Query 023670
Match_columns 279
No_of_seqs 288 out of 2168
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 10:49:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023670.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023670hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr8_B Iron-sulfur subunit of 100.0 6.5E-65 2.2E-69 462.4 20.1 238 41-278 29-268 (282)
2 2h88_B Succinate dehydrogenase 100.0 4.1E-57 1.4E-61 406.1 18.9 237 43-279 7-245 (252)
3 2bs2_B Quinol-fumarate reducta 100.0 1.1E-54 3.7E-59 387.4 17.4 232 46-279 3-238 (241)
4 2wdq_B Succinate dehydrogenase 100.0 2.2E-52 7.4E-57 371.8 18.6 230 47-278 2-235 (238)
5 1kf6_B Fumarate reductase iron 100.0 4.5E-51 1.5E-55 364.3 17.2 228 47-278 5-233 (243)
6 3kwl_A Uncharacterized protein 100.0 3.9E-43 1.3E-47 343.7 15.8 194 44-279 21-222 (514)
7 1rm6_C 4-hydroxybenzoyl-COA re 99.8 1.7E-20 5.7E-25 157.4 9.6 134 66-259 12-147 (161)
8 1t3q_A Quinoline 2-oxidoreduct 99.8 8.6E-19 2.9E-23 148.0 10.4 134 66-260 19-155 (168)
9 3i9v_3 NADH-quinone oxidoreduc 99.8 2.1E-19 7.3E-24 183.7 4.6 171 70-263 11-234 (783)
10 3c8y_A Iron hydrogenase 1; dit 99.7 4.1E-19 1.4E-23 175.9 -5.0 186 70-273 11-219 (574)
11 1ffv_A CUTS, iron-sulfur prote 99.6 8.3E-15 2.8E-19 122.8 10.1 68 66-138 13-82 (163)
12 1n62_A Carbon monoxide dehydro 99.6 1.5E-14 5.1E-19 121.6 10.7 133 66-257 13-147 (166)
13 3hrd_D Nicotinate dehydrogenas 99.3 1.4E-12 4.6E-17 108.9 4.6 85 66-155 13-102 (160)
14 2w3s_A Xanthine dehydrogenase; 99.0 1.3E-10 4.4E-15 112.2 4.5 84 66-155 10-104 (462)
15 1vlb_A Aldehyde oxidoreductase 99.0 2.9E-10 9.8E-15 117.8 4.5 86 66-156 11-102 (907)
16 3nvw_A Xanthine dehydrogenase/ 98.9 3.3E-10 1.1E-14 94.6 3.8 82 69-155 16-113 (164)
17 1dgj_A Aldehyde oxidoreductase 98.9 8.2E-10 2.8E-14 114.4 4.0 86 66-156 11-102 (907)
18 3cf4_A Acetyl-COA decarboxylas 98.6 4.9E-09 1.7E-13 107.2 1.1 74 186-278 411-484 (807)
19 1frr_A Ferredoxin I; electron 98.6 6.2E-08 2.1E-12 73.2 6.1 57 68-134 13-87 (95)
20 1frd_A Heterocyst [2Fe-2S] fer 98.6 8.8E-08 3E-12 72.9 6.2 57 68-134 16-90 (98)
21 1jq4_A Methane monooxygenase c 98.5 2.1E-07 7.2E-12 70.8 6.9 54 66-126 15-88 (98)
22 1awd_A Ferredoxin; electron tr 98.5 1.8E-07 6.1E-12 70.7 6.3 58 67-134 11-86 (94)
23 1a70_A Ferredoxin; iron-sulfur 98.5 1.9E-07 6.6E-12 71.0 6.1 57 68-134 14-88 (97)
24 1iue_A Ferredoxin; electron tr 98.5 2E-07 6.8E-12 71.1 6.0 57 68-134 14-88 (98)
25 1czp_A Ferredoxin I; [2Fe-2S] 98.4 3.3E-07 1.1E-11 69.8 6.3 57 68-134 16-90 (98)
26 1wri_A Ferredoxin II, ferredox 98.3 8.4E-07 2.9E-11 66.9 6.0 57 67-134 12-86 (93)
27 2bt6_A Adrenodoxin 1; rutheniu 98.2 2.6E-06 9E-11 65.8 6.8 56 45-113 4-60 (108)
28 1l5p_A Ferredoxin; [2Fe-2S] cl 98.2 1.9E-06 6.7E-11 64.9 5.7 54 66-125 10-83 (93)
29 2wlb_A ETP1-FD, electron trans 98.2 3.6E-06 1.2E-10 64.5 6.8 41 67-114 15-56 (103)
30 2y5c_A Adrenodoxin-like protei 98.1 6.7E-06 2.3E-10 63.7 6.7 41 66-113 16-57 (109)
31 3i9v_9 NADH-quinone oxidoreduc 98.0 6E-07 2.1E-11 74.9 -0.1 107 140-263 5-112 (182)
32 3lxf_A Ferredoxin; iron, iron- 98.0 1.5E-05 5.1E-10 61.3 7.3 43 66-114 11-54 (104)
33 1doi_A 2Fe-2S ferredoxin; halo 98.0 1E-05 3.4E-10 64.8 6.3 39 69-114 39-78 (128)
34 3ah7_A [2Fe-2S]ferredoxin; [2F 98.0 9.2E-06 3.1E-10 63.2 5.6 39 69-114 18-58 (113)
35 1xlq_A Putidaredoxin, PDX; [2F 98.0 1.2E-05 4E-10 61.9 6.0 41 67-113 12-53 (106)
36 3unc_A Xanthine dehydrogenase/ 98.0 4.2E-06 1.4E-10 89.8 4.5 85 66-155 13-114 (1332)
37 1i7h_A Ferredoxin; 2Fe-2S,elec 97.9 1E-05 3.4E-10 62.9 5.5 38 69-113 18-56 (111)
38 1krh_A Benzoate 1,2-dioxygenas 97.9 1.5E-05 5.2E-10 72.9 7.4 53 67-126 15-89 (338)
39 1b9r_A Protein (terpredoxin); 97.9 7.8E-06 2.7E-10 62.8 3.9 41 68-114 13-54 (105)
40 3hui_A Ferredoxin; cytochrome 97.9 3.6E-05 1.2E-09 61.4 7.3 56 44-113 18-74 (126)
41 1uwm_A Ferredoxin VI, FDVI; el 97.9 1.6E-05 5.6E-10 61.0 5.1 41 67-113 12-53 (106)
42 1jb0_C Photosystem I iron-sulf 97.6 2.9E-06 9.9E-11 61.1 -2.4 56 188-263 6-61 (80)
43 1xer_A Ferredoxin; electron tr 97.6 1E-05 3.5E-10 61.2 0.1 59 186-263 39-97 (103)
44 2fdn_A Ferredoxin; electron tr 97.6 2.6E-05 8.8E-10 52.2 2.1 47 189-263 5-51 (55)
45 1rgv_A Ferredoxin; electron tr 97.5 9.8E-05 3.4E-09 53.3 4.8 48 188-263 4-57 (80)
46 1rof_A Ferredoxin; electron tr 97.5 3.4E-05 1.2E-09 52.0 2.0 51 187-263 5-55 (60)
47 2fgo_A Ferredoxin; allochromat 97.5 0.00011 3.7E-09 53.3 4.6 47 188-262 4-56 (82)
48 1dwl_A Ferredoxin I; electron 97.4 4E-05 1.4E-09 51.5 1.5 51 188-263 5-55 (59)
49 2zvs_A Uncharacterized ferredo 97.4 0.0001 3.6E-09 53.9 3.7 47 188-262 4-57 (85)
50 1f2g_A Ferredoxin II; electron 97.4 3.2E-05 1.1E-09 52.0 0.7 49 190-263 6-54 (58)
51 3eun_A Ferredoxin; electron tr 97.4 6.1E-05 2.1E-09 54.8 2.1 48 188-263 4-57 (82)
52 1hfe_L Protein (Fe-only hydrog 97.3 7E-05 2.4E-09 71.2 2.0 53 184-263 27-80 (421)
53 1bc6_A 7-Fe ferredoxin; electr 97.3 0.00014 5E-09 51.9 3.1 48 188-263 4-53 (77)
54 7fd1_A FD1, protein (7-Fe ferr 97.2 5.4E-05 1.8E-09 57.8 0.5 48 188-263 4-53 (106)
55 1dax_A Ferredoxin I; electron 97.2 5.9E-05 2E-09 51.9 0.5 52 187-263 6-58 (64)
56 1h98_A Ferredoxin; electron tr 97.0 0.00011 3.8E-09 52.7 0.3 48 188-263 4-53 (78)
57 2pia_A Phthalate dioxygenase r 97.0 0.00051 1.8E-08 62.4 4.3 39 70-115 249-288 (321)
58 1iqz_A Ferredoxin; iron-sulfer 96.9 0.00012 4E-09 53.1 -0.4 18 246-263 48-65 (81)
59 2v2k_A Ferredoxin; iron, trans 96.9 0.00017 6E-09 54.7 0.3 48 188-263 4-53 (105)
60 1sj1_A Ferredoxin; thermostabi 96.8 0.00011 3.7E-09 50.4 -1.5 18 187-204 6-23 (66)
61 1jnr_B Adenylylsulfate reducta 96.8 0.00023 7.8E-09 58.2 0.1 52 187-263 5-61 (150)
62 3gyx_B Adenylylsulfate reducta 96.7 0.00025 8.4E-09 59.0 0.2 51 188-263 5-60 (166)
63 3zyv_A AOH1; oxidoreductase, m 96.7 0.0011 3.6E-08 71.5 4.8 83 66-153 17-116 (1335)
64 2c42_A Pyruvate-ferredoxin oxi 96.7 0.00027 9.3E-09 75.4 -0.2 20 187-206 683-702 (1231)
65 3zyy_X Iron-sulfur cluster bin 96.5 0.0019 6.6E-08 64.2 4.7 50 70-126 15-83 (631)
66 1y56_A Hypothetical protein PH 96.4 0.0018 6.3E-08 62.1 4.1 56 66-127 23-82 (493)
67 3n9z_C Adrenodoxin; cytochrome 96.4 0.00062 2.1E-08 53.9 0.3 43 66-113 16-59 (123)
68 1ti6_B Pyrogallol hydroxytrans 95.9 0.0022 7.6E-08 57.4 1.3 48 186-263 93-153 (274)
69 2ivf_B Ethylbenzene dehydrogen 95.7 0.0017 5.8E-08 60.3 0.1 18 246-263 208-234 (352)
70 2vpz_B NRFC protein; oxidoredu 95.6 0.0023 7.8E-08 54.4 0.4 20 186-205 52-73 (195)
71 1gte_A Dihydropyrimidine dehyd 95.6 0.00081 2.8E-08 70.5 -3.0 49 187-261 948-998 (1025)
72 2ivf_B Ethylbenzene dehydrogen 95.6 0.0023 8E-08 59.4 0.3 52 186-263 145-198 (352)
73 1kqf_B FDH-N beta S, formate d 95.5 0.0028 9.5E-08 57.3 0.7 47 187-263 128-183 (294)
74 1q16_B Respiratory nitrate red 95.5 0.0024 8.2E-08 62.0 -0.1 48 186-263 211-267 (512)
75 2vpz_B NRFC protein; oxidoredu 95.4 0.003 1E-07 53.6 0.5 47 186-263 84-139 (195)
76 1h0h_B Formate dehydrogenase ( 94.9 0.0068 2.3E-07 52.2 1.1 60 187-276 103-177 (214)
77 1q16_B Respiratory nitrate red 94.4 0.0073 2.5E-07 58.6 0.1 52 186-263 178-231 (512)
78 1kqf_B FDH-N beta S, formate d 94.3 0.0048 1.6E-07 55.7 -1.4 51 187-264 95-148 (294)
79 1ti6_B Pyrogallol hydroxytrans 93.9 0.017 5.8E-07 51.7 1.4 51 186-264 62-114 (274)
80 1h0h_B Formate dehydrogenase ( 92.4 0.026 9E-07 48.4 0.2 56 186-264 66-125 (214)
81 2gag_A Heterotetrameric sarcos 90.9 0.25 8.4E-06 51.4 5.6 58 66-127 30-101 (965)
82 3mm5_B Sulfite reductase, diss 89.7 0.024 8.3E-07 52.7 -2.8 19 245-263 237-255 (366)
83 2fgo_A Ferredoxin; allochromat 89.3 0.1 3.6E-06 37.0 0.9 18 246-263 5-22 (82)
84 2gmh_A Electron transfer flavo 89.3 0.032 1.1E-06 54.7 -2.5 55 187-263 507-567 (584)
85 2fdn_A Ferredoxin; electron tr 89.2 0.11 3.8E-06 33.8 0.9 18 246-263 5-22 (55)
86 1jb0_C Photosystem I iron-sulf 88.9 0.11 3.7E-06 36.4 0.7 18 246-263 7-24 (80)
87 1rgv_A Ferredoxin; electron tr 88.8 0.11 3.7E-06 36.8 0.7 18 246-263 5-22 (80)
88 3eun_A Ferredoxin; electron tr 88.7 0.12 4.2E-06 36.8 0.9 18 246-263 5-22 (82)
89 2zvs_A Uncharacterized ferredo 88.4 0.12 3.9E-06 37.2 0.7 17 247-263 6-22 (85)
90 1f2g_A Ferredoxin II; electron 87.7 0.13 4.6E-06 33.6 0.6 18 247-264 6-23 (58)
91 1xer_A Ferredoxin; electron tr 87.5 0.15 5E-06 37.7 0.7 18 246-263 42-59 (103)
92 1dax_A Ferredoxin I; electron 87.2 0.16 5.4E-06 34.1 0.7 17 246-263 8-24 (64)
93 3i9v_9 NADH-quinone oxidoreduc 86.6 0.21 7.2E-06 40.7 1.3 19 245-263 49-67 (182)
94 1rof_A Ferredoxin; electron tr 85.8 0.19 6.6E-06 32.8 0.5 19 246-264 7-25 (60)
95 3mm5_A Sulfite reductase, diss 85.6 0.15 5.2E-06 48.2 -0.1 20 245-264 282-301 (418)
96 1iqz_A Ferredoxin; iron-sulfer 85.5 0.22 7.4E-06 35.3 0.7 16 246-261 8-23 (81)
97 1dwl_A Ferredoxin I; electron 83.3 0.33 1.1E-05 31.5 0.8 18 246-263 6-23 (59)
98 2v2k_A Ferredoxin; iron, trans 82.5 0.41 1.4E-05 35.5 1.1 19 188-206 35-53 (105)
99 2l32_A Small archaeal modifier 82.2 1.2 4.2E-05 31.5 3.5 34 69-118 14-47 (74)
100 1ep3_B Dihydroorotate dehydrog 82.2 0.51 1.7E-05 40.9 1.8 26 97-122 223-251 (262)
101 7fd1_A FD1, protein (7-Fe ferr 81.5 0.44 1.5E-05 35.5 1.0 18 246-263 5-24 (106)
102 1h98_A Ferredoxin; electron tr 80.6 0.48 1.7E-05 33.1 0.9 18 246-263 5-24 (78)
103 2pa8_D DNA-directed RNA polyme 80.5 0.21 7.1E-06 44.2 -1.3 23 63-87 10-32 (265)
104 1bc6_A 7-Fe ferredoxin; electr 80.2 0.5 1.7E-05 32.9 0.9 18 246-263 5-24 (77)
105 1tyg_B YJBS; alpha beta barrel 79.8 5 0.00017 29.3 6.3 46 71-133 31-80 (87)
106 1sj1_A Ferredoxin; thermostabi 78.9 0.5 1.7E-05 31.4 0.5 18 246-263 8-25 (66)
107 3vr8_B Iron-sulfur subunit of 78.8 0.77 2.6E-05 41.0 1.8 29 245-273 178-213 (282)
108 2hj1_A Hypothetical protein; s 78.3 3.2 0.00011 31.0 4.9 66 46-127 11-77 (97)
109 2kl0_A Putative thiamin biosyn 77.5 4.7 0.00016 28.3 5.4 37 76-127 14-53 (73)
110 2h88_B Succinate dehydrogenase 77.4 0.37 1.3E-05 42.0 -0.6 19 245-263 154-172 (252)
111 2k5p_A THis protein, thiamine- 75.3 3.4 0.00012 29.4 4.2 46 66-127 8-57 (78)
112 3kvp_A Uncharacterized protein 74.2 1.2 4.2E-05 31.1 1.4 12 49-60 39-50 (72)
113 3i9v_1 NADH-quinone oxidoreduc 74.1 0.45 1.5E-05 45.2 -1.1 73 188-278 349-423 (438)
114 1jnr_B Adenylylsulfate reducta 74.0 0.6 2.1E-05 37.5 -0.2 19 188-206 43-61 (150)
115 1f0z_A THis protein; ubiquitin 74.0 5.6 0.00019 27.0 4.9 41 71-127 11-54 (66)
116 2q5w_D Molybdopterin convertin 73.3 3.6 0.00012 28.6 3.8 53 69-134 19-71 (77)
117 3cf4_A Acetyl-COA decarboxylas 73.0 1.5 5E-05 44.8 2.3 26 246-271 414-439 (807)
118 3or1_B Sulfite reductase beta; 72.9 0.93 3.2E-05 42.2 0.7 19 245-263 254-272 (386)
119 3gyx_B Adenylylsulfate reducta 72.2 0.72 2.5E-05 37.7 -0.2 19 188-206 42-60 (166)
120 2wdq_B Succinate dehydrogenase 70.7 0.77 2.6E-05 39.4 -0.3 18 188-205 202-219 (238)
121 1kf6_B Fumarate reductase iron 70.4 0.83 2.8E-05 39.3 -0.2 18 188-205 200-217 (243)
122 1hfe_L Protein (Fe-only hydrog 69.7 1.4 4.9E-05 41.3 1.2 19 188-206 62-80 (421)
123 3u7z_A Putative metal binding 69.5 5.8 0.0002 29.9 4.4 37 43-87 4-40 (101)
124 3hvz_A Uncharacterized protein 66.9 7.2 0.00025 27.8 4.3 60 51-134 7-66 (78)
125 2bs2_B Quinol-fumarate reducta 66.9 1.1 3.7E-05 38.6 -0.2 19 187-205 203-221 (241)
126 1rws_A Hypothetical protein PF 66.7 4.2 0.00014 28.6 3.0 41 70-127 25-65 (77)
127 2vdc_G Glutamate synthase [NAD 66.3 2.7 9.2E-05 39.6 2.4 22 185-206 15-38 (456)
128 1ryj_A Unknown; beta/alpha pro 65.8 26 0.00088 23.9 7.0 47 70-134 18-64 (70)
129 3rpf_C Molybdopterin convertin 63.3 23 0.00077 24.3 6.3 49 76-134 20-68 (74)
130 3or1_B Sulfite reductase beta; 62.8 1.4 4.7E-05 41.1 -0.3 19 187-205 253-271 (386)
131 2cu3_A Unknown function protei 62.1 15 0.00053 24.5 5.1 46 71-134 10-58 (64)
132 2c42_A Pyruvate-ferredoxin oxi 62.1 2.1 7.2E-05 45.7 0.8 19 245-263 684-702 (1231)
133 3mm5_B Sulfite reductase, diss 60.0 1.7 5.9E-05 40.0 -0.2 19 187-205 236-254 (366)
134 3or1_A Sulfite reductase alpha 59.2 2 7E-05 40.7 0.1 20 245-264 299-318 (437)
135 1vjk_A Molybdopterin convertin 58.5 16 0.00054 26.7 5.0 62 69-134 30-92 (98)
136 1rrb_A RAF-1 RBD, RAF proto-on 57.3 18 0.00061 27.4 5.0 67 65-143 28-101 (107)
137 3po0_A Small archaeal modifier 55.9 14 0.00049 26.2 4.3 65 67-135 19-84 (89)
138 3mm5_A Sulfite reductase, diss 55.1 2.2 7.7E-05 40.1 -0.3 20 187-206 281-300 (418)
139 3c8y_A Iron hydrogenase 1; dit 54.1 2.5 8.5E-05 41.3 -0.2 20 187-206 185-204 (574)
140 1fm0_D Molybdopterin convertin 49.4 19 0.00066 24.8 4.0 59 67-135 18-76 (81)
141 3or1_A Sulfite reductase alpha 48.8 3.3 0.00011 39.2 -0.3 20 187-206 298-317 (437)
142 1wgk_A Riken cDNA 2900073H19 p 48.8 84 0.0029 23.7 8.4 67 67-135 31-103 (114)
143 2l05_A Serine/threonine-protei 48.2 80 0.0028 23.3 8.4 75 47-141 17-95 (95)
144 2gmh_A Electron transfer flavo 45.6 4.1 0.00014 39.6 -0.2 19 188-206 549-567 (584)
145 1gte_A Dihydropyrimidine dehyd 44.2 8.1 0.00028 40.2 1.8 29 246-274 76-106 (1025)
146 3j16_B RLI1P; ribosome recycli 41.6 6.7 0.00023 38.6 0.6 19 245-263 51-69 (608)
147 2bb6_A TCII, TC II, transcobal 41.5 24 0.00082 33.1 4.4 43 46-98 317-359 (414)
148 2pmv_A Gastric intrinsic facto 39.9 28 0.00095 32.5 4.5 29 68-98 315-343 (399)
149 1wxm_A A-RAF proto-oncogene se 34.6 1E+02 0.0035 22.3 5.9 66 63-140 15-84 (86)
150 3i9v_3 NADH-quinone oxidoreduc 34.5 7.8 0.00027 39.2 -0.2 18 190-207 218-235 (783)
151 2qjl_A URM1, ubiquitin-related 33.4 1.1E+02 0.0037 22.1 6.1 63 66-135 20-94 (99)
152 3j16_B RLI1P; ribosome recycli 32.7 6 0.00021 38.9 -1.4 19 187-205 50-68 (608)
153 2kmm_A Guanosine-3',5'-BIS(dip 31.7 34 0.0012 22.9 2.9 42 71-127 14-55 (73)
154 3ny5_A Serine/threonine-protei 31.4 1.6E+02 0.0054 21.8 6.9 75 48-142 14-92 (96)
155 2pa8_D DNA-directed RNA polyme 28.2 8.9 0.00031 33.5 -0.9 17 188-204 199-215 (265)
156 3u30_A Ubiquitin, linear DI-ub 25.3 70 0.0024 25.3 4.1 35 44-87 17-51 (172)
157 2g1e_A Hypothetical protein TA 24.7 63 0.0022 22.5 3.4 59 72-134 21-84 (90)
158 3bk7_A ABC transporter ATP-bin 20.3 18 0.00061 35.5 -0.6 12 192-203 69-80 (607)
159 2kmz_A Tumor necrosis factor r 20.2 33 0.0011 22.2 0.8 14 187-200 17-30 (53)
No 1
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=100.00 E-value=6.5e-65 Score=462.43 Aligned_cols=238 Identities=58% Similarity=1.121 Sum_probs=215.7
Q ss_pred CCCCCceeEEEEEeeCCCC-CCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecc
Q 023670 41 ASANTDTKKFQIYRWNPDS-PSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA 119 (279)
Q Consensus 41 ~~~~~~~~~~~i~R~~p~~-~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lA 119 (279)
+.+.+++++|+||||||+. +++||||+|+|+++++|+||||||+++++++||+|+|+.+|++|+||+|+|+|||++++|
T Consensus 29 ~~~~~~~~~~~I~R~~p~~~~~~p~~~~~~v~v~~~~~tlLdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~InG~~~la 108 (282)
T 3vr8_B 29 APTGKRIKTFEIYRFNPEEPGAKPKLQKFDVDLDKCGTMVLDALIKIKNEVDPTLTFRRSCREGICGSCAMNIAGENTLA 108 (282)
T ss_pred ccCCCeeEEEEEEEeCCCCCCCCCCcEEEEEEeCCCCCcHHHHHHhcCcccCCceeecCCCCCCCCCCCEEEECCEEecc
Confidence 3456789999999999985 678999999999976579999999999987899999999999999999999999999999
Q ss_pred ccccccC-CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcc
Q 023670 120 CLTKISP-SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACC 198 (279)
Q Consensus 120 C~t~v~~-g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C 198 (279)
|.|++.+ .++.++||||++||||||||||++.||++|++++||+..+...+...++++|+++++++++++++||+||+|
T Consensus 109 C~t~v~~~~~~~~tIepL~~~pVikDLvvD~~~f~~~~~~v~p~l~~~~~~~~~~~~~~qs~~~~~~~~~~~~CI~CG~C 188 (282)
T 3vr8_B 109 CICNIDQNTSKTTKIYPLPHMFVIKDLVPDMNLFYAQYASIQPWLQKKTKINLGEKQQYQSIKEQEKLDGLYECILCACC 188 (282)
T ss_pred hhhhHhHhcCCcEEeccCCCCceeeccccccHHHHHHHHHHhhhcCCCCCCCCCchhcccCHHHHHHHHhhhhCcccCcC
Confidence 9999983 467899999999999999999999999999999999987654322356788999999999999999999999
Q ss_pred cCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670 199 STSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 199 ~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~ 278 (279)
.++||++++++++|+||++++++++++.++++....++++.+.+..++|.|++||+|+.+||+||++.++|..+|+++++
T Consensus 189 ~~aCP~~~~~~~~~lGP~~li~a~r~~~d~rd~~~~erl~~l~~~~~l~~C~~Cg~C~~vCP~gI~~~~~I~~lR~~l~~ 268 (282)
T 3vr8_B 189 SASCPSYWWNADKYLGPAVLMQAYRWIIDSRDDSAAERLARMQDGFSAFKCHTIMNCTKTCPKHLNPARAIGEIKMLLTK 268 (282)
T ss_pred cccCCceeccCCcCCCHHHHHHHHHHHhCCcccchHHHHHHHhhcCCcccChhhCCccccCcCCCCHHHHHHHHHHHHHH
Confidence 99999999887889999999999999999988766677776655678999999999999999999999999999999875
No 2
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=100.00 E-value=4.1e-57 Score=406.11 Aligned_cols=237 Identities=63% Similarity=1.224 Sum_probs=207.5
Q ss_pred CCCceeEEEEEeeCCCCCC-CCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccc
Q 023670 43 ANTDTKKFQIYRWNPDSPS-KPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACL 121 (279)
Q Consensus 43 ~~~~~~~~~i~R~~p~~~~-~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~ 121 (279)
+.+++++|+||||||+.+. +|||++|+|+++++|+||||||+++++++||+|+|+.+|+.|+||+|+|+|||++++||+
T Consensus 7 ~~~~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~~~~tlLd~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~ 86 (252)
T 2h88_B 7 ATSRIKKFSIYRWDPDKPGDKPRMQTYEVDLNKCGPMVLDALIKIKNELDSTLTFRRSCREGICGSCAMNIAGGNTLACT 86 (252)
T ss_dssp -CCCEEEEEEEECCTTSTTSCCEEEEEEEEGGGSCSBHHHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEETTEEEEGGG
T ss_pred CCCceEEEEEEEeCCCCCCCCceEEEEEEecCCCCChHHHHHHHhCcccCCCccccCCCCCCCCCCCEEEECCcEEcccc
Confidence 3467899999999999987 999999999997657999999999987679999999999999999999999999999999
Q ss_pred ccccCC-CCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccC
Q 023670 122 TKISPS-GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCST 200 (279)
Q Consensus 122 t~v~~g-~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~ 200 (279)
|++.++ ++.++||||++||+|+||++|+++|+++++.++||+......+....+.++++++...+.+..+||+||.|+.
