Query 023671
Match_columns 279
No_of_seqs 196 out of 1655
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 05:46:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023671.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023671hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01337 MDH_glyoxysomal_mitoch 100.0 4E-58 8.6E-63 422.8 23.9 235 42-277 1-236 (310)
2 TIGR01772 MDH_euk_gproteo mala 100.0 6.4E-57 1.4E-61 415.3 23.6 235 43-277 1-235 (312)
3 COG0039 Mdh Malate/lactate deh 100.0 5.8E-56 1.3E-60 405.5 22.4 226 42-277 1-239 (313)
4 PLN00106 malate dehydrogenase 100.0 7.7E-55 1.7E-59 403.0 27.1 246 32-277 9-254 (323)
5 KOG1495 Lactate dehydrogenase 100.0 2.3E-55 4.9E-60 386.9 22.0 224 41-277 20-261 (332)
6 cd05290 LDH_3 A subgroup of L- 100.0 7.9E-54 1.7E-58 394.5 23.2 223 43-277 1-241 (307)
7 PTZ00325 malate dehydrogenase; 100.0 3.4E-52 7.3E-57 385.2 24.9 237 39-277 6-242 (321)
8 cd05293 LDH_1 A subgroup of L- 100.0 1.7E-52 3.6E-57 386.6 22.4 226 41-277 3-244 (312)
9 PLN02602 lactate dehydrogenase 100.0 8E-52 1.7E-56 386.7 23.8 225 42-277 38-278 (350)
10 TIGR01759 MalateDH-SF1 malate 100.0 9.8E-52 2.1E-56 382.7 21.6 227 40-277 2-250 (323)
11 PRK05086 malate dehydrogenase; 100.0 5.5E-51 1.2E-55 376.7 24.4 234 42-277 1-236 (312)
12 KOG1494 NAD-dependent malate d 100.0 3.9E-51 8.4E-56 361.7 21.6 262 8-277 3-265 (345)
13 PRK05442 malate dehydrogenase; 100.0 5.1E-51 1.1E-55 378.4 20.0 227 40-277 3-251 (326)
14 TIGR01771 L-LDH-NAD L-lactate 100.0 5.2E-51 1.1E-55 374.7 19.1 220 46-277 1-236 (299)
15 PRK00066 ldh L-lactate dehydro 100.0 8E-50 1.7E-54 369.4 23.4 225 41-277 6-245 (315)
16 PLN00112 malate dehydrogenase 100.0 2.8E-49 6.1E-54 377.5 22.3 228 39-277 98-347 (444)
17 cd00704 MDH Malate dehydrogena 100.0 2.1E-49 4.5E-54 367.5 20.2 224 43-277 2-250 (323)
18 TIGR01757 Malate-DH_plant mala 100.0 3.5E-49 7.5E-54 371.8 21.4 228 39-277 42-291 (387)
19 cd05291 HicDH_like L-2-hydroxy 100.0 7.3E-49 1.6E-53 361.9 22.0 224 42-277 1-239 (306)
20 PTZ00117 malate dehydrogenase; 100.0 3.1E-48 6.7E-53 359.5 24.8 228 40-277 4-246 (319)
21 cd01338 MDH_choloroplast_like 100.0 1.2E-48 2.5E-53 362.4 21.2 227 40-277 1-249 (322)
22 PTZ00082 L-lactate dehydrogena 100.0 3.7E-48 8E-53 359.1 24.1 228 40-277 5-252 (321)
23 cd00300 LDH_like L-lactate deh 100.0 2E-48 4.3E-53 358.1 21.5 223 44-277 1-234 (300)
24 TIGR01763 MalateDH_bact malate 100.0 3E-48 6.5E-53 357.5 21.9 224 42-277 2-237 (305)
25 TIGR01758 MDH_euk_cyt malate d 100.0 6.3E-48 1.4E-52 357.7 21.3 227 43-277 1-250 (324)
