.1 18 248-265 1-18 (61)
227 PF10418 DHODB_Fe-S_bind: Iron 87.4 0.39 8.5E-06 31.1 1.7 24 98-121 4-29 (40)
228 PF13183 Fer4_8: 4Fe-4S diclus 87.0 0.029 6.2E-07 38.4 -4.2 21 246-266 2-22 (57)
229 cd06220 DHOD_e_trans_like2 FAD 86.7 0.42 9E-06 42.2 2.0 40 78-121 181-222 (233)
230 PRK08345 cytochrome-c3 hydroge 86.2 0.34 7.3E-06 44.5 1.2 43 79-121 227-272 (289)
231 COG1150 HdrC Heterodisulfide r 85.5 0.4 8.6E-06 41.7 1.2 31 246-276 38-72 (195)
232 PLN00071 photosystem I subunit 85.0 0.28 6.1E-06 36.1 0.1 27 189-215 45-71 (81)
233 TIGR03048 PS_I_psaC photosyste 84.9 0.41 8.8E-06 35.3 0.9 19 245-263 6-24 (80)
234 COG1145 NapF Ferredoxin [Energ 84.8 0.24 5.2E-06 37.2 -0.4 18 245-262 27-44 (99)
235 PRK05659 sulfur carrier protei 84.7 3.4 7.4E-05 29.0 5.6 41 71-127 11-54 (66)
236 PRK05035 electron transport co 84.4 0.51 1.1E-05 48.8 1.6 29 245-273 368-396 (695)
237 PF14691 Fer4_20: Dihydroprymi 83.9 0.72 1.6E-05 36.6 2.0 29 246-274 21-51 (111)
238 COG1152 CdhA CO dehydrogenase/ 83.8 0.49 1.1E-05 47.5 1.2 28 246-273 399-426 (772)
239 CHL00065 psaC photosystem I su 83.6 0.47 1E-05 35.0 0.8 18 246-263 8-25 (81)
240 COG1941 FrhG Coenzyme F420-red 83.4 0.5 1.1E-05 42.4 1.0 60 184-274 184-243 (247)
241 PRK08348 NADH-plastoquinone ox 83.4 0.48 1E-05 37.7 0.8 19 245-263 40-58 (120)
242 PRK09626 oorD 2-oxoglutarate-a 83.2 0.41 9E-06 37.1 0.3 19 245-263 14-32 (103)
243 COG1146 Ferredoxin [Energy pro 82.8 0.45 9.7E-06 33.9 0.3 20 186-205 37-56 (68)
244 TIGR02936 fdxN_nitrog ferredox 82.7 0.4 8.6E-06 36.0 0.0 19 245-263 19-37 (91)
245 PRK02651 photosystem I subunit 82.5 0.34 7.3E-06 35.6 -0.4 28 189-216 45-72 (81)
246 TIGR01683 thiS thiamine biosyn 82.4 5.3 0.00012 28.0 5.8 41 71-127 9-52 (64)
247 PRK09477 napH quinol dehydroge 82.3 0.98 2.1E-05 41.2 2.4 20 245-264 206-225 (271)
248 PRK05888 NADH dehydrogenase su 81.6 0.66 1.4E-05 39.1 1.0 19 245-263 56-74 (164)
249 TIGR02163 napH_ ferredoxin-typ 81.6 0.7 1.5E-05 41.8 1.2 18 246-263 200-217 (255)
250 TIGR01945 rnfC electron transp 81.6 0.85 1.9E-05 44.5 1.9 27 244-270 360-386 (435)
251 PF14157 YmzC: YmzC-like prote 81.4 0.89 1.9E-05 32.3 1.4 13 49-61 40-52 (63)
252 PF13459 Fer4_15: 4Fe-4S singl 81.0 0.56 1.2E-05 33.2 0.3 19 188-206 4-22 (65)
253 CHL00014 ndhI NADH dehydrogena 80.6 0.75 1.6E-05 39.0 1.0 19 246-264 58-76 (167)
254 COG4656 RnfC Predicted NADH:ub 80.3 1.1 2.4E-05 44.4 2.2 27 247-273 365-391 (529)
255 TIGR00403 ndhI NADH-plastoquin 80.1 0.76 1.6E-05 39.6 0.9 19 245-263 60-78 (183)
256 PRK06273 ferredoxin; Provision 79.5 0.76 1.6E-05 39.1 0.7 19 245-263 47-65 (165)
257 COG0493 GltD NADPH-dependent g 79.5 2.2 4.7E-05 42.1 4.0 25 184-208 17-42 (457)
258 TIGR01971 NuoI NADH-quinone ox 79.5 0.59 1.3E-05 37.1 0.0 18 246-263 42-59 (122)
259 PF13370 Fer4_13: 4Fe-4S singl 79.4 0.43 9.3E-06 33.2 -0.7 18 189-206 3-20 (58)
260 COG1142 HycB Fe-S-cluster-cont 79.3 0.71 1.5E-05 39.3 0.4 21 186-206 78-98 (165)
261 PRK06437 hypothetical protein; 79.1 7.7 0.00017 27.7 5.8 46 70-133 15-60 (67)
262 COG1142 HycB Fe-S-cluster-cont 78.9 0.75 1.6E-05 39.1 0.5 18 246-263 81-98 (165)
263 PF14691 Fer4_20: Dihydroprymi 78.8 1 2.2E-05 35.8 1.1 22 185-206 17-40 (111)
264 cd01916 ACS_1 Acetyl-CoA synth 78.2 1.2 2.5E-05 46.4 1.7 29 245-273 363-391 (731)
265 COG1453 Predicted oxidoreducta 78.1 2.2 4.8E-05 40.8 3.3 27 248-275 294-320 (391)
266 TIGR00314 cdhA CO dehydrogenas 77.6 1.3 2.8E-05 46.2 1.8 28 245-272 397-424 (784)
267 TIGR02179 PorD_KorD 2-oxoacid: 77.2 1.1 2.4E-05 32.5 0.9 19 245-263 23-41 (78)
268 PRK12576 succinate dehydrogena 76.6 1.6 3.4E-05 40.2 1.9 18 245-262 150-167 (279)
269 PRK15449 ferredoxin-like prote 76.6 1.2 2.7E-05 34.4 1.0 21 185-205 56-76 (95)
270 cd00565 ThiS ThiaminS ubiquiti 76.2 11 0.00025 26.3 5.9 44 66-127 7-53 (65)
271 TIGR00402 napF ferredoxin-type 75.7 1.3 2.8E-05 34.2 0.9 19 245-263 32-50 (101)
272 PRK07570 succinate dehydrogena 75.2 1.3 2.9E-05 40.1 1.0 18 245-262 155-172 (250)
273 COG2440 FixX Ferredoxin-like p 74.9 0.8 1.7E-05 35.5 -0.4 48 187-261 30-79 (99)
274 PRK08222 hydrogenase 4 subunit 74.9 1.2 2.6E-05 38.2 0.7 19 245-263 36-54 (181)
275 COG0479 FrdB Succinate dehydro 74.4 1.6 3.4E-05 39.2 1.3 17 245-261 140-156 (234)
276 TIGR01318 gltD_gamma_fam gluta 74.1 1.7 3.6E-05 42.7 1.5 29 246-274 39-69 (467)
277 PRK12575 succinate dehydrogena 73.9 2.2 4.8E-05 38.3 2.1 17 245-261 142-158 (235)
278 COG1141 Fer Ferredoxin [Energy 73.8 1.2 2.7E-05 32.2 0.4 19 188-206 6-24 (68)
279 TIGR00384 dhsB succinate dehyd 73.6 1.5 3.3E-05 38.6 1.0 19 187-205 191-209 (220)
280 PRK08640 sdhB succinate dehydr 73.1 2.4 5.2E-05 38.4 2.1 20 245-264 150-169 (249)
281 TIGR02494 PFLE_PFLC glycyl-rad 72.7 1.4 3E-05 40.3 0.5 20 245-264 46-65 (295)
282 TIGR02910 sulfite_red_A sulfit 72.4 1.6 3.5E-05 41.2 0.9 19 188-206 299-317 (334)
283 PRK05950 sdhB succinate dehydr 72.3 2.1 4.6E-05 38.1 1.6 18 245-262 139-156 (232)
284 PRK08053 sulfur carrier protei 71.6 18 0.0004 25.4 6.1 45 66-128 8-55 (66)
285 PRK00941 acetyl-CoA decarbonyl 71.1 2.1 4.6E-05 44.7 1.5 29 245-273 402-430 (781)
286 PRK15055 anaerobic sulfite red 70.6 1.9 4.2E-05 40.9 1.0 18 188-205 305-322 (344)
287 TIGR03290 CoB_CoM_SS_C CoB--Co 70.6 1.9 4.1E-05 35.5 0.8 19 188-206 44-62 (144)
288 PRK12385 fumarate reductase ir 70.1 2 4.2E-05 38.8 0.9 19 187-205 200-218 (244)
289 PRK12386 fumarate reductase ir 70.1 1.5 3.2E-05 39.8 0.1 18 245-262 140-157 (251)
290 PRK09625 porD pyruvate flavodo 69.8 1.3 2.8E-05 36.1 -0.3 19 245-263 57-75 (133)
291 PRK09624 porD pyuvate ferredox 68.9 1.9 4.1E-05 33.7 0.4 18 188-205 79-96 (105)
292 PLN00129 succinate dehydrogena 68.8 1.8 4E-05 39.8 0.4 17 245-261 185-201 (276)
293 PRK13552 frdB fumarate reducta 68.5 1.9 4.2E-05 38.7 0.4 18 245-262 147-164 (239)
294 PRK13030 2-oxoacid ferredoxin 68.3 1.4 3E-05 48.1 -0.6 52 187-264 626-680 (1159)
295 PRK06991 ferredoxin; Provision 68.1 1.8 3.9E-05 39.7 0.2 18 246-263 84-101 (270)
296 TIGR02066 dsrB sulfite reducta 67.9 1.9 4.2E-05 40.8 0.4 23 185-207 209-231 (341)
297 TIGR01944 rnfB electron transp 67.5 2.4 5.3E-05 35.7 0.9 19 245-263 111-129 (165)
298 TIGR00276 iron-sulfur cluster 66.8 2.5 5.3E-05 39.0 0.8 18 246-263 158-175 (282)
299 PRK12810 gltD glutamate syntha 66.3 8.3 0.00018 37.8 4.5 23 184-206 38-62 (471)
300 COG1144 Pyruvate:ferredoxin ox 66.0 2.3 5E-05 32.5 0.4 18 187-204 63-80 (91)
301 PRK12810 gltD glutamate syntha 65.4 3.3 7.2E-05 40.6 1.5 29 246-274 43-73 (471)
302 TIGR02486 RDH reductive dehalo 65.1 2.7 5.9E-05 39.4 0.8 17 247-263 205-221 (314)
303 TIGR01318 gltD_gamma_fam gluta 65.1 9.5 0.00021 37.4 4.6 23 184-206 34-58 (467)
304 COG1035 FrhB Coenzyme F420-red 64.7 2.7 5.9E-05 39.7 0.7 17 188-204 3-19 (332)
305 PRK12831 putative oxidoreducta 64.7 7.7 0.00017 38.1 3.9 23 184-206 34-58 (464)
306 PRK09326 F420H2 dehydrogenase 64.3 2.9 6.3E-05 39.4 0.8 18 188-205 51-68 (341)
307 COG0348 NapH Polyferredoxin [E 64.1 2.5 5.4E-05 40.7 0.3 17 248-264 246-262 (386)
308 PF13459 Fer4_15: 4Fe-4S singl 64.1 2.8 6.1E-05 29.5 0.5 16 246-261 5-20 (65)
309 PRK12831 putative oxidoreducta 63.7 4 8.7E-05 40.1 1.7 29 246-274 39-69 (464)
310 PRK08764 ferredoxin; Provision 63.6 2.7 5.8E-05 34.3 0.4 17 247-263 85-101 (135)
311 TIGR00273 iron-sulfur cluster- 63.6 2.1 4.6E-05 41.9 -0.3 18 245-262 291-308 (432)
312 PRK09623 vorD 2-ketoisovalerat 63.4 2.4 5.3E-05 33.0 0.1 19 245-263 49-67 (105)
313 PRK13029 2-oxoacid ferredoxin 63.3 1.9 4.2E-05 47.0 -0.6 50 187-262 654-706 (1186)
314 TIGR02912 sulfite_red_C sulfit 63.2 2.5 5.5E-05 39.3 0.2 20 186-205 197-216 (314)
315 PRK09193 indolepyruvate ferred 62.5 2 4.4E-05 46.9 -0.7 52 187-264 640-694 (1165)
316 PRK12577 succinate dehydrogena 62.5 2.6 5.5E-05 39.7 0.1 18 245-262 150-167 (329)
317 COG1139 Uncharacterized conser 62.5 3.5 7.6E-05 40.2 1.0 20 186-205 354-373 (459)
318 PRK05113 electron transport co 61.9 2.7 5.9E-05 36.4 0.1 19 245-263 112-130 (191)
319 PRK15449 ferredoxin-like prote 61.7 3.6 7.9E-05 31.8 0.8 20 245-264 59-78 (95)
320 cd06221 sulfite_reductase_like 61.1 4.1 8.8E-05 36.5 1.1 40 78-121 204-246 (253)
321 COG1141 Fer Ferredoxin [Energy 60.1 3.2 6.8E-05 30.1 0.2 19 246-264 7-25 (68)
322 PRK11749 dihydropyrimidine deh 59.9 4.6 9.9E-05 39.4 1.3 29 246-274 39-69 (457)
323 PRK14028 pyruvate ferredoxin o 59.5 3 6.5E-05 38.7 -0.0 19 245-263 245-263 (312)
324 COG2104 ThiS Sulfur transfer p 59.2 19 0.00041 26.0 4.1 33 70-118 12-44 (68)
325 TIGR02700 flavo_MJ0208 archaeo 58.8 4 8.7E-05 36.4 0.6 17 247-263 148-164 (234)
326 COG2221 DsrA Dissimilatory sul 57.2 3.6 7.8E-05 38.5 0.1 20 186-205 197-216 (317)
327 TIGR01316 gltA glutamate synth 57.1 9 0.0002 37.3 2.9 79 185-276 21-113 (449)
328 PRK08221 anaerobic sulfite red 56.3 4.8 0.0001 36.3 0.8 33 79-111 207-242 (263)
329 TIGR02060 aprB adenosine phosp 55.7 3.1 6.6E-05 34.0 -0.6 18 188-205 43-60 (132)
330 PF13370 Fer4_13: 4Fe-4S singl 55.7 4.5 9.8E-05 28.0 0.4 18 247-264 4-21 (58)
331 PRK11274 glcF glycolate oxidas 55.7 4.9 0.00011 38.5 0.7 18 188-205 71-88 (407)
332 PRK12778 putative bifunctional 55.6 6.1 0.00013 41.2 1.4 29 246-274 328-358 (752)
333 PRK06259 succinate dehydrogena 55.2 4.9 0.00011 39.6 0.6 19 245-263 131-149 (486)
334 PRK11168 glpC sn-glycerol-3-ph 53.3 6.6 0.00014 37.4 1.2 20 187-206 51-70 (396)
335 PRK12779 putative bifunctional 53.2 11 0.00024 40.5 3.0 28 94-121 877-908 (944)
336 PRK06944 sulfur carrier protei 52.8 56 0.0012 22.5 5.7 40 71-127 11-53 (65)
337 PRK07440 hypothetical protein; 52.3 57 0.0012 23.3 5.8 41 71-127 15-58 (70)
338 cd00754 MoaD Ubiquitin domain 52.0 27 0.0006 24.9 4.1 58 67-134 17-74 (80)
339 COG4231 Indolepyruvate ferredo 52.0 4.8 0.0001 41.0 -0.0 21 186-206 604-624 (640)
340 TIGR02512 Fe_only_hydrog hydro 51.5 5.5 0.00012 38.1 0.3 19 188-206 48-66 (374)
341 PF02824 TGS: TGS domain; Int 51.3 35 0.00075 23.6 4.3 32 72-117 13-44 (60)
342 TIGR03287 methan_mark_16 putat 51.1 4.4 9.6E-05 39.1 -0.4 18 188-205 328-345 (391)
343 PF02597 ThiS: ThiS family; I 51.0 33 0.00072 24.2 4.4 56 68-134 14-71 (77)
344 PRK08318 dihydropyrimidine deh 50.9 5.5 0.00012 38.5 0.2 17 188-204 375-391 (420)
345 PRK15033 tricarballylate utili 50.7 6.4 0.00014 37.9 0.6 17 188-204 65-81 (389)
346 TIGR03294 FrhG coenzyme F420 h 50.6 5.6 0.00012 35.5 0.2 19 245-263 172-190 (228)
347 PRK12775 putative trifunctiona 50.4 8.5 0.00018 41.7 1.6 29 246-274 330-360 (1006)
348 TIGR02911 sulfite_red_B sulfit 49.7 7.8 0.00017 34.9 1.0 24 94-121 223-246 (261)
349 TIGR02176 pyruv_ox_red pyruvat 49.3 7 0.00015 43.0 0.7 19 187-205 736-754 (1165)
350 COG1149 MinD superfamily P-loo 49.2 7.2 0.00016 35.9 0.7 18 246-263 68-85 (284)
351 COG1245 Predicted ATPase, RNas 49.0 6.5 0.00014 39.0 0.4 18 246-263 49-66 (591)
352 PLN02799 Molybdopterin synthas 48.5 20 0.00044 26.1 2.9 57 66-133 19-75 (82)
353 PRK07569 bidirectional hydroge 48.3 5.5 0.00012 35.5 -0.2 20 188-207 188-207 (234)
354 COG1600 Uncharacterized Fe-S p 48.2 8.8 0.00019 36.4 1.1 18 247-264 185-202 (337)
355 PRK13409 putative ATPase RIL; 47.2 6.6 0.00014 39.9 0.2 19 188-206 47-65 (590)
356 cd07030 RNAP_D D subunit of Ar 46.9 8.1 0.00018 34.9 0.7 31 64-96 11-41 (259)
357 PRK11749 dihydropyrimidine deh 46.5 14 0.00031 35.9 2.3 23 184-206 34-58 (457)
358 PRK00783 DNA-directed RNA poly 46.4 8.6 0.00019 34.8 0.7 17 247-263 169-185 (263)
359 PRK05863 sulfur carrier protei 46.4 62 0.0014 22.6 5.1 44 66-127 8-53 (65)
360 TIGR01317 GOGAT_sm_gam glutama 46.3 30 0.00065 34.1 4.6 23 184-206 36-62 (485)
361 PRK09853 putative selenate red 45.6 8 0.00017 41.9 0.5 21 245-265 884-908 (1019)
362 TIGR03379 glycerol3P_GlpC glyc 45.0 9.7 0.00021 36.4 0.9 19 188-206 50-68 (397)
363 PRK13795 hypothetical protein; 44.8 9.3 0.0002 39.3 0.8 19 245-263 579-597 (636)
364 PRK06488 sulfur carrier protei 43.9 93 0.002 21.5 5.7 44 66-128 8-54 (65)
365 PRK08493 NADH dehydrogenase su 43.4 10 0.00023 40.1 0.9 19 189-207 203-221 (819)
366 cd01764 Urm1 Urm1-like ubuitin 43.1 57 0.0012 24.8 4.8 64 69-135 22-89 (94)
367 PRK13409 putative ATPase RIL; 42.8 8.8 0.00019 39.0 0.2 18 246-263 48-65 (590)
368 COG1245 Predicted ATPase, RNas 42.6 9.3 0.0002 37.9 0.4 18 189-206 49-66 (591)
369 PF14451 Ub-Mut7C: Mut7-C ubiq 40.6 1.1E+02 0.0025 22.6 5.9 56 65-137 22-77 (81)
370 TIGR02064 dsrA sulfite reducta 40.4 8.9 0.00019 37.2 -0.1 22 245-266 270-291 (402)
371 PRK06083 sulfur carrier protei 40.1 1.1E+02 0.0024 22.9 5.8 44 66-127 26-72 (84)
372 COG2768 Uncharacterized Fe-S c 39.8 12 0.00026 35.0 0.7 19 246-264 192-210 (354)
373 TIGR01317 GOGAT_sm_gam glutama 39.6 15 0.00032 36.3 1.3 28 246-273 41-72 (485)
374 PRK12779 putative bifunctional 39.5 14 0.00031 39.8 1.2 29 246-274 187-229 (944)
375 COG0348 NapH Polyferredoxin [E 39.2 9.7 0.00021 36.6 -0.1 16 191-206 246-261 (386)
376 PRK13669 hypothetical protein; 37.6 17 0.00036 27.1 1.0 28 90-118 25-57 (78)
377 TIGR02064 dsrA sulfite reducta 37.4 15 0.00031 35.8 0.8 20 186-205 268-287 (402)
378 PRK12771 putative glutamate sy 36.6 12 0.00025 37.7 -0.0 19 187-205 538-556 (564)
379 PRK06567 putative bifunctional 35.9 25 0.00055 38.1 2.4 47 76-122 943-999 (1028)
380 TIGR01682 moaD molybdopterin c 35.5 91 0.002 22.5 4.7 56 69-134 19-74 (80)
381 TIGR03315 Se_ygfK putative sel 34.3 14 0.0003 40.2 0.1 18 246-263 880-901 (1012)
382 TIGR03336 IOR_alpha indolepyru 33.4 12 0.00026 38.0 -0.5 14 191-204 579-592 (595)
383 PTZ00305 NADH:ubiquinone oxido 33.3 15 0.00033 34.1 0.2 16 246-261 211-226 (297)
384 COG0247 GlpC Fe-S oxidoreducta 32.8 15 0.00033 34.5 0.1 21 186-206 54-74 (388)
385 COG2440 FixX Ferredoxin-like p 32.2 17 0.00037 28.2 0.3 20 185-204 60-79 (99)
386 TIGR03224 benzo_boxA benzoyl-C 31.3 14 0.00031 35.8 -0.3 18 188-205 37-54 (411)
387 PRK07696 sulfur carrier protei 30.1 1.1E+02 0.0024 21.6 4.2 33 67-117 9-42 (67)
388 PRK09129 NADH dehydrogenase su 29.3 19 0.00041 37.7 0.2 16 245-260 142-157 (776)
389 TIGR02484 CitB CitB domain pro 28.2 24 0.00052 33.9 0.6 17 189-205 47-63 (372)
390 TIGR01973 NuoG NADH-quinone ox 26.4 23 0.00049 36.0 0.1 16 245-260 140-155 (603)
391 KOG3049 Succinate dehydrogenas 25.9 23 0.0005 31.6 0.0 17 245-261 190-206 (288)
392 PRK08166 NADH dehydrogenase su 23.6 28 0.00061 36.9 0.2 16 245-260 147-162 (847)
393 TIGR01316 gltA glutamate synth 23.4 51 0.0011 32.1 1.9 29 246-274 28-57 (449)
394 PRK11840 bifunctional sulfur c 22.2 2.2E+02 0.0049 26.9 5.8 44 66-127 8-54 (326)
395 PF03658 Ub-RnfH: RnfH family 20.8 2.3E+02 0.0049 21.3 4.6 22 66-88 14-35 (84)
396 PF07293 DUF1450: Protein of u 20.7 51 0.0011 24.5 1.0 36 78-119 18-58 (78)
397 COG2878 Predicted NADH:ubiquin 20.6 47 0.001 28.8 0.9 18 189-206 144-161 (198)
398 KOG0063 RNAse L inhibitor, ABC 20.6 38 0.00082 33.6 0.4 17 190-206 50-66 (592)
No 1
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=2.6e-70 Score=467.90 Aligned_cols=237 Identities=69% Similarity=1.276 Sum_probs=224.3
Q ss_pred CCCCCceeEEEEEeeCCCCC-CCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecc
Q 023670 41 ASANTDTKKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA 119 (279)
Q Consensus 41 ~~~~~~~~~~~i~R~~p~~~-~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lA 119 (279)
++.+++.++|+|||||||.+ .+|+.|+|+|+.+++|.+|||||.+|+++.||||+||+|||+||||||+|+|||.+.||
T Consensus 40 ~~~~~rlKtFeIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI~G~NtLA 119 (288)
T KOG3049|consen 40 AATGPRLKTFEIYRWNPDNPGDKPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNINGTNTLA 119 (288)
T ss_pred cccCCccceEEEEecCCCCCCCCccceeeeecHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceeccCCCceeE
Confidence 45578999999999999988 69999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC-CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCC-CCCCCCCChhhHhhhcccccCcccCc
Q 023670 120 CLTKISP-SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPM-PGKEIPQSKKDRAKLDGMYECILCAC 197 (279)
Q Consensus 120 C~t~v~~-g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~-~~~~~~~s~~~~~~~~~~~~CI~CG~ 197 (279)
|.++|+. ++...+|.||+|+.||||||+|++.||++|++++||++.++.... .+++++||.+++.++++++.||+|.+
T Consensus 120 Ci~kId~n~sK~~kIyPLPHmfvvkDLVpDm~~FY~QYksIqPwlqrk~~~~~~g~~q~lQS~~dR~kLDGlYECILCAC 199 (288)
T KOG3049|consen 120 CICKIDQNESKSTKIYPLPHMFVVKDLVPDMTNFYAQYKSIEPWLQRKNPAKEPGKKQYLQSVEDRAKLDGLYECILCAC 199 (288)
T ss_pred EEEeeccCCcccceeecCcceeeehhhcccHHHHHHHHhcccHHhhcCCcccCccHHHHHHhHHHHHhhccHHHHHHHHH
Confidence 9999994 577889999999999999999999999999999999998765431 35788999999999999999999999
Q ss_pred ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHH
Q 023670 198 CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQL 277 (279)
Q Consensus 198 C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~ 277 (279)
|+.+||+||||.+.|+||++++++|||+.|+||+.+++|+..+.+++.+|+|++..+|+..||+|++|+.+|.+++..++
T Consensus 200 CsTSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~slyrCHtImNCtrtCPKgLNPg~aI~eiK~ll~ 279 (288)
T KOG3049|consen 200 CSTSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKLLA 279 (288)
T ss_pred hcCCCcccccCcccccCHHHHHHHHhhhhcchhHHHHHHHHHhcCchhheehhhhhhhhhcCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998999999999999999999999999999999998875
No 2
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=100.00 E-value=3.5e-68 Score=481.60 Aligned_cols=272 Identities=71% Similarity=1.227 Sum_probs=230.1
Q ss_pred CcchhHHHHhhhcccccchhhhhhhhhhhhhhhhhhccCCCCCCCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHH
Q 023670 1 MATGLIRRAISSSAAVAQPARLLTARFHASEAEAQKVEPKASANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVL 80 (279)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvL 80 (279)
||.|+++|+-.+..-++.|+... .+.+++.+.++++.+++.++++|+||||||+.+.+||||+|+|++.+.++|||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~R~~p~~~~~~~~~~y~v~~~~~~~tVL 76 (276)
T PLN00129 1 MAAGLLRRLAGAKAGLLAPAAAA----SAAASAETKASSKGSKPSNLKEFQIYRWNPDNPGKPHLQSYKVDLNDCGPMVL 76 (276)
T ss_pred Cchhhhhhhhcccccccccchhh----hhhhcccccccCCCCCCCceEEEEEEeeCCCCCCCceeEEEEeCCCCCCchHH
Confidence 89999999854444444444211 11122223333344556678999999999998889999999999874379999
Q ss_pred HHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCC-CceEEeeCCCCcchhhhhhccchhhhhhhcc
Q 023670 81 DALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSG-SASTITPLPHMFVIKDLVVDMTNFYNQYKSI 159 (279)
Q Consensus 81 dal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~-~~~~iepl~~~~vikDLvvD~~~~~~~~~~~ 159 (279)
|+|++|+.++||+|+||++||+|+||+|+|+|||+++|||+|+|.+.. ++++||||++||||||||||++.|+++++++
T Consensus 77 d~L~~Ik~~~D~sLsfr~sCr~giCGsCam~ING~p~LAC~t~v~~~~~~~i~iePl~~fpVirDLvVD~~~f~~klk~v 156 (276)
T PLN00129 77 DVLIKIKNEQDPSLTFRRSCREGICGSCAMNIDGKNTLACLTKIDRDESGPTTITPLPHMFVIKDLVVDMTNFYQQYKSI 156 (276)
T ss_pred HHHHHHHHcCCCCeEEeccCCCCCCCCCeeEECCcccccccccHhhcCCCcEEEEECCCCCeeeecccccHHHHHHHHhc
Confidence 999999988999999999999999999999999999999999999653 5789999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHH
Q 023670 160 EPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEA 239 (279)
Q Consensus 160 ~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~ 239 (279)
+||+..+...+....+.+|++++.+.++.+..||+||.|+++||++.+++++|+||++++++++++.|+|++..++|++.
T Consensus 157 ~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~~~~flGP~~l~~a~R~~~D~RD~~~~erl~~ 236 (276)
T PLN00129 157 EPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKFLGPAALLHAYRWISDSRDEYTKERLEA 236 (276)
T ss_pred cccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCcccCcccccHHHHHHHHHhcCCccccchHHHHHH
Confidence 99998654332122468899999999999999999999999999998777779999999999999999998766778876
Q ss_pred hhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHH
Q 023670 240 IDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 276 (279)
Q Consensus 240 l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~ 276 (279)
+.+..++|.|++||+|+.+||+||++.++|.++|+.+
T Consensus 237 l~~~~gl~~C~~C~~C~~vCPkgI~p~~~I~~lR~~~ 273 (276)
T PLN00129 237 LDDEFKLYRCHTIRNCSNACPKGLNPAKAIAKIKQLL 273 (276)
T ss_pred HHhcCCCCcCcChhhccccCCCCCCHHHHHHHHHHHH
Confidence 6656699999999999999999999999999999764
No 3
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=100.00 E-value=9.4e-68 Score=466.44 Aligned_cols=228 Identities=53% Similarity=0.974 Sum_probs=212.1
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP 126 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~ 126 (279)
+++|+|+||||+.+ +||||+|+|++++ |+||||||.+|++++||+|+|+++||+||||||+|+|||+++|||+|.+.+
T Consensus 2 ~~~~~i~R~~p~~~-~p~~~~yev~~~~-~~~vLdaL~~Ik~e~d~~Lsfr~sCR~gICGSCam~ING~prLAC~t~~~~ 79 (234)
T COG0479 2 TLKFKIYRYNPDDD-KPYWQTYEVPYDE-GMTVLDALLYIKEEQDPTLSFRRSCREGICGSCAMNINGKPRLACKTLMKD 79 (234)
T ss_pred cEEEEEEEECCCCC-CcceEEEEecCCC-CCcHHHHHHHHHHhcCCccchhhhccCCcCCcceeEECCccccchhchhhh
Confidence 68999999999987 9999999999997 999999999999999999999999999999999999999999999999997
Q ss_pred CCC-ceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCc
Q 023670 127 SGS-ASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 127 g~~-~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~ 205 (279)
..+ .++||||++||||||||||+++||++|++++||+..+.... .++ .+|++++++.+++++.||.||.|+++||++
T Consensus 80 ~~~~~i~iePL~~fpVIkDLVVD~~~f~~~~~~ikp~~~~~~~~~-~~~-~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~~ 157 (234)
T COG0479 80 LEEGVITIEPLPNFPVIRDLVVDMEEFYEKLRKIKPYLIRDDEPD-PGE-RLQSPEEREKLDELSECILCGCCTAACPSI 157 (234)
T ss_pred ccCCceEEEECCCCCceeeeeeccHHHHHhhhccccceecCCcCC-Ccc-ccCCHHHHHHHHhhhhccccchhhhhCCcc
Confidence 533 79999999999999999999999999999999999853332 233 899999999999999999999999999999
Q ss_pred ccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670 206 WWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279 (279)
Q Consensus 206 ~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~ 279 (279)
++++ +|+||+++.+++||+.|+||+.+.+|+..+....|+|.|++|++|+++||+||+++.+|..||++++++
T Consensus 158 ~~~~-~f~GPa~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~i~p~~aI~~lk~~~~~~ 230 (234)
T COG0479 158 WWNP-DFLGPAALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKGIPPAKAIAELKRRLAKR 230 (234)
T ss_pred cccc-CCcCHHHHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCCCCHHHHHHHHHHHHHHH
Confidence 9875 899999999999999999999888999877767799999999999999999999999999999988764
No 4
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1e-63 Score=445.15 Aligned_cols=231 Identities=50% Similarity=1.022 Sum_probs=210.1
Q ss_pred CceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccc
Q 023670 45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKI 124 (279)
Q Consensus 45 ~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v 124 (279)
..+++|+||||||+.+.+||||+|+|++.+.++||||+|++|+ ++||+|+|+++||+|+||+|+|+|||+++|||+|++
T Consensus 2 ~~~~~~~i~R~~~~~~~~~~~~~y~v~~~~~~~tvld~L~~ik-~~d~~l~fr~sCr~giCGsCa~~iNG~~~LaC~t~~ 80 (235)
T PRK12575 2 ADTRILHIYRYDPDDDAAPRMQRYEIAPRAEDRMLLDVLGRVK-AQDETLSYRRSCREGICGSDAMNINGRNGLACLTNM 80 (235)
T ss_pred CceEEEEEEeeCCCCCCCceeEEEEecCCCCCCcHHHHHHHHH-hcCCCeeeeccCCCCCCCCCeeEECCeEcchhhCcH
Confidence 3579999999999988999999999998763589999999999 789999999999999999999999999999999999
Q ss_pred cCCCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCC
Q 023670 125 SPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPS 204 (279)
Q Consensus 125 ~~g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~ 204 (279)
.+..++++||||++||||||||||++.|++++++++||+..+...+ +.+.+|++++.+.++++..||+||.|.++||+
T Consensus 81 ~~~~~~i~iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~--~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~ 158 (235)
T PRK12575 81 QALPREIVLRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPP--ERERLQTPQEREQLDGLYECILCACCSTACPS 158 (235)
T ss_pred hHcCCCEEEeECCCCCccccceecCHHHHHHHHhccCccccCCCCc--cccccCCHHHHHHHHhhhhCcccccccccccC
Confidence 9655679999999999999999999999999999999998654332 34678999999999999999999999999999
Q ss_pred cccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670 205 YWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 205 ~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~ 278 (279)
+..++++|+||++++++++++.++++....++++.+.++.++|.|++||+|+.+||+||++.++|..+|+.+++
T Consensus 159 ~~~~~~~f~GP~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPkgI~~~~~I~~lR~~~~~ 232 (235)
T PRK12575 159 YWWNPDKFVGPAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKGLNPARAIGQIRTMLAR 232 (235)
T ss_pred ccccCCCcCCHHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCCCCcHHHHHHHHHHHHHh
Confidence 98776779999999999999999998766677776665678999999999999999999999999999998875
No 5
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1e-63 Score=446.64 Aligned_cols=232 Identities=32% Similarity=0.609 Sum_probs=206.6
Q ss_pred CceeEEEEEeeCCC-CCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccc
Q 023670 45 TDTKKFQIYRWNPD-SPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTK 123 (279)
Q Consensus 45 ~~~~~~~i~R~~p~-~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~ 123 (279)
.++++|+|+||||+ .+.+||||+|+|++++ ++||||||++|++++||+|+||+|||+|+||+|+|+|||+++|||+|+
T Consensus 2 ~~~~~~~i~R~~p~~~~~~~~~~~y~v~~~~-~~tvLdaL~~Ik~~~D~sL~fr~sCr~giCGsCam~ING~~~LAC~t~ 80 (239)
T PRK13552 2 GRTLTFNIFRYNPQDPGSKPHMVTYQLEETP-GMTLFIALNRIREEQDPSLQFDFVCRAGICGSCAMVINGRPTLACRTL 80 (239)
T ss_pred CceEEEEEEeeCCCCCCCCcceEEEEecCCC-CCCHHHHHHHHHhcCCCCeeEeccCCCCCCCCceeEECCeEhhhhhcc
Confidence 46799999999995 5678999999999998 999999999999889999999999999999999999999999999999
Q ss_pred ccCCC-CceEEeeCCCCcchhhhhhccchhhhhh-hccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCC
Q 023670 124 ISPSG-SASTITPLPHMFVIKDLVVDMTNFYNQY-KSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTS 201 (279)
Q Consensus 124 v~~g~-~~~~iepl~~~~vikDLvvD~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~ 201 (279)
+.+.. ++++||||++||||||||||++.|++++ +.++||+..+.....+..+.+|+++++++++.+..||+||.|+++
T Consensus 81 v~~~~~~~i~iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~sa 160 (239)
T PRK13552 81 TSDYPDGVITLMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAA 160 (239)
T ss_pred HhhcCCCcEEEEECCCCCcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHhh
Confidence 99643 4799999999999999999999999999 899999986422211224678999999999999999999999999
Q ss_pred CCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHH-HHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670 202 CPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERL-EAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 202 CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl-~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~ 278 (279)
||++..+ .+|+||+++.++++++.|+|++...+++ ..+....++|.|++||+|+++||+||++.++|.++|+.+++
T Consensus 161 CP~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~gi~~C~~C~~C~~vCPk~I~~~~~I~~lr~~~~~ 237 (239)
T PRK13552 161 CGTKQMR-EDFVGAVGLNRIARFELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKDLPLQQQIAYLRRKMAA 237 (239)
T ss_pred CCCCccC-CCccChHHHHHHHHHhhCCCcchhHHHHHHHhccCCCcCCCcCcCccchhCCCCCcHHHHHHHHHHHHHh
Confidence 9998765 5799999999999999999987666666 34445568999999999999999999999999999988765
No 6
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=8.7e-62 Score=436.47 Aligned_cols=230 Identities=26% Similarity=0.512 Sum_probs=205.3
Q ss_pred CceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccC-------CCCCccccCCCCCCccCeeEEEECCeee
Q 023670 45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSE-------IDPSLTFRRSCREGICGSCAMNIDGCNG 117 (279)
Q Consensus 45 ~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~-------~dptl~~~~~c~~g~CG~C~v~inG~~~ 117 (279)
..+++|+|+|||| .+.+||||+|+|++++ ++||||||.+|+++ +|++|+|+++||+|+||+|+|+|||+++
T Consensus 3 ~~~~~~~i~R~~~-~~~~~~~q~y~v~~~~-~~tvLdaL~~I~~~~~~~~g~~~~~l~fr~sCr~giCGsCam~ING~p~ 80 (249)
T PRK08640 3 EKTVRLIIKRQDG-PDSKPYWEEFEIPYRP-NMNVISALMEIRRNPVNAKGEKTTPVVWDMNCLEEVCGACSMVINGKPR 80 (249)
T ss_pred CcEEEEEEEeeCC-CCCCceeEEEEecCCC-CCcHHHHHHHHHhcccccccccCCCeeEecccCCCCCCcCeeEECCccc
Confidence 3479999999999 6689999999999988 99999999999864 4778999999999999999999999999
Q ss_pred ccccccccCCCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCc
Q 023670 118 LACLTKISPSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCAC 197 (279)
Q Consensus 118 lAC~t~v~~g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~ 197 (279)
|||+|.+.+.+++++||||++||||||||||++.|+++++.++||+..+..+. .+.+.+|++++...++++..||+||.
T Consensus 81 LAC~t~v~~~~~~i~iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~CI~CG~ 159 (249)
T PRK08640 81 QACTALIDQLEQPIRLEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYD-LGPGPRMPEEKRQWAYELSKCMTCGC 159 (249)
T ss_pred hhhhChHHHcCCcEEEEECCCCCccccCcEEChHHHHHHHhhCCccccCCCCC-CCcccCCCHHHHHHHhhhhhccCcCc
Confidence 99999998666789999999999999999999999999999999998765432 24557799999999999999999999
Q ss_pred ccCCCCCcccCCCcccCHHHHHHHHHHhhcC-cchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHH
Q 023670 198 CSTSCPSYWWTSEAYLGPAALLHANRWISDS-RDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 276 (279)
Q Consensus 198 C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~-r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~ 276 (279)
|+++||++..+ ++|+||+++.+++++..++ ++....+|++.+....++|.|++||+|+.+||+||++.+.|..+|+.+
T Consensus 160 C~saCP~~~~~-~~f~GP~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkgI~~~~~I~~lr~~~ 238 (249)
T PRK08640 160 CLEACPNVNEK-SDFIGPAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKGIPLTTSIAAMNRET 238 (249)
T ss_pred ccccCCCCccC-CCccChHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCCCCHHHHHHHHHHHH
Confidence 99999999765 5799999999999998888 443455677766556799999999999999999999999999999988
Q ss_pred Hh
Q 023670 277 LK 278 (279)
Q Consensus 277 ~~ 278 (279)
++
T Consensus 239 ~~ 240 (249)
T PRK08640 239 TK 240 (249)
T ss_pred HH
Confidence 75
No 7
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.7e-59 Score=420.74 Aligned_cols=230 Identities=31% Similarity=0.606 Sum_probs=208.2
Q ss_pred ceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (279)
Q Consensus 46 ~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~ 125 (279)
++++|+||||||+++..||||.|+|++++ ++||||||.+|+.++||+|+|+.+|++|+||+|+|+|||+++|||.|++.
T Consensus 5 ~~v~~~i~R~~~~~~~~~~~~~~~v~~~~-~~tvl~~L~~ik~~~d~~l~fr~~C~~giCGsC~v~InG~~~laC~t~~~ 83 (244)
T PRK12385 5 KNLKIEVLRYNPEVDTEPHSQTYEVPYDE-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLR 83 (244)
T ss_pred cEEEEEEEeeCCCCCCCceeEEEEeeCCC-CCcHHHHHHHHHHhcCCCceeccCCCCCcCCCCcceECccChhhHhhHHH
Confidence 47999999999999999999999999998 99999999999988899999999999999999999999999999999999
Q ss_pred CCCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCc
Q 023670 126 PSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 126 ~g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~ 205 (279)
+.++.++||||++|||||||+||++.|+++++.++||+..+...+ .+.+.+|++++.+.+..+..||+||.|+++||++
T Consensus 84 ~~~~~~~iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~ 162 (244)
T PRK12385 84 DYTGGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTP-DDGPNKQTPAQMAKYHQFSGCINCGLCYAACPQF 162 (244)
T ss_pred HcCCCeEEeeCCCCCeeeeCeeecHHHHHHHHHhcCeeeCCCCCC-CcccccCCHHHHHHHHHHHhcCcCccccCcCcCc
Confidence 866779999999999999999999999999999999998654332 2335678888988888999999999999999999
Q ss_pred ccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670 206 WWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 206 ~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~ 278 (279)
..+ ++|+||+++.+++++..++++....+++..+....++|.|++||+|+.+||+||++.++|..+|+.+++
T Consensus 163 ~~~-~~y~GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~~C~~C~~vCP~~I~~~~~I~~~r~~~~~ 234 (244)
T PRK12385 163 GLN-PEFIGPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESAK 234 (244)
T ss_pred ccC-CCCCCHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCcCcccccccCCCCCCHHHHHHHHHHHHHH
Confidence 764 679999999999999999998776677765554568999999999999999999999999999987764
No 8
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.5e-58 Score=414.80 Aligned_cols=224 Identities=27% Similarity=0.539 Sum_probs=200.6
Q ss_pred ceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (279)
Q Consensus 46 ~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~ 125 (279)
-+++|+|+||||+. +|||+|+|++++ ++||||+|++|+.++||+|+|+.||+.|+||+|+|.|||+++|||+|++.
T Consensus 3 ~~~~~~I~R~~~~~---~~~q~y~v~~~~-~~tvLd~L~~i~~~~d~~l~~r~~C~~g~CGsCa~~InG~p~laC~t~~~ 78 (251)
T PRK12386 3 YTAKFRVWRGDASG---GELQDYTVEVNE-GEVVLDVIHRLQATQAPDLAVRWNCKAGKCGSCSAEINGRPRLMCMTRMS 78 (251)
T ss_pred cEEEEEEEcCCCCC---CceEEEEEeCCC-CCCHHHHHHHhccccCCCCcccCCCCCCcCCCCEEEECccEeccHHhHHH
Confidence 46899999999754 599999999998 89999999999988999999999999999999999999999999999998
Q ss_pred --CCCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCC
Q 023670 126 --PSGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCP 203 (279)
Q Consensus 126 --~g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP 203 (279)
++++.++||||++||||||||||++.|++++++++||+......+ .+.+|+++++++++.+..||+||.|+++||
T Consensus 79 ~~~~~~~itiepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~CI~CG~C~s~CP 155 (251)
T PRK12386 79 TFDEDETVTVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQP---GEYRMQQVDVERSQEFRKCIECFLCQNVCH 155 (251)
T ss_pred HhCCCCeEEEccCCCCCccccceEEcHHHHHHHHhcCCcccCCCCCc---cccCCCHHHHHHHhchhhcccCCcccCcCC
Confidence 345689999999999999999999999999999999997543322 357799999999999999999999999999
Q ss_pred CcccC---CCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHH-HHHHHHHHHHh
Q 023670 204 SYWWT---SEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGK-QIINIKQLQLK 278 (279)
Q Consensus 204 ~~~~~---~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~-~I~~lR~~~~~ 278 (279)
++.++ +.+|+||++++++++++.|+||. .+|+..+....++|.|++||+|+++||+||++.+ .|..+|+.+.+
T Consensus 156 v~~~~~~~~~~f~GP~~~~~a~r~~~D~Rd~--~~rl~~~~~~~gl~~C~~C~~C~~vCPkgI~~~~~~I~~lr~~~~~ 232 (251)
T PRK12386 156 VVRDHEENKPAFAGPRFLMRIAELEMHPLDT--ADRRAEAQEEHGLGYCNITKCCTEVCPEHIKITDNALIPMKERVVD 232 (251)
T ss_pred cccccCCCcccccCHHHHHHHHHhhcCccch--HHHHHHhhcccCcccCcCCCCcCCcCCCCcChhHHHHHHHHHHHHH
Confidence 99764 35799999999999999999986 3566655555689999999999999999999995 99999987764
No 9
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=5.2e-58 Score=427.57 Aligned_cols=227 Identities=37% Similarity=0.684 Sum_probs=205.3
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP 126 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~ 126 (279)
.++|+||||||+. +||||+|+|++++ |+||||||++|++++||+|||+.+|+.|+||+|+|+|||+++|||+|++.+
T Consensus 2 ~i~~~i~R~~~~~--~p~~~~~~v~~~~-~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~inG~~~laC~t~v~~ 78 (329)
T PRK12577 2 EVLFKILRQKQNS--APYVQTYTLEVEP-GNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRINGRSALACKENVGS 78 (329)
T ss_pred eEEEEEEeeCCCC--CCeEEEEEEECCC-CChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEECCeeecCcccchhh
Confidence 5799999999964 8999999999998 999999999999888899999999999999999999999999999999985
Q ss_pred C-----------CCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCccc
Q 023670 127 S-----------GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILC 195 (279)
Q Consensus 127 g-----------~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~C 195 (279)
+ +++++||||++||||||||||++.|+++++.++||+..+.... .+.+.+|++++...++.+..||+|
T Consensus 79 ~~~~~~~~~~~~~~~i~iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~~~~~~~-~~~e~~~~p~~~~~~~~~~~Ci~C 157 (329)
T PRK12577 79 ELARLSDSNSGAIPEITIAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQV-PEREFLQTPEERSKLDQTGNCILC 157 (329)
T ss_pred hhccccccccCCCCeEEEEECCCCCccccceeccHHHHHHHHhccCccccCCCCC-CcccccCCHHHHHHHHHhhhCccc
Confidence 2 3689999999999999999999999999999999998654422 355788999999999999999999
Q ss_pred CcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhh-cccCccCchhhhhhhhhCCCCCChHHHHHHHHH
Q 023670 196 ACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAID-DEFKLYRCHTILNCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 196 G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~-~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~ 274 (279)
|.|+++||++..+ ++|+||+++.++++++.|++++...++++.+. ...++|.|++|++|+.+||+||++.++|..+|+
T Consensus 158 G~C~s~CP~~~~~-~~f~GP~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I~~~~~I~~lr~ 236 (329)
T PRK12577 158 GACYSECNAREVN-PEFVGPHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEVAPLDQITKIKQ 236 (329)
T ss_pred CcccccCCCCCcC-cCcCCHHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCCchHHHHHHHHH
Confidence 9999999999865 57999999999999999999876667776554 456899999999999999999999999999998
Q ss_pred HHHh
Q 023670 275 LQLK 278 (279)
Q Consensus 275 ~~~~ 278 (279)
.+++
T Consensus 237 ~~~~ 240 (329)
T PRK12577 237 EILA 240 (329)
T ss_pred HHHH
Confidence 8864
No 10
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=100.00 E-value=4.2e-58 Score=409.49 Aligned_cols=228 Identities=63% Similarity=1.163 Sum_probs=205.5
Q ss_pred EEEEEeeCCCCCCCCceEEEEEecc-CCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCC
Q 023670 49 KFQIYRWNPDSPSKPELKEFEINLK-ECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS 127 (279)
Q Consensus 49 ~~~i~R~~p~~~~~~~~~~~~v~~~-~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g 127 (279)
+|+||||||+.|.+|||+.|+|+++ + ++||||||+++++++||+|+|+.+|+.|+||+|+|+|||+++|||+|++.+.