T Consensus 87 ~~~~~~~g~~~~iepl~~~pvikDLvvD~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~Ci~CG~C~~ 166 (252)
T 2h88_B 87 KKIDPDLSKTTKIYPLPHMYVVKDLVPDLSNFYAQYKSIEPYLKKKDESKQGKEQYLQSIEDRQKLDGLYECILCACCST 166 (252)
T ss_dssp SBCCCCTTSCEEEECSTTCBEEETTEECCHHHHHHHHHTCCSCCCSCCTTTTSSCCCCCHHHHHTTTTTTTCCCCCTTGG
T ss_pred CCHhHcCCCceEEecccCCCccccceeccHHHHHHhhhccCccccCCCCCCccccccCCHHHHHHhHhHHhchhhCcchh
Confidence 999974 4579999999999999999999999999999999998654322123347788889888999999999999999
Q ss_pred CCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670 201 SCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279 (279)
Q Consensus 201 ~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~ 279 (279)
+||.+.++++.|+||+.++++++++.+++++...+++..+.+..++|.|++||+|+.+||+||++.++|..||+.++++
T Consensus 167 ~CP~~~~~~~~~lgP~~~~~~~r~~~~~r~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~i~~~~~i~~lr~~~~~~ 245 (252)
T 2h88_B 167 SCPSYWWNGDKYLGPAVLMQAYRWMIDSRDDYTEERLAQLQDPFSLYRCHTIMNCTRTCPKGLNPGKAIAEIKKMMATY 245 (252)
T ss_dssp GCHHHHHHTTTCCHHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHHC
T ss_pred hCCCCccCCCCcCCHHHHHHHHHHhhCCcccchHHHHHHHhcccCCCcCccccchhhhcCCCCCHHHHHHHHHHHHHHc
Confidence 9999877666799999999999988888776555666545444578999999999999999999999999999988753
No 3
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=100.00 E-value=1.1e-54 Score=387.45 Aligned_cols=232 Identities=29% Similarity=0.581 Sum_probs=202.6
Q ss_pred ceeEEEEEeeCCCCC-CCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccc
Q 023670 46 DTKKFQIYRWNPDSP-SKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKI 124 (279)
Q Consensus 46 ~~~~~~i~R~~p~~~-~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v 124 (279)
.+++|+||||||+.| ++|||++|+|++++ |+||||||+++++++||+|+|+.+|+.|+||+|+|+|||++++||+|++
T Consensus 3 ~~~~~~i~R~~~~~~~~~~~~~~~~v~~~~-~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i~G~~~~aC~~~~ 81 (241)
T 2bs2_B 3 RMLTIRVFKYDPQSAVSKPHFQEYKIEEAP-SMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMINGRPSLACRTLT 81 (241)
T ss_dssp CEEEEEEEECCTTCTTCCCEEEEEEEECCT-TCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBG
T ss_pred ceEEEEEEEeCCCCCCCCceEEEEEEeCCC-CChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEECCCeecchhCcH
Confidence 579999999999998 89999999999998 9999999999987779999999999999999999999999999999999
Q ss_pred cCC-CCceEEeeCCCCcchhhhhhccchhhhhh-hccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCC
Q 023670 125 SPS-GSASTITPLPHMFVIKDLVVDMTNFYNQY-KSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSC 202 (279)
Q Consensus 125 ~~g-~~~~~iepl~~~~vikDLvvD~~~~~~~~-~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~C 202 (279)
.++ +++++||||++||+++||+||+++|++++ +.+++|+..++....+..+.++++++...+.+..+||.||.|+.+|
T Consensus 82 ~~~~g~~~~ie~l~~~pvikDLvvD~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~C 161 (241)
T 2bs2_B 82 KDFEDGVITLLPLPAFKLIKDLSVDTGNWFNGMSQRVESWIHAQKEHDISKLEERIEPEVAQEVFELDRCIECGCCIAAC 161 (241)
T ss_dssp GGCTTSEEEEECCTTSEEEETTEEECHHHHHHHHHHTTCSCCCSSCCCTTSCCCCCCHHHHHHHHHHHTCCCCCHHHHTC
T ss_pred hHcCCCeEEEecCCCCCcceeceeeCHHHHHHHHHHhcCeeccCCCCCCccccccCCHHHHHHhhhhhhhhccCcCcccC
Confidence 975 36799999999999999999999999999 9999999875543212223348888888888899999999999999
Q ss_pred CCcccCCCcccCHHHHHHHHHHhhcC-cchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHhC
Q 023670 203 PSYWWTSEAYLGPAALLHANRWISDS-RDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLKR 279 (279)
Q Consensus 203 P~~~~~~~~~~gP~~l~~a~r~~~d~-r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~~ 279 (279)
|.+.++ .+|+||+.+++++++..++ ++....+++..+.+..++|.|++||+|+.+||++|++.++|..+|+.++++
T Consensus 162 P~~~~~-~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~i~~~~~i~~lr~~~~~~ 238 (241)
T 2bs2_B 162 GTKIMR-EDFVGAAGLNRVVRFMIDPHDERTDEDYYELIGDDDGVFGCMTLLACHDVCPKNLPLQSKIAYLRRKMVSV 238 (241)
T ss_dssp HHHHHC-TTCCHHHHHHHHHHHHTCTTCCCCHHHHHHHHCSTTTGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHTTC
T ss_pred CCCccC-CCCCCHHHHHHHHHHhhCccccccHHHHHHHHhcccCcccCcccChhhHhcCCCCChHHHHHHHHHHHHHh
Confidence 998765 3689999999999987776 654444566555345689999999999999999999999999999998763
No 4
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=100.00 E-value=2.2e-52 Score=371.79 Aligned_cols=230 Identities=52% Similarity=1.045 Sum_probs=199.5
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEeccCC-CchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEINLKEC-GPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS 125 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~-g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~ 125 (279)
+++|+||||||+.|++|||++|+|+++++ |+||||||+++++. ||+|+|+.+|+.|+||+|+|+|||+++|||.|++.
T Consensus 2 ~~~~~i~R~~~~~~~~~~~~~~~v~~~~~~~~tll~~l~~~~~~-~~~l~~~~~C~~g~Cg~C~v~v~G~~~laC~~~~~ 80 (238)
T 2wdq_B 2 RLEFSIYRYNPDVDDAPRMQDYTLEADEGRDMMLLDALIQLKEK-DPSLSFRRSCREGVCGSDGLNMNGKNGLACITPIS 80 (238)
T ss_dssp EEEEEEEECCTTTCSSCEEEEEEEECCTTCCCBHHHHHHHHHHH-CTTCCCCCSSSSSSSCTTEEEETTEEEEGGGCBGG
T ss_pred eEEEEEEEcCCCCCCCCceEEEEeecCCCCCChHHHHHHHhccc-CCCccccccCCCCCCCCCEEEECCEEEcccccchh
Confidence 48999999999999999999999999753 79999999999964 99999999999999999999999999999999999
Q ss_pred C-C--CCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCC
Q 023670 126 P-S--GSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSC 202 (279)
Q Consensus 126 ~-g--~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~C 202 (279)
+ | +..++||||.+||+|+||++|++.++++++++.+|+.....+. ...+..+++++...+.+.++||+||+|+.+|
T Consensus 81 ~~g~~~~~~~ie~l~~~pvi~dlv~d~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~C 159 (238)
T 2wdq_B 81 ALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNP-PAREHLQMPEQREKLDGLYECILCACCSTSC 159 (238)
T ss_dssp GTCCTTSCEEEECCTTSBEEETTEECCHHHHHHHHHTCCSCCCCCSSC-CSSSCCCCHHHHHTTTTTTTCCCCCTTGGGC
T ss_pred hhccCCCCEEEeeCCCCcchhhceechHHHHHHHHhhcCccccCcCCC-CcccccCCHHHHHHHhccccccccCCchhhC
Confidence 8 4 2358999999999999999999999999999999997654331 1245677888888889999999999999999
Q ss_pred CCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670 203 PSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 203 P~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~ 278 (279)
|.+..+.++|+||+.++.+++++.++++....+++..+.+..+.|.|++||+|+.+||+||++.++|..+|+.+++
T Consensus 160 P~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~lr~~~~~ 235 (238)
T 2wdq_B 160 PSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQ 235 (238)
T ss_dssp HHHHHCTTTSCCHHHHHHHHHHHTCTTCCCHHHHHHTTCSTTTTTTCCCCCHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred cCCccCCCCCCCHHHHHHHHHHHhCCcccchHHHHHHHhccCCCCcCcccchhhhhcCCCCCHHHHHHHHHHHHHh
Confidence 9987665568999999998888777776544455554443457899999999999999999999999999998875
No 5
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=100.00 E-value=4.5e-51 Score=364.34 Aligned_cols=228 Identities=31% Similarity=0.584 Sum_probs=197.6
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP 126 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~ 126 (279)
+++|+||||||++|++|||+.|+|++++ |+||||||+++|.++||+|+|+.+|+.|+||+|+|+|||++++||.|++.+
T Consensus 5 ~~~~~i~R~~~~~~~~~~~~~~~~~~~~-~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v~G~~~~aC~~~~~~ 83 (243)
T 1kf6_B 5 NLKIEVVRYNPEVDTAPHSAFYEVPYDA-TTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRD 83 (243)
T ss_dssp EEEEEEEECCTTTCSSCEEEEEEEEECT-TCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEETTEEEEGGGCBGGG
T ss_pred eEEEEEEEcCCCCCCCCeeEEEEEecCC-CChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEECCEEEeeeeeEHhh
Confidence 4999999999999999999999999998 999999999998666999999999999999999999999999999999998
Q ss_pred CCCceEEeeCCCCcchhhhhhccchhhhhhhccccccccCCCCCCCCCC-CCCChhhHhhhcccccCcccCcccCCCCCc
Q 023670 127 SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKE-IPQSKKDRAKLDGMYECILCACCSTSCPSY 205 (279)
Q Consensus 127 g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~-~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~ 205 (279)
+.+.++|+||++++++|||++|++.|+.++..+++|+......+ ..+ ..+++++...+.+.++||.||.|+.+||.+
T Consensus 84 ~~~~~~i~~l~~~~~~kdl~~dl~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ 161 (243)
T 1kf6_B 84 YTDGMKVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNSRTA--DQGTNIQTPAQMAKYHQFSGCINCGLCYAACPQF 161 (243)
T ss_dssp CTTCEEEECCTTSCEEETTEECCHHHHHHHHHTCCSCCSCCCCG--GGCCCCCCHHHHHTTGGGGCCCCCCHHHHHCHHH
T ss_pred CCCcEEEEecCCCCccceeEEecHHHHHHHHhcCCeeccCcCCC--ccccccCCHHHHHHhhhhhhccccCccccccCCC
Confidence 75679999999999999999999999999999999987543211 223 567777778888999999999999999998
Q ss_pred ccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCChHHHHHHHHHHHHh
Q 023670 206 WWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQIINIKQLQLK 278 (279)
Q Consensus 206 ~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~~~~ 278 (279)
..+. .|+||+++..++++..++++....+++..+....+.|.|++||+|+.+||+||++.++|..+|+.+++
T Consensus 162 ~~~~-~~~gP~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~gi~~~~~i~~~r~~~~~ 233 (243)
T 1kf6_B 162 GLNP-EFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKHVDPAAAIQQGKVESSK 233 (243)
T ss_dssp HHCT-TSCCHHHHHHHHHHHTCTTCCCTHHHHHHHHSTTTGGGCCCCCHHHHHCTTCCCHHHHHHHHHHHHHH
T ss_pred cccC-CCCCHHHHHHHHHHhhCccccchHHHHHHHhccCCcccCcccCCcchhCCCCCCHHHHHHHHHHHHHH
Confidence 7654 39999999999888767665433344443433457899999999999999999999999999998764
No 6
>3kwl_A Uncharacterized protein; putative oxidoreductase, multidomain, unknown function; 1.94A {Helicobacter pylori}
Probab=100.00 E-value=3.9e-43 Score=343.75 Aligned_cols=194 Identities=18% Similarity=0.329 Sum_probs=172.7
Q ss_pred CCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccc
Q 023670 44 NTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTK 123 (279)
Q Consensus 44 ~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~ 123 (279)
+.++++|+||||||+.|++||||+|+|++++ ++||||||.+|+ +|+||+ ||+|+|||+++|| .|.
T Consensus 21 ~~~~~~~~i~R~~p~~~~~p~~~~y~v~~~~-~~~vLd~L~~ik-----~l~fr~--------sCam~ING~~~la-~t~ 85 (514)
T 3kwl_A 21 SVLKLHVKVFRFETNKDYNPAYESYFLEYQE-DQYLLDLLKQLK-----GVSYSE--------NIALKINQIAVFE-DAK 85 (514)
T ss_dssp CCCEEEEEEEECBTTSCSCCEEEEEEEECCT-TCBHHHHHTTST-----TCCCCS--------SCCEEETTEEECS-CCB
T ss_pred cceEEEEEEEEeCCCCCCCCceEEEEEeCCC-CCcHHHHHHHhh-----hCeeec--------cceEEECCEehhh-hhh
Confidence 3567999999999999999999999999988 899999999998 788887 7999999999999 677
Q ss_pred ccC----CCCceEEeeCCCCcchhhhhhccchhhhhhhcc---ccccccCCCCCCCCCCCCCChhhHhhhcccccCcccC
Q 023670 124 ISP----SGSASTITPLPHMFVIKDLVVDMTNFYNQYKSI---EPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCA 196 (279)
Q Consensus 124 v~~----g~~~~~iepl~~~~vikDLvvD~~~~~~~~~~~---~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG 196 (279)
+.+ .+++++||||++||||||||||++.|+++|+++ +||+. +++++.++.+ |
T Consensus 86 ~~~~~~~~~~~i~iePl~~~pvikDLvvD~~~f~~~~~~i~~~~p~~~---------------~~~~~~~~~~---~--- 144 (514)
T 3kwl_A 86 VSDLVAFFSKEWVLDPLSKRYALKDLMIDEKAVLKNYEDFFKQVPYIT---------------KGEKEELEKF---I--- 144 (514)
T ss_dssp HHHHHHHHCSEEEEECSCSTTEEETTEECHHHHHGGGHHHHHTCTTSC---------------HHHHHGGGGT---G---
T ss_pred HHHHhhccCCcEEEEECCCCcccccceeccHHHHHHHHHhhcCCCCCC---------------HHHHHHHhhc---C---
Confidence 653 256899999999999999999999999999999 99984 3566666666 3
Q ss_pred cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHh-hcccCccCchhhhhhhhhCCCCCChHHHHHHHHHH
Q 023670 197 CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAI-DDEFKLYRCHTILNCARACPKGLNPGKQIINIKQL 275 (279)
Q Consensus 197 ~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l-~~~~~~~~C~~Cg~C~~vCP~gi~~~~~I~~lR~~ 275 (279)
+|+++||++ + ++|+||+++++++||+.|+||..+ +|++.+ +.+.++|.|++| |+++||++|++.+.|.+||++
T Consensus 145 ~C~~aCp~~--~-~~f~Gpa~l~~a~r~~~d~rd~~~-~rl~~l~~~~~gv~~C~~~--C~~~CPk~i~~~~~I~~lr~~ 218 (514)
T 3kwl_A 145 QINFINPQT--N-PKYLGDGFFLYVKWLMKRYPTERD-RLLEMISQPESGVMNFLSV--AHYLYKNDDNIDHEIYELQEI 218 (514)
T ss_dssp GGGGTCCCC--C-TTCCCHHHHHHHHHHHHHCGGGHH-HHHHHTCCTTTSGGGCCCC--GGGBTTCCCHHHHHHHHHHHH
T ss_pred hhhccCCCC--C-cccCcHHHHHHHHHHhcCCcchHH-HHHHHhhcCcccccccccc--ccccCCCCCCHHHHHHHHHHH
Confidence 999999984 4 679999999999999999999876 888877 455799999999 999999999999999999999
Q ss_pred HHhC
Q 023670 276 QLKR 279 (279)
Q Consensus 276 ~~~~ 279 (279)
++++
T Consensus 219 ~~~~ 222 (514)
T 3kwl_A 219 LTNS 222 (514)
T ss_dssp HHTS
T ss_pred HHHh
Confidence 8764
No 7
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=99.82 E-value=1.7e-20 Score=157.42 Aligned_cols=134 Identities=19% Similarity=0.321 Sum_probs=103.4
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC--CCCceEEeeCCCCcchh
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP--SGSASTITPLPHMFVIK 143 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~--g~~~~~iepl~~~~vik 143 (279)
+.|++++++ ++||||+|+++. +.+.++.+|++|+||+|+|+|||++++||.+++.+ |.+.++||||.+++++
T Consensus 12 ~~~~v~~~~-~~tLL~~Lr~~~----gl~g~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~v~TiEgL~~~~~~- 85 (161)
T 1rm6_C 12 RAREDLVPD-NMLLLDYLRETV----GLTGTKQGCDGGECGACTVLVDDRPRLACSTLAHQVAGKKVETVESLATQGTL- 85 (161)
T ss_dssp EEEEEEEET-TCBHHHHHHHTT----CCTTSCCCSSSSSSCTTEEEETTEEEEGGGSBGGGGTTSEEECGGGSSBTTBC-
T ss_pred EEEEEecCC-cCcHHHHHHHcC----CCcccccCCCCCCCCCCEEEECCcEEechHHHHHHhCCceEEEECCCCCCCcc-
Confidence 778888888 899999999974 24678999999999999999999999999999995 7677889999865431
Q ss_pred hhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHH
Q 023670 144 DLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANR 223 (279)
Q Consensus 144 DLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r 223 (279)
++.+...++ ..+++||.|++. .++.+++
T Consensus 86 -----------------------------------~p~q~a~~~--~~~~qCG~Ctpg---------------~im~a~~ 113 (161)
T 1rm6_C 86 -----------------------------------SKLQAAFHE--KLGTQCGFCTPG---------------MIMASEA 113 (161)
T ss_dssp -----------------------------------CHHHHHHHH--HTCCSSCSSHHH---------------HHHHHHH
T ss_pred -----------------------------------CHHHHHHHH--hCCCcCCCCchH---------------HHHHHHH
Confidence 112222222 346999999972 5677888
Q ss_pred HhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhC
Q 023670 224 WISDSRDEYTKERLEAIDDEFKLYRCHTILNCARAC 259 (279)
Q Consensus 224 ~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vC 259 (279)
++.+.++. ++++++...+ .++++|+.+.+|.++|
T Consensus 114 ll~~~~~p-t~~~i~~~l~-gnlcRCtgy~~i~~A~ 147 (161)
T 1rm6_C 114 LLRKNPSP-SRDEIKAALA-GNLCRCTGYVKIIKSV 147 (161)
T ss_dssp HHHHCSSC-CHHHHHHHTT-TCCCSSSCSHHHHHHH
T ss_pred HHhcCCCC-CHHHHHHHHc-CCeECCCCCHHHHHHH
Confidence 88877763 4566654433 4899999999999876
No 8
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=99.77 E-value=8.6e-19 Score=148.01 Aligned_cols=134 Identities=21% Similarity=0.343 Sum_probs=99.0
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCc-cccCCCCCCccCeeEEEECCeeeccccccccC--CCCceEEeeCCCCcch
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSL-TFRRSCREGICGSCAMNIDGCNGLACLTKISP--SGSASTITPLPHMFVI 142 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl-~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~--g~~~~~iepl~~~~vi 142 (279)
+.|++++++ ++||||+|++.. .| .++.+|+.|+||+|+|+|||++++||.+++.+ |.+.++||||.+++.+
T Consensus 19 ~~~~~~v~~-~~tlL~~Lr~~~-----gl~g~~~~C~~G~CGaC~V~vdG~~v~sC~~~~~~~~G~~v~Tiegl~~~~~~ 92 (168)
T 1t3q_A 19 KPRVFYVEP-RMHLADALREVV-----GLTGTKIGCEQGVCGSCTILIDGAPMRSCLTLAVQAEGCSIETVEGLSQGEKL 92 (168)
T ss_dssp EEEEEEECT-TSBHHHHHHHTT-----CCTTSCCSCSSSSSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTCCSSSC
T ss_pred EEEEEecCC-CCcHHHHHHhcC-----CCCccccCCCCCCCCCcEEEECCCEeechhhHHHHhCCCeEEEEcCCCCcccc
Confidence 678888888 899999999962 13 37789999999999999999999999999996 7677889998764310
Q ss_pred hhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHH
Q 023670 143 KDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHAN 222 (279)
Q Consensus 143 kDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~ 222 (279)
.+.+...+ ...+++||.|. |..++.++
T Consensus 93 ------------------------------------~~~q~a~~--~~~~~qCG~C~---------------pg~i~~a~ 119 (168)
T 1t3q_A 93 ------------------------------------NALQDSFR--RHHALQCGFCT---------------AGMLATAR 119 (168)
T ss_dssp ------------------------------------CHHHHHHH--HTTCCSSCSSH---------------HHHHHHHH
T ss_pred ------------------------------------CHHHHHHH--HhCCCcCCCch---------------HHHHHHHH
Confidence 01121222 23468999999 45677788
Q ss_pred HHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCC
Q 023670 223 RWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP 260 (279)
Q Consensus 223 r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP 260 (279)
+++.+.++. +.+++.... ..++++|+.|++|+++|=
T Consensus 120 ~ll~~~~~p-~~~~i~~~l-~gnlcRCt~y~~~v~A~~ 155 (168)
T 1t3q_A 120 SILAENPAP-SRDEVREVM-SGNLCRCTGYETIIDAIT 155 (168)
T ss_dssp HHHHHCSSC-CHHHHHHHG-GGSCCSSSCSHHHHHHHT
T ss_pred HHHhcCCCC-CHHHHHHHH-cCCcccCCCchHHHHHHH
Confidence 887666543 234444332 257999999999999984
No 9
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=99.76 E-value=2.1e-19 Score=183.67 Aligned_cols=171 Identities=14% Similarity=0.121 Sum_probs=100.2
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCC-CCCCccCeeEEEECC-----------------------eeecccccccc
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRS-CREGICGSCAMNIDG-----------------------CNGLACLTKIS 125 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~-c~~g~CG~C~v~inG-----------------------~~~lAC~t~v~ 125 (279)
|++++ |+|||+|++++|. .+|+|||+.. ++.|.||+|+|+|+| ++++||.|++.