26 cd05292 LDH_2 A subgroup of L- 100.0 5.4E-47 1.2E-51 349.7 23.2 224 42-277 1-240 (308)
27 cd01336 MDH_cytoplasmic_cytoso 100.0 3.3E-46 7.1E-51 346.6 20.7 227 40-277 1-253 (325)
28 cd05294 LDH-like_MDH_nadp A la 100.0 1.3E-45 2.8E-50 340.6 22.3 226 42-277 1-240 (309)
29 PRK06223 malate dehydrogenase; 100.0 4.3E-45 9.4E-50 336.4 22.8 227 41-277 2-238 (307)
30 cd01339 LDH-like_MDH L-lactate 100.0 2.8E-45 6E-50 337.1 21.3 224 44-277 1-234 (300)
31 PLN00135 malate dehydrogenase 100.0 5E-44 1.1E-48 329.1 18.7 199 69-277 15-233 (309)
32 cd05295 MDH_like Malate dehydr 100.0 4.3E-44 9.4E-49 341.9 18.0 225 39-277 121-379 (452)
33 TIGR01756 LDH_protist lactate 100.0 2.7E-42 5.9E-47 318.3 18.4 202 63-277 13-234 (313)
34 cd00650 LDH_MDH_like NAD-depen 100.0 7.4E-40 1.6E-44 295.8 19.7 181 44-230 1-186 (263)
35 PF00056 Ldh_1_N: lactate/mala 100.0 5E-34 1.1E-38 235.3 12.4 139 42-185 1-141 (141)
36 KOG1496 Malate dehydrogenase [ 100.0 2.3E-33 5E-38 244.3 14.0 231 40-277 3-255 (332)
37 cd05197 GH4_glycoside_hydrolas 99.9 5.9E-26 1.3E-30 217.6 14.0 177 42-233 1-207 (425)
38 PRK15076 alpha-galactosidase; 99.9 1.1E-25 2.4E-30 216.2 12.6 166 41-219 1-200 (431)
39 cd05296 GH4_P_beta_glucosidase 99.9 1.3E-24 2.8E-29 208.1 14.7 167 42-219 1-198 (419)
40 cd05297 GH4_alpha_glucosidase_ 99.9 8.5E-22 1.8E-26 189.3 14.9 168 42-219 1-198 (423)
41 cd05298 GH4_GlvA_pagL_like Gly 99.9 7.8E-21 1.7E-25 182.7 15.4 168 42-219 1-197 (437)
42 PF02056 Glyco_hydro_4: Family 99.8 2.4E-19 5.2E-24 153.2 13.9 152 43-204 1-183 (183)
43 PF02866 Ldh_1_C: lactate/mala 99.8 3.8E-20 8.3E-25 157.5 8.1 88 187-277 1-99 (174)
44 COG1486 CelF Alpha-galactosida 99.8 5.3E-19 1.1E-23 167.8 13.9 170 40-219 2-201 (442)
45 COG1004 Ugd Predicted UDP-gluc 99.0 1.9E-08 4.1E-13 94.7 14.7 115 42-168 1-131 (414)
46 PF02737 3HCDH_N: 3-hydroxyacy 98.9 2.8E-09 6.1E-14 91.3 7.9 117 43-187 1-136 (180)
47 COG1250 FadB 3-hydroxyacyl-CoA 98.9 1.1E-08 2.3E-13 94.4 9.9 141 41-206 3-178 (307)
48 PF03721 UDPG_MGDP_dh_N: UDP-g 98.8 1.8E-08 3.9E-13 86.7 8.3 124 42-177 1-140 (185)
49 PRK07066 3-hydroxybutyryl-CoA 98.8 7.4E-08 1.6E-12 89.7 12.2 120 41-186 7-140 (321)
50 PF01073 3Beta_HSD: 3-beta hyd 98.7 1E-07 2.2E-12 87.1 11.1 109 46-154 2-112 (280)
51 PRK07819 3-hydroxybutyryl-CoA 98.7 1.5E-07 3.2E-12 86.3 11.9 118 41-186 5-142 (286)
52 PRK08293 3-hydroxybutyryl-CoA 98.7 2.7E-07 5.9E-12 84.4 12.5 120 41-186 3-141 (287)
53 TIGR02437 FadB fatty oxidation 98.7 8.6E-08 1.9E-12 98.1 10.0 118 40-186 312-449 (714)