T Consensus 1 ~~~v~r~~~~~~~~~~~~~~~v~~~~~-~~tvl~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~vnG~~~laC~t~~~~~ 79 (232)
T PRK05950 1 TFKIYRYNPDVDANPRMQTYEVDVDEC-GPMVLDALIKIKNEIDPTLTFRRSCREGVCGSDAMNINGKNGLACITPISDL 79 (232)
T ss_pred CeEEEecCCCCCCCceeEEEEeCCCCC-CCHHHHHHHHhCCccCCcceeeCCCCCCCCCCCEEEECCcCccchhChHhHc
Confidence 5899999999999999999999998 8 9999999999997789999999999999999999999999999999999975
Q ss_pred -CCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcc
Q 023670 128 -GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 128 -~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~ 206 (279)
+++++||||++||||||||||++.|+++++.++||+..+...+ ..+..+++++...+.++..||+||.|.++||++.
T Consensus 80 ~~~~~tiepl~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~ 157 (232)
T PRK05950 80 KKGKIVIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPPP--ARERLQSPEDREKLDGLYECILCACCSTSCPSFW 157 (232)
T ss_pred CCCeEEEEECCCCCeeeeceeehHHHHHHHHhccCeecCCCCCC--chhccCCHHHHHHHHhHHhccccccccccCCccc
Confidence 6789999999999999999999999999999999998544322 3356788888888999999999999999999997
Q ss_pred cCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670 207 WTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279 (279)
Q Consensus 207 ~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~ 279 (279)
.++++|+||++++++++++.++++....++++.+.++.++|.|++||+|+.+||+||++.++|..||+.++++
T Consensus 158 ~~~~~~~gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~~Cg~C~~~CP~gi~~~~~I~~lR~~~~~~ 230 (232)
T PRK05950 158 WNPDKFLGPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKGLNPTKAIGEIKRMLLER 230 (232)
T ss_pred cCCCCCCCHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCcCcCCcCccccCCCCHHHHHHHHHHHHHhh
Confidence 6666699999999999999888876555666655555689999999999999999999999999999998753
No 11
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=100.00 E-value=1.1e-56 Score=409.72 Aligned_cols=228 Identities=31% Similarity=0.596 Sum_probs=203.5
Q ss_pred CCCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccc
Q 023670 43 ANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLT 122 (279)
Q Consensus 43 ~~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t 122 (279)
+.+++++|+||||||+. .||||+|+|++++ ++||||||+++++.+||+|+|+.+|+.|+||+|+|+|||+++|||.|
T Consensus 4 ~~~~~~~~~i~R~~~~~--~~~~~~~~v~~~~-~~tvLd~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~ING~~~laC~t 80 (279)
T PRK12576 4 SPEKEVIFKVKRYDPEK--GSWWQEYKVKVDR-FTQVTEALRRIKEEQDPTLSYRASCHMAVCGSCGMKINGEPRLACKT 80 (279)
T ss_pred CCCcEEEEEEEecCCCC--CCeEEEEEEecCC-CCHHHHHHHHhCCccCCCceecCCCCCCCCCCCEEEECCcEeccccC
Confidence 36778999999999975 4999999999998 99999999999987899999999999999999999999999999999
Q ss_pred cccC----CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcc
Q 023670 123 KISP----SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACC 198 (279)
Q Consensus 123 ~v~~----g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C 198 (279)
++.+ +++.++||||++||||||||||++.|++++++++||+.+.........+.++++++.+.+++...||+||+|
T Consensus 81 ~v~~~~~~~~~~~tiePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C 160 (279)
T PRK12576 81 LVLDVAKKYNSVITIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLC 160 (279)
T ss_pred cHHHhhcCCCCcEEEEECCCCceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCcc
Confidence 9985 457899999999999999999999999999999999986543321224678999999999999999999999
Q ss_pred cCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHH
Q 023670 199 STSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQ 276 (279)
Q Consensus 199 ~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~ 276 (279)
+++||++..+ ++|+||.+++++++++.++++....+++..+ ..++|.|++||+|+.+||+||++.++|..+|+.+
T Consensus 161 ~~~CP~~~~~-~~flgP~~l~~a~r~~~d~rd~~~~~rl~~~--~~~i~~C~~Cg~C~~~CP~~I~~~~~I~~lR~~~ 235 (279)
T PRK12576 161 VSACPVVAID-PEFLGPAAHAKGYRFLADPRDTITEERMKIL--IDSSWRCTYCYSCSNVCPRDIEPVTAIKKTRSFT 235 (279)
T ss_pred cccCCCcccc-CCcCCHHHHHHHHHHhcCccccchHHHHHHH--cCcCCcccCcccchhhCCCCCcHHHHHHHHHHHH
Confidence 9999999765 5799999999999999999887665666544 3478999999999999999999999999999875
No 12
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=100.00 E-value=1.2e-55 Score=390.75 Aligned_cols=219 Identities=52% Similarity=0.982 Sum_probs=195.6
Q ss_pred EEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC-CCCc
Q 023670 52 IYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP-SGSA 130 (279)
Q Consensus 52 i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~-g~~~ 130 (279)
||||||+.+.+||||.|+|++++ |+||||||++++.++||+|+|+.+|+.|+||+|+|+|||+++|||+|++.+ |.+.
T Consensus 1 i~R~~~~~~~~~~~~~~~v~~~~-~~tvl~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~vnG~~~laC~t~v~~~g~~~ 79 (220)
T TIGR00384 1 VLRFNPDVDEKPHLQSYEVPADE-GMTVLDALNYIKDEQDPSLAFRRSCRNGICGSCAMNVNGKPVLACKTKVEDLGQPV 79 (220)
T ss_pred CcCcCCCCCCCceeEEEEEeCCC-CCcHHHHHHHHHHhcCCCceeecccCCCCCCCCeeEECCEEhhhhhChHHHcCCCc
Confidence 79999999999999999999988 999999999999778999999999999999999999999999999999998 7666
Q ss_pred eEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCC
Q 023670 131 STITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE 210 (279)
Q Consensus 131 ~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~ 210 (279)
++||||++||+||||+||++.|+++++.++||+....... .+.+.++++++...+.++.+||+||.|+++||++..+ .
T Consensus 80 ~~iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~-~ 157 (220)
T TIGR00384 80 MKIEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPE-PEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWN-P 157 (220)
T ss_pred EEEeeCCCCceeeeeeechHHHHHHHHhcCCeecCCCCCC-ccccccCCHHHHHHHhhhhhccccccccccCCCCccC-C
Confidence 9999999999999999999999999999999998644222 1335678888888889999999999999999999754 4
Q ss_pred cccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670 211 AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIK 273 (279)
Q Consensus 211 ~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR 273 (279)
+|+||++++++++++.++++....++++.+.+..++|.|++||+|+++||+||++.++|..||
T Consensus 158 ~~~gp~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~I~~~~~I~~lR 220 (220)
T TIGR00384 158 EFLGPAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKGVNPARAIEKLK 220 (220)
T ss_pred CCcCHHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCCCCHHHHHHHhC
Confidence 699999999999999888875555666545445689999999999999999999999999886
No 13
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=100.00 E-value=1.5e-53 Score=382.75 Aligned_cols=222 Identities=24% Similarity=0.478 Sum_probs=178.3
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEe-ccCCCchHHHHHHHcccCC----CCCccccCCCCCCccCeeEEEECCee-----
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEIN-LKECGPMVLDALIKIKSEI----DPSLTFRRSCREGICGSCAMNIDGCN----- 116 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~-~~~~g~tvLdal~~~~~~~----dptl~~~~~c~~g~CG~C~v~inG~~----- 116 (279)
.++|+|||||| .+.+||||+|+|+ +++ ++||||||.+|++++ +++|+||+|||+|+||||+|+|||++
T Consensus 2 ~~~~~i~R~~~-~~~~~~~q~y~v~~~~~-~~tvLd~L~~Ik~~~~~~~~~~l~fr~sCr~~iCGsCam~ING~p~~~~~ 79 (250)
T PRK07570 2 KLTLKIWRQKG-PDDKGKFETYEVDDISP-DMSFLEMLDVLNEQLIEKGEEPVAFDHDCREGICGMCGLVINGRPHGPDR 79 (250)
T ss_pred eEEEEEEecCC-CCCCceeEEEEecCCCC-CCcHHHHHHHHHHHhhccCCCCeeEeccccCCcCCcceeEECCccCCCCc
Confidence 47899999996 4678999999999 787 899999999997543 35699999999999999999999999
Q ss_pred -eccccccccCC--CCceEEeeCC--CCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhccccc
Q 023670 117 -GLACLTKISPS--GSASTITPLP--HMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYE 191 (279)
Q Consensus 117 -~lAC~t~v~~g--~~~~~iepl~--~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 191 (279)
+|||+|.+.+. +++++||||+ +||||||||||++.| ++++.++||+.++.....++.+.+|++++++.+.+...
T Consensus 80 ~~LAC~t~~~~~~~~~~i~iePl~~~~fpvikDLvVD~~~~-~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (250)
T PRK07570 80 GTTTCQLHMRSFKDGDTITIEPWRAAAFPVIKDLVVDRSAL-DRIIQAGGYVSVNTGGAPDANAIPVPKEDADRAFDAAA 158 (250)
T ss_pred ccchhhhhhhhcCCCCeEEEEECCCCCCCeeeeceeecHHH-HHHHhcCCeEecCCCCCCCccccCCCHHHHHhhhCccc
Confidence 89999999742 4689999999 999999999999996 89999999998653221123467899999999999999
Q ss_pred CcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhH---HHHHHHhhcccCccCchhhhhhhhhCCCCCChHHH
Q 023670 192 CILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYT---KERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQ 268 (279)
Q Consensus 192 CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~---~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~ 268 (279)
||+||.|+++||++.. +.|+||+. ..+ ++....++... ..++..+ +..++|.|++||+|+++||+||++ ..
T Consensus 159 CI~CG~C~saCP~~~~--~~f~Gp~~-~~~-~l~p~~~~~r~~~~~~~~~~~-~~~gv~~C~~Cg~Cs~VCPk~I~~-~~ 232 (250)
T PRK07570 159 CIGCGACVAACPNGSA--MLFTGAKV-SHL-ALLPQGQPERARRVRAMVAQM-DEEGFGNCTNTGECEAVCPKGISL-EN 232 (250)
T ss_pred cCCCcccccccCCccc--ccccchhh-hhh-hhCcccchhHHHHHHHHHHHH-hccCcccCcccCccccccCCCCCH-HH
Confidence 9999999999999863 46999865 333 33322222111 1122222 336899999999999999999998 47
Q ss_pred HHHHHHHHH
Q 023670 269 IINIKQLQL 277 (279)
Q Consensus 269 I~~lR~~~~ 277 (279)
|..+++.++
T Consensus 233 I~~l~r~~~ 241 (250)
T PRK07570 233 IARMNREYL 241 (250)
T ss_pred HHHHHHHHH
Confidence 777776654
No 14
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=100.00 E-value=9.2e-44 Score=347.64 Aligned_cols=214 Identities=36% Similarity=0.676 Sum_probs=191.6
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP 126 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~ 126 (279)
+++|+||||||+.+ .||||+|+|++++ |+||||||++++.+++|+|+|+.+|+.|+||+|.|+|||+++|||+|++.+
T Consensus 3 ~~~~~i~r~~~~~~-~~~~~~~~v~~~~-~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~~ 80 (486)
T PRK06259 3 MITITVKRFDPEKD-EPHFESYEVPVKE-GMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTINGEPVLACKTEVED 80 (486)
T ss_pred eEEEEEEecCCCCC-CceeEEEEEeCCC-CChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEECCeEecccccCCCC
Confidence 68999999999998 8999999999998 999999999999777999999999999999999999999999999999997
Q ss_pred CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcc
Q 023670 127 SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 127 g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~ 206 (279)
| ++|+|++ +|+++|||+|.+.|+.+++.+++|+.++. +.++++++.+.++++..||+||.|.++||++.
T Consensus 81 ~---~~i~~~~-~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~ 149 (486)
T PRK06259 81 G---MIIEPLD-FPVIKDLIVDREPYYKKLKSLRNYLQRKN-------EKITYPEDIEDIKKLRGCIECLSCVSTCPARK 149 (486)
T ss_pred C---CEEEecC-CcchhccccccHHHHHHHHhhcCCCCCCc-------cCCCCHHHHHHHhCchhcccCccccccCCCCc
Confidence 5 8999999 99999999999999999999999987542 34578899999999999999999999999997
Q ss_pred cCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCCh-HHHHHHHHHHHHh
Q 023670 207 WTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNP-GKQIINIKQLQLK 278 (279)
Q Consensus 207 ~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~-~~~I~~lR~~~~~ 278 (279)
. ++|.||+++..++++..+++++. +++.... ..++|.|++||+|..+||+||++ .++|..+|+.+.+
T Consensus 150 ~--~~~~gp~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~C~~C~~C~~~CP~gi~~~~~~i~~~R~~~~~ 217 (486)
T PRK06259 150 V--SDYPGPTFMRQLARFAFDPRDEG--DREKEAF-DEGLYNCTTCGKCVEVCPKEIDIPGKAIEKLRALAFK 217 (486)
T ss_pred c--ccCcCHHHHHHHHHHhhCCcchh--hHHHHHh-cCCCcCCCCcCcccCcCCCCCCchHHHHHHHHHHHHH
Confidence 5 57999999999998888877653 2333222 24799999999999999999998 9999999988764
No 15
>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B ....
Probab=100.00 E-value=1.7e-38 Score=251.04 Aligned_cols=105 Identities=50% Similarity=0.889 Sum_probs=91.1
Q ss_pred EEEEEeeCCCCC-CCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCC
Q 023670 49 KFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS 127 (279)
Q Consensus 49 ~~~i~R~~p~~~-~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g 127 (279)
||+||||||+.+ .+||||+|+|++++ ++||||||.+|++++||+|+|+++|++|+||+|+|+|||+++|||+|++.+.
T Consensus 1 t~~I~R~~~~~~~~~~~~~~y~v~~~~-~~tVLd~L~~Ik~~~D~sLafr~sCr~giCGsCam~ING~~~LAC~t~v~~~ 79 (110)
T PF13085_consen 1 TLRIFRFDPESDEGEPYYQEYEVPVEP-GMTVLDALNYIKEEQDPSLAFRYSCRSGICGSCAMRINGRPRLACKTQVDDL 79 (110)
T ss_dssp EEEEEE--TTSTTSS-EEEEEEEEGGS-TSBHHHHHHHHHHHT-TT--B--SSSSSSSSTTEEEETTEEEEGGGSBGGGC
T ss_pred CEEEEEcCCCCCCCCCeEEEEEecCCC-CCcHHHHHHHHHhccCCCeEEEecCCCCCCCCCEEEECCceecceeeEchhc
Confidence 699999999886 49999999999998 9999999999999999999999999999999999999999999999999975
Q ss_pred C----CceEEeeCCCCcchhhhhhccchhhh
Q 023670 128 G----SASTITPLPHMFVIKDLVVDMTNFYN 154 (279)
Q Consensus 128 ~----~~~~iepl~~~~vikDLvvD~~~~~~ 154 (279)
. +.++||||++|||||||+||++.||+
T Consensus 80 ~~~~~~~i~IePL~~fpVirDLvVD~~~f~e 110 (110)
T PF13085_consen 80 IEKFGNVITIEPLPNFPVIRDLVVDMSPFFE 110 (110)
T ss_dssp TTSETBEEEEEESTTSBEEETTEEETHHHHH
T ss_pred cCCCcceEEEEECCCCCcceeCceeChHHcC
Confidence 3 35999999999999999999999985
No 16
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=99.84 E-value=7e-23 Score=201.95 Aligned_cols=178 Identities=21% Similarity=0.308 Sum_probs=115.1
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCeeeccccccccCCCC----ceEEeeCCCCcchhh
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGCNGLACLTKISPSGS----ASTITPLPHMFVIKD 144 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~~~lAC~t~v~~g~~----~~~iepl~~~~vikD 144 (279)
+++++ |+|||+||++.+ .++|+|||+.+- +.+.|.+|.|+|||+.+.||+|++++|.. +.+|..++ ...-|
T Consensus 15 ~~v~~-G~tiL~a~~~~g-I~iP~iCy~~~l~pi~sCd~ClVEidG~l~rsCsT~v~dGm~v~t~s~rvk~~r--~~~md 90 (978)
T COG3383 15 IEVEE-GTTILRAANRNG-IEIPHICYHESLGPIGSCDTCLVEIDGKLVRSCSTPVEDGMVVRTNSERVKEAR--REAMD 90 (978)
T ss_pred EecCC-ChHHHHHHHhcC-CcccceeccCCCCcccccceEEEEecCceeccccccccCCcEEecccHHHHHHH--HHHHH
Confidence 45567 999999999999 479999999995 67999999999999999999999999832 22222222 12335
Q ss_pred hhhccchhhh----------hhhccccccc-cCCCCCCCCC--CCCCChhhHhhhcccccCcccCcccCCCCCcccCCCc
Q 023670 145 LVVDMTNFYN----------QYKSIEPWLK-RKNPPPMPGK--EIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEA 211 (279)
Q Consensus 145 LvvD~~~~~~----------~~~~~~p~l~-~~~~~~~~~~--~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~ 211 (279)
+++..|.+++ .++...-.+. .+..++-.++ .+..+...+..+++.++||+||+|+.+|...+.+.
T Consensus 91 ~~l~nH~LyC~vCd~nnGdCelh~~~~~~gl~~q~y~y~~k~~~~~~Des~Pfy~ydp~qCIlCgRCVeaCqevqv~e-- 168 (978)
T COG3383 91 RILSNHPLYCTVCDNNNGDCELHNMVMALGLTEQRYPYEEKNPPYPKDESNPFYIYDPNQCILCGRCVEACQEVQVNE-- 168 (978)
T ss_pred HHHhcCCcCccccCCCCCCchHHHHHHHhCCCccccCccccCCCCCcccCCCeEEecchheeehhHHHHHHHhhhcee--
Confidence 5555555554 3333322222 1222221222 23333334567789999999999999999776542
Q ss_pred ccCHHHHHHHHHHhhcCcchhHHHHHHHh-hcccCccCchhhhhhhhhCCCCCChH
Q 023670 212 YLGPAALLHANRWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPG 266 (279)
Q Consensus 212 ~~gP~~l~~a~r~~~d~r~~~~~erl~~l-~~~~~~~~C~~Cg~C~~vCP~gi~~~ 266 (279)
.++ .+.+.+. .|+.+. ......+.|++||+|++|||+++-..
T Consensus 169 aL~-----------i~w~~~~--pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALme 211 (978)
T COG3383 169 ALT-----------IDWRGED--PRVIWDNDVPINESSCVSCGACVTVCPVNALME 211 (978)
T ss_pred EEE-----------eecccCC--cceecCCCCccccccccccCccceecchhhhhh
Confidence 111 1111111 133222 23457799999999999999987443
No 17
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=99.83 E-value=1.9e-21 Score=199.05 Aligned_cols=132 Identities=17% Similarity=0.231 Sum_probs=86.1
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECCeeeccccccccCCCCce----EEeeCCCCcchhh
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGCNGLACLTKISPSGSAS----TITPLPHMFVIKD 144 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG~~~lAC~t~v~~g~~~~----~iepl~~~~vikD 144 (279)
|++++ |+|||+|++++| ..+|+|||+.+|. .|.||+|+|+|||++++||.|++.+|.... .+...| ..+-.
T Consensus 11 v~~~~-G~til~aa~~~g-i~iP~lC~~~~~~~~G~Cr~C~VeV~G~~~~AC~t~v~dGM~V~T~s~~v~~~R--k~vle 86 (819)
T PRK08493 11 CEAQE-GEYILNVARRNG-IFIPAICYLSGCSPTLACRLCMVEADGKRVYSCNTKAKEGMNILTNTPNLMDER--NAIMQ 86 (819)
T ss_pred EEeCC-CCHHHHHHHHcC-CccccccccCCCCCCccccceEEEECCEEeccccCCCCCCCEEEecCHHHHHHH--HHHHH
Confidence 45557 999999999998 4799999999996 599999999999999999999999883222 222222 22333
Q ss_pred hhhccchhhh---------hhhccccccccC-CCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcc
Q 023670 145 LVVDMTNFYN---------QYKSIEPWLKRK-NPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 145 LvvD~~~~~~---------~~~~~~p~l~~~-~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~ 206 (279)
|++..+++.+ .||.+.-++... .+++....... .+......++.++||.||+|+++|+..+
T Consensus 87 ~ll~~HpldC~~Cd~~geCeLQ~~a~~~gv~~~~~~~~~~~~~-~~~~~~I~~D~~rCI~C~RCVr~C~ev~ 157 (819)
T PRK08493 87 TYDVNHPLECGVCDKSGECELQNFTHEMGVNHQPYAIKDTHKP-HKHWGKINYDPSLCIVCERCVTVCKDKI 157 (819)
T ss_pred HHHhccCCCCCcCCCCCCcHHHHHHHHhCCCCCcCcccccccc-ccCCCcEEechhhcccccHHHhhCcccc
Confidence 4444444432 355544333221 11110001111 1112245578999999999999999765
No 18
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=99.83 E-value=7.8e-22 Score=178.55 Aligned_cols=134 Identities=13% Similarity=0.136 Sum_probs=88.2
Q ss_pred Eec-cCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCe--eeccccccccCCC----CceEEeeCCCCcc
Q 023670 70 INL-KECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGC--NGLACLTKISPSG----SASTITPLPHMFV 141 (279)
Q Consensus 70 v~~-~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~--~~lAC~t~v~~g~----~~~~iepl~~~~v 141 (279)
|++ ++ |+|||||++++| ..+|+|||+... ..|.|+.|+|+|+|+ .+.||.|++.+|. ++.++...| +.
T Consensus 78 VeV~~~-G~TILeAAr~~G-I~IPtLCy~~~L~p~G~CRlClVEVeG~~~lv~AC~tpV~eGM~V~T~Se~v~~~R--k~ 153 (297)
T PTZ00305 78 VEIIPQ-EENLLEVLEREG-IRVPKFCYHPILSVAGNCRMCLVQVDGTQNLVVSCATVALPGMSIITDSRLVRDAR--EG 153 (297)
T ss_pred EEecCC-CChHHHHHHHcC-CCcCccccCCCCCCCCccceeEEEECCCcCcccccCCcCCCCCEEEeCCHHHHHHH--HH
Confidence 455 56 899999999999 579999999997 579999999999996 5679999999983 333333333 23
Q ss_pred hhhhhhccchhhh---------hhhccccccccC-CCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCccc
Q 023670 142 IKDLVVDMTNFYN---------QYKSIEPWLKRK-NPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWW 207 (279)
Q Consensus 142 ikDLvvD~~~~~~---------~~~~~~p~l~~~-~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~ 207 (279)
+-.|++..++..+ +||.+.-++... .+++...+.......+.....++++||+||+|+++|...+.
T Consensus 154 vLElLLs~Hp~DC~~C~k~G~CeLQdla~~~Gv~~~Rf~~~~~~~~~~~~~p~i~~D~nKCIlCgRCVRaC~EVqg 229 (297)
T PTZ00305 154 NVELILINHPNDCPICEQATNCDLQNVSMNYGTDIPRYKEDKRAVQDFYFDPQTRVVLNRCIHCTRCVRFLNEHAQ 229 (297)
T ss_pred HHHHHHhcCCCcCCcccCcCCcHHHHHHHHhCCCCccCCcccccccccCCCCceeecCCcCcCccHHHHHHHHhhC
Confidence 4455555555432 466655443322 22211111111111223344678999999999999998763
No 19
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=99.79 E-value=1.4e-20 Score=190.92 Aligned_cols=175 Identities=14% Similarity=0.145 Sum_probs=106.9
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCe---eeccccccccCCC----CceEEeeCCCCc
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGC---NGLACLTKISPSG----SASTITPLPHMF 140 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~---~~lAC~t~v~~g~----~~~~iepl~~~~ 140 (279)
+|++++ |+|||||++++| ..+|+|||+... ..|.|++|+|+|+|. ++.||.|++.+|. ++..+...| .
T Consensus 10 ~v~v~~-g~til~a~~~~g-i~IP~lCy~~~l~~~g~Cr~ClVev~~~~~~~~~sC~~~v~~gm~v~T~s~~v~~~r--~ 85 (687)
T PRK09130 10 EIEVPD-GYTLLQACEAAG-AEIPRFCYHERLSIAGNCRMCLVEVKGGPPKPVASCAMPVGEGMVIFTNTPMVKKAR--E 85 (687)
T ss_pred EEEeCC-CCHHHHHHHHcC-CCcCcccCCCCCCCCCCCCCCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHH--H
Confidence 356667 999999999999 479999999986 569999999999986 6779999999983 222222222 2
Q ss_pred chhhhhhccchhhh---------hhhccccccc-cCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCC
Q 023670 141 VIKDLVVDMTNFYN---------QYKSIEPWLK-RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE 210 (279)
Q Consensus 141 vikDLvvD~~~~~~---------~~~~~~p~l~-~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~ 210 (279)
.+-++++..|+..+ .||++.-.+. ...++....+....+........++++||+|++|+++|-.....+
T Consensus 86 ~~le~ll~~Hp~dC~~C~~~g~C~Lq~~~~~~g~~~~r~~~~~~~~~~~~~~p~i~~~~~rCI~C~rCvr~c~ev~g~~- 164 (687)
T PRK09130 86 GVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDTSRYHENKRAVEDKYMGPLVKTVMTRCIHCTRCVRFATEVAGVP- 164 (687)
T ss_pred HHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHhCCCCCCCCccccccCcCCCCCcEEEecccCCcccHHHHHHHhhcCCc-
Confidence 33344555555443 3554432222 222222111111111112234567899999999999998765321
Q ss_pred cccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 211 AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 211 ~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
-+| + .+|+.. .++.... .....|..||+|+++||+|+=
T Consensus 165 -~l~---------~--~~rg~~--~~i~~~~--~~~~~~~~~G~cv~~CPvgAl 202 (687)
T PRK09130 165 -ELG---------A--IGRGED--MEITTYL--EQALTSELSGNVIDLCPVGAL 202 (687)
T ss_pred -eEE---------e--eecCCC--CEEccCC--CCCccccccccHHhhCCCccc
Confidence 111 1 122221 1111111 134468899999999999983
No 20
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=99.78 E-value=2.3e-20 Score=187.18 Aligned_cols=174 Identities=19% Similarity=0.272 Sum_probs=103.5
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC--eeeccccccccCCCC----ceEEeeCCCCcc
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG--CNGLACLTKISPSGS----ASTITPLPHMFV 141 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG--~~~lAC~t~v~~g~~----~~~iepl~~~~v 141 (279)
+|++++ |.|||+|++++| .++|+|||+..|. .|.||+|+|+|+| +++.||.|++.+|.. +..+.-.+ .-
T Consensus 10 ei~v~~-g~tvLqAa~~aG-i~IP~fCyh~~ls~~GaCRmClVEveg~~k~~~SC~tpv~dGM~I~T~s~~vk~~R--~~ 85 (693)
T COG1034 10 EIEVPE-GETVLQAAREAG-IDIPTFCYHPRLSIAGACRMCLVEVEGAPKLVASCATPVTDGMVISTNSEEVKKAR--EG 85 (693)
T ss_pred EEecCC-CcHHHHHHHHcC-CCCCcccccCCCCcccceeEEEEEecCCCccccccccccCCCeEEecCCHHHHHHH--HH
Confidence 356667 899999999999 4799999999985 5999999999999 788999999999822 11111111 11
Q ss_pred hhhhhhccchhhh---------hhhcccc-ccccCCCCCCCCCCCCCChhh-HhhhcccccCcccCcccCCCCCcccCCC
Q 023670 142 IKDLVVDMTNFYN---------QYKSIEP-WLKRKNPPPMPGKEIPQSKKD-RAKLDGMYECILCACCSTSCPSYWWTSE 210 (279)
Q Consensus 142 ikDLvvD~~~~~~---------~~~~~~p-~l~~~~~~~~~~~~~~~s~~~-~~~~~~~~~CI~CG~C~~~CP~~~~~~~ 210 (279)
+-.+++..|++.+ .||++.- |-....++....+.+ ..++. .....++++||+|++|++.|-.+...
T Consensus 86 vmE~LLiNHPlDCpiCD~gGeCeLQD~a~~~G~~~sr~~~~kr~~-~~~~~gp~v~~dm~RCI~C~RCVR~c~eiaG~-- 162 (693)
T COG1034 86 VMEFLLINHPLDCPVCDKGGECELQDLAVKYGVSHSRYRETKRTH-RDKDLGPLVKYDMNRCILCTRCVRFCKEIAGT-- 162 (693)
T ss_pred HHHHHHhcCCCCCCccCCCCCchhHHHHHHhCCCccccccccccc-ccccccchhhcccccceechhhHHhhhhhcCc--
Confidence 2344455556554 3444431 111122211011111 11111 12237899999999999999876532
Q ss_pred cccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 211 AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 211 ~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
..+. ++ +|++.. .+-...+ ..+.=..||+|+.+||+|+=
T Consensus 163 -----~~l~----~~--~rg~~~--~i~t~~~--~~l~se~cGncv~vCPvGAL 201 (693)
T COG1034 163 -----HELG----VI--KRGENS--EIGTYLD--QPLESELCGNCVDVCPVGAL 201 (693)
T ss_pred -----cccc----ee--ecCCCc--eeecccc--cccccccccceeeecccccc
Confidence 1111 11 122111 0101111 12222789999999999984
No 21
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=99.77 E-value=3.6e-20 Score=185.86 Aligned_cols=176 Identities=14% Similarity=0.165 Sum_probs=107.9
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCe---eeccccccccCCCC----ceEEeeCCCC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGC---NGLACLTKISPSGS----ASTITPLPHM 139 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~---~~lAC~t~v~~g~~----~~~iepl~~~ 139 (279)
.+|++++ |+|||+|++++|+ .+|+|||+... ..|.|+.|.|+|+|. .+.||.|++.+|.. +.++.-.|
T Consensus 6 ~~~~~~~-g~~il~a~~~~gi-~ip~~C~~~~l~~~g~Cr~C~v~v~g~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r-- 81 (603)
T TIGR01973 6 KELEVPK-GTTVLQACLSAGI-EIPRFCYHEKLSIAGNCRMCLVEVEKFPDKPVASCATPVTDGMKISTNSEKVKKAR-- 81 (603)
T ss_pred EEEEeCC-CCHHHHHHHHcCC-CccccCCCCCCCCCCccccCEEEECCCCCCcccccCCCCCCCCEEEeCCHHHHHHH--
Confidence 3466677 9999999999994 79999999986 479999999999995 57899999999832 22222222
Q ss_pred cchhhhhhccchhhh---------hhhccccccc-cCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCC
Q 023670 140 FVIKDLVVDMTNFYN---------QYKSIEPWLK-RKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTS 209 (279)
Q Consensus 140 ~vikDLvvD~~~~~~---------~~~~~~p~l~-~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~ 209 (279)
..+-+|++..|+..+ +||++.-.+. ...+++...+.............+.++||+||+|+++|-.....+
T Consensus 82 ~~~~e~ll~~h~~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCI~C~rCvr~c~e~~g~~ 161 (603)
T TIGR01973 82 EGVMEFLLINHPLDCPICDQGGECDLQDQAVMYGSDRSRFREKKRTVENKYLGPLIKTEMTRCIHCTRCVRFANEVAGVE 161 (603)
T ss_pred HHHHHHHHhcCCCCCCcCCCCCCChHHHHHHHhCCCCCCCCcccccCCCCCCCCCeEecCCcCccccHHHHHHHHhhCCc
Confidence 233444554454432 4555432222 222222111112111123345678999999999999998654321
Q ss_pred CcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 210 EAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 210 ~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
+ +.+. +|+.. .++... ......|..||+|+++||+|+=
T Consensus 162 -------~----l~~~--~rg~~--~~i~~~--~~~~~~~~~cg~cv~vCP~GAl 199 (603)
T TIGR01973 162 -------D----LGVI--GRGNN--VEIGTY--EGKTLESELSGNLIDICPVGAL 199 (603)
T ss_pred -------e----EEEe--ccCCC--CEEecC--CCCCCCCcccCChHhhCCcccc
Confidence 1 1111 12211 111111 1133468899999999999983
No 22
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=99.75 E-value=1.5e-19 Score=186.37 Aligned_cols=185 Identities=16% Similarity=0.225 Sum_probs=111.1
Q ss_pred ceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECCee--eccccc
Q 023670 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCN--GLACLT 122 (279)
Q Consensus 46 ~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG~~--~lAC~t 122 (279)
.+++|.| |- ++ |++++ |+|||+|++.+|+ .+|+|||+.. ...|.|+.|.|+|||.+ +.||.|
T Consensus 3 ~~v~~~i---dg--------~~--~~~~~-g~til~aa~~~gi-~ip~~C~~~~l~~~g~Cr~C~Vev~g~~~~~~aC~t 67 (797)
T PRK07860 3 DLVTLTI---DG--------VE--VSVPK-GTLVIRAAELLGI-QIPRFCDHPLLDPVGACRQCLVEVEGQRKPQASCTT 67 (797)
T ss_pred ceEEEEE---CC--------EE--EEeCC-CChHHHHHHHcCC-CCCeecCCCCCCCCcccCccEEEECCCcccccccCC
Confidence 4677777 42 44 45567 9999999999984 7999999998 56899999999999964 569999
Q ss_pred cccCCCCceE------EeeCCCCcchhhhhhccchhhh---------hhhcccccccc-CCCCCCCCCCCCCC-hhhHhh
Q 023670 123 KISPSGSAST------ITPLPHMFVIKDLVVDMTNFYN---------QYKSIEPWLKR-KNPPPMPGKEIPQS-KKDRAK 185 (279)
Q Consensus 123 ~v~~g~~~~~------iepl~~~~vikDLvvD~~~~~~---------~~~~~~p~l~~-~~~~~~~~~~~~~s-~~~~~~ 185 (279)
++.+|....+ +.-.+ ..+-+|++..|++.+ +||++.-.+.. ..++....+..... +.....
T Consensus 68 ~v~~gm~V~t~~~s~~v~~~r--~~~le~ll~~hp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i 145 (797)
T PRK07860 68 TVTDGMVVKTQLTSPVADKAQ--HGVMELLLINHPLDCPVCDKGGECPLQNQAMSNGRAESRFTDVKRTFPKPINISTQV 145 (797)
T ss_pred CCCCCcEEEeCCCCHHHHHHH--HHHHHHHHhcCCCCCCCCCCCCCcHHHHHHHHhCCCCccCccccccCCCCCCCCcce
Confidence 9999832221 12122 233344444444443 35554322221 11221001111100 111235
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
..+.++||+|++|+++|-.....+ .++ +. +|+.. .++... ....+.|..||+|+++||+|+=
T Consensus 146 ~~d~~rCI~C~rCvr~c~ev~g~~--~l~---------~~--~rg~~--~~i~~~--~~~~~~~~~cG~cv~vCP~GAl 207 (797)
T PRK07860 146 LLDRERCVLCARCTRFSDQIAGDP--FID---------LQ--ERGAL--QQVGIY--EGEPFQSYFSGNTVQICPVGAL 207 (797)
T ss_pred eecccccccCcHHHHHHHhhcCCc--EEE---------ee--ecCCC--CEEecC--CCCCcCccccCCchhhCCcccc
Confidence 578999999999999998764321 111 11 22211 111111 1134678899999999999984
No 23
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=99.74 E-value=1.7e-19 Score=161.13 Aligned_cols=177 Identities=21% Similarity=0.342 Sum_probs=102.0
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECCee--eccccccccCCCCceEEee-CCC-Ccchhh
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCN--GLACLTKISPSGSASTITP-LPH-MFVIKD 144 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG~~--~lAC~t~v~~g~~~~~iep-l~~-~~vikD 144 (279)
|++++ |.|||+|++++| ..+|++|++.+ |..|.||.|.|+|||.. ++||.|++.+|....+-.+ +.. ...+.+
T Consensus 13 ~~~~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~V~v~g~~~~~~aC~t~v~~Gm~v~t~~~~~~~~rk~~l~ 90 (234)
T PRK07569 13 VSARE-GETLLEAAREAG-IPIPTLCHLDGLSDVGACRLCLVEIEGSNKLLPACVTPVAEGMVVQTNTPRLQEYRRMIVE 90 (234)
T ss_pred EEeCC-CCHHHHHHHHcC-CCCCcCcCCCCCCCCCccCCcEEEECCCCccccCcCCCCCCCCEEEECCHHHHHHHHHHHH
Confidence 45557 999999999998 47899999887 77899999999999964 5799999998732221111 111 123455
Q ss_pred hhhccchhhh---------hhhccccccccC-CCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccC
Q 023670 145 LVVDMTNFYN---------QYKSIEPWLKRK-NPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLG 214 (279)
Q Consensus 145 LvvD~~~~~~---------~~~~~~p~l~~~-~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~g 214 (279)
|+.+.++..+ .++.+.-++... ..++........+........+.++||.||+|+.+||..... . .
T Consensus 91 ~ll~~h~~~C~~C~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~d~s~~~i~~d~~kCi~Cg~Cv~aC~~i~~~-~-~-- 166 (234)
T PRK07569 91 LLFAEGNHVCAVCVANGNCELQDLAIEVGMDHVRFPYLFPRRPVDISHPRFGIDHNRCVLCTRCVRVCDEIEGA-H-T-- 166 (234)
T ss_pred HHHHhccccCcccCCCCCcHHHHHHHHhCCCCcccCcccCCcccccCCCcEEeehhhCcCccHHHHHHHHhcCC-c-e--
Confidence 5555554432 344443332211 111100111111112233456779999999999999953211 0 0
Q ss_pred HHHHHHHHHHhhcCcchhHHHHHH-Hhhccc-CccCchhhhhhhhhCCCCC
Q 023670 215 PAALLHANRWISDSRDEYTKERLE-AIDDEF-KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 215 P~~l~~a~r~~~d~r~~~~~erl~-~l~~~~-~~~~C~~Cg~C~~vCP~gi 263 (279)
+...++... .++. .+.... ....|+.||.|+.+||+|+
T Consensus 167 ---------~~~~~~g~~--~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gA 206 (234)
T PRK07569 167 ---------WDVAGRGAK--SRVITDLNQPWGTSETCTSCGKCVQACPTGA 206 (234)
T ss_pred ---------eeecccCCc--ceEeecCCccccccccccchHHHHHhCCCCc
Confidence 000011100 0000 011001 2358999999999999987
No 24
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=99.74 E-value=2.7e-19 Score=184.20 Aligned_cols=175 Identities=16% Similarity=0.178 Sum_probs=105.9
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCee--eccccccccCCCCceE----EeeCCCCcch
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGCN--GLACLTKISPSGSAST----ITPLPHMFVI 142 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~~--~lAC~t~v~~g~~~~~----iepl~~~~vi 142 (279)
|++++ |+|||+|++++| .++|+|||+... +.|.|+.|.|+|||.+ +.||.|++.+|....+ +.-.|+ .+
T Consensus 11 ~~~~~-g~~il~a~~~~g-~~ip~~c~~~~~~~~~~C~~C~v~v~~~~~~~~aC~~~~~~gm~v~t~~~~~~~~r~--~~ 86 (776)
T PRK09129 11 VEVPE-GSMVIEAADKAG-IYIPRFCYHKKLSIAANCRMCLVEVEKAPKPLPACATPVTDGMKVFTRSEKALKAQK--SV 86 (776)
T ss_pred EEeCC-CCHHHHHHHHcC-CCCCcccCCCCCCCCCCcceeEEEECCCCCcCcccCCCCCCCCEEEcCCHHHHHHHH--HH
Confidence 44467 999999999999 478999999986 5799999999999964 6799999999833222 222222 23
Q ss_pred hhhhhccchhh---------hhhhcccccccc-CCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcc
Q 023670 143 KDLVVDMTNFY---------NQYKSIEPWLKR-KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAY 212 (279)
Q Consensus 143 kDLvvD~~~~~---------~~~~~~~p~l~~-~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~ 212 (279)
-+|++..|+.. ++||++.-.+.. ..++....+.............+.++||+||+|+++|-.....+
T Consensus 87 l~~ll~~h~~~C~~c~~~g~C~Lq~~a~~~g~~~~~~~~~~~~~~~~~~~p~i~~d~~rCi~C~rCvr~c~ev~g~~--- 163 (776)
T PRK09129 87 MEFLLINHPLDCPICDQGGECQLQDLAVGYGRSTSRYTEEKRVVFDKDLGPLISTEMTRCIHCTRCVRFGQEIAGVM--- 163 (776)
T ss_pred HHHHHhcCCCCcccCCCCCCCHHHHHHHHhCCCCCccccccccCCccCCCcceeecccccccCcHHHHHHHHhcCCc---
Confidence 34444444433 356655433322 22221011111111122334568899999999999998764321
Q ss_pred cCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCCh
Q 023670 213 LGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNP 265 (279)
Q Consensus 213 ~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~ 265 (279)
++. +. +|+.. .++.... .....|..||+|+.+||+|+=.
T Consensus 164 ----~l~----~~--~rg~~--~~i~~~~--~~~~~~~~cg~cv~~CP~GAl~ 202 (776)
T PRK09129 164 ----ELG----MM--GRGEH--SEITTYV--GKTVDSELSGNMIDLCPVGALT 202 (776)
T ss_pred ----eee----ee--ccCCC--CEEcCCC--CCCccCcccCCchhhCCccccc
Confidence 111 11 22211 1121111 1344688999999999999843
No 25
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=99.66 E-value=1.2e-17 Score=173.50 Aligned_cols=173 Identities=14% Similarity=0.159 Sum_probs=103.7
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEE-----CC--eeeccccccccCCCCceEEeeCC----
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNI-----DG--CNGLACLTKISPSGSASTITPLP---- 137 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~i-----nG--~~~lAC~t~v~~g~~~~~iepl~---- 137 (279)
+++++ |+|||+|++.+| ..+|++|++... ..|.|++|.|+| +| +.++||.|++.+| +.|+--+
T Consensus 11 ~~~~~-g~til~a~~~~g-i~ip~~C~~~~~~~~G~C~~C~v~v~~g~~~~~~~~~~aC~~~v~~g---m~v~t~~~~~~ 85 (847)
T PRK08166 11 YEVNG-ADNLLEACLSLG-IDIPYFCWHPALGSVGACRQCAVKQYQNPEDTRGRLVMSCMTPATDG---TFISIDDPEAK 85 (847)
T ss_pred EEeCC-CCHHHHHHHHcC-CCCCccccCCCCCCCCccCCCeEEEeecCccCCCCcccCcCCCCCCC---CEEEeCCHHHH
Confidence 44457 899999999999 478999998876 469999999999 23 4678999999987 2332211
Q ss_pred -CCcchhhhhhccchhhh---------hhhcccccccc-CCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcc
Q 023670 138 -HMFVIKDLVVDMTNFYN---------QYKSIEPWLKR-KNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 138 -~~~vikDLvvD~~~~~~---------~~~~~~p~l~~-~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~ 206 (279)
....+-+|++..|+..+ .||++.-++.. ..++....+.+..+........++++||+||+|+++|..+.
T Consensus 86 ~~r~~~~e~ll~~hp~dc~~c~~~g~c~lq~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~~d~~rCi~C~rCVr~c~e~~ 165 (847)
T PRK08166 86 AFRASVVEWLMTNHPHDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRYYKDYA 165 (847)
T ss_pred HHHHHHHHHHHhcCCCCCCccCCCCCchHHHHHHHhCCCCccCCCcCccccccCCCCceEecCCcCccccHHHHHHHhhc
Confidence 11223444444444433 35555433322 22221011111111122345678999999999999999775
Q ss_pred cCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 207 WTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 207 ~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
... .+| + .+++.. ..+... ..+...|.+||+|+++||+|+=
T Consensus 166 g~~--~l~---------~--~~~~~~--~~~~~~--~~~~~~~~~~G~cv~vCP~GAl 206 (847)
T PRK08166 166 GGT--DLG---------V--YGAHDN--VYFGRP--EDGTLESEFSGNLVEVCPTGVF 206 (847)
T ss_pred Ccc--eEE---------E--eecCce--eEecCC--CCCcccChhhCChHhhCCchhc
Confidence 321 121 1 122211 011101 1234578999999999999983
No 26
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=99.43 E-value=1.6e-13 Score=131.61 Aligned_cols=95 Identities=20% Similarity=0.477 Sum_probs=74.5
Q ss_pred CCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhh
Q 023670 177 PQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCA 256 (279)
Q Consensus 177 ~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~ 256 (279)
.+++++....+.+..||+||.|..+||+|..++.++.||++.+.+++.+.+++... + .....+|.|++||+|+
T Consensus 10 ~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~--~-----~~~~~~~~C~~C~~C~ 82 (407)
T PRK11274 10 RDTPEGEEAEAILRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVT--E-----KTQLHLDRCLTCRNCE 82 (407)
T ss_pred cCChhhhHhHHHHHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccc--h-----hhccccccCccccchh
Confidence 44555555666788999999999999999887778999999888777766654211 1 1123589999999999
Q ss_pred hhCCCCCChHHHHHHHHHHHHh
Q 023670 257 RACPKGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 257 ~vCP~gi~~~~~I~~lR~~~~~ 278 (279)
.+||+||++.++|..+|..+.+
T Consensus 83 ~~CP~~v~~~~li~~~r~~~~~ 104 (407)
T PRK11274 83 TTCPSGVQYGRLLDIGRKVVEE 104 (407)
T ss_pred hhCCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988876643
No 27
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=99.33 E-value=1.4e-12 Score=111.81 Aligned_cols=78 Identities=24% Similarity=0.554 Sum_probs=61.5
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHH
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGK 267 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~ 267 (279)
.+..|++||.|+++||+.... -++|+.+++..+. +.. + .+..+..+|.|++|+.|...||.|+++.+
T Consensus 37 ~l~~C~QCG~CT~sCPs~r~t---~y~pR~ii~~~~~---g~~----d---~il~~~~lW~C~tCytC~eRCPr~v~i~~ 103 (195)
T COG1150 37 YLEGCYQCGTCTGSCPSGRFT---DYSPRKIIRKARL---GLV----D---LILSSESLWACVTCYTCTERCPRGVKIVE 103 (195)
T ss_pred hHhHhhccCcccCCCCCcccC---CCCHHHHHHHHHc---ccH----H---HHhcCCcceeeeechhhhhhCCCCCCHHH
Confidence 456799999999999998653 3689888875543 111 1 12224579999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 023670 268 QIINIKQLQLK 278 (279)
Q Consensus 268 ~I~~lR~~~~~ 278 (279)
+|..||+..++
T Consensus 104 vv~~lR~~a~k 114 (195)
T COG1150 104 VVKALRNIAVK 114 (195)
T ss_pred HHHHHHHHHHH
Confidence 99999998876
No 28
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=99.28 E-value=5.6e-12 Score=104.64 Aligned_cols=76 Identities=24% Similarity=0.500 Sum_probs=53.8
Q ss_pred ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHH
Q 023670 190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQI 269 (279)
Q Consensus 190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I 269 (279)
..||+||.|+++||++... . +.|+.+.+. ..++... + +..+..+|.|++||.|..+||+||++.++|
T Consensus 2 ~~Ci~CG~C~~~CP~~~~~--~-~~~~~~~~~---~~~g~~~---~----~~~~~~~~~C~~Cg~C~~~CP~~i~~~~~i 68 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRT--S-YRTRLIIRK---ALLGLKD---E----VISDDDLWMCTTCYTCQERCPRDVKITDII 68 (144)
T ss_pred ccccCCCCCcCcCCCcccc--C-CCHHHHHHH---HHccchh---h----hccCCCCCcCcCcCchhhhcCCCCCHHHHH
Confidence 5799999999999987532 2 234444332 2222110 1 112247899999999999999999999999
Q ss_pred HHHHHHHHh
Q 023670 270 INIKQLQLK 278 (279)
Q Consensus 270 ~~lR~~~~~ 278 (279)
..+|+.+++
T Consensus 69 ~~~R~~~~~ 77 (144)
T TIGR03290 69 KALRNLAAK 77 (144)
T ss_pred HHHHHHHHH
Confidence 999987654
No 29
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=99.20 E-value=1.1e-11 Score=117.37 Aligned_cols=82 Identities=22% Similarity=0.515 Sum_probs=60.9
Q ss_pred hhcccccCcccCcccCCCCCcccCC-----CcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhC
Q 023670 185 KLDGMYECILCACCSTSCPSYWWTS-----EAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARAC 259 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~~~~~-----~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vC 259 (279)
.+.....||+||+|..+||+|+..+ ..|.||.+.+... +..+.+. .....+.|+.||.|.++|
T Consensus 303 ~~re~L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~--~~~g~~~----------~~~~~~~c~lcg~C~evC 370 (459)
T COG1139 303 EFREALRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSP--ILGGYDA----------AGDLPYACSLCGACTEVC 370 (459)
T ss_pred HHHHHHHhhcchHhhhcChhhhhccCeecccccCCcccceecc--hhcchhh----------ccccchhhccccCCCCcC
Confidence 3455678999999999999997533 4578887654321 1222111 123579999999999999
Q ss_pred CCCCChHHHHHHHHHHHHh
Q 023670 260 PKGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 260 P~gi~~~~~I~~lR~~~~~ 278 (279)
|+.|++.++|.++|+..++
T Consensus 371 Pv~Ipl~eli~~lR~~~~~ 389 (459)
T COG1139 371 PVKIPLPELIRKLRRVAAE 389 (459)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987654
No 30
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=99.19 E-value=2.4e-11 Score=117.42 Aligned_cols=81 Identities=19% Similarity=0.434 Sum_probs=61.5
Q ss_pred hcccccCcccCcccCCCCCcccCC-----CcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTS-----EAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP 260 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~-----~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP 260 (279)
+.+..+||+||.|..+||+|...+ ..|.||++.+... +.++.. .. ....+.|+.||.|..+||
T Consensus 289 ~~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~--~~~g~~--------~~--~~~~~~C~~Cg~C~~vCP 356 (432)
T TIGR00273 289 FREVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSP--LLGGYT--------DY--KHLPYLSSLCGACREVCP 356 (432)
T ss_pred hhhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHH--Hhcccc--------cc--cccCccchhhhhhhccCC
Confidence 667889999999999999997432 3588998765321 222211 01 124689999999999999
Q ss_pred CCCChHHHHHHHHHHHHh
Q 023670 261 KGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 261 ~gi~~~~~I~~lR~~~~~ 278 (279)
+||++.++|..+|+.+++
T Consensus 357 ~gI~~~~li~~~R~~~~~ 374 (432)
T TIGR00273 357 VKIPLPELIREHRSDKVE 374 (432)
T ss_pred CCCcHHHHHHHHHHHHHh
Confidence 999999999999998764
No 31
>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit. 4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.