T Consensus 11 ~~v~~-g~til~a~~~~gi-~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~~aC~t~v~ 88 (783)
T 3i9v_3 11 VEVPP-GTSVMDAVFHAGY-DVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVA 88 (783)
T ss_dssp EEECT-TCBHHHHHHHTTC-CCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSSCEETTTCBCC
T ss_pred EEeCC-CChHHHHHHHhCC-CccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCCcccccCCCCC
Confidence 45557 9999999999994 6899999998 578999999999964 56789999999
Q ss_pred CCCCceEEeeCCC-----Ccchhhhhhccchhhh---------hhhcccccccc--------------CCCCCCCCCCCC
Q 023670 126 PSGSASTITPLPH-----MFVIKDLVVDMTNFYN---------QYKSIEPWLKR--------------KNPPPMPGKEIP 177 (279)
Q Consensus 126 ~g~~~~~iepl~~-----~~vikDLvvD~~~~~~---------~~~~~~p~l~~--------------~~~~~~~~~~~~ 177 (279)
+| +.|+--+. ...+-+|++..++..+ .+|++.-.+.. ...++...+..+
T Consensus 89 ~g---m~v~t~~~~~~~~r~~~le~ll~nhp~dC~~C~~~g~C~Lq~~~~~~g~~~~~~~~~~~~~p~~~r~~~~k~~~~ 165 (783)
T 3i9v_3 89 DG---MVVDTLSDVVREAQAGMVEFTLLNHPLDCPTCDKGGACELQDRTVEYGLYEKYYQKGPLELPVYTRFEFTRRHVD 165 (783)
T ss_dssp SS---EEEESSSHHHHHHHHHHHHHHHTSCCCCTTTCTTGGGCHHHHHHHHHCSCCCC------CCCCCCCCCSCCCCCC
T ss_pred CC---CEEEECCHHHHHHHHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHHhCCccccccccccccccccccccccccCC
Confidence 87 44443210 1122334444443322 34443211111 111110011111
Q ss_pred CCh-hhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhh
Q 023670 178 QSK-KDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCA 256 (279)
Q Consensus 178 ~s~-~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~ 256 (279)
.+. .......+.++||.||+|+.+||.....+ .++ ...++... .+........|+.||+|+
T Consensus 166 ~~~~~~p~i~~d~~~CI~C~~Cv~~C~~~~~~~--~i~-----------~~~~g~~~-----~i~~~~~~~~C~~CG~Cv 227 (783)
T 3i9v_3 166 KHHPLSPFVILDRERCIHCKRCVRYFEEVPGDE--VLD-----------FIERGVHT-----FIGTMDFGLPSGFSGNIT 227 (783)
T ss_dssp CSEEEETTEEECTTTCCCCCHHHHHHHHTTCCC--CCE-----------ECSCTTSC-----CEECSSTTCCSTTTTTHH
T ss_pred cccCCCccEEEchhhCCCccHHHHHhhhhcCCc--eee-----------eecCCCcc-----EEccCCCCCCCccchhHH
Confidence 111 11234467899999999999997653211 111 11111100 011111235899999999
Q ss_pred hhCCCCC
Q 023670 257 RACPKGL 263 (279)
Q Consensus 257 ~vCP~gi 263 (279)
++||+|+
T Consensus 228 ~vCP~gA 234 (783)
T 3i9v_3 228 DICPVGA 234 (783)
T ss_dssp HHCSSSS
T ss_pred hhcccCc
Confidence 9999997
No 10
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=99.68 E-value=4.1e-19 Score=175.87 Aligned_cols=186 Identities=18% Similarity=0.273 Sum_probs=105.8
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCC-C-CCccCeeEEEECCe-eeccccccccCCCCceEEeeCCC--Ccchhh
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSC-R-EGICGSCAMNIDGC-NGLACLTKISPSGSASTITPLPH--MFVIKD 144 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~-~g~CG~C~v~inG~-~~lAC~t~v~~g~~~~~iepl~~--~~vikD 144 (279)
|++++ |+|||+||+++|. .+|+||++.+| + .|.||+|.|+|||. .++||.|++.+|....+.++.-. ...+.+
T Consensus 11 v~v~~-g~tiL~a~~~~gi-~ip~lC~~~~~~~~~G~Cg~C~V~v~g~~~~~aC~t~v~~gm~V~T~~~~~~~~r~~~le 88 (574)
T 3c8y_A 11 FNTDE-DTTILKFARDNNI-DISALCFLNNCNNDINKCEICTVEVEGTGLVTACDTLIEDGMIINTNSDAVNEKIKSRIS 88 (574)
T ss_dssp EEECC-CCBHHHHHHHTTC-CCCCSSCBTTBCCSSSCCCTTEEEETTTEEEEGGGCBCCTTCEEESSCHHHHHHHHHHHH
T ss_pred EEeCC-CCHHHHHHHHcCC-CCCcccCCCCCCCCcccCCCCEEEeCCCcccccCCCCcccceeEEecchhhhhhHHHHHH
Confidence 45667 8999999999984 69999999997 7 89999999999998 89999999998733333332210 112334
Q ss_pred hhhccchhhh---------hhhccccccccC--CCC-CCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcc
Q 023670 145 LVVDMTNFYN---------QYKSIEPWLKRK--NPP-PMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAY 212 (279)
Q Consensus 145 LvvD~~~~~~---------~~~~~~p~l~~~--~~~-~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~ 212 (279)
|+++.++..+ .++.+.-.+... ..+ + ..+....+........+.++||.||.|+.+||.....+
T Consensus 89 lll~~h~~~C~~C~~~~~C~Lq~~a~~~Gv~~~~~f~~-~~~~~~~~~~~~~i~~d~~kCi~Cg~Cv~~CP~~~~~~--- 164 (574)
T 3c8y_A 89 QLLDIHEFKCGPCNRRENCEFLKLVIKYKARASKPFLP-KDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNTETY--- 164 (574)
T ss_dssp HHHTTSCCCCTTCTTTTSCHHHHHHHHHTCCCSSCCCC-SCGGGGEECCSSSEEEEGGGCCCCCHHHHHHHHHHSCC---
T ss_pred HHHhccCCCCCcCCCCcchHHHHHHHHhccCCCcCCCC-CccccccccCCCcceeCcccCcCCCCccchhCchhcCC---
Confidence 4444444332 233322111111 111 1 00000011111234567789999999999999632100
Q ss_pred cCHHHHHHHHHHhhcCcchhHHHHHH-HhhcccCccCchhhhhhhhhCCCCC-----ChHHHHHHHH
Q 023670 213 LGPAALLHANRWISDSRDEYTKERLE-AIDDEFKLYRCHTILNCARACPKGL-----NPGKQIINIK 273 (279)
Q Consensus 213 ~gP~~l~~a~r~~~d~r~~~~~erl~-~l~~~~~~~~C~~Cg~C~~vCP~gi-----~~~~~I~~lR 273 (279)
++.+..++... ++. ..........|+.||.|+.+||+|+ .+.++|..++
T Consensus 165 --------ai~~~~~g~~~----~i~~~~~~~i~~~~Ci~Cg~Cv~~CP~gAi~~~~~~~~v~~~l~ 219 (574)
T 3c8y_A 165 --------AMKFLNKNGKT----IIGAEDEKCFDDTNCLLCGQCIIACPVAALSEKSHMDRVKNALN 219 (574)
T ss_dssp --------CSEEEEETTEE----EEESGGGCCGGGSSCCCCCHHHHHCSSTTEEECCCHHHHHHHHH
T ss_pred --------ceeeccCCccc----eecccccceechhhCCcchhHHHhhccCCccccccHHHHHHhhc
Confidence 00000000000 000 0001123578999999999999985 2444454443
No 11
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=99.57 E-value=8.3e-15 Score=122.81 Aligned_cols=68 Identities=19% Similarity=0.326 Sum_probs=59.4
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH 138 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~ 138 (279)
+.|++++++ ++||||+|++.. +.+.++.+|++|.||+|+|.|||++++||.+++. +|.+.++||+|.+
T Consensus 13 ~~~~~~v~~-~~tLLd~LR~~l----gltg~k~gC~~G~CGaCtV~vdG~~v~sC~~~~~~~~G~~I~TiEgL~~ 82 (163)
T 1ffv_A 13 KAQEKAVEP-RTLLIHFLREEL----NLTGAHIGCETSHCGACTVDIDGRSVKSCTHLAVQCDGSEVLTVEGLAN 82 (163)
T ss_dssp EEEEEEECT-TCBHHHHHHHTS----CCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGTSB
T ss_pred EEEEEecCC-CCcHHHHHHhcC----CCcccccCCCCCCCCCCEEEECCcEecchHhhHHHhCCceEEEECCCCC
Confidence 678888888 899999999853 2467889999999999999999999999999999 6767788998864
No 12
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=99.56 E-value=1.5e-14 Score=121.59 Aligned_cols=133 Identities=15% Similarity=0.281 Sum_probs=91.5
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCCCcchh
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPHMFVIK 143 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~~~vik 143 (279)
+.|++++++ ++||||+|++.. +.+.++.+|++|.||+|+|+|||++++||.+++. +|.+.++||+|.++ +
T Consensus 13 ~~~~~~v~~-~~tLLd~LR~~l----gl~g~k~gC~~G~CGaCtV~vdG~~v~SC~~~~~~~~G~~V~TiEgL~~~---~ 84 (166)
T 1n62_A 13 HPVEALVEP-RTLLIHFIREQQ----NLTGAHIGCDTSHCGACTVDLDGMSVKSCTMFAVQANGASITTIEGMAAP---D 84 (166)
T ss_dssp EEEEEEECT-TCBHHHHHHHTS----CCTTSCCCCSSSCSCTTEEEETTEEEEGGGSBGGGGTTCEEECGGGSSCT---T
T ss_pred EEEEEecCC-CCcHHHHHHHcC----CCCccccCCCCCCCCCCEEEECCcEEechhhhHHHhCCceEEEeCCCCCc---C
Confidence 678888888 899999999853 2467889999999999999999999999999997 67677888988642 0
Q ss_pred hhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHH
Q 023670 144 DLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANR 223 (279)
Q Consensus 144 DLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r 223 (279)
+ .+ .+.+...++ ..-.+||+|... .++.++.
T Consensus 85 ~----------~~----------------------~pvq~a~~~--~~~~QCG~CtpG---------------~imsa~a 115 (166)
T 1n62_A 85 G----------TL----------------------SALQEGFRM--MHGLQCGYCTPG---------------MIMRSHR 115 (166)
T ss_dssp S----------CC----------------------CHHHHHHHH--TTCCSSCSSHHH---------------HHHHHHH
T ss_pred C----------cc----------------------CHHHHHHHH--cCCccCCccchh---------------HHHHHHH
Confidence 0 00 111222222 224899999872 3455566
Q ss_pred HhhcCcchhHHHHHHHhhcccCccCchhhhhhhh
Q 023670 224 WISDSRDEYTKERLEAIDDEFKLYRCHTILNCAR 257 (279)
Q Consensus 224 ~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~ 257 (279)
++.+..+ .+++.++... ..++.+|+...++.+
T Consensus 116 ll~~~~~-pt~~eI~~~l-~gNlCRCtgY~~I~~ 147 (166)
T 1n62_A 116 LLQENPS-PTEAEIRFGI-GGNLCRCTGYQNIVK 147 (166)
T ss_dssp HHHHCSS-CCHHHHHHHT-TTCCCSSSTTHHHHH
T ss_pred HHHcCCC-CCHHHHHHHH-cCCccCCCCCHHHHH
Confidence 6554433 2334454332 246889988877655
No 13
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=99.29 E-value=1.4e-12 Score=108.90 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=67.1
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecccccccc--CCCCceEEeeCCC---Cc
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIS--PSGSASTITPLPH---MF 140 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~--~g~~~~~iepl~~---~~ 140 (279)
+.|++++++ ++||||+|++.. +...++.+|++|.||+|+|.|||++++||.+++. +|.+.++||+|.. +.
T Consensus 13 ~~~~v~v~p-~~tLLd~LR~~l----gltgtk~gC~~G~CGACtV~vdG~~v~sC~~~~~~~~G~~I~TiEgl~~~~~l~ 87 (160)
T 3hrd_D 13 EARSIVTEP-NKRLLDLLREDF----GLTSVKEGCSEGECGACTVIFNGDPVTTCCMLAGQADESTIITLEGVAEDGKPS 87 (160)
T ss_dssp EEEEEEECS-SSBHHHHHHTTS----CCTTSCCSSSSSSSCTTEEEETTEEEEGGGSBGGGGTTEEEECGGGTSBTTBCC
T ss_pred EEEEEecCC-CCCHHHHHHHhc----CCCccccccCCCCCCCCEEEECCEEEEchhhhhhhhCCCceEEeCCCCCCCccC
Confidence 668888888 899999999742 2356899999999999999999999999999998 6667789999974 22
Q ss_pred chhhhhhccchhhhh
Q 023670 141 VIKDLVVDMTNFYNQ 155 (279)
Q Consensus 141 vikDLvvD~~~~~~~ 155 (279)
.|+.-.++.+.+.+.
T Consensus 88 pvq~af~~~~~~QCG 102 (160)
T 3hrd_D 88 LLQQCFLEAGAVQCG 102 (160)
T ss_dssp HHHHHHHHHTCCSSC
T ss_pred HHHHHHHHcCCCcCC
Confidence 345555565555543
No 14
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=99.02 E-value=1.3e-10 Score=112.19 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=68.5
Q ss_pred EEEEE-eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE----CCeeecccccccc--CCCCceEEeeCCC
Q 023670 66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI----DGCNGLACLTKIS--PSGSASTITPLPH 138 (279)
Q Consensus 66 ~~~~v-~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i----nG~~~lAC~t~v~--~g~~~~~iepl~~ 138 (279)
+.|++ ++++ ++||||+|++++ + ..++.+|++|.||+|+|.| ||++++||.+++. +|.+.++||+|.+
T Consensus 10 ~~~~~~~~~~-~~~Ll~~Lr~~~--l---~g~k~gC~~G~CGaCtV~v~~~~~g~~v~sCl~~~~~~~g~~i~TiEgl~~ 83 (462)
T 2w3s_A 10 ETRRVRIEDP-TQSLLEWLRAEG--L---TGTKEGCNEGDCGACTVMIRDAAGSRAVNACLMMLPQIAGKALRTIEGIAA 83 (462)
T ss_dssp EEEEEECSCT-TCBHHHHHHHTT--C---TTSCCSCSSSSSCTTEEEEEETTEEEEEETTTCBGGGGTTCEEECGGGTSC
T ss_pred EEEEEecCCC-CCcHHHHHHHcC--C---CccCCCCCCCCcCCcEEEEEecCCCeEEEchhhhHHHhCCCcEEEECCCCC
Confidence 78889 8877 899999999444 2 3699999999999999999 9999999999999 5667889999974
Q ss_pred ----Ccchhhhhhccchhhhh
Q 023670 139 ----MFVIKDLVVDMTNFYNQ 155 (279)
Q Consensus 139 ----~~vikDLvvD~~~~~~~ 155 (279)
+..++.-.++.+.+.+.
T Consensus 84 ~~~~~~~~q~a~~~~~~~QCG 104 (462)
T 2w3s_A 84 PDGRLHPVQQAMIDHHGSQCG 104 (462)
T ss_dssp TTSCCCHHHHHHHHTTCCSSC
T ss_pred CCCCCCHHHHHHHHhCCCCCC
Confidence 23456666677665553
No 15
>1vlb_A Aldehyde oxidoreductase; iron-sulphur cluster; HET: PCD; 1.28A {Desulfovibrio gigas} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1 PDB: 1sij_A* 1zcs_A* 3fah_A* 3fc4_A* 3l4p_A*
Probab=98.96 E-value=2.9e-10 Score=117.84 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=70.1
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC---CCCceEEeeCCC---C
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP---SGSASTITPLPH---M 139 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~---g~~~~~iepl~~---~ 139 (279)
+.|++++++ ++||||+|++.. +.+.++.+|++|.||+|+|.|||++++||.+++.. |.+.++||+|.. +
T Consensus 11 ~~~~~~~~~-~~~ll~~Lr~~~----~l~g~k~gC~~g~CGaCtv~vdg~~~~sC~~~~~~~~~g~~i~Tiegl~~~~~~ 85 (907)
T 1vlb_A 11 IEQNLFVDA-EALLSDVLRQQL----GLTGVKVGCEQGQCGACSVILDGKVVRACVTKMKRVADGAQITTIEGVGQPENL 85 (907)
T ss_dssp EEEEEEECT-TSBHHHHHHHTT----CCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECHHHHCBTTBC
T ss_pred EEEEEecCC-CChHHHHHHHhc----CCCeecCCCCCCCcCccEEEECCeEeechHhHHHHHcCCCcEEEECCCCCCcCc
Confidence 678889888 899999999864 36789999999999999999999999999999873 456789999974 2
Q ss_pred cchhhhhhccchhhhhh
Q 023670 140 FVIKDLVVDMTNFYNQY 156 (279)
Q Consensus 140 ~vikDLvvD~~~~~~~~ 156 (279)
..++.-.++.+.+.+.|
T Consensus 86 ~~~q~a~~~~~~~qCG~ 102 (907)
T 1vlb_A 86 HPLQKAWVLHGGAQCGF 102 (907)
T ss_dssp CHHHHHHHHHTCCSSCT
T ss_pred CHHHHHHHHcCCCCCCc
Confidence 34566666776666543
No 16
>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*
Probab=98.95 E-value=3.3e-10 Score=94.62 Aligned_cols=82 Identities=18% Similarity=0.296 Sum_probs=64.9
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC----------Ceeecccccccc--CCCCceEEeeC
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----------GCNGLACLTKIS--PSGSASTITPL 136 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in----------G~~~lAC~t~v~--~g~~~~~iepl 136 (279)
.+++++ +++|||+||+... -...+.+|.+|.||+|+|.|| |+++.||.+++. +|.+.++||+|
T Consensus 16 ~~~~~p-~~~Ll~~LR~~lg----ltGtK~GC~~G~CGACTVlvd~~~~~~~~~~g~~v~SCl~~a~~~~G~~I~TiEGL 90 (164)
T 3nvw_A 16 EKNADP-ETTLLAYLRRKLG----LRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTTVEGI 90 (164)
T ss_dssp ETTCCT-TCBHHHHHHHTSC----CTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEECGGGT
T ss_pred EecCCC-CCCHHHHHHHHcC----CCCcCCCcCCCCCCCCEEEEccccccccccCCcEEehhhhhHHHhCCcceEEeccc
Confidence 567777 8999999998531 356889999999999999999 999999999998 67778899999
Q ss_pred CC----Ccchhhhhhccchhhhh
Q 023670 137 PH----MFVIKDLVVDMTNFYNQ 155 (279)
Q Consensus 137 ~~----~~vikDLvvD~~~~~~~ 155 (279)
.. +..|+.-.++.+.+.+.
T Consensus 91 ~~~~~~lhpvQ~af~~~~~~QCG 113 (164)
T 3nvw_A 91 GSTKTRLHPVQERIAKSHGSQCG 113 (164)
T ss_dssp CCTTSCCCHHHHHHHHTTCCSSC
T ss_pred CCCCCccCHHHHHHHHcCCCcCc
Confidence 64 23355556666665553
No 17
>1dgj_A Aldehyde oxidoreductase; beta half-barrel, four-helix bundle, beta barrel; HET: MCN; 2.80A {Desulfovibrio desulfuricans} SCOP: a.56.1.1 d.15.4.2 d.41.1.1 d.133.1.1
Probab=98.87 E-value=8.2e-10 Score=114.44 Aligned_cols=86 Identities=17% Similarity=0.344 Sum_probs=68.3
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccC---CCCceEEeeCCC---C
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISP---SGSASTITPLPH---M 139 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~---g~~~~~iepl~~---~ 139 (279)
+.|++++++ ++||||+|++.. +...++.+|++|.||+|+|.|||++++||.+++.. |.+.++||+|.+ +
T Consensus 11 ~~~~~~~~~-~~~ll~~Lr~~~----~l~g~k~gC~~G~CGaCtv~vdg~~v~sC~~~~~~~~~g~~i~TiEgl~~~~~~ 85 (907)
T 1dgj_A 11 MARRLLVSP-NDLLVDVLRSQL----QLTSVKVGCGKGQCGACTVILDGKVVRACIIKMSRVAENASVTTLEGIGAPDCL 85 (907)
T ss_dssp BCCEEEECT-TCBHHHHHHHTT----CCTTSCCSSSSSSSCTTEEEETTEEEEGGGCBGGGSCTTCEEECGGGTCBTTBC
T ss_pred EEEEEecCC-CCcHHHHHHHhc----CCCccCCCCCCCCcCceEEEECCeEeehhHhHHHHHcCCCcEEEECCCCCCccc
Confidence 456678888 899999999852 35789999999999999999999999999999973 456788999974 2
Q ss_pred cchhhhhhccchhhhhh
Q 023670 140 FVIKDLVVDMTNFYNQY 156 (279)
Q Consensus 140 ~vikDLvvD~~~~~~~~ 156 (279)
..++.-.++.+.+.+.|
T Consensus 86 ~~~q~a~~~~~~~qCG~ 102 (907)
T 1dgj_A 86 HPLQHAWIQHGAAQCGF 102 (907)
T ss_dssp CHHHHHHHHHTCCSSCT
T ss_pred CHHHHHHHHcCCCCCCc
Confidence 34566666766655543
No 18
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=98.63 E-value=4.9e-09 Score=107.22 Aligned_cols=74 Identities=18% Similarity=0.301 Sum_probs=52.5
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCCCh
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNP 265 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi~~ 265 (279)
..+.++|+.||.|+.+||.+.. +..+ ++....++.. . +.. ..+.|+.||+|..+||+++++
T Consensus 411 ~~~~~~Ci~CG~C~~~CP~~~~-------~~~i---l~~~~~G~~~----~---~~~--~~~~Ci~Cg~C~~vCP~ga~~ 471 (807)
T 3cf4_A 411 VNMVAKCADCGACLLACPEEID-------IPEA---MGFAKKGDFS----Y---FEE--IHDTCIGCRRCEQVCKKEIPI 471 (807)
T ss_dssp HHHHHHCCCCCHHHHHCTTCCC-------HHHH---HHHHHTTCTH----H---HHH--HHHHCCCCCHHHHHCTTCCCH
T ss_pred HHhHHhCCCCCchhhhCCCCCc-------hHHH---HHHHHcCChh----h---hhh--chhhccchhhHHHhCCCCCCh
Confidence 3467899999999999998741 1122 2222223211 1 111 257899999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 023670 266 GKQIINIKQLQLK 278 (279)
Q Consensus 266 ~~~I~~lR~~~~~ 278 (279)
.+++.++|+.+.+
T Consensus 472 ~~~i~~~r~~l~~ 484 (807)
T 3cf4_A 472 LNVIEKIAQKQIA 484 (807)
T ss_dssp HHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 19
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=98.60 E-value=6.2e-08 Score=73.20 Aligned_cols=57 Identities=30% Similarity=0.515 Sum_probs=44.6
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC-Ce-----------------eeccccccccCCCC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID-GC-----------------NGLACLTKISPSGS 129 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in-G~-----------------~~lAC~t~v~~g~~ 129 (279)
.+|++++ |+||||||++.|. . ...+|+.|.||+|.|+|+ |. .+|||.+.+..
T Consensus 13 ~~~~~~~-g~tlL~a~~~~gi-~-----i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~~--- 82 (95)
T 1frr_A 13 FTLDVPE-GTTILDAAEEAGY-D-----LPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPES--- 82 (95)
T ss_dssp EEEEECT-TCCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESS---
T ss_pred EEEEeCC-CCcHHHHHHHcCC-C-----CCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEECC---
Confidence 4566677 8999999999883 2 446789999999999997 73 47899999874
Q ss_pred ceEEe
Q 023670 130 ASTIT 134 (279)
Q Consensus 130 ~~~ie 134 (279)
.++|+
T Consensus 83 ~~~v~ 87 (95)
T 1frr_A 83 DLVIE 87 (95)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 25554
No 20
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=98.57 E-value=8.8e-08 Score=72.90 Aligned_cols=57 Identities=28% Similarity=0.458 Sum_probs=44.3
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS 129 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~ 129 (279)
.+|++++ |.||||||++.|. . ...+|+.|.||+|.|+| +|. .+|||.+.+..+
T Consensus 16 ~~~~~~~-g~tlL~a~~~~gi-~-----i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~~~~~d-- 86 (98)
T 1frd_A 16 TTIEIDE-ETTILDGAEENGI-E-----LPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSN-- 86 (98)
T ss_dssp EEEEEET-TSCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGCEESSS--
T ss_pred EEEEeCC-CCcHHHHHHHcCC-C-----cccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeECEECCC--
Confidence 3456667 8999999999883 2 44678999999999998 775 578999998742
Q ss_pred ceEEe
Q 023670 130 ASTIT 134 (279)
Q Consensus 130 ~~~ie 134 (279)
++|+
T Consensus 87 -~~v~ 90 (98)
T 1frd_A 87 -CTIK 90 (98)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 5555
No 21
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=98.51 E-value=2.1e-07 Score=70.80 Aligned_cols=54 Identities=24% Similarity=0.405 Sum_probs=42.0
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-------------------eecccccccc
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-------------------NGLACLTKIS 125 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-------------------~~lAC~t~v~ 125 (279)
..++|++++ |.||||||++.|. ....+|+.|.||+|.|+| +|. .+|||.+.+.
T Consensus 15 ~~~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq~~~~ 87 (98)
T 1jq4_A 15 ESLRFECRS-DEDVITAALRQNI------FLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPK 87 (98)
T ss_dssp EEEEEEEES-CCTHHHHHHHHTC------CCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTTCCSS
T ss_pred CcEEEEeCC-CChHHHHHHHcCC------CCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEeeCEEC
Confidence 345566667 8999999999873 245779999999999997 774 3678888886
Q ss_pred C
Q 023670 126 P 126 (279)
Q Consensus 126 ~ 126 (279)
.
T Consensus 88 ~ 88 (98)
T 1jq4_A 88 T 88 (98)
T ss_dssp C
T ss_pred C
Confidence 3
No 22
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=98.50 E-value=1.8e-07 Score=70.72 Aligned_cols=58 Identities=33% Similarity=0.476 Sum_probs=44.8
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCC
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSG 128 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~ 128 (279)
.++|++++ |.||||||++.|. ....+|+.|.||+|.|+| +|. .+|||.+.+..
T Consensus 11 ~~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~-- 81 (94)
T 1awd_A 11 EETIECPE-DTYILDAAEEAGL------DLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTS-- 81 (94)
T ss_dssp EEEEECCT-TSCHHHHHHHTTC------CCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESS--
T ss_pred cEEEEECC-CCcHHHHHHHcCC------CCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEECC--
Confidence 35677777 8999999999873 245789999999999998 774 36788888874
Q ss_pred CceEEe
Q 023670 129 SASTIT 134 (279)
Q Consensus 129 ~~~~ie 134 (279)
.++|+
T Consensus 82 -d~~i~ 86 (94)
T 1awd_A 82 -DVTIL 86 (94)
T ss_dssp -CEEEE
T ss_pred -CEEEE
Confidence 25554
No 23
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=98.48 E-value=1.9e-07 Score=70.98 Aligned_cols=57 Identities=30% Similarity=0.444 Sum_probs=44.2
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS 129 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~ 129 (279)
++|++++ |.||||||++.|. ....+|+.|.||+|.|+| +|. .+|||.+.+..
T Consensus 14 ~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~--- 83 (97)
T 1a70_A 14 VEFQCPD-DVYILDAAEEEGI------DLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVS--- 83 (97)
T ss_dssp EEEEEET-TSCHHHHHHHTTC------CCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEESS---
T ss_pred EEEEeCC-CCcHHHHHHHcCC------CcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEECC---
Confidence 5566677 8999999999873 245789999999999997 774 36799988874
Q ss_pred ceEEe
Q 023670 130 ASTIT 134 (279)
Q Consensus 130 ~~~ie 134 (279)
.++|+
T Consensus 84 d~~v~ 88 (97)
T 1a70_A 84 DVTIE 88 (97)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 25555
No 24
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=98.48 E-value=2e-07 Score=71.05 Aligned_cols=57 Identities=28% Similarity=0.465 Sum_probs=44.0
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS 129 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~ 129 (279)
++|++++ |.||||||++.|. ....+|+.|.||+|.|+| +|. .+|||.+.+..
T Consensus 14 ~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~--- 83 (98)
T 1iue_A 14 KKIECNE-DEYILDASERQNV------ELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPKS--- 83 (98)
T ss_dssp EEEEEET-TSCHHHHHHHTTC------CCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESS---
T ss_pred EEEEeCC-CCcHHHHHHHcCC------CCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEECC---
Confidence 4566667 8999999999873 245789999999999996 774 36899988874
Q ss_pred ceEEe
Q 023670 130 ASTIT 134 (279)
Q Consensus 130 ~~~ie 134 (279)
.++|+
T Consensus 84 d~~i~ 88 (98)
T 1iue_A 84 DCVIE 88 (98)
T ss_dssp CEEEE
T ss_pred CeEEE
Confidence 35555
No 25
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=98.43 E-value=3.3e-07 Score=69.79 Aligned_cols=57 Identities=28% Similarity=0.521 Sum_probs=43.4
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCCC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSGS 129 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~~ 129 (279)
.+|++++ |.||||||++.|. ....+|+.|.||+|.|+| +|. .+|||.+.+..+
T Consensus 16 ~~~~~~~-g~tlL~a~~~~gi------~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~d-- 86 (98)
T 1czp_A 16 HEIEVPD-DEYILDAAEEQGY------DLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSD-- 86 (98)
T ss_dssp EEEEEET-TSCHHHHHHHTTC------CCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESSC--
T ss_pred EEEEeCC-CCCHHHHHHHcCC------CccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeCEECCC--
Confidence 3456667 8999999999873 245789999999999997 674 367898888742
Q ss_pred ceEEe
Q 023670 130 ASTIT 134 (279)
Q Consensus 130 ~~~ie 134 (279)
++|+
T Consensus 87 -~~v~ 90 (98)
T 1czp_A 87 -VVIQ 90 (98)
T ss_dssp -EEEE
T ss_pred -EEEE
Confidence 5554
No 26
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=98.31 E-value=8.4e-07 Score=66.87 Aligned_cols=57 Identities=21% Similarity=0.482 Sum_probs=43.0
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe-----------------eeccccccccCCC
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC-----------------NGLACLTKISPSG 128 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~g~ 128 (279)
.++|++++ |.||||+|++.| . ...+|+.|.||+|.|.| +|. .+|||.+.+..