54 TIGR02441 fa_ox_alpha_mit fatt 98.7 1.1E-07 2.3E-12 97.7 10.1 118 40-186 334-471 (737)
55 TIGR02440 FadJ fatty oxidation 98.6 2.7E-07 5.8E-12 94.3 12.4 119 40-186 303-441 (699)
56 PRK11730 fadB multifunctional 98.6 2.7E-07 5.9E-12 94.5 11.8 117 41-186 313-449 (715)
57 TIGR01915 npdG NADPH-dependent 98.6 1.2E-06 2.5E-11 77.2 13.7 100 42-163 1-106 (219)
58 PRK15181 Vi polysaccharide bio 98.6 1.4E-06 2.9E-11 81.6 15.0 169 40-218 14-200 (348)
59 PRK11154 fadJ multifunctional 98.6 4.4E-07 9.6E-12 92.9 11.8 119 40-186 308-446 (708)
60 PLN02353 probable UDP-glucose 98.6 1E-06 2.2E-11 86.2 13.3 123 41-168 1-138 (473)
61 PRK05808 3-hydroxybutyryl-CoA 98.6 1.3E-06 2.9E-11 79.6 13.2 118 41-186 3-139 (282)
62 PLN02166 dTDP-glucose 4,6-dehy 98.5 9.7E-07 2.1E-11 85.6 12.9 112 41-158 120-233 (436)
63 KOG2304 3-hydroxyacyl-CoA dehy 98.5 1.2E-07 2.5E-12 83.2 5.1 120 40-186 10-153 (298)
64 PRK06035 3-hydroxyacyl-CoA deh 98.5 1.7E-06 3.8E-11 79.2 12.2 117 42-186 4-142 (291)
65 TIGR02622 CDP_4_6_dhtase CDP-g 98.5 4.5E-06 9.7E-11 77.9 14.9 119 39-159 2-127 (349)
66 KOG1502 Flavonol reductase/cin 98.5 2.4E-06 5.2E-11 79.3 12.2 117 40-161 5-130 (327)
67 PLN02427 UDP-apiose/xylose syn 98.4 1.9E-06 4.2E-11 81.6 11.7 116 39-158 12-135 (386)
68 PF02719 Polysacc_synt_2: Poly 98.4 1.6E-07 3.5E-12 86.0 4.2 121 44-165 1-139 (293)
69 PF01210 NAD_Gly3P_dh_N: NAD-d 98.4 8.4E-07 1.8E-11 74.1 7.9 93 43-157 1-102 (157)
70 PLN02695 GDP-D-mannose-3',5'-e 98.4 2.3E-06 4.9E-11 81.0 11.4 170 40-218 20-202 (370)
71 PLN02662 cinnamyl-alcohol dehy 98.4 5.4E-06 1.2E-10 75.9 13.5 114 41-157 4-125 (322)
72 PLN00198 anthocyanidin reducta 98.4 6.4E-06 1.4E-10 76.4 14.1 176 40-217 8-202 (338)
73 TIGR02279 PaaC-3OHAcCoADH 3-hy 98.4 1.7E-06 3.7E-11 85.3 10.2 104 40-165 4-125 (503)
74 PLN02650 dihydroflavonol-4-red 98.4 7.1E-06 1.5E-10 76.6 13.6 178 39-218 3-198 (351)
75 TIGR03589 PseB UDP-N-acetylglu 98.4 5E-06 1.1E-10 77.1 12.3 113 41-158 4-124 (324)
76 PLN02206 UDP-glucuronate decar 98.4 5.3E-06 1.1E-10 80.6 12.8 113 40-158 118-232 (442)
77 PRK09260 3-hydroxybutyryl-CoA 98.4 3.4E-06 7.3E-11 77.2 10.8 100 42-163 2-120 (288)
78 PRK07530 3-hydroxybutyryl-CoA 98.4 2.5E-06 5.4E-11 78.1 10.0 101 41-164 4-123 (292)
79 PRK06130 3-hydroxybutyryl-CoA 98.3 3.9E-06 8.4E-11 77.4 10.9 102 41-164 4-119 (311)
80 COG1086 Predicted nucleoside-d 98.3 6.6E-06 1.4E-10 80.8 12.7 125 40-165 249-387 (588)
81 TIGR01181 dTDP_gluc_dehyt dTDP 98.3 1.1E-05 2.3E-10 73.3 13.4 164 43-217 1-184 (317)