Probab=99.18 E-value=4.2e-11 Score=99.41 Aligned_cols=86 Identities=19% Similarity=0.285 Sum_probs=68.3
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCCC---c
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM---F 140 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~~---~ 140 (279)
+.+++++++ ++++||+||+.. .-...+.+|.+|.||+|+|.|||+++.||.+++. +|.+..+||+|... .
T Consensus 9 ~~~~~~~~~-~~~Ll~~LR~~l----gltg~K~gC~~G~CGACtVlvdg~~v~SCl~~~~~~~G~~V~TiEgl~~~~~l~ 83 (148)
T TIGR03193 9 RWREDAVAD-NMLLVDYLRDTV----GLTGTKQGCDGGECGACTVLVDGRPRLACSTLAHRVAGRKVETVEGLATNGRLS 83 (148)
T ss_pred EEEEeecCC-CCcHHHHHHHhc----CCCCCCCCCCCCCCCCCEEEECCeEeeccHhhHhhcCCCcEEEeCCCCCCCCCC
Confidence 456778888 899999999843 1467889999999999999999999999999998 67788999999742 2
Q ss_pred chhhhhhccchhhhhh
Q 023670 141 VIKDLVVDMTNFYNQY 156 (279)
Q Consensus 141 vikDLvvD~~~~~~~~ 156 (279)
.++.-.++.+.+.+.|
T Consensus 84 pvq~af~~~~a~QCGf 99 (148)
T TIGR03193 84 RLQQAFHERLGTQCGF 99 (148)
T ss_pred HHHHHHHHcCCCcCCC
Confidence 3555566666665544
No 32
>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional
Probab=99.16 E-value=1.4e-10 Score=101.73 Aligned_cols=86 Identities=24% Similarity=0.413 Sum_probs=68.9
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---Cc
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---MF 140 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~~ 140 (279)
+.+++++++ ++||||+|++... -...+.+|++|.||+|.|.|||+++.||.+++. +|.+..+||.|.. +.
T Consensus 59 ~~~~~~v~~-~~tLLd~LR~~l~----ltGtK~GC~~G~CGACTVlVdG~~v~SCl~la~~~~G~~ItTiEGL~~~~~lh 133 (217)
T PRK11433 59 KTEQLEVDT-RTTLLDALREHLH----LTGTKKGCDHGQCGACTVLVNGRRLNACLTLAVMHQGAEITTIEGLGSPDNLH 133 (217)
T ss_pred EEEEEecCC-CCcHHHHHHHhcC----CCCCCCCCCCCCcCceEEEECCEEeeeeeeehhhcCCCEEEEeCCcCCCCCCC
Confidence 567788888 8999999998542 244667899999999999999999999999995 7888889999974 23
Q ss_pred chhhhhhccchhhhhh
Q 023670 141 VIKDLVVDMTNFYNQY 156 (279)
Q Consensus 141 vikDLvvD~~~~~~~~ 156 (279)
.++.-.++.+.+.+.|
T Consensus 134 pvQ~Af~~~~a~QCGy 149 (217)
T PRK11433 134 PMQAAFVKHDGFQCGY 149 (217)
T ss_pred HHHHHHHHcCCCcCCC
Confidence 3566667777776654
No 33
>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.15 E-value=2.9e-11 Score=91.15 Aligned_cols=58 Identities=29% Similarity=0.527 Sum_probs=42.9
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCcccc----CC-CCCCccCeeEEEECCee-eccccccccCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFR----RS-CREGICGSCAMNIDGCN-GLACLTKISPS 127 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~----~~-c~~g~CG~C~v~inG~~-~lAC~t~v~~g 127 (279)
+.|++. + |.|||+||.++| ..+|++|+. .. |..|.|+.|.|+|||++ ++||.|++.+|
T Consensus 11 ~~v~~~--~-G~til~al~~~g-i~ip~~c~~~~~r~~~~~~g~C~~C~Vev~g~~~v~AC~t~v~~G 74 (82)
T PF13510_consen 11 KPVEVP--P-GETILEALLAAG-IDIPRLCYHGRPRGGLCPIGSCRLCLVEVDGEPNVRACSTPVEDG 74 (82)
T ss_dssp EEEEEE--E-T-BHHHHHHHTT---B-EETTTS-EEBSSSSSTT-SS-EEEESSEEEEETTT-B--TT
T ss_pred EEEEEc--C-CCHHHHHHHHCC-CeEEEeeeccCcccccCCccccceEEEEECCCcceEcccCCCcCC
Confidence 555554 6 899999999999 478999997 44 89999999999999987 89999999987
No 34
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=99.15 E-value=4.1e-11 Score=114.43 Aligned_cols=80 Identities=26% Similarity=0.487 Sum_probs=59.5
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHH-HHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChH
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALL-HANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPG 266 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~-~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~ 266 (279)
.+..||+||.|.++||+|..+ ..|.||..+. +..++..+ +. .....+++.|+.||.|..+||.+|++.
T Consensus 5 ~~~~Ci~Cg~C~~~CP~~~~~-~~~~g~~~~~~~~~~~~~~--~~--------~~~~~~~~~C~~C~~C~~~CP~~i~~~ 73 (396)
T PRK11168 5 SFDSCIKCTVCTTACPVARVN-PLYPGPKQAGPDGERLRLK--DG--------ALYDESLKYCSNCKRCEVACPSGVKIG 73 (396)
T ss_pred chhhcCCCCCCCccCCCcccC-CCCCChhhhccHHHHHhcc--ch--------hhcCCCCCcCcCcCccCcccCCCCCHH
Confidence 467899999999999999865 4477876542 22222111 10 111347899999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 023670 267 KQIINIKQLQLK 278 (279)
Q Consensus 267 ~~I~~lR~~~~~ 278 (279)
++|.++|..+.+
T Consensus 74 ~~i~~~r~~~~~ 85 (396)
T PRK11168 74 DIIQRARAKYVT 85 (396)
T ss_pred HHHHHHHHHHHH
Confidence 999999987654
No 35
>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional
Probab=99.12 E-value=1.9e-10 Score=96.49 Aligned_cols=85 Identities=16% Similarity=0.318 Sum_probs=68.5
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---Cc
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---MF 140 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~~ 140 (279)
+.+++++++ +++|||+||+.+ -...+.+|..|.||+|+|.|||+++.||.+++. +|.+..|||.|.. ..
T Consensus 16 ~~~~~~~~~-~~~Ll~~LR~~g-----ltgtK~GC~~G~CGACtVlvdg~~v~SCl~~a~~~~G~~V~TiEGl~~~~~l~ 89 (159)
T PRK09908 16 MPFQLHAAP-GTPLSELLREQG-----LLSVKQGCCVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLS 89 (159)
T ss_pred EEEEEecCC-CCcHHHHHHHcC-----CCCCCCCcCCCCCCCcEEEECCcEeehhHhhHHHhCCCEEEeecCCCCCCCCC
Confidence 567788888 899999999853 245788999999999999999999999999998 6788889999974 22
Q ss_pred chhhhhhccchhhhhh
Q 023670 141 VIKDLVVDMTNFYNQY 156 (279)
Q Consensus 141 vikDLvvD~~~~~~~~ 156 (279)
.|+.-.+|.+.+.+.|
T Consensus 90 pvQ~Af~~~~a~QCGy 105 (159)
T PRK09908 90 HVQQAYAKSGAVQCGF 105 (159)
T ss_pred HHHHHHHHcCCCcCCC
Confidence 3556666776666644
No 36
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=99.05 E-value=3.4e-10 Score=94.26 Aligned_cols=86 Identities=22% Similarity=0.412 Sum_probs=69.9
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCCC----
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM---- 139 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~~---- 139 (279)
+.+++++++ ++++||+||+... --..+.+|..|.||+|+|.|||+++.||.+++. +|.+..|||.|.+.
T Consensus 11 ~~~~~~~~p-~~~Ll~~LRd~l~----ltgtk~GC~~g~CGACtVlvDG~~v~SCl~~a~~~~G~~ItTiEGl~~~~~~l 85 (156)
T COG2080 11 EPVELDVDP-RTPLLDVLRDELG----LTGTKKGCGHGQCGACTVLVDGEAVNSCLTLAVQAEGAEITTIEGLAKKDGGL 85 (156)
T ss_pred eEEEEEeCC-CChHHHHHHHhcC----CCCcCCCCCCccCCceEEEECCeEehHHHHHHHHhCCCeEEEeecccCCCCCc
Confidence 678899998 8999999997542 234677899999999999999999999999998 78888899999842
Q ss_pred cchhhhhhccchhhhhh
Q 023670 140 FVIKDLVVDMTNFYNQY 156 (279)
Q Consensus 140 ~vikDLvvD~~~~~~~~ 156 (279)
..++.-.++.+.+.+.|
T Consensus 86 ~~vQ~Af~e~~~~QCGy 102 (156)
T COG2080 86 HPVQQAFLEHDAFQCGY 102 (156)
T ss_pred CHHHHHHHHcCCCcCCC
Confidence 33566667777777655
No 37
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=99.03 E-value=1.8e-10 Score=110.20 Aligned_cols=78 Identities=27% Similarity=0.480 Sum_probs=56.2
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhh---cccCccCchhhhhhhhhCCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAID---DEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~---~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
.+..||+||.|.++||+|..+ +.|.||.... .++ .++.... -...++.|+.|+.|..+||+||+
T Consensus 3 ~~~~Ci~Cg~C~~~Cp~~~~~-~~~~g~~~~~--------~~~----~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i~ 69 (397)
T TIGR03379 3 SFESCIKCTVCTVYCPVAKAN-PLYPGPKQAG--------PDG----ERLRLKSAELYDEALKYCTNCKRCEVACPSDVK 69 (397)
T ss_pred chhhCCCCCCCcccCcCcccc-CCccCcccCC--------cHH----HHHhcccchhcccccccCcCcCccchhcCCCCC
Confidence 357899999999999999865 3466654310 000 1111000 11368999999999999999999
Q ss_pred hHHHHHHHHHHHHh
Q 023670 265 PGKQIINIKQLQLK 278 (279)
Q Consensus 265 ~~~~I~~lR~~~~~ 278 (279)
+.++|.++|..+.+
T Consensus 70 ~~~~i~~~R~~~~~ 83 (397)
T TIGR03379 70 IGDIIARARNKYQK 83 (397)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988763
No 38
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.95 E-value=1e-09 Score=111.56 Aligned_cols=56 Identities=29% Similarity=0.453 Sum_probs=49.6
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECCee--eccccccccCC
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCN--GLACLTKISPS 127 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG~~--~lAC~t~v~~g 127 (279)
|++++ |.|||+||+.+| ..+|+||++.. +..|.|+.|.|+|||.+ ++||+|++.+|
T Consensus 13 ~~~~~-g~ti~~a~~~~g-~~ip~~c~~~~~~~~g~C~~C~V~v~g~~~~~~aC~t~~~~G 71 (652)
T PRK12814 13 VTAAP-GTSILEAAASAG-ITIPTLCFHQELEATGSCWMCIVEIKGKNRFVPACSTAVSEG 71 (652)
T ss_pred EEeCC-cCcHHHHHHHcC-CccccccCCCCCCCccccceeEEEECCCcceecCcCCCCCCC
Confidence 45567 999999999998 57999999876 78999999999999964 78999999987
No 39
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=98.93 E-value=7.8e-10 Score=104.85 Aligned_cols=84 Identities=27% Similarity=0.520 Sum_probs=65.1
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChH
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPG 266 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~ 266 (279)
....+|++||.|..+||++..+ +..+|+..+...+.....+.... +. +. ..+|.|+.|++|+..||.+|++.
T Consensus 6 ~~~~~Cv~Cg~C~~~CP~~~~~--~~~sPrgr~~~~r~~~~~~~~~~-~~---~~--~~~~~C~~C~~C~~~CP~~i~~~ 77 (388)
T COG0247 6 ESLDKCVHCGFCTNVCPSYRAT--EALSPRGRIVLVREVLRGKAPGD-EE---VY--EALDTCLACGACATACPSGIDIG 77 (388)
T ss_pred HHHHhcCCCCcccCcCCCcccc--CCCCCchHHHHHHHHHhCCCcch-hh---hH--HHHHhCcCccchHhhCCCCCcHH
Confidence 3567899999999999999865 67888887776666554433211 11 11 25799999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 023670 267 KQIINIKQLQLK 278 (279)
Q Consensus 267 ~~I~~lR~~~~~ 278 (279)
++|..+|+...+
T Consensus 78 ~~~~~~r~~~~~ 89 (388)
T COG0247 78 DLIREARRKLAK 89 (388)
T ss_pred HHHHHHHHHHHH
Confidence 999999988765
No 40
>TIGR03198 pucE xanthine dehydrogenase E subunit. This gene has been characterized in B. subtilis as the Iron-sulfur cluster binding-subunit of xanthine dehydrogenase (pucE), acting in conjunction with pucC, the FAD-binding subunit and pucD, the molybdopterin binding subunit. The more common XDH complex (GenProp0640) includes the xdhA gene as the Fe-S cluster binding component.
Probab=98.92 E-value=1.7e-09 Score=90.32 Aligned_cols=86 Identities=24% Similarity=0.335 Sum_probs=67.1
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC--Ccc
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH--MFV 141 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~--~~v 141 (279)
+.+++++++ +.++|++|++... -...+.+|..|.||+|.|.|||+++.||.+++. +|.+..|||.|.. +..
T Consensus 11 ~~~~~~~~~-~~~Ll~~LR~~~~----ltgtK~gC~~G~CGACtVlvdG~~v~SCl~~~~~~~G~~v~TiEgl~~~~l~p 85 (151)
T TIGR03198 11 QAWEVAAVP-TTRLSDLLRKELQ----LTGTKVSCGIGRCGACSVLIDGKLANACLTMAYQADGHEITTIEGIAENELDP 85 (151)
T ss_pred EEEEeecCC-CcHHHHHHHhccC----CCCCCCCCCCCcCCccEEEECCcEEechHHHHHHhcCCEEEecCCcCCCCCCH
Confidence 567788777 8999999998531 245677899999999999999999999999997 7888889999863 223
Q ss_pred hhhhhhccchhhhhh
Q 023670 142 IKDLVVDMTNFYNQY 156 (279)
Q Consensus 142 ikDLvvD~~~~~~~~ 156 (279)
++.-.++.+.+.+.|
T Consensus 86 vQ~af~~~~a~QCGf 100 (151)
T TIGR03198 86 CQTAFLEEGGFQCGY 100 (151)
T ss_pred HHHHHHHcCCCcCCC
Confidence 555556666655544
No 41
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=98.92 E-value=5.3e-10 Score=77.79 Aligned_cols=57 Identities=30% Similarity=0.805 Sum_probs=26.4
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
++++||.||.|+++||++... ..+....++... . .+.+ ..|.|++||+|+.+||+||
T Consensus 1 d~~~Ci~Cg~C~~~CP~~~~~-------------~~~~~~~~~~~~-~---~~~~--~~~~C~~C~~C~~~CP~~I 57 (57)
T PF13183_consen 1 DLSKCIRCGACTSVCPVYRNT-------------GRFSHPPRDRRS-A---VLRE--EAWSCTTCGACSEVCPVGI 57 (57)
T ss_dssp HHHC--S-SHHHHCSHHHHHH-------------HHHHTSTTS--H-H---HHHH--HHGG-----HHHHH-TT--
T ss_pred CHHHccCccChHHHChhhhcc-------------cccccCcchhHH-H---hhcc--cccCCcCcCCccCcCcccc
Confidence 367899999999999966421 122222333211 1 1111 2399999999999999997
No 42
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=98.87 E-value=5.2e-10 Score=79.02 Aligned_cols=61 Identities=31% Similarity=0.653 Sum_probs=31.9
Q ss_pred cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
+|+.||.|+.+||++..++. -|..++..+.+ ...+. +.+...++.|+.||.|..+||.|||
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~---~~~~~~~~~~~--~~~~~--------~~~~~~~~~C~~Cg~C~~~CP~~l~ 61 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPD---EPRSPMRAIYL--GKIDE--------ISESHAASLCIGCGLCESVCPQGLD 61 (61)
T ss_dssp T----STTGGGSHHHHHCTT---THHHHHHHHHH--CHCHT--------THHHTTTTT--S--HHHHH-TT---
T ss_pred CCCCCCcCcccCCCccccCc---cHHHHHHHHHH--hcchh--------hhhCcccccCcCcCcCcccccCCCc
Confidence 59999999999999876532 26665554443 11111 1112478999999999999999986
No 43
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=98.72 E-value=6.4e-09 Score=97.69 Aligned_cols=36 Identities=17% Similarity=0.301 Sum_probs=32.4
Q ss_pred ccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670 243 EFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 243 ~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~ 278 (279)
..+.+.|+.||+|..+||++|++.++|..+|+.+.+
T Consensus 303 ~~g~~~CvgCGrC~~~CP~~I~i~~~i~~lr~~~~~ 338 (344)
T PRK15055 303 RFGYHMCVGCGRCDDRCPEYISFSNCINKLTDAVEE 338 (344)
T ss_pred ccchhhCcCcCccccccCCCCCHHHHHHHHHHHHHH
Confidence 347789999999999999999999999999987754
No 44
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=98.59 E-value=1.1e-08 Score=98.53 Aligned_cols=58 Identities=19% Similarity=0.333 Sum_probs=51.0
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECC--eeeccccccccCC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDG--CNGLACLTKISPS 127 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG--~~~lAC~t~v~~g 127 (279)
|.|-+++ |+|||+|...+| -.+|.||||..- -.|.|++|.|+|+. +++.||..++-.|
T Consensus 40 ~~v~v~p-g~tvlqac~~~g-v~iprfcyh~rlsvagncrmclvevekspkpva~campvm~g 100 (708)
T KOG2282|consen 40 QSVMVEP-GTTVLQACAKVG-VDIPRFCYHERLSVAGNCRMCLVEVEKSPKPVAACAMPVMKG 100 (708)
T ss_pred eeEeeCC-CcHHHHHHHHhC-CCcchhhhhhhhhhccceeEEEEEeccCCCcchhhcccccCC
Confidence 4577778 999999999999 579999999975 45999999999998 6789999999877
No 45
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=98.57 E-value=5.7e-08 Score=94.39 Aligned_cols=75 Identities=21% Similarity=0.355 Sum_probs=53.9
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChH
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPG 266 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~ 266 (279)
.....||.||.|+.+||... .|..+.++.. ..+. +. . ...+.+.|+.||.|..+||.++++.
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l-------~p~~l~~~~~---~~~~----~~---~-~~~~~~~C~~Cg~C~~vCP~~i~l~ 421 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNL-------LPQQLNWLAL---ADEF----DE---A-EEHNLMDCIECGCCSYVCPSNIPLV 421 (435)
T ss_pred ccCCcCcCccchhhhCccch-------hhHHHHHHhh---hccc----ch---h-hcCCCCcCCcCCCcccccCCCCCHH
Confidence 34579999999999999753 2333333211 1110 11 1 1246799999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 023670 267 KQIINIKQLQLKR 279 (279)
Q Consensus 267 ~~I~~lR~~~~~~ 279 (279)
+.|...|+++.++
T Consensus 422 ~~ir~~k~~l~~~ 434 (435)
T TIGR01945 422 QYIRQAKAKLRAK 434 (435)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988653
No 46
>PRK09800 putative hypoxanthine oxidase; Provisional
Probab=98.52 E-value=1e-07 Score=100.39 Aligned_cols=85 Identities=21% Similarity=0.229 Sum_probs=69.1
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---C
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---M 139 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~ 139 (279)
+.+++++++ +++|||+||+.+ -.+.+.+ |..|.||+|+|.|||+++.||.+++. +|.+..|||.|.. +
T Consensus 10 ~~~~~~~~~-~~~l~~~LR~~~-----~~~~k~g~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~ 83 (956)
T PRK09800 10 APQELTVNP-GENVQKLLFNMG-----MHSVRNSDDGFGFAGSDAIIFNGNIVNASLLIAAQLEKADIRTAESLGKWNEL 83 (956)
T ss_pred EEEEEecCC-CCCHHHHHHHCC-----CCccccCCCCcccCCCCEEEECCeEEeHHHHHHHHcCCCEEEecCCcCCCCCC
Confidence 566788888 899999999954 2456776 89999999999999999999999998 6788889999974 2
Q ss_pred cchhhhhhccchhhhhh
Q 023670 140 FVIKDLVVDMTNFYNQY 156 (279)
Q Consensus 140 ~vikDLvvD~~~~~~~~ 156 (279)
..++.-.+|.+.+.+.|
T Consensus 84 ~~~q~af~~~~~~QCG~ 100 (956)
T PRK09800 84 SLVQQAMVDVGVVQSGY 100 (956)
T ss_pred CHHHHHHHHcCCCcCCC
Confidence 34666677777776654
No 47
>TIGR03313 Se_sel_red_Mo probable selenate reductase, molybdenum-binding subunit. Our comparative genomics suggests this protein family to be a subunit of a selenium-dependent molybdenum hydroxylase, although the substrate is not specified. This protein is suggested by Bebien, et al., to be the molybdenum-binding subunit of a molydbopterin-containing selenate reductase. Xi, et al, however, show that mutation of this gene in E. coli conferred sensitivity to adenine, suggesting a defect in purine interconversion. This finding, plus homology of nearby genes in a 23-gene purine catabolism region in E. coli to xanthine dehydrogase subunits suggests xanthine dehydrogenase activity.
Probab=98.50 E-value=1.3e-07 Score=99.79 Aligned_cols=85 Identities=20% Similarity=0.215 Sum_probs=68.8
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccC-CCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---C
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRR-SCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---M 139 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~-~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~ 139 (279)
+.+++++++ +++|||+||+.+ -.+.+. +|..|.||+|+|.|||+++.||.+++. +|.+..|||.|.. +
T Consensus 6 ~~~~~~~~~-~~~l~~~LR~~~-----l~~~k~~~c~~g~CGaCtv~~dg~~v~sC~~~~~~~~g~~i~Tiegl~~~~~~ 79 (951)
T TIGR03313 6 APQTLECKL-GENVQTLLFNMG-----MHSVRNSDDGFGFAGSDAILFNGVLKNASLLIAAQLEGAEVRTAESLGQWNQL 79 (951)
T ss_pred EEEEEecCC-CCCHHHHHHHCC-----CCCCcCCCCCcccCCCCEEEECCeEeeHHHHHHHHcCCCEEEecCcCCCCCCC
Confidence 456788888 899999999953 234666 699999999999999999999999998 7888889999974 3
Q ss_pred cchhhhhhccchhhhhh
Q 023670 140 FVIKDLVVDMTNFYNQY 156 (279)
Q Consensus 140 ~vikDLvvD~~~~~~~~ 156 (279)
..++.-.+|.+.+.+.|
T Consensus 80 ~~~q~af~~~~a~QCG~ 96 (951)
T TIGR03313 80 SLVQQAMVDVGVVQSGY 96 (951)
T ss_pred CHHHHHHHHcCCCcCCC
Confidence 34666677777777654
No 48
>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain. Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.
Probab=98.48 E-value=2.2e-07 Score=69.18 Aligned_cols=53 Identities=34% Similarity=0.662 Sum_probs=42.5
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC------------------CeeeccccccccC
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID------------------GCNGLACLTKISP 126 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in------------------G~~~lAC~t~v~~ 126 (279)
..+|++++ |.|||++|+..+. ....+|+.|.||+|.|+|. +..+|||.+.+.+
T Consensus 9 ~~~~~~~~-g~~ll~al~~~g~------~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~ 79 (84)
T cd00207 9 GVEVEVPE-GETLLDAAREAGI------DIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTD 79 (84)
T ss_pred CEEEEECC-CCcHHHHHHHcCC------CcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCC
Confidence 44566777 8999999999763 2557899999999999996 4467899998863
No 49
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=98.47 E-value=1.7e-07 Score=95.59 Aligned_cols=76 Identities=18% Similarity=0.303 Sum_probs=52.7
Q ss_pred hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+..+...+|+.||.|+.+||..... ..+.+...++.. .. +. ...+.|+.||+|.++||+++
T Consensus 398 El~~eadrCI~CG~Cv~aCP~~l~i----------~~~I~~a~~G~~----~~---l~--~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 398 ELKELAKKCTECGWCVRVCPNELPI----------PEAMEAAAKGDL----SK---LE--DLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HHHHhhhhCcCCCCccccCCCCcch----------hHHHHHHhcCCh----hh---hh--hhhhhccchhHHhhhCCCCC
Confidence 4455678999999999999964210 111122122111 11 11 13578999999999999999
Q ss_pred ChHHHHHHHHHHHHh
Q 023670 264 NPGKQIINIKQLQLK 278 (279)
Q Consensus 264 ~~~~~I~~lR~~~~~ 278 (279)
++.++|..+|+.+++
T Consensus 459 pi~emi~~Ar~~~Vk 473 (781)
T PRK00941 459 PIVSMIEKAAQHRIK 473 (781)
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999999988774
No 50
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=98.44 E-value=1.7e-07 Score=87.74 Aligned_cols=89 Identities=17% Similarity=0.328 Sum_probs=57.0
Q ss_pred ccccCcccCcccCCCCCcccC--CCcc---cCHHH---------HHHHHHHhh---cCcchhHHHHHH-Hh-------hc
Q 023670 188 GMYECILCACCSTSCPSYWWT--SEAY---LGPAA---------LLHANRWIS---DSRDEYTKERLE-AI-------DD 242 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~--~~~~---~gP~~---------l~~a~r~~~---d~r~~~~~erl~-~l-------~~ 242 (279)
...+||.||.|..+||+.... .+++ .|..+ +...+..+. ..|... .+|+. .+ .+
T Consensus 218 ~~~rCi~C~~C~~~CPtC~Cf~i~D~~~~~~g~~geR~R~WDSC~~~~Ft~~agGhn~R~~~-~~R~R~r~~HKl~~~~~ 296 (334)
T TIGR02910 218 YDSRCIACGRCNTVCPTCTCFSMQDVFYKDNPKAGERRRVWASCMVDGFTNMAGGHGFREKK-GQRMRFKVMHKVNDYKK 296 (334)
T ss_pred HHhhCCcCccccccCCceEeeEEEEecccCCCCceEEEEEecccCCcchhhhcCCCCCCCCH-HHHHHHHHhhhcccccc
Confidence 357999999999999997541 1111 12111 000011112 234332 24443 11 23
Q ss_pred ccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHH
Q 023670 243 EFKLYRCHTILNCARACPKGLNPGKQIINIKQLQL 277 (279)
Q Consensus 243 ~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~ 277 (279)
..+...|+.||+|.++||++||+.++|..||+++-
T Consensus 297 ~fG~~~CvgCGrC~~~CP~~idi~~~i~~i~~~~~ 331 (334)
T TIGR02910 297 RNGYHMCVGCGRCDDICPEYISFSNCINKLTAAVR 331 (334)
T ss_pred ccCccccCCcCchhhhCCCCCCHHHHHHHHHHHHh
Confidence 56788999999999999999999999999998764
No 51
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=98.41 E-value=1.7e-07 Score=95.65 Aligned_cols=72 Identities=22% Similarity=0.534 Sum_probs=50.7
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHH
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGK 267 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~ 267 (279)
....||.||.|+.+||... .|..+.. + ....+. +. + ..++++.|+.||.|..+||.+|++..
T Consensus 368 ~e~~CI~CG~Cv~aCP~~l-------lP~~l~~---~-~~~~d~---~~---~-~~~~~~~CieCG~C~~vCPs~Iplv~ 429 (695)
T PRK05035 368 PEQPCIRCGACADACPASL-------LPQQLYW---F-AKAEEH---DK---A-QEYNLFDCIECGACAYVCPSNIPLVQ 429 (695)
T ss_pred chhhcCCcccHHHHCCccc-------hhhhHHH---h-hhcccc---ch---h-hhcChhhccccCcccccCCCCCcHHH
Confidence 4578999999999999763 2322222 1 111111 11 1 12467899999999999999999999
Q ss_pred HHHHHHHHHH
Q 023670 268 QIINIKQLQL 277 (279)
Q Consensus 268 ~I~~lR~~~~ 277 (279)
+|...|..+.
T Consensus 430 ~~r~aK~~i~ 439 (695)
T PRK05035 430 YYRQAKAEIR 439 (695)
T ss_pred HHHHHHHHHH
Confidence 9999887654
No 52
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=98.41 E-value=3.3e-07 Score=93.35 Aligned_cols=76 Identities=17% Similarity=0.295 Sum_probs=51.9
Q ss_pred hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+..+...+|+.||.|+.+||..... ..+.....++.. +. +. ...+.|+.||+|+++||+++
T Consensus 359 el~~~~~kCI~CG~Cv~aCP~~l~i----------~e~i~~~~~G~~----~~---l~--~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 359 EFQELAAKCTDCGWCTRACPNSLRI----------KEAMEAAKEGDF----SG---LA--DLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HHHHhhhcCCCCCcccccCCCCCcH----------HHHHHHHhcCCh----hh---hh--hhHhhhhhhhHHhhhCCCCC
Confidence 3455678999999999999965210 111122222211 11 11 12578999999999999999
Q ss_pred ChHHHHHHHHHHHHh
Q 023670 264 NPGKQIINIKQLQLK 278 (279)
Q Consensus 264 ~~~~~I~~lR~~~~~ 278 (279)
++.++|..+++..++
T Consensus 420 pi~~mi~~a~~~~vk 434 (731)
T cd01916 420 PIINMIEKAARERIK 434 (731)
T ss_pred ChHHHHHHHHHHHHh
Confidence 999999999987653
No 53
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=98.38 E-value=4.5e-07 Score=88.85 Aligned_cols=86 Identities=19% Similarity=0.383 Sum_probs=68.4
Q ss_pred EEEEE-eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE----CC-----eeecccccccc--CCCCceEE
Q 023670 66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI----DG-----CNGLACLTKIS--PSGSASTI 133 (279)
Q Consensus 66 ~~~~v-~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i----nG-----~~~lAC~t~v~--~g~~~~~i 133 (279)
+.+++ ++++ ++|+||.||+... -...+.+|.+|.||+|+|.| || +++.||.+++. +|.+..||
T Consensus 8 ~~~~~~~~~~-~~~ll~~lR~~~~----l~g~k~gC~~G~CGaCtv~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~Tv 82 (467)
T TIGR02963 8 ETVTLSDVDP-TRTLLDYLREDAG----LTGTKEGCAEGDCGACTVVVGELVDGGKLRYRSVNACIQFLPSLDGKAVVTV 82 (467)
T ss_pred EEEEeecCCC-CCCHHHHHHHhcC----CCCCCcccCCCCCCceEEEEEecCCCCcccceEEehhhhhHHhcCCCEEEec
Confidence 56678 6777 8999999998431 24578899999999999999 99 99999999998 78888999
Q ss_pred eeCCC----Ccchhhhhhccchhhhhh
Q 023670 134 TPLPH----MFVIKDLVVDMTNFYNQY 156 (279)
Q Consensus 134 epl~~----~~vikDLvvD~~~~~~~~ 156 (279)
|.|.. +..++.-.++.+.+.+.|
T Consensus 83 Egl~~~~~~l~~~q~a~~~~~~~QCG~ 109 (467)
T TIGR02963 83 EDLRQPDGRLHPVQQAMVECHGSQCGF 109 (467)
T ss_pred CCCCCCCCCCCHHHHHHHHcCCCcCCC
Confidence 99973 233566667777766644
No 54
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=98.38 E-value=3.8e-07 Score=93.02 Aligned_cols=75 Identities=19% Similarity=0.349 Sum_probs=51.0
Q ss_pred hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
...+...+|+.||.|..+||..... .........+.. .. +. ...+.|+.||.|..+||++|
T Consensus 393 eLl~~~~kCI~CG~Cv~aCP~~l~i----------~e~i~~a~~G~l----~~---l~--~~~d~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 393 ELMELANKCTQCGNCVRTCPNSLRV----------DEAMAHAQKGDL----SK---LE--QLEEQCYACGRCEQACPKNI 453 (784)
T ss_pred HHhhhcccCCCcccchhhCCCCcch----------HHHHHHHhcCCc----cc---cc--cCHhhhhhhhHHhccCCCCC
Confidence 4455678999999999999975211 111111111111 01 11 12468999999999999999
Q ss_pred ChHHHHHHHHHHHH
Q 023670 264 NPGKQIINIKQLQL 277 (279)
Q Consensus 264 ~~~~~I~~lR~~~~ 277 (279)
++.++|..+|+..+
T Consensus 454 pIvemI~~Ar~~~v 467 (784)
T TIGR00314 454 PIISMITKAGEDRL 467 (784)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999997654
No 55
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=98.34 E-value=4e-07 Score=88.65 Aligned_cols=72 Identities=15% Similarity=0.133 Sum_probs=55.0
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchh--hhhhhhhCCCCCChH
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT--ILNCARACPKGLNPG 266 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~--Cg~C~~vCP~gi~~~ 266 (279)
...||+||.|+.+||.. +-|..+++++.. .+. +.. +..+++.|.. ||.|+.+||..|++.
T Consensus 373 ~~~CI~Cg~C~~vCP~~-------L~P~~l~ra~~~----~d~---~~~----e~~~~~~C~EedCG~CsyVCPskipL~ 434 (448)
T PRK05352 373 ERAMVPIGNYERVMPLD-------ILPTQLLRALIV----GDT---DEA----QALGALELDEEDLALCTFVCPGKYEYG 434 (448)
T ss_pred CcceeecCcHhhcCCCC-------CCHHHHHHHHHc----CCH---HHH----HHcCchhcCccccCCCccCCCCCchHH
Confidence 45899999999999974 457666665432 221 111 1257999999 999999999999999
Q ss_pred HHHHHHHHHHHh
Q 023670 267 KQIINIKQLQLK 278 (279)
Q Consensus 267 ~~I~~lR~~~~~ 278 (279)
+.|...+..+.+
T Consensus 435 q~iR~~k~~~~~ 446 (448)
T PRK05352 435 PILRDGLDRIEK 446 (448)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 56
>TIGR03311 Se_dep_Molyb_1 selenium-dependent molybdenum hydroxylase 1. Members of this protein family show full length homology to the molybdenum-containing aldehyde oxido-reductase of Desulfovibrio gigas. Members, however, are found only within species that have, and near those genes that encode, a set of predicted accessory proteins for selenium-dependent molybdenum hydroxylases. The best known examples of such enzymes are forms of xanthine dehydrogenase and purine hydroxylase; this family appears to be another such enzyme.
Probab=98.33 E-value=6.1e-07 Score=93.76 Aligned_cols=83 Identities=19% Similarity=0.305 Sum_probs=65.8
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCCC--cchhh
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHM--FVIKD 144 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~~--~vikD 144 (279)
++++++ +++|||+||+-.. -...+.+|..|.||+|+|.|||+++.||.+++. +|.+..|||.|... ..|+.
T Consensus 9 ~~~~~~-~~~l~~~lr~~~~----~~~~k~gc~~g~cgactv~~dg~~~~sc~~~~~~~~g~~i~T~egl~~~~~~~~q~ 83 (848)
T TIGR03311 9 EVDVNE-EKKLLEFLREDLR----LTGVKNGCGEGACGACTVIVNGKAVRACRFTTAKLAGKEITTVEGLTEREKDVYAW 83 (848)
T ss_pred EeeCCC-CCcHHHHHHHhcC----CCcCCCCCCCCCCCCcEEEECCeEEehhhhhHHhcCCCEEEecCCCCCCCCCHHHH
Confidence 456667 8999999997421 235788999999999999999999999999998 67888899999742 23666
Q ss_pred hhhccchhhhhh
Q 023670 145 LVVDMTNFYNQY 156 (279)
Q Consensus 145 LvvD~~~~~~~~ 156 (279)
-.+|.+.+.+.|
T Consensus 84 a~~~~~~~qcG~ 95 (848)
T TIGR03311 84 AFAKAGAVQCGF 95 (848)
T ss_pred HHHHcCCCcCCC
Confidence 667777766644
No 57
>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions. Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....
Probab=98.29 E-value=1.4e-06 Score=64.28 Aligned_cols=42 Identities=29% Similarity=0.584 Sum_probs=33.5
Q ss_pred EEEEEeccCCCch-HHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC
Q 023670 66 KEFEINLKECGPM-VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID 113 (279)
Q Consensus 66 ~~~~v~~~~~g~t-vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in 113 (279)
+.++|++.+ |.+ |||||++.+. +....+|+.|.||+|.|+|.
T Consensus 6 ~~~~~~~~~-~~~~ll~~~~~~~g-----i~i~~~C~~g~Cg~C~v~v~ 48 (78)
T PF00111_consen 6 KGVTVEVPP-GETLLLDALERAGG-----IGIPYSCGGGGCGTCRVRVL 48 (78)
T ss_dssp EEEEEEEET-TSBBHHHHHHHTTT-----TTSTTSSSSSSSSTTEEEEE
T ss_pred eEEEEEeCC-CccHHHHHHHHcCC-----CCcccCCCCCccCCcEEEEe
Confidence 567777777 778 9999999731 33558899999999999975
No 58
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=98.26 E-value=8e-08 Score=82.00 Aligned_cols=59 Identities=25% Similarity=0.494 Sum_probs=37.0
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcc-hhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRD-EYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~-~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+.+.||.|+.|..+||+.... +..+.+. ++. .+.. . -+....+|++||.|+++||+++
T Consensus 52 l~~~~CIgC~lCa~iCP~~aI~---------------m~~~~~~~~g~-~~~~-~-~~In~grCIfCg~C~e~CPt~A 111 (172)
T COG1143 52 LDRDKCIGCGLCANICPANAIT---------------METAERKVDGR-KKPK-R-PDINLGRCIFCGLCVEVCPTGA 111 (172)
T ss_pred ccccCCcchhHHHhhCCcCceE---------------EEEcccCCCCc-cccc-c-ceeccccccccCchhhhCchhh
Confidence 3455699999999999975321 1111111 110 1111 1 1246789999999999999986
No 59
>CHL00134 petF ferredoxin; Validated
Probab=98.23 E-value=4.7e-06 Score=64.91 Aligned_cols=39 Identities=28% Similarity=0.560 Sum_probs=32.3
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI 112 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i 112 (279)
.+.+++++ |.||||||.+.|. ....+|+.|.||+|.|.|
T Consensus 16 ~~~~~~~~-~~tLL~a~~~~Gi------~i~~~C~~G~Cg~C~v~v 54 (99)
T CHL00134 16 DVTIDCPD-DVYILDAAEEQGI------DLPYSCRAGACSTCAGKV 54 (99)
T ss_pred eEEEEECC-CCcHHHHHHHcCC------CCCcCCCCccCCCCEEEE
Confidence 45566667 8999999999983 255789999999999997
No 60
>TIGR02008 fdx_plant ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.
Probab=98.20 E-value=6.1e-06 Score=63.96 Aligned_cols=38 Identities=29% Similarity=0.529 Sum_probs=31.0
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI 112 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i 112 (279)
..+++++ |.||||||.+.|. ....+|+.|.||+|.|.|
T Consensus 15 ~~~~~~~-g~tLLda~~~~Gi------~i~~~C~~G~Cg~C~v~v 52 (97)
T TIGR02008 15 ETIECPD-DQYILDAAEEAGI------DLPYSCRAGACSTCAGKV 52 (97)
T ss_pred EEEEECC-CCcHHHHHHHcCC------CCCcCCCCccCCCCceEE
Confidence 3455567 8999999999983 245789999999999997
No 61
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.19 E-value=1.4e-06 Score=84.73 Aligned_cols=69 Identities=26% Similarity=0.535 Sum_probs=49.3
Q ss_pred cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHH
Q 023670 191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQII 270 (279)
Q Consensus 191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~ 270 (279)
.||+||.|+.+||++.. |..+ +++ .... +.++++ .+.+..|+.||.|..+||.+|++..++.
T Consensus 366 sCi~C~~C~d~CP~~Ll-------p~ql---~~~-a~~~-~~~e~~------~~~l~dCIECg~Ca~vCPs~iplvq~~r 427 (529)
T COG4656 366 SCIRCSLCADACPVNLL-------PQQL---YWF-AKGE-QHDEEE------EHNLLDCIECGACAYVCPSNIPLVQYFR 427 (529)
T ss_pred ccccHHHHHHhCccccC-------HHHh---hHH-hhhh-hhhHHH------HHHhhhhhhhCcchhcCCCCCCHHHHHH
Confidence 79999999999998742 3222 222 2111 111111 2367889999999999999999999998
Q ss_pred HHHHHHH
Q 023670 271 NIKQLQL 277 (279)
Q Consensus 271 ~lR~~~~ 277 (279)
..+.++.
T Consensus 428 ~~Ka~i~ 434 (529)
T COG4656 428 QEKAEIL 434 (529)
T ss_pred HHHHHHH
Confidence 8887654
No 62
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=98.17 E-value=1.8e-06 Score=81.50 Aligned_cols=71 Identities=18% Similarity=0.413 Sum_probs=50.6
Q ss_pred hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC---
Q 023670 185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK--- 261 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~--- 261 (279)
....+..|..|+.|...||++.... . +.+.++..+.. -.+.|++||.|...||.
T Consensus 9 ~~R~l~iC~~C~~C~~~CpvfPa~~----~--------------~~~~~~~d~~~-----la~lChnC~~C~~~CPy~pP 65 (372)
T TIGR02484 9 AKRVLNLCNSCGYCTGLCAVFPAAQ----G--------------RPDLTRGDLRH-----LAHLCHDCQSCWHDCQYAPP 65 (372)
T ss_pred HHHHhHhCcCcCCccccCCCccccc----c--------------ccccCHHHHHH-----HHHHCcCcccccccCcCCCC
Confidence 3345688999999999999884321 0 11001111211 36889999999999999
Q ss_pred ---CCChHHHHHHHHHHHHh
Q 023670 262 ---GLNPGKQIINIKQLQLK 278 (279)
Q Consensus 262 ---gi~~~~~I~~lR~~~~~ 278 (279)
++|+.+++.++|....+
T Consensus 66 Hef~v~~p~lma~~R~~~~~ 85 (372)
T TIGR02484 66 HAFAINLPATLADVRRASYA 85 (372)
T ss_pred ccccCCHHHHHHHHHHHHHH
Confidence 77999999999987643
No 63
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=98.15 E-value=2.4e-06 Score=83.17 Aligned_cols=71 Identities=14% Similarity=0.095 Sum_probs=52.0
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchh--hhhhhhhCCCCCChH
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT--ILNCARACPKGLNPG 266 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~--Cg~C~~vCP~gi~~~ 266 (279)
...||+||.|+.+||+. +-|..+.++.+ .++. +.. +..+++.|.. ||.|+.|||.++++.
T Consensus 372 ~~aCI~CG~C~~vCPm~-------L~P~~L~~a~~----~~d~---d~a----~~lg~~ecieedCG~CsyVCPSki~l~ 433 (447)
T TIGR01936 372 ERAMIPIGIYERVMPLD-------IPPTLLLKALI----AGDF---DKA----QRLGALEVDEEDFALCTFVDPSKYEYG 433 (447)
T ss_pred ccceeECChHhhcCCCC-------CCHHHHHHHHH----cCCH---HHH----HHCCCcccCccccccCceECCCCchHH
Confidence 34699999999999975 34656555433 2221 122 2358999998 999999999999999
Q ss_pred HHHHHHHHHHH
Q 023670 267 KQIINIKQLQL 277 (279)
Q Consensus 267 ~~I~~lR~~~~ 277 (279)
..|...-..+.
T Consensus 434 q~iR~~l~~~~ 444 (447)
T TIGR01936 434 SIVRESLDRIE 444 (447)
T ss_pred HHHHHHHHHHH
Confidence 99987665543
No 64
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=98.14 E-value=1.8e-07 Score=63.95 Aligned_cols=52 Identities=23% Similarity=0.584 Sum_probs=24.7
Q ss_pred cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+||.||.|+.+||...+. +........ + ..+ ......|++||+|+.+||+|+
T Consensus 1 ~C~~C~~C~~~CP~~~i~---------------~~~~~~~~~---~-~~~--~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIR---------------LDEEENEEG---K-PKM--VIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCE---------------EEETTT-SS---S-TTS--EETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccC---------------cccccccCC---c-eEE--EEechhCcCcChhhhhCcCcC
Confidence 599999999999965321 000000000 0 011 234688999999999999985
No 65
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=98.14 E-value=2.7e-07 Score=67.23 Aligned_cols=27 Identities=26% Similarity=0.635 Sum_probs=23.0
Q ss_pred HhhcccCccCchhhhhhhhhCCCCCCh
Q 023670 239 AIDDEFKLYRCHTILNCARACPKGLNP 265 (279)
Q Consensus 239 ~l~~~~~~~~C~~Cg~C~~vCP~gi~~ 265 (279)
.+.+..+...|+.||+|+.+||+|||+
T Consensus 42 k~~~~~~~~~CVgCgrCv~~CP~~Idi 68 (69)
T PF13746_consen 42 KLRDRYGEGDCVGCGRCVRVCPAGIDI 68 (69)
T ss_pred hhhhhcCCccCCCcChHhhhcCCCCCc
Confidence 334456889999999999999999996
No 66
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=98.12 E-value=2.6e-07 Score=63.64 Aligned_cols=54 Identities=24% Similarity=0.565 Sum_probs=28.1
Q ss_pred cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+||.||.|+.+||......... + ..... .........+.|+.||.|+.+||+++
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~-~-------------~~~~~-----~~~~~~~~~~~C~~Cg~C~~~CP~~A 54 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDED-G-------------GKKVV-----DKDNERRNAEKCIGCGACVKACPTGA 54 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETT-T-------------TCEEC-----SECCESTTGGG--TTCHHHHHSTTT-
T ss_pred CCCCcchHHHHCCccCeEccCc-c-------------ccccc-----cccccCCCCCccccHhHHHHHcchhh
Confidence 6999999999999754321100 0 00000 00001114568999999999999984
No 67
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=98.11 E-value=6.6e-07 Score=61.05 Aligned_cols=50 Identities=28% Similarity=0.512 Sum_probs=20.7
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP 260 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP 260 (279)
+.+.++|+.||.|+.+||..... .+ ..... ......+.|+.||.|+.+||
T Consensus 3 ~id~~~C~~C~~C~~~CP~~~~~------------~~---~~~~~----------~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 3 VIDEDKCIGCGRCVKVCPADNAI------------AI---DDGEK----------KVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ---TT------TTGGG-TT-----------------E---EE-SS----------SEEE-TTT--TTSHHHHH-T
T ss_pred ccCcccCcCCcChHHHccchhHH------------Hh---hccCC----------CeEeCcccccccChhhhhCc
Confidence 35678999999999999972100 00 00000 01225789999999999999
No 68
>PRK10713 2Fe-2S ferredoxin YfaE; Provisional
Probab=98.03 E-value=9.9e-06 Score=61.13 Aligned_cols=39 Identities=33% Similarity=0.677 Sum_probs=30.4
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG 114 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG 114 (279)
+++.+.+.||||||.+.| +...++|+.|.||+|.+.+ .|
T Consensus 13 ~~~~~~~~tlL~a~~~~g------i~~p~~Cr~G~Cg~C~~~~~sG 52 (84)
T PRK10713 13 LLCQDEHPSLLAALESHN------VAVEYQCREGYCGSCRTRLVAG 52 (84)
T ss_pred EEecCCCCcHHHHHHHcC------CCCCCCCCCeECCCCEeEEEeC
Confidence 344432589999999988 3366899999999999985 55
No 69
>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system. This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.