T Consensus 12 ~~~~~~~~-g~tlL~a~~~~g-~------i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~~-- 81 (93)
T 1wri_A 12 DITFDVEP-GERLIDIGSEKA-D------LPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPES-- 81 (93)
T ss_dssp EEEEEECT-TSCHHHHHHHHS-C------CCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESS--
T ss_pred eEEEEECC-CCcHHHHHHHCc-C------CCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEECC--
Confidence 35667777 899999999987 3 34678999999999997 673 25688877763
Q ss_pred CceEEe
Q 023670 129 SASTIT 134 (279)
Q Consensus 129 ~~~~ie 134 (279)
.++|+
T Consensus 82 -d~~v~ 86 (93)
T 1wri_A 82 -DVVIE 86 (93)
T ss_dssp -CEEEE
T ss_pred -CEEEE
Confidence 25554
No 27
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=98.21 E-value=2.6e-06 Score=65.85 Aligned_cols=56 Identities=18% Similarity=0.334 Sum_probs=39.6
Q ss_pred CceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEEC
Q 023670 45 TDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNID 113 (279)
Q Consensus 45 ~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~in 113 (279)
.+|++|.+. +|+. +.++|++++ |.|||+||++.|. .+|++ .+|+. |.||+|.|.|.
T Consensus 4 ~~m~~V~~~--~~~g------~~~~v~~~~-g~tLL~aa~~~gi-~i~~~---~~Cgg~G~CgtC~v~v~ 60 (108)
T 2bt6_A 4 GDKITVHFI--NRDG------ETLTTKGKI-GDSLLDVVVQNNL-DIDGF---GACEGTLACSTCHLIFE 60 (108)
T ss_dssp -CEEEEEEE--CTTS------CEEEEEEET-TCBHHHHHHHTTC-CCTTT---TTTSSSSSBSTTEEECC
T ss_pred CceEEEEEE--CCCC------CEEEEEECC-CChHHHHHHHcCC-CCCcc---cCCCCCcCcCCCEEEEC
Confidence 346666553 3332 345677777 9999999999984 34433 78976 99999999986
No 28
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=98.20 E-value=1.9e-06 Score=64.88 Aligned_cols=54 Identities=19% Similarity=0.453 Sum_probs=41.6
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC-Ce------------------eecccccccc
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID-GC------------------NGLACLTKIS 125 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in-G~------------------~~lAC~t~v~ 125 (279)
+.++|++++ |.||||+|++.+. . ....+|+ .|.||+|.|.|. |. .+|||.+.+.
T Consensus 10 ~~~~~~~~~-g~tll~a~~~~gi-~----gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~~~~~g~rLaCq~~~~ 83 (93)
T 1l5p_A 10 VKKQLKFED-DQTLFTVLTEAGL-M----SADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLEDQPANARLACAITLS 83 (93)
T ss_dssp EEEEEECCT-TEEHHHHHHTTTS-S----CCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHTTSCTTEEEGGGCEEC
T ss_pred cEEEEEECC-CChHHHHHHHcCC-C----cCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhcCCCCCcEEeeECEEC
Confidence 556778888 9999999999873 1 1457798 899999999984 42 2568887776
No 29
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=98.17 E-value=3.6e-06 Score=64.47 Aligned_cols=41 Identities=24% Similarity=0.467 Sum_probs=32.8
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG 114 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG 114 (279)
.++|++++ |.||||||++.|.. ...+|+ .|.||+|.|.|.+
T Consensus 15 ~~~~~~~~-g~tlL~a~~~~gi~------i~~~C~g~G~Cg~C~v~v~~ 56 (103)
T 2wlb_A 15 EIMIEGNE-GDSILDLAHANNID------LEGACEGSVACSTCHVIVDP 56 (103)
T ss_dssp EEEEEECT-TCBHHHHHHHTTCC------CCCTTTTSSCCSTTEEEECH
T ss_pred EEEEEECC-CCHHHHHHHHcCCC------cCcCCCCCCCcCCCEEEECC
Confidence 35567777 89999999998732 346798 7999999999864
No 30
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=98.08 E-value=6.7e-06 Score=63.68 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=32.3
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCC-CccCeeEEEEC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCRE-GICGSCAMNID 113 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~-g~CG~C~v~in 113 (279)
+.++|++++ |.|||+|+++.|. .. ..+|+. |.||+|.|.|.
T Consensus 16 ~~~~~~~~~-g~tlL~aa~~~gi-~i-----~~~C~g~G~CgtC~v~v~ 57 (109)
T 2y5c_A 16 QRIPVSGRV-GDNVLHLAQRHGV-DL-----EGACEASLACSTCHVYVS 57 (109)
T ss_dssp CEEEEEEET-TCBHHHHHHHTTC-CC-----CCTTSSSSSCCTTEEEEC
T ss_pred CEEEEEECC-CCcHHHHHHHcCC-CC-----CcCCCCCcCcCccEEEEC
Confidence 345667777 8999999999884 23 367977 99999999974
No 31
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=98.04 E-value=6e-07 Score=74.91 Aligned_cols=107 Identities=20% Similarity=0.336 Sum_probs=37.6
Q ss_pred cchhhhhhccchhhhhhhccccccccCCCCCCCCCCCCCChhhHhhhcccccCcccCcccCCCCCcccCCC-cccCHHHH
Q 023670 140 FVIKDLVVDMTNFYNQYKSIEPWLKRKNPPPMPGKEIPQSKKDRAKLDGMYECILCACCSTSCPSYWWTSE-AYLGPAAL 218 (279)
Q Consensus 140 ~vikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~-~~~gP~~l 218 (279)
.++++|.++..+++.+...+. |-......+...+.. +.......+.++||.||.|+.+||.....-. ....+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~t~~-yp~~~~~~~~~~~g~---~~~~~~~~d~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~-- 78 (182)
T 3i9v_9 5 ALAQSLGITLKYLFSKPVTVP-YPDAPVALKPRFHGR---HVLTRHPNGLEKCIGCSLCAAACPAYAIYVEPAENDPE-- 78 (182)
T ss_dssp ----------------------CCSSCEECCTTCCCS---EEECBCTTSCBSCCCCCHHHHHCTTCCEEEEEECCCSS--
T ss_pred HHHHHHHHHHHHHcCCCcceE-CCCCCCCCCcccCCe---EeeccCCCCCccCcccccchhhCCcccEEeeccccccc--
Confidence 467888888888877543332 111000000000000 0000111246799999999999997532100 000000
Q ss_pred HHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 219 LHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 219 ~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.....+... . .......+.|+.||.|+.+||.++
T Consensus 79 ----~~~~~~~~~------~-~~~~~~~~~C~~C~~C~~~CP~~A 112 (182)
T 3i9v_9 79 ----NPVSAGERY------A-KVYEINMLRCIFCGLCEEACPTGA 112 (182)
T ss_dssp ----SCSSSSSCE------E-EEEEEETTTCCCCCHHHHHCSSSC
T ss_pred ----ccccccccc------c-ceeecCCCcCcChhChhhhCCccc
Confidence 000000000 0 000124678999999999999985
No 32
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=98.00 E-value=1.5e-05 Score=61.35 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=34.1
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG 114 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG 114 (279)
+.++|++.+ |.|||+||++.+... ...+|+ .|.||+|.|.|..
T Consensus 11 ~~~~~~~~~-g~tll~a~~~~gi~~-----i~~~C~G~G~CgtC~v~v~~ 54 (104)
T 3lxf_A 11 TRTEIQAEP-GLSLMEALRDAGIDE-----LLALCGGCCSCATCHVLVAP 54 (104)
T ss_dssp CEEEEECCT-TSBHHHHHHHTTCTT-----CCCTTCSSSSCSTTEEEECG
T ss_pred CEEEEEECC-CChHHHHHHHcCCCC-----CCcCCCCCCCCCCCEEEECC
Confidence 466788888 999999999987421 336898 8999999999753
No 33
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=97.99 E-value=1e-05 Score=64.79 Aligned_cols=39 Identities=31% Similarity=0.638 Sum_probs=31.6
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CC
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DG 114 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG 114 (279)
++++++ |.|||+||++.|. . ...+|+.|.||+|.|.| +|
T Consensus 39 ~v~v~~-g~tlL~aa~~~Gi-~-----i~~~C~~G~CgtC~v~v~~G 78 (128)
T 1doi_A 39 SLEVNE-GEYILEAAEAQGY-D-----WPFSCRAGACANCAAIVLEG 78 (128)
T ss_dssp EEECCT-TSCHHHHHHHTTC-C-----CCCSSSSSSSSTTEEEEEES
T ss_pred EEEECC-CCcHHHHHHHcCC-C-----CccCCCccCCCCCEeEEecC
Confidence 456667 8999999999883 2 44678999999999997 55
No 34
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=97.97 E-value=9.2e-06 Score=63.25 Aligned_cols=39 Identities=18% Similarity=0.393 Sum_probs=31.0
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC-C
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID-G 114 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in-G 114 (279)
+|++++ |.||||||++.|. .+ ..+|+ .|.||+|.|+|. |
T Consensus 18 ~v~~~~-g~tlL~aa~~~Gi-~i-----~~~C~g~G~CgtC~v~v~~G 58 (113)
T 3ah7_A 18 TVEVKP-GTNILELAHDHHI-EM-----ESACGGVKACTTCHCIVRKG 58 (113)
T ss_dssp EEECCT-TCBHHHHHHHTTC-CC-----CCTTCSSSSCSTTEEEEEES
T ss_pred EEEECC-CCcHHHHHHHcCC-CC-----CcCCCCCCCcCCCEEEEcCC
Confidence 456667 8999999999984 23 36797 699999999974 5
No 35
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=97.96 E-value=1.2e-05 Score=61.90 Aligned_cols=41 Identities=15% Similarity=0.443 Sum_probs=32.1
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID 113 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in 113 (279)
..+|++++ |.||||||++.|. . ....+|+ .|.||+|.|.|.
T Consensus 12 ~~~~~~~~-g~tlLeaa~~~gi-~----~i~~~C~g~G~CgtC~v~v~ 53 (106)
T 1xlq_A 12 RRELDVAD-GVSLMQAAVSNGI-Y----DIVGDCGGSASCATCHVYVN 53 (106)
T ss_dssp EEEEECCT-TCBHHHHHHHTTC-T----TSCCTTCSSSSSCTTEEEEC
T ss_pred EEEEEECC-CCcHHHHHHHcCC-C----CCCcCCCCCcccCcCEEEEC
Confidence 45677777 8999999999984 2 1346785 799999999974
No 36
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=97.95 E-value=4.2e-06 Score=89.77 Aligned_cols=85 Identities=18% Similarity=0.279 Sum_probs=65.9
Q ss_pred EEEEE-eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC----------Ceeecccccccc--CCCCceE
Q 023670 66 KEFEI-NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID----------GCNGLACLTKIS--PSGSAST 132 (279)
Q Consensus 66 ~~~~v-~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in----------G~~~lAC~t~v~--~g~~~~~ 132 (279)
+.+++ ++++ .+||||+||+... -...+.+|.+|.||+|+|.|| |+++.||.+++. +|.+.+|
T Consensus 13 ~~~~~~~~~p-~~~ll~~LR~~~~----ltgtk~gC~~g~CGaCtV~~~~~~~~~~~~~~~~v~sCl~~~~~~~g~~i~T 87 (1332)
T 3unc_A 13 KKVVEKNADP-ETTLLAYLRRKLG----LRGTKLGCGEGGCGACTVMLSKYDRLQDKIIHFSANACLAPICTLHHVAVTT 87 (1332)
T ss_dssp EEEEETTCCT-TCBHHHHHHHTSC----CTTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEEC
T ss_pred EEEEeecCCC-CCCHHHHHhhhcC----CCCcCCCcCCCCCCCcEEEEecccccccccCCeEeehHHhhHHHhCCCEEEE
Confidence 45665 6777 7999999998431 245788999999999999995 889999999998 6778889
Q ss_pred EeeCCC----Ccchhhhhhccchhhhh
Q 023670 133 ITPLPH----MFVIKDLVVDMTNFYNQ 155 (279)
Q Consensus 133 iepl~~----~~vikDLvvD~~~~~~~ 155 (279)
||.|.+ +..|+.-.++.+.+.+.
T Consensus 88 iEgl~~~~~~~hpvq~a~~~~~~~QCG 114 (1332)
T 3unc_A 88 VEGIGSTKTRLHPVQERIAKSHGSQCG 114 (1332)
T ss_dssp GGGTCCTTSCCCHHHHHHHHTTCCSSC
T ss_pred eccccCCCCCcCHHHHHHHHhCCCCCC
Confidence 999964 23456666777665553
No 37
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=97.95 E-value=1e-05 Score=62.85 Aligned_cols=38 Identities=18% Similarity=0.471 Sum_probs=30.4
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCccCeeEEEEC
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGICGSCAMNID 113 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~CG~C~v~in 113 (279)
+|++++ |.||||||++.|. . ...+| +.|.||+|.|.|.
T Consensus 18 ~~~~~~-g~tlL~a~~~~gi-~-----i~~~C~~~G~Cg~C~v~v~ 56 (111)
T 1i7h_A 18 VLEANS-GETILDAALRNGI-E-----IEHACEKSCACTTCHCIVR 56 (111)
T ss_dssp EEECCT-TCBHHHHHHHTTC-C-----CCCTTSSSSCCSTTEEEEE
T ss_pred EEEeCC-CCcHHHHHHHcCC-C-----CcccCCCCCcCCCCEEEEc
Confidence 456667 8999999999873 2 34679 5899999999975
No 38
>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=97.94 E-value=1.5e-05 Score=72.88 Aligned_cols=53 Identities=28% Similarity=0.465 Sum_probs=42.4
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCee---------------------eccccccc
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGCN---------------------GLACLTKI 124 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~~---------------------~lAC~t~v 124 (279)
.++|++++ |.|||||++++|. . ...+|+.|.||+|.|+| +|.. +|||.+.+
T Consensus 15 ~~~~~~~~-g~tll~a~~~~gi-~-----i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~LaCq~~~ 87 (338)
T 1krh_A 15 TRFICIAQ-GETLSDAAYRQQI-N-----IPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRP 87 (338)
T ss_dssp EEEEEECT-TCCHHHHHHHTTC-C-----CSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEETTTCEE
T ss_pred cEEEEeCC-CCcHHHHHHHcCC-C-----cccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeEEEEeCEE
Confidence 34566777 8999999999984 2 34678999999999998 7742 68999998
Q ss_pred cC
Q 023670 125 SP 126 (279)
Q Consensus 125 ~~ 126 (279)
..
T Consensus 88 ~~ 89 (338)
T 1krh_A 88 TS 89 (338)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 39
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=97.89 E-value=7.8e-06 Score=62.77 Aligned_cols=41 Identities=12% Similarity=0.521 Sum_probs=32.0
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDG 114 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG 114 (279)
.+|++++ |.|||+||++.|.. ....+|+ .|.||+|.|.|.+
T Consensus 13 ~~~~~~~-g~tlL~aa~~~gi~-----~i~~~C~g~G~CgtC~v~v~~ 54 (105)
T 1b9r_A 13 YAVDAQD-GQSLMEVATQNGVP-----GIVAECGGSCVCATCRIEIED 54 (105)
T ss_dssp EEEECCT-TCCTTHHHHHHTCC-----CCCCSSTTSSCCCCCCCEECT
T ss_pred EEEEECC-CChHHHHHHHcCCC-----CcCcCCCCCCCcCcCEEEECC
Confidence 4567777 89999999999842 1346798 6999999999853
No 40
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=97.86 E-value=3.6e-05 Score=61.40 Aligned_cols=56 Identities=18% Similarity=0.412 Sum_probs=39.5
Q ss_pred CCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670 44 NTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID 113 (279)
Q Consensus 44 ~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in 113 (279)
...|.+|.+. +|+. +..+|++.+ |.||||||++.+..- ...+|+ .|.||+|.|.|.
T Consensus 18 ~~~M~~Vt~~--~~~G------~~~~v~~~~-G~tLL~aa~~~gi~g-----i~~~C~G~G~CgtC~v~v~ 74 (126)
T 3hui_A 18 GSHMAKINFV--DHTG------ETRTVEVEE-GATVMEAAIRNAIPG-----VEAECGGACACATCHVYVD 74 (126)
T ss_dssp TCSEEEEEEE--CTTS------CEEEEEEET-TSBHHHHHHTTTCTT-----CCCTTSSSSCCSTTEEEEC
T ss_pred CCCceEEEEE--eCCC------CEEEEEECC-CCcHHHHHHHcCCCC-----CccCCCCCCCCCCCEEEEC
Confidence 3456666553 3432 345677777 899999999987420 336797 799999999975
No 41
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=97.85 E-value=1.6e-05 Score=61.04 Aligned_cols=41 Identities=22% Similarity=0.414 Sum_probs=32.1
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID 113 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in 113 (279)
..+|++++ |.||||||++.|. . ....+|+ .|.||+|.|.|.
T Consensus 12 ~~~~~~~~-g~tlL~aa~~~gi-~----~i~~~C~g~G~CgtC~v~v~ 53 (106)
T 1uwm_A 12 RHEVEAKP-GLTVMEAARDNGV-P----GIDADCGGACACSTCHAYVD 53 (106)
T ss_dssp EEEEECCT-TSBHHHHHHTTTC-T----TCCCTTSSSSSSCTTEEEEC
T ss_pred EEEEEECC-CCcHHHHHHHcCC-C----CcccCCCCCCCcCcCEEEEC
Confidence 45677777 8999999999884 2 1346795 799999999975
No 42
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=97.61 E-value=2.9e-06 Score=61.07 Aligned_cols=56 Identities=23% Similarity=0.470 Sum_probs=34.5
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+..+|+.||.|+.+||.......+. ++.... .+........|+.||.|+.+||.++
T Consensus 6 ~~~~C~~Cg~C~~~CP~~a~~~~~~--------------~~~~~~------~~~~~~~~~~C~~Cg~C~~~CP~~a 61 (80)
T 1jb0_C 6 IYDTCIGCTQCVRACPTDVLEMVPW--------------DGCKAG------QIASSPRTEDCVGCKRCETACPTDF 61 (80)
T ss_dssp EETTCCCCCHHHHHCTTCCCEEEEC--------------SSSTTS------EEEECTTGGGCCCCCHHHHHCCSSS
T ss_pred cCCcCcChhHHHHHCCccccccccc--------------cccccc------ccccCCCCCcCcCcCChhhhCCCCc
Confidence 4578999999999999643210000 000000 0101123578999999999999985
No 43
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=97.58 E-value=1e-05 Score=61.21 Aligned_cols=59 Identities=17% Similarity=0.294 Sum_probs=35.5
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+..+|+.||.|+.+||.......+.. +..... ..........|+.||.|+.+||+++
T Consensus 39 ~id~~~C~~Cg~C~~~CP~~ai~~~~~~--------------~~~~~~-----~~~~~~~~~~C~~Cg~C~~~CP~~A 97 (103)
T 1xer_A 39 GVDFDLCIADGSCINACPVNVFQWYDTP--------------GHPASE-----KKADPVNEQACIFCMACVNVCPVAA 97 (103)
T ss_dssp EEETTTCCCCCHHHHHCTTCCCEEEECT--------------TCSSCS-----EEEECTTGGGCCCCCHHHHHCTTCC
T ss_pred EEehhhCCChhhHHHHcCccCeeccccc--------------Cccccc-----cceeecCcccccChhhHHHhccccc
Confidence 3456789999999999996432100000 000000 0000124578999999999999985
No 44
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=97.58 E-value=2.6e-05 Score=52.19 Aligned_cols=47 Identities=30% Similarity=0.609 Sum_probs=32.9
Q ss_pred cccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 189 MYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 189 ~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
..+|+.||.|+.+||...... .++. . ......|+.||.|..+||+++
T Consensus 5 ~~~C~~C~~C~~~CP~~ai~~----------------~~~~----------~--~~~~~~C~~C~~C~~~CP~~a 51 (55)
T 2fdn_A 5 NEACISCGACEPECPVNAISS----------------GDDR----------Y--VIDADTCIDCGACAGVCPVDA 51 (55)
T ss_dssp CTTCCCCCTTGGGCTTCCEEC----------------CSSS----------C--EECTTTCCCCCHHHHTCTTCC
T ss_pred cccCcChhhHHHHCCccccCc----------------CCCE----------E--EeccccCcChhChHHHccccc
Confidence 467999999999999643210 0000 0 113567999999999999985
No 45
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=97.52 E-value=9.8e-05 Score=53.25 Aligned_cols=48 Identities=23% Similarity=0.513 Sum_probs=33.0
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARACPK 261 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vCP~ 261 (279)
+..+|+.||.|+.+||..... + .++. . ......|+.|| .|+.+||.
T Consensus 4 ~~~~C~~C~~C~~~CP~~ai~---------------~-~~~~----------~--~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (80)
T 1rgv_A 4 INDDCTACDACVEECPNEAIT---------------P-GDPI----------Y--VIDPTKCSECVGAFDEPQCRLVCPA 55 (80)
T ss_dssp CCSCCCCCCTTTTTCTTCCEE---------------C-CSSS----------C--EECTTTCCTTTTTCSSCHHHHHCSS
T ss_pred eCCCCcChhhHHHHcChhccC---------------c-CCCe----------e--EEcchhCcCCCCcCCccHHHHhcCc
Confidence 457899999999999964211 0 0000 0 11346799999 99999998
Q ss_pred CC
Q 023670 262 GL 263 (279)
Q Consensus 262 gi 263 (279)
++
T Consensus 56 ~A 57 (80)
T 1rgv_A 56 DC 57 (80)
T ss_dssp CC
T ss_pred cc
Confidence 73
No 46
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=97.51 E-value=3.4e-05 Score=51.99 Aligned_cols=51 Identities=22% Similarity=0.471 Sum_probs=33.1
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+..+|+.||.|+.+||.....+ .++.. .+.+ ....|..||.|+.+||+++
T Consensus 5 i~~~~C~~C~~C~~~Cp~~~~~~----------------~~~~~--------~~~~--~~~~c~~C~~C~~~CP~~A 55 (60)
T 1rof_A 5 VDADACIGCGVCENLCPDVFQLG----------------DDGKA--------KVLQ--PETDLPCAKDAADSCPTGA 55 (60)
T ss_dssp ECTTTCCSCCSSTTTCTTTBCCC----------------SSSCC--------CBSC--SSCCSTTHHHHHHHCTTCC
T ss_pred EchhhCCCChHHHHhCcHHHeEC----------------CCCCE--------eecC--chhhHHHHHHHHHhCCHhH
Confidence 35578999999999999521100 00110 0100 2467999999999999985
No 47
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=97.48 E-value=0.00011 Score=53.27 Aligned_cols=47 Identities=21% Similarity=0.537 Sum_probs=32.4
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARACPK 261 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vCP~ 261 (279)
+..+|+.||.|+.+||..... .+... . ......|+.|| .|+.+||.
T Consensus 4 ~~~~C~~C~~C~~~CP~~ai~-----------------~~~~~---------~--~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (82)
T 2fgo_A 4 ITDDCINCDVCEPECPNGAIS-----------------QGEEI---------Y--VIDPNLCTECVGHYDEPQCQQVCPV 55 (82)
T ss_dssp CCTTCCCCCTTGGGCTTCCEE-----------------ECSSS---------E--EECTTTCCTTTTTCSSCHHHHHCTT
T ss_pred eCCCCCChhhHHHHCChhccC-----------------CCCCe---------E--EEEchhCccCCCcCCCCHhHhhCCc
Confidence 457899999999999964211 00000 0 11346799999 99999998
Q ss_pred C
Q 023670 262 G 262 (279)
Q Consensus 262 g 262 (279)
+
T Consensus 56 ~ 56 (82)
T 2fgo_A 56 D 56 (82)
T ss_dssp C
T ss_pred c
Confidence 7
No 48
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=97.42 E-value=4e-05 Score=51.47 Aligned_cols=51 Identities=20% Similarity=0.392 Sum_probs=32.7
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+..+|+.||.|+.+||... . + + ..++... +. .....|+.||.|+.+||+++
T Consensus 5 ~~~~C~~C~~C~~~Cp~~~-~---~-~----------~~~~~~~--------~~--~~~~~c~~C~~C~~~CP~~A 55 (59)
T 1dwl_A 5 DHEECIGCESCVELCPEVF-A---M-I----------DGEEKAM--------VT--APDSTAECAQDAIDACPVEA 55 (59)
T ss_dssp SSCCCSSCCGGGGTSTTTE-E---E-E----------ECSSCEE--------ES--CTTCCCGGGGTGGGGSTTCC
T ss_pred ChhhCcChhHHHHHCCHHh-e---e-c----------CCCCcEE--------Ee--cChhhhhHHHHHHHhCCHhh
Confidence 4578999999999999421 1 0 0 0001100 00 13467999999999999975
No 49
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=97.41 E-value=0.0001 Score=53.86 Aligned_cols=47 Identities=23% Similarity=0.600 Sum_probs=32.4
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARACPK 261 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vCP~ 261 (279)
+..+|+.||.|+.+||..... .+... . ......|+.|| .|+.+||.