82 PRK08125 bifunctional UDP-gluc 98.3 7E-06 1.5E-10 83.4 13.4 178 24-217 301-497 (660)
83 PRK08268 3-hydroxy-acyl-CoA de 98.3 5.3E-06 1.2E-10 81.9 11.9 119 41-187 7-144 (507)
84 PRK06129 3-hydroxyacyl-CoA deh 98.3 1.3E-05 2.8E-10 74.1 13.3 102 41-163 2-121 (308)
85 PLN02214 cinnamoyl-CoA reducta 98.3 1.2E-05 2.6E-10 75.1 13.1 109 40-155 9-124 (342)
86 COG0451 WcaG Nucleoside-diphos 98.3 7.9E-06 1.7E-10 74.1 11.4 168 43-219 2-178 (314)
87 CHL00194 ycf39 Ycf39; Provisio 98.3 5.8E-06 1.3E-10 76.3 10.5 107 42-156 1-108 (317)
88 PRK10217 dTDP-glucose 4,6-dehy 98.3 1.9E-05 4.1E-10 73.6 13.8 169 41-218 1-195 (355)
89 PLN02545 3-hydroxybutyryl-CoA 98.3 6.5E-06 1.4E-10 75.5 10.4 101 41-164 4-123 (295)
90 PRK11908 NAD-dependent epimera 98.3 1E-05 2.2E-10 75.4 11.8 109 41-158 1-117 (347)
91 PRK07531 bifunctional 3-hydrox 98.2 1.1E-05 2.4E-10 79.5 12.3 103 42-165 5-121 (495)
92 PF03807 F420_oxidored: NADP o 98.2 4.1E-06 9E-11 63.6 7.0 94 43-160 1-96 (96)
93 PLN02572 UDP-sulfoquinovose sy 98.2 1.7E-05 3.6E-10 77.1 12.4 178 38-218 44-263 (442)
94 TIGR03026 NDP-sugDHase nucleot 98.2 3.1E-05 6.7E-10 74.4 14.2 119 42-174 1-137 (411)
95 TIGR03466 HpnA hopanoid-associ 98.2 1.3E-05 2.9E-10 73.1 11.1 109 42-155 1-110 (328)
96 PRK10084 dTDP-glucose 4,6 dehy 98.2 2.8E-05 6E-10 72.4 12.9 175 42-218 1-202 (352)
97 PRK15057 UDP-glucose 6-dehydro 98.1 3.1E-05 6.6E-10 74.1 12.6 113 42-168 1-128 (388)
98 COG1087 GalE UDP-glucose 4-epi 98.1 5.2E-05 1.1E-09 69.5 13.3 162 42-217 1-176 (329)
99 PLN02260 probable rhamnose bio 98.1 0.00011 2.4E-09 74.7 16.8 180 38-218 3-194 (668)
100 PLN02989 cinnamyl-alcohol dehy 98.1 7.8E-05 1.7E-09 68.6 13.9 116 41-158 5-128 (325)
101 PLN02653 GDP-mannose 4,6-dehyd 98.1 3.3E-05 7.2E-10 71.7 11.0 112 37-150 2-126 (340)
102 PLN02896 cinnamyl-alcohol dehy 98.1 4.2E-05 9.2E-10 71.5 11.7 174 40-218 9-211 (353)
103 PRK11150 rfaD ADP-L-glycero-D- 98.1 5.9E-05 1.3E-09 68.9 12.3 108 44-158 2-115 (308)
104 PLN02778 3,5-epimerase/4-reduc 98.1 6.3E-05 1.4E-09 69.1 12.5 95 39-156 7-108 (298)
105 PRK00094 gpsA NAD(P)H-dependen 98.0 4.9E-05 1.1E-09 70.1 11.6 101 41-163 1-110 (325)
106 PF13460 NAD_binding_10: NADH( 98.0 6.7E-05 1.5E-09 63.1 11.5 91 44-155 1-95 (183)
107 PRK10675 UDP-galactose-4-epime 98.0 4.6E-05 1E-09 70.3 11.4 113 42-158 1-123 (338)
108 PRK11064 wecC UDP-N-acetyl-D-m 98.0 8.3E-05 1.8E-09 71.7 13.5 110 41-168 3-130 (415)
109 PLN02986 cinnamyl-alcohol dehy 98.0 0.00012 2.6E-09 67.3 13.9 106 41-148 5-117 (322)