Probab=98.01 E-value=1.9e-05 Score=62.56 Aligned_cols=51 Identities=16% Similarity=0.315 Sum_probs=36.6
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEE
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNI 112 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~i 112 (279)
.+.+..-++.|.. + .|++.+ |.||||||++.|. . ...+|+ .|.||+|.|.|
T Consensus 3 ~~~~~~~~~~p~~------~--~~~~~~-g~tLL~a~~~~gi-~-----i~~~CgG~G~CgtC~v~V 54 (110)
T TIGR02007 3 IVFLPHEDLCPEG------A--VVEAKP-GETILDVALDNGI-E-----IEHACEKSCACTTCHCIV 54 (110)
T ss_pred EEEEeCcccCCCC------e--EEEECC-CChHHHHHHHcCC-C-----ccccCCCCceeCCCEEEE
Confidence 3445555566533 3 455567 8999999999883 2 446798 59999999988
No 70
>PLN00192 aldehyde oxidase
Probab=97.98 E-value=8.3e-06 Score=89.00 Aligned_cols=86 Identities=20% Similarity=0.357 Sum_probs=69.0
Q ss_pred EEEEE-eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE----------CCeeecccccccc--CCCCceE
Q 023670 66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI----------DGCNGLACLTKIS--PSGSAST 132 (279)
Q Consensus 66 ~~~~v-~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i----------nG~~~lAC~t~v~--~g~~~~~ 132 (279)
+.|++ ++++ ++||||.||+... -...+.+|.+|.||+|+|.| +|+++.||.+++. +|.+.+|
T Consensus 13 ~~~~~~~~~p-~~~Ll~~LR~~~~----ltgtK~gC~~G~CGaCtV~v~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 87 (1344)
T PLN00192 13 ERFELSSVDP-STTLLEFLRTQTP----FKSVKLGCGEGGCGACVVLLSKYDPVLDQVEDFTVSSCLTLLCSVNGCSITT 87 (1344)
T ss_pred EEEEeccCCC-CCcHHHHHHHhhC----CCCcCCCCCCCcCCCcEEEEeeccccccCcCCcEEehHHHHHHHhCCCEEEe
Confidence 56777 5777 8999999998531 24477899999999999999 6899999999998 7888999
Q ss_pred EeeCCC----Ccchhhhhhccchhhhhh
Q 023670 133 ITPLPH----MFVIKDLVVDMTNFYNQY 156 (279)
Q Consensus 133 iepl~~----~~vikDLvvD~~~~~~~~ 156 (279)
||.|.+ +..|+.-+++.+.+.+.|
T Consensus 88 vEgl~~~~~~lhpvq~a~~~~~~~QCGf 115 (1344)
T PLN00192 88 SEGLGNSKDGFHPIHKRFAGFHASQCGF 115 (1344)
T ss_pred ecCcCCCCCCCCHHHHHHHHcCCCccCC
Confidence 999974 334677788888776644
No 71
>PLN02593 adrenodoxin-like ferredoxin protein
Probab=97.98 E-value=2.6e-05 Score=62.56 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=32.2
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEE
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNI 112 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~i 112 (279)
++.+|++.. |.|||+|++++|.. +..+|+. |.||.|.|.|
T Consensus 11 ~~~~v~~~~-G~tLl~a~~~~gi~------i~~~CgG~g~C~tC~V~V 51 (117)
T PLN02593 11 EERTVKAPV-GMSLLEAAHENDIE------LEGACEGSLACSTCHVIV 51 (117)
T ss_pred CEEEEEECC-CCcHHHHHHHcCCC------CCccCCCcceeCCCEEEE
Confidence 456677777 99999999999842 3357985 9999999999
No 72
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=97.96 E-value=9.9e-07 Score=73.90 Aligned_cols=100 Identities=20% Similarity=0.418 Sum_probs=54.5
Q ss_pred chhhhhhccchhhhhhhccc-cccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHH
Q 023670 141 VIKDLVVDMTNFYNQYKSIE-PWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALL 219 (279)
Q Consensus 141 vikDLvvD~~~~~~~~~~~~-p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~ 219 (279)
.++.+.+.+++++..-..++ ||-... . ...++-.+..+..-.+..+||.|..|.++||.-...
T Consensus 66 ~~rGf~itLsh~f~~p~TInYPfEKgp--l---S~RFRGehalrRyp~geerCIACklCeavCPaqait----------- 129 (212)
T KOG3256|consen 66 LIRGFMITLSHTFREPVTINYPFEKGP--L---SPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAIT----------- 129 (212)
T ss_pred HHHHHHhhHHhhcCCCeeecCccccCC--C---CcccccchhhhcCCCcchhhhhHHHHHHhCCcccce-----------
Confidence 45667777777666433333 221110 0 011111223334445678999999999999964321
Q ss_pred HHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 220 HANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 220 ~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..| ..+...+ .|.... +.....|+.||.|+++||++.
T Consensus 130 --iea--e~r~dgs-rRttrY--dIDmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 130 --IEA--EERTDGS-RRTTRY--DIDMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred --eec--eecCCcc-ccceee--cccceeeeeecchhhhCCccc
Confidence 011 0111111 122111 235688999999999999876
No 73
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=97.88 E-value=1.3e-05 Score=87.45 Aligned_cols=83 Identities=22% Similarity=0.332 Sum_probs=65.4
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC----------Ceeecccccccc--CCCCceEEeeC
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----------GCNGLACLTKIS--PSGSASTITPL 136 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in----------G~~~lAC~t~v~--~g~~~~~iepl 136 (279)
.+++++ ++||||.||+... -...+.+|.+|.||+|+|.|| |+++.||.+++. +|.+.+|||.|
T Consensus 14 ~~~~~~-~~~ll~~LR~~~~----l~gtk~gC~~G~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~v~TvEgl 88 (1330)
T TIGR02969 14 EKNVDP-ETMLLPYLRKKLR----LTGTKYGCGGGGCGACTVMISRYNPSTKSIRHHPVNACLTPICSLYGAAVTTVEGI 88 (1330)
T ss_pred eccCCC-CCcHHHHHHhhcC----CCCCCCCcCCCCCCCcEEEECCccccccccCCcEEehhHHHHHHhCCCEEEecCCc
Confidence 346677 8999999998431 245788999999999999998 578999999998 78889999999
Q ss_pred CC----Ccchhhhhhccchhhhhh
Q 023670 137 PH----MFVIKDLVVDMTNFYNQY 156 (279)
Q Consensus 137 ~~----~~vikDLvvD~~~~~~~~ 156 (279)
.+ +..++.-.+|.+.+.+.|
T Consensus 89 ~~~~~~l~pvq~a~~~~~~~QCGf 112 (1330)
T TIGR02969 89 GSTRTRLHPVQERIAKCHGTQCGF 112 (1330)
T ss_pred CCCCCCCCHHHHHHHHcCCCcCCC
Confidence 74 233566677887766644
No 74
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.88 E-value=2.2e-06 Score=60.49 Aligned_cols=52 Identities=23% Similarity=0.491 Sum_probs=25.4
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC-CC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK-GL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~-gi 263 (279)
+.++||.||.|+.+||..... ++.+ + .+. . + ......|+.||.|+.+||+ ++
T Consensus 4 d~~~Ci~Cg~C~~~Cp~~~~~------------~i~~--~-~~~----~---~--~v~~~~C~GCg~C~~~CPv~~A 56 (59)
T PF14697_consen 4 DEDKCIGCGKCVRACPDGAID------------AIEV--D-EGK----K---V--PVNPDKCIGCGLCVKVCPVKDA 56 (59)
T ss_dssp -TTT----SCCCHHCCCCS-S-------------ECC--T-TTT----S---S--ECE-TT--S-SCCCCCSSSTTS
T ss_pred CcccccChhhHHhHcCcccee------------eEEe--c-CCe----e---E--EeccccCcCcCcccccCCCccC
Confidence 457899999999999963211 1111 0 100 0 0 1234689999999999996 64
No 75
>PLN03136 Ferredoxin; Provisional
Probab=97.86 E-value=0.00011 Score=61.40 Aligned_cols=37 Identities=38% Similarity=0.579 Sum_probs=30.3
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI 112 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i 112 (279)
++++++ |.+||||+.+.|. . ..++|+.|.||+|.+.|
T Consensus 67 ~~~~~~-g~tILdAa~~~Gi-~-----lp~sCr~G~CGtC~~~l 103 (148)
T PLN03136 67 EVECEE-DVYVLDAAEEAGI-D-----LPYSCRAGSCSSCAGKV 103 (148)
T ss_pred EEEeCC-CCcHHHHHHHcCC-C-----CCcCCCCccCCCCEEEE
Confidence 345556 8999999999983 2 44779999999999997
No 76
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=97.86 E-value=1.5e-05 Score=75.75 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=50.8
Q ss_pred HhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC-
Q 023670 183 RAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK- 261 (279)
Q Consensus 183 ~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~- 261 (279)
.+....+..|..|..|...||+... . - .+.-. + +..+. +....|++||.|...||.
T Consensus 26 ~e~~r~~~iC~~Cr~C~~~CpvfP~---------l-~--~r~~~---~---~~d~~-----~~a~~C~~Cg~C~~~CP~a 82 (389)
T PRK15033 26 AEVARQMQICNACRYCEGFCAVFPA---------M-T--RRLEF---G---KADIH-----YLANLCHNCGACLHACQYA 82 (389)
T ss_pred HHHHHHhHhCCCCCCccccCCCchh---------h-h--hhhcC---C---hhhhH-----HHHHhCcCcccccccCcCC
Confidence 3445567899999999999998731 1 0 01100 0 01111 134589999999999999
Q ss_pred -----CCChHHHHHHHHHHHHh
Q 023670 262 -----GLNPGKQIINIKQLQLK 278 (279)
Q Consensus 262 -----gi~~~~~I~~lR~~~~~ 278 (279)
+|++.+++.++|...-+
T Consensus 83 pPhef~i~ip~~l~~~r~~sy~ 104 (389)
T PRK15033 83 PPHEFAVNVPKAMAQVRLETYQ 104 (389)
T ss_pred CCcccCCCHHHHHHHHHHHHHH
Confidence 99999999999987643
No 77
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=97.86 E-value=3e-06 Score=73.23 Aligned_cols=61 Identities=21% Similarity=0.418 Sum_probs=36.1
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+.++||.||.|+.+||.....- .+.. +... .......+ ......|+.||.|+++||+++
T Consensus 58 ~~~~~kCi~Cg~C~~aCP~~ai~~-----------~~~~--~~~~--~~~~~~~~--~id~~~Ci~Cg~Cv~aCP~~A 118 (183)
T TIGR00403 58 HFEFDKCIACEVCVRVCPINLPVV-----------DWEF--NKAI--KKKQLKNY--SIDFGVCIFCGNCVEYCPTNC 118 (183)
T ss_pred EeCcccCcCcCChhhhCCCCcccc-----------cccc--cccc--ccccccee--ecCcccccCcCchhhhcCCCC
Confidence 356789999999999999753100 0000 0000 00000001 124578999999999999875
No 78
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=97.73 E-value=3.7e-05 Score=75.70 Aligned_cols=73 Identities=25% Similarity=0.428 Sum_probs=49.3
Q ss_pred hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
......+|..||-|..+||... --|.++-.+ .++ + .+.++.+ ...|..||+|..+||++|+
T Consensus 395 ~~e~a~kc~~cG~C~~~CP~~l------~i~eam~~A----~~G-d---~~~l~~l-----~d~C~~C~rCEq~Cpk~ip 455 (772)
T COG1152 395 FMEYARKCTYCGNCMRACPNEL------DIPEAMEYA----AKG-D---FSKLEDL-----HDVCIGCGRCEQVCPKNIP 455 (772)
T ss_pred HHHHHHhcccccchhccCCccc------chHHHHHHh----hcC-C---hHHHHHH-----HHHhhhhhhhhhhCcccCc
Confidence 3445689999999999999542 112232222 221 1 1233333 4579999999999999999
Q ss_pred hHHHHHHHHHHH
Q 023670 265 PGKQIINIKQLQ 276 (279)
Q Consensus 265 ~~~~I~~lR~~~ 276 (279)
+..+|.+.-+..
T Consensus 456 i~nm~~~a~~~~ 467 (772)
T COG1152 456 ILNMIEKAAQKR 467 (772)
T ss_pred hhhHHHHHHHHh
Confidence 999998776543
No 79
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=97.70 E-value=0.0001 Score=69.46 Aligned_cols=77 Identities=25% Similarity=0.453 Sum_probs=50.2
Q ss_pred cCcccCcccCCCCCcccCCCcccCHHHHH---HHHHHhhcCcchhHHHHHHHhhc--------ccCccCchhhhhhhhhC
Q 023670 191 ECILCACCSTSCPSYWWTSEAYLGPAALL---HANRWISDSRDEYTKERLEAIDD--------EFKLYRCHTILNCARAC 259 (279)
Q Consensus 191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~---~a~r~~~d~r~~~~~erl~~l~~--------~~~~~~C~~Cg~C~~vC 259 (279)
.|+.|..|+. ||..... |..+. .+..+ +.-+ ..+-+...+.. ......|+.||.|...|
T Consensus 294 ~Ct~C~yC~P-CP~gInI------P~~f~lyN~~~~~--~~~~-~~~~~Y~~l~~~~~~~~~~~g~as~CieCgqCl~~C 363 (391)
T COG1453 294 PCTGCRYCLP-CPSGINI------PEIFRLYNLAVAF--DDVD-YAKFRYNMLENGGHWFPGPKGKASDCIECGQCLEKC 363 (391)
T ss_pred CCccccccCc-CCCCCCh------HHHHHHHHHHHhh--ccch-hhHHHHHHHhccCccCCCCcccccccchhhhhhhcC
Confidence 4999999999 9975422 22221 11111 1111 11223433332 12368999999999999
Q ss_pred CCCCChHHHHHHHHHHHH
Q 023670 260 PKGLNPGKQIINIKQLQL 277 (279)
Q Consensus 260 P~gi~~~~~I~~lR~~~~ 277 (279)
|.++++.++++++++.+-
T Consensus 364 Pq~l~Ip~~Lk~v~~~le 381 (391)
T COG1453 364 PQHLDIPELLKEVHEELE 381 (391)
T ss_pred CCcCcHHHHHHHHHHHhc
Confidence 999999999999987763
No 80
>PTZ00038 ferredoxin; Provisional
Probab=97.69 E-value=7.7e-05 Score=64.66 Aligned_cols=36 Identities=33% Similarity=0.627 Sum_probs=29.8
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI 112 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i 112 (279)
+++++ |.||||||++.|. ....+|+.|.||.|.|+|
T Consensus 109 ~~v~~-geTILdAae~aGI------~lp~sCr~G~CGtCkvrV 144 (191)
T PTZ00038 109 IECDE-DEYILDAAERQGV------ELPYSCRGGSCSTCAAKL 144 (191)
T ss_pred EEeCC-CCcHHHHHHHcCC------CCCcCCCCccCCCCEeEE
Confidence 45556 8999999999984 245789999999999997
No 81
>PTZ00490 Ferredoxin superfamily; Provisional
Probab=97.65 E-value=0.0002 Score=59.50 Aligned_cols=53 Identities=15% Similarity=0.326 Sum_probs=37.3
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID 113 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in 113 (279)
.++|.|. |++. ..++|++++ |.|||++|+..+... ....|. .|.||.|.|.|.
T Consensus 35 ~v~I~~~--~~dG------~~~~v~~~~-G~sLLeal~~~~~i~-----i~~~CGG~g~CgtC~V~V~ 88 (143)
T PTZ00490 35 KVKVCVK--KRDG------THCDVEVPV-GMSLMHALRDVAKLD-----VEGTCNGCMQCATCHVYLS 88 (143)
T ss_pred cEEEEEE--cCCC------CEEEEEECC-CccHHHHHHHcCCCC-----ccccCCCCCEeCCCEEEEC
Confidence 4555554 4433 456788888 999999999964222 334575 699999999994
No 82
>COG0633 Fdx Ferredoxin [Energy production and conversion]
Probab=97.64 E-value=0.0001 Score=57.74 Aligned_cols=38 Identities=26% Similarity=0.580 Sum_probs=30.6
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID 113 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in 113 (279)
.+..+. |.||||+|.+.|.. ..++|+.|.||+|.|+|.
T Consensus 16 ~~~~~~-g~tiLe~a~~~gi~------i~~~C~~g~C~TC~v~v~ 53 (102)
T COG0633 16 TEAVNE-GETLLEAAERNGIP------IEYACRGGACGTCRVKVL 53 (102)
T ss_pred EEeccC-CcHHHHHHHHCCCc------ceecCCCCccCccEEEEe
Confidence 344444 89999999999842 557899999999999975
No 83
>PRK13984 putative oxidoreductase; Provisional
Probab=97.61 E-value=5.2e-05 Score=76.47 Aligned_cols=32 Identities=22% Similarity=0.374 Sum_probs=28.8
Q ss_pred CccCchhhhhhhhhCCCCCChHHHHHHHHHHH
Q 023670 245 KLYRCHTILNCARACPKGLNPGKQIINIKQLQ 276 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~ 276 (279)
..++|+.||.|..+||.++++.+.|..+|+..
T Consensus 183 ~~~~C~~Cg~C~~~CP~~~~i~~~~~~i~~~~ 214 (604)
T PRK13984 183 EAARCVECGICTDTCPAHMDIPQYIKAIYKDD 214 (604)
T ss_pred hhhhhcCCCcccccCCCCCCHHHHHHHHHcCC
Confidence 35889999999999999999999999998643
No 84
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=97.52 E-value=2.2e-05 Score=66.44 Aligned_cols=59 Identities=31% Similarity=0.556 Sum_probs=34.8
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+..+||.||.|..+||.....-. .....+++. ..... ......|+.||.|+.+||.++
T Consensus 55 ~~~~~Ci~C~~C~~~CP~~ai~~~-----------~~~~~~g~~-----~~~~~--~i~~~~C~~Cg~Cv~~CP~~A 113 (164)
T PRK05888 55 NGEERCIACKLCAAICPADAITIE-----------AAEREDGRR-----RTTRY--DINFGRCIFCGFCEEACPTDA 113 (164)
T ss_pred CCCccCCcccChHHHcCccccccc-----------cccCCCCcc-----cceee--ecCCCcCcccCcchhhcCcCc
Confidence 345699999999999995421100 000000000 00001 124689999999999999875
No 85
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=97.50 E-value=2.4e-05 Score=66.51 Aligned_cols=60 Identities=25% Similarity=0.438 Sum_probs=35.2
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+.++|+.||.|+.+||..... ..+++..+.+. ..+..+ ......|+.||.|+.+||.++
T Consensus 56 ~~~~~Ci~Cg~C~~aCP~~~~~-----------~~~~~~~~~~~----~~~~~~--~id~~~C~~Cg~C~~~CP~~A 115 (167)
T CHL00014 56 FEFDKCIACEVCVRVCPIDLPV-----------VDWKLETDIRK----KRLLNY--SIDFGVCIFCGNCVEYCPTNC 115 (167)
T ss_pred eccccCCCcCcHHHhCCCCCcc-----------ccccccccccc----cccccc--cCCCCcCcCccchHhhcCcCc
Confidence 4567899999999999964210 00111001010 011111 123467999999999999874
No 86
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=97.50 E-value=1.9e-05 Score=73.55 Aligned_cols=63 Identities=29% Similarity=0.519 Sum_probs=36.4
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+..+||.|+.|..+||..... ..++...+.++.. .+...+ ......|..||.|+.+||++.
T Consensus 243 ~id~~~Ci~C~~C~~~CP~~ai~-----------~~~~~~~~~~~~~--~~~~~~--~~d~~~C~gCg~C~~~CP~~A 305 (312)
T PRK14028 243 VIDHSKCIMCRKCWLYCPDDAII-----------EAWREAEGPRGRK--FRMKMI--DFDYQYCKGCGVCAEVCPTGA 305 (312)
T ss_pred EECcccCcCcccccccCChhhhh-----------cccccccCccccc--ccceee--cCCcccCcCcCchhhhCCHhh
Confidence 34678999999999999965321 1111111111100 011111 123578999999999999754
No 87
>CHL00065 psaC photosystem I subunit VII
Probab=97.47 E-value=2.2e-05 Score=58.55 Aligned_cols=56 Identities=25% Similarity=0.558 Sum_probs=33.8
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..++||.||.|+.+||.....-. .+ +.... .. .........|+.||.|+.+||.++
T Consensus 7 ~~~~Ci~Cg~C~~~CP~~~i~~~------------~~--~~~~~---~~---~~~~~~~~~C~~C~~C~~~CP~~A 62 (81)
T CHL00065 7 IYDTCIGCTQCVRACPTDVLEMI------------PW--DGCKA---KQ---IASAPRTEDCVGCKRCESACPTDF 62 (81)
T ss_pred ccccCCChhHHHHHCCccchhhe------------ec--ccccc---cc---ccccCCCCcCCChhhhhhhcCccc
Confidence 45689999999999995421100 00 00000 00 000113468999999999999986
No 88
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=97.45 E-value=0.00058 Score=64.30 Aligned_cols=38 Identities=29% Similarity=0.772 Sum_probs=30.7
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG 114 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG 114 (279)
+++++ +.||||+|.+.|. ....+|+.|+||+|.+.+ .|
T Consensus 277 ~~~~~-~~slL~~~~~~gi------~~~~~C~~G~Cg~C~~~~~~G 315 (352)
T TIGR02160 277 SSLSR-DESVLDAALRARP------DLPFACKGGVCGTCRAKVLEG 315 (352)
T ss_pred EecCC-CCcHHHHHHHcCC------CCcCCCCCccCCCCEEEEecc
Confidence 45566 8999999999883 245789999999999986 44
No 89
>PLN02906 xanthine dehydrogenase
Probab=97.41 E-value=0.00012 Score=79.95 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=59.4
Q ss_pred chHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC------C----eeecccccccc--CCCCceEEeeCCC----Cc
Q 023670 77 PMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID------G----CNGLACLTKIS--PSGSASTITPLPH----MF 140 (279)
Q Consensus 77 ~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in------G----~~~lAC~t~v~--~g~~~~~iepl~~----~~ 140 (279)
+||||.||+.+ . ...+.+|.+|.||+|+|.|| | +++.||.+++. +|.+.+|||.|.. +.
T Consensus 2 ~~ll~~LR~~~--l---~g~k~gC~~g~CGaCtv~~~~~~~~~~~~~~~~v~sC~~~~~~~~g~~i~Tvegl~~~~~~~~ 76 (1319)
T PLN02906 2 QTLLEYLRDLG--L---TGTKLGCGEGGCGACTVMVSHYDRKTGKCVHYAVNACLAPLYSVEGMHVITVEGIGNRRDGLH 76 (1319)
T ss_pred CcHHHHHHhCC--C---CCCCCCcCCCCCCCeEEEECCccccCCccCCeEehhhHHHHHHhCCCEEEecCCCCCCCCCCC
Confidence 68999999843 2 45788999999999999999 5 58899999998 7888899999973 23
Q ss_pred chhhhhhccchhhhhh
Q 023670 141 VIKDLVVDMTNFYNQY 156 (279)
Q Consensus 141 vikDLvvD~~~~~~~~ 156 (279)
.++.-+++.+.+.+.|
T Consensus 77 ~vq~a~~~~~~~QCG~ 92 (1319)
T PLN02906 77 PVQEALASMHGSQCGF 92 (1319)
T ss_pred HHHHHHHHcCCCcCCC
Confidence 3566667777766543
No 90
>PRK02651 photosystem I subunit VII; Provisional
Probab=97.38 E-value=4.1e-05 Score=56.95 Aligned_cols=56 Identities=25% Similarity=0.538 Sum_probs=34.3
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..++||.||.|+.+||.......+ + +.... .. +........|+.||.|+.+||.++
T Consensus 7 ~~~~Ci~C~~C~~~CP~~~i~~~~------------~--~~~~~---~~---~~~~~~~~~C~~Cg~C~~~CP~~a 62 (81)
T PRK02651 7 IYDTCIGCTQCVRACPLDVLEMVP------------W--DGCKA---GQ---IASSPRTEDCVGCKRCETACPTDF 62 (81)
T ss_pred ccccCCCcchHHHHCCccceeccc------------c--ccccc---Cc---ccccCCCCcCCChhhhhhhcCCCc
Confidence 457899999999999954321100 0 00000 00 001123468999999999999875
No 91
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=97.38 E-value=1.9e-05 Score=59.92 Aligned_cols=70 Identities=24% Similarity=0.314 Sum_probs=36.2
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+..+||.||.|+.+||....... ..+...+.. ..........+ ..........|+.||.|+.+||.++
T Consensus 17 ~i~~~~Ci~C~~Cv~~CP~~~i~~~-~~~~~~~~~-----~~~~~~~~~~~--~~~~~i~~~~C~~Cg~C~~~CP~~A 86 (91)
T TIGR02936 17 SIDQEKCIGCGRCYKVCGRDVLTLK-GINEEGELV-----ASDDDDDEIER--KVMVVANPGNCIGCGACARVCPKKC 86 (91)
T ss_pred EECHhHCCCcchHHHHcChhhceee-ccccccccc-----ccccccccccc--ceeeecCCccCcChhhhhhhCCHhH
Confidence 4567899999999999995422100 000000000 00000000000 0000124578999999999999764
No 92
>PRK05713 hypothetical protein; Provisional
Probab=97.37 E-value=0.00027 Score=65.60 Aligned_cols=57 Identities=26% Similarity=0.437 Sum_probs=43.1
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS 129 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~ 129 (279)
.+|++++ |.|||||+.+.|. . ...+|+.|.||+|.|.| .|. .+|+|.+.+..
T Consensus 9 ~~~~~~~-g~tlL~a~~~~gi-~-----~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~--- 78 (312)
T PRK05713 9 RRWSVPA-GSNLLDALNAAGV-A-----VPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVG--- 78 (312)
T ss_pred eEEEECC-CCcHHHHHHHcCC-C-----CCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECC---
Confidence 3466667 8999999999884 2 34679999999999997 342 35899999883
Q ss_pred ceEEe
Q 023670 130 ASTIT 134 (279)
Q Consensus 130 ~~~ie 134 (279)
.++|+
T Consensus 79 d~~i~ 83 (312)
T PRK05713 79 DLRVE 83 (312)
T ss_pred ceEEE
Confidence 35555
No 93
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=97.32 E-value=4.6e-05 Score=56.69 Aligned_cols=57 Identities=21% Similarity=0.433 Sum_probs=34.7
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
....+||.||.|+.+||...+.- +..+......+. + ......|+.||.|..+||+++
T Consensus 5 ~~~~~Ci~C~~Cv~~CP~~~i~~-----------------~~~~~~~~~~~~-~--~~~~~~C~~Cg~C~~~CP~~a 61 (80)
T TIGR03048 5 KIYDTCIGCTQCVRACPTDVLEM-----------------VPWDGCKAGQIA-S--APRTEDCVGCKRCESACPTDF 61 (80)
T ss_pred ecCCcCcCcchHHHHCCccceee-----------------eccccccccccc-C--cCCCCcCcChhHHHHhcCccc
Confidence 45678999999999999542210 000000000000 1 113468999999999999976
No 94
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=97.32 E-value=3.7e-05 Score=66.26 Aligned_cols=55 Identities=27% Similarity=0.561 Sum_probs=34.9
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+...||.||.|+.+||..... ...+... . .+ .+ ......|+.||.|+.+||.++
T Consensus 35 ~d~~~Ci~Cg~Cv~aCP~~Ai~---------------~~~~~~~-~--~~--~~--~~~~~~C~~Cg~C~~~CPt~A 89 (181)
T PRK08222 35 LMPSQCIACGACTCACPANALT---------------IQTDDQQ-N--SR--TW--QLYLGRCIYCGRCEEVCPTRA 89 (181)
T ss_pred eChhhCcchhHHHHhCCccceE---------------ccccccc-C--cc--ce--eeccCcCcCCCCcccccCcCe
Confidence 4568899999999999964321 0000000 0 00 01 123578999999999999874
No 95
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=97.31 E-value=6.1e-05 Score=60.45 Aligned_cols=52 Identities=25% Similarity=0.580 Sum_probs=34.7
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+..+|+.||.|+.+||..... + ++.. .. + ......|+.||.|+.+||.++
T Consensus 38 ~i~~~~Ci~C~~C~~~CP~~ai~---------------~--~~~~----~~---~--~i~~~~C~~Cg~Cv~~CP~~A 89 (120)
T PRK08348 38 LYDVDKCVGCRMCVTVCPAGVFV---------------Y--LPEI----RK---V--ALWTGRCVFCGQCVDVCPTGA 89 (120)
T ss_pred EECcccCcCcccHHHHCCccceE---------------c--cccc----cc---e--EecCCcCcChhhhHHhCCcCc
Confidence 45678999999999999953211 0 0000 00 0 113467999999999999875
No 96
>PLN00071 photosystem I subunit VII; Provisional
Probab=97.30 E-value=4.8e-05 Score=56.67 Aligned_cols=56 Identities=23% Similarity=0.465 Sum_probs=33.6
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
...+|+.||.|+.+||.....-.. .++.. . .. .........|+.||.|+.+||.++
T Consensus 7 ~~~~C~~C~~C~~~CP~~~i~~~~--------------~~~~~--~-~~---~~~~~~~~~C~~Cg~C~~~CP~~A 62 (81)
T PLN00071 7 IYDTCIGCTQCVRACPTDVLEMIP--------------WDGCK--A-KQ---IASAPRTEDCVGCKRCESACPTDF 62 (81)
T ss_pred cCCcCcChhHHHHHCCccceeeec--------------ccccc--c-cc---ccCcCCCCcCcChhhHHhhcCCcc
Confidence 457899999999999954211000 00000 0 00 000113467999999999999885
No 97
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=97.28 E-value=0.00042 Score=65.20 Aligned_cols=52 Identities=29% Similarity=0.628 Sum_probs=39.8
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-------------------eecccccccc
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-------------------NGLACLTKIS 125 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-------------------~~lAC~t~v~ 125 (279)
...+++++ |.||||||.+.|. ....+|+.|.||+|.+.+ .|. .+|+|.+.+.
T Consensus 14 ~~~~~~~~-g~tlL~a~~~~g~------~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~ 85 (340)
T PRK11872 14 TLFFPVGK-DELLLDAALRNGI------NLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVK 85 (340)
T ss_pred EEEEEeCC-CCcHHHHHHHcCC------CCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEEC
Confidence 34455567 8999999999883 355789999999999986 332 2489988776
No 98
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=97.28 E-value=3.5e-05 Score=61.77 Aligned_cols=58 Identities=26% Similarity=0.497 Sum_probs=34.4
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..++||.||.|+.+||....... .+...... .....+ ......|..||.|+.+||.++
T Consensus 41 ~~~~Ci~C~~C~~~CP~~ai~~~------------~~~~~~~~----~~~~~~--~~~~~~C~~Cg~Cv~~CP~~a 98 (122)
T TIGR01971 41 GEEKCIGCTLCAAVCPADAIRVV------------PAEGEDGK----RRLKFY--QINFGRCIFCGLCEEACPTDA 98 (122)
T ss_pred CcCcCcCcchhhhhcCHhHeeee------------eeccCCCc----eecccc--eECcccCCCCCchhhhCCCcc
Confidence 34889999999999995432100 00000000 000001 123577999999999999984
No 99
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=97.25 E-value=0.00041 Score=65.00 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=38.3
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-------------------eecccccccc
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-------------------NGLACLTKIS 125 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-------------------~~lAC~t~v~ 125 (279)
+++++ |.||||||.+.|. ....+|+.|.||+|.|.+ +|. .+|+|.+.+.
T Consensus 14 ~~~~~-g~tlL~a~~~~gi------~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~ 82 (339)
T PRK07609 14 FTAEP-DETILDAALRQGI------HLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPL 82 (339)
T ss_pred EEeCC-CCcHHHHHHHcCC------CCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEEC
Confidence 45557 8999999999883 245789999999999985 331 2589988887
No 100
>PRK06273 ferredoxin; Provisional
Probab=97.24 E-value=3.5e-05 Score=65.54 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=35.5
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+...|+.||.|..+||...... ...+|.... .+... . ..-......|+.||.|..+||.++
T Consensus 46 id~~~CigCg~C~~aCP~~AI~~-~~~ep~~~~-------~~~~~---~----~~~~Id~~kCi~Cg~C~~aCP~~A 107 (165)
T PRK06273 46 VFEELCIGCGGCANVCPTKAIEM-IPVEPVKIT-------EGYVK---T----KIPKIDYEKCVYCLYCHDFCPVFA 107 (165)
T ss_pred ECchhCcChhHHHHhcCccceee-ecccccchh-------ccccc---c----cceecccccCcCCCCcchhCCHhh
Confidence 35668999999999999643210 000110000 00000 0 000123578999999999999985
No 101
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=97.24 E-value=6e-05 Score=81.35 Aligned_cols=71 Identities=20% Similarity=0.350 Sum_probs=38.8
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHH-H---hhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANR-W---ISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r-~---~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
.+..+||.||.|+.+||..... ..++++..+..+-. + ...+++. ... ...-....+.|+.||.|+.+||.+
T Consensus 680 ~~~~~Ci~Cg~C~~vCP~~ai~-~~~~~~~~~~~ap~~~~~~~~~~~~~---~~~-~~~i~i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 680 WVPDNCIQCNQCAFVCPHAAIR-PKLADEEELENAPAGFKSLDAKGKEL---EGM-KFRIQISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred eccccCCCccchHHhcChhhcc-ccccchhhhhcCcccchhhhhhcccc---ccc-ceeEEeccccCcCccchhhhcCCC
Confidence 4567899999999999976532 12222222111100 0 0000000 000 000123568999999999999987
No 102
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=97.22 E-value=7e-05 Score=58.56 Aligned_cols=60 Identities=18% Similarity=0.316 Sum_probs=35.6
Q ss_pred hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
....+.+.||.||.|+.+||..... +..++.... ... . .......|+.||.|+.+||.+.
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~~ai~---------------~~~~~~~~~-~~~---~-~~i~~~~C~~C~~C~~~CP~~A 69 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPAGVLA---------------MRIDPHAVL-GKM---I-KVVHPESCIGCRECELHCPDFA 69 (103)
T ss_pred CeEECcccccCCcchhhhcChhhhc---------------ccccccccc-Cce---e-eEeCCccCCCcCcchhhCChhh
Confidence 3445678999999999999964311 000000000 000 0 0112467999999999999664
No 103
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=97.16 E-value=0.00018 Score=62.52 Aligned_cols=52 Identities=19% Similarity=0.394 Sum_probs=34.6
Q ss_pred hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+.+.++||.||.|+.+||.... . ...+.. . ......|+.||.|+.+||+++
T Consensus 109 ~~id~~~Ci~Cg~Cv~aCp~~ai-----------~------~~~~~~------~----~v~~~~C~~Cg~Cv~vCP~~A 160 (191)
T PRK05113 109 AFIDEDNCIGCTKCIQACPVDAI-----------V------GATKAM------H----TVISDLCTGCDLCVAPCPTDC 160 (191)
T ss_pred eEEeCCcCCCCChhhhhCCHhhh-----------e------cccCCc------e----eecCCcCCchHHHHHHcCcCc
Confidence 34467899999999999994211 0 001110 0 012467999999999999876
No 104
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=97.16 E-value=0.00022 Score=54.18 Aligned_cols=54 Identities=20% Similarity=0.358 Sum_probs=35.0
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+..+||.||.|+.+||..... . ..... . .... ......|+.||.|..+||.++
T Consensus 26 ~~~~~Ci~Cg~C~~~CP~~ai~---------------~--~~~~~---~-~~~~--~~~~~~C~~C~~C~~~Cp~~a 79 (99)
T COG1145 26 IDAEKCIGCGLCVKVCPTGAIE---------------L--IEEGL---L-LPEV--VIDPDLCVLCGACLKVCPVDA 79 (99)
T ss_pred eCccccCCCCCchhhCCHHHhh---------------c--ccccC---c-cceE--EEccccCccccchHhhCCcCC
Confidence 3456799999999999965211 0 00000 0 0001 123578999999999999998
No 105
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.13 E-value=0.00024 Score=65.00 Aligned_cols=54 Identities=19% Similarity=0.413 Sum_probs=34.3
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+.++|+.|+.|..+||...... |. ..+.+. . . ......|+.||+|+++||+++
T Consensus 205 ~d~~~C~~C~~C~~~CP~~~i~~-----~~---------~~~~~~----~---~--~i~~~~C~~Cg~Cv~~CP~~A 258 (271)
T PRK09477 205 HDRQKCTRCMDCFHVCPEPQVLR-----PP---------LKGKQS----P---S--QVTSGDCITCGRCIDVCSEDV 258 (271)
T ss_pred CCcccCcccCCcCCcCCCcceec-----cc---------ccCCCc----c---c--eeCcccCcChhHHHhhcCccc
Confidence 45688999999999999642110 00 001110 0 0 012467999999999999875
No 106
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=97.13 E-value=0.00021 Score=64.76 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=33.6
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+.++|+.||.|..+||+..... .. .++.. . . ......|+.||+|.++||+++
T Consensus 199 ~~~~C~~C~~C~~vCP~~~vl~--------------~~--~~~~~---~---~--~i~~~~C~~Cg~Cv~~CP~~A 250 (255)
T TIGR02163 199 DREKCTNCMDCFNVCPEPQVLR--------------MP--LKKGG---S---T--LVLSGDCTLCGRCIDVCHEDV 250 (255)
T ss_pred ccccCeEcCCccCcCCCCceee--------------cc--ccCCC---c---e--EeccccccchhHHHHhCCccc
Confidence 4689999999999999642110 00 00000 0 0 112457999999999999875
No 107
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=97.07 E-value=0.00016 Score=59.25 Aligned_cols=51 Identities=27% Similarity=0.490 Sum_probs=34.3
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+.++||.||.|..+||.... . . ++.. . . ......|+.||.|+.+||.++
T Consensus 55 ~~d~~~Ci~C~~C~~~CP~~ai-----------~------~--~~~~---~---~--~i~~~~C~~Cg~Cv~vCP~~a 105 (133)
T PRK09625 55 VHNNEICINCFNCWVYCPDAAI-----------L------S--RDKK---L---K--GVDYSHCKGCGVCVEVCPTNP 105 (133)
T ss_pred EEehhHCcChhhHHHhCCHhhe-----------E------e--cCCc---e---E--EeCcCcCcChhHHHHHCCcCc
Confidence 3567899999999999994311 0 0 1100 0 0 012467999999999999996
No 108
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=97.04 E-value=0.00014 Score=51.94 Aligned_cols=64 Identities=19% Similarity=0.497 Sum_probs=33.2
Q ss_pred cCcccCcccCCCCCcccCCC---cccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 191 ECILCACCSTSCPSYWWTSE---AYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 191 ~CI~CG~C~~~CP~~~~~~~---~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
.|+.||+|+.+||......+ .+..+.. +.+...+.... +.. ...-...+.+..||.|..+||.+
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~~~~~~~~~~----~~~~~~~~~~~---~~~-~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGEDEPTWEPKGC----WSYNNPGVKKW---RID-WEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred CCcchhHHHHhCcHhhccCCCcCeeecCcc----hhccCccccCc---cch-HHhhhcCCCccccchhhccCCCC
Confidence 49999999999997654322 1111100 00000111100 000 11112346778999999999964
No 109
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=97.03 E-value=0.00011 Score=70.08 Aligned_cols=63 Identities=19% Similarity=0.424 Sum_probs=36.2
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHH-HhhcccCccCchhhhhhhhhCCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLE-AIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~-~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
.+.++||.||.|+.+||...... ..+...++.. .++. ..........|+.||.|+.+||.++-
T Consensus 4 id~~kCi~Cg~Cv~~CP~~ai~~-----------~~~~~~~~~~----~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai 67 (374)
T TIGR02512 4 RDMSKCIGCGRCVRACTNVQIVG-----------ALGFLNRGGK----TEVAPKFGRLLDESNCIGCGQCSLVCPVGAI 67 (374)
T ss_pred echhhCCcChHhhhhCCHhhccc-----------cccccccCCc----cccccccccccCcccCcCccCHHHhCCCChh
Confidence 45678999999999999653211 0000000000 0000 00011235789999999999998764
No 110
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.98 E-value=0.00028 Score=36.12 Aligned_cols=15 Identities=33% Similarity=0.911 Sum_probs=13.8
Q ss_pred chhhhhhhhhCCCCC
Q 023670 249 CHTILNCARACPKGL 263 (279)
Q Consensus 249 C~~Cg~C~~vCP~gi 263 (279)
|+.|+.|+++||+|+
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 789999999999985
No 111
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=96.96 E-value=0.00042 Score=63.62 Aligned_cols=67 Identities=24% Similarity=0.450 Sum_probs=41.3
Q ss_pred hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC-
Q 023670 185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL- 263 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi- 263 (279)
...+..+||.||.|+.+||..... +.+..+... . . ......|..||.|+.+||.++
T Consensus 43 ~~~~~~~C~~C~~C~~~Cp~~a~~-------------~~~~~~~~~-----~---~--~~~~~~C~~Cg~C~~~CP~~Ai 99 (295)
T TIGR02494 43 LLFKENRCLGCGKCVEVCPAGTAR-------------LSELADGRN-----R---I--IIRREKCTHCGKCTEACPSGAL 99 (295)
T ss_pred EEEccccCCCCchhhhhCcccccc-------------cccccCCCc-----c---e--eechhhcCchhHhhccCcHhHH
Confidence 345678999999999999954210 000001110 0 0 123568999999999999754
Q ss_pred -------ChHHHHHHHHH
Q 023670 264 -------NPGKQIINIKQ 274 (279)
Q Consensus 264 -------~~~~~I~~lR~ 274 (279)
+..+++..+.+
T Consensus 100 ~~~g~~~t~eel~~~i~~ 117 (295)
T TIGR02494 100 SIVGEEMTVEEVMRVVLR 117 (295)
T ss_pred hhhccCCcHHHHHHHHHH
Confidence 34555555554
No 112
>PRK06991 ferredoxin; Provisional
Probab=96.92 E-value=0.00027 Score=64.64 Aligned_cols=49 Identities=20% Similarity=0.424 Sum_probs=33.0
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
.+.+.||.||.|+.+||+.... ..... +. ......|+.||.|+.+||++
T Consensus 82 id~~~CigCg~Cv~aCP~~AI~-----------------~~~~~------~~----~v~~~~CigCg~Cv~vCP~~ 130 (270)
T PRK06991 82 IDEQLCIGCTLCMQACPVDAIV-----------------GAPKQ------MH----TVLADLCTGCDLCVPPCPVD 130 (270)
T ss_pred EccccCCCCcHHHHhCCHhhee-----------------ccccc------ce----eeCHhhCCCchHHHhhCCcC
Confidence 4567999999999999953210 00000 00 01235799999999999988
No 113
>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit. This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=96.91 E-value=0.0014 Score=63.09 Aligned_cols=52 Identities=25% Similarity=0.535 Sum_probs=39.5
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEEC-Ce-------------------eeccccccccC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNID-GC-------------------NGLACLTKISP 126 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~in-G~-------------------~~lAC~t~v~~ 126 (279)
.++++++ |.|||||+++.|. . ...+|+. |.||+|.|.|- |. .+|||.+.+..
T Consensus 42 ~~~~~~~-g~tlL~a~~~~gi-~-----i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rLaCq~~~~~ 114 (405)
T TIGR01941 42 KSITVPA-GGKLLNTLASNGI-F-----ISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRLSCQVKVKQ 114 (405)
T ss_pred eEEEECC-CChHHHHHHHcCC-C-----CcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEEEeeCEECC
Confidence 4456667 8999999999984 2 3356985 89999999973 42 26899998874
No 114
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=96.87 E-value=0.0011 Score=62.03 Aligned_cols=37 Identities=32% Similarity=0.694 Sum_probs=29.9
Q ss_pred eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG 114 (279)
Q Consensus 71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG 114 (279)
.+++ +.||||+|++.|. ....+|+.|+||+|.+.+ .|
T Consensus 261 ~~~~-~~~lL~~~~~~gi------~~~~~C~~G~Cg~C~~~~~~G 298 (332)
T PRK10684 261 YAPV-GTTLLEALESNKV------PVVAACRAGVCGCCKTKVVSG 298 (332)
T ss_pred EeCC-CChHHHHHHHcCC------CccCCCCCcCCCCCEEEEecC
Confidence 3346 7999999999883 255789999999999996 44
No 115
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=96.85 E-value=0.0002 Score=61.61 Aligned_cols=56 Identities=32% Similarity=0.519 Sum_probs=35.1
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+..+|+.||.|+.+||...... ..+... .. .. + ......|+.||.|+.+||.++
T Consensus 34 ~~d~~~C~~C~~Cv~~CP~~ai~~---------------~~~~~~-~~-~~---~--~i~~~~C~~Cg~C~~vCP~~A 89 (180)
T PRK12387 34 EYNPQQCIGCAACVNACPSNALTV---------------ETDLAT-GE-LA---W--EFNLGRCIFCGRCEEVCPTAA 89 (180)
T ss_pred EEChhhCcChhHHHHhcCccCeEe---------------eccccC-Cc-cc---c--eeccccCcCccchhhhcCcCc
Confidence 345789999999999999643210 000000 00 00 1 123578999999999999864
No 116
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.81 E-value=0.00028 Score=55.53 Aligned_cols=50 Identities=24% Similarity=0.418 Sum_probs=33.5
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+..+|+.|+.|+.+||..... .+..+ . . ......|+.||.|+.+||.++
T Consensus 48 ~d~~~Ci~C~~C~~~CP~~ai~-----------------~~~~~-----~---~--~id~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09624 48 FNRDKCVRCYLCYIYCPEPAIY-----------------LDEEG-----Y---P--VFDYDYCKGCGICANECPTKA 97 (105)
T ss_pred EChhHCcChhhHHhhCCHhhEE-----------------ecCCC-----c---E--EECchhCCCcCchhhhcCcCc
Confidence 4567899999999999953211 00000 0 0 012357999999999999875
No 117
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=96.81 E-value=0.00038 Score=67.39 Aligned_cols=55 Identities=27% Similarity=0.471 Sum_probs=33.6
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC-CC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK-GL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~-gi 263 (279)
.+.++|+.||.|..+||..... +..+..++.. . . ......|+.||.|+.+||. +.
T Consensus 339 ~~~~~C~~C~~C~~~Cp~~~~~------------ai~~~~~~~~-----~---~--~i~~~~C~~Cg~C~~~CP~~~A 394 (420)
T PRK08318 339 IDQDKCIGCGRCYIACEDTSHQ------------AIEWDEDGTR-----T---P--EVIEEECVGCNLCAHVCPVEGC 394 (420)
T ss_pred ECHHHCCCCCcccccCCCcchh------------heeeccCCCc-----e---E--EechhhCcccchHHhhCCCCCC
Confidence 4567999999999999953100 1111000110 0 0 1124669999999999998 54
No 118
>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional
Probab=96.80 E-value=0.002 Score=62.17 Aligned_cols=51 Identities=27% Similarity=0.601 Sum_probs=39.1
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEE-CCe-------------------eeccccccccC
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNI-DGC-------------------NGLACLTKISP 126 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~i-nG~-------------------~~lAC~t~v~~ 126 (279)
++++++ |.|||||+.+.|. . ...+|+. |.||+|.|.| .|. .+|||.+.+..