T Consensus 4 ~~~~C~~C~~C~~~CP~~ai~-----------------~~~~~---------~--~~~~~~C~~C~~~~~~~~C~~~CP~ 55 (85)
T 2zvs_A 4 ITKKCINCDMCEPECPNEAIS-----------------MGDHI---------Y--EINSDKCTECVGHYETPTCQKVCPI 55 (85)
T ss_dssp ECTTCCCCCTTTTTCTTCCEE-----------------CCSSS---------C--EECGGGCCTTTTTCSSCHHHHHCSS
T ss_pred eCCcCcChhHHHHHCchhccC-----------------cCCCc---------e--EEeChhccCCCCcCCccHhhHhCcC
Confidence 457899999999999964321 00000 0 11346799999 99999999
Q ss_pred -C
Q 023670 262 -G 262 (279)
Q Consensus 262 -g 262 (279)
+
T Consensus 56 ~~ 57 (85)
T 2zvs_A 56 PN 57 (85)
T ss_dssp CC
T ss_pred CC
Confidence 5
No 50
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=97.39 E-value=3.2e-05 Score=52.04 Aligned_cols=49 Identities=14% Similarity=0.445 Sum_probs=31.8
Q ss_pred ccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 190 YECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 190 ~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+|+.||.|+.+||.....+ .++... .+. . ....|+.||.|+.+||+++
T Consensus 6 ~~C~~C~~C~~~CP~~~~~~----------------~~~~~~-------~~~-~-~~~~C~~C~~C~~~CP~~A 54 (58)
T 1f2g_A 6 DDCMACEACVEICPDVFEMN----------------EEGDKA-------VVI-N-PDSDLDCVEEAIDSCPAEA 54 (58)
T ss_dssp TTCCCCCHHHHHCTTTEEEC----------------SSSSSE-------EES-C-TTCCSTHHHHHHHTCSSCC
T ss_pred CcCccchHHHHhCCccEEEC----------------CCCcEE-------EeC-C-CccchHHHHHHHhhCChhh
Confidence 78999999999999621000 000000 011 0 1467999999999999985
No 51
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=97.38 E-value=6.1e-05 Score=54.77 Aligned_cols=48 Identities=25% Similarity=0.556 Sum_probs=33.2
Q ss_pred ccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh------hhhhhCCC
Q 023670 188 GMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL------NCARACPK 261 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg------~C~~vCP~ 261 (279)
+..+|+.||.|+.+||..... + .++. . ......|+.|| .|+.+||.
T Consensus 4 ~~~~C~~C~~C~~~CP~~ai~---------------~-~~~~----------~--~i~~~~C~~C~~~~~~~~C~~~CP~ 55 (82)
T 3eun_A 4 ITDECINCDVCEPECPNGAIS---------------Q-GDET----------Y--VIEPSLCTECVGHYETSQCVEVCPV 55 (82)
T ss_dssp ECTTCCCCCTTGGGCTTCCEE---------------E-CSSS----------E--EECGGGCCTTTTTCSSCHHHHHCTT
T ss_pred eCCCCcCccchHHHCChhheE---------------c-CCCc----------e--EEchhhcCCCCCCCCccHHHHhCCc
Confidence 457899999999999964211 0 0000 0 11346799999 99999998
Q ss_pred CC
Q 023670 262 GL 263 (279)
Q Consensus 262 gi 263 (279)
++
T Consensus 56 ~A 57 (82)
T 3eun_A 56 DA 57 (82)
T ss_dssp CC
T ss_pred cc
Confidence 85
No 52
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=97.29 E-value=7e-05 Score=71.23 Aligned_cols=53 Identities=21% Similarity=0.412 Sum_probs=36.3
Q ss_pred hhhcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhccc-CccCchhhhhhhhhCCCC
Q 023670 184 AKLDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEF-KLYRCHTILNCARACPKG 262 (279)
Q Consensus 184 ~~~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~-~~~~C~~Cg~C~~vCP~g 262 (279)
....+..+||.||.|+.+||...... .++.. ... ....|+.||.|+.+||.+
T Consensus 27 ~i~~d~~kCi~Cg~C~~~CP~~ai~~----------------~~~~~-----------~~i~~~~~C~~Cg~C~~~CP~~ 79 (421)
T 1hfe_L 27 FVQIDEAKCIGCDTCSQYCPTAAIFG----------------EMGEP-----------HSIPHIEACINCGQCLTHCPEN 79 (421)
T ss_dssp SEEECTTTCCCCCHHHHHCTTCCCBC----------------CTTSC-----------CBCCCGGGCCCCCTTGGGCTTC
T ss_pred eEEECcccCCCccHHHHhcCcCceec----------------ccccc-----------eeecChhhCCchhhHHHhhCcC
Confidence 34566789999999999999642110 00000 011 346799999999999998
Q ss_pred C
Q 023670 263 L 263 (279)
Q Consensus 263 i 263 (279)
+
T Consensus 80 A 80 (421)
T 1hfe_L 80 A 80 (421)
T ss_dssp C
T ss_pred C
Confidence 5
No 53
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=97.28 E-value=0.00014 Score=51.95 Aligned_cols=48 Identities=21% Similarity=0.327 Sum_probs=33.1
Q ss_pred ccccCcc--cCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECIL--CACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~--CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+..+|+. ||.|+.+||..... .+... . ......|+.||.|+.+||.++
T Consensus 4 ~~~~C~~c~C~~C~~~Cp~~ai~-----------------~~~~~---------~--~~~~~~C~~Cg~C~~~CP~~a 53 (77)
T 1bc6_A 4 ITEPCIGTKDASCVEVCPVDCIH-----------------EGEDQ---------Y--YIDPDVCIDCGACEAVCPVSA 53 (77)
T ss_dssp CCSTTTTCCCCSSTTTCTTCCEE-----------------ECSSS---------E--EECTTTCCSCCSHHHHSGGGS
T ss_pred eCccCCCCCcchhHHhcccccEE-----------------eCCCc---------E--EECcccCcCccCCHhhcCccc
Confidence 4578999 99999999964211 00000 0 113467999999999999874
No 54
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=97.24 E-value=5.4e-05 Score=57.81 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=33.4
Q ss_pred ccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+..+|+.|| .|+.+||..... .+... + ......|+.||.|+.+||.++
T Consensus 4 ~~~~C~~C~~~~C~~~CP~~ai~-----------------~~~~~---------~--~i~~~~C~~Cg~C~~~CP~~a 53 (106)
T 7fd1_A 4 VTDNCIKCKYTDCVEVCPVDCFY-----------------EGPNF---------L--VIHPDECIDCALCEPECPAQA 53 (106)
T ss_dssp ECGGGTTTCCCHHHHHCTTCCEE-----------------ECSSC---------E--EECTTTCCCCCTTGGGCTTCC
T ss_pred CccccCCccCcHHHHHcCccceE-----------------cCCCc---------E--EECcccCCChhhhHHhCCChh
Confidence 457899999 999999964311 00000 0 113467999999999999886
No 55
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=97.23 E-value=5.9e-05 Score=51.86 Aligned_cols=52 Identities=17% Similarity=0.330 Sum_probs=32.9
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhc-CcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISD-SRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d-~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+..+|+.||.|+.+|| ..+. +..+ +... +.+ .....|..||.|+.+||+++
T Consensus 6 id~~~C~~Cg~C~~~CP-~~~~---------------~~~~~~~~~--------~~~-~~~~~C~~C~~C~~~CP~~A 58 (64)
T 1dax_A 6 VDQDECIACESCVEIAP-GAFA---------------MDPEIEKAY--------VKD-VEGASQEEVEEAMDTCPVQC 58 (64)
T ss_dssp ECSTTCCSCCHHHHHCT-TTEE---------------ECSSSSSEE--------ECC-GGGSCHHHHHHHHHHSSSCC
T ss_pred EccccCCCchHHHHhCC-ccEe---------------EcCCCCEEE--------Eec-CCCcchhHHHHHHHhCCHhh
Confidence 35578999999999999 3211 0000 0100 000 12467999999999999985
No 56
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=97.02 E-value=0.00011 Score=52.74 Aligned_cols=48 Identities=21% Similarity=0.315 Sum_probs=33.2
Q ss_pred ccccCcc--cCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECIL--CACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~--CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+..+|+. ||.|+.+||..... + .++. + ......|+.||.|+.+||.++
T Consensus 4 ~~~~C~~c~C~~C~~~CP~~ai~---------------~-~~~~----------~--~~~~~~C~~C~~C~~~CP~~A 53 (78)
T 1h98_A 4 ICEPCIGVKDQSCVEVCPVECIY---------------D-GGDQ----------F--YIHPEECIDCGACVPACPVNA 53 (78)
T ss_dssp ECGGGTTTCCCHHHHHCTTCCEE---------------E-CSSS----------E--EECTTTCCCCCTHHHHCTTCC
T ss_pred EchhCCCCCcChhhhhcCccceE---------------c-CCCE----------E--EECcccCCcHhHHHHhCCccc
Confidence 4578999 99999999964211 0 0000 0 113467999999999999985
No 57
>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2
Probab=96.97 E-value=0.00051 Score=62.39 Aligned_cols=39 Identities=26% Similarity=0.596 Sum_probs=31.0
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE-CCe
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI-DGC 115 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i-nG~ 115 (279)
+++++ |.||||||.+.|. ....+|+.|+||+|.|+| .|.
T Consensus 249 ~~~~~-~~~ll~a~~~~g~------~~~~~C~~G~Cg~C~~~v~~G~ 288 (321)
T 2pia_A 249 FEIPA-NRSILEVLRDANV------RVPSSCESGTCGSCKTALCSGE 288 (321)
T ss_dssp EEECT-TSCHHHHHHHTTC------CCCCSCSSSSSCTTEEEEEESC
T ss_pred EEECC-CCcHHHHHHHcCC------CCCCCCCCCCCCCCEEEEecCc
Confidence 44456 8999999999983 245789999999999986 453
No 58
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=96.92 E-value=0.00012 Score=53.05 Aligned_cols=18 Identities=11% Similarity=0.301 Sum_probs=15.8
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|..|+.|+.+||+++
T Consensus 48 ~~~c~~C~~C~~~CP~~A 65 (81)
T 1iqz_A 48 DILIDDMMDAFEGCPTDS 65 (81)
T ss_dssp GGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHHHHhCCHhH
Confidence 357999999999999986
No 59
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=96.88 E-value=0.00017 Score=54.67 Aligned_cols=48 Identities=19% Similarity=0.367 Sum_probs=33.1
Q ss_pred ccccCccc--CcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 188 GMYECILC--ACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 188 ~~~~CI~C--G~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+..+|+.| |.|+.+||..... .+... . ......|+.||.|+.+||.++
T Consensus 4 ~~~~C~~C~c~~C~~~CP~~ai~-----------------~~~~~---------~--~~~~~~C~~Cg~C~~~CP~~A 53 (105)
T 2v2k_A 4 IAEPCVDVKDKACIEECPVDCIY-----------------EGARM---------L--YIHPDECVDCGACEPVCPVEA 53 (105)
T ss_dssp ECGGGTTTCCCHHHHHCTTCCEE-----------------ECSSC---------E--EECTTTCCCCCCSGGGCTTCC
T ss_pred ecccCCCCCcChhhhhcCccccC-----------------cCCCc---------E--EEeCCcCcchhhHHHhCCccC
Confidence 45789988 9999999964211 00000 0 113467999999999999985
No 60
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=96.78 E-value=0.00011 Score=50.44 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=15.6
Q ss_pred cccccCcccCcccCCCCC
Q 023670 187 DGMYECILCACCSTSCPS 204 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~ 204 (279)
.+..+|+.||.|+.+||.
T Consensus 6 id~~~C~~C~~C~~~Cp~ 23 (66)
T 1sj1_A 6 VDQDTCIGDAICASLCPD 23 (66)
T ss_dssp ECTTTCCCCCHHHHHCTT
T ss_pred ECcccCcCchHHHHhCCc
Confidence 456789999999999995
No 61
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=96.76 E-value=0.00023 Score=58.19 Aligned_cols=52 Identities=25% Similarity=0.500 Sum_probs=33.8
Q ss_pred cccccCcccC-----cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670 187 DGMYECILCA-----CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 261 (279)
Q Consensus 187 ~~~~~CI~CG-----~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~ 261 (279)
.+..+|+.|| .|+.+||..... .+..... .+ ......|+.||.|+.+||.
T Consensus 5 vd~~~C~~C~~~~~~~C~~~CP~~ai~-----------------~~~~~~~------~~--~id~~~C~~Cg~Cv~~CP~ 59 (150)
T 1jnr_B 5 VNPEKCDGCKALERTACEYICPNDLMT-----------------LDKEKMK------AY--NREPDMCWECYSCVKMCPQ 59 (150)
T ss_dssp ECTTTCCSCCSSSSCHHHHHCTTSCEE-----------------EETTTTE------EE--ESCGGGCCCCCHHHHHCTT
T ss_pred ECcccCCCCCCcccccchhhcCccCeE-----------------EecCCce------ee--eeCcccCcCHhHHHHhCCc
Confidence 3457899999 999999964211 0000000 00 1134679999999999999
Q ss_pred CC
Q 023670 262 GL 263 (279)
Q Consensus 262 gi 263 (279)
++
T Consensus 60 ~A 61 (150)
T 1jnr_B 60 GA 61 (150)
T ss_dssp CC
T ss_pred cc
Confidence 85
No 62
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=96.74 E-value=0.00025 Score=58.99 Aligned_cols=51 Identities=24% Similarity=0.564 Sum_probs=33.6
Q ss_pred ccccCcccC-----cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCC
Q 023670 188 GMYECILCA-----CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKG 262 (279)
Q Consensus 188 ~~~~CI~CG-----~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~g 262 (279)
+..+|+.|| .|+.+||..... + +.... ..+ ......|+.||.|+.+||.+
T Consensus 5 d~~~C~gC~~c~~~~C~~~CP~~ai~---------------~--~~~~~------~~~--~~d~~~C~~Cg~Cv~~CP~~ 59 (166)
T 3gyx_B 5 DPSKCDGCKGGEKTACMYICPNDLMI---------------L--DPEEM------KAF--NQEPEACWECYSCIKICPQG 59 (166)
T ss_dssp CTTTCCCCCSSSCCHHHHHCTTSCEE---------------E--ETTTT------EEE--ESCGGGCCCCCHHHHHCSSC
T ss_pred cchhcCCCCCCCcchhHHhCCccccE---------------E--ecCCc------eeE--ecCcccCcccChHhHhCCcc
Confidence 457899999 999999964210 0 00000 000 11346799999999999998
Q ss_pred C
Q 023670 263 L 263 (279)
Q Consensus 263 i 263 (279)
+
T Consensus 60 A 60 (166)
T 3gyx_B 60 A 60 (166)
T ss_dssp C
T ss_pred c
Confidence 5
No 63
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=96.71 E-value=0.0011 Score=71.47 Aligned_cols=83 Identities=18% Similarity=0.307 Sum_probs=59.8
Q ss_pred EEEEEe-ccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE------CCe----eecccccccc--CCCCceE
Q 023670 66 KEFEIN-LKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI------DGC----NGLACLTKIS--PSGSAST 132 (279)
Q Consensus 66 ~~~~v~-~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i------nG~----~~lAC~t~v~--~g~~~~~ 132 (279)
+.++++ +++ .+|||+-||... .. -....+|.+|-||+|+|.| +|+ .+=||.+++- +|...+|
T Consensus 17 ~~v~~~~~~p-~~tLl~~LR~~~-~l---tGTK~gC~EG~CGACtV~v~~~~~~~~~~~~~avNsCl~~l~~~~g~~v~T 91 (1335)
T 3zyv_A 17 KKVTERNADP-EVNLLFYLRKVI-RL---TGTKYGCGGGDCGACTVMISRYDPISKRISHFSATACLVPICSLHGAAVTT 91 (1335)
T ss_dssp EEEEESSCCT-TCBHHHHHHHTT-CC---TTSCCSCSSSSSCTTEEEEEEEETTTTEEEEEEEETTTCBGGGCTTCEEEC
T ss_pred EEEEeCCCCc-CccHHHHHhccC-CC---cccccccCCCCCcceEEEEeeEeCCCCeEEEEEhhHHHHHHHHhcCCEEEe
Confidence 456664 445 799999999843 12 3356789999999999998 343 3559999998 7888899
Q ss_pred EeeCCC----Ccchhhhhhccchhh
Q 023670 133 ITPLPH----MFVIKDLVVDMTNFY 153 (279)
Q Consensus 133 iepl~~----~~vikDLvvD~~~~~ 153 (279)
||.|.+ +--|+.-+++.+.-.
T Consensus 92 vEglg~~~~~lHpvQ~~~a~~hgsQ 116 (1335)
T 3zyv_A 92 VEGIGSTKTRIHPVQERIAKGHGTQ 116 (1335)
T ss_dssp HHHHCCTTSCCCHHHHHHHHTTCCS
T ss_pred eCCCCCCCCCCCHHHHHHHhcCCCc
Confidence 999864 223555666665533
No 64
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=96.66 E-value=0.00027 Score=75.39 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=17.0
Q ss_pred cccccCcccCcccCCCCCcc
Q 023670 187 DGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~ 206 (279)
.+.++||.||.|+.+||...
T Consensus 683 ~d~~kCi~Cg~Cv~vCP~~A 702 (1231)
T 2c42_A 683 WVPENCIQCNQCAFVCPHSA 702 (1231)
T ss_dssp ECTTTCCCCCHHHHHCSSCC
T ss_pred EeCccCCchhhHHHhCCccc
Confidence 35689999999999999753
No 65
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=96.49 E-value=0.0019 Score=64.18 Aligned_cols=50 Identities=28% Similarity=0.565 Sum_probs=39.1
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEE-CCe-----------------eeccccccccC
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNI-DGC-----------------NGLACLTKISP 126 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~i-nG~-----------------~~lAC~t~v~~ 126 (279)
+++++ |.|||||+++.|. ....+|+ .|.||+|.|.| .|. .+|+|.+.+..
T Consensus 15 v~v~~-G~tLLeAa~~aGi------~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~s 83 (631)
T 3zyy_X 15 VAISE-NTNLMEALNLAGI------NIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQTYPES 83 (631)
T ss_dssp EEECT-TSCHHHHHHHHTC------CCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETTTEEECS
T ss_pred EEECC-CCcHHHHHHHcCC------CCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEeeeCEECC
Confidence 44556 8999999999983 2457899 89999999986 342 37899998873
No 66
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=96.44 E-value=0.0018 Score=62.09 Aligned_cols=56 Identities=27% Similarity=0.271 Sum_probs=41.9
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCC-CCCc--cCeeEEEECCee-eccccccccCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSC-REGI--CGSCAMNIDGCN-GLACLTKISPS 127 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c-~~g~--CG~C~v~inG~~-~lAC~t~v~~g 127 (279)
+.|++ .+ |.||++||..+|. |.|++...- +.|. ||.|.|+|||.+ +.||.|.+.+|
T Consensus 23 ~~~~~--~~-g~ti~~a~~~~g~---~~~~~~~~~~p~g~~~~~~c~v~v~g~~~~~ac~~~v~~G 82 (493)
T 1y56_A 23 KELEA--YE-GEKLPVALLANEI---YWLTTSNEGRKRGAFTFGPVPMTVNGVKGLEARRIKVKDG 82 (493)
T ss_dssp EEEEE--ET-TCBHHHHHHHTTC---CCCEECTTSCEECSSSSSCCEEBSSSCTTEEGGGCBCCTT
T ss_pred EEEEe--cC-CCHHHHHHHHCCC---ceecCCCCCCCCccccceEEEEEECCEecccceeEEcccC
Confidence 44555 56 8999999999884 556643322 2355 789999999975 78999999987
No 67
>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A
Probab=96.37 E-value=0.00062 Score=53.92 Aligned_cols=43 Identities=16% Similarity=0.366 Sum_probs=11.5
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEEC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNID 113 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~in 113 (279)
+.++|++.+ |.|||+|+++++.. +|. ...|+ .|.||+|.|.|.
T Consensus 16 ~~~~v~~~~-G~tLl~aa~~~gi~-i~g---~~~CgG~g~CgtC~v~v~ 59 (123)
T 3n9z_C 16 ETLTTKGKV-GDSLLDVVVENNLD-IDG---FGACEGTLACSTCHLIFE 59 (123)
T ss_dssp --------------------------------CTTCSSSSCSTTBC---
T ss_pred CEEEEEECC-CCcHHHHHHHcCCC-CCc---CCCCCCCCEeCCCeeEEe
Confidence 346677777 99999999998842 211 26797 699999999885
No 68
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=95.86 E-value=0.0022 Score=57.44 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=34.1
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhh----------h--
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTI----------L-- 253 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~C----------g-- 253 (279)
..+.++||.||.|+.+||..... + +.. ......|+.| |
T Consensus 93 ~id~~~CigC~~C~~~CP~~Ai~---------------~--~~~-------------~~~~~kC~~C~~r~~~~~~~G~~ 142 (274)
T 1ti6_B 93 LIDPEKAKGKKELLDTCPYGVMY---------------W--NEE-------------ENVAQKCTMCAHLLDDESWAPKM 142 (274)
T ss_dssp EECTTTTTTCGGGGGGCSSCCCE---------------E--ETT-------------TTEEECCCTTHHHHTCTTCTTCS
T ss_pred EechhhccchHHHHhhCccCCeE---------------E--Ecc-------------cCccccCCCchhhhhhhccCCCC
Confidence 34567899999999999964211 0 000 0124679999 9
Q ss_pred -hhhhhCCCCC
Q 023670 254 -NCARACPKGL 263 (279)
Q Consensus 254 -~C~~vCP~gi 263 (279)
.|+.+||+++
T Consensus 143 P~Cv~~CP~~A 153 (274)
T 1ti6_B 143 PRCAHNCGSFV 153 (274)
T ss_dssp CHHHHHCSSCC
T ss_pred cchhhhCCcCc
Confidence 9999999986
No 69
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=95.74 E-value=0.0017 Score=60.31 Aligned_cols=18 Identities=28% Similarity=0.722 Sum_probs=15.0
Q ss_pred ccCchhhh---------hhhhhCCCCC
Q 023670 246 LYRCHTIL---------NCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg---------~C~~vCP~gi 263 (279)
...|+.|+ .|+.+||+++
T Consensus 208 ~~kC~~C~~r~~~g~~paCv~~CP~~A 234 (352)
T 2ivf_B 208 SEKCILCYPRIEKGIANACNRQCPGRV 234 (352)
T ss_dssp EEECCTTHHHHTTTBCCHHHHTCTTCC
T ss_pred ccccCCCcchhhcCCCChHHHhcCccc
Confidence 46799996 8999999887
No 70
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=95.62 E-value=0.0023 Score=54.37 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=15.2
Q ss_pred hcccccCcccC--cccCCCCCc
Q 023670 186 LDGMYECILCA--CCSTSCPSY 205 (279)
Q Consensus 186 ~~~~~~CI~CG--~C~~~CP~~ 205 (279)
......|+.|+ .|+.+||..
T Consensus 52 ~~~~~~C~~C~~p~C~~~CP~g 73 (195)
T 2vpz_B 52 EFRPEQCLHCENPPCVPVCPTG 73 (195)
T ss_dssp EEEEEECCCCSSCTTTTTCSSS
T ss_pred EECcccCcCccCcHHHHhcCCC
Confidence 34567899998 799999864
No 71
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=95.60 E-value=0.00081 Score=70.51 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=31.8
Q ss_pred cccccCcccCcccCCCCC--cccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCC
Q 023670 187 DGMYECILCACCSTSCPS--YWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPK 261 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~--~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~ 261 (279)
.+..+|+.||.|+.+||. +... .+ +.... .. ... ..|+.||.|+.+||.
T Consensus 948 id~~~C~~Cg~C~~~CP~~~~~ai--------------~~--~~~~~-------~~--~~~-~~C~~Cg~C~~~CP~ 998 (1025)
T 1gte_A 948 IDEEMCINCGKCYMTCNDSGYQAI--------------QF--DPETH-------LP--TVT-DTCTGCTLCLSVCPI 998 (1025)
T ss_dssp ECTTTCCCCCHHHHHHHHHSCSCE--------------EE--CTTTC-------CE--EEC-TTCCCCCHHHHHCSS
T ss_pred EEcccCcccCHHHHhcCccccCCE--------------EE--eCCCc-------eE--EeC-ccCCChhHHHhhCCC
Confidence 455789999999999996 2111 00 00000 00 112 679999999999998
No 72
>2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum}
Probab=95.58 E-value=0.0023 Score=59.36 Aligned_cols=52 Identities=21% Similarity=0.441 Sum_probs=35.1
Q ss_pred hcccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
+.+...|+.|+ .|+.+||..... .+..+. .+ ......|+.||.|+.+||.++
T Consensus 145 ~~~~~~C~~C~~~~Cv~~CP~gAi~-----------------~~~~~g-------~v--~id~~kCigCg~Cv~aCP~~A 198 (352)
T 2ivf_B 145 FYLARMCNHCTNPACLAACPTGAIY-----------------KREDNG-------IV--LVDQERCKGHRHCVEACPYKA 198 (352)
T ss_dssp EEEEECCCCCSSCHHHHHCTTCCEE-----------------ECTTTC-------CE--EECTTTCCCCCHHHHHCTTCC
T ss_pred EECCCCCcCcCCccccccCCCCcee-----------------ecCCCC-------eE--EechhhcCCchHHHhhcCccc
Confidence 45568999999 999999964321 000000 01 113467999999999999986
No 73
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=95.53 E-value=0.0028 Score=57.28 Aligned_cols=47 Identities=26% Similarity=0.702 Sum_probs=32.9
Q ss_pred cccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhhh
Q 023670 187 DGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCAR 257 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~~ 257 (279)
.+..+|+.||.|+.+||..... + +.. ......|+.|+ .|+.