110 PRK09987 dTDP-4-dehydrorhamnos 98.0 2.5E-05 5.5E-10 71.6 9.2 99 42-158 1-103 (299)
111 TIGR01777 yfcH conserved hypot 98.0 3.8E-05 8.3E-10 68.9 10.1 99 44-151 1-103 (292)
112 COG2085 Predicted dinucleotide 98.0 6.9E-05 1.5E-09 65.4 11.1 96 41-161 1-96 (211)
113 PRK15182 Vi polysaccharide bio 98.0 0.00012 2.5E-09 71.0 13.7 119 39-173 4-136 (425)
114 PF03446 NAD_binding_2: NAD bi 98.0 3.7E-05 8E-10 64.5 9.0 89 41-156 1-92 (163)
115 PLN02583 cinnamoyl-CoA reducta 98.0 0.00015 3.2E-09 66.4 13.5 105 41-149 6-118 (297)
116 PRK06194 hypothetical protein; 98.0 0.00015 3.2E-09 65.4 13.3 158 41-214 6-191 (287)
117 PRK14619 NAD(P)H-dependent gly 98.0 8.1E-05 1.8E-09 68.8 11.2 78 41-159 4-83 (308)
118 PTZ00345 glycerol-3-phosphate 97.9 9.1E-05 2E-09 70.3 11.6 82 26-117 2-101 (365)
119 PRK12921 2-dehydropantoate 2-r 97.9 6.8E-05 1.5E-09 68.6 10.4 117 42-185 1-122 (305)
120 TIGR01472 gmd GDP-mannose 4,6- 97.9 9.6E-05 2.1E-09 68.7 11.6 154 42-205 1-177 (343)
121 PRK07201 short chain dehydroge 97.9 0.00014 3E-09 73.4 13.5 112 42-156 1-123 (657)
122 PLN03209 translocon at the inn 97.9 9.3E-05 2E-09 73.7 11.8 116 41-158 80-208 (576)
123 COG0240 GpsA Glycerol-3-phosph 97.9 8.5E-05 1.8E-09 69.1 10.8 69 41-117 1-79 (329)
124 PRK08229 2-dehydropantoate 2-r 97.9 0.00013 2.8E-09 68.0 11.8 104 41-164 2-113 (341)
125 PRK06522 2-dehydropantoate 2-r 97.9 0.00021 4.5E-09 65.2 12.6 102 42-165 1-107 (304)
126 PLN02686 cinnamoyl-CoA reducta 97.9 9.3E-05 2E-09 70.0 10.6 119 38-158 50-180 (367)
127 TIGR01214 rmlD dTDP-4-dehydror 97.9 8E-05 1.7E-09 67.1 9.6 95 43-158 1-99 (287)
128 KOG1429 dTDP-glucose 4-6-dehyd 97.9 4.3E-05 9.4E-10 69.4 7.4 113 39-157 25-139 (350)
129 PLN02240 UDP-glucose 4-epimera 97.8 0.00028 6.1E-09 65.5 12.7 116 40-158 4-131 (352)
130 PRK14620 NAD(P)H-dependent gly 97.8 0.00017 3.8E-09 66.9 11.1 98 42-163 1-111 (326)
131 PRK13394 3-hydroxybutyrate deh 97.8 0.00019 4.1E-09 63.5 10.4 115 40-158 6-143 (262)
132 KOG1430 C-3 sterol dehydrogena 97.8 0.00022 4.7E-09 67.4 10.9 116 40-158 3-125 (361)
133 PLN02657 3,8-divinyl protochlo 97.8 0.00023 5.1E-09 67.9 11.3 113 39-156 58-180 (390)
134 PLN02725 GDP-4-keto-6-deoxyman 97.8 0.00023 5E-09 64.5 10.8 93 46-156 2-99 (306)
135 PRK12439 NAD(P)H-dependent gly 97.8 0.00022 4.8E-09 66.9 10.8 99 40-163 6-116 (341)
136 TIGR02197 heptose_epim ADP-L-g 97.8 0.00022 4.8E-09 64.8 10.5 109 44-158 1-113 (314)
137 PRK14618 NAD(P)H-dependent gly 97.7 0.00028 6E-09 65.7 11.1 69 41-117 4-82 (328)
138 PRK08643 acetoin reductase; Va 97.7 0.0014 3.1E-08 57.8 15.2 115 42-160 3-140 (256)