T Consensus 47 ~~~~~~-g~tLL~a~~~~gi-~-----i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~ 118 (409)
T PRK05464 47 TITVPA-GGKLLGALASNGI-F-----LSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQ 118 (409)
T ss_pred EEEECC-CchHHHHHHHcCC-C-----cccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECC
Confidence 456667 8999999999984 2 3357995 9999999997 452 25799998863
No 119
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.79 E-value=0.00053 Score=49.42 Aligned_cols=51 Identities=25% Similarity=0.539 Sum_probs=33.6
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
+..+|+.||.|+.+||...+. +..+.+. + .+ ......|+.||.|..+||++
T Consensus 6 d~~~C~~c~~C~~~CP~~~~~---------------~~~~~~~-----~--~~--~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 6 DYDKCIGCGICVEVCPAGVFD---------------LGEDEGG-----K--PV--VARPEECIDCGLCELACPVG 56 (68)
T ss_pred CchhcCCCChheeccChhhEE---------------eccccCc-----c--ee--EeccccCccchhhhhhCCcc
Confidence 456699999999999965321 0000000 0 01 12467899999999999998
No 120
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=96.75 E-value=0.00047 Score=58.52 Aligned_cols=52 Identities=21% Similarity=0.445 Sum_probs=34.7
Q ss_pred hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+.+.++|+.||.|..+||..... .+.+.. ..+ ....|+.||.|+.+||+++
T Consensus 108 ~~id~~~Ci~Cg~C~~aCp~~ai~-----------------~~~~~~------~~i----~~~~C~~Cg~Cv~~CP~~A 159 (165)
T TIGR01944 108 ALIDEDNCIGCTKCIQACPVDAIV-----------------GAAKAM------HTV----IADECTGCDLCVEPCPTDC 159 (165)
T ss_pred EEEECCcCCChhHHHHhCCccceE-----------------ecCCCc------eEe----ecccccChhHHHHhcCcCc
Confidence 345678999999999999943210 000100 001 2367999999999999876
No 121
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.74 E-value=0.00046 Score=54.22 Aligned_cols=51 Identities=22% Similarity=0.425 Sum_probs=34.0
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+.++|+.||.|+.+||.... .+..++. . ......|..||.|..+||.++
T Consensus 47 ~i~~~~Ci~C~~C~~~CP~~ai---------------~~~~~~~----------~--~id~~~C~~Cg~Cv~~CP~~A 97 (105)
T PRK09623 47 VVDESKCVKCYICWKFCPEPAI---------------YIKEDGY----------V--AIDYDYCKGCGICANECPTKA 97 (105)
T ss_pred EECcccCccccchhhhCCHhhe---------------EecCCCc----------E--EeCchhCcCcchhhhhcCcCc
Confidence 4567899999999999994211 0000000 0 113467999999999999875
No 122
>PRK08764 ferredoxin; Provisional
Probab=96.73 E-value=0.00049 Score=56.50 Aligned_cols=48 Identities=23% Similarity=0.465 Sum_probs=32.5
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.++||.||.|+.+||...+. + +.+. .. ......|+.||.|+.+||+++
T Consensus 84 ~~~Ci~C~~Cv~aCp~~ai~---------------~--~~~~------~~----~v~~~~C~~Cg~Cv~~CP~~A 131 (135)
T PRK08764 84 EADCIGCTKCIQACPVDAIV---------------G--GAKH------MH----TVIAPLCTGCELCVPACPVDC 131 (135)
T ss_pred cccCcCcchHHHhCChhhcC---------------c--cCCC------ce----eecCCcCcCccchhhhcCccc
Confidence 36899999999999943211 0 0110 00 012467999999999999986
No 123
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=96.73 E-value=0.00044 Score=53.87 Aligned_cols=51 Identities=24% Similarity=0.492 Sum_probs=33.5
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.|+.|+.+||...+.. ..++.. . + ......|+.||.|..+||.++
T Consensus 32 ~~~~C~~C~~C~~~CP~~~i~~---------------~~~g~~-----~---~--~i~~~~C~~Cg~C~~~CP~~A 82 (101)
T TIGR00402 32 FSAVCTRCGECASACENNILQL---------------GQQGQP-----T---V--EFDNAECDFCGKCAEACPTNA 82 (101)
T ss_pred CcCcCcChhHHHHHcCccccee---------------ccCCce-----e---e--EecCccCcCccChhhHCCccc
Confidence 4568999999999999643210 000000 0 0 112457999999999999876
No 124
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=96.71 E-value=0.00024 Score=67.01 Aligned_cols=61 Identities=28% Similarity=0.497 Sum_probs=35.0
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
+.+...|+.||.|..+||.....-.. ++ ...++.. ..........+.|+.||.|..+||..
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~--~~--------~~~~~~~------~~~~~~~~d~~~C~~Cg~C~~vCP~~ 68 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDK--KA--------EIRDPND------LELYEKGAAPNVCEGCLTCSRICPVV 68 (341)
T ss_pred EECcccCcChHHHHHhCCHhhheccc--Cc--------ccccccc------hhhhccCCCcCcCcCcCchhhhCCCC
Confidence 44567899999999999954211000 00 0000000 00011112467899999999999973
No 125
>PRK10194 ferredoxin-type protein; Provisional
Probab=96.60 E-value=0.00043 Score=58.48 Aligned_cols=18 Identities=22% Similarity=0.709 Sum_probs=15.3
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
...+||.||.|+.+||..
T Consensus 32 ~~~~C~~Cg~C~~aCp~~ 49 (163)
T PRK10194 32 FLTHCTRCDACINACENN 49 (163)
T ss_pred HhhhCcChhHHHHHcChh
Confidence 467899999999999954
No 126
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=96.57 E-value=0.00051 Score=50.55 Aligned_cols=51 Identities=22% Similarity=0.357 Sum_probs=34.0
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+..+|+.|+.|..+||..... +..++. . ......|..|+.|+.+||.++
T Consensus 21 ~i~~~~C~~C~~C~~~Cp~~ai~---------------~~~~~~----------~--~i~~~~C~~C~~C~~~CP~~A 71 (78)
T TIGR02179 21 VVDKEKCIKCKNCWLYCPEGAIQ---------------EDEGGF----------V--GIDYDYCKGCGICANVCPVKA 71 (78)
T ss_pred EEcCCcCcChhHHHhhcCccceE---------------ecCCCc----------E--EecCccCcCccchhhhCCccc
Confidence 44568899999999999954211 000000 0 012357999999999999875
No 127
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.55 E-value=0.00056 Score=38.52 Aligned_cols=19 Identities=32% Similarity=0.931 Sum_probs=16.7
Q ss_pred hcccccCcccCcccCCCCC
Q 023670 186 LDGMYECILCACCSTSCPS 204 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~ 204 (279)
+.|.++||.|+.|+.+||+
T Consensus 4 ~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 4 VIDLERCIGCGACEVACPV 22 (22)
T ss_pred EEccccccCchhHHHhhCc
Confidence 4578999999999999984
No 128
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=96.50 E-value=0.00043 Score=64.52 Aligned_cols=52 Identities=23% Similarity=0.496 Sum_probs=34.2
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+..+|+.||.|+.+||.... + +..+ .++. + ......|+.||.|+.+||+++
T Consensus 166 ~d~~~C~~Cg~C~~~Cp~~a~------~------ai~~-~~~~----------~--~id~~~C~~Cg~Cv~~CP~~A 217 (314)
T TIGR02912 166 YDADRCIGCGACVKVCKKKAV------G------ALSF-ENYK----------V--VRDHSKCIGCGECVLKCPTGA 217 (314)
T ss_pred eeCccCCcchHHHHhcChhhc------C------ceec-cCCe----------E--EeCCCcCcCcchhhhhCCHhh
Confidence 456789999999999995321 0 0111 0000 1 113568999999999999874
No 129
>PRK09898 hypothetical protein; Provisional
Probab=96.50 E-value=0.0016 Score=57.28 Aligned_cols=47 Identities=32% Similarity=0.658 Sum_probs=33.0
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+..+||.|+.|+.+||.... . .+... .....|+.||.|+++||+++
T Consensus 151 vd~~~CigC~~C~~aCP~~ai---------------~--~~~~~-------------~~~~kC~~Cg~Cv~~CP~~A 197 (208)
T PRK09898 151 VDHKRCIGCSACTTACPWMMA---------------T--VNTES-------------KKSSKCVLCGECANACPTGA 197 (208)
T ss_pred eccccCCCcCcccccCCCCCC---------------E--ecCCC-------------CcCCcCcChHHHHHhCCccc
Confidence 456789999999999995321 0 01010 02467999999999999986
No 130
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=96.44 E-value=0.0016 Score=61.24 Aligned_cols=32 Identities=19% Similarity=0.495 Sum_probs=24.9
Q ss_pred ccCchhhhh-------------hhhhCCCCC----ChHHHHHHHHHHHH
Q 023670 246 LYRCHTILN-------------CARACPKGL----NPGKQIINIKQLQL 277 (279)
Q Consensus 246 ~~~C~~Cg~-------------C~~vCP~gi----~~~~~I~~lR~~~~ 277 (279)
...|+.|+. |+.+||+|+ +..+++..+++++.
T Consensus 171 ~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~~el~~~a~~ri~ 219 (328)
T PRK10882 171 IHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTREELLAEAKRRLA 219 (328)
T ss_pred eeecccccccchhhhhcCCCChhhhhccccceEeccHHHHHHHHHHHHH
Confidence 578999999 999999876 35667777776654
No 131
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.39 E-value=0.0046 Score=64.20 Aligned_cols=45 Identities=24% Similarity=0.339 Sum_probs=29.7
Q ss_pred HHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccc
Q 023670 79 VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTK 123 (279)
Q Consensus 79 vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~ 123 (279)
+.++|++.|....=+|.-+..|..|+||+|.|.+.|...+.|..-
T Consensus 196 v~~~l~~~gv~~~~Sle~~M~CG~G~C~~C~v~~~~~~~~~C~dG 240 (752)
T PRK12778 196 VCLLTKKYGIPTIVSLNTIMVDGTGMCGACRVTVGGKTKFACVDG 240 (752)
T ss_pred HHHHHHHcCCCEEEeCcccccCcccccCcceeEeCCCeEEEECCC
Confidence 344444444221224555667999999999999988656788654
No 132
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=96.39 E-value=0.0011 Score=58.04 Aligned_cols=59 Identities=27% Similarity=0.420 Sum_probs=41.2
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhh------h---hhh
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTI------L---NCA 256 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~C------g---~C~ 256 (279)
+.+.+.||.||.|..+||... . ++. . + ....+.|++| | .|+
T Consensus 96 ~vd~d~CIGC~yCi~ACPyga-~---~~~-------------~-~------------~~~~~KCt~C~~ri~~g~~PaCV 145 (203)
T COG0437 96 LVDKDLCIGCGYCIAACPYGA-P---QFN-------------P-D------------KGVVDKCTFCVDRVAVGKLPACV 145 (203)
T ss_pred EecCCcccCchHHHhhCCCCC-c---eeC-------------c-c------------cCcccccCcchhhHhcCCCCccc
Confidence 456789999999999999431 0 100 0 0 0126789999 8 999
Q ss_pred hhCCCCCChHHHHHHHHH
Q 023670 257 RACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 257 ~vCP~gi~~~~~I~~lR~ 274 (279)
++||.++-.-.-|.+++.
T Consensus 146 ~~CP~~A~~fG~~~d~~~ 163 (203)
T COG0437 146 EACPTGALIFGDIDDPKS 163 (203)
T ss_pred ccCCcccccccchhhcch
Confidence 999999876556666654
No 133
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=96.38 E-value=0.0053 Score=65.79 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=26.4
Q ss_pred CccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670 93 SLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (279)
Q Consensus 93 tl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~ 125 (279)
+|.-+..|..|+||.|.|.++|...++|..-..
T Consensus 210 Sle~~M~cG~G~Cg~C~v~~~~~~~~~C~DGPv 242 (1006)
T PRK12775 210 SLNAIMVDGTGMCGSCRVTVGGEVKFACVDGPD 242 (1006)
T ss_pred CChhheeCccceeCCCEeeeCCceEEEeCCCCe
Confidence 455566799999999999999977889975433
No 134
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=96.29 E-value=0.0012 Score=38.08 Aligned_cols=18 Identities=33% Similarity=0.826 Sum_probs=15.8
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||.++
T Consensus 6 ~~~C~~Cg~C~~~Cp~~a 23 (24)
T PF12837_consen 6 PDKCIGCGDCVRVCPEGA 23 (24)
T ss_pred hhhCcChhHHHHhcchhc
Confidence 467999999999999864
No 135
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=96.27 E-value=0.00087 Score=61.01 Aligned_cols=48 Identities=19% Similarity=0.355 Sum_probs=32.9
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
+..+|+.||.|..+|+.... -++ .++. . ....+.|+.||.|..+||.+
T Consensus 67 ~~e~C~~CG~C~~vC~f~Ai---------------~~~-~~~~---------~--~~~~~lC~GCgaC~~~CP~~ 114 (284)
T COG1149 67 DPEKCIRCGKCAEVCRFGAI---------------VVL-PGGK---------P--VLNPDLCEGCGACSIVCPEP 114 (284)
T ss_pred ChhhccccCcHHHhCCCCeE---------------EEc-CCCc---------e--ecCcccccCcccceeeCCCc
Confidence 45679999999999995321 111 1111 0 01358899999999999987
No 136
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=96.16 E-value=0.0017 Score=59.81 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=39.4
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHH
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGK 267 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~ 267 (279)
.-.+|+.||.|+..||+..... + + . ...+...|+.||+|.++||.|+ ...
T Consensus 191 ~e~kc~~c~~cv~~cp~~Ai~~------------~-------~---------~-~~I~~~~ci~c~~c~~ac~~ga-v~~ 240 (354)
T COG2768 191 VEEKCYDCGLCVKICPVGAITL------------T-------K---------V-VKIDYEKCIGCGQCMEACPYGA-VDQ 240 (354)
T ss_pred eeecccccchhhhhCCCcceec------------c-------c---------c-eeechhhccchhhhhhhccCcc-ccc
Confidence 4468999999999999754210 0 0 0 1235677999999999999998 344
Q ss_pred HHHHHHH
Q 023670 268 QIINIKQ 274 (279)
Q Consensus 268 ~I~~lR~ 274 (279)
.|.+.+.
T Consensus 241 ~W~~~~~ 247 (354)
T COG2768 241 NWEEDSP 247 (354)
T ss_pred chhhccH
Confidence 5554443
No 137
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=96.06 E-value=0.0036 Score=33.03 Aligned_cols=15 Identities=40% Similarity=1.132 Sum_probs=13.7
Q ss_pred ccCcccCcccCCCCC
Q 023670 190 YECILCACCSTSCPS 204 (279)
Q Consensus 190 ~~CI~CG~C~~~CP~ 204 (279)
++||.|+.|+.+||.
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 579999999999995
No 138
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=96.06 E-value=0.0024 Score=61.84 Aligned_cols=50 Identities=32% Similarity=0.668 Sum_probs=34.0
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+.+.++|+.|+.|+.+||..... .+... . .+ ....|+.|+.|..+||.+.
T Consensus 6 ~id~~~Ci~C~~C~~~CP~~ai~-----------------~~~~~----~---~i----~~~~C~~C~~C~~~CP~~A 55 (411)
T TIGR03224 6 LIDPEICIRCNTCEETCPIDAIT-----------------HDDRN----Y---VV----KADVCNGCMACVSPCPTGA 55 (411)
T ss_pred eeCcccCcCccchhhhCCcccEe-----------------ccCCc----e---Ee----CcccCcCHHHHHhhcCccc
Confidence 34678899999999999954211 00010 0 01 2456999999999999874
No 139
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=96.06 E-value=0.0027 Score=36.46 Aligned_cols=18 Identities=28% Similarity=0.551 Sum_probs=15.2
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|..+||.++
T Consensus 5 ~~~C~~Cg~C~~~CP~~a 22 (24)
T PF00037_consen 5 PDKCIGCGRCVEACPFDA 22 (24)
T ss_dssp TTTSSS-THHHHHSTTSS
T ss_pred hHHCCCcchhhhhccccc
Confidence 467999999999999986
No 140
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=96.04 E-value=0.0026 Score=52.15 Aligned_cols=52 Identities=25% Similarity=0.510 Sum_probs=33.6
Q ss_pred cccccCcccC-----cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670 187 DGMYECILCA-----CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 261 (279)
Q Consensus 187 ~~~~~CI~CG-----~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~ 261 (279)
.+..+|+.|| .|+.+||..... .+.... . .. ......|+.||.|+.+||.
T Consensus 5 v~~~~C~gC~~~~~~~Cv~~CP~~ai~-----------------~~~~~~----~--~~--~id~~~C~~Cg~Cv~~CP~ 59 (132)
T TIGR02060 5 VYPTKCDGCKAGEKTACVYICPNDLMH-----------------LDTEIM----K--AY--NIEPDMCWECYSCVKACPQ 59 (132)
T ss_pred EccccccCccCCchhcCHhhcCccceE-----------------ecCCCc----e--ee--ecCchhCccHHHHHHhCCc
Confidence 3567899999 999999954211 010000 0 00 0124679999999999998
Q ss_pred CC
Q 023670 262 GL 263 (279)
Q Consensus 262 gi 263 (279)
++
T Consensus 60 ~A 61 (132)
T TIGR02060 60 GA 61 (132)
T ss_pred Cc
Confidence 65
No 141
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0067 Score=57.49 Aligned_cols=79 Identities=20% Similarity=0.378 Sum_probs=57.3
Q ss_pred eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC----Ce-----eecccccccc--CCCCceEEeeCCC-
Q 023670 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----GC-----NGLACLTKIS--PSGSASTITPLPH- 138 (279)
Q Consensus 71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in----G~-----~~lAC~t~v~--~g~~~~~iepl~~- 138 (279)
++++ ..||||-|+.-.. . -....+|-+|-||.|+|.|. |. .|=||...+. +|++.+++|.|++
T Consensus 22 ~v~P-~~TlLd~LR~d~~-l---tGtKEGCAEGDCGACTVlVgrl~~g~~l~yeSVNACirfl~sL~G~hvvTvE~L~~~ 96 (493)
T COG4630 22 DVPP-TTTLLDYLRLDRR-L---TGTKEGCAEGDCGACTVLVGRLVDGGSLRYESVNACIRFLGSLDGTHVVTVEHLRGQ 96 (493)
T ss_pred cCCc-chHHHHHHHHhcc-c---ccccccccCCCcCceEEEEEeecCCCceeeeehhHHHHHHhhcCCceEEEehhhcCC
Confidence 4456 6899999996431 2 33667899999999999874 43 3449999998 7889999999985
Q ss_pred ---Ccchhhhhhccchhhh
Q 023670 139 ---MFVIKDLVVDMTNFYN 154 (279)
Q Consensus 139 ---~~vikDLvvD~~~~~~ 154 (279)
+.-++.-+||.+.-.+
T Consensus 97 ~g~LHpVQqamvd~hGSQC 115 (493)
T COG4630 97 DGTLHPVQQAMVDFHGSQC 115 (493)
T ss_pred CCCcCHHHHHHHhccCCcc
Confidence 2224555677766444
No 142
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=95.92 E-value=0.0013 Score=37.85 Aligned_cols=18 Identities=33% Similarity=0.755 Sum_probs=15.8
Q ss_pred cccccCcccCcccCCCCC
Q 023670 187 DGMYECILCACCSTSCPS 204 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~ 204 (279)
.+.++|+.||.|+.+||.
T Consensus 4 id~~~C~~Cg~C~~~Cp~ 21 (24)
T PF12837_consen 4 IDPDKCIGCGDCVRVCPE 21 (24)
T ss_pred EChhhCcChhHHHHhcch
Confidence 356789999999999995
No 143
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=95.67 E-value=0.0058 Score=54.45 Aligned_cols=47 Identities=19% Similarity=0.474 Sum_probs=32.5
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh----------hhh
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL----------NCA 256 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg----------~C~ 256 (279)
.+..+|+.||.|..+||.... + + +.. ......|+.|+ .|+
T Consensus 122 id~~~C~~C~~C~~aCP~~A~----~-----------~--~~~-------------~~~~~kC~~C~~~~~~~g~~P~Cv 171 (225)
T TIGR03149 122 VHKDLCVGCQYCIAACPYRVR----F-----------I--HPV-------------TKSADKCNFCRDTNLAEGKLPACV 171 (225)
T ss_pred echhhCCcchHHHHhCCCCCc----E-----------e--cCC-------------CCccccCCCCCcchhhCCCCCccc
Confidence 345789999999999995320 0 0 000 01246899998 799
Q ss_pred hhCCCCC
Q 023670 257 RACPKGL 263 (279)
Q Consensus 257 ~vCP~gi 263 (279)
++||+++
T Consensus 172 ~~Cp~~A 178 (225)
T TIGR03149 172 ESCPTKA 178 (225)
T ss_pred ccCccCC
Confidence 9999876
No 144
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=95.58 E-value=0.0052 Score=59.86 Aligned_cols=40 Identities=30% Similarity=0.633 Sum_probs=29.5
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 261 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~ 261 (279)
..+|+.|+.|+.+||... . .++. ....|+.||.|.++||.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi-~-------------------~~~~-------------~~~~Ci~Cg~CidaCp~ 269 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGI-D-------------------IRDG-------------LQLECINCGLCIDACDD 269 (434)
T ss_pred CCCCCChhhhHHhCCCCC-E-------------------eCCC-------------CchhChhhhHHHHhCCC
Confidence 468999999999999531 0 0110 12469999999999996
No 145
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=95.56 E-value=0.0021 Score=56.89 Aligned_cols=56 Identities=30% Similarity=0.637 Sum_probs=32.8
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh--hhhhhCCCCC
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL--NCARACPKGL 263 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg--~C~~vCP~gi 263 (279)
+.+||.||.|+.+||...... ..+ .+...... . .+. .....|..|+ .|+.+||+++
T Consensus 52 ~~~Ci~Cg~Cv~aCP~~ai~~------------~~~-~~~~~~g~-p---~~~--~~~~~C~~C~d~~Cv~~CP~~A 109 (213)
T TIGR00397 52 LAACVRCGLCVEACPYDILSL------------ASW-SDPAPLGT-P---FFT--PREVPCRMCKDIPCARACPTGA 109 (213)
T ss_pred cccccchhHHHHhCCcccccc------------ccc-ccccccCC-c---ccc--ccCCcCCCCCCchHHhHcCHhh
Confidence 479999999999999643210 000 00000000 0 010 1235699999 6999999986
No 146
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=95.56 E-value=0.005 Score=32.48 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=13.7
Q ss_pred cCchhhhhhhhhCCCC
Q 023670 247 YRCHTILNCARACPKG 262 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~g 262 (279)
..|+.|+.|+.+||.+
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 4699999999999974
No 147
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=95.56 E-value=0.0026 Score=56.92 Aligned_cols=48 Identities=25% Similarity=0.564 Sum_probs=32.8
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+..+|+.|+.|..+||..... . .++. . ......|..||.|..+||.+.
T Consensus 146 d~~~C~~C~~C~~~CP~~ai~---------------~-~~~~----------~--~i~~~~C~~Cg~C~~~CP~~A 193 (234)
T TIGR02700 146 DRKRCKGCGICVDACPRSAID---------------M-VDGK----------A--FIRLLKCVGCGKCKEACPYNA 193 (234)
T ss_pred ChhHCcCcchHHHhCCcccEE---------------e-cCCc----------e--EEchhhCCccchHHhhCCCCc
Confidence 457899999999999953210 0 0000 0 113457999999999999875
No 148
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=95.35 E-value=0.003 Score=47.99 Aligned_cols=51 Identities=24% Similarity=0.400 Sum_probs=34.7
Q ss_pred hhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670 185 KLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 261 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~ 261 (279)
...+..+||.|+.|.--||...... .+..... ......|-.||-|..+||+
T Consensus 30 Pv~d~~kCi~C~~C~~yCPe~~i~~-------------------~~~~~~~-------~idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 30 PVVDEDKCINCKLCWLYCPEPAILE-------------------EEGGYKV-------RIDYDYCKGCGICANVCPV 80 (91)
T ss_pred eEEcccccccCceeEEECCchheee-------------------ccCCccc-------eeEcccccCceechhhCCh
Confidence 3456789999999999999653210 1100000 0235789999999999998
No 149
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=95.18 E-value=0.0042 Score=35.67 Aligned_cols=18 Identities=33% Similarity=0.778 Sum_probs=14.8
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
+.++|+.||.|+.+||..
T Consensus 4 d~~~C~~Cg~C~~~CP~~ 21 (24)
T PF00037_consen 4 DPDKCIGCGRCVEACPFD 21 (24)
T ss_dssp ETTTSSS-THHHHHSTTS
T ss_pred chHHCCCcchhhhhcccc
Confidence 567899999999999964
No 150
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=95.17 E-value=0.012 Score=59.60 Aligned_cols=46 Identities=28% Similarity=0.511 Sum_probs=32.0
Q ss_pred cccccCcccCcccC--CCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCST--SCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~--~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+..+|+.||.|.. .||.... .+++ . .+ .. .|+.||.|+.+||.++
T Consensus 547 id~~~C~~C~~C~~~~~CP~~~~------------------~~~~-------~-~i----~~-~C~~Cg~C~~~CP~~A 594 (595)
T TIGR03336 547 VDQDKCIGCKKCIKELGCPAIEP------------------EDKE-------A-VI----DP-LCTGCGVCAQICPFDA 594 (595)
T ss_pred EcCCcCCCccccccccCCCCccc------------------cCCc-------c-ee----CC-CCcCHHHHHhhCcccc
Confidence 45679999999999 9994310 0000 0 11 12 5999999999999874
No 151
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=95.16 E-value=0.013 Score=54.11 Aligned_cols=68 Identities=15% Similarity=0.257 Sum_probs=36.2
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCch-hhhhhhhhCCCCCC
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCH-TILNCARACPKGLN 264 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~-~Cg~C~~vCP~gi~ 264 (279)
...|..|+.|..+||+.....+..+.+..-+. +.. .+.+....++ +. . ....|+ .|+.|..+||.+..
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~s-y~t-i~~~~~~~~~-~~---~--~~~~~~~gCd~Cq~vCP~n~~ 226 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVEPEFVDAPRCIS-YLT-IEKDAALPKE-FA---S--NCGGRSYGCDICQEVCPWNKK 226 (282)
T ss_pred CCCCccHHHHHHhcCcccccCCCccCHHHHHH-Hhc-ccCCCcCCHH-HH---H--HhcCcccCCCCccccCCCCCC
Confidence 35799999999999986543222233322111 111 1111111111 11 1 234454 59999999998764
No 152
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=95.07 E-value=0.0086 Score=57.38 Aligned_cols=47 Identities=26% Similarity=0.509 Sum_probs=32.1
Q ss_pred hcccccCcccCccc--CCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCS--TSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~--~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+..+|+.|+.|. .+||..... .+. .+ ....|..||.|+.+||.++
T Consensus 298 ~id~dkCi~Cg~C~~~~aCPt~AI~--------------------~~~-------~I----d~~~Ci~CGaCV~aCP~~A 346 (391)
T TIGR03287 298 KYNPERCENCDPCLVEEACPVPAIK--------------------KDG-------TL----NTEDCFGCGYCAEICPGGA 346 (391)
T ss_pred EEchhhCcCCCCCcCCcCCCHhhEe--------------------ccc-------ee----ChHhCcChHHHHhhCCccc
Confidence 34567899999995 899953210 000 01 2356999999999999754
No 153
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=95.02 E-value=0.011 Score=54.41 Aligned_cols=31 Identities=16% Similarity=0.447 Sum_probs=20.6
Q ss_pred ccCchhhh---------hhhhhCCCCC----ChHHHHHHHHHHH
Q 023670 246 LYRCHTIL---------NCARACPKGL----NPGKQIINIKQLQ 276 (279)
Q Consensus 246 ~~~C~~Cg---------~C~~vCP~gi----~~~~~I~~lR~~~ 276 (279)
...|+.|. .|+.+||+++ +..+++...++++
T Consensus 150 ~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~~~~~~~a~~r~ 193 (283)
T TIGR01582 150 PYKCTLCIDRVSVGQEPACVKTCPTNAISFGFKEDMKERAEKRV 193 (283)
T ss_pred hhhhcccccccccCCCChHhCcccHhhEEECCHHHHHHHHHHHH
Confidence 35688884 8999999886 3355555555443
No 154
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=94.90 E-value=0.047 Score=58.21 Aligned_cols=69 Identities=22% Similarity=0.263 Sum_probs=51.4
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECC-----e----eecccccccc--CCCCceEEe
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDG-----C----NGLACLTKIS--PSGSASTIT 134 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG-----~----~~lAC~t~v~--~g~~~~~ie 134 (279)
+.|+++.-++++|++.-||+.- +--....+|.+|-||+|.|++-. + .+=||.|++- .|...+++|
T Consensus 10 ~~~~~~~vdP~~TL~~fLR~k~----~ltgtKlgC~EGGCGaCtv~ls~~dp~~~~~~~avNsCLt~l~s~~g~~VtT~E 85 (1257)
T KOG0430|consen 10 KRVEVELLPPDLTLNTFLREKL----GLTGTKLGCGEGGCGACTVVLSKYDPELKVRHWAVNSCLTLLNSVHGLEVTTSE 85 (1257)
T ss_pred EEeeEecCCcchhHHHHHHHhc----CCcceeeccCCCCccceEEEEeccCCCceeEEeehhhhhhhcccccceEEEeee
Confidence 4555554333899999999853 12335568999999999999876 2 2349999998 567788899
Q ss_pred eCCC
Q 023670 135 PLPH 138 (279)
Q Consensus 135 pl~~ 138 (279)
.|.+
T Consensus 86 GlGn 89 (1257)
T KOG0430|consen 86 GLGN 89 (1257)
T ss_pred cccc
Confidence 9886
No 155
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=94.89 E-value=0.0089 Score=58.16 Aligned_cols=18 Identities=39% Similarity=0.683 Sum_probs=11.1
Q ss_pred ccccCcccC--cccCCCCCc
Q 023670 188 GMYECILCA--CCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG--~C~~~CP~~ 205 (279)
....|++|+ .|+.+||..
T Consensus 179 ~p~~C~HC~nP~CV~ACPtG 198 (492)
T TIGR01660 179 LPRLCEHCLNPACVASCPSG 198 (492)
T ss_pred CCCcCcCCCcccchhhCccC
Confidence 345666666 666666643
No 156
>PRK10194 ferredoxin-type protein; Provisional
Probab=94.84 E-value=0.0056 Score=51.64 Aligned_cols=19 Identities=32% Similarity=0.891 Sum_probs=16.0
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+...|+.|+.|..+||+..
T Consensus 64 ~~~~C~~C~~C~~~CP~~a 82 (163)
T PRK10194 64 KNNECSFCYACAQACPESL 82 (163)
T ss_pred cCCCCCCchhhHhhCcchh
Confidence 3567999999999999853
No 157
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=94.84 E-value=0.0076 Score=56.17 Aligned_cols=18 Identities=22% Similarity=0.672 Sum_probs=15.8
Q ss_pred ccCchhh---------hhhhhhCCCCC
Q 023670 246 LYRCHTI---------LNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~C---------g~C~~vCP~gi 263 (279)
...|+.| ..|+.+||.++
T Consensus 188 ~eKC~~C~~Rie~G~~PaCv~aCP~~A 214 (321)
T TIGR03478 188 SEKCIGCYPRIEKGIAPACVKQCPGRI 214 (321)
T ss_pred hhhCCCchhhhccCCCCHHHhhcCccc
Confidence 4679999 79999999877
No 158
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=94.66 E-value=0.0071 Score=53.47 Aligned_cols=17 Identities=18% Similarity=0.489 Sum_probs=15.5
Q ss_pred ccCchhhhhhhhhCCCC
Q 023670 246 LYRCHTILNCARACPKG 262 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~g 262 (279)
...|+.||.|+.+||++
T Consensus 174 ~~~C~gCG~C~~~CP~~ 190 (213)
T TIGR00397 174 SAKCTGCGTCEKHCVLS 190 (213)
T ss_pred cccCCCcchhhHhCCCC
Confidence 46899999999999987
No 159
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.64 E-value=0.007 Score=30.93 Aligned_cols=13 Identities=38% Similarity=1.255 Sum_probs=12.2
Q ss_pred CcccCcccCCCCC
Q 023670 192 CILCACCSTSCPS 204 (279)
Q Consensus 192 CI~CG~C~~~CP~ 204 (279)
|+.|+.|+.+||.
T Consensus 1 C~~C~~C~~~Cp~ 13 (15)
T PF12798_consen 1 CTGCGACVEVCPT 13 (15)
T ss_pred CCCchHHHHHhcC
Confidence 8899999999995
No 160
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=94.64 E-value=0.0038 Score=53.55 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=16.0
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
.+..+|+.||.|..+||..
T Consensus 84 i~~~~C~~C~~C~~~CP~~ 102 (181)
T PRK10330 84 VMQERCIGCKTCVVACPYG 102 (181)
T ss_pred eChhhCCCcchhhhhCCcc
Confidence 3567899999999999954
No 161
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=94.61 E-value=0.012 Score=54.79 Aligned_cols=54 Identities=24% Similarity=0.399 Sum_probs=35.6
Q ss_pred hhcccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 185 KLDGMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 185 ~~~~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
.++....|+.|+ .|+.+||+..... +.+.. . + ......|+.|+.|+.+||.+
T Consensus 124 ~~y~p~~C~hC~nP~Cv~aCPtgAI~k-------------------~eedG--i---V--~ID~ekCiGCg~Cv~ACPyg 177 (321)
T TIGR03478 124 YFYLPRICNHCTNPACLAACPTGAIYK-------------------REEDG--I---V--LVDQERCKGYRYCVEACPYK 177 (321)
T ss_pred EEEecccCCCCCCccchhhCCcCcEEE-------------------ecCCC--e---E--EECHHHCcchHHHHHhCCCC
Confidence 345678999999 8999999643110 00000 0 0 01245799999999999988
Q ss_pred CC
Q 023670 263 LN 264 (279)
Q Consensus 263 i~ 264 (279)
+-
T Consensus 178 Ai 179 (321)
T TIGR03478 178 KV 179 (321)
T ss_pred Cc
Confidence 63
No 162
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=94.49 E-value=0.016 Score=51.52 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=34.2
Q ss_pred cccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 187 DGMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 187 ~~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
+....|++|+. |+.+||...... +..+. . + ......|+.||.|..+||.++.
T Consensus 89 ~~~~~C~~C~~~~Cv~~CP~gAi~~-----------------~~~~g----~---v--~id~~~C~~C~~C~~aCP~~A~ 142 (225)
T TIGR03149 89 FFRKSCQHCDNAPCVAVCPTGASFK-----------------DEETG----I---V--DVHKDLCVGCQYCIAACPYRVR 142 (225)
T ss_pred ECchhccCCcCcChHhhCCCCcEEE-----------------eCCCC----e---E--EechhhCCcchHHHHhCCCCCc
Confidence 34578999996 999999643210 00000 0 0 1124579999999999999984
No 163
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=94.46 E-value=0.009 Score=53.92 Aligned_cols=47 Identities=21% Similarity=0.481 Sum_probs=32.7
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhhh
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCAR 257 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~~ 257 (279)
.+..+|+.|+.|+.+||.... .+ ++. ......|+.|+ .|+.
T Consensus 127 id~~~CigC~~Cv~aCP~~Ai---------------~~--~~~-------------~~~~~KC~~C~~r~~~G~~PaCv~ 176 (244)
T PRK14993 127 VDNKRCVGCAYCVQACPYDAR---------------FI--NHE-------------TQTADKCTFCVHRLEAGLLPACVE 176 (244)
T ss_pred EcHHHCCCHHHHHHhcCCCCC---------------EE--eCC-------------CCCcccCcCCcchhhCCCCcccch
Confidence 456789999999999995321 00 000 11346799998 8999
Q ss_pred hCCCCC
Q 023670 258 ACPKGL 263 (279)
Q Consensus 258 vCP~gi 263 (279)
+||+++
T Consensus 177 ~CP~~A 182 (244)
T PRK14993 177 SCVGGA 182 (244)
T ss_pred hcccCC
Confidence 999887
No 164
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=94.44 E-value=0.011 Score=53.77 Aligned_cols=17 Identities=35% Similarity=0.993 Sum_probs=15.0
Q ss_pred cccCcccCcccCCCCCc
Q 023670 189 MYECILCACCSTSCPSY 205 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~ 205 (279)
..+||.||.|+.+||..
T Consensus 58 ~~~Ci~Cg~Cv~aCP~~ 74 (254)
T PRK09476 58 LSACIRCGLCVQACPYD 74 (254)
T ss_pred hhhCcCchHHHHhCCcc
Confidence 37899999999999954
No 165
>PRK13984 putative oxidoreductase; Provisional
Probab=94.42 E-value=0.011 Score=59.78 Aligned_cols=61 Identities=26% Similarity=0.449 Sum_probs=34.9
Q ss_pred hcccccCcccCcccCCCCCcccCC-CcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTS-EAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~-~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+.+..+||.||.|+.+||.....- +.+..+ +. .+... .. .......|..|+.|..+||.+.
T Consensus 41 ~~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~--------~~-~g~~~---~~-----~~i~~~~c~~c~~c~~~Cp~~A 102 (604)
T PRK13984 41 INDWEKCIGCGTCSKICPTDAITMVEVPDLP--------QE-YGKKP---QR-----PVIDYGRCSFCALCVDICTTGS 102 (604)
T ss_pred ccChhhCcCccchhhhCCccceEeecccccc--------cc-ccccc---cc-----cccCcccCcCcchHHhhCCcCc
Confidence 346789999999999999542110 000000 00 00000 00 0113467999999999999863
No 166
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.39 E-value=0.012 Score=62.84 Aligned_cols=57 Identities=21% Similarity=0.497 Sum_probs=35.4
Q ss_pred cccccCccc----CcccCCCCCcccCCCcccCHHHHHHHHHHhhcC-cchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670 187 DGMYECILC----ACCSTSCPSYWWTSEAYLGPAALLHANRWISDS-RDEYTKERLEAIDDEFKLYRCHTILNCARACPK 261 (279)
Q Consensus 187 ~~~~~CI~C----G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~-r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~ 261 (279)
.+..+|..| |.|+.+||... |. . ....+ +... + .+. ....|+.||+|..+||.
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A-~~----------~---i~~~g~~~~~--~---~~~---~~~~C~~CG~C~~~CP~ 940 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRA-NV----------S---IAVPGFQNRF--Q---IVH---LDAMCNECGNCAQFCPW 940 (1019)
T ss_pred ccccccCCcccccchhhhhCCccc-cc----------c---cccCCcccCC--c---eEE---cCccCccccchhhhCCC
Confidence 356799999 99999999643 10 0 00000 0000 0 011 13789999999999998
Q ss_pred CCCh
Q 023670 262 GLNP 265 (279)
Q Consensus 262 gi~~ 265 (279)
+..|
T Consensus 941 ~~~p 944 (1019)
T PRK09853 941 NGKP 944 (1019)
T ss_pred CCCc
Confidence 7754
No 167
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=94.35 E-value=0.015 Score=58.38 Aligned_cols=18 Identities=33% Similarity=0.733 Sum_probs=16.0
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|..+||.++
T Consensus 540 ~~~C~~Cg~C~~~CP~~A 557 (564)
T PRK12771 540 YDKCTGCHICADVCPCGA 557 (564)
T ss_pred cccCcChhHHHhhcCcCc
Confidence 567999999999999865
No 168
>PRK13795 hypothetical protein; Provisional
Probab=94.30 E-value=0.0087 Score=61.11 Aligned_cols=51 Identities=22% Similarity=0.507 Sum_probs=33.2
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.....|+.||.|..+||..... . .+... .+ ......|+.||.|..+||.+.
T Consensus 578 ~~~~~C~~Cg~C~~~CP~~ai~---------------~-~~~~~--------~~--~id~~~C~~Cg~C~~aCP~~a 628 (636)
T PRK13795 578 RRAAECVGCGVCVGACPTGAIR---------------I-EEGKR--------KI--SVDEEKCIHCGKCTEVCPVVK 628 (636)
T ss_pred EccccCCCHhHHHHhCCcccEE---------------e-ecCCc--------eE--EechhhcCChhHHHhhcCCCe
Confidence 4567899999999999954211 0 00000 01 012357999999999999865
No 169
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=94.29 E-value=0.021 Score=51.12 Aligned_cols=44 Identities=27% Similarity=0.468 Sum_probs=29.2
Q ss_pred HHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccc
Q 023670 79 VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLT 122 (279)
Q Consensus 79 vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t 122 (279)
+.++|++.|....=++.-...|..|+||+|+|.++|..+++|..
T Consensus 196 v~~~l~~~Gv~~~~~~e~~m~cg~G~C~~C~~~~~~~~~~~C~~ 239 (250)
T PRK00054 196 VVEILKEKKVPAYVSLERRMKCGIGACGACVCDTETGGKRVCKD 239 (250)
T ss_pred HHHHHHHcCCcEEEEEcccccCcCcccCcCCcccCCCCEEEeCc
Confidence 44555555421111233344699999999999999988899964
No 170
>PRK07118 ferredoxin; Validated
Probab=94.20 E-value=0.017 Score=53.21 Aligned_cols=48 Identities=23% Similarity=0.507 Sum_probs=33.4
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
...||.|+.|+.+||..... + .+.. .......|+.||.|..+||+++-
T Consensus 212 ~~~Ci~Cg~Cv~~CP~~AI~---------------~-~~~~------------~vId~~~C~~Cg~C~~~CP~~AI 259 (280)
T PRK07118 212 EVGCIGCGKCVKACPAGAIT---------------M-ENNL------------AVIDQEKCTSCGKCVEKCPTKAI 259 (280)
T ss_pred ccccccchHHHhhCCcCcEE---------------E-eCCc------------EEEcCCcCCCHHHHHHhCCcccc
Confidence 46799999999999954211 0 0000 01235789999999999999864
No 171
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.18 E-value=0.0057 Score=62.49 Aligned_cols=21 Identities=19% Similarity=0.637 Sum_probs=17.9
Q ss_pred hcccccCcccCcccCCCCCcc
Q 023670 186 LDGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~ 206 (279)
+.+.++||.|+.|..+|+...
T Consensus 6 ~~d~~~C~gC~~C~~aC~~~~ 26 (654)
T PRK12769 6 MANSQQCLGCHACEIACVMAH 26 (654)
T ss_pred EEChHhCcChhHHHHHhhhhh
Confidence 457789999999999999753
No 172
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=94.15 E-value=0.018 Score=48.35 Aligned_cols=19 Identities=26% Similarity=0.651 Sum_probs=15.9
Q ss_pred ccCchhhh---------hhhhhCCCCCC
Q 023670 246 LYRCHTIL---------NCARACPKGLN 264 (279)
Q Consensus 246 ~~~C~~Cg---------~C~~vCP~gi~ 264 (279)
...|+.|+ .|+.+||.++=
T Consensus 121 ~~kC~~C~~r~~~g~~p~Cv~~Cp~~Ai 148 (161)
T TIGR02951 121 MGKCDGCYDRVEKGLRPACVDACPMRAL 148 (161)
T ss_pred cccCCCCHHHHHCCCCCcchhhccccce
Confidence 45799998 89999998764
No 173
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=94.13 E-value=0.0045 Score=53.09 Aligned_cols=20 Identities=25% Similarity=0.705 Sum_probs=17.2
Q ss_pred hcccccCcccCcccCCCCCc
Q 023670 186 LDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~ 205 (279)
+.+.++|+.|+.|+.+||..
T Consensus 6 ~~d~~~C~gC~~C~~aC~~~ 25 (181)
T PRK10330 6 IADASKCIGCRTCEVACVVS 25 (181)
T ss_pred EeCcccCcCccHHHHHHHHH
Confidence 45678999999999999964
No 174
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=94.13 E-value=0.0081 Score=46.70 Aligned_cols=21 Identities=29% Similarity=0.637 Sum_probs=15.6
Q ss_pred hhcccccCcccCcccCCCCCc
Q 023670 185 KLDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~ 205 (279)
.+.+..+||.||.|..+||..
T Consensus 35 V~id~~~CigC~~C~~aCP~~ 55 (98)
T PF13247_consen 35 VVIDEDKCIGCGYCVEACPYG 55 (98)
T ss_dssp EEE-TTTCCTHHHHHHH-TTS
T ss_pred EEechhhccCchhhhhhhccC
Confidence 345678999999999999954
No 175
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=94.12 E-value=0.014 Score=53.77 Aligned_cols=52 Identities=19% Similarity=0.418 Sum_probs=33.7
Q ss_pred cccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 187 DGMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 187 ~~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
+....|++|+. |+.+||..... ....++. + .+....|+.|+.|+.+||.++.
T Consensus 88 ~~~~~C~hC~~p~Cv~aCP~~gA~--------------~~~~~G~----------V--~id~dkCigC~~Cv~aCP~~a~ 141 (283)
T TIGR01582 88 IRKDGCMHCREPGCLKACPAPGAI--------------IQYQNGI----------V--DFDHSKCIGCGYCIVGCPFNIP 141 (283)
T ss_pred ECCccCCCCCCccccCCCCcCCeE--------------EEcCCCc----------E--EEeHHHCCcchHHHhhCCCCCc
Confidence 34567999998 99999962110 0000000 0 1123569999999999999974
No 176
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=94.08 E-value=0.012 Score=52.51 Aligned_cols=54 Identities=22% Similarity=0.506 Sum_probs=35.7
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCCh
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNP 265 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~ 265 (279)
..+..+|+.|+.|..+||.... ++ + .+ . . ......|..|+.|..+||.+.-+
T Consensus 170 ~id~~~C~~C~~C~~aCP~~ai---------------~~--~-~~-----~---~--~i~~~~C~~C~~C~~~CP~~~~~ 221 (228)
T TIGR03294 170 VVNQGLCMGCGTCAAACPTRAI---------------EM--E-DG-----R---P--NVNRDRCIKCGACYVQCPRAFWP 221 (228)
T ss_pred EEChhhCcChhHHHHhCCHhhE---------------EE--e-CC-----c---E--EEChhhccCHHHHHHHcCCCCcc
Confidence 3456789999999999994321 10 0 00 0 0 01235699999999999997755
Q ss_pred HH
Q 023670 266 GK 267 (279)
Q Consensus 266 ~~ 267 (279)
.+
T Consensus 222 ~~ 223 (228)
T TIGR03294 222 EY 223 (228)
T ss_pred hh
Confidence 43
No 177
>KOG3309 consensus Ferredoxin [Energy production and conversion]
Probab=94.03 E-value=0.22 Score=41.60 Aligned_cols=52 Identities=27% Similarity=0.506 Sum_probs=35.7
Q ss_pred EEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC
Q 023670 50 FQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG 114 (279)
Q Consensus 50 ~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG 114 (279)
|+|+--||+. ++-.+.... |+||||++.+++.+.++ .|. .-.|-.|.|-|+-
T Consensus 44 i~Itfv~~dG------~~~~i~g~v-GdtlLd~ah~n~idleG------ACEgslACSTCHViv~~ 96 (159)
T KOG3309|consen 44 IKITFVDPDG------EEIKIKGKV-GDTLLDAAHENNLDLEG------ACEGSLACSTCHVIVDE 96 (159)
T ss_pred EEEEEECCCC------CEEEeeeec-chHHHHHHHHcCCCccc------cccccccccceEEEEcH
Confidence 7777778765 333455555 99999999999865443 453 3467778877764
No 178
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=94.02 E-value=0.0021 Score=54.07 Aligned_cols=21 Identities=19% Similarity=0.458 Sum_probs=17.8
Q ss_pred hhcccccCcccCcccCCCCCc
Q 023670 185 KLDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~ 205 (279)
.+.+.++||.|+.|+.+|+..