T Consensus 128 id~~~CigCg~C~~~CP~~ai~---------------~--~~~-------------~~~~~kC~~C~~r~~~g~~p~Cv~ 177 (294)
T 1kqf_B 128 FQSENCIGCGYCIAGCPFNIPR---------------L--NKE-------------DNRVYKCTLCVDRVSVGQEPACVK 177 (294)
T ss_dssp ECGGGCCCCCHHHHHCTTCCCE---------------E--ETT-------------TTEEECCCTTHHHHTTTCCCHHHH
T ss_pred eCcccCCCcchhhhcCCCCCcE---------------e--cCC-------------CCCeeeCCCccchhhcCccHHHHH
Confidence 4567899999999999954210 0 000 01235799998 9999
Q ss_pred hCCCCC
Q 023670 258 ACPKGL 263 (279)
Q Consensus 258 vCP~gi 263 (279)
+||+++
T Consensus 178 ~CP~~A 183 (294)
T 1kqf_B 178 TCPTGA 183 (294)
T ss_dssp HCTTSC
T ss_pred hCCcCc
Confidence 999986
No 74
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=95.46 E-value=0.0024 Score=62.02 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=33.8
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhh
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCA 256 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~ 256 (279)
..+..+|+.||.|+.+||..... + +.. ......|+.|| .|+
T Consensus 211 ~id~~kCigCg~Cv~~CP~~AI~---------------~--~~~-------------~~~~~kC~~Cg~ri~~G~~P~Cv 260 (512)
T 1q16_B 211 LIDQDKCRGWRMCITGCPYKKIY---------------F--NWK-------------SGKSEKCIFCYPRIEAGQPTVCS 260 (512)
T ss_dssp EECTTTCCCCCCHHHHCTTCCEE---------------E--ETT-------------TTEEEECCTTHHHHTTTCCCHHH
T ss_pred EECHHHCCCchHHHhhCCcccee---------------c--ccC-------------CCCcccCcCCCchhhcCCCCceE
Confidence 34567899999999999964210 0 000 01246799999 999
Q ss_pred hhCCCCC
Q 023670 257 RACPKGL 263 (279)
Q Consensus 257 ~vCP~gi 263 (279)
.+||.++
T Consensus 261 ~~CP~~A 267 (512)
T 1q16_B 261 ETCVGRI 267 (512)
T ss_dssp HTCTTCC
T ss_pred eeCchhh
Confidence 9999987
No 75
>2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B*
Probab=95.42 E-value=0.003 Score=53.61 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=33.3
Q ss_pred hcccccCcccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhh---------hhh
Q 023670 186 LDGMYECILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTIL---------NCA 256 (279)
Q Consensus 186 ~~~~~~CI~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg---------~C~ 256 (279)
..+..+||.||.|+.+||..... + +.. . +...|+.|+ .|+
T Consensus 84 ~id~~~CigC~~C~~~CP~~Ai~---------------~--~~~-------------~-~~~kC~~C~~~~~~g~~p~Cv 132 (195)
T 2vpz_B 84 LVDPKKCIACGACIAACPYDARY---------------L--HPA-------------G-YVSKCTFCAHRLEKGKVPACV 132 (195)
T ss_dssp EECTTTCCCCCHHHHHCTTCCCE---------------E--CTT-------------S-SEECCCTTHHHHHTTCCCHHH
T ss_pred eecCCCCCCcChhHhhCCCCCeE---------------E--CCC-------------C-CCccCcCcchHHhCCCCchhH
Confidence 34567899999999999954210 0 000 0 146799999 799
Q ss_pred hhCCCCC
Q 023670 257 RACPKGL 263 (279)
Q Consensus 257 ~vCP~gi 263 (279)
.+||+++
T Consensus 133 ~~CP~~A 139 (195)
T 2vpz_B 133 ETCPTYC 139 (195)
T ss_dssp HSCTTCC
T ss_pred hhCCccc
Confidence 9999886
No 76
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=94.90 E-value=0.0068 Score=52.15 Aligned_cols=60 Identities=12% Similarity=0.091 Sum_probs=38.5
Q ss_pred cccccCc--ccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhh------h---hh
Q 023670 187 DGMYECI--LCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTI------L---NC 255 (279)
Q Consensus 187 ~~~~~CI--~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~C------g---~C 255 (279)
.+..+|+ .||.|+.+||..... + +.. ......|+.| | .|
T Consensus 103 id~~~C~~~~C~~C~~~CP~~Ai~---------------~--~~~-------------~~~~~kC~~C~~~~~~G~~p~C 152 (214)
T 1h0h_B 103 FTPKTKDLEDYESVISACPYDVPR---------------K--VAE-------------SNQMAKCDMCIDRITNGLRPAC 152 (214)
T ss_dssp ECGGGGGCSCHHHHHHHCTTCCCE---------------E--CTT-------------SSCEECCCTTHHHHTTTCCCHH
T ss_pred EeHHHCccccccHHHHhcCCCCeE---------------e--cCC-------------CcccCcCCCCcchhhcCCChhH
Confidence 4557899 999999999954211 0 000 0124679999 5 99
Q ss_pred hhhCCCCC----ChHHHHHHHHHHH
Q 023670 256 ARACPKGL----NPGKQIINIKQLQ 276 (279)
Q Consensus 256 ~~vCP~gi----~~~~~I~~lR~~~ 276 (279)
+.+||+++ +..++....++.+
T Consensus 153 v~~CP~~Ai~~~~~~~~~~~~~~~~ 177 (214)
T 1h0h_B 153 VTSCPTGAMNFGDLSEMEAMASARL 177 (214)
T ss_dssp HHHCSSSCEEEEEHHHHHHHHHHHH
T ss_pred HHhcCcccEEEccHHHHHHHHHHHH
Confidence 99999886 3445555555443
No 77
>1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B*
Probab=94.39 E-value=0.0073 Score=58.63 Aligned_cols=52 Identities=21% Similarity=0.389 Sum_probs=34.6
Q ss_pred hcccccCcccC--cccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCA--CCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG--~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
......|+.|+ .|+.+||..... .+..+. . + ......|+.||.|+.+||.++
T Consensus 178 ~~~~~~C~~C~~~~Cv~aCP~gAI~-----------------~~~~~g----~---v--~id~~kCigCg~Cv~~CP~~A 231 (512)
T 1q16_B 178 MYLPRLCEHCLNPACVATCPSGAIY-----------------KREEDG----I---V--LIDQDKCRGWRMCITGCPYKK 231 (512)
T ss_dssp EEEEECCCCCSSCHHHHTCTTCCEE-----------------EETTTC----C---E--EECTTTCCCCCCHHHHCTTCC
T ss_pred EecCccCcCCCCchhhhhCCcCcEE-----------------eecCCC----e---E--EECHHHCCCchHHHhhCCccc
Confidence 44678999999 699999964211 000000 0 0 113467999999999999986
No 78
>1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B*
Probab=94.27 E-value=0.0048 Score=55.70 Aligned_cols=51 Identities=22% Similarity=0.486 Sum_probs=34.1
Q ss_pred cccccCcccC--cccCCCCC-cccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 187 DGMYECILCA--CCSTSCPS-YWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 187 ~~~~~CI~CG--~C~~~CP~-~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.....|+.|+ .|+.+||. ..... ..++. + ......|+.||.|..+||.++
T Consensus 95 ~~~~~C~~C~~~~C~~~CP~~gAi~~---------------~~~g~----------v--~id~~~CigCg~C~~~CP~~a 147 (294)
T 1kqf_B 95 IRKDGCMHCEDPGCLKACPSAGAIIQ---------------YANGI----------V--DFQSENCIGCGYCIAGCPFNI 147 (294)
T ss_dssp EEEESCCCBSSCHHHHHCCSTTSEEE---------------ETTSC----------E--EECGGGCCCCCHHHHHCTTCC
T ss_pred ECcccCCCcCChhhhhhCCccCcccc---------------ccccc----------e--EeCcccCCCcchhhhcCCCCC
Confidence 3457899999 89999996 32110 00000 1 113467999999999999986
Q ss_pred C
Q 023670 264 N 264 (279)
Q Consensus 264 ~ 264 (279)
-
T Consensus 148 i 148 (294)
T 1kqf_B 148 P 148 (294)
T ss_dssp C
T ss_pred c
Confidence 4
No 79
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N*
Probab=93.89 E-value=0.017 Score=51.66 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=35.0
Q ss_pred hcccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCCCCC
Q 023670 186 LDGMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGL 263 (279)
Q Consensus 186 ~~~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP~gi 263 (279)
.+....|++|+. |+.+||. ..... .++. + ......|+.||.|..+||.++
T Consensus 62 ~~~~~~C~~C~~p~C~~~CP~-Ai~~~---------------~~g~----------v--~id~~~CigC~~C~~~CP~~A 113 (274)
T 1ti6_B 62 NYRPTPCMHCENAPCVAKGNG-AVYQR---------------EDGI----------V--LIDPEKAKGKKELLDTCPYGV 113 (274)
T ss_dssp EEEEECCCCCTTCHHHHHTTT-SEEEC---------------TTSC----------E--EECTTTTTTCGGGGGGCSSCC
T ss_pred eEcCCcCCCCCChHHHhhChH-Hhhhc---------------cCCc----------E--EechhhccchHHHHhhCccCC
Confidence 345678999999 9999997 42100 0000 0 113467999999999999986
Q ss_pred C
Q 023670 264 N 264 (279)
Q Consensus 264 ~ 264 (279)
-
T Consensus 114 i 114 (274)
T 1ti6_B 114 M 114 (274)
T ss_dssp C
T ss_pred e
Confidence 3
No 80
>1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5
Probab=92.38 E-value=0.026 Score=48.42 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=34.3
Q ss_pred hcccccCcccCc--ccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCch--hhhhhhhhCCC
Q 023670 186 LDGMYECILCAC--CSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCH--TILNCARACPK 261 (279)
Q Consensus 186 ~~~~~~CI~CG~--C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~--~Cg~C~~vCP~ 261 (279)
.+....|+.|+. |+.+||+.... ++. .+..+. .+ ......|+ .||.|..+||.
T Consensus 66 ~~~~~~C~~C~~p~C~~~CP~~~~g------------Ai~--~~~~~g-------~v--~id~~~C~~~~C~~C~~~CP~ 122 (214)
T 1h0h_B 66 LFFPDQCRHCIAPPCKATADMEDES------------AII--HDDATG-------CV--LFTPKTKDLEDYESVISACPY 122 (214)
T ss_dssp EEEEECCCCCSSCHHHHHHTTTCTT------------SEE--ECTTTC-------CE--EECGGGGGCSCHHHHHHHCTT
T ss_pred eecCCcCcCcCCchhhccCCccccc------------cEE--ecCCCC-------eE--EEeHHHCccccccHHHHhcCC
Confidence 345678999997 99999932100 000 000000 01 11346799 99999999999
Q ss_pred CCC
Q 023670 262 GLN 264 (279)
Q Consensus 262 gi~ 264 (279)
++-
T Consensus 123 ~Ai 125 (214)
T 1h0h_B 123 DVP 125 (214)
T ss_dssp CCC
T ss_pred CCe
Confidence 863
No 81
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=90.87 E-value=0.25 Score=51.40 Aligned_cols=58 Identities=9% Similarity=-0.040 Sum_probs=44.6
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCCCCccccCC------CCCCccCeeEEEEC---C----e-eeccccccccCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEIDPSLTFRRS------CREGICGSCAMNID---G----C-NGLACLTKISPS 127 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~------c~~g~CG~C~v~in---G----~-~~lAC~t~v~~g 127 (279)
+.|+. .+ |.||+.||..+|. .....+|+++ |..|.|..|.|+|+ | . ++.||.+.+.+|
T Consensus 30 ~~~~~--~~-g~tv~~aL~~~Gv-~~~~~s~~~~~prg~~~~~~~c~~~~v~v~~~~~g~~~~~~~~ac~~~~~~g 101 (965)
T 2gag_A 30 AKLSA--FR-GDTVASALLANGV-RRAGNSLYLDRPRGIFAAGVEEPNALVTVSARHEQDIDESMLPATTVPVTED 101 (965)
T ss_dssp EEEEE--EE-TCBHHHHHHHTTC-CBCSCCTTTCCCCBCCCSSTTCCSCEEEECCCSTTCCCEEEEEGGGCBCCTT
T ss_pred EEEEe--cC-CCHHHHHHHHcCC-eEeecCCCCCCCcccccCCccCCceEEEEccCCCCCcCCccccceeeecccc
Confidence 55554 35 7899999999984 4456665322 78899999999999 6 3 567999999986
No 82
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=89.74 E-value=0.024 Score=52.66 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=16.2
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|..+||.++
T Consensus 237 d~~~C~~Cg~C~~~CP~~A 255 (366)
T 3mm5_B 237 DVEKCMYCGNCYTMCPGMP 255 (366)
T ss_dssp CGGGCCCCCHHHHHCTTCC
T ss_pred ehhhCCCcchHHHhCCHhh
Confidence 3467999999999999973
No 83
>2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa}
Probab=89.33 E-value=0.1 Score=37.05 Aligned_cols=18 Identities=28% Similarity=0.630 Sum_probs=15.8
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||.++
T Consensus 5 ~~~C~~C~~C~~~CP~~a 22 (82)
T 2fgo_A 5 TDDCINCDVCEPECPNGA 22 (82)
T ss_dssp CTTCCCCCTTGGGCTTCC
T ss_pred CCCCCChhhHHHHCChhc
Confidence 357999999999999875
No 84
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=89.27 E-value=0.032 Score=54.73 Aligned_cols=55 Identities=13% Similarity=0.133 Sum_probs=34.6
Q ss_pred cccccC------cccCcccCCCCCcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchhhhhhhhhCC
Q 023670 187 DGMYEC------ILCACCSTSCPSYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACP 260 (279)
Q Consensus 187 ~~~~~C------I~CG~C~~~CP~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~Cg~C~~vCP 260 (279)
.+...| ..||.|+.+||.... .++ +..+... .+ + ......|+.||.|..+||
T Consensus 507 ~d~~~~~~~~~~~~~~~c~~~CPa~~~---------------~~~-~~~~~~~-~~---~--~i~~~~Ci~C~~C~~~cp 564 (584)
T 2gmh_A 507 KDDSVPVNRNLSIYDGPEQRFCPAGVY---------------EFV-PLEQGDG-FR---L--QINAQNCVHCKTCDIKDP 564 (584)
T ss_dssp SSTTHHHHTHHHHHCCTHHHHCTTCCE---------------EEE-ECSSTTC-EE---E--EECGGGCCCCCHHHHHCT
T ss_pred cCcccchhhchhhhcchhhhcCChhhE---------------EEe-ecCCCCc-eE---E--EEeCCCCcCCCCchhhCC
Confidence 345678 889999999997532 111 1000000 00 1 124678999999999999
Q ss_pred CCC
Q 023670 261 KGL 263 (279)
Q Consensus 261 ~gi 263 (279)
+++
T Consensus 565 ~~~ 567 (584)
T 2gmh_A 565 SQN 567 (584)
T ss_dssp TCC
T ss_pred CCC
Confidence 876
No 85
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=89.19 E-value=0.11 Score=33.82 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=15.7
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|..+||.++
T Consensus 5 ~~~C~~C~~C~~~CP~~a 22 (55)
T 2fdn_A 5 NEACISCGACEPECPVNA 22 (55)
T ss_dssp CTTCCCCCTTGGGCTTCC
T ss_pred cccCcChhhHHHHCCccc
Confidence 357999999999999875
No 86
>1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C*
Probab=88.89 E-value=0.11 Score=36.42 Aligned_cols=18 Identities=33% Similarity=0.802 Sum_probs=15.8
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||.++
T Consensus 7 ~~~C~~Cg~C~~~CP~~a 24 (80)
T 1jb0_C 7 YDTCIGCTQCVRACPTDV 24 (80)
T ss_dssp ETTCCCCCHHHHHCTTCC
T ss_pred CCcCcChhHHHHHCCccc
Confidence 357999999999999875
No 87
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=88.76 E-value=0.11 Score=36.80 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=15.9
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||.++
T Consensus 5 ~~~C~~C~~C~~~CP~~a 22 (80)
T 1rgv_A 5 NDDCTACDACVEECPNEA 22 (80)
T ss_dssp CSCCCCCCTTTTTCTTCC
T ss_pred CCCCcChhhHHHHcChhc
Confidence 367999999999999875
No 88
>3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A
Probab=88.70 E-value=0.12 Score=36.78 Aligned_cols=18 Identities=28% Similarity=0.643 Sum_probs=15.9
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||.++
T Consensus 5 ~~~C~~C~~C~~~CP~~a 22 (82)
T 3eun_A 5 TDECINCDVCEPECPNGA 22 (82)
T ss_dssp CTTCCCCCTTGGGCTTCC
T ss_pred CCCCcCccchHHHCChhh
Confidence 367999999999999875
No 89
>2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli}
Probab=88.42 E-value=0.12 Score=37.18 Aligned_cols=17 Identities=24% Similarity=0.620 Sum_probs=15.4
Q ss_pred cCchhhhhhhhhCCCCC
Q 023670 247 YRCHTILNCARACPKGL 263 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~gi 263 (279)
..|+.||.|+.+||.++
T Consensus 6 ~~C~~C~~C~~~CP~~a 22 (85)
T 2zvs_A 6 KKCINCDMCEPECPNEA 22 (85)
T ss_dssp TTCCCCCTTTTTCTTCC
T ss_pred CcCcChhHHHHHCchhc
Confidence 57999999999999875
No 90
>1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A
Probab=87.73 E-value=0.13 Score=33.62 Aligned_cols=18 Identities=22% Similarity=0.628 Sum_probs=15.8
Q ss_pred cCchhhhhhhhhCCCCCC
Q 023670 247 YRCHTILNCARACPKGLN 264 (279)
Q Consensus 247 ~~C~~Cg~C~~vCP~gi~ 264 (279)
..|+.||.|+.+||.++.
T Consensus 6 ~~C~~C~~C~~~CP~~~~ 23 (58)
T 1f2g_A 6 DDCMACEACVEICPDVFE 23 (58)
T ss_dssp TTCCCCCHHHHHCTTTEE
T ss_pred CcCccchHHHHhCCccEE
Confidence 679999999999998653
No 91
>1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A
Probab=87.52 E-value=0.15 Score=37.75 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=15.8
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||.++
T Consensus 42 ~~~C~~Cg~C~~~CP~~a 59 (103)
T 1xer_A 42 FDLCIADGSCINACPVNV 59 (103)
T ss_dssp TTTCCCCCHHHHHCTTCC
T ss_pred hhhCCChhhHHHHcCccC
Confidence 467999999999999775
No 92
>1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A
Probab=87.16 E-value=0.16 Score=34.05 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=14.7
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+|| ++
T Consensus 8 ~~~C~~Cg~C~~~CP-~~ 24 (64)
T 1dax_A 8 QDECIACESCVEIAP-GA 24 (64)
T ss_dssp STTCCSCCHHHHHCT-TT
T ss_pred cccCCCchHHHHhCC-cc
Confidence 467999999999999 54
No 93
>3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9*
Probab=86.62 E-value=0.21 Score=40.69 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.6
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||.++
T Consensus 49 d~~~Ci~C~~C~~~CP~~a 67 (182)
T 3i9v_9 49 GLEKCIGCSLCAAACPAYA 67 (182)
T ss_dssp SCBSCCCCCHHHHHCTTCC
T ss_pred CCccCcccccchhhCCccc
Confidence 3568999999999999875
No 94
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=85.82 E-value=0.19 Score=32.83 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=16.1
Q ss_pred ccCchhhhhhhhhCCCCCC
Q 023670 246 LYRCHTILNCARACPKGLN 264 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi~ 264 (279)
...|+.||.|+.+||..+.
T Consensus 7 ~~~C~~C~~C~~~Cp~~~~ 25 (60)
T 1rof_A 7 ADACIGCGVCENLCPDVFQ 25 (60)
T ss_dssp TTTCCSCCSSTTTCTTTBC
T ss_pred hhhCCCChHHHHhCcHHHe
Confidence 4679999999999997654
No 95
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=85.58 E-value=0.15 Score=48.18 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=17.1
Q ss_pred CccCchhhhhhhhhCCCCCC
Q 023670 245 KLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~ 264 (279)
....|+.||.|..+||+++.
T Consensus 282 d~~~Ci~Cg~Ci~~CP~~~~ 301 (418)
T 3mm5_A 282 DNRECVRCMHCINKMPKALK 301 (418)
T ss_dssp CTTTCCCCCHHHHHCTTTEE
T ss_pred ChhhcCccChhHHhCcHhhc
Confidence 35679999999999999763
No 96
>1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A*
Probab=85.47 E-value=0.22 Score=35.30 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=14.4
Q ss_pred ccCchhhhhhhhhCCC
Q 023670 246 LYRCHTILNCARACPK 261 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~ 261 (279)
...|+.||.|+.+||.
T Consensus 8 ~~~CigCg~C~~~CP~ 23 (81)
T 1iqz_A 8 KETCIACGACGAAAPD 23 (81)
T ss_dssp TTTCCCCSHHHHHCTT
T ss_pred cccCcccChhhHhCch
Confidence 4689999999999994
No 97
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=83.33 E-value=0.33 Score=31.53 Aligned_cols=18 Identities=22% Similarity=0.571 Sum_probs=15.1
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||..+
T Consensus 6 ~~~C~~C~~C~~~Cp~~~ 23 (59)
T 1dwl_A 6 HEECIGCESCVELCPEVF 23 (59)
T ss_dssp SCCCSSCCGGGGTSTTTE
T ss_pred hhhCcChhHHHHHCCHHh
Confidence 467999999999999643
No 98
>2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis}
Probab=82.51 E-value=0.41 Score=35.55 Aligned_cols=19 Identities=32% Similarity=0.749 Sum_probs=16.1
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+...|+.||.|+.+||...
T Consensus 35 ~~~~C~~Cg~C~~~CP~~A 53 (105)
T 2v2k_A 35 HPDECVDCGACEPVCPVEA 53 (105)
T ss_dssp CTTTCCCCCCSGGGCTTCC
T ss_pred eCCcCcchhhHHHhCCccC
Confidence 4568999999999999753
No 99
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=82.24 E-value=1.2 Score=31.51 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=25.1
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeec
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGL 118 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~l 118 (279)
++++++ |.|+.|.|++++.... ..+|.+||+.+.
T Consensus 14 ~~ev~~-g~Tv~dLL~~Lgl~~~---------------~VvV~vNG~~v~ 47 (74)
T 2l32_A 14 EVAVDD-DGTYADLVRAVDLSPH---------------EVTVLVDGRPVP 47 (74)
T ss_dssp EEECST-TCSHHHHHHTTCCCSS---------------CCCEECCCCCCC
T ss_pred eEEcCC-CCcHHHHHHHcCCCcc---------------eEEEEECCEECC
Confidence 356667 8999999999874211 258999998664
No 100
>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*
Probab=82.19 E-value=0.51 Score=40.90 Aligned_cols=26 Identities=23% Similarity=0.445 Sum_probs=20.1
Q ss_pred cCCCCCCccCeeEEEEC-C--eeeccccc
Q 023670 97 RRSCREGICGSCAMNID-G--CNGLACLT 122 (279)
Q Consensus 97 ~~~c~~g~CG~C~v~in-G--~~~lAC~t 122 (279)
+..|..|+||.|.|.+. + ...+.|+.
T Consensus 223 ~m~CG~G~C~~C~~~~~~~~~~~~~~C~d 251 (262)
T 1ep3_B 223 RMACGIGACYACVEHDKEDESHALKVCED 251 (262)
T ss_dssp CCSSSSSSSCTTEEEETTEEEEEEETTTT
T ss_pred cccCcccccccCCcccccCCCceeEEeCC
Confidence 44699999999999986 2 34578864
No 101
>7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ...