139 PRK06249 2-dehydropantoate 2-r 97.7 0.0003 6.5E-09 65.1 10.9 118 39-186 3-127 (313)
140 PRK07417 arogenate dehydrogena 97.7 0.00029 6.4E-09 64.1 10.3 64 42-117 1-65 (279)
141 PF01370 Epimerase: NAD depend 97.7 7.6E-05 1.6E-09 64.8 6.0 166 44-217 1-174 (236)
142 PF01118 Semialdhyde_dh: Semia 97.7 0.00015 3.3E-09 57.7 7.3 72 43-117 1-74 (121)
143 TIGR03376 glycerol3P_DH glycer 97.7 0.00029 6.4E-09 66.3 10.2 71 43-117 1-90 (342)
144 PRK05865 hypothetical protein; 97.7 0.00019 4.2E-09 74.7 9.6 104 42-161 1-105 (854)
145 PRK12829 short chain dehydroge 97.7 0.0013 2.7E-08 58.2 13.4 38 38-77 8-45 (264)
146 TIGR01179 galE UDP-glucose-4-e 97.6 0.0004 8.6E-09 63.1 10.3 107 43-154 1-117 (328)
147 COG1748 LYS9 Saccharopine dehy 97.6 0.00077 1.7E-08 64.3 12.4 75 41-118 1-77 (389)
148 PRK08267 short chain dehydroge 97.6 0.00032 6.9E-09 62.3 9.4 113 42-160 2-137 (260)
149 PRK12429 3-hydroxybutyrate deh 97.6 0.00041 8.8E-09 61.1 10.0 114 41-159 4-140 (258)
150 PRK12549 shikimate 5-dehydroge 97.6 0.00032 7E-09 64.3 9.6 91 22-117 108-200 (284)
151 PRK11199 tyrA bifunctional cho 97.6 0.00043 9.4E-09 65.9 10.6 74 18-117 65-150 (374)
152 PRK07424 bifunctional sterol d 97.6 0.00096 2.1E-08 64.2 12.8 128 17-148 151-291 (406)
153 PRK09135 pteridine reductase; 97.6 0.0016 3.4E-08 56.9 13.2 104 41-147 6-129 (249)
154 PRK11880 pyrroline-5-carboxyla 97.6 0.00046 1E-08 62.1 10.0 96 41-162 2-98 (267)
155 PLN02253 xanthoxin dehydrogena 97.6 0.0015 3.3E-08 58.6 13.3 114 40-159 17-155 (280)
156 PRK07231 fabG 3-ketoacyl-(acyl 97.6 0.0015 3.2E-08 57.2 12.9 36 40-77 4-39 (251)
157 COG0677 WecC UDP-N-acetyl-D-ma 97.6 0.001 2.2E-08 63.1 12.1 114 42-168 10-139 (436)
158 PRK05866 short chain dehydroge 97.6 0.0011 2.3E-08 60.7 12.2 57 18-77 18-74 (293)
159 PRK12384 sorbitol-6-phosphate 97.6 0.0032 6.9E-08 55.7 14.9 117 42-160 3-142 (259)
160 PF10727 Rossmann-like: Rossma 97.6 0.00024 5.1E-09 57.6 6.8 102 40-167 9-115 (127)
161 PRK12320 hypothetical protein; 97.6 0.00061 1.3E-08 69.6 11.3 100 42-158 1-101 (699)
162 PLN00141 Tic62-NAD(P)-related 97.6 0.00061 1.3E-08 60.5 10.1 111 40-158 16-132 (251)
163 PRK07680 late competence prote 97.6 0.00053 1.1E-08 62.2 9.7 97 42-162 1-100 (273)
164 PRK07502 cyclohexadienyl dehyd 97.6 0.00074 1.6E-08 62.3 10.8 69 41-118 6-75 (307)
165 TIGR01746 Thioester-redct thio 97.5 0.00091 2E-08 61.6 11.4 112 43-155 1-133 (367)
166 PLN02688 pyrroline-5-carboxyla 97.5 0.0007 1.5E-08 60.9 10.2 95 42-162 1-99 (266)