T Consensus 4 ~~~d~~~C~gC~~C~~aC~~~ 24 (161)
T TIGR02951 4 FYVDQTRCSGCKTCQIACKDK 24 (161)
T ss_pred EEEEcccCcCchHHHHHHHHH
Confidence 345788999999999999964
No 179
>PRK07118 ferredoxin; Validated
Probab=94.01 E-value=0.011 Score=54.34 Aligned_cols=46 Identities=22% Similarity=0.543 Sum_probs=31.7
Q ss_pred ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+.||.||.|..+||..... . .++.. ......|+.||.|+.+||.++
T Consensus 139 ~~CigCg~C~~aCp~~AI~---------------~-~~g~~------------~id~~~C~~Cg~Cv~aCP~~a 184 (280)
T PRK07118 139 YGCLGLGSCVAACPFDAIH---------------I-ENGLP------------VVDEDKCTGCGACVKACPRNV 184 (280)
T ss_pred CCCcChhHHHHhCCccCeE---------------c-cCCeE------------EEChhhCcChhHHHHhcCccc
Confidence 4799999999999954211 0 01110 112467999999999999865
No 180
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=94.00 E-value=0.02 Score=32.21 Aligned_cols=17 Identities=41% Similarity=0.749 Sum_probs=15.0
Q ss_pred CccCchhhhhhhhhCCC
Q 023670 245 KLYRCHTILNCARACPK 261 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~ 261 (279)
...+|+.|+.|+.+||.
T Consensus 6 D~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 6 DLERCIGCGACEVACPV 22 (22)
T ss_pred ccccccCchhHHHhhCc
Confidence 46789999999999984
No 181
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=93.97 E-value=0.019 Score=56.34 Aligned_cols=63 Identities=22% Similarity=0.412 Sum_probs=35.6
Q ss_pred ccCcccCcccCCCCCcccCCCcc-cCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 190 YECILCACCSTSCPSYWWTSEAY-LGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 190 ~~CI~CG~C~~~CP~~~~~~~~~-~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
++|+.||.|+.+||...- ++| .|- ...++ +..+-. +.+. ..-......|+.||.|..+||.++
T Consensus 224 d~CtgCg~C~~vCPve~~--nefn~Gl-~~~kA---iy~p~~----qaVp-~~~~Id~~~c~~c~~C~~ac~~~a 287 (622)
T COG1148 224 DKCTGCGACSEVCPVEVP--NEFNEGL-GKRKA---IYIPFP----QAVP-LNYNIDPKHCIECGLCEKACPNEA 287 (622)
T ss_pred ccccccccccccCCcccC--ccccccc-cccee---eeccch----hhcc-cccccChhhhccchhhhhcCCccc
Confidence 799999999999998642 222 110 00111 000110 0000 111235689999999999999543
No 182
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=93.94 E-value=0.017 Score=54.40 Aligned_cols=52 Identities=23% Similarity=0.506 Sum_probs=34.3
Q ss_pred cccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 187 DGMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 187 ~~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
+....|++|+ .|+.+||...... +.... . + ......|+.|+.|..+||.++.
T Consensus 107 ~~~~~C~hC~~p~Cv~aCP~gAi~k-----------------~~~~g----~---V--~id~dkCigCg~Cv~aCP~gai 160 (328)
T PRK10882 107 YIKKQCMHCVDPNCVSVCPVSALTK-----------------DPKTG----I---V--HYDKDVCTGCRYCMVACPFNVP 160 (328)
T ss_pred cccccCCCcCchhhHhhCCCCCEEe-----------------cccCC----c---c--cCCHHHcCcccHHHHhCCccce
Confidence 3456899998 9999999643210 00000 0 0 0124579999999999998885
No 183
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=93.81 E-value=0.0098 Score=54.00 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=15.3
Q ss_pred ccCchhhhhhhhhCCCC
Q 023670 246 LYRCHTILNCARACPKG 262 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~g 262 (279)
...|+.||.|+.+||.+
T Consensus 183 ~d~C~gCG~C~~aCP~~ 199 (254)
T PRK09476 183 SDACTGCGKCEKACVLE 199 (254)
T ss_pred HHHCcCcChhhHhcCCC
Confidence 35799999999999997
No 184
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=93.63 E-value=0.13 Score=55.20 Aligned_cols=66 Identities=12% Similarity=0.039 Sum_probs=46.5
Q ss_pred EeccCCCchHHHHHHHcccCCC-CCccc-cC-C--CCCCccCeeEEEECCe-----eeccccccccCCCCceEEeeCCCC
Q 023670 70 INLKECGPMVLDALIKIKSEID-PSLTF-RR-S--CREGICGSCAMNIDGC-----NGLACLTKISPSGSASTITPLPHM 139 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~d-ptl~~-~~-~--c~~g~CG~C~v~inG~-----~~lAC~t~v~~g~~~~~iepl~~~ 139 (279)
++..+ |.||.-||..+|...- -++-+ ++ + |..|.|--|.|+|||. ++.||.|++.+| ++|+....+
T Consensus 22 ~~~~~-g~t~a~al~a~g~~~~~~s~~~~~prg~~c~~~~~~~c~v~i~~~~~~~~~~~ac~~~~~~g---m~~~~~~~~ 97 (985)
T TIGR01372 22 YSGFA-GDTLASALLANGVHLVGRSFKYHRPRGILTAGVEEPNALVTVGSGAQREPNTRATTQELYDG---LVATSQNRW 97 (985)
T ss_pred eecCC-CCHHHHHHHhCCCeeecccCCCCCCCcccccCccCCCeEEEECCCcCCCCCccceeEEcccC---CEEecccCC
Confidence 45557 9999999999884321 12212 11 2 8878899999999973 578999999987 555554444
No 185
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.58 E-value=0.022 Score=60.87 Aligned_cols=17 Identities=35% Similarity=0.647 Sum_probs=15.2
Q ss_pred CchhhhhhhhhCCCCCC
Q 023670 248 RCHTILNCARACPKGLN 264 (279)
Q Consensus 248 ~C~~Cg~C~~vCP~gi~ 264 (279)
.|+.||.|+.+||.+.-
T Consensus 922 ~C~~CG~C~~vCP~~a~ 938 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGA 938 (1012)
T ss_pred cccccchHHHhCCCCcc
Confidence 59999999999999764
No 186
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=93.25 E-value=0.028 Score=52.58 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=20.9
Q ss_pred hhhhhhhhCCCCCChHHHHHHHHHHHH
Q 023670 251 TILNCARACPKGLNPGKQIINIKQLQL 277 (279)
Q Consensus 251 ~Cg~C~~vCP~gi~~~~~I~~lR~~~~ 277 (279)
.||.|..+||.+.+....|+++=+.++
T Consensus 268 ~C~~C~~~CPf~~~~~s~iH~vvk~tv 294 (314)
T TIGR02486 268 GCGVCQAVCPFNKKPNSWIHDVVRSTV 294 (314)
T ss_pred CCCCCeeECCCCCCCcchHHHHHHHHh
Confidence 599999999999777777776655443
No 187
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=93.17 E-value=0.026 Score=55.03 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=33.4
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhhh
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCAR 257 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~~ 257 (279)
.+..+|+.|+.|+.+||.... .+ +.. ......|..|. .|++
T Consensus 211 ID~dkCiGCg~CV~ACPygAI---------------~~--n~~-------------~g~~~KCd~C~~Rie~G~pPaCVe 260 (492)
T TIGR01660 211 IDQDKCRGWRMCISGCPYKKI---------------YF--NWK-------------TGKSEKCIFCYPRIEAGQPTVCSE 260 (492)
T ss_pred EehhhccChHHHHHhCCCCCc---------------Ee--cCC-------------CCccccCCCChhHHhCCCCCcchh
Confidence 456899999999999995321 00 000 01246788885 6999
Q ss_pred hCCCCCC
Q 023670 258 ACPKGLN 264 (279)
Q Consensus 258 vCP~gi~ 264 (279)
+||.++-
T Consensus 261 aCP~~Ar 267 (492)
T TIGR01660 261 TCVGRIR 267 (492)
T ss_pred hcChhhh
Confidence 9999983
No 188
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=93.06 E-value=0.043 Score=37.24 Aligned_cols=17 Identities=35% Similarity=0.845 Sum_probs=12.7
Q ss_pred CchhhhhhhhhCCCCCC
Q 023670 248 RCHTILNCARACPKGLN 264 (279)
Q Consensus 248 ~C~~Cg~C~~vCP~gi~ 264 (279)
+|+.||.|+.+||.++-
T Consensus 1 kCi~Cg~C~~~CP~~~~ 17 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVI 17 (55)
T ss_dssp C--TTTHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCe
Confidence 59999999999999874
No 189
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=92.96 E-value=0.037 Score=47.58 Aligned_cols=51 Identities=24% Similarity=0.460 Sum_probs=33.9
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+.+-+.||.|-.|..+||+-.. +-+ .+ .+..+ ....|+.|+.|+..||++.
T Consensus 111 ~i~e~~ciGCtkCiqaCpvdAi-----------vg~-------~~-----~mhtv----~~dlCTGC~lCva~CPtdc 161 (198)
T COG2878 111 LIDEANCIGCTKCIQACPVDAI-----------VGA-------TK-----AMHTV----IADLCTGCDLCVAPCPTDC 161 (198)
T ss_pred EecchhccccHHHHHhCChhhh-----------hcc-------ch-----hHHHH----HHHHhcCCCcccCCCCCCc
Confidence 3456789999999999996431 111 11 01111 1235999999999999986
No 190
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=92.89 E-value=0.04 Score=54.19 Aligned_cols=45 Identities=31% Similarity=0.665 Sum_probs=32.4
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+...|+.||.|.. ||..... .+ + . ....-.|..||-|+.+||.|+
T Consensus 559 de~~C~gC~~C~~-Cpf~ais-----------------~~-k--------a----~v~~~~C~gCG~C~~aCp~ga 603 (622)
T COG1148 559 DEDKCTGCGICAE-CPFGAIS-----------------VD-K--------A----EVNPLRCKGCGICSAACPSGA 603 (622)
T ss_pred chhhhcCCcceee-CCCCcee-----------------cc-c--------c----ccChhhhCcccchhhhCCccc
Confidence 4567999999999 9954211 01 1 0 113567999999999999987
No 191
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=92.83 E-value=0.1 Score=51.43 Aligned_cols=46 Identities=33% Similarity=0.726 Sum_probs=35.4
Q ss_pred cCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC-C-----------------eeecccccccc
Q 023670 73 KECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID-G-----------------CNGLACLTKIS 125 (279)
Q Consensus 73 ~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in-G-----------------~~~lAC~t~v~ 125 (279)
++ |+|||||++++|. + .+.-|. .|.||-|.|.|- | ...|||++++.
T Consensus 15 ~~-g~~il~aar~~gv-~-----i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh~k~~~~~g~rlac~~~v~ 79 (614)
T COG3894 15 DE-GTTILDAARRLGV-Y-----IRSVCGGKGTCGKCQVVVQEGNHKIVSSTDHEKYLRERGYRLACQAQVL 79 (614)
T ss_pred CC-CchHHHHHHhhCc-e-----EeeecCCCccccceEEEEEeCCceeccchhHHHHHHhhceeeeeehhhc
Confidence 45 8999999999994 3 344475 599999999873 3 13589999998
No 192
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=92.74 E-value=0.036 Score=50.27 Aligned_cols=46 Identities=26% Similarity=0.543 Sum_probs=30.7
Q ss_pred ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
.+|+.|+.|..+||..... .+... . . ......|+.|+.|..+||.+
T Consensus 169 ~~C~~C~~C~~~CP~~vi~-----------------~d~~~------~--~--v~~~~~C~~C~~C~~~Cp~~ 214 (259)
T cd07030 169 EDCDGCGKCVEECPRGVLE-----------------LEEGK------V--V--VEDLEDCSLCKLCERACDAG 214 (259)
T ss_pred hhCCChHHHHHhCCccceE-----------------ccCCe------e--E--EeChhhCcCchHHHHhCCCC
Confidence 6899999999999964311 01000 0 0 01235799999999999954
No 193
>PRK09898 hypothetical protein; Provisional
Probab=92.58 E-value=0.054 Score=47.55 Aligned_cols=51 Identities=25% Similarity=0.462 Sum_probs=33.8
Q ss_pred ccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 188 GMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 188 ~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
....|++|+ .|+.+||...... +.... . + ......|+.|+.|..+||.++.
T Consensus 119 ~~~~C~~C~~~~C~~~CP~gAi~~-----------------~~~~g----~---v--~vd~~~CigC~~C~~aCP~~ai 171 (208)
T PRK09898 119 TADTCRQCKEPQCMNVCPIGAITW-----------------QQKEG----C---I--TVDHKRCIGCSACTTACPWMMA 171 (208)
T ss_pred eCccCCCccCcchhhhCCcceEEe-----------------eccCC----e---E--EeccccCCCcCcccccCCCCCC
Confidence 456899998 9999999543110 00000 0 1 1134679999999999999874
No 194
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.43 E-value=0.013 Score=59.83 Aligned_cols=21 Identities=29% Similarity=0.626 Sum_probs=17.8
Q ss_pred hhcccccCcccCcccCCCCCc
Q 023670 185 KLDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~ 205 (279)
.+.+.++||.|+.|..+|+..
T Consensus 5 ~~~d~~~C~gC~~C~~aC~~~ 25 (639)
T PRK12809 5 IAAEAAECIGCHACEIACAVA 25 (639)
T ss_pred EEEChhhCcChhHHHHHhhhh
Confidence 345678999999999999975
No 195
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=92.35 E-value=0.82 Score=32.98 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=32.4
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS 127 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g 127 (279)
...++++++ ++|+.|.|.+++. .+ ...+|.+||..+.. .+.+.+|
T Consensus 14 ~~~~~~~~~-~~tv~~ll~~l~~--~~-------------~~v~v~vNg~iv~~-~~~l~~g 58 (70)
T PRK08364 14 IEKEIEWRK-GMKVADILRAVGF--NT-------------ESAIAKVNGKVALE-DDPVKDG 58 (70)
T ss_pred cceEEEcCC-CCcHHHHHHHcCC--CC-------------ccEEEEECCEECCC-CcCcCCC
Confidence 445667777 8999999999863 21 13899999998854 5666665
No 196
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.34 E-value=0.042 Score=56.22 Aligned_cols=55 Identities=18% Similarity=0.449 Sum_probs=34.5
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARAC 259 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vC 259 (279)
..+..+|+.|+.|+.+||..... +....... .. + ......|..|+ .|+.+|
T Consensus 81 ~id~~~C~~C~~C~~~CP~~ai~---------------~~~~~~~~---~~---~--~~~~~~C~~C~~~~~~p~Cv~~C 137 (654)
T PRK12769 81 QVNQQKCIGCKSCVVACPFGTMQ---------------IVLTPVAA---GK---V--KATAHKCDLCAGRENGPACVENC 137 (654)
T ss_pred EEecccccCcChhcccCCccCee---------------ecccCCcc---cc---e--eeecCcCcCCCCCCCCCceeccC
Confidence 34568999999999999954211 00000000 00 0 11346799998 999999
Q ss_pred CCCC
Q 023670 260 PKGL 263 (279)
Q Consensus 260 P~gi 263 (279)
|.++
T Consensus 138 P~~A 141 (654)
T PRK12769 138 PADA 141 (654)
T ss_pred CcCc
Confidence 9876
No 197
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=92.32 E-value=0.029 Score=56.40 Aligned_cols=51 Identities=25% Similarity=0.442 Sum_probs=34.8
Q ss_pred hhcccccCcccCccc--CCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 185 KLDGMYECILCACCS--TSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~--~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
..-+..+|..|+.|. ..||.....+ .. ++.+ + ....|..||.|+++||..
T Consensus 572 ~~Vd~~~CtGC~~C~~~~~Cpsi~~~~-------------------~~--~k~~---i----d~~~C~GCg~C~~iCP~~ 623 (640)
T COG4231 572 YFVDEEKCTGCGDCIVLSGCPSIEPDP-------------------TF--KKAR---I----DPSSCNGCGSCVEVCPSF 623 (640)
T ss_pred ceechhhcCCcHHHHhhcCCceEeecC-------------------CC--Ccee---e----cccccccchhhhhcCchh
Confidence 344678999999998 7899764311 00 0011 1 235599999999999976
Q ss_pred C
Q 023670 263 L 263 (279)
Q Consensus 263 i 263 (279)
+
T Consensus 624 a 624 (640)
T COG4231 624 A 624 (640)
T ss_pred h
Confidence 5
No 198
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=92.26 E-value=0.056 Score=39.16 Aligned_cols=19 Identities=32% Similarity=0.807 Sum_probs=16.8
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
.....|+.||+|+.+||+.
T Consensus 47 ~~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 47 YGEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred cCCccCCCcChHhhhcCCC
Confidence 4677899999999999975
No 199
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=92.14 E-value=0.022 Score=52.95 Aligned_cols=50 Identities=26% Similarity=0.527 Sum_probs=34.1
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
.+...|..||.|+.+||+... .+. +. .+ ......|+.||.|..+||..+.
T Consensus 169 ~~~E~c~gc~~cv~~C~~gAI---------------~~~--~~---------~l--~id~~~Ci~Cg~Ci~~Cp~~~~ 218 (317)
T COG2221 169 VDEELCRGCGKCVKVCPTGAI---------------TWD--GK---------KL--KIDGSKCIGCGKCIRACPKAAF 218 (317)
T ss_pred cCHHHhchhHhHHHhCCCCce---------------eec--cc---------eE--EEehhhccCccHHhhhCChhhc
Confidence 345679999999999997532 111 10 01 1135789999999999995443
No 200
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=91.89 E-value=0.11 Score=53.20 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=26.6
Q ss_pred CccCchhhh---hhhhhCCCCCChHHHHHHHHH
Q 023670 245 KLYRCHTIL---NCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 245 ~~~~C~~Cg---~C~~vCP~gi~~~~~I~~lR~ 274 (279)
...+|..|| .|...||.|+++.+.|..+++
T Consensus 206 ea~rC~~C~~~~~C~~~CP~~~~i~~~~~~~~~ 238 (639)
T PRK12809 206 ESDRCVYCAEKANCNWHCPLHNAIPDYIRLVQE 238 (639)
T ss_pred HHHHHhCCCCCCcccccCCCCCcHHHHHHHHHC
Confidence 357999998 799999999999999988874
No 201
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=91.79 E-value=0.052 Score=49.34 Aligned_cols=47 Identities=28% Similarity=0.623 Sum_probs=31.2
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
..+|+.|+.|..+||..... + +. +. . .+. ....|+.|+.|..+||.+
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~---------------~--~~-~~-----~-~v~---~~~~C~~C~~Ci~~CP~~ 214 (263)
T PRK00783 168 SEDCDECEKCVEACPRGVLE---------------L--KE-GK-----L-VVT---DLLNCSLCKLCERACPGK 214 (263)
T ss_pred cccCCchHHHHHhCCccccE---------------e--cC-Ce-----E-EEe---ChhhCCCchHHHHhCCCC
Confidence 57899999999999954210 0 10 00 0 011 234699999999999965
No 202
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=91.68 E-value=0.058 Score=51.07 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=31.1
Q ss_pred cCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 191 ECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 191 ~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.|..||.|+.+||+..+. +..+..+ .++ ......|+.||.|..+||.+.
T Consensus 182 ~~c~~~~Cv~~CP~~Ai~---------------~~~~~~~----~~~-----~id~~~Ci~Cg~Ci~~CP~~a 230 (341)
T TIGR02066 182 NVCEIPSVVAACPTGALK---------------PRRDGKN----KSL-----EVDVEKCIYCGNCYTMCPAMP 230 (341)
T ss_pred hhcCCCceEeeCchhhce---------------ecccCCC----Cce-----eeccccCCcCCchHHhCchhh
Confidence 477889999999964211 1001000 011 124578999999999999854
No 203
>PRK01777 hypothetical protein; Validated
Probab=91.60 E-value=1.7 Score=33.50 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=45.0
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCC-CCccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEID-PSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~d-ptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~ 125 (279)
++++.|.---|+. ++..++++++ |+|+-||+...|.... |.+.... ..|-|||+.+.. .+.+.
T Consensus 3 ~i~v~V~ya~~~~-----~~~~~l~vp~-GtTv~dal~~sgi~~~~pei~~~~---------~~vgI~Gk~v~~-d~~L~ 66 (95)
T PRK01777 3 KIRVEVVYALPER-----QYLQRLTLQE-GATVEEAIRASGLLELRTDIDLAK---------NKVGIYSRPAKL-TDVLR 66 (95)
T ss_pred eeEEEEEEECCCc-----eEEEEEEcCC-CCcHHHHHHHcCCCccCccccccc---------ceEEEeCeECCC-CCcCC
Confidence 5667766555533 5668888888 9999999999985221 2222111 478899997743 55666
Q ss_pred CCCCceEEe
Q 023670 126 PSGSASTIT 134 (279)
Q Consensus 126 ~g~~~~~ie 134 (279)
+| +.+.|.
T Consensus 67 dG-DRVeIy 74 (95)
T PRK01777 67 DG-DRVEIY 74 (95)
T ss_pred CC-CEEEEe
Confidence 65 444443
No 204
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=91.52 E-value=0.12 Score=50.60 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=27.1
Q ss_pred CccCchhhhhhhhhCCCCCChHHHHHHHHH
Q 023670 245 KLYRCHTILNCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~ 274 (279)
....|+.||.|+++||.++.|..+++.++.
T Consensus 372 ~~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~ 401 (448)
T PRK05352 372 SERAMVPIGNYERVMPLDILPTQLLRALIV 401 (448)
T ss_pred CCcceeecCcHhhcCCCCCCHHHHHHHHHc
Confidence 457999999999999999999999988874
No 205
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=91.43 E-value=0.058 Score=48.68 Aligned_cols=50 Identities=24% Similarity=0.410 Sum_probs=33.1
Q ss_pred ccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 188 GMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 188 ~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
....|++|+. |+.+||..... + ..++. + ......|+.|+.|..+||.++-
T Consensus 96 ~~~~C~~C~~p~Cv~~CP~~Ai~--------------~-~~~G~----------v--~id~~~CigC~~Cv~aCP~~Ai 147 (244)
T PRK14993 96 LPRLCNHCDNPPCVPVCPVQATF--------------Q-REDGI----------V--VVDNKRCVGCAYCVQACPYDAR 147 (244)
T ss_pred cchhcCCcCCccCccccCCCCEE--------------E-CCCCC----------E--EEcHHHCCCHHHHHHhcCCCCC
Confidence 3568999996 99999954210 0 00000 0 1123569999999999999874
No 206
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=91.03 E-value=0.15 Score=50.03 Aligned_cols=30 Identities=13% Similarity=0.026 Sum_probs=26.9
Q ss_pred CccCchhhhhhhhhCCCCCChHHHHHHHHH
Q 023670 245 KLYRCHTILNCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~ 274 (279)
....|+.||.|+++||.++.|..+++.++.
T Consensus 371 ~~~aCI~CG~C~~vCPm~L~P~~L~~a~~~ 400 (447)
T TIGR01936 371 GERAMIPIGIYERVMPLDIPPTLLLKALIA 400 (447)
T ss_pred CccceeECChHhhcCCCCCCHHHHHHHHHc
Confidence 457899999999999999999999988774
No 207
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=90.97 E-value=0.28 Score=41.97 Aligned_cols=19 Identities=11% Similarity=0.108 Sum_probs=16.1
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
.++.|-.|..|..+||.+.
T Consensus 151 ~~~~C~~Cr~~~~~~~~~~ 169 (180)
T PRK12387 151 SFETCPECKRQKCLVPSDR 169 (180)
T ss_pred HHhhCHHHhcccccccccc
Confidence 3578999999999999765
No 208
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=90.94 E-value=0.066 Score=37.92 Aligned_cols=16 Identities=50% Similarity=0.941 Sum_probs=14.5
Q ss_pred CchhhhhhhhhCCCCC
Q 023670 248 RCHTILNCARACPKGL 263 (279)
Q Consensus 248 ~C~~Cg~C~~vCP~gi 263 (279)
.|..||.|+++||.++
T Consensus 1 ~C~~C~~C~~~CP~~A 16 (67)
T PF13484_consen 1 FCITCGKCAEACPTGA 16 (67)
T ss_pred CCcchhHHHHhCcHhh
Confidence 4899999999999876
No 209
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=90.90 E-value=0.2 Score=44.85 Aligned_cols=44 Identities=23% Similarity=0.363 Sum_probs=27.6
Q ss_pred HHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccc
Q 023670 79 VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLT 122 (279)
Q Consensus 79 vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t 122 (279)
+.++|++.|...-=++--+..|..|+||+|+|+..|...+.|+.
T Consensus 195 ~~~~l~~~Gv~~~~s~e~~m~Cg~G~C~~C~~~~~~~~~~~C~~ 238 (248)
T cd06219 195 VSELTRPYGIPTVVSLNPIMVDGTGMCGACRVTVGGETKFACVD 238 (248)
T ss_pred HHHHHHHcCCCEEEEecccccCccceeeeEEEEeCCCEEEEeCc
Confidence 34555554432111222344699999999999998855678864
No 210
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=90.86 E-value=0.048 Score=36.70 Aligned_cols=16 Identities=38% Similarity=0.989 Sum_probs=11.2
Q ss_pred ccccCcccCcccCCCC
Q 023670 188 GMYECILCACCSTSCP 203 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP 203 (279)
+..+||.||.|+.+||
T Consensus 37 ~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 37 DPERCIGCGACVEVCP 52 (52)
T ss_dssp -TTT--TTSHHHHH-T
T ss_pred CcccccccChhhhhCc
Confidence 6788999999999998
No 211
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=90.78 E-value=0.086 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.722 Sum_probs=18.0
Q ss_pred cccccCcccCcccCCCCCccc
Q 023670 187 DGMYECILCACCSTSCPSYWW 207 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~ 207 (279)
.++.+||-||.|+.+||+...
T Consensus 92 In~grCIfCg~C~e~CPt~Al 112 (172)
T COG1143 92 INLGRCIFCGLCVEVCPTGAL 112 (172)
T ss_pred eccccccccCchhhhCchhhh
Confidence 367899999999999998653
No 212
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=90.53 E-value=0.2 Score=44.39 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=24.8
Q ss_pred CccccCCCCCCccCeeEEEECCeeeccccc
Q 023670 93 SLTFRRSCREGICGSCAMNIDGCNGLACLT 122 (279)
Q Consensus 93 tl~~~~~c~~g~CG~C~v~inG~~~lAC~t 122 (279)
++..+..|..|+||+|.|..+|...++|..
T Consensus 209 s~~~~m~Cg~G~C~~C~~~~~~~~~~~C~~ 238 (243)
T cd06192 209 SNNSPMCCGIGICGACTIETKHGVKRLCKD 238 (243)
T ss_pred ECCccccCccccccceEEEeCCCeEEEeCC
Confidence 344556799999999999999888889975
No 213
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=90.42 E-value=0.098 Score=51.08 Aligned_cols=20 Identities=30% Similarity=0.722 Sum_probs=17.8
Q ss_pred ccCchhhhhhhhhCCCCCCh
Q 023670 246 LYRCHTILNCARACPKGLNP 265 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi~~ 265 (279)
...|+.|+.|+.+||.|++.
T Consensus 230 ~~~Ci~C~~Cv~vCP~gi~~ 249 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTGIDI 249 (434)
T ss_pred CCCCCChhhhHHhCCCCCEe
Confidence 57899999999999999854
No 214
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=90.35 E-value=0.067 Score=41.57 Aligned_cols=51 Identities=25% Similarity=0.481 Sum_probs=28.6
Q ss_pred ccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCC
Q 023670 188 GMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 188 ~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~ 264 (279)
....|.+|. .|+.+||+..... +..+. . + ......|+.|+.|..+||.|+.
T Consensus 5 ~~~~C~hC~~ppC~~~CP~~Ai~~-----------------~~~~G----~---V--~id~~~CigC~~C~~aCP~~ai 57 (98)
T PF13247_consen 5 VPVQCRHCEDPPCVEACPTGAIYK-----------------DPEDG----I---V--VIDEDKCIGCGYCVEACPYGAI 57 (98)
T ss_dssp EEEC---BSS-HHHHHCTTTSEEE-----------------ETTTS--------E--EE-TTTCCTHHHHHHH-TTS-E
T ss_pred eCCcCcCcCCCchhhhCCccceEE-----------------EcCCC----e---E--EechhhccCchhhhhhhccCcc
Confidence 356799997 9999999753210 11000 0 1 1235679999999999998874
No 215
>PRK05802 hypothetical protein; Provisional
Probab=90.23 E-value=0.23 Score=46.51 Aligned_cols=33 Identities=30% Similarity=0.726 Sum_probs=26.9
Q ss_pred CccccCCCCCCccCeeEEEECCee-ecccccccc
Q 023670 93 SLTFRRSCREGICGSCAMNIDGCN-GLACLTKIS 125 (279)
Q Consensus 93 tl~~~~~c~~g~CG~C~v~inG~~-~lAC~t~v~ 125 (279)
+|..+..|..|+||+|+|..+|.. .+.|+.++.
T Consensus 285 Sle~~M~CG~G~Cg~C~v~~~g~~~~r~Ck~q~~ 318 (320)
T PRK05802 285 SNNAKMCCGEGICGACTVRYGGHKVKRLCKVQVD 318 (320)
T ss_pred eCCCeeeCcCccCCeeEEEECCEEEEEEeeeecC
Confidence 355566799999999999999854 588998875
No 216
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=89.87 E-value=0.1 Score=44.18 Aligned_cols=20 Identities=35% Similarity=0.850 Sum_probs=17.8
Q ss_pred cccccCcccCcccCCCCCcc
Q 023670 187 DGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~ 206 (279)
.|+.+||-||.|..+||+..
T Consensus 147 IDmtkCIyCG~CqEaCPvda 166 (212)
T KOG3256|consen 147 IDMTKCIYCGFCQEACPVDA 166 (212)
T ss_pred ccceeeeeecchhhhCCccc
Confidence 47899999999999999864
No 217
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=89.84 E-value=0.068 Score=54.75 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.1
Q ss_pred hhhcccccCcccCcccCCCCCcccC
Q 023670 184 AKLDGMYECILCACCSTSCPSYWWT 208 (279)
Q Consensus 184 ~~~~~~~~CI~CG~C~~~CP~~~~~ 208 (279)
.+..|.++||+||+|+++|...+.+
T Consensus 610 ~i~~D~~kCI~CgrCv~~C~ev~~~ 634 (652)
T PRK12814 610 DIRFEREKCVDCGICVRTLEEYGAE 634 (652)
T ss_pred CeEeccccccCchHHHHHHHHhccc
Confidence 4567899999999999999987643
No 218
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=89.82 E-value=0.13 Score=52.91 Aligned_cols=27 Identities=30% Similarity=0.721 Sum_probs=20.2
Q ss_pred ccccCcccCcccCCCCCcccCCCcccC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLG 214 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~g 214 (279)
..+.|+.||.|+.+||+.......++|
T Consensus 190 ~~SSCVsCG~CvtVCP~nALmek~m~g 216 (978)
T COG3383 190 NESSCVSCGACVTVCPVNALMEKSMLG 216 (978)
T ss_pred ccccccccCccceecchhhhhhhhhhc
Confidence 357899999999999987654434444
No 219
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=89.67 E-value=0.17 Score=35.47 Aligned_cols=16 Identities=38% Similarity=0.943 Sum_probs=11.2
Q ss_pred cccCcccCcccCCCCC
Q 023670 189 MYECILCACCSTSCPS 204 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~ 204 (279)
.+.|+.||.|+.+||+
T Consensus 38 ~~~C~GCg~C~~~CPv 53 (59)
T PF14697_consen 38 PDKCIGCGLCVKVCPV 53 (59)
T ss_dssp -TT--S-SCCCCCSSS
T ss_pred cccCcCcCcccccCCC
Confidence 5789999999999996
No 220
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=89.35 E-value=0.078 Score=35.72 Aligned_cols=16 Identities=38% Similarity=0.918 Sum_probs=10.2
Q ss_pred CchhhhhhhhhCCCCC
Q 023670 248 RCHTILNCARACPKGL 263 (279)
Q Consensus 248 ~C~~Cg~C~~vCP~gi 263 (279)
+|+.||.|+.+||.++
T Consensus 1 ~C~~C~~C~~~CP~~~ 16 (52)
T PF12838_consen 1 KCIGCGACVEACPTGA 16 (52)
T ss_dssp C-SS--HHHHH-TTHH
T ss_pred CCCCcCchHHhcCccc
Confidence 5999999999999764
No 221
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=89.12 E-value=0.23 Score=43.62 Aligned_cols=53 Identities=25% Similarity=0.412 Sum_probs=35.3
Q ss_pred hcccccCccc--CcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILC--ACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~C--G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
++-...|.+| --|+.+||+.... + +..+. +. ......|+.||.|..+||.|+
T Consensus 63 ~~~~~~C~HC~~ppCv~vCPtgA~~--------------k---~~~dG--------iV-~vd~d~CIGC~yCi~ACPyga 116 (203)
T COG0437 63 YYLSISCMHCEDPPCVKVCPTGALF--------------K---REEDG--------IV-LVDKDLCIGCGYCIAACPYGA 116 (203)
T ss_pred EEecccccCCCCCcccccCCCcceE--------------E---ecCCC--------EE-EecCCcccCchHHHhhCCCCC
Confidence 3445679999 6799999975311 0 00010 10 123578999999999999999
Q ss_pred C
Q 023670 264 N 264 (279)
Q Consensus 264 ~ 264 (279)
.
T Consensus 117 ~ 117 (203)
T COG0437 117 P 117 (203)
T ss_pred c
Confidence 5
No 222
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=88.96 E-value=0.3 Score=43.65 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=30.5
Q ss_pred HHHHHHHcccCCCCCccccC--CCCCCccCeeEEEEC---Ceeeccccc
Q 023670 79 VLDALIKIKSEIDPSLTFRR--SCREGICGSCAMNID---GCNGLACLT 122 (279)
Q Consensus 79 vLdal~~~~~~~dptl~~~~--~c~~g~CG~C~v~in---G~~~lAC~t 122 (279)
+.++|++.|. +..++... -|.+|+||.|.+... |.+.++|+.
T Consensus 195 ~~~~L~~~Gv--~~~~~~~~~~~~~~g~c~~c~~~~~~~~~~~~~~c~~ 241 (246)
T cd06218 195 VAELAAERGV--PCQVSLEERMACGIGACLGCVVKTKDDEGGYKRVCKD 241 (246)
T ss_pred HHHHHHhcCC--CEEEEecccccCccceecccEEEeecCCCccEEEeCc
Confidence 4455665553 34455444 399999999999997 999999974
No 223
>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]
Probab=88.83 E-value=0.67 Score=42.92 Aligned_cols=65 Identities=23% Similarity=0.481 Sum_probs=44.0
Q ss_pred CceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC--C-------
Q 023670 45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID--G------- 114 (279)
Q Consensus 45 ~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in--G------- 114 (279)
...++++|-- ||+ ++ ..++. |.++|.+|...|+ .+| ..|. .|.||-|-|.|. |
T Consensus 34 ~gd~ti~IN~-d~e-------~~--~t~~a-G~kLL~~L~~~gi-fi~-----SaCGGggsC~QCkv~v~~ggge~LpTe 96 (410)
T COG2871 34 VGDITIKING-DPE-------KT--KTVPA-GGKLLGALASSGI-FIS-----SACGGGGSCGQCKVRVKKGGGEILPTE 96 (410)
T ss_pred cCceEEEeCC-Chh-------hc--eecCC-chhHHHHHHhCCc-ccc-----cCCCCCccccccEEEEecCCCccCcch
Confidence 3457788832 222 23 45556 8999999999884 333 3375 489999999973 2
Q ss_pred -----------eeeccccccccC
Q 023670 115 -----------CNGLACLTKISP 126 (279)
Q Consensus 115 -----------~~~lAC~t~v~~ 126 (279)
..+|||++.|+.
T Consensus 97 ~sh~skrea~eG~RLsCQ~~Vk~ 119 (410)
T COG2871 97 LSHISKREAKEGWRLSCQVNVKH 119 (410)
T ss_pred hhhhhhhhhhccceEEEEecccc
Confidence 135899999984
No 224
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=88.66 E-value=0.36 Score=44.13 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=30.3
Q ss_pred HHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccc
Q 023670 79 VLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 121 (279)
Q Consensus 79 vLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~ 121 (279)
+.++|++.|....-+|..+-.|..|+||.|+|...|...+.|.
T Consensus 196 v~~~l~~~gv~~~~sle~~M~CG~G~C~~C~v~~~~~~~~~C~ 238 (281)
T PRK06222 196 VAELTKPYGIKTIVSLNPIMVDGTGMCGACRVTVGGETKFACV 238 (281)
T ss_pred HHHHHHhcCCCEEEECcccccCcccccceeEEEECCCEEEEeC
Confidence 4455555553222356667789999999999999885567886
No 225
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=88.37 E-value=0.4 Score=45.28 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=35.5
Q ss_pred ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
+.|-.|..|..+||+.........-+.--+. +.....+.. ..+....+ ...++ .|+-|..+||.+
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis-~lt~~~~~~--p~e~r~~~--~n~iy---gCd~C~~vCPwn 249 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAPYTVDARRCIS-YLTIEKGGA--PEEFRPLI--GNRIY---GCDICQKVCPWN 249 (337)
T ss_pred ccChhhHHHHhhCCcccccCCCccchhHHhh-hhhhhccCC--cHHHHHhc--cCcee---cCchHHHhCCcc
Confidence 7899999999999987654333332221111 111111111 12222222 22445 489999999976
No 226
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=88.34 E-value=0.056 Score=37.54 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=12.0
Q ss_pred CchhhhhhhhhCCCCCCh
Q 023670 248 RCHTILNCARACPKGLNP 265 (279)
Q Consensus 248 ~C~~Cg~C~~vCP~gi~~ 265 (279)
.|+.||.|..+||+++..
T Consensus 1 ~C~~Cg~C~~~CP~~~~~ 18 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIAT 18 (61)
T ss_dssp T----STTGGGSHHHHHC
T ss_pred CCCCCCcCcccCCCcccc
Confidence 499999999999988863
No 227
>PF10418 DHODB_Fe-S_bind: Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B; InterPro: IPR019480 Lactococcus lactis is one of the few organisms with two dihydroorotate dehydrogenases (DHODs) A and B []. The B enzyme is typical of DHODs in Gram-positive bacteria that use NAD+ as the second substrate. DHODB is a heterotetramer composed of a central homodimer of PyrDB subunits resembling the DHODA structure and two PyrK subunits along with three different cofactors: FMN, FAD, and a [2Fe-2S] cluster. The [2Fe-2S] iron-sulphur cluster binds to this C-terminal domain of the PyrK subunit, which is at the interface between the flavin and NAD binding domains and contains three beta-strands. The four cysteine residues at the N-terminal part of this domain are the ones that bind, in pairs, to the iron-sulphur cluster. The conformation of the whole molecule means that the iron-sulphur cluster is localized in a well-ordered part of this domain close to the FAD binding site []. The FAD and NAD binding domains are IPR008333 from INTERPRO and IPR001433 from INTERPRO respectively. ; PDB: 1EP2_B 1EP3_B 1EP1_B.
Probab=87.38 E-value=0.39 Score=31.06 Aligned_cols=24 Identities=25% Similarity=0.710 Sum_probs=18.2
Q ss_pred CCCCCCccCeeEEEECCe--eecccc
Q 023670 98 RSCREGICGSCAMNIDGC--NGLACL 121 (279)
Q Consensus 98 ~~c~~g~CG~C~v~inG~--~~lAC~ 121 (279)
-.|..|+|+.|.|...+. ..+.|.
T Consensus 4 M~CG~G~C~~C~v~~~~~~~~~~vC~ 29 (40)
T PF10418_consen 4 MACGVGACGGCVVPVKDGDGYKRVCK 29 (40)
T ss_dssp -SSSSSSS-TTEEECSSTTSEEETTT
T ss_pred ccCCCcEeCCcEeeeecCCcCEEEeC
Confidence 469999999999998865 666775
No 228
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=87.05 E-value=0.029 Score=38.38 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=13.5
Q ss_pred ccCchhhhhhhhhCCCCCChH
Q 023670 246 LYRCHTILNCARACPKGLNPG 266 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi~~~ 266 (279)
+..|+.||.|..+||+.....
T Consensus 2 ~~~Ci~Cg~C~~~CP~~~~~~ 22 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVYRNTG 22 (57)
T ss_dssp HHC--S-SHHHHCSHHHHHHH
T ss_pred HHHccCccChHHHChhhhccc
Confidence 357999999999999555443
No 229
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=86.74 E-value=0.42 Score=42.21 Aligned_cols=40 Identities=30% Similarity=0.620 Sum_probs=25.6
Q ss_pred hHHHHHHHcccCCCCCcccc--CCCCCCccCeeEEEECCeeecccc
Q 023670 78 MVLDALIKIKSEIDPSLTFR--RSCREGICGSCAMNIDGCNGLACL 121 (279)
Q Consensus 78 tvLdal~~~~~~~dptl~~~--~~c~~g~CG~C~v~inG~~~lAC~ 121 (279)
.+.++|++.|. +-.+.+. ..|..|+||+|.|..+|+ ++|.
T Consensus 181 ~~~~~L~~~g~--~~~i~~e~f~~cg~g~C~~C~v~~~~~--~~c~ 222 (233)
T cd06220 181 KVLEILDERGV--RAQFSLERYMKCGIGICGSCCIDPTGL--RVCR 222 (233)
T ss_pred HHHHHHHhcCC--cEEEEecccccCcCCCcCccEeccCCe--EEeC
Confidence 34455555542 1123332 259999999999999984 5775
No 230
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=86.20 E-value=0.34 Score=44.49 Aligned_cols=43 Identities=28% Similarity=0.478 Sum_probs=31.0
Q ss_pred HHHHHHHcccC---CCCCccccCCCCCCccCeeEEEECCeeecccc
Q 023670 79 VLDALIKIKSE---IDPSLTFRRSCREGICGSCAMNIDGCNGLACL 121 (279)
Q Consensus 79 vLdal~~~~~~---~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~ 121 (279)
+.++|++.|.. .--+|.++..|..|.||+|.|..++...++|.
T Consensus 227 v~~~L~~~Gv~~~~i~~~l~~~m~cg~g~c~~c~~~~~~~~~~~c~ 272 (289)
T PRK08345 227 VFKELINRGYRPERIYVTLERRMRCGIGKCGHCIVGTSTSIKYVCK 272 (289)
T ss_pred HHHHHHHcCCCHHHEEEEehhcccccCcccCCCccCCCCcceEEeC
Confidence 56666666531 12357778889999999999998885557885
No 231
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=85.52 E-value=0.4 Score=41.72 Aligned_cols=31 Identities=29% Similarity=0.494 Sum_probs=25.4
Q ss_pred ccCchhhhhhhhhCCCCC----ChHHHHHHHHHHH
Q 023670 246 LYRCHTILNCARACPKGL----NPGKQIINIKQLQ 276 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi----~~~~~I~~lR~~~ 276 (279)
+..|.+||.|+..||.|. ++-.+|..++.-+
T Consensus 38 l~~C~QCG~CT~sCPs~r~t~y~pR~ii~~~~~g~ 72 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRFTDYSPRKIIRKARLGL 72 (195)
T ss_pred HhHhhccCcccCCCCCcccCCCCHHHHHHHHHccc
Confidence 567999999999999875 6778888887543
No 232
>PLN00071 photosystem I subunit VII; Provisional
Probab=85.04 E-value=0.28 Score=36.13 Aligned_cols=27 Identities=30% Similarity=0.886 Sum_probs=19.2
Q ss_pred cccCcccCcccCCCCCcccCCCcccCH
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGP 215 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP 215 (279)
...|+.||.|..+||.....-..|.|+
T Consensus 45 ~~~C~~Cg~C~~~CP~~Ai~~~~~~~~ 71 (81)
T PLN00071 45 TEDCVGCKRCESACPTDFLSVRVYLGH 71 (81)
T ss_pred CCcCcChhhHHhhcCCccceEeeeecc
Confidence 467999999999999764332334443
No 233
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=84.91 E-value=0.41 Score=35.25 Aligned_cols=19 Identities=32% Similarity=0.723 Sum_probs=16.6
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|..+||+++
T Consensus 6 ~~~~Ci~C~~Cv~~CP~~~ 24 (80)
T TIGR03048 6 IYDTCIGCTQCVRACPTDV 24 (80)
T ss_pred cCCcCcCcchHHHHCCccc
Confidence 3578999999999999875
No 234
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=84.78 E-value=0.24 Score=37.19 Aligned_cols=18 Identities=28% Similarity=0.726 Sum_probs=15.9
Q ss_pred CccCchhhhhhhhhCCCC
Q 023670 245 KLYRCHTILNCARACPKG 262 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~g 262 (279)
....|+.||.|+.+||.+
T Consensus 27 ~~~~Ci~Cg~C~~~CP~~ 44 (99)
T COG1145 27 DAEKCIGCGLCVKVCPTG 44 (99)
T ss_pred CccccCCCCCchhhCCHH
Confidence 346699999999999998
No 235
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=84.72 E-value=3.4 Score=28.99 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=30.0
Q ss_pred eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeee---ccccccccCC
Q 023670 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNG---LACLTKISPS 127 (279)
Q Consensus 71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~---lAC~t~v~~g 127 (279)
++++ +.||.++|...+. .+ - ..+|++||..+ ..+.+.+.+|
T Consensus 11 ~~~~-~~tl~~lL~~l~~--~~-------~------~vav~vNg~iv~r~~~~~~~l~~g 54 (66)
T PRK05659 11 ELPD-GESVAALLAREGL--AG-------R------RVAVEVNGEIVPRSQHASTALREG 54 (66)
T ss_pred EcCC-CCCHHHHHHhcCC--CC-------C------eEEEEECCeEeCHHHcCcccCCCC
Confidence 4456 7999999998763 11 0 26899999654 3799999986
No 236
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=84.42 E-value=0.51 Score=48.82 Aligned_cols=29 Identities=31% Similarity=0.423 Sum_probs=23.8
Q ss_pred CccCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670 245 KLYRCHTILNCARACPKGLNPGKQIINIK 273 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR 273 (279)
....|+.||.|+.+||.++-+..+...++
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~ 396 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAK 396 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhh
Confidence 45789999999999999998877665444
No 237
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=83.89 E-value=0.72 Score=36.60 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=19.6
Q ss_pred ccCchhh--hhhhhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCHTI--LNCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~~C--g~C~~vCP~gi~~~~~I~~lR~ 274 (279)
..+|+.| --|...||.++|+.+.|..++.
T Consensus 21 a~rC~~c~~~pC~~aCP~~~dip~~i~~i~~ 51 (111)
T PF14691_consen 21 ASRCLQCEDPPCQAACPAHIDIPEYIRLIRE 51 (111)
T ss_dssp HHHS---TT-HHHHTSTT---HHHHHHHHHC
T ss_pred HhhccCCCCCCcccCCCCCCcHHHHHHHHHC
Confidence 5689999 6899999999999999998874
No 238
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=83.76 E-value=0.49 Score=47.46 Aligned_cols=28 Identities=29% Similarity=0.530 Sum_probs=25.3
Q ss_pred ccCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670 246 LYRCHTILNCARACPKGLNPGKQIINIK 273 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi~~~~~I~~lR 273 (279)
...|+.||+|..+||.++++.+++....
T Consensus 399 a~kc~~cG~C~~~CP~~l~i~eam~~A~ 426 (772)
T COG1152 399 ARKCTYCGNCMRACPNELDIPEAMEYAA 426 (772)
T ss_pred HHhcccccchhccCCcccchHHHHHHhh
Confidence 5789999999999999999999987665
No 239
>CHL00065 psaC photosystem I subunit VII
Probab=83.62 E-value=0.47 Score=34.99 Aligned_cols=18 Identities=33% Similarity=0.802 Sum_probs=15.9
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||.++
T Consensus 8 ~~~Ci~Cg~C~~~CP~~~ 25 (81)
T CHL00065 8 YDTCIGCTQCVRACPTDV 25 (81)
T ss_pred cccCCChhHHHHHCCccc
Confidence 457999999999999875
No 240
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=83.40 E-value=0.5 Score=42.36 Aligned_cols=60 Identities=30% Similarity=0.582 Sum_probs=42.7
Q ss_pred hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+..-.-|+.||.|.+.||..... -.|| + ....+|..||.|...||..+
T Consensus 184 ~ll~qg~~C~G~~TC~A~CP~~ai~---c~Gc-------------~--------------g~~~~~~~~Ga~~v~~~rs~ 233 (247)
T COG1941 184 CLLEQGLPCMGCGTCAASCPSRAIP---CRGC-------------R--------------GNIPRCIKCGACFVSCPRSK 233 (247)
T ss_pred eeecCCCcccCchhhhccCCccCCc---ccCC-------------c--------------CCcccchhhhHHHHHHhHHh
Confidence 3444555899999999999976421 1121 1 13567999999999999998
Q ss_pred ChHHHHHHHHH
Q 023670 264 NPGKQIINIKQ 274 (279)
Q Consensus 264 ~~~~~I~~lR~ 274 (279)
-+ ++|++|..