Probab=81.47 E-value=0.44 Score=35.51 Aligned_cols=18 Identities=22% Similarity=0.606 Sum_probs=15.8
Q ss_pred ccCchhhh--hhhhhCCCCC
Q 023670 246 LYRCHTIL--NCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg--~C~~vCP~gi 263 (279)
...|+.|| .|+.+||.++
T Consensus 5 ~~~C~~C~~~~C~~~CP~~a 24 (106)
T 7fd1_A 5 TDNCIKCKYTDCVEVCPVDC 24 (106)
T ss_dssp CGGGTTTCCCHHHHHCTTCC
T ss_pred ccccCCccCcHHHHHcCccc
Confidence 36799999 9999999876
No 102
>1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2
Probab=80.62 E-value=0.48 Score=33.13 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=15.4
Q ss_pred ccCchh--hhhhhhhCCCCC
Q 023670 246 LYRCHT--ILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~--Cg~C~~vCP~gi 263 (279)
...|+. ||.|+.+||.++
T Consensus 5 ~~~C~~c~C~~C~~~CP~~a 24 (78)
T 1h98_A 5 CEPCIGVKDQSCVEVCPVEC 24 (78)
T ss_dssp CGGGTTTCCCHHHHHCTTCC
T ss_pred chhCCCCCcChhhhhcCccc
Confidence 357999 999999999874
No 103
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=80.54 E-value=0.21 Score=44.20 Aligned_cols=23 Identities=4% Similarity=0.017 Sum_probs=17.0
Q ss_pred CceEEEEEeccCCCchHHHHHHHcc
Q 023670 63 PELKEFEINLKECGPMVLDALIKIK 87 (279)
Q Consensus 63 ~~~~~~~v~~~~~g~tvLdal~~~~ 87 (279)
+.+-+|.++ . .|.|+-.|||++-
T Consensus 10 ~~~~~f~l~-g-~~~t~~NalRRil 32 (265)
T 2pa8_D 10 DTRIDLVFE-G-YPLEFVNAIRRAS 32 (265)
T ss_dssp SSEEEEEEE-S-SCHHHHHHHHHHH
T ss_pred CCEEEEEEe-C-CCHHHHHHHHHHH
Confidence 456778777 2 3789999999864
No 104
>1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A
Probab=80.16 E-value=0.5 Score=32.89 Aligned_cols=18 Identities=22% Similarity=0.506 Sum_probs=15.6
Q ss_pred ccCchh--hhhhhhhCCCCC
Q 023670 246 LYRCHT--ILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~--Cg~C~~vCP~gi 263 (279)
...|+. ||.|+.+||.++
T Consensus 5 ~~~C~~c~C~~C~~~Cp~~a 24 (77)
T 1bc6_A 5 TEPCIGTKDASCVEVCPVDC 24 (77)
T ss_dssp CSTTTTCCCCSSTTTCTTCC
T ss_pred CccCCCCCcchhHHhccccc
Confidence 457999 999999999875
No 105
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=79.85 E-value=5 Score=29.26 Aligned_cols=46 Identities=9% Similarity=-0.043 Sum_probs=30.5
Q ss_pred eccCCC-chHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccc---cccccCCCCceEE
Q 023670 71 NLKECG-PMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLAC---LTKISPSGSASTI 133 (279)
Q Consensus 71 ~~~~~g-~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC---~t~v~~g~~~~~i 133 (279)
++++ + .||.|+|.+++. .+ ...+|.|||..+.-- .+.+.+| +.+.|
T Consensus 31 el~~-~~~Tv~dLL~~L~~--~~-------------~~vaVavNg~iV~~~~~~~~~L~dG-D~Vei 80 (87)
T 1tyg_B 31 KWKK-DTGTIQDLLASYQL--EN-------------KIVIVERNKEIIGKERYHEVELCDR-DVIEI 80 (87)
T ss_dssp CCSS-SCCBHHHHHHHTTC--TT-------------SCCEEEETTEEECGGGTTTSBCCSS-SEEEE
T ss_pred ECCC-CCCcHHHHHHHhCC--CC-------------CCEEEEECCEECChhhcCCcCCCCC-CEEEE
Confidence 3345 6 899999999862 21 126899999876432 4677776 34443
No 106
>1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A
Probab=78.85 E-value=0.5 Score=31.38 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=14.2
Q ss_pred ccCchhhhhhhhhCCCCC
Q 023670 246 LYRCHTILNCARACPKGL 263 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi 263 (279)
...|+.||.|+.+||..+
T Consensus 8 ~~~C~~C~~C~~~Cp~~~ 25 (66)
T 1sj1_A 8 QDTCIGDAICASLCPDVF 25 (66)
T ss_dssp TTTCCCCCHHHHHCTTTE
T ss_pred cccCcCchHHHHhCCceE
Confidence 467999999999999533
No 107
>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*
Probab=78.75 E-value=0.77 Score=41.04 Aligned_cols=29 Identities=24% Similarity=0.576 Sum_probs=21.5
Q ss_pred CccCchhhhhhhhhCCCCC-------ChHHHHHHHH
Q 023670 245 KLYRCHTILNCARACPKGL-------NPGKQIINIK 273 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi-------~~~~~I~~lR 273 (279)
+++.|+.||.|..+||+.. .|..++...|
T Consensus 178 ~~~~CI~CG~C~~aCP~~~~~~~~~lGP~~li~a~r 213 (282)
T 3vr8_B 178 GLYECILCACCSASCPSYWWNADKYLGPAVLMQAYR 213 (282)
T ss_pred hhhhCcccCcCcccCCceeccCCcCCCHHHHHHHHH
Confidence 5788999999999999653 3445555444
No 108
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=78.32 E-value=3.2 Score=31.03 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=40.1
Q ss_pred ceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccC-CCCCccccCCCCCCccCeeEEEECCeeeccccccc
Q 023670 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSE-IDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKI 124 (279)
Q Consensus 46 ~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~-~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v 124 (279)
+++++.|--=-|+ ....+.+++++ |+||.|++...|.. .-|.+... ...|.|||+.+. =.+.+
T Consensus 11 ~~~~v~v~ya~p~-----rq~~~~~~v~~-g~TV~daI~~~gi~~~~peIdl~---------~~~V~Vng~~v~-~d~~L 74 (97)
T 2hj1_A 11 NQINIEIAYAFPE-----RYYLKSFQVDE-GITVQTAITQSGILSQFPEIDLS---------TNKIGIFSRPIK-LTDVL 74 (97)
T ss_dssp CEEEEEEEEEETT-----EEEEEEEEEET-TCBHHHHHHHHTHHHHCTTCCTT---------TSEEEEEECSCC-TTCBC
T ss_pred ceEEEEEEEeCCC-----CCEEEEEEcCC-CCcHHHHHHHcCCCccCCccccc---------ccEEEEcCEECC-CCccC
Confidence 3556665332332 24555667777 99999999998841 11222211 269999999775 55566
Q ss_pred cCC
Q 023670 125 SPS 127 (279)
Q Consensus 125 ~~g 127 (279)
.+|
T Consensus 75 ~dG 77 (97)
T 2hj1_A 75 KEG 77 (97)
T ss_dssp CTT
T ss_pred CCC
Confidence 665
No 109
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=77.49 E-value=4.7 Score=28.26 Aligned_cols=37 Identities=11% Similarity=0.059 Sum_probs=27.2
Q ss_pred CchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccc---cccccCC
Q 023670 76 GPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLAC---LTKISPS 127 (279)
Q Consensus 76 g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC---~t~v~~g 127 (279)
+.||.+.|.+.+. +| ..++|.+||..+..- .+.+.+|
T Consensus 14 ~~Tl~~LL~~l~~--~~-------------~~vAV~vNg~iVpr~~~~~~~L~dG 53 (73)
T 2kl0_A 14 SASVAALMTELDC--TG-------------GHFAVALNYDVVPRGKWDETPVTAG 53 (73)
T ss_dssp CSBHHHHHHHTTC--CS-------------SSCEEEESSSEECHHHHTTCBCCTT
T ss_pred CCcHHHHHHHcCC--CC-------------CcEEEEECCEECChHHcCcccCCCC
Confidence 6899999999873 22 127999999876533 5677776
No 110
>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...
Probab=77.44 E-value=0.37 Score=42.00 Aligned_cols=19 Identities=32% Similarity=0.754 Sum_probs=16.8
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||...
T Consensus 154 ~~~~Ci~CG~C~~~CP~~~ 172 (252)
T 2h88_B 154 GLYECILCACCSTSCPSYW 172 (252)
T ss_dssp TTTTCCCCCTTGGGCHHHH
T ss_pred hHHhchhhCcchhhCCCCc
Confidence 5789999999999999864
No 111
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=75.31 E-value=3.4 Score=29.41 Aligned_cols=46 Identities=15% Similarity=0.078 Sum_probs=30.3
Q ss_pred EEEEEeccCCCchHHHHHHHcccCCC-CCccccCCCCCCccCeeEEEECCeeeccc---cccccCC
Q 023670 66 KEFEINLKECGPMVLDALIKIKSEID-PSLTFRRSCREGICGSCAMNIDGCNGLAC---LTKISPS 127 (279)
Q Consensus 66 ~~~~v~~~~~g~tvLdal~~~~~~~d-ptl~~~~~c~~g~CG~C~v~inG~~~lAC---~t~v~~g 127 (279)
+.++++.++ +.||.++|.+.+. + + ..++|.+||..+..- .+.+.+|
T Consensus 8 e~~e~~~~~-~~Tl~~LL~~l~~--~~~-------------~~vAVavNg~iVpr~~~~~~~L~dG 57 (78)
T 2k5p_A 8 KPSTVDGAE-SLNVTELLSALKV--AQA-------------EYVTVELNGEVLEREAFDATTVKDG 57 (78)
T ss_dssp EEEECSSCS-CEEHHHHHHHHTC--SCT-------------TTCCEEETTEECCTTHHHHCEECSS
T ss_pred EEEEcCCCC-CCcHHHHHHHcCC--CCC-------------CcEEEEECCEECChHHcCcccCCCC
Confidence 344443215 7999999999873 2 1 127899999876533 4667765
No 112
>3kvp_A Uncharacterized protein YMZC; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus subtilis}
Probab=74.22 E-value=1.2 Score=31.11 Aligned_cols=12 Identities=25% Similarity=0.539 Sum_probs=10.3
Q ss_pred EEEEEeeCCCCC
Q 023670 49 KFQIYRWNPDSP 60 (279)
Q Consensus 49 ~~~i~R~~p~~~ 60 (279)
++|||||||++.
T Consensus 39 ~iKIykyde~tN 50 (72)
T 3kvp_A 39 YIKIYEYNESRN 50 (72)
T ss_dssp EEEEEEEETTTT
T ss_pred EEEEEEeCCCCC
Confidence 489999999875
No 113
>3i9v_1 NADH-quinone oxidoreductase subunit 1; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_1* 2fug_1* 3iam_1* 3ias_1* 3m9s_1*
Probab=74.07 E-value=0.45 Score=45.19 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=47.5
Q ss_pred ccccCcccCcccCCCC-CcccCCCcccCHHHHHHHHHHhhcCcchhHHHHHHHhhcccCccCchh-hhhhhhhCCCCCCh
Q 023670 188 GMYECILCACCSTSCP-SYWWTSEAYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHT-ILNCARACPKGLNP 265 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP-~~~~~~~~~~gP~~l~~a~r~~~d~r~~~~~erl~~l~~~~~~~~C~~-Cg~C~~vCP~gi~~ 265 (279)
....|++|+-|...|| ... .++..+..++.. .+.++.+. .+..|+. |+.|...|+...++
T Consensus 349 ~~ESCgqCtpCr~Gt~~~l~-------------~lL~ri~~G~g~--~~dld~L~---~l~~~i~~~s~C~lg~~A~~Pv 410 (438)
T 3i9v_1 349 AHESCGKCTPCREGVAGFMV-------------NLFAKIGTGQGE--EKDVENLE---ALLPLIEGRSFCPLADAAVWPV 410 (438)
T ss_dssp HHHCCSCCHHHHTTTTTHHH-------------HHHHHHTTTCCC--HHHHHHHH---HHHHHHTTCCSSTHHHHHHHHH
T ss_pred hhhhCCCCccchhhHHHHHH-------------HHHHHHHhCCCC--HHHHHHHH---HHHHHHccCCCCcCcHhHHHHH
Confidence 4568999999999999 432 122222333322 12222222 1334554 99999999999999
Q ss_pred HHHHHHHHHHHHh
Q 023670 266 GKQIINIKQLQLK 278 (279)
Q Consensus 266 ~~~I~~lR~~~~~ 278 (279)
...|+..|.++.+
T Consensus 411 ~s~l~~Fr~E~ea 423 (438)
T 3i9v_1 411 KGSLRHFKDQYLA 423 (438)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987653
No 114
>1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B*
Probab=74.02 E-value=0.6 Score=37.52 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.1
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+..+|+.||.|+.+||...
T Consensus 43 d~~~C~~Cg~Cv~~CP~~A 61 (150)
T 1jnr_B 43 EPDMCWECYSCVKMCPQGA 61 (150)
T ss_dssp CGGGCCCCCHHHHHCTTCC
T ss_pred CcccCcCHhHHHHhCCccc
Confidence 4567999999999999753
No 115
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=73.98 E-value=5.6 Score=26.96 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=28.7
Q ss_pred eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccc---cccccCC
Q 023670 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLAC---LTKISPS 127 (279)
Q Consensus 71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC---~t~v~~g 127 (279)
++++ +.||.+.|.+++. .+ ..++|.+||..+..- .|.+.+|
T Consensus 11 ~~~~-~~tv~~ll~~l~~--~~-------------~~v~vavN~~~v~~~~~~~~~L~~g 54 (66)
T 1f0z_A 11 QCAA-GQTVHELLEQLDQ--RQ-------------AGAALAINQQIVPREQWAQHIVQDG 54 (66)
T ss_dssp CCCT-TCCHHHHHHHHTC--CC-------------SSEEEEETTEEECHHHHTTCCCCTT
T ss_pred EcCC-CCcHHHHHHHcCC--CC-------------CCEEEEECCEECCchhcCCcCCCCC
Confidence 4456 7999999999862 11 137899999876432 5677776
No 116
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=73.28 E-value=3.6 Score=28.55 Aligned_cols=53 Identities=11% Similarity=0.072 Sum_probs=34.1
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCceEEe
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTIT 134 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~ie 134 (279)
++++++ +.||.|++..++.. .|.+. ++ .|+|.|||+.+.. .+.+.+| +++.|-
T Consensus 19 ~~~~~~-~~tv~~ll~~l~~~-~p~~~-------~v--~~~v~vNg~~v~~-~~~L~~g-D~V~i~ 71 (77)
T 2q5w_D 19 DIVLEQ-ALTVQQFEDLLFER-YPQIN-------NK--KFQVAVNEEFVQK-SDFIQPN-DTVALI 71 (77)
T ss_dssp ECCCSS-CEEHHHHHHHHHHH-CGGGT-------TC--CCEEEETTEEECT-TSEECTT-CEEEEE
T ss_pred EEECCC-CCCHHHHHHHHHHH-Ccchh-------cc--eEEEEECCEECCC-CCCcCCC-CEEEEE
Confidence 556666 89999999987632 23221 12 3799999987643 4777776 444443
No 117
>3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=73.01 E-value=1.5 Score=44.84 Aligned_cols=26 Identities=19% Similarity=0.436 Sum_probs=21.8
Q ss_pred ccCchhhhhhhhhCCCCCChHHHHHH
Q 023670 246 LYRCHTILNCARACPKGLNPGKQIIN 271 (279)
Q Consensus 246 ~~~C~~Cg~C~~vCP~gi~~~~~I~~ 271 (279)
...|+.||.|..+||.++.+.+++..
T Consensus 414 ~~~Ci~CG~C~~~CP~~~~~~~il~~ 439 (807)
T 3cf4_A 414 VAKCADCGACLLACPEEIDIPEAMGF 439 (807)
T ss_dssp HHHCCCCCHHHHHCTTCCCHHHHHHH
T ss_pred HHhCCCCCchhhhCCCCCchHHHHHH
Confidence 46799999999999999987776543
No 118
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=72.85 E-value=0.93 Score=42.21 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.2
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||+|..+||.++
T Consensus 254 d~~~Ci~Cg~C~~~CP~~A 272 (386)
T 3or1_B 254 NNDRCMYCGNCYTMCPALP 272 (386)
T ss_dssp CTTTCCCCCHHHHHCTTCC
T ss_pred CCCcCCccccHHHhCcHhh
Confidence 3568999999999999953
No 119
>3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=72.20 E-value=0.72 Score=37.73 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=16.2
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+..+|+.||.|+.+||...
T Consensus 42 d~~~C~~Cg~Cv~~CP~~A 60 (166)
T 3gyx_B 42 EPEACWECYSCIKICPQGA 60 (166)
T ss_dssp CGGGCCCCCHHHHHCSSCC
T ss_pred CcccCcccChHhHhCCccc
Confidence 4568999999999999764
No 120
>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*
Probab=70.71 E-value=0.77 Score=39.39 Aligned_cols=18 Identities=22% Similarity=0.691 Sum_probs=16.1
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
....|+.||.|+.+||+.
T Consensus 202 ~~~~C~~Cg~C~~vCP~g 219 (238)
T 2wdq_B 202 SVFRCHSIMNCVSVCPKG 219 (238)
T ss_dssp TTTTCCCCCHHHHHCTTC
T ss_pred CCCcCcccchhhhhcCCC
Confidence 567899999999999975
No 121
>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*
Probab=70.38 E-value=0.83 Score=39.32 Aligned_cols=18 Identities=33% Similarity=1.018 Sum_probs=16.1
Q ss_pred ccccCcccCcccCCCCCc
Q 023670 188 GMYECILCACCSTSCPSY 205 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~ 205 (279)
+...|+.||.|+.+||..
T Consensus 200 ~~~~C~~Cg~C~~vCP~g 217 (243)
T 1kf6_B 200 GVWSCTFVGYCSEVCPKH 217 (243)
T ss_dssp TGGGCCCCCHHHHHCTTC
T ss_pred CcccCcccCCcchhCCCC
Confidence 567899999999999975
No 122
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A*
Probab=69.67 E-value=1.4 Score=41.34 Aligned_cols=19 Identities=37% Similarity=0.815 Sum_probs=16.3
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+...|+.||.|+.+||...
T Consensus 62 ~~~~C~~Cg~C~~~CP~~A 80 (421)
T 1hfe_L 62 HIEACINCGQCLTHCPENA 80 (421)
T ss_dssp CGGGCCCCCTTGGGCTTCC
T ss_pred ChhhCCchhhHHHhhCcCC
Confidence 4568999999999999764
No 123
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=69.53 E-value=5.8 Score=29.87 Aligned_cols=37 Identities=8% Similarity=0.108 Sum_probs=25.6
Q ss_pred CCCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcc
Q 023670 43 ANTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIK 87 (279)
Q Consensus 43 ~~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~ 87 (279)
++.+.++|.|.--+.+ =..|.|+ .+ +.+|+|+|.++.
T Consensus 4 ~g~k~i~i~v~~~~~~------~~~~~v~-t~-g~tL~dvLk~~~ 40 (101)
T 3u7z_A 4 EGEKHITVTVIHGDQT------ENVFEFD-TD-AKYLGEVLESEN 40 (101)
T ss_dssp -CCEEEEEEEECTTSC------EEEEEEE-EC-CSBHHHHHHHTT
T ss_pred cceeEEEEEEEcCCCc------eeEEEEc-CC-ccHHHHHHHHcC
Confidence 3556677777542221 4778888 66 899999999876
No 124
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=66.94 E-value=7.2 Score=27.78 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=37.3
Q ss_pred EEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCc
Q 023670 51 QIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSA 130 (279)
Q Consensus 51 ~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~ 130 (279)
+||-|-|+. +.+++ +. |.|++|++..+.. .|. .. ..+.+|||+.+-- .+++.+| +.
T Consensus 7 ~i~v~tP~G------~~~~l--p~-GaT~~D~A~~Ih~----~lg--~~-------~v~AkVNG~~v~L-~~~L~~g-d~ 62 (78)
T 3hvz_A 7 EVFVFTPKG------DVISL--PI-GSTVIDFAYAIHS----AVG--NR-------MIGAKVDGRIVPI-DYKVKTG-EI 62 (78)
T ss_dssp EEEEECTTS------CEEEE--ET-TCBHHHHHHHHCH----HHH--HT-------EEEEEETTEEECT-TCBCCTT-CB
T ss_pred eEEEECCCC------CEEEe--cC-CCCHHHHHHHhhh----hhh--cc-------eEEEEECCEEcCC-CcccCCC-CE
Confidence 567778865 34444 46 8999999998853 222 11 2678999986633 3666654 34
Q ss_pred eEEe
Q 023670 131 STIT 134 (279)
Q Consensus 131 ~~ie 134 (279)
+.|-
T Consensus 63 VeIi 66 (78)
T 3hvz_A 63 IDVL 66 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 125
>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*
Probab=66.88 E-value=1.1 Score=38.56 Aligned_cols=19 Identities=32% Similarity=0.978 Sum_probs=16.6
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
.....|+.||.|..+||..
T Consensus 203 ~~~~~C~~Cg~C~~vCP~~ 221 (241)
T 2bs2_B 203 DGVFGCMTLLACHDVCPKN 221 (241)
T ss_dssp TTGGGCCCCCHHHHHCTTC
T ss_pred cCcccCcccChhhHhcCCC
Confidence 4577999999999999975
No 126
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=66.74 E-value=4.2 Score=28.60 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=28.2
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCC
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS 127 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g 127 (279)
+++++ +.||.|+|.+++. . . ..++|.|||+.+.. .+.+.+|
T Consensus 25 ~~~~~-~~Tv~dLl~~L~~--~------~-------~~v~VavNg~~v~~-~~~L~dG 65 (77)
T 1rws_A 25 IEWRE-GMKVRDILRAVGF--N------T-------ESAIAKVNGKVVLE-DDEVKDG 65 (77)
T ss_dssp CCCCS-SCCHHHHHHTTTC--S------S-------CSSCEEETTEEECS-SSCCCSS
T ss_pred EECCC-CCcHHHHHHHhCC--C------C-------cCEEEEECCEECCC-CCCcCCC
Confidence 45556 7899999998862 1 0 12689999987642 2777766
No 127
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=66.27 E-value=2.7 Score=39.63 Aligned_cols=22 Identities=23% Similarity=0.619 Sum_probs=18.0
Q ss_pred hhcccccCcccCc--ccCCCCCcc
Q 023670 185 KLDGMYECILCAC--CSTSCPSYW 206 (279)
Q Consensus 185 ~~~~~~~CI~CG~--C~~~CP~~~ 206 (279)
......+|+.||. |...||...
T Consensus 15 ~~~~a~rc~~c~~~~C~~~CP~~~ 38 (456)
T 2vdc_G 15 ANEQANRCSQCGVPFCQVHCPVSN 38 (456)
T ss_dssp HHHHHHHSCCCSSCHHHHTSTTCC
T ss_pred HHHHHHhhhcCCCchhhcCCCCCC
Confidence 3456789999986 999999864
No 128
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=65.83 E-value=26 Score=23.89 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=29.8
Q ss_pred EeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCceEEe
Q 023670 70 INLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTIT 134 (279)
Q Consensus 70 v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~ie 134 (279)
+++++ +.||.+.|.+++. .+ ...+|.+||..+..= +.+.+| +.+.|-
T Consensus 18 ~~~~~-~~tv~~Ll~~l~~--~~-------------~~v~vavN~~~v~~~-~~L~~g-D~V~ii 64 (70)
T 1ryj_A 18 LESGA-PRRIKDVLGELEI--PI-------------ETVVVKKNGQIVIDE-EEIFDG-DIIEVI 64 (70)
T ss_dssp EEESS-CCBHHHHHHHTTC--CT-------------TTEEEEETTEECCTT-SBCCTT-CEEEEE
T ss_pred EECCC-CCcHHHHHHHhCC--CC-------------CCEEEEECCEECCCc-ccCCCC-CEEEEE
Confidence 44456 7899999999862 11 126899999866422 366665 444433
No 129
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=63.33 E-value=23 Score=24.32 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=32.5
Q ss_pred CchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCceEEe
Q 023670 76 GPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTIT 134 (279)
Q Consensus 76 g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~ie 134 (279)
+.||-|++..++. .|.|.-.- ..+.|-|||+.+..=.+++.+| +++.|-
T Consensus 20 ~~tv~~ll~~L~~--~~~l~~~l-------~~~~vavN~~~v~~~~~~l~~g-DeV~i~ 68 (74)
T 3rpf_C 20 ANDLKELRAILQE--KEGLKEWL-------GVCAIALNDHLIDNLNTPLKDG-DVISLL 68 (74)
T ss_dssp CSSHHHHHHHHHT--CTTTTTTT-------TTCEEEESSSEECCTTCCCCTT-CEEEEE
T ss_pred CCcHHHHHHHHHH--CcCHHHHh-------hccEEEECCEEcCCCCcCCCCC-CEEEEE
Confidence 6899999998873 24433211 2489999999865556777765 445444
No 130
>3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B*
Probab=62.85 E-value=1.4 Score=41.06 Aligned_cols=19 Identities=32% Similarity=0.826 Sum_probs=16.4
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
.+..+|+.||.|+.+||..
T Consensus 253 id~~~Ci~Cg~C~~~CP~~ 271 (386)
T 3or1_B 253 INNDRCMYCGNCYTMCPAL 271 (386)
T ss_dssp ECTTTCCCCCHHHHHCTTC
T ss_pred cCCCcCCccccHHHhCcHh
Confidence 3567899999999999983
No 131
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=62.15 E-value=15 Score=24.51 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=30.1
Q ss_pred eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeecc---ccccccCCCCceEEe
Q 023670 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLA---CLTKISPSGSASTIT 134 (279)
Q Consensus 71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lA---C~t~v~~g~~~~~ie 134 (279)
++ + +.||.+.|.+++. .+ ...+|.+||+.+.- =.+.+.+| +.+.|-
T Consensus 10 ~~-~-~~tv~~ll~~l~~--~~-------------~~v~vavN~~~v~~~~~~~~~L~dg-D~v~i~ 58 (64)
T 2cu3_A 10 PL-E-GKTLKEVLEEMGV--EL-------------KGVAVLLNEEAFLGLEVPDRPLRDG-DVVEVV 58 (64)
T ss_dssp CC-T-TCCHHHHHHHHTB--CG-------------GGEEEEETTEEEEGGGCCCCCCCTT-CEEEEE
T ss_pred Ec-C-CCcHHHHHHHcCC--CC-------------CcEEEEECCEECCccccCCcCCCCC-CEEEEE
Confidence 44 5 6899999999862 11 13789999987642 24677766 444443
No 132
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=62.07 E-value=2.1 Score=45.74 Aligned_cols=19 Identities=26% Similarity=0.513 Sum_probs=16.6
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||.|+.+||.++
T Consensus 684 d~~kCi~Cg~Cv~vCP~~A 702 (1231)
T 2c42_A 684 VPENCIQCNQCAFVCPHSA 702 (1231)
T ss_dssp CTTTCCCCCHHHHHCSSCC
T ss_pred eCccCCchhhHHHhCCccc
Confidence 3578999999999999984
No 133
>3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B*
Probab=60.03 E-value=1.7 Score=40.03 Aligned_cols=19 Identities=32% Similarity=0.903 Sum_probs=16.6
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
.+..+|+.||.|+.+||..
T Consensus 236 id~~~C~~Cg~C~~~CP~~ 254 (366)
T 3mm5_B 236 VDVEKCMYCGNCYTMCPGM 254 (366)
T ss_dssp ECGGGCCCCCHHHHHCTTC
T ss_pred EehhhCCCcchHHHhCCHh
Confidence 4567899999999999984
No 134
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=59.21 E-value=2 Score=40.66 Aligned_cols=20 Identities=20% Similarity=0.599 Sum_probs=16.8
Q ss_pred CccCchhhhhhhhhCCCCCC
Q 023670 245 KLYRCHTILNCARACPKGLN 264 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi~ 264 (279)
....|+.||+|..+||+++.
T Consensus 299 d~~~C~~Cg~Ci~~CP~al~ 318 (437)
T 3or1_A 299 DNKNCTRCMHCINTMPRALK 318 (437)
T ss_dssp CGGGCCCCSHHHHHCTTTEE
T ss_pred ccccCCchhhhHhhCcHhhc
Confidence 34689999999999998753
No 135
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=58.49 E-value=16 Score=26.67 Aligned_cols=62 Identities=16% Similarity=0.111 Sum_probs=35.5
Q ss_pred EEeccCCCchHHHHHHHcccCCCCCccccC-CCCCCccCeeEEEECCeeeccccccccCCCCceEEe
Q 023670 69 EINLKECGPMVLDALIKIKSEIDPSLTFRR-SCREGICGSCAMNIDGCNGLACLTKISPSGSASTIT 134 (279)
Q Consensus 69 ~v~~~~~g~tvLdal~~~~~~~dptl~~~~-~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~ie 134 (279)
++++++ +.||-|++..+... .|.+.-.- ......=..+.|.|||+.+-- .+++.+| +++.|-
T Consensus 30 ~~e~~~-~~Tv~~Ll~~L~~~-~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-~~~L~dG-DeV~i~ 92 (98)
T 1vjk_A 30 EIELPE-GARVRDLIEEIKKR-HEKFKEEVFGEGYDEDADVNIAVNGRYVSW-DEELKDG-DVVGVF 92 (98)
T ss_dssp EEEECT-TCBHHHHHHHHHHH-CGGGGGSCBCSSSCTTSSBEEEETTBCCCT-TCBCCTT-CEEEEE
T ss_pred EEECCC-CCCHHHHHHHHHhH-ChhHHHHhhccccccCCcEEEEECCEECCC-CCCCCCC-CEEEEE
Confidence 455556 78999999987642 23332211 000011134799999987643 6777776 445443
No 136
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=57.26 E-value=18 Score=27.43 Aligned_cols=67 Identities=19% Similarity=0.176 Sum_probs=35.5
Q ss_pred eEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC-----Ce-eeccccccccC-CCCceEEeeCC
Q 023670 65 LKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID-----GC-NGLACLTKISP-SGSASTITPLP 137 (279)
Q Consensus 65 ~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in-----G~-~~lAC~t~v~~-g~~~~~iepl~ 137 (279)
-|.=.|++.+ |+|+-|||.++-. -|.-. +-.|+|-.- |+ ....=.|-+.. .++++.++-+.