167 PRK07102 short chain dehydroge 97.5 0.0013 2.8E-08 57.8 11.7 116 41-159 1-135 (243)
168 PRK07806 short chain dehydroge 97.5 0.00071 1.5E-08 59.5 10.0 115 41-159 6-135 (248)
169 TIGR03206 benzo_BadH 2-hydroxy 97.5 0.0013 2.9E-08 57.6 11.6 114 41-159 3-139 (250)
170 PRK14982 acyl-ACP reductase; P 97.5 0.00064 1.4E-08 63.9 9.9 100 38-165 152-253 (340)
171 PRK06482 short chain dehydroge 97.5 0.0022 4.8E-08 57.5 13.2 112 42-158 3-134 (276)
172 PLN02996 fatty acyl-CoA reduct 97.5 0.0015 3.3E-08 64.4 12.9 121 37-158 7-161 (491)
173 PRK07326 short chain dehydroge 97.5 0.0013 2.9E-08 57.2 11.2 115 41-160 6-141 (237)
174 PRK12828 short chain dehydroge 97.5 0.0011 2.5E-08 57.3 10.7 36 40-77 6-41 (239)
175 PRK08655 prephenate dehydrogen 97.5 0.00092 2E-08 64.9 10.9 67 42-118 1-67 (437)
176 PRK05717 oxidoreductase; Valid 97.5 0.00096 2.1E-08 59.1 10.2 112 41-159 10-144 (255)
177 PRK07069 short chain dehydroge 97.5 0.0057 1.2E-07 53.6 15.1 114 43-159 1-138 (251)
178 PRK07634 pyrroline-5-carboxyla 97.5 0.0017 3.7E-08 57.6 11.6 70 40-117 3-74 (245)
179 PRK06182 short chain dehydroge 97.5 0.0014 3E-08 58.7 11.1 113 41-159 3-133 (273)
180 PRK08278 short chain dehydroge 97.5 0.0053 1.1E-07 55.2 14.9 159 40-214 5-192 (273)
181 PRK07523 gluconate 5-dehydroge 97.5 0.0031 6.7E-08 55.8 13.2 117 40-160 9-147 (255)
182 COG0300 DltE Short-chain dehyd 97.5 0.003 6.5E-08 57.3 13.1 118 38-159 3-143 (265)
183 PRK11559 garR tartronate semia 97.5 0.00091 2E-08 61.2 9.9 66 41-118 2-67 (296)
184 PRK07067 sorbitol dehydrogenas 97.4 0.0021 4.6E-08 56.8 12.0 112 41-159 6-140 (257)
185 PF04321 RmlD_sub_bind: RmlD s 97.4 0.00018 3.8E-09 65.8 5.1 97 42-157 1-99 (286)
186 PRK06180 short chain dehydroge 97.4 0.0045 9.6E-08 55.7 14.1 114 41-159 4-137 (277)
187 PRK05876 short chain dehydroge 97.4 0.0036 7.8E-08 56.5 13.4 115 41-159 6-143 (275)
188 PRK06172 short chain dehydroge 97.4 0.0038 8.3E-08 55.0 13.2 115 40-159 6-144 (253)
189 PRK07814 short chain dehydroge 97.4 0.0032 7E-08 56.1 12.7 116 40-159 9-147 (263)
190 PRK06924 short chain dehydroge 97.4 0.0028 6.1E-08 55.7 12.1 34 42-77 2-35 (251)
191 PRK08340 glucose-1-dehydrogena 97.4 0.0047 1E-07 54.8 13.6 113 42-159 1-138 (259)
192 TIGR01832 kduD 2-deoxy-D-gluco 97.4 0.0044 9.5E-08 54.4 13.2 116 40-159 4-140 (248)
193 COG2910 Putative NADH-flavin r 97.4 0.0015 3.3E-08 56.1 9.5 101 42-158 1-104 (211)
194 PRK07679 pyrroline-5-carboxyla 97.4 0.0015 3.3E-08 59.4 10.4 98 41-162 3-103 (279)