T Consensus 234 ~~-ei~~~l~~ 243 (247)
T COG1941 234 GP-EIIEELKD 243 (247)
T ss_pred hH-HHHHHhhh
Confidence 76 77777653
No 241
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=83.39 E-value=0.48 Score=37.75 Aligned_cols=19 Identities=26% Similarity=0.767 Sum_probs=16.7
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||.++
T Consensus 40 ~~~~Ci~C~~C~~~CP~~a 58 (120)
T PRK08348 40 DVDKCVGCRMCVTVCPAGV 58 (120)
T ss_pred CcccCcCcccHHHHCCccc
Confidence 3578999999999999876
No 242
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=83.23 E-value=0.41 Score=37.11 Aligned_cols=19 Identities=32% Similarity=0.770 Sum_probs=16.6
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||.++
T Consensus 14 d~~~Ci~C~~Cv~aCP~~a 32 (103)
T PRK09626 14 DESRCKACDICVSVCPAGV 32 (103)
T ss_pred CcccccCCcchhhhcChhh
Confidence 3568999999999999875
No 243
>COG1146 Ferredoxin [Energy production and conversion]
Probab=82.77 E-value=0.45 Score=33.95 Aligned_cols=20 Identities=35% Similarity=0.776 Sum_probs=17.3
Q ss_pred hcccccCcccCcccCCCCCc
Q 023670 186 LDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~ 205 (279)
..+.+.|+.||.|..+||+.
T Consensus 37 ~~~~e~C~~C~~C~~~CP~~ 56 (68)
T COG1146 37 VARPEECIDCGLCELACPVG 56 (68)
T ss_pred EeccccCccchhhhhhCCcc
Confidence 45678899999999999976
No 244
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=82.67 E-value=0.4 Score=35.98 Aligned_cols=19 Identities=16% Similarity=0.501 Sum_probs=16.4
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||.++
T Consensus 19 ~~~~Ci~C~~Cv~~CP~~~ 37 (91)
T TIGR02936 19 DQEKCIGCGRCYKVCGRDV 37 (91)
T ss_pred CHhHCCCcchHHHHcChhh
Confidence 4567999999999999775
No 245
>PRK02651 photosystem I subunit VII; Provisional
Probab=82.55 E-value=0.34 Score=35.62 Aligned_cols=28 Identities=32% Similarity=0.873 Sum_probs=19.8
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHH
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPA 216 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~ 216 (279)
...|+.||.|+.+||.....-..|+||+
T Consensus 45 ~~~C~~Cg~C~~~CP~~ai~~~~~~~~~ 72 (81)
T PRK02651 45 TEDCVGCKRCETACPTDFLSIRVYLGAE 72 (81)
T ss_pred CCcCCChhhhhhhcCCCceEEEEEeccc
Confidence 4579999999999997543223456653
No 246
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=82.37 E-value=5.3 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.149 Sum_probs=29.2
Q ss_pred eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec---cccccccCC
Q 023670 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL---ACLTKISPS 127 (279)
Q Consensus 71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l---AC~t~v~~g 127 (279)
++++ ++||.|+|...+. .| ...+|.+||+.+. --.+.+.+|
T Consensus 9 ~~~~-~~tv~~ll~~l~~--~~-------------~~v~v~vN~~iv~~~~~~~~~L~~g 52 (64)
T TIGR01683 9 EVED-GLTLAALLESLGL--DP-------------RRVAVAVNGEIVPRSEWDDTILKEG 52 (64)
T ss_pred EcCC-CCcHHHHHHHcCC--CC-------------CeEEEEECCEEcCHHHcCceecCCC
Confidence 4456 7899999998863 22 2379999998764 445677766
No 247
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=82.27 E-value=0.98 Score=41.25 Aligned_cols=20 Identities=20% Similarity=0.650 Sum_probs=17.2
Q ss_pred CccCchhhhhhhhhCCCCCC
Q 023670 245 KLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~ 264 (279)
....|+.|+.|..+||.++.
T Consensus 206 d~~~C~~C~~C~~~CP~~~i 225 (271)
T PRK09477 206 DRQKCTRCMDCFHVCPEPQV 225 (271)
T ss_pred CcccCcccCCcCCcCCCcce
Confidence 45789999999999999864
No 248
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=81.61 E-value=0.66 Score=39.05 Aligned_cols=19 Identities=32% Similarity=0.560 Sum_probs=16.4
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||.++
T Consensus 56 ~~~~Ci~C~~C~~~CP~~a 74 (164)
T PRK05888 56 GEERCIACKLCAAICPADA 74 (164)
T ss_pred CCccCCcccChHHHcCccc
Confidence 3568999999999999874
No 249
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=81.60 E-value=0.7 Score=41.83 Aligned_cols=18 Identities=22% Similarity=0.743 Sum_probs=16.2
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.|+.|.++||.++
T Consensus 200 ~~~C~~C~~C~~vCP~~~ 217 (255)
T TIGR02163 200 REKCTNCMDCFNVCPEPQ 217 (255)
T ss_pred cccCeEcCCccCcCCCCc
Confidence 467999999999999885
No 250
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=81.57 E-value=0.85 Score=44.54 Aligned_cols=27 Identities=22% Similarity=0.364 Sum_probs=22.3
Q ss_pred cCccCchhhhhhhhhCCCCCChHHHHH
Q 023670 244 FKLYRCHTILNCARACPKGLNPGKQII 270 (279)
Q Consensus 244 ~~~~~C~~Cg~C~~vCP~gi~~~~~I~ 270 (279)
.....|+.||.|..+||.++.+..+..
T Consensus 360 ~~~~~Ci~Cg~C~~vCP~~l~p~~l~~ 386 (435)
T TIGR01945 360 SPEKPCIRCGKCVQVCPMNLLPQQLNW 386 (435)
T ss_pred ccCCcCcCccchhhhCccchhhHHHHH
Confidence 356899999999999999987766544
No 251
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=81.43 E-value=0.89 Score=32.26 Aligned_cols=13 Identities=15% Similarity=0.695 Sum_probs=10.9
Q ss_pred EEEEEeeCCCCCC
Q 023670 49 KFQIYRWNPDSPS 61 (279)
Q Consensus 49 ~~~i~R~~p~~~~ 61 (279)
++|||||||++.+
T Consensus 40 ~iKIfkyd~~tNe 52 (63)
T PF14157_consen 40 QIKIFKYDEDTNE 52 (63)
T ss_dssp EEEEEEEETTTTE
T ss_pred eEEEEEeCCCCCe
Confidence 6899999998753
No 252
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=81.00 E-value=0.56 Score=33.18 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=16.4
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+..+||.||.|+..||.+.
T Consensus 4 D~~~C~gcg~C~~~aP~vF 22 (65)
T PF13459_consen 4 DRDRCIGCGLCVELAPEVF 22 (65)
T ss_pred ecccCcCccHHHhhCCccE
Confidence 4678999999999999754
No 253
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=80.58 E-value=0.75 Score=38.96 Aligned_cols=19 Identities=32% Similarity=0.742 Sum_probs=16.7
Q ss_pred ccCchhhhhhhhhCCCCCC
Q 023670 246 LYRCHTILNCARACPKGLN 264 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi~ 264 (279)
...|+.||.|+.+||.++.
T Consensus 58 ~~~Ci~Cg~C~~aCP~~~~ 76 (167)
T CHL00014 58 FDKCIACEVCVRVCPIDLP 76 (167)
T ss_pred cccCCCcCcHHHhCCCCCc
Confidence 5679999999999999863
No 254
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=80.33 E-value=1.1 Score=44.45 Aligned_cols=27 Identities=33% Similarity=0.484 Sum_probs=23.0
Q ss_pred cCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670 247 YRCHTILNCARACPKGLNPGKQIINIK 273 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~gi~~~~~I~~lR 273 (279)
..|..|+.|+++||+++.+..+-...+
T Consensus 365 ~sCi~C~~C~d~CP~~Llp~ql~~~a~ 391 (529)
T COG4656 365 QSCIRCSLCADACPVNLLPQQLYWFAK 391 (529)
T ss_pred hccccHHHHHHhCccccCHHHhhHHhh
Confidence 389999999999999999888665544
No 255
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=80.13 E-value=0.76 Score=39.62 Aligned_cols=19 Identities=32% Similarity=0.784 Sum_probs=16.8
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||.++
T Consensus 60 ~~~kCi~Cg~C~~aCP~~a 78 (183)
T TIGR00403 60 EFDKCIACEVCVRVCPINL 78 (183)
T ss_pred CcccCcCcCChhhhCCCCc
Confidence 3568999999999999986
No 256
>PRK06273 ferredoxin; Provisional
Probab=79.53 E-value=0.76 Score=39.06 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.5
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|..+||.++
T Consensus 47 d~~~CigCg~C~~aCP~~A 65 (165)
T PRK06273 47 FEELCIGCGGCANVCPTKA 65 (165)
T ss_pred CchhCcChhHHHHhcCccc
Confidence 3468999999999999875
No 257
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=79.50 E-value=2.2 Score=42.07 Aligned_cols=25 Identities=28% Similarity=0.494 Sum_probs=20.1
Q ss_pred hhhcccccCcccC-cccCCCCCcccC
Q 023670 184 AKLDGMYECILCA-CCSTSCPSYWWT 208 (279)
Q Consensus 184 ~~~~~~~~CI~CG-~C~~~CP~~~~~ 208 (279)
.......+|+.|+ .|...||+....
T Consensus 17 ~a~~~a~rCl~C~~~C~~~cp~~~~I 42 (457)
T COG0493 17 AAIYEAARCLDCGDPCITGCPVHNDI 42 (457)
T ss_pred HHHHHHHHHHcCCCccccCCcCCCcC
Confidence 3456688999999 699999988643
No 258
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=79.48 E-value=0.59 Score=37.06 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.6
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|..+||.++
T Consensus 42 ~~~Ci~C~~C~~~CP~~a 59 (122)
T TIGR01971 42 EEKCIGCTLCAAVCPADA 59 (122)
T ss_pred cCcCcCcchhhhhcCHhH
Confidence 478999999999999653
No 259
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=79.41 E-value=0.43 Score=33.18 Aligned_cols=18 Identities=28% Similarity=0.704 Sum_probs=11.7
Q ss_pred cccCcccCcccCCCCCcc
Q 023670 189 MYECILCACCSTSCPSYW 206 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~ 206 (279)
..+||.||.|...+|...
T Consensus 3 ~~~Ci~Cg~C~~~aP~vF 20 (58)
T PF13370_consen 3 RDKCIGCGLCVEIAPDVF 20 (58)
T ss_dssp TTT--S-SHHHHH-TTTE
T ss_pred hhhCcCCChHHHhCcHhe
Confidence 568999999999999754
No 260
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=79.26 E-value=0.71 Score=39.27 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=17.3
Q ss_pred hcccccCcccCcccCCCCCcc
Q 023670 186 LDGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~ 206 (279)
..+..+||.||+|+.+||...
T Consensus 78 ~V~~ekCiGC~~C~~aCPfGa 98 (165)
T COG1142 78 QVDEEKCIGCKLCVVACPFGA 98 (165)
T ss_pred EEchhhccCcchhhhcCCcce
Confidence 345689999999999999543
No 261
>PRK06437 hypothetical protein; Provisional
Probab=79.07 E-value=7.7 Score=27.67 Aligned_cols=46 Identities=15% Similarity=0.170 Sum_probs=29.8
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCceEE
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTI 133 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~i 133 (279)
+++++ +.|+.|.|.+++. ++ . ..+|.+||..+. =.+.+.+| +.+.|
T Consensus 15 ~~i~~-~~tv~dLL~~Lgi--~~----~---------~vaV~vNg~iv~-~~~~L~dg-D~Vei 60 (67)
T PRK06437 15 IEIDH-ELTVNDIIKDLGL--DE----E---------EYVVIVNGSPVL-EDHNVKKE-DDVLI 60 (67)
T ss_pred EEcCC-CCcHHHHHHHcCC--CC----c---------cEEEEECCEECC-CceEcCCC-CEEEE
Confidence 34456 7999999999873 21 1 279999999876 33444454 34433
No 262
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=78.90 E-value=0.75 Score=39.10 Aligned_cols=18 Identities=33% Similarity=0.600 Sum_probs=16.5
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|..+||.|+
T Consensus 81 ~ekCiGC~~C~~aCPfGa 98 (165)
T COG1142 81 EEKCIGCKLCVVACPFGA 98 (165)
T ss_pred hhhccCcchhhhcCCcce
Confidence 468999999999999987
No 263
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=78.82 E-value=1 Score=35.77 Aligned_cols=22 Identities=23% Similarity=0.804 Sum_probs=13.3
Q ss_pred hhcccccCccc--CcccCCCCCcc
Q 023670 185 KLDGMYECILC--ACCSTSCPSYW 206 (279)
Q Consensus 185 ~~~~~~~CI~C--G~C~~~CP~~~ 206 (279)
...+.++|+.| .-|..+||...
T Consensus 17 ~~~ea~rC~~c~~~pC~~aCP~~~ 40 (111)
T PF14691_consen 17 AIEEASRCLQCEDPPCQAACPAHI 40 (111)
T ss_dssp HHHHHHHS---TT-HHHHTSTT--
T ss_pred HHHHHhhccCCCCCCcccCCCCCC
Confidence 44567899999 79999999764
No 264
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=78.20 E-value=1.2 Score=46.36 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=24.0
Q ss_pred CccCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670 245 KLYRCHTILNCARACPKGLNPGKQIINIK 273 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR 273 (279)
....|+.||.|..+||.++.+.+.+..++
T Consensus 363 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~ 391 (731)
T cd01916 363 LAAKCTDCGWCTRACPNSLRIKEAMEAAK 391 (731)
T ss_pred hhhcCCCCCcccccCCCCCcHHHHHHHHh
Confidence 46789999999999999988777665544
No 265
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=78.14 E-value=2.2 Score=40.76 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.1
Q ss_pred CchhhhhhhhhCCCCCChHHHHHHHHHH
Q 023670 248 RCHTILNCARACPKGLNPGKQIINIKQL 275 (279)
Q Consensus 248 ~C~~Cg~C~~vCP~gi~~~~~I~~lR~~ 275 (279)
.|+.|+.|.. ||.||++...+.-....
T Consensus 294 ~Ct~C~yC~P-CP~gInIP~~f~lyN~~ 320 (391)
T COG1453 294 PCTGCRYCLP-CPSGINIPEIFRLYNLA 320 (391)
T ss_pred CCccccccCc-CCCCCChHHHHHHHHHH
Confidence 3999999999 99999999988766543
No 266
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=77.59 E-value=1.3 Score=46.25 Aligned_cols=28 Identities=25% Similarity=0.600 Sum_probs=23.1
Q ss_pred CccCchhhhhhhhhCCCCCChHHHHHHH
Q 023670 245 KLYRCHTILNCARACPKGLNPGKQIINI 272 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~l 272 (279)
....|+.||.|..+||.++.+.+.+...
T Consensus 397 ~~~kCI~CG~Cv~aCP~~l~i~e~i~~a 424 (784)
T TIGR00314 397 LANKCTQCGNCVRTCPNSLRVDEAMAHA 424 (784)
T ss_pred hcccCCCcccchhhCCCCcchHHHHHHH
Confidence 4689999999999999998877666543
No 267
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=77.17 E-value=1.1 Score=32.53 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=16.5
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.|+.|..+||.++
T Consensus 23 ~~~~C~~C~~C~~~Cp~~a 41 (78)
T TIGR02179 23 DKEKCIKCKNCWLYCPEGA 41 (78)
T ss_pred cCCcCcChhHHHhhcCccc
Confidence 3578999999999999875
No 268
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=76.64 E-value=1.6 Score=40.20 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=16.2
Q ss_pred CccCchhhhhhhhhCCCC
Q 023670 245 KLYRCHTILNCARACPKG 262 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~g 262 (279)
....|+.||.|..+||..
T Consensus 150 ~~~~CI~CG~C~~~CP~~ 167 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVV 167 (279)
T ss_pred cchhCcccCcccccCCCc
Confidence 468999999999999975
No 269
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=76.56 E-value=1.2 Score=34.37 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.5
Q ss_pred hhcccccCcccCcccCCCCCc
Q 023670 185 KLDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~ 205 (279)
...+..+||.||.|+-+||..
T Consensus 56 V~vd~e~CigCg~C~~~C~~~ 76 (95)
T PRK15449 56 VRFDYAGCLECGTCRILGLGS 76 (95)
T ss_pred EEEcCCCCCcchhhhhhcCCC
Confidence 345678999999999999865
No 270
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=76.24 E-value=11 Score=26.31 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=29.4
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecc---ccccccCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA---CLTKISPS 127 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lA---C~t~v~~g 127 (279)
+.|++ ++ ++||.++|.+.+. .+ ..++|.+||+.+.- ..+.+.+|
T Consensus 7 ~~~~~--~~-~~tv~~ll~~l~~--~~-------------~~i~V~vNg~~v~~~~~~~~~L~~g 53 (65)
T cd00565 7 EPREV--EE-GATLAELLEELGL--DP-------------RGVAVALNGEIVPRSEWASTPLQDG 53 (65)
T ss_pred eEEEc--CC-CCCHHHHHHHcCC--CC-------------CcEEEEECCEEcCHHHcCceecCCC
Confidence 34444 45 7899999999863 11 13799999987642 34667765
No 271
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=75.68 E-value=1.3 Score=34.25 Aligned_cols=19 Identities=26% Similarity=0.490 Sum_probs=16.5
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.|+.|..+||.++
T Consensus 32 ~~~~C~~C~~C~~~CP~~~ 50 (101)
T TIGR00402 32 FSAVCTRCGECASACENNI 50 (101)
T ss_pred CcCcCcChhHHHHHcCccc
Confidence 3468999999999999875
No 272
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=75.21 E-value=1.3 Score=40.10 Aligned_cols=18 Identities=33% Similarity=0.719 Sum_probs=16.7
Q ss_pred CccCchhhhhhhhhCCCC
Q 023670 245 KLYRCHTILNCARACPKG 262 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~g 262 (279)
....|+.||.|+.+||+.
T Consensus 155 ~~~~CI~CG~C~saCP~~ 172 (250)
T PRK07570 155 DAAACIGCGACVAACPNG 172 (250)
T ss_pred CccccCCCcccccccCCc
Confidence 578999999999999996
No 273
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=74.92 E-value=0.8 Score=35.47 Aligned_cols=48 Identities=23% Similarity=0.544 Sum_probs=32.7
Q ss_pred cccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670 187 DGMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 261 (279)
Q Consensus 187 ~~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~ 261 (279)
.+...|..|- .|+.+||..- |.+..+++ + ......|..||.|--.||.
T Consensus 30 ~~~~~~~~~~~~~l~~aCPA~~---------------Y~~~~~g~----------l--~~~yegClECGTCRvlc~~ 79 (99)
T COG2440 30 KDPDDCQECEDKPLIKACPAGC---------------YKLIDDGK----------L--RFDYEGCLECGTCRVLCPH 79 (99)
T ss_pred CCchhhhhccchhhhhcCCHHH---------------eeECCCCc----------E--EEeecCeeeccceeEecCC
Confidence 4466788888 9999999532 22221122 1 1235679999999999998
No 274
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=74.88 E-value=1.2 Score=38.25 Aligned_cols=19 Identities=26% Similarity=0.530 Sum_probs=16.7
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||.++
T Consensus 36 d~~~Ci~Cg~Cv~aCP~~A 54 (181)
T PRK08222 36 MPSQCIACGACTCACPANA 54 (181)
T ss_pred ChhhCcchhHHHHhCCccc
Confidence 3567999999999999886
No 275
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=74.40 E-value=1.6 Score=39.24 Aligned_cols=17 Identities=35% Similarity=0.735 Sum_probs=15.7
Q ss_pred CccCchhhhhhhhhCCC
Q 023670 245 KLYRCHTILNCARACPK 261 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~ 261 (279)
+++.|+.||.|+.+||.
T Consensus 140 ~~~~CI~Cg~C~s~CP~ 156 (234)
T COG0479 140 ELSECILCGCCTAACPS 156 (234)
T ss_pred hhhhccccchhhhhCCc
Confidence 68999999999999994
No 276
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=74.10 E-value=1.7 Score=42.74 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=26.0
Q ss_pred ccCchhhh--hhhhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCHTIL--NCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~~Cg--~C~~vCP~gi~~~~~I~~lR~ 274 (279)
..+|..|+ .|...||.++|+...|..++.
T Consensus 39 ~~~c~~c~~~~C~~~CP~~~~~~~~~~~~~~ 69 (467)
T TIGR01318 39 ADRCLYCGNPYCEWKCPVHNAIPQWLQLVQE 69 (467)
T ss_pred HHhcccCCCccccccCCCCCcHHHHHHHHHC
Confidence 57899998 699999999999999998873
No 277
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=73.92 E-value=2.2 Score=38.28 Aligned_cols=17 Identities=41% Similarity=0.960 Sum_probs=15.7
Q ss_pred CccCchhhhhhhhhCCC
Q 023670 245 KLYRCHTILNCARACPK 261 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~ 261 (279)
.+..|+.||.|..+||+
T Consensus 142 ~~~~CI~CG~C~s~CP~ 158 (235)
T PRK12575 142 GLYECILCACCSTACPS 158 (235)
T ss_pred hhhhCcccccccccccC
Confidence 57899999999999996
No 278
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=73.84 E-value=1.2 Score=32.21 Aligned_cols=19 Identities=26% Similarity=0.688 Sum_probs=16.2
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+...||.||.|..+||...
T Consensus 6 Drd~Cigcg~C~~~aPdvF 24 (68)
T COG1141 6 DRDTCIGCGACLAVAPDVF 24 (68)
T ss_pred chhhccccchhhhcCCcce
Confidence 4568999999999999764
No 279
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=73.57 E-value=1.5 Score=38.64 Aligned_cols=19 Identities=37% Similarity=1.074 Sum_probs=16.4
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
.++..|+.||.|+.+||..
T Consensus 191 ~~~~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 191 NGVWRCTTCMNCSEVCPKG 209 (220)
T ss_pred CCCccCccccccccccCCC
Confidence 3567899999999999964
No 280
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=73.10 E-value=2.4 Score=38.37 Aligned_cols=20 Identities=35% Similarity=0.650 Sum_probs=17.5
Q ss_pred CccCchhhhhhhhhCCCCCC
Q 023670 245 KLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~ 264 (279)
....|+.||.|..+||+...
T Consensus 150 ~~~~CI~CG~C~saCP~~~~ 169 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVNE 169 (249)
T ss_pred hhhhccCcCcccccCCCCcc
Confidence 57899999999999997754
No 281
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=72.68 E-value=1.4 Score=40.30 Aligned_cols=20 Identities=35% Similarity=0.722 Sum_probs=17.2
Q ss_pred CccCchhhhhhhhhCCCCCC
Q 023670 245 KLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~ 264 (279)
....|+.||.|+.+||.++-
T Consensus 46 ~~~~C~~C~~C~~~Cp~~a~ 65 (295)
T TIGR02494 46 KENRCLGCGKCVEVCPAGTA 65 (295)
T ss_pred ccccCCCCchhhhhCccccc
Confidence 35689999999999999873
No 282
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=72.40 E-value=1.6 Score=41.21 Aligned_cols=19 Identities=37% Similarity=1.011 Sum_probs=16.4
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+...|+.||+|..+||+..
T Consensus 299 G~~~CvgCGrC~~~CP~~i 317 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEYI 317 (334)
T ss_pred CccccCCcCchhhhCCCCC
Confidence 4568999999999999863
No 283
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=72.31 E-value=2.1 Score=38.11 Aligned_cols=18 Identities=33% Similarity=0.787 Sum_probs=16.0
Q ss_pred CccCchhhhhhhhhCCCC
Q 023670 245 KLYRCHTILNCARACPKG 262 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~g 262 (279)
.+..|+.||.|..+||+-
T Consensus 139 ~~~~Ci~Cg~C~~~CP~~ 156 (232)
T PRK05950 139 GLYECILCACCSTSCPSF 156 (232)
T ss_pred hHHhccccccccccCCcc
Confidence 578999999999999964
No 284
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=71.64 E-value=18 Score=25.42 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=29.0
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec---cccccccCCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL---ACLTKISPSG 128 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l---AC~t~v~~g~ 128 (279)
+.+++ ++ +.||.++|...+. ++ . .++|.+||..+. -=++.+.+|.
T Consensus 8 ~~~~~--~~-~~tl~~ll~~l~~--~~----~---------~vaVavN~~iv~r~~w~~~~L~~gD 55 (66)
T PRK08053 8 QPMQC--AA-GQTVHELLEQLNQ--LQ----P---------GAALAINQQIIPREQWAQHIVQDGD 55 (66)
T ss_pred eEEEc--CC-CCCHHHHHHHcCC--CC----C---------cEEEEECCEEeChHHcCccccCCCC
Confidence 44544 45 7899999988763 21 1 289999998664 2344566653
No 285
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=71.09 E-value=2.1 Score=44.67 Aligned_cols=29 Identities=21% Similarity=0.381 Sum_probs=23.6
Q ss_pred CccCchhhhhhhhhCCCCCChHHHHHHHH
Q 023670 245 KLYRCHTILNCARACPKGLNPGKQIINIK 273 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR 273 (279)
....|+.||.|+.+||.++.+...+...+
T Consensus 402 eadrCI~CG~Cv~aCP~~l~i~~~I~~a~ 430 (781)
T PRK00941 402 LAKKCTECGWCVRVCPNELPIPEAMEAAA 430 (781)
T ss_pred hhhhCcCCCCccccCCCCcchhHHHHHHh
Confidence 35789999999999999988777665543
No 286
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=70.64 E-value=1.9 Score=40.89 Aligned_cols=18 Identities=39% Similarity=1.130 Sum_probs=15.8
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
....|+.||+|..+||+.
T Consensus 305 g~~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 305 GYHMCVGCGRCDDRCPEY 322 (344)
T ss_pred chhhCcCcCccccccCCC
Confidence 456899999999999975
No 287
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=70.58 E-value=1.9 Score=35.47 Aligned_cols=19 Identities=26% Similarity=0.847 Sum_probs=16.1
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
.+..|..||.|..+||...
T Consensus 44 ~~~~C~~Cg~C~~~CP~~i 62 (144)
T TIGR03290 44 DLWMCTTCYTCQERCPRDV 62 (144)
T ss_pred CCCcCcCcCchhhhcCCCC
Confidence 4568999999999999753
No 288
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=70.14 E-value=2 Score=38.78 Aligned_cols=19 Identities=32% Similarity=1.003 Sum_probs=16.2
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
.++..|+.||.|+.+||..
T Consensus 200 ~gl~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 200 NGVWSCTFVGYCSEVCPKH 218 (244)
T ss_pred chhhhCcCcccccccCCCC
Confidence 3567999999999999964
No 289
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=70.11 E-value=1.5 Score=39.81 Aligned_cols=18 Identities=17% Similarity=0.525 Sum_probs=16.3
Q ss_pred CccCchhhhhhhhhCCCC
Q 023670 245 KLYRCHTILNCARACPKG 262 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~g 262 (279)
.+..|+.||.|..+||+-
T Consensus 140 ~~~~CI~CG~C~s~CPv~ 157 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVV 157 (251)
T ss_pred chhhcccCCcccCcCCcc
Confidence 678999999999999955
No 290
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=69.81 E-value=1.3 Score=36.14 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.2
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|..+||.++
T Consensus 57 d~~~Ci~C~~C~~~CP~~a 75 (133)
T PRK09625 57 NNEICINCFNCWVYCPDAA 75 (133)
T ss_pred ehhHCcChhhHHHhCCHhh
Confidence 3578999999999999764
No 291
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=68.89 E-value=1.9 Score=33.72 Aligned_cols=18 Identities=28% Similarity=0.779 Sum_probs=15.3
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
+...|+.||.|+.+||..
T Consensus 79 d~~~C~~Cg~Cv~~CP~~ 96 (105)
T PRK09624 79 DYDYCKGCGICANECPTK 96 (105)
T ss_pred CchhCCCcCchhhhcCcC
Confidence 346899999999999964
No 292
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=68.79 E-value=1.8 Score=39.81 Aligned_cols=17 Identities=29% Similarity=0.911 Sum_probs=15.6
Q ss_pred CccCchhhhhhhhhCCC
Q 023670 245 KLYRCHTILNCARACPK 261 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~ 261 (279)
.+..|+.||.|..+||+
T Consensus 185 ~~~~CI~CG~C~saCPv 201 (276)
T PLN00129 185 GMYECILCACCSTSCPS 201 (276)
T ss_pred hhhhCccccccccccCC
Confidence 57899999999999995
No 293
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=68.46 E-value=1.9 Score=38.74 Aligned_cols=18 Identities=33% Similarity=0.580 Sum_probs=16.0
Q ss_pred CccCchhhhhhhhhCCCC
Q 023670 245 KLYRCHTILNCARACPKG 262 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~g 262 (279)
.+..|+.||.|..+||+-
T Consensus 147 ~~~~CI~Cg~C~saCP~~ 164 (239)
T PRK13552 147 ELDRCIECGCCVAACGTK 164 (239)
T ss_pred chhhccccchhHhhCCCC
Confidence 578999999999999953
No 294
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=68.28 E-value=1.4 Score=48.12 Aligned_cols=52 Identities=25% Similarity=0.468 Sum_probs=34.5
Q ss_pred cccccCcccCcccC--CCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhh-hCCCCC
Q 023670 187 DGMYECILCACCST--SCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCAR-ACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~--~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~-vCP~gi 263 (279)
-+...|..||.|.. .||.......+ +| + +. .+ ....|..|+.|.. +||.=+
T Consensus 626 In~~vCegCg~C~~~s~C~ai~~~~t~-~g--------------r----K~---~I----d~s~Cn~~~~C~~G~CPsfv 679 (1159)
T PRK13030 626 INEAVCEGCGDCGVQSNCLSVEPVETP-FG--------------R----KR---RI----DQSSCNKDFSCVNGFCPSFV 679 (1159)
T ss_pred EcccccCCchhhhhccCCcceeecccc-CC--------------c----cE---EE----CHHHCCCccccccCCCCCCe
Confidence 35678999999996 79987532111 01 1 00 12 3477999999999 999655
Q ss_pred C
Q 023670 264 N 264 (279)
Q Consensus 264 ~ 264 (279)
-
T Consensus 680 t 680 (1159)
T PRK13030 680 T 680 (1159)
T ss_pred E
Confidence 3
No 295
>PRK06991 ferredoxin; Provisional
Probab=68.13 E-value=1.8 Score=39.69 Aligned_cols=18 Identities=28% Similarity=0.503 Sum_probs=16.0
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||+++
T Consensus 84 ~~~CigCg~Cv~aCP~~A 101 (270)
T PRK06991 84 EQLCIGCTLCMQACPVDA 101 (270)
T ss_pred cccCCCCcHHHHhCCHhh
Confidence 478999999999999775
No 296
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=67.88 E-value=1.9 Score=40.78 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=18.8
Q ss_pred hhcccccCcccCcccCCCCCccc
Q 023670 185 KLDGMYECILCACCSTSCPSYWW 207 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~~~~ 207 (279)
...+..+||.||.|..+||...+
T Consensus 209 ~~id~~~Ci~Cg~Ci~~CP~~a~ 231 (341)
T TIGR02066 209 LEVDVEKCIYCGNCYTMCPAMPI 231 (341)
T ss_pred eeeccccCCcCCchHHhCchhhc
Confidence 45567899999999999998543
No 297
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=67.52 E-value=2.4 Score=35.73 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.4
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|.++||.++
T Consensus 111 d~~~Ci~Cg~C~~aCp~~a 129 (165)
T TIGR01944 111 DEDNCIGCTKCIQACPVDA 129 (165)
T ss_pred ECCcCCChhHHHHhCCccc
Confidence 3578999999999999774
No 298
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=66.79 E-value=2.5 Score=39.02 Aligned_cols=18 Identities=28% Similarity=0.571 Sum_probs=16.2
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|..|+.|.++||+++
T Consensus 158 ~~~C~~C~~C~~aCPt~A 175 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQA 175 (282)
T ss_pred CCCCccHHHHHHhcCccc
Confidence 468999999999999886
No 299
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=66.28 E-value=8.3 Score=37.78 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=18.1
Q ss_pred hhhcccccCcccCc--ccCCCCCcc
Q 023670 184 AKLDGMYECILCAC--CSTSCPSYW 206 (279)
Q Consensus 184 ~~~~~~~~CI~CG~--C~~~CP~~~ 206 (279)
....+.++|+.|+. |+.+||...
T Consensus 38 ~~~~~a~rc~~c~~~~C~~~CP~~~ 62 (471)
T PRK12810 38 QAKIQAARCMDCGIPFCHWGCPVHN 62 (471)
T ss_pred HHHHHHHhccCCCCCcccccCCCCC
Confidence 34456789999976 999999864
No 300
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=65.97 E-value=2.3 Score=32.48 Aligned_cols=18 Identities=28% Similarity=0.680 Sum_probs=15.8
Q ss_pred cccccCcccCcccCCCCC
Q 023670 187 DGMYECILCACCSTSCPS 204 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~ 204 (279)
.+.+.|-.||.|..+||+
T Consensus 63 idYdyCKGCGICa~vCP~ 80 (91)
T COG1144 63 IDYDYCKGCGICANVCPV 80 (91)
T ss_pred eEcccccCceechhhCCh
Confidence 356789999999999996
No 301
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=65.43 E-value=3.3 Score=40.60 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=24.7
Q ss_pred ccCchhhhh--hhhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCHTILN--CARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~~Cg~--C~~vCP~gi~~~~~I~~lR~ 274 (279)
..+|..|+. |+..||.++++...|..+++
T Consensus 43 a~rc~~c~~~~C~~~CP~~~~~~~~~~~~~~ 73 (471)
T PRK12810 43 AARCMDCGIPFCHWGCPVHNYIPEWNDLVYR 73 (471)
T ss_pred HHhccCCCCCcccccCCCCCcHHHHHHHHHC
Confidence 466777766 99999999999999998874
No 302
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=65.13 E-value=2.7 Score=39.35 Aligned_cols=17 Identities=41% Similarity=0.835 Sum_probs=15.6
Q ss_pred cCchhhhhhhhhCCCCC
Q 023670 247 YRCHTILNCARACPKGL 263 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~gi 263 (279)
..|..|+.|.++||.++
T Consensus 205 ~fC~~C~~C~~~CP~~A 221 (314)
T TIGR02486 205 KFCETCGKCADECPSGA 221 (314)
T ss_pred ccCcchhHHHhhCCccc
Confidence 47999999999999886
No 303
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=65.11 E-value=9.5 Score=37.43 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=18.6
Q ss_pred hhhcccccCcccC--cccCCCCCcc
Q 023670 184 AKLDGMYECILCA--CCSTSCPSYW 206 (279)
Q Consensus 184 ~~~~~~~~CI~CG--~C~~~CP~~~ 206 (279)
....+.++|+.|+ .|..+||...
T Consensus 34 ~~~~~~~~c~~c~~~~C~~~CP~~~ 58 (467)
T TIGR01318 34 QAQYQADRCLYCGNPYCEWKCPVHN 58 (467)
T ss_pred HHHHHHHhcccCCCccccccCCCCC
Confidence 3455678999998 6999999864
No 304
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=64.74 E-value=2.7 Score=39.66 Aligned_cols=17 Identities=29% Similarity=0.784 Sum_probs=14.8
Q ss_pred ccccCcccCcccCCCCC
Q 023670 188 GMYECILCACCSTSCPS 204 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~ 204 (279)
+...|..||.|.+.||.
T Consensus 3 ~~~~c~~Cg~C~a~cp~ 19 (332)
T COG1035 3 DAGLCTGCGTCAAVCPY 19 (332)
T ss_pred cCcccccchhhHhhCCc
Confidence 34579999999999997
No 305
>PRK12831 putative oxidoreductase; Provisional
Probab=64.68 E-value=7.7 Score=38.06 Aligned_cols=23 Identities=22% Similarity=0.657 Sum_probs=19.0
Q ss_pred hhhcccccCcccC--cccCCCCCcc
Q 023670 184 AKLDGMYECILCA--CCSTSCPSYW 206 (279)
Q Consensus 184 ~~~~~~~~CI~CG--~C~~~CP~~~ 206 (279)
+...+..+|+.|+ .|..+||...
T Consensus 34 ~~~~ea~rc~~c~~~~C~~~CP~~~ 58 (464)
T PRK12831 34 EAVKEASRCLQCKKPKCVKGCPVSI 58 (464)
T ss_pred HHHHHHHhhcCCCCCchhhhCCCCC
Confidence 4466788999998 6999999864
No 306
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=64.27 E-value=2.9 Score=39.41 Aligned_cols=18 Identities=33% Similarity=0.698 Sum_probs=15.6
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
+...|+.||.|..+||..
T Consensus 51 d~~~C~~Cg~C~~vCP~~ 68 (341)
T PRK09326 51 APNVCEGCLTCSRICPVV 68 (341)
T ss_pred CcCcCcCcCchhhhCCCC
Confidence 456899999999999974
No 307
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=64.12 E-value=2.5 Score=40.70 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=14.8
Q ss_pred CchhhhhhhhhCCCCCC
Q 023670 248 RCHTILNCARACPKGLN 264 (279)
Q Consensus 248 ~C~~Cg~C~~vCP~gi~ 264 (279)
.|+.|+.|.++||....
T Consensus 246 ~CI~C~~CidaCd~~~~ 262 (386)
T COG0348 246 ECIGCGRCIDACDDDML 262 (386)
T ss_pred ccccHhhHhhhCCHHhh
Confidence 69999999999996654
No 308
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=64.07 E-value=2.8 Score=29.49 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=14.3
Q ss_pred ccCchhhhhhhhhCCC
Q 023670 246 LYRCHTILNCARACPK 261 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~ 261 (279)
...|+.||.|+..||.
T Consensus 5 ~~~C~gcg~C~~~aP~ 20 (65)
T PF13459_consen 5 RDRCIGCGLCVELAPE 20 (65)
T ss_pred cccCcCccHHHhhCCc
Confidence 4689999999999994
No 309
>PRK12831 putative oxidoreductase; Provisional
Probab=63.72 E-value=4 Score=40.07 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=25.6
Q ss_pred ccCchhhh--hhhhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCHTIL--NCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~~Cg--~C~~vCP~gi~~~~~I~~lR~ 274 (279)
..+|..|+ -|...||.++|+.+.|..+++
T Consensus 39 a~rc~~c~~~~C~~~CP~~~~i~~~~~~~~~ 69 (464)
T PRK12831 39 ASRCLQCKKPKCVKGCPVSINIPGFISKLKE 69 (464)
T ss_pred HHhhcCCCCCchhhhCCCCCCHHHHHHHHHC
Confidence 57899998 599999999999999988773
No 310
>PRK08764 ferredoxin; Provisional
Probab=63.62 E-value=2.7 Score=34.29 Aligned_cols=17 Identities=29% Similarity=0.686 Sum_probs=15.2
Q ss_pred cCchhhhhhhhhCCCCC
Q 023670 247 YRCHTILNCARACPKGL 263 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~gi 263 (279)
..|+.|+.|+.+||.++
T Consensus 85 ~~Ci~C~~Cv~aCp~~a 101 (135)
T PRK08764 85 ADCIGCTKCIQACPVDA 101 (135)
T ss_pred ccCcCcchHHHhCChhh
Confidence 68999999999999764
No 311
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=63.58 E-value=2.1 Score=41.88 Aligned_cols=18 Identities=22% Similarity=0.569 Sum_probs=15.8
Q ss_pred CccCchhhhhhhhhCCCC
Q 023670 245 KLYRCHTILNCARACPKG 262 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~g 262 (279)
....|+.||.|..+||+-
T Consensus 291 e~~~CIrCG~C~~~CPvy 308 (432)
T TIGR00273 291 EVLACIRCGACQNECPVY 308 (432)
T ss_pred hHhhCCCCCCccccCcch
Confidence 468899999999999963
No 312
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=63.41 E-value=2.4 Score=32.98 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=16.3
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.|+.|+.+||.++
T Consensus 49 ~~~~Ci~C~~C~~~CP~~a 67 (105)
T PRK09623 49 DESKCVKCYICWKFCPEPA 67 (105)
T ss_pred CcccCccccchhhhCCHhh
Confidence 4578999999999999864
No 313
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=63.32 E-value=1.9 Score=47.01 Aligned_cols=50 Identities=24% Similarity=0.500 Sum_probs=33.7
Q ss_pred cccccCcccCcccC--CCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhh-hCCCC
Q 023670 187 DGMYECILCACCST--SCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCAR-ACPKG 262 (279)
Q Consensus 187 ~~~~~CI~CG~C~~--~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~-vCP~g 262 (279)
-+...|..||-|.. .||.......+ +| +. . .+ ....|..|+.|.. .||.=
T Consensus 654 In~~vCeGCgdC~~~snC~ai~p~et~-~g--------------rK----~---~I----dqs~Cn~d~sC~~G~CPsF 706 (1186)
T PRK13029 654 INELVCEGCGDCSVQSNCLAVQPVETE-FG--------------RK----R---KI----NQSSCNKDFSCVKGFCPSF 706 (1186)
T ss_pred EcccccCCchhhhhccCCceeeecccc-CC--------------cc----E---EE----CHhHCCCccccccCCCCCc
Confidence 35678999999985 79987532111 11 10 0 12 3467999999999 99973
No 314
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=63.22 E-value=2.5 Score=39.29 Aligned_cols=20 Identities=30% Similarity=0.760 Sum_probs=16.9
Q ss_pred hcccccCcccCcccCCCCCc
Q 023670 186 LDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~ 205 (279)
..+...|+.||.|+.+||..
T Consensus 197 ~id~~~C~~Cg~Cv~~CP~~ 216 (314)
T TIGR02912 197 VRDHSKCIGCGECVLKCPTG 216 (314)
T ss_pred EeCCCcCcCcchhhhhCCHh
Confidence 34667899999999999974
No 315
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=62.53 E-value=2 Score=46.86 Aligned_cols=52 Identities=25% Similarity=0.467 Sum_probs=34.7
Q ss_pred cccccCcccCcccC--CCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhh-hCCCCC
Q 023670 187 DGMYECILCACCST--SCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCAR-ACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~--~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~-vCP~gi 263 (279)
-+...|..||-|.. .||.......+ +| +. . .+ ....|..|+.|.. .||.-+
T Consensus 640 In~~vCegCgdC~~~s~C~ai~p~~t~-~g--------------rK----~---~I----dqs~Cn~d~sC~~G~CPsFv 693 (1165)
T PRK09193 640 INEAVCEGCGDCSVKSNCLSVEPVETE-FG--------------RK----R---RI----DQSSCNKDFSCLKGFCPSFV 693 (1165)
T ss_pred EcccccCCchhhhhccCCcceeecccc-CC--------------cc----E---EE----CHhHCCCccccccCCCCCce
Confidence 35678999999985 79987532111 11 10 0 12 3467999999999 999765
Q ss_pred C
Q 023670 264 N 264 (279)
Q Consensus 264 ~ 264 (279)
-
T Consensus 694 t 694 (1165)
T PRK09193 694 T 694 (1165)
T ss_pred e
Confidence 3
No 316
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=62.49 E-value=2.6 Score=39.71 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=15.9
Q ss_pred CccCchhhhhhhhhCCCC
Q 023670 245 KLYRCHTILNCARACPKG 262 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~g 262 (279)
.+..|+.||.|..+||+.
T Consensus 150 ~~~~Ci~CG~C~s~CP~~ 167 (329)
T PRK12577 150 QTGNCILCGACYSECNAR 167 (329)
T ss_pred HhhhCcccCcccccCCCC
Confidence 468899999999999965
No 317
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=62.48 E-value=3.5 Score=40.16 Aligned_cols=20 Identities=40% Similarity=0.923 Sum_probs=17.3
Q ss_pred hcccccCcccCcccCCCCCc
Q 023670 186 LDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~ 205 (279)
.+..+.|.+||.|..+||+.
T Consensus 354 ~~~~~~c~lcg~C~evCPv~ 373 (459)
T COG1139 354 GDLPYACSLCGACTEVCPVK 373 (459)
T ss_pred cccchhhccccCCCCcCCCC
Confidence 35578999999999999976
No 318
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=61.92 E-value=2.7 Score=36.44 Aligned_cols=19 Identities=26% Similarity=0.574 Sum_probs=16.1
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||.+.
T Consensus 112 d~~~Ci~Cg~Cv~aCp~~a 130 (191)
T PRK05113 112 DEDNCIGCTKCIQACPVDA 130 (191)
T ss_pred eCCcCCCCChhhhhCCHhh
Confidence 3578999999999999664
No 319
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=61.70 E-value=3.6 Score=31.76 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=17.2
Q ss_pred CccCchhhhhhhhhCCCCCC
Q 023670 245 KLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~ 264 (279)
....|+.||.|..+||.+..
T Consensus 59 d~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 59 DYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred cCCCCCcchhhhhhcCCCCc
Confidence 46789999999999998863
No 320
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=61.08 E-value=4.1 Score=36.46 Aligned_cols=40 Identities=33% Similarity=0.586 Sum_probs=25.3
Q ss_pred hHHHHHHHcccC---CCCCccccCCCCCCccCeeEEEECCeeecccc
Q 023670 78 MVLDALIKIKSE---IDPSLTFRRSCREGICGSCAMNIDGCNGLACL 121 (279)
Q Consensus 78 tvLdal~~~~~~---~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~ 121 (279)
.+.++|.+.|.. ..-.+.-+--|..|+||+|.|. ..++|.
T Consensus 204 ~~~~~L~~~Gv~~~~i~~~~~~~~~~~~g~c~~c~~~----~~~~~~ 246 (253)
T cd06221 204 FVAKELLKLGVPEEQIWVSLERRMKCGVGKCGHCQIG----PKYVCK 246 (253)
T ss_pred HHHHHHHHcCCCHHHEEEehhhccccCCccccCcccC----CeeEEC
Confidence 456667666531 1123444445999999999998 355664
No 321
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=60.13 E-value=3.2 Score=30.10 Aligned_cols=19 Identities=16% Similarity=0.291 Sum_probs=15.7
Q ss_pred ccCchhhhhhhhhCCCCCC
Q 023670 246 LYRCHTILNCARACPKGLN 264 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi~ 264 (279)
-+.|+.||.|..+||--.+
T Consensus 7 rd~Cigcg~C~~~aPdvF~ 25 (68)
T COG1141 7 RDTCIGCGACLAVAPDVFD 25 (68)
T ss_pred hhhccccchhhhcCCccee
Confidence 3789999999999996544
No 322
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=59.92 E-value=4.6 Score=39.35 Aligned_cols=29 Identities=28% Similarity=0.527 Sum_probs=25.2
Q ss_pred ccCchhh--hhhhhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCHTI--LNCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~~C--g~C~~vCP~gi~~~~~I~~lR~ 274 (279)
..+|..| ..|+..||.++|+.+.|..+++
T Consensus 39 ~~rc~~c~~~~c~~~cp~~~~~~~~~~~~~~ 69 (457)
T PRK11749 39 ASRCLQCKDAPCVKACPVSIDIPEFIRLIAE 69 (457)
T ss_pred HHHhhCCCCCcccccCCCcCCHHHHHHHHHC
Confidence 4678888 7899999999999999988773
No 323
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=59.51 E-value=3 Score=38.72 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=16.4
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.|+.|..+||.+.
T Consensus 245 d~~~Ci~C~~C~~~CP~~a 263 (312)
T PRK14028 245 DHSKCIMCRKCWLYCPDDA 263 (312)
T ss_pred CcccCcCcccccccCChhh
Confidence 3568999999999999764
No 324
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]
Probab=59.24 E-value=19 Score=25.96 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=24.4
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL 118 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l 118 (279)
++.++ ++|+.|.|.+.+... ...+|.+||..+.
T Consensus 12 ~e~~~-~~tv~dLL~~l~~~~---------------~~vav~vNg~iVp 44 (68)
T COG2104 12 VEIAE-GTTVADLLAQLGLNP---------------EGVAVAVNGEIVP 44 (68)
T ss_pred EEcCC-CCcHHHHHHHhCCCC---------------ceEEEEECCEEcc
Confidence 34445 689999999987322 1389999998775
No 325
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=58.76 E-value=4 Score=36.39 Aligned_cols=17 Identities=35% Similarity=0.784 Sum_probs=15.2
Q ss_pred cCchhhhhhhhhCCCCC
Q 023670 247 YRCHTILNCARACPKGL 263 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~gi 263 (279)
..|+.|+.|..+||.+.