T Consensus 28 qQrT~V~Vrp-G~tlrdaL~KaLk-------~R~L~----pe~C~Vy~~~~~~~~~~~~i~WdtDi~~L~geEL~Ve~ld 95 (107)
T 1rrb_A 28 KQRTVVNVRN-GMSLHDCLMKALK-------VRGLQ----PECCAVFRLLQEHKGKKARLDWNTDAASLIGEELQVDFLK 95 (107)
T ss_dssp TCCEEEECCT-TCBHHHHHHHHHH-------HHTCC----TTTEEEEECCCSCSSSCEECCTTCBHHHHTTSEEEEEEC-
T ss_pred CCeEEEEecC-CcCHHHHHHHHHH-------HcCCC----HHHceeEEccccCCCcccccchhhhhhhccCcEEEEEEcc
Confidence 3667788888 9999999998642 11111 124888843 32 22222222221 15788899888
Q ss_pred CCcchh
Q 023670 138 HMFVIK 143 (279)
Q Consensus 138 ~~~vik 143 (279)
+||++.
T Consensus 96 ~~p~~~ 101 (107)
T 1rrb_A 96 LAAALE 101 (107)
T ss_dssp ------
T ss_pred cCcchh
Confidence 888764
No 137
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=55.94 E-value=14 Score=26.17 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=38.1
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCC-ccCeeEEEECCeeeccccccccCCCCceEEee
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREG-ICGSCAMNIDGCNGLACLTKISPSGSASTITP 135 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g-~CG~C~v~inG~~~lAC~t~v~~g~~~~~iep 135 (279)
+.++++++ +.||-|++..+.. ..|.+.-+---..| .=..+.|.|||+.+.. .+++.+| +++.|-|
T Consensus 19 ~~~~~~~~-~~Tv~~ll~~L~~-~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~-~~~l~~g-DeV~i~P 84 (89)
T 3po0_A 19 TVRVDVDG-DATVGDALDALVG-AHPALESRVFGDDGELYDHINVLRNGEAAAL-GEATAAG-DELALFP 84 (89)
T ss_dssp EEEEECCT-TCBHHHHHHHHHH-HCGGGHHHHBCTTSCBCTTSEEEETTEECCT-TSBCCTT-CEEEEEC
T ss_pred eEEEECCC-CCcHHHHHHHHHH-HCcHHHHHHhccCCcccccEEEEECCEECCC-CcccCCC-CEEEEEC
Confidence 34567766 7899999998864 33444310000001 1113899999997754 6777776 4554443
No 138
>3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A*
Probab=55.14 E-value=2.2 Score=40.15 Aligned_cols=20 Identities=25% Similarity=0.534 Sum_probs=17.0
Q ss_pred cccccCcccCcccCCCCCcc
Q 023670 187 DGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~ 206 (279)
.+..+|+.||.|..+||...
T Consensus 281 id~~~Ci~Cg~Ci~~CP~~~ 300 (418)
T 3mm5_A 281 IDNRECVRCMHCINKMPKAL 300 (418)
T ss_dssp ECTTTCCCCCHHHHHCTTTE
T ss_pred EChhhcCccChhHHhCcHhh
Confidence 35678999999999999854
No 139
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*
Probab=54.11 E-value=2.5 Score=41.29 Aligned_cols=20 Identities=30% Similarity=0.700 Sum_probs=16.9
Q ss_pred cccccCcccCcccCCCCCcc
Q 023670 187 DGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~ 206 (279)
.+...|+.||.|+.+||...
T Consensus 185 i~~~~Ci~Cg~Cv~~CP~gA 204 (574)
T 3c8y_A 185 FDDTNCLLCGQCIIACPVAA 204 (574)
T ss_dssp GGGSSCCCCCHHHHHCSSTT
T ss_pred echhhCCcchhHHHhhccCC
Confidence 35678999999999999764
No 140
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=49.37 E-value=19 Score=24.84 Aligned_cols=59 Identities=8% Similarity=0.060 Sum_probs=35.3
Q ss_pred EEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCCCCceEEee
Q 023670 67 EFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPSGSASTITP 135 (279)
Q Consensus 67 ~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g~~~~~iep 135 (279)
+.+++ .+ +.||-+++..++. ..|.|.-.- .. +.+.|.|||+.+- =.+.+.+| +++.|-|
T Consensus 18 ~~~~~-~~-~~tv~~ll~~L~~-~~p~~~~~l--~~---~~~~v~vN~~~v~-~~~~l~~g-D~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-AD-FPTVEALRQHMAA-QSDRWALAL--ED---GKLLAAVNQTLVS-FDHPLTDG-DEVAFFP 76 (81)
T ss_dssp EEEEC-SC-CSBHHHHHHHHHT-TCHHHHHHH--CC---TTCEEEETTEECC-TTCBCCTT-CEEEEEC
T ss_pred eEEEc-CC-CCCHHHHHHHHHH-HChhHHHHh--cC---CCEEEEECCEECC-CCCCCCCC-CEEEEeC
Confidence 45566 55 7899999999874 334333111 11 1368999998763 25666665 4454443
No 141
>3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A*
Probab=48.85 E-value=3.3 Score=39.25 Aligned_cols=20 Identities=20% Similarity=0.441 Sum_probs=16.8
Q ss_pred cccccCcccCcccCCCCCcc
Q 023670 187 DGMYECILCACCSTSCPSYW 206 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~~ 206 (279)
.+..+|+.||.|..+||...
T Consensus 298 Id~~~C~~Cg~Ci~~CP~al 317 (437)
T 3or1_A 298 IDNKNCTRCMHCINTMPRAL 317 (437)
T ss_dssp ECGGGCCCCSHHHHHCTTTE
T ss_pred EccccCCchhhhHhhCcHhh
Confidence 35679999999999999754
No 142
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=48.77 E-value=84 Score=23.67 Aligned_cols=67 Identities=7% Similarity=-0.017 Sum_probs=37.2
Q ss_pred EEEEeccC--CCchHHHHHHHcccCCCCCccccCCCC-CCccCeeEEEECCeeec---cccccccCCCCceEEee
Q 023670 67 EFEINLKE--CGPMVLDALIKIKSEIDPSLTFRRSCR-EGICGSCAMNIDGCNGL---ACLTKISPSGSASTITP 135 (279)
Q Consensus 67 ~~~v~~~~--~g~tvLdal~~~~~~~dptl~~~~~c~-~g~CG~C~v~inG~~~l---AC~t~v~~g~~~~~iep 135 (279)
.++|+++. .+.||-|+|..+...+ |.+..+--.. ...=.-..|.|||+.+. .=.|++++| +++.|-|
T Consensus 31 ~~~vel~~~~~~~TV~~Ll~~L~~~~-~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gldt~L~dG-DeV~iip 103 (114)
T 1wgk_A 31 KHQVALPGQEEPWDIRNLLVWIKKNL-LKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQ-DSILFIS 103 (114)
T ss_dssp EEEEEECCCSSCCBHHHHHHHHTTTT-CCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTTTCBCCSS-EEEEEEE
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHc-cchhHhhCccCCcccCCeEEEECCeeeeccCCcCcCCCCC-CEEEEeC
Confidence 44566652 1469999999887433 3331111000 01223368999998653 456778876 3455544
No 143
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=48.16 E-value=80 Score=23.29 Aligned_cols=75 Identities=23% Similarity=0.261 Sum_probs=46.0
Q ss_pred eeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEE--CCe-eecccccc
Q 023670 47 TKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNI--DGC-NGLACLTK 123 (279)
Q Consensus 47 ~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~i--nG~-~~lAC~t~ 123 (279)
...+++|= |--|.=.|.+.+ |+|+-|||.++-. -|.- .+-.|+|-. +|+ ....=.|-
T Consensus 17 ~~~irvhL--------PNqQrT~V~Vrp-G~tlrdAL~KaLk-------~R~L----~pe~C~Vy~~~~~~~~~IdWdtD 76 (95)
T 2l05_A 17 KPIVRVFL--------PNKQRTVVPARC-GVTVRDSLKKALM-------MRGL----IPECCAVYRIQDGEKKPIGWDTD 76 (95)
T ss_dssp SCEEEEEE--------TTTEEEEEECCT-TCBHHHHHHHHHH-------HHTC----CGGGEEEEEEETTEEEEECTTSB
T ss_pred ccEEEEEC--------CCCCeEEEEecC-CcCHHHHHHHHHH-------HcCC----CHHHcEEEEcCCCCccccchhHh
Confidence 34677765 334778899988 9999999998642 1111 122488884 463 22222222
Q ss_pred ccC-CCCceEEeeCCCCcc
Q 023670 124 ISP-SGSASTITPLPHMFV 141 (279)
Q Consensus 124 v~~-g~~~~~iepl~~~~v 141 (279)
+.. .++++.+|-+.+||+
T Consensus 77 i~~L~~eEL~Ve~ld~~P~ 95 (95)
T 2l05_A 77 ISWLTGEELHVEVLENVPL 95 (95)
T ss_dssp GGGGTTCEEEEEESCCSCC
T ss_pred hhhccCcEEEEEEecCCCC
Confidence 221 257888888888774
No 144
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=45.60 E-value=4.1 Score=39.60 Aligned_cols=19 Identities=26% Similarity=0.614 Sum_probs=16.1
Q ss_pred ccccCcccCcccCCCCCcc
Q 023670 188 GMYECILCACCSTSCPSYW 206 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~~~ 206 (279)
+..+||.||.|...||...
T Consensus 549 ~~~~Ci~C~~C~~~cp~~~ 567 (584)
T 2gmh_A 549 NAQNCVHCKTCDIKDPSQN 567 (584)
T ss_dssp CGGGCCCCCHHHHHCTTCC
T ss_pred eCCCCcCCCCchhhCCCCC
Confidence 4568999999999999753
No 145
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=44.16 E-value=8.1 Score=40.21 Aligned_cols=29 Identities=28% Similarity=0.596 Sum_probs=25.4
Q ss_pred ccCchhhh--hhhhhCCCCCChHHHHHHHHH
Q 023670 246 LYRCHTIL--NCARACPKGLNPGKQIINIKQ 274 (279)
Q Consensus 246 ~~~C~~Cg--~C~~vCP~gi~~~~~I~~lR~ 274 (279)
..+|..|+ -|...||.++++.+.|..+++
T Consensus 76 a~rc~~c~~~~C~~~CP~~~~ip~~~~~~~~ 106 (1025)
T 1gte_A 76 AMRCLKCADAPCQKSCPTHLDIKSFITSISN 106 (1025)
T ss_dssp HHHSCCCTTCHHHHTSTTCCCHHHHHHHHHT
T ss_pred HHHhcCCCCCccccCCCCCCCHHHHHHHHHC
Confidence 46799998 699999999999999988763
No 146
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=41.60 E-value=6.7 Score=38.61 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=16.4
Q ss_pred CccCchhhhhhhhhCCCCC
Q 023670 245 KLYRCHTILNCARACPKGL 263 (279)
Q Consensus 245 ~~~~C~~Cg~C~~vCP~gi 263 (279)
....|+.||-|+..||.++
T Consensus 51 ~~~~c~~~~~~~~~cp~~~ 69 (608)
T 3j16_B 51 SEILCIGCGICVKKCPFDA 69 (608)
T ss_dssp CTTTCCCCCHHHHHCSSCC
T ss_pred ehhhccccccccccCCccc
Confidence 3468999999999999874
No 147
>2bb6_A TCII, TC II, transcobalamin II; alpha_6 - alpha_6 barrel, transport protein; HET: B12; 2.00A {Bos taurus} PDB: 2bbc_A* 2v3n_A* 2v3p_A* 2bb5_A*
Probab=41.51 E-value=24 Score=33.06 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=30.4
Q ss_pred ceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccC
Q 023670 46 DTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRR 98 (279)
Q Consensus 46 ~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~ 98 (279)
-.|+++|+ + ... -..+.|.+++ |.+++++|+++.. . |.|.|..
T Consensus 317 I~VtytV~--~---~~~--~~~~~Vtv~~-gssll~vLk~A~e-~-~~F~F~~ 359 (414)
T 2bb6_A 317 IDVLLKVS--G---ISP--SYRHSVSVPA-GSSLEDILKNAQE-H-GRFRFRT 359 (414)
T ss_dssp EEEEEEEE--S---SSS--CEEEEEEEET-TCCHHHHHHHHHH-S-SSCCEEE
T ss_pred EEEEEEEe--e---CCC--ccceEEEecC-CCCHHHHHHHHHh-c-cCCceEe
Confidence 35677776 2 222 3566788888 9999999999874 3 7777754
No 148
>2pmv_A Gastric intrinsic factor; cobalamin transport protein alpha6-alpha6 motif two domain P transport protein; HET: NAG B12; 2.60A {Homo sapiens} PDB: 3kq4_A*
Probab=39.88 E-value=28 Score=32.48 Aligned_cols=29 Identities=21% Similarity=0.482 Sum_probs=24.2
Q ss_pred EEEeccCCCchHHHHHHHcccCCCCCccccC
Q 023670 68 FEINLKECGPMVLDALIKIKSEIDPSLTFRR 98 (279)
Q Consensus 68 ~~v~~~~~g~tvLdal~~~~~~~dptl~~~~ 98 (279)
|.|.+++ |.++|++|+++. +.+|.|.|..
T Consensus 315 ~~Vtv~~-gssll~vLk~a~-e~n~~F~F~~ 343 (399)
T 2pmv_A 315 INVSVKS-GSVLLVVLEEAQ-RKNPMFKFET 343 (399)
T ss_dssp EEEESSS-CSCHHHHHHHHH-HSCCSCCEEE
T ss_pred eEEEecC-CCCHHHHHHHHH-HhCcCCceEE
Confidence 6899998 999999999987 4668887755
No 149
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=34.63 E-value=1e+02 Score=22.28 Aligned_cols=66 Identities=23% Similarity=0.242 Sum_probs=39.4
Q ss_pred CceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEEC--Ce-eeccccccccC-CCCceEEeeCCC
Q 023670 63 PELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNID--GC-NGLACLTKISP-SGSASTITPLPH 138 (279)
Q Consensus 63 ~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~in--G~-~~lAC~t~v~~-g~~~~~iepl~~ 138 (279)
|--|.=.|++.+ |+|+-|||.++-... .|. +-.|+|-.- |+ ....=.|-+.. .++++.+|-+.+
T Consensus 15 Pn~QrT~V~Vrp-G~tlrdaL~KaLk~R--~L~---------pe~C~Vy~~~~~~~~~IdWdtDi~~L~~eEL~Ve~ld~ 82 (86)
T 1wxm_A 15 PNKQRTVVTVRD-GMSVYDSLDKALKVR--GLN---------QDCCVVYRLIKGRKTVTAWDTAIAPLDGEELIVEVLSG 82 (86)
T ss_dssp SSSCEEEEECCS-SCBSHHHHHHHHHTT--TCC---------SSSEEEEEESSSCEEEECSSSBSTTCSSCEEEEEECCS
T ss_pred CCCCeEEEEecC-CcCHHHHHHHHHHHc--CCC---------HHHeEEEEcCCCCccccchhHhhhhccCcEEEEEEccc
Confidence 444777889988 999999999874210 111 224888844 52 22222222221 146788887777
Q ss_pred Cc
Q 023670 139 MF 140 (279)
Q Consensus 139 ~~ 140 (279)
||
T Consensus 83 ~~ 84 (86)
T 1wxm_A 83 PS 84 (86)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 150
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=34.45 E-value=7.8 Score=39.17 Aligned_cols=18 Identities=11% Similarity=0.082 Sum_probs=15.6
Q ss_pred ccCcccCcccCCCCCccc
Q 023670 190 YECILCACCSTSCPSYWW 207 (279)
Q Consensus 190 ~~CI~CG~C~~~CP~~~~ 207 (279)
..|+.||.|+.+||+...
T Consensus 218 ~~C~~CG~Cv~vCP~gAl 235 (783)
T 3i9v_3 218 LPSGFSGNITDICPVGAL 235 (783)
T ss_dssp CCSTTTTTHHHHCSSSSE
T ss_pred CCCccchhHHhhcccCce
Confidence 379999999999998654
No 151
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=33.39 E-value=1.1e+02 Score=22.05 Aligned_cols=63 Identities=14% Similarity=0.047 Sum_probs=36.3
Q ss_pred EEEEEecc--CCCchHHHHHHHcccCCCCCcc-----c-cCC-CCCCccCeeEEEECCeeec---cccccccCCCCceEE
Q 023670 66 KEFEINLK--ECGPMVLDALIKIKSEIDPSLT-----F-RRS-CREGICGSCAMNIDGCNGL---ACLTKISPSGSASTI 133 (279)
Q Consensus 66 ~~~~v~~~--~~g~tvLdal~~~~~~~dptl~-----~-~~~-c~~g~CG~C~v~inG~~~l---AC~t~v~~g~~~~~i 133 (279)
.+.+++++ + +.||-+++.++... .|.+- + ..+ -+ ..+.|-|||+.+. .=.|++.+| +++.+
T Consensus 20 ~~~~~~l~~~~-~~Tv~~L~~~L~~~-~~~~~~~l~~~~~~~~lr----~~~~v~VN~~~~~~~~~~d~~L~dg-DeVa~ 92 (99)
T 2qjl_A 20 RVHKIKMDKED-PVTVGDLIDHIVST-MINNPNDVSIFIEDDSIR----PGIITLINDTDWELEGEKDYILEDG-DIISF 92 (99)
T ss_dssp CEEEEEECSCS-CCBHHHHHHHHHHH-TCSSGGGHHHHEETTEEC----TTEEEEETTEEGGGGTGGGCBCCTT-CEEEE
T ss_pred cEEEEecCCCC-CCcHHHHHHHHHHH-CchhhHHHhhhccCCccc----cCeEEEECCEEccccCCCCcCcCCC-CEEEE
Confidence 45566665 5 78999988887532 23221 1 111 11 1278999998753 235677776 44554
Q ss_pred ee
Q 023670 134 TP 135 (279)
Q Consensus 134 ep 135 (279)
-|
T Consensus 93 ~P 94 (99)
T 2qjl_A 93 TS 94 (99)
T ss_dssp EE
T ss_pred EC
Confidence 43
No 152
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=32.73 E-value=6 Score=38.93 Aligned_cols=19 Identities=32% Similarity=0.655 Sum_probs=15.7
Q ss_pred cccccCcccCcccCCCCCc
Q 023670 187 DGMYECILCACCSTSCPSY 205 (279)
Q Consensus 187 ~~~~~CI~CG~C~~~CP~~ 205 (279)
-.-..||.||.|+.-||..
T Consensus 50 i~~~~c~~~~~~~~~cp~~ 68 (608)
T 3j16_B 50 ISEILCIGCGICVKKCPFD 68 (608)
T ss_dssp ECTTTCCCCCHHHHHCSSC
T ss_pred EehhhccccccccccCCcc
Confidence 3445799999999999964
No 153
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=31.67 E-value=34 Score=22.91 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=26.4
Q ss_pred eccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECCeeeccccccccCC
Q 023670 71 NLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKISPS 127 (279)
Q Consensus 71 ~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG~~~lAC~t~v~~g 127 (279)
++++ |.|++|.+..++.. +... .-+++|||+.+-- .+++.+|
T Consensus 14 ~~~~-g~T~~dla~~i~~~----l~~~---------~vaa~vNg~lvdl-~~~L~~~ 55 (73)
T 2kmm_A 14 RLPQ-GATALDFAYSLHSD----LGDH---------CIGAKVNHKLVPL-SYVLNSG 55 (73)
T ss_dssp EECT-TCBHHHHHHHHCSH----HHHT---------EEEEEETTEECCT-TCBCCSS
T ss_pred EcCC-CCcHHHHHHHHhhc----cccc---------eEEEEECCEEeCC-CcCcCCC
Confidence 3446 89999999988521 2111 2678999985422 3666654
No 154
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=31.38 E-value=1.6e+02 Score=21.75 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=45.9
Q ss_pred eEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcccCCCCCccccCCCCCCccCeeEEEECC---eeeccccccc
Q 023670 48 KKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIKSEIDPSLTFRRSCREGICGSCAMNIDG---CNGLACLTKI 124 (279)
Q Consensus 48 ~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~~~~dptl~~~~~c~~g~CG~C~v~inG---~~~lAC~t~v 124 (279)
-.+|+|= |--|.=.|++.+ |+|+-|||.++-... .| .+-.|+|-.-+ +....=.|-+
T Consensus 14 ~~irvhL--------PNqQrT~V~Vrp-G~tlrdaL~KaLk~R--~L---------~pe~C~Vy~~~~~~~~~I~WdtDi 73 (96)
T 3ny5_A 14 PIVRVFL--------PNKQRTVVPARC-GVTVRDSLKKALMMR--GL---------IPECCAVYRIQDGEKKPIGWDTDI 73 (96)
T ss_dssp CEEEEEE--------TTTEEEEEECCT-TCBHHHHHHHHHHTT--TC---------CGGGEEEEECC---CEEECTTBBG
T ss_pred CEEEEEC--------CCCceEEEEecC-CcCHHHHHHHHHHHc--CC---------ChHHeEEEEccCCCcCcccccccc
Confidence 4567654 334778899988 999999999974210 11 12348888653 1222222222
Q ss_pred cC-CCCceEEeeCCCCcch
Q 023670 125 SP-SGSASTITPLPHMFVI 142 (279)
Q Consensus 125 ~~-g~~~~~iepl~~~~vi 142 (279)
.. .++++.+|=|.++|.+
T Consensus 74 ~~L~geEL~Ve~ld~~plt 92 (96)
T 3ny5_A 74 SWLTGEELHVEVLENVPLT 92 (96)
T ss_dssp GGGTTCEEEEEECCCCCBC
T ss_pred hhcccceEEehhhhcCCCc
Confidence 21 2467888988888864
No 155
>2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D
Probab=28.19 E-value=8.9 Score=33.49 Aligned_cols=17 Identities=29% Similarity=0.790 Sum_probs=14.9
Q ss_pred ccccCcccCcccCCCCC
Q 023670 188 GMYECILCACCSTSCPS 204 (279)
Q Consensus 188 ~~~~CI~CG~C~~~CP~ 204 (279)
+..+|+.||.|..+||.
T Consensus 199 d~~~C~~C~~C~~vCp~ 215 (265)
T 2pa8_D 199 NELSCTLCEECLRYCNG 215 (265)
T ss_dssp CGGGCCCCCHHHHHHTT
T ss_pred ccccCCCchHHHHhCCC
Confidence 45789999999999994
No 156
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=25.31 E-value=70 Score=25.31 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=22.6
Q ss_pred CCceeEEEEEeeCCCCCCCCceEEEEEeccCCCchHHHHHHHcc
Q 023670 44 NTDTKKFQIYRWNPDSPSKPELKEFEINLKECGPMVLDALIKIK 87 (279)
Q Consensus 44 ~~~~~~~~i~R~~p~~~~~~~~~~~~v~~~~~g~tvLdal~~~~ 87 (279)
.+..++|.|.-++ -+.|.+++++ ..||.+.=.+|.
T Consensus 17 ~~~~m~i~Vk~~~--------g~~~~l~v~~-~~tV~~lK~~I~ 51 (172)
T 3u30_A 17 RGSHMQIFVKTLT--------GKTITLEVEP-SDTIENVKAKIQ 51 (172)
T ss_dssp --CCEEEEEEETT--------TEEEEEEECT-TCBHHHHHHHHH
T ss_pred CCCcEEEEEEeCC--------CCEEEEEECC-CCcHHHHHHHHH
Confidence 3445556664444 2667888888 789998877764
No 157
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=24.75 E-value=63 Score=22.50 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=32.7
Q ss_pred ccCCCchHHHHHHHcccCCCCCcccc--CCCCCCccCeeEEEECCeeec---cccccccCCCCceEEe
Q 023670 72 LKECGPMVLDALIKIKSEIDPSLTFR--RSCREGICGSCAMNIDGCNGL---ACLTKISPSGSASTIT 134 (279)
Q Consensus 72 ~~~~g~tvLdal~~~~~~~dptl~~~--~~c~~g~CG~C~v~inG~~~l---AC~t~v~~g~~~~~ie 134 (279)
++. +.||-+++..+... .|.|.-. ... .|.=..+.|.|||+.+. -=.+++.+| +++.|-
T Consensus 21 ~~~-~~tv~~ll~~l~~~-~p~~~~~~l~~~-~g~~~~v~v~vN~~~v~~~~~~~~~l~~g-D~V~i~ 84 (90)
T 2g1e_A 21 FNG-ISKISELLERLKVE-YGSEFTKQMYDG-NNLFKNVIILVNGNNITSMKGLDTEIKDD-DKIDLF 84 (90)
T ss_dssp ESS-CCBHHHHHHHHHHH-SCHHHHHHHCCS-SCSTTTCEEEESSSBGGGTCSSSCBCCTT-CEEEEE
T ss_pred cCC-CCcHHHHHHHHHHH-Ccchhhhccccc-cCcCcceEEEECCEEccccCCCCcCCCCC-CEEEEe
Confidence 335 68999999988642 2433221 000 01112479999998664 235566665 445444
No 158
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=20.27 E-value=18 Score=35.49 Aligned_cols=12 Identities=42% Similarity=1.298 Sum_probs=0.0
Q ss_pred CcccCcccCCCC
Q 023670 192 CILCACCSTSCP 203 (279)
Q Consensus 192 CI~CG~C~~~CP 203 (279)
||.||.|+..||
T Consensus 69 c~gc~~~~~~~p 80 (607)
T 3bk7_A 69 CTGCGICVHKCP 80 (607)
T ss_dssp CCCCCHHHHHCS
T ss_pred cCccccccCCCC
No 159
>2kmz_A Tumor necrosis factor receptor superfamily member; FN14, tweak, TNF receptor, CRD, tnfrsf12A, angiogenesis, APO cell adhesion; NMR {Homo sapiens}
Probab=20.17 E-value=33 Score=22.22 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=10.7
Q ss_pred cccccCcccCcccC
Q 023670 187 DGMYECILCACCST 200 (279)
Q Consensus 187 ~~~~~CI~CG~C~~ 200 (279)
.++.+|+.|..|-.
T Consensus 17 ~DLdKCmdcs~C~~ 30 (53)
T 2kmz_A 17 ADLDKCMDCASCRA 30 (53)
T ss_dssp TTTTCCBCSTTCSS
T ss_pred hhhhhhhccccCCC
Confidence 46789999977654
Done!