T Consensus 148 ~~C~~C~~C~~~CP~~a 164 (234)
T TIGR02700 148 KRCKGCGICVDACPRSA 164 (234)
T ss_pred hHCcCcchHHHhCCccc
Confidence 57999999999999875
No 326
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=57.17 E-value=3.6 Score=38.49 Aligned_cols=20 Identities=30% Similarity=0.632 Sum_probs=16.8
Q ss_pred hcccccCcccCcccCCCCCc
Q 023670 186 LDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~ 205 (279)
..+.++||.||.|..+||..
T Consensus 197 ~id~~~Ci~Cg~Ci~~Cp~~ 216 (317)
T COG2221 197 KIDGSKCIGCGKCIRACPKA 216 (317)
T ss_pred EEehhhccCccHHhhhCChh
Confidence 34678999999999999943
No 327
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=57.05 E-value=9 Score=37.32 Aligned_cols=79 Identities=18% Similarity=0.324 Sum_probs=42.2
Q ss_pred hhcccccCcccC----cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccC-----ccCchhhhhh
Q 023670 185 KLDGMYECILCA----CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFK-----LYRCHTILNC 255 (279)
Q Consensus 185 ~~~~~~~CI~CG----~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~-----~~~C~~Cg~C 255 (279)
.+.+..+|+.|. .|..+||..... | .++.+ +..++-. +-++.+...+- -.-|.+...|
T Consensus 21 ~~~ea~rc~~c~~~~~~C~~~CP~~~~i------~-~~~~~---~~~g~~~---~A~~~~~~~~p~p~~~grvC~~~~~C 87 (449)
T TIGR01316 21 ALVEAQRCLNCKDATKPCIKGCPVHVPI------P-EFIAK---IQEGDFK---GAVDIIKTTSLLPAICGRVCPQERQC 87 (449)
T ss_pred HHHHHhhCcCccCCCCChhhhCCCCCCH------H-HHHHH---HHCCCHH---HHHHHHHHhCChhHHhccCCCCccch
Confidence 455678999998 799999987421 1 22222 2222211 11221211111 1456666679
Q ss_pred hhhCCCCC-----ChHHHHHHHHHHH
Q 023670 256 ARACPKGL-----NPGKQIINIKQLQ 276 (279)
Q Consensus 256 ~~vCP~gi-----~~~~~I~~lR~~~ 276 (279)
...|..+. +-.-.|..|++.+
T Consensus 88 e~~C~~~~~~~~~~~~v~i~~l~~~~ 113 (449)
T TIGR01316 88 EGQCTVGKMFKDVGKPVSIGALERFV 113 (449)
T ss_pred HhhCcCCCcCCCCCCCccHHHHHHHH
Confidence 99998653 3344566666544
No 328
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=56.32 E-value=4.8 Score=36.30 Aligned_cols=33 Identities=21% Similarity=0.393 Sum_probs=20.6
Q ss_pred HHHHHHHcccCC---CCCccccCCCCCCccCeeEEE
Q 023670 79 VLDALIKIKSEI---DPSLTFRRSCREGICGSCAMN 111 (279)
Q Consensus 79 vLdal~~~~~~~---dptl~~~~~c~~g~CG~C~v~ 111 (279)
+.+.|++.|... .-++..+-.|..|+||+|.|.
T Consensus 207 ~~~~L~~~Gv~~~~i~~~~~~~m~cg~g~c~~c~~~ 242 (263)
T PRK08221 207 TVLEFLKRGIKEENIWVSYERKMCCGVGKCGHCKID 242 (263)
T ss_pred HHHHHHHcCCCHHHEEEEecceeEccCcccCCcccC
Confidence 455555555311 123444556999999999988
No 329
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=55.74 E-value=3.1 Score=34.04 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=15.4
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
+...|+.||.|+.+||..
T Consensus 43 d~~~C~~Cg~Cv~~CP~~ 60 (132)
T TIGR02060 43 EPDMCWECYSCVKACPQG 60 (132)
T ss_pred CchhCccHHHHHHhCCcC
Confidence 356899999999999974
No 330
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=55.66 E-value=4.5 Score=27.97 Aligned_cols=18 Identities=17% Similarity=0.377 Sum_probs=11.2
Q ss_pred cCchhhhhhhhhCCCCCC
Q 023670 247 YRCHTILNCARACPKGLN 264 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~gi~ 264 (279)
..|+.||.|...+|.-.+
T Consensus 4 ~~Ci~Cg~C~~~aP~vF~ 21 (58)
T PF13370_consen 4 DKCIGCGLCVEIAPDVFD 21 (58)
T ss_dssp TT--S-SHHHHH-TTTEE
T ss_pred hhCcCCChHHHhCcHhee
Confidence 579999999999996543
No 331
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=55.66 E-value=4.9 Score=38.53 Aligned_cols=18 Identities=39% Similarity=1.001 Sum_probs=15.8
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
.++.|+.||.|..+||..
T Consensus 71 ~~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 71 HLDRCLTCRNCETTCPSG 88 (407)
T ss_pred ccccCccccchhhhCCCC
Confidence 367899999999999974
No 332
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=55.58 E-value=6.1 Score=41.22 Aligned_cols=29 Identities=31% Similarity=0.667 Sum_probs=25.4
Q ss_pred ccCchhhh--hhhhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCHTIL--NCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~~Cg--~C~~vCP~gi~~~~~I~~lR~ 274 (279)
..+|..|+ .|...||.++|+.+.|..+++
T Consensus 328 a~rC~~c~~~~C~~~Cp~~~~i~~~~~~~~~ 358 (752)
T PRK12778 328 AKRCLDCKNPGCVEGCPVGIDIPRFIKNIER 358 (752)
T ss_pred HHHhhcCCCCcccccCcCCCCHHHHHHHHHC
Confidence 46899998 599999999999999988763
No 333
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=55.21 E-value=4.9 Score=39.62 Aligned_cols=19 Identities=37% Similarity=0.789 Sum_probs=16.7
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
.+..|+.||.|..+||+-.
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~ 149 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARK 149 (486)
T ss_pred CchhcccCccccccCCCCc
Confidence 5789999999999999754
No 334
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=53.33 E-value=6.6 Score=37.40 Aligned_cols=20 Identities=30% Similarity=0.737 Sum_probs=17.0
Q ss_pred cccccCcccCcccCCCCCcc
Q 023670 187 DGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~ 206 (279)
..+..|+.||.|..+||...
T Consensus 51 ~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 51 ESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred CCCCcCcCcCccCcccCCCC
Confidence 35788999999999999753
No 335
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=53.21 E-value=11 Score=40.53 Aligned_cols=28 Identities=32% Similarity=0.662 Sum_probs=21.1
Q ss_pred ccccCCCCCCccCeeEEEE--CCee--ecccc
Q 023670 94 LTFRRSCREGICGSCAMNI--DGCN--GLACL 121 (279)
Q Consensus 94 l~~~~~c~~g~CG~C~v~i--nG~~--~lAC~ 121 (279)
|.-+..|..|+||.|+|.+ +|+. .+.|.
T Consensus 877 lE~~M~CG~G~C~~C~v~~~~~G~~~~~~vC~ 908 (944)
T PRK12779 877 LNSIMVDATGMCGACMVPVTIDGKMVRKHACI 908 (944)
T ss_pred ecccccCCCeeeCeeeeeeecCCeeeeeEEEC
Confidence 5556679999999999975 6653 56775
No 336
>PRK06944 sulfur carrier protein ThiS; Provisional
Probab=52.78 E-value=56 Score=22.50 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=26.2
Q ss_pred eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec-cc--cccccCC
Q 023670 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL-AC--LTKISPS 127 (279)
Q Consensus 71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l-AC--~t~v~~g 127 (279)
++++ +.||.++|..++. .+ .-+|.+||..+- +- .+.+.+|
T Consensus 11 ~~~~-~~tl~~ll~~l~~--~~--------------~~~v~vN~~~v~~~~~~~~~L~~g 53 (65)
T PRK06944 11 SLPD-GATVADALAAYGA--RP--------------PFAVAVNGDFVARTQHAARALAAG 53 (65)
T ss_pred ECCC-CCcHHHHHHhhCC--CC--------------CeEEEECCEEcCchhcccccCCCC
Confidence 4456 7899999998763 22 147999998652 22 4555555
No 337
>PRK07440 hypothetical protein; Provisional
Probab=52.28 E-value=57 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=27.7
Q ss_pred eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec---cccccccCC
Q 023670 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL---ACLTKISPS 127 (279)
Q Consensus 71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l---AC~t~v~~g 127 (279)
++++ +.||.+.|.+.+. ++ ...+|++||..+. --.+.+.+|
T Consensus 15 ~~~~-~~tl~~lL~~l~~--~~-------------~~vav~~N~~iv~r~~w~~~~L~~g 58 (70)
T PRK07440 15 TCSS-GTSLPDLLQQLGF--NP-------------RLVAVEYNGEILHRQFWEQTQVQPG 58 (70)
T ss_pred EcCC-CCCHHHHHHHcCC--CC-------------CeEEEEECCEEeCHHHcCceecCCC
Confidence 4446 7999999998762 22 1379999998653 344556655
No 338
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=52.01 E-value=27 Score=24.91 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=35.4
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCceEEe
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTIT 134 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~ie 134 (279)
..++++++ +.||-|++..+... -|.+. ..-+ ..+.|.|||+.+. =.+++.+| +++.|-
T Consensus 17 ~~~~~~~~-~~tv~~ll~~l~~~-~~~~~--~~~~----~~~~v~vNg~~v~-~~~~l~~g-D~v~i~ 74 (80)
T cd00754 17 EEELELPE-GATVGELLDALEAR-YPGLL--EELL----ARVRIAVNGEYVR-LDTPLKDG-DEVAII 74 (80)
T ss_pred eEEEECCC-CCcHHHHHHHHHHH-CchHH--Hhhh----hcEEEEECCeEcC-CCcccCCC-CEEEEe
Confidence 45667777 89999999988642 23220 0011 1379999999875 34556655 444443
No 339
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=51.95 E-value=4.8 Score=40.97 Aligned_cols=21 Identities=29% Similarity=0.613 Sum_probs=17.0
Q ss_pred hcccccCcccCcccCCCCCcc
Q 023670 186 LDGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~ 206 (279)
..+...|+.||.|+.+||...
T Consensus 604 ~id~~~C~GCg~C~~iCP~~a 624 (640)
T COG4231 604 RIDPSSCNGCGSCVEVCPSFA 624 (640)
T ss_pred eecccccccchhhhhcCchhh
Confidence 345567999999999999764
No 340
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=51.50 E-value=5.5 Score=38.05 Aligned_cols=19 Identities=37% Similarity=0.697 Sum_probs=16.1
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+...|+.||.|+.+||...
T Consensus 48 d~~~C~~Cg~Cv~~CP~~A 66 (374)
T TIGR02512 48 DESNCIGCGQCSLVCPVGA 66 (374)
T ss_pred CcccCcCccCHHHhCCCCh
Confidence 4578999999999999753
No 341
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=51.29 E-value=35 Score=23.61 Aligned_cols=32 Identities=41% Similarity=0.476 Sum_probs=22.7
Q ss_pred ccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeee
Q 023670 72 LKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNG 117 (279)
Q Consensus 72 ~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~ 117 (279)
+++ |.|++|++..|+. .|.-+ +-+..|||+.+
T Consensus 13 ~~~-g~T~~d~A~~I~~----~l~~~---------~~~A~Vng~~v 44 (60)
T PF02824_consen 13 LPE-GSTVLDVAYSIHS----SLAKR---------AVAAKVNGQLV 44 (60)
T ss_dssp EET-TBBHHHHHHHHSH----HHHHC---------EEEEEETTEEE
T ss_pred CCC-CCCHHHHHHHHCH----HHHhh---------eeEEEEcCEEC
Confidence 556 8999999999873 34322 25778999644
No 342
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=51.09 E-value=4.4 Score=39.08 Aligned_cols=18 Identities=28% Similarity=0.844 Sum_probs=15.6
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
+...|+.||.|+.+||..
T Consensus 328 d~~~Ci~CGaCV~aCP~~ 345 (391)
T TIGR03287 328 NTEDCFGCGYCAEICPGG 345 (391)
T ss_pred ChHhCcChHHHHhhCCcc
Confidence 457899999999999963
No 343
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=51.04 E-value=33 Score=24.21 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=34.9
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecc--ccccccCCCCceEEe
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA--CLTKISPSGSASTIT 134 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lA--C~t~v~~g~~~~~ie 134 (279)
-++...+ +.||-++|..++. ..|.+... ..|.|.|||+.+.. =.+.+.+| +++.|-
T Consensus 14 ~~~~~~~-~~tv~~ll~~l~~-~~p~~~~~--------~~~~v~vN~~~v~~~~~~~~l~~g-D~V~i~ 71 (77)
T PF02597_consen 14 EEIEVPE-GSTVRDLLEALAE-RYPELALR--------DRVAVAVNGEIVPDDGLDTPLKDG-DEVAIL 71 (77)
T ss_dssp EEEEESS-TSBHHHHHHHHCH-HTGGGHTT--------TTEEEEETTEEEGGGTTTSBEETT-EEEEEE
T ss_pred eEEecCC-CCcHHHHHHHHHh-hccccccC--------ccEEEEECCEEcCCccCCcCcCCC-CEEEEE
Confidence 3455566 8999999999874 34444411 24899999987765 23344444 444443
No 344
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=50.88 E-value=5.5 Score=38.54 Aligned_cols=17 Identities=35% Similarity=0.856 Sum_probs=15.4
Q ss_pred ccccCcccCcccCCCCC
Q 023670 188 GMYECILCACCSTSCPS 204 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~ 204 (279)
+...|+.||.|+.+||.
T Consensus 375 ~~~~C~~Cg~C~~~CP~ 391 (420)
T PRK08318 375 IEEECVGCNLCAHVCPV 391 (420)
T ss_pred chhhCcccchHHhhCCC
Confidence 45789999999999997
No 345
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=50.68 E-value=6.4 Score=37.93 Aligned_cols=17 Identities=24% Similarity=0.571 Sum_probs=15.1
Q ss_pred ccccCcccCcccCCCCC
Q 023670 188 GMYECILCACCSTSCPS 204 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~ 204 (279)
-.+.|++||.|...||.
T Consensus 65 ~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 65 LANLCHNCGACLHACQY 81 (389)
T ss_pred HHHhCcCcccccccCcC
Confidence 35679999999999997
No 346
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=50.58 E-value=5.6 Score=35.46 Aligned_cols=19 Identities=32% Similarity=0.523 Sum_probs=16.3
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.|+.|..+||.++
T Consensus 172 d~~~C~~C~~C~~aCP~~a 190 (228)
T TIGR03294 172 NQGLCMGCGTCAAACPTRA 190 (228)
T ss_pred ChhhCcChhHHHHhCCHhh
Confidence 3468999999999999764
No 347
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=50.45 E-value=8.5 Score=41.71 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=25.3
Q ss_pred ccCchhhh--hhhhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCHTIL--NCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~~Cg--~C~~vCP~gi~~~~~I~~lR~ 274 (279)
..+|..|+ .|...||.++|+.+.|..++.
T Consensus 330 a~rC~~c~~~~C~~~CP~~~dip~~~~~i~~ 360 (1006)
T PRK12775 330 AERCIQCAKPTCIAGCPVQIDIPVFIRHVVV 360 (1006)
T ss_pred HHhccCCCCccccCCCCCCCCHHHHHHHHHC
Confidence 45899997 799999999999999988763
No 348
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=49.70 E-value=7.8 Score=34.90 Aligned_cols=24 Identities=29% Similarity=0.820 Sum_probs=17.6
Q ss_pred ccccCCCCCCccCeeEEEECCeeecccc
Q 023670 94 LTFRRSCREGICGSCAMNIDGCNGLACL 121 (279)
Q Consensus 94 l~~~~~c~~g~CG~C~v~inG~~~lAC~ 121 (279)
+..+-.|..|+||.|.|. ..++|.
T Consensus 223 ~~~~m~cg~g~c~~c~~~----~~~~c~ 246 (261)
T TIGR02911 223 YERKMCCGVGKCGHCKID----DVYVCL 246 (261)
T ss_pred eccceeccCcCCCCcccC----CEEEEC
Confidence 444556999999999998 245664
No 349
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=49.28 E-value=7 Score=43.02 Aligned_cols=19 Identities=26% Similarity=0.709 Sum_probs=16.4
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
.+...|+.||.|+.+||..
T Consensus 736 i~~~~C~gCg~Cv~~CP~~ 754 (1165)
T TIGR02176 736 ISPLDCTGCGNCVDICPAK 754 (1165)
T ss_pred eccccCcCccchhhhcCCC
Confidence 3567899999999999974
No 350
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=49.16 E-value=7.2 Score=35.91 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=15.8
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|..||.|.++|+.++
T Consensus 68 ~e~C~~CG~C~~vC~f~A 85 (284)
T COG1149 68 PEKCIRCGKCAEVCRFGA 85 (284)
T ss_pred hhhccccCcHHHhCCCCe
Confidence 455999999999999886
No 351
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=49.03 E-value=6.5 Score=38.97 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.8
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||-|+..||.++
T Consensus 49 E~lCiGCGICvkkCPF~A 66 (591)
T COG1245 49 EELCIGCGICVKKCPFDA 66 (591)
T ss_pred hhhhccchhhhccCCcce
Confidence 467999999999999764
No 352
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=48.48 E-value=20 Score=26.14 Aligned_cols=57 Identities=16% Similarity=0.267 Sum_probs=34.2
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCceEE
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTI 133 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~i 133 (279)
..-++++++ +.|+-+.+..+... .|.|.-. -..+.|.+||+.+ .=.+.+.+| +++.|
T Consensus 19 ~~~~~~~~~-~~tv~~L~~~l~~~-~p~l~~~-------~~~~~vavN~~~v-~~~~~l~dg-DeVai 75 (82)
T PLN02799 19 SDMTLELPA-GSTTADCLAELVAK-FPSLEEV-------RSCCVLALNEEYT-TESAALKDG-DELAI 75 (82)
T ss_pred CeEEEECCC-CCcHHHHHHHHHHH-ChhHHHH-------hhCcEEEECCEEc-CCCcCcCCC-CEEEE
Confidence 344556666 78998888887643 3544321 1237899999875 234455554 44443
No 353
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=48.30 E-value=5.5 Score=35.47 Aligned_cols=20 Identities=25% Similarity=0.592 Sum_probs=16.5
Q ss_pred ccccCcccCcccCCCCCccc
Q 023670 188 GMYECILCACCSTSCPSYWW 207 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~ 207 (279)
+...|+.||.|+.+||+...
T Consensus 188 ~~~~C~~Cg~Cv~vCP~gAL 207 (234)
T PRK07569 188 TSETCTSCGKCVQACPTGAI 207 (234)
T ss_pred ccccccchHHHHHhCCCCcE
Confidence 34689999999999998643
No 354
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=48.20 E-value=8.8 Score=36.36 Aligned_cols=18 Identities=33% Similarity=0.765 Sum_probs=16.5
Q ss_pred cCchhhhhhhhhCCCCCC
Q 023670 247 YRCHTILNCARACPKGLN 264 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~gi~ 264 (279)
..|-.|..|.++||+|.=
T Consensus 185 ~~Cg~C~~CldaCPt~Al 202 (337)
T COG1600 185 DHCGSCTRCLDACPTGAL 202 (337)
T ss_pred ccChhhHHHHhhCCcccc
Confidence 889999999999999873
No 355
>PRK13409 putative ATPase RIL; Provisional
Probab=47.20 E-value=6.6 Score=39.90 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=15.7
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
.-.-||.||.|+.-||.-.
T Consensus 47 ~e~~c~~c~~c~~~cp~~a 65 (590)
T PRK13409 47 SEELCIGCGICVKKCPFDA 65 (590)
T ss_pred eHhhccccccccccCCcce
Confidence 3457999999999999653
No 356
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=46.87 E-value=8.1 Score=34.90 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=22.1
Q ss_pred ceEEEEEeccCCCchHHHHHHHcccCCCCCccc
Q 023670 64 ELKEFEINLKECGPMVLDALIKIKSEIDPSLTF 96 (279)
Q Consensus 64 ~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~ 96 (279)
.+-.|.+. ..|.|+-.|||++--...|+++.
T Consensus 11 ~~~~f~~~--g~~~s~~NalRRills~vp~~Ai 41 (259)
T cd07030 11 DRARFVLE--GVPPAFANAIRRAIISEVPTLAI 41 (259)
T ss_pred CEEEEEEe--CCCHHHHHHHHHHHHhcCCeeeE
Confidence 45677776 33789999999976555676664
No 357
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=46.52 E-value=14 Score=35.91 Aligned_cols=23 Identities=26% Similarity=0.749 Sum_probs=18.7
Q ss_pred hhhcccccCccc--CcccCCCCCcc
Q 023670 184 AKLDGMYECILC--ACCSTSCPSYW 206 (279)
Q Consensus 184 ~~~~~~~~CI~C--G~C~~~CP~~~ 206 (279)
..+.+..+|+.| ..|+..||...
T Consensus 34 ~~~~e~~rc~~c~~~~c~~~cp~~~ 58 (457)
T PRK11749 34 EAIEEASRCLQCKDAPCVKACPVSI 58 (457)
T ss_pred HHHHHHHHhhCCCCCcccccCCCcC
Confidence 445668899999 88999999764
No 358
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=46.41 E-value=8.6 Score=34.83 Aligned_cols=17 Identities=35% Similarity=0.985 Sum_probs=15.4
Q ss_pred cCchhhhhhhhhCCCCC
Q 023670 247 YRCHTILNCARACPKGL 263 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~gi 263 (279)
..|..|+.|..+||.++
T Consensus 169 ~~C~~C~~C~~~CP~~v 185 (263)
T PRK00783 169 EDCDECEKCVEACPRGV 185 (263)
T ss_pred ccCCchHHHHHhCCccc
Confidence 57999999999999875
No 359
>PRK05863 sulfur carrier protein ThiS; Provisional
Probab=46.41 E-value=62 Score=22.63 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=27.4
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeee--ccccccccCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNG--LACLTKISPS 127 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~--lAC~t~v~~g 127 (279)
+.+++ ++ +.||.++|.+.+. ++ ...+|++||..+ -.=.+.+.+|
T Consensus 8 ~~~~~--~~-~~tl~~ll~~l~~--~~-------------~~vav~~N~~iv~r~~~~~~L~~g 53 (65)
T PRK05863 8 EQVEV--DE-QTTVAALLDSLGF--PE-------------KGIAVAVDWSVLPRSDWATKLRDG 53 (65)
T ss_pred EEEEc--CC-CCcHHHHHHHcCC--CC-------------CcEEEEECCcCcChhHhhhhcCCC
Confidence 34444 45 7899999999763 21 137999999733 2222346665
No 360
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=46.28 E-value=30 Score=34.14 Aligned_cols=23 Identities=22% Similarity=0.551 Sum_probs=18.5
Q ss_pred hhhcccccCcccCc--ccC--CCCCcc
Q 023670 184 AKLDGMYECILCAC--CST--SCPSYW 206 (279)
Q Consensus 184 ~~~~~~~~CI~CG~--C~~--~CP~~~ 206 (279)
....+.++|+.|+. |.. +||...
T Consensus 36 ~~~~~~~rc~~c~~~~C~~~~~CP~~~ 62 (485)
T TIGR01317 36 SAKYQAARCMDCGTPFCHNDSGCPLNN 62 (485)
T ss_pred HHHHHHHhccCCCCCCCCCCCCCCCCC
Confidence 34567789999976 999 999864
No 361
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=45.62 E-value=8 Score=41.88 Aligned_cols=21 Identities=29% Similarity=0.635 Sum_probs=17.9
Q ss_pred CccCchhh----hhhhhhCCCCCCh
Q 023670 245 KLYRCHTI----LNCARACPKGLNP 265 (279)
Q Consensus 245 ~~~~C~~C----g~C~~vCP~gi~~ 265 (279)
...+|..| |.|+.+||.+++.
T Consensus 884 ~~~rC~~C~~~C~~C~~vCP~~A~~ 908 (1019)
T PRK09853 884 EAARCLECNYVCEKCVDVCPNRANV 908 (1019)
T ss_pred cccccCCcccccchhhhhCCccccc
Confidence 45699999 9999999998843
No 362
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=45.00 E-value=9.7 Score=36.36 Aligned_cols=19 Identities=32% Similarity=0.772 Sum_probs=16.7
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
.++.|..||.|..+||...
T Consensus 50 ~~~~C~~C~~C~~~CP~~i 68 (397)
T TIGR03379 50 ALKYCTNCKRCEVACPSDV 68 (397)
T ss_pred ccccCcCcCccchhcCCCC
Confidence 4789999999999999854
No 363
>PRK13795 hypothetical protein; Provisional
Probab=44.76 E-value=9.3 Score=39.28 Aligned_cols=19 Identities=32% Similarity=0.667 Sum_probs=16.5
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|..||.|..+||.++
T Consensus 579 ~~~~C~~Cg~C~~~CP~~a 597 (636)
T PRK13795 579 RAAECVGCGVCVGACPTGA 597 (636)
T ss_pred ccccCCCHhHHHHhCCccc
Confidence 3568999999999999874
No 364
>PRK06488 sulfur carrier protein ThiS; Validated
Probab=43.90 E-value=93 Score=21.54 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=28.4
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecc---ccccccCCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA---CLTKISPSG 128 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lA---C~t~v~~g~ 128 (279)
+.+++ + ..||.+.|.+.+. .+ ...+|.+||..+.- -.+++.+|.
T Consensus 8 ~~~~~---~-~~tl~~Ll~~l~~--~~-------------~~vavavN~~iv~~~~~~~~~L~dgD 54 (65)
T PRK06488 8 ETLQT---E-ATTLALLLAELDY--EG-------------NWLATAVNGELVHKEARAQFVLHEGD 54 (65)
T ss_pred eEEEc---C-cCcHHHHHHHcCC--CC-------------CeEEEEECCEEcCHHHcCccccCCCC
Confidence 45555 3 4689999988752 21 12689999987642 356677763
No 365
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=43.42 E-value=10 Score=40.11 Aligned_cols=19 Identities=26% Similarity=0.735 Sum_probs=16.4
Q ss_pred cccCcccCcccCCCCCccc
Q 023670 189 MYECILCACCSTSCPSYWW 207 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~ 207 (279)
...|+.||.|+.+||+...
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL 221 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGAL 221 (819)
T ss_pred cccccccCcHHHhCCCCcc
Confidence 4689999999999998654
No 366
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=43.13 E-value=57 Score=24.84 Aligned_cols=64 Identities=8% Similarity=-0.122 Sum_probs=36.7
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEECCeeec---cccccccCCCCceEEee
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNIDGCNGL---ACLTKISPSGSASTITP 135 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~inG~~~l---AC~t~v~~g~~~~~iep 135 (279)
+++.++ +.||-|+|..+...+.+ +--+--+ ....-..=.|.|||+.+. .=.|++++| +++.|-|
T Consensus 22 ~~~~~~-~~tV~dll~~L~~~~~~-~~~~lf~~~g~lr~~i~VlvN~~di~~l~g~~t~L~dg-D~v~i~P 89 (94)
T cd01764 22 VLDGEK-PVTVGDLLDYVASNLLE-ERPDLFIEGGSVRPGIIVLINDTDWELLGEEDYILEDG-DHVVFIS 89 (94)
T ss_pred eccCCC-CCcHHHHHHHHHHhCch-hhhhhEecCCcccCCEEEEECCccccccCCcccCCCCc-CEEEEEC
Confidence 344445 78999999998654422 1110001 112333458999998753 456788876 4555554
No 367
>PRK13409 putative ATPase RIL; Provisional
Probab=42.81 E-value=8.8 Score=39.04 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=15.7
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||-|+..||.++
T Consensus 48 e~~c~~c~~c~~~cp~~a 65 (590)
T PRK13409 48 EELCIGCGICVKKCPFDA 65 (590)
T ss_pred HhhccccccccccCCcce
Confidence 467999999999999774
No 368
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=42.62 E-value=9.3 Score=37.92 Aligned_cols=18 Identities=33% Similarity=0.650 Sum_probs=15.1
Q ss_pred cccCcccCcccCCCCCcc
Q 023670 189 MYECILCACCSTSCPSYW 206 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~ 206 (279)
-..||.||.|+.-||.-.
T Consensus 49 E~lCiGCGICvkkCPF~A 66 (591)
T COG1245 49 EELCIGCGICVKKCPFDA 66 (591)
T ss_pred hhhhccchhhhccCCcce
Confidence 356999999999999653
No 369
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=40.58 E-value=1.1e+02 Score=22.65 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=38.5
Q ss_pred eEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCceEEeeCC
Q 023670 65 LKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITPLP 137 (279)
Q Consensus 65 ~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~iepl~ 137 (279)
...+.++.++ +.||-|++..+|.-+. . .=.|.|||+.+-- ...+.+| +.+.|.|..
T Consensus 22 ~~~~~~~~~~-~~tvkd~IEsLGVP~t-E-------------V~~i~vNG~~v~~-~~~~~~G-d~v~V~P~~ 77 (81)
T PF14451_consen 22 GGPFTHPFDG-GATVKDVIESLGVPHT-E-------------VGLILVNGRPVDF-DYRLKDG-DRVAVYPVF 77 (81)
T ss_pred CCceEEecCC-CCcHHHHHHHcCCChH-H-------------eEEEEECCEECCC-cccCCCC-CEEEEEecc
Confidence 4577788888 8999999999984211 1 1378899997632 3445544 677787754
No 370
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=40.42 E-value=8.9 Score=37.23 Aligned_cols=22 Identities=32% Similarity=0.738 Sum_probs=18.6
Q ss_pred CccCchhhhhhhhhCCCCCChH
Q 023670 245 KLYRCHTILNCARACPKGLNPG 266 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~~~ 266 (279)
....|+.||.|..+||+.+.+.
T Consensus 270 d~~~C~~Cm~Ci~~~p~a~~~g 291 (402)
T TIGR02064 270 DNRECVRCMHCINKMPKALHPG 291 (402)
T ss_pred cchhcCcCccccccCcccccCC
Confidence 3578999999999999887654
No 371
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=40.14 E-value=1.1e+02 Score=22.87 Aligned_cols=44 Identities=9% Similarity=0.108 Sum_probs=28.7
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec---cccccccCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL---ACLTKISPS 127 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l---AC~t~v~~g 127 (279)
+.++++ + +.||.++|...+. ++ ...+|++||..+. =-++.+.+|
T Consensus 26 ~~~~~~--~-~~tl~~LL~~l~~--~~-------------~~vAVevNg~iVpr~~w~~t~L~eg 72 (84)
T PRK06083 26 QSIQVD--I-SSSLAQIIAQLSL--PE-------------LGCVFAINNQVVPRSEWQSTVLSSG 72 (84)
T ss_pred eEEEcC--C-CCcHHHHHHHcCC--CC-------------ceEEEEECCEEeCHHHcCcccCCCC
Confidence 456554 5 7899999998752 22 1379999998653 344555554
No 372
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=39.85 E-value=12 Score=35.02 Aligned_cols=19 Identities=26% Similarity=0.553 Sum_probs=17.0
Q ss_pred ccCchhhhhhhhhCCCCCC
Q 023670 246 LYRCHTILNCARACPKGLN 264 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi~ 264 (279)
...|..||.|+..||.|+-
T Consensus 192 e~kc~~c~~cv~~cp~~Ai 210 (354)
T COG2768 192 EEKCYDCGLCVKICPVGAI 210 (354)
T ss_pred eecccccchhhhhCCCcce
Confidence 4789999999999999874
No 373
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=39.57 E-value=15 Score=36.29 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=25.3
Q ss_pred ccCchhhhh--hhh--hCCCCCChHHHHHHHH
Q 023670 246 LYRCHTILN--CAR--ACPKGLNPGKQIINIK 273 (279)
Q Consensus 246 ~~~C~~Cg~--C~~--vCP~gi~~~~~I~~lR 273 (279)
..+|+.|.. |.. .||.++++...|..++
T Consensus 41 ~~rc~~c~~~~C~~~~~CP~~~~i~~~~~~~~ 72 (485)
T TIGR01317 41 AARCMDCGTPFCHNDSGCPLNNLIPEFNDLVF 72 (485)
T ss_pred HHhccCCCCCCCCCCCCCCCCCcHHHHHHHHH
Confidence 578999987 999 9999999999998776
No 374
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=39.51 E-value=14 Score=39.78 Aligned_cols=29 Identities=14% Similarity=0.301 Sum_probs=25.5
Q ss_pred ccCchhhhh--h------------hhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCHTILN--C------------ARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~~Cg~--C------------~~vCP~gi~~~~~I~~lR~ 274 (279)
..+|..||. | +..||.++++.+.|..+++
T Consensus 187 a~RC~~C~~p~C~~~~~~~~~~~~~~~CP~~~~Ip~~i~~i~~ 229 (944)
T PRK12779 187 VMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHIPEMLDLLGN 229 (944)
T ss_pred HHHhcCCCCCCCCCCcccccccCcCCCCcCCCcHHHHHHHHHC
Confidence 578999998 9 5799999999999988774
No 375
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=39.17 E-value=9.7 Score=36.64 Aligned_cols=16 Identities=38% Similarity=0.891 Sum_probs=14.4
Q ss_pred cCcccCcccCCCCCcc
Q 023670 191 ECILCACCSTSCPSYW 206 (279)
Q Consensus 191 ~CI~CG~C~~~CP~~~ 206 (279)
.||.|+.|..+|+...
T Consensus 246 ~CI~C~~CidaCd~~~ 261 (386)
T COG0348 246 ECIGCGRCIDACDDDM 261 (386)
T ss_pred ccccHhhHhhhCCHHh
Confidence 6999999999999764
No 376
>PRK13669 hypothetical protein; Provisional
Probab=37.63 E-value=17 Score=27.10 Aligned_cols=28 Identities=32% Similarity=0.664 Sum_probs=21.4
Q ss_pred CCCCcc-ccCCCCCCccCeeEE----EECCeeec
Q 023670 90 IDPSLT-FRRSCREGICGSCAM----NIDGCNGL 118 (279)
Q Consensus 90 ~dptl~-~~~~c~~g~CG~C~v----~inG~~~l 118 (279)
.||.+. ...+|- +.||.|.. .|||+.+.
T Consensus 25 ~dP~~dVie~gCl-s~CG~C~~~~FAlVng~~V~ 57 (78)
T PRK13669 25 KDPNLDVLEYGCL-GYCGICSEGLFALVNGEVVE 57 (78)
T ss_pred hCCCceEEEcchh-hhCcCcccCceEEECCeEee
Confidence 478888 566784 68999986 59998774
No 377
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=37.37 E-value=15 Score=35.76 Aligned_cols=20 Identities=25% Similarity=0.511 Sum_probs=16.8
Q ss_pred hcccccCcccCcccCCCCCc
Q 023670 186 LDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~ 205 (279)
..+..+|+.||.|.++||..
T Consensus 268 ~id~~~C~~Cm~Ci~~~p~a 287 (402)
T TIGR02064 268 SIDNRECVRCMHCINKMPKA 287 (402)
T ss_pred EEcchhcCcCccccccCccc
Confidence 34567899999999999974
No 378
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=36.61 E-value=12 Score=37.69 Aligned_cols=19 Identities=26% Similarity=0.644 Sum_probs=14.8
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
.+..+|+.||.|..+||..
T Consensus 538 i~~~~C~~Cg~C~~~CP~~ 556 (564)
T PRK12771 538 FDYDKCTGCHICADVCPCG 556 (564)
T ss_pred EecccCcChhHHHhhcCcC
Confidence 3456899999999999953
No 379
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=35.93 E-value=25 Score=38.07 Aligned_cols=47 Identities=30% Similarity=0.641 Sum_probs=32.9
Q ss_pred CchHHHHHHHccc----CCCCCccccCC---CC-CCccCeeEEEECCee--eccccc
Q 023670 76 GPMVLDALIKIKS----EIDPSLTFRRS---CR-EGICGSCAMNIDGCN--GLACLT 122 (279)
Q Consensus 76 g~tvLdal~~~~~----~~dptl~~~~~---c~-~g~CG~C~v~inG~~--~lAC~t 122 (279)
...++.++..+.. ...+.+.--.+ |. .|+||.|.+.++|+. |+||..
T Consensus 943 s~~mm~~~~~~~~~~~~~~~~~i~svns~M~c~m~giC~qC~~~~~G~~k~vfaC~~ 999 (1028)
T PRK06567 943 SPEIIEELQSLKNEIFGENTEIIVSVNSSMQCMMKGICGQCIQKVKGEQKYIFACSQ 999 (1028)
T ss_pred CHHHHHHHHHHHhhhccCCCcEEEecCcHHHHHhhhhhhhheEEecCeeEEEEEecC
Confidence 3567777777652 12344444333 98 799999999999964 599988
No 380
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=35.51 E-value=91 Score=22.47 Aligned_cols=56 Identities=13% Similarity=0.152 Sum_probs=33.3
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCceEEe
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTIT 134 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~ie 134 (279)
++++++.+.||-+.+..+... .|.+.- .+ +.+.|.|||+.+.. .+++++| +++.|-
T Consensus 19 ~~~~~~~~~tv~~L~~~L~~~-~p~l~~---~~----~~~~v~vn~~~v~~-~~~l~dg-Devai~ 74 (80)
T TIGR01682 19 TLELPDESTTVGELKEHLAKE-GPELAA---SR----GQVMVAVNEEYVTD-DALLNEG-DEVAFI 74 (80)
T ss_pred EEECCCCCcCHHHHHHHHHHh-Cchhhh---hc----cceEEEECCEEcCC-CcCcCCC-CEEEEe
Confidence 345544248888888887643 343311 11 24789999997654 6777765 444443
No 381
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=34.33 E-value=14 Score=40.15 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=16.0
Q ss_pred ccCchh----hhhhhhhCCCCC
Q 023670 246 LYRCHT----ILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~----Cg~C~~vCP~gi 263 (279)
..+|.. ||.|+.+||.++
T Consensus 880 ~~rC~~c~~~Cg~Cv~vCP~~A 901 (1012)
T TIGR03315 880 SQRCLECSYVCEKCVDVCPNRA 901 (1012)
T ss_pred cccccCCCCCCCChhhhCChhh
Confidence 369996 999999999995
No 382
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=33.42 E-value=12 Score=38.02 Aligned_cols=14 Identities=36% Similarity=1.018 Sum_probs=13.2
Q ss_pred cCcccCcccCCCCC
Q 023670 191 ECILCACCSTSCPS 204 (279)
Q Consensus 191 ~CI~CG~C~~~CP~ 204 (279)
.|+.||.|+.+||.
T Consensus 579 ~C~~Cg~C~~~CP~ 592 (595)
T TIGR03336 579 LCTGCGVCAQICPF 592 (595)
T ss_pred CCcCHHHHHhhCcc
Confidence 69999999999995
No 383
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=33.33 E-value=15 Score=34.14 Aligned_cols=16 Identities=31% Similarity=0.563 Sum_probs=14.1
Q ss_pred ccCchhhhhhhhhCCC
Q 023670 246 LYRCHTILNCARACPK 261 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~ 261 (279)
..+|+.||+|+++|-.
T Consensus 211 ~nKCIlCgRCVRaC~E 226 (297)
T PTZ00305 211 LNRCIHCTRCVRFLNE 226 (297)
T ss_pred CCcCcCccHHHHHHHH
Confidence 5799999999999963
No 384
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=32.78 E-value=15 Score=34.53 Aligned_cols=21 Identities=33% Similarity=0.958 Sum_probs=17.8
Q ss_pred hcccccCcccCcccCCCCCcc
Q 023670 186 LDGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~ 206 (279)
...+..|..|+.|...||...
T Consensus 54 ~~~~~~C~~C~~C~~~CP~~i 74 (388)
T COG0247 54 YEALDTCLACGACATACPSGI 74 (388)
T ss_pred HHHHHhCcCccchHhhCCCCC
Confidence 345788999999999999864
No 385
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=32.17 E-value=17 Score=28.21 Aligned_cols=20 Identities=25% Similarity=0.645 Sum_probs=16.8
Q ss_pred hhcccccCcccCcccCCCCC
Q 023670 185 KLDGMYECILCACCSTSCPS 204 (279)
Q Consensus 185 ~~~~~~~CI~CG~C~~~CP~ 204 (279)
...+...|..||.|.-.||.
T Consensus 60 l~~~yegClECGTCRvlc~~ 79 (99)
T COG2440 60 LRFDYEGCLECGTCRVLCPH 79 (99)
T ss_pred EEEeecCeeeccceeEecCC
Confidence 34566789999999999996
No 386
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=31.34 E-value=14 Score=35.75 Aligned_cols=18 Identities=28% Similarity=0.706 Sum_probs=15.2
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
+...|+.|+.|+.+||..
T Consensus 37 ~~~~C~~C~~C~~~CP~~ 54 (411)
T TIGR03224 37 KADVCNGCMACVSPCPTG 54 (411)
T ss_pred CcccCcCHHHHHhhcCcc
Confidence 345799999999999964
No 387
>PRK07696 sulfur carrier protein ThiS; Provisional
Probab=30.05 E-value=1.1e+02 Score=21.60 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=22.7
Q ss_pred EEEEeccCCC-chHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeee
Q 023670 67 EFEINLKECG-PMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNG 117 (279)
Q Consensus 67 ~~~v~~~~~g-~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~ 117 (279)
.++++ + + .||.|+|...+. +| ...+|++||..+
T Consensus 9 ~~~~~--~-~~~tv~~lL~~l~~--~~-------------~~vav~vN~~iv 42 (67)
T PRK07696 9 QIEVP--E-SVKTVAELLTHLEL--DN-------------KIVVVERNKDIL 42 (67)
T ss_pred EEEcC--C-CcccHHHHHHHcCC--CC-------------CeEEEEECCEEe
Confidence 44443 4 5 589999998763 22 137999999865
No 388
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=29.28 E-value=19 Score=37.71 Aligned_cols=16 Identities=25% Similarity=0.532 Sum_probs=14.1
Q ss_pred CccCchhhhhhhhhCC
Q 023670 245 KLYRCHTILNCARACP 260 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP 260 (279)
...+|+.||+|+++|=
T Consensus 142 d~~rCi~C~rCvr~c~ 157 (776)
T PRK09129 142 EMTRCIHCTRCVRFGQ 157 (776)
T ss_pred cccccccCcHHHHHHH
Confidence 4579999999999995
No 389
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=28.23 E-value=24 Score=33.92 Aligned_cols=17 Identities=24% Similarity=0.522 Sum_probs=15.2
Q ss_pred cccCcccCcccCCCCCc
Q 023670 189 MYECILCACCSTSCPSY 205 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~ 205 (279)
.+.|-+||.|...||..
T Consensus 47 a~lChnC~~C~~~CPy~ 63 (372)
T TIGR02484 47 AHLCHDCQSCWHDCQYA 63 (372)
T ss_pred HHHCcCcccccccCcCC
Confidence 67899999999999963
No 390
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=26.43 E-value=23 Score=35.98 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.9
Q ss_pred CccCchhhhhhhhhCC
Q 023670 245 KLYRCHTILNCARACP 260 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP 260 (279)
...+|+.||+|+++|=
T Consensus 140 d~~rCI~C~rCvr~c~ 155 (603)
T TIGR01973 140 EMTRCIHCTRCVRFAN 155 (603)
T ss_pred cCCcCccccHHHHHHH
Confidence 4579999999999993
No 391
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=25.86 E-value=23 Score=31.56 Aligned_cols=17 Identities=35% Similarity=0.935 Sum_probs=16.1
Q ss_pred CccCchhhhhhhhhCCC
Q 023670 245 KLYRCHTILNCARACPK 261 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~ 261 (279)
|+|.|+.|.-|...||.
T Consensus 190 GlYECILCACCsTSCPS 206 (288)
T KOG3049|consen 190 GLYECILCACCSTSCPS 206 (288)
T ss_pred cHHHHHHHHHhcCCCcc
Confidence 89999999999999995
No 392
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=23.59 E-value=28 Score=36.91 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=14.2
Q ss_pred CccCchhhhhhhhhCC
Q 023670 245 KLYRCHTILNCARACP 260 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP 260 (279)
...+|+.|++|+++|-
T Consensus 147 d~~rCi~C~rCVr~c~ 162 (847)
T PRK08166 147 EMNRCIACYRCVRYYK 162 (847)
T ss_pred cCCcCccccHHHHHHH
Confidence 4579999999999995
No 393
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=23.36 E-value=51 Score=32.06 Aligned_cols=29 Identities=21% Similarity=0.510 Sum_probs=23.2
Q ss_pred ccCch-hhhhhhhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCH-TILNCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~-~Cg~C~~vCP~gi~~~~~I~~lR~ 274 (279)
-..|. .---|...||.++|+.+.|..++.
T Consensus 28 c~~c~~~~~~C~~~CP~~~~i~~~~~~~~~ 57 (449)
T TIGR01316 28 CLNCKDATKPCIKGCPVHVPIPEFIAKIQE 57 (449)
T ss_pred CcCccCCCCChhhhCCCCCCHHHHHHHHHC
Confidence 45574 356788999999999999998873
No 394
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=22.19 E-value=2.2e+02 Score=26.89 Aligned_cols=44 Identities=7% Similarity=-0.047 Sum_probs=29.3
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec---cccccccCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL---ACLTKISPS 127 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l---AC~t~v~~g 127 (279)
+.|++ ++ +.||.|.|.+.+.... ..+|++||+.+. =-.+.+.+|
T Consensus 8 k~~el--~e-~~TL~dLL~~L~i~~~---------------~VAVeVNgeIVpr~~w~~t~LkeG 54 (326)
T PRK11840 8 EPRQV--PA-GLTIAALLAELGLAPK---------------KVAVERNLEIVPRSEYGQVALEEG 54 (326)
T ss_pred EEEec--CC-CCcHHHHHHHcCCCCC---------------eEEEEECCEECCHHHcCccccCCC
Confidence 34444 45 7899999998863211 279999998664 245566665
No 395
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function.; PDB: 2HJ1_B.
Probab=20.83 E-value=2.3e+02 Score=21.34 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=16.9
Q ss_pred EEEEEeccCCCchHHHHHHHccc
Q 023670 66 KEFEINLKECGPMVLDALIKIKS 88 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~ 88 (279)
..+.+++++ |+|+.+|+..-|.
T Consensus 14 ~~~~l~vp~-GtTv~~Ai~~Sgi 35 (84)
T PF03658_consen 14 VILTLEVPE-GTTVAQAIEASGI 35 (84)
T ss_dssp EEEEEEEET-T-BHHHHHHHHTH
T ss_pred EEEEEECCC-cCcHHHHHHHcCc
Confidence 456677778 9999999999874
No 396
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=20.68 E-value=51 Score=24.47 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=24.1
Q ss_pred hHHHHHHHcccCCCCCccc-cCCCCCCccCeeEE----EECCeeecc
Q 023670 78 MVLDALIKIKSEIDPSLTF-RRSCREGICGSCAM----NIDGCNGLA 119 (279)
Q Consensus 78 tvLdal~~~~~~~dptl~~-~~~c~~g~CG~C~v----~inG~~~lA 119 (279)
.+++.|.+ +|.+.. ..+|- +.||.|.. .|||+.+.|
T Consensus 18 ~~~~~Le~-----~p~~~Vie~gCl-~~Cg~C~~~pFAlVnG~~V~A 58 (78)
T PF07293_consen 18 QVYEKLEK-----DPDIDVIEYGCL-SYCGPCAKKPFALVNGEIVAA 58 (78)
T ss_pred HHHHHHhc-----CCCccEEEcChh-hhCcCCCCCccEEECCEEEec
Confidence 35666542 577765 45674 68999986 599987743
No 397
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=20.64 E-value=47 Score=28.85 Aligned_cols=18 Identities=28% Similarity=0.707 Sum_probs=15.1
Q ss_pred cccCcccCcccCCCCCcc
Q 023670 189 MYECILCACCSTSCPSYW 206 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~ 206 (279)
.+.|..|+.|+..||+.-
T Consensus 144 ~dlCTGC~lCva~CPtdc 161 (198)
T COG2878 144 ADLCTGCDLCVAPCPTDC 161 (198)
T ss_pred HHHhcCCCcccCCCCCCc
Confidence 346999999999999753
No 398
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=20.62 E-value=38 Score=33.59 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=14.5
Q ss_pred ccCcccCcccCCCCCcc
Q 023670 190 YECILCACCSTSCPSYW 206 (279)
Q Consensus 190 ~~CI~CG~C~~~CP~~~ 206 (279)
..||.||.|+.-||...
T Consensus 50 ~lCigcgicvkkcpf~a 66 (592)
T KOG0063|consen 50 ELCIGCGICVKKCPFEA 66 (592)
T ss_pred hhhccccceeeccCcce
Confidence 35999999999999653
Done!