195 TIGR01505 tartro_sem_red 2-hyd 97.4 0.00093 2E-08 61.1 8.9 64 43-118 1-64 (291)
196 cd01065 NAD_bind_Shikimate_DH 97.4 0.0009 2E-08 54.9 8.0 84 29-120 7-92 (155)
197 PRK06545 prephenate dehydrogen 97.4 0.0016 3.5E-08 61.6 10.7 68 42-117 1-68 (359)
198 PRK08269 3-hydroxybutyryl-CoA 97.4 0.0015 3.3E-08 60.8 10.3 110 53-186 1-136 (314)
199 PRK06914 short chain dehydroge 97.4 0.0029 6.2E-08 56.8 11.9 34 42-77 4-37 (280)
200 COG1090 Predicted nucleoside-d 97.4 0.0017 3.6E-08 59.1 10.1 98 44-152 1-103 (297)
201 PRK12826 3-ketoacyl-(acyl-carr 97.4 0.0021 4.5E-08 56.2 10.7 114 40-158 5-141 (251)
202 TIGR00872 gnd_rel 6-phosphoglu 97.3 0.0019 4.1E-08 59.5 10.7 95 42-161 1-96 (298)
203 PRK08945 putative oxoacyl-(acy 97.3 0.0042 9.2E-08 54.6 12.6 117 39-159 10-152 (247)
204 TIGR02354 thiF_fam2 thiamine b 97.3 0.0025 5.3E-08 55.5 10.8 99 41-156 21-142 (200)
205 PRK12939 short chain dehydroge 97.3 0.0031 6.8E-08 55.1 11.7 116 40-159 6-143 (250)
206 PRK07774 short chain dehydroge 97.3 0.0049 1.1E-07 54.1 12.8 115 40-158 5-144 (250)
207 PRK05855 short chain dehydroge 97.3 0.0063 1.4E-07 59.9 14.9 117 39-159 313-452 (582)
208 PRK06928 pyrroline-5-carboxyla 97.3 0.0019 4.1E-08 58.9 10.4 100 41-163 1-103 (277)
209 PRK15461 NADH-dependent gamma- 97.3 0.0011 2.4E-08 60.9 8.9 64 42-117 2-65 (296)
210 PRK12491 pyrroline-5-carboxyla 97.3 0.0021 4.6E-08 58.5 10.7 67 42-117 3-71 (272)
211 PRK06181 short chain dehydroge 97.3 0.0058 1.3E-07 54.2 13.3 115 42-160 2-138 (263)
212 PRK12936 3-ketoacyl-(acyl-carr 97.3 0.0026 5.6E-08 55.5 10.8 114 40-160 5-140 (245)
213 PRK12823 benD 1,6-dihydroxycyc 97.3 0.0035 7.5E-08 55.5 11.8 36 40-77 7-42 (260)
214 PRK08507 prephenate dehydrogen 97.3 0.0019 4E-08 58.7 10.2 66 42-117 1-66 (275)
215 PRK07832 short chain dehydroge 97.3 0.016 3.5E-07 51.8 16.1 118 42-161 1-140 (272)
216 PRK07890 short chain dehydroge 97.3 0.0021 4.5E-08 56.7 10.1 117 39-159 3-141 (258)
217 PRK12937 short chain dehydroge 97.3 0.0048 1E-07 53.8 12.4 116 40-159 4-140 (245)
218 COG1088 RfbB dTDP-D-glucose 4, 97.3 0.0026 5.6E-08 58.5 10.6 117 42-158 1-126 (340)
219 PLN02260 probable rhamnose bio 97.3 0.0015 3.3E-08 66.5 10.3 90 40-151 379-475 (668)
220 PRK08213 gluconate 5-dehydroge 97.3 0.0049 1.1E-07 54.6 12.5 115 41-159 12-149 (259)
221 PRK12745 3-ketoacyl-(acyl-carr 97.3 0.014 3E-07 51.4 15.3 34 42-77 3-36 (256)
222 PRK12825 fabG 3-ketoacyl-(acyl 97.3 0.0025 5.3E-08 55.4 10.3 36 40-77 5-40 (249)
223 TIGR01963 PHB_DH 3-hydroxybuty 97.3 0.004 8.7E-08 54.6 11.7 34 42-77 2-35 (255)
224 PRK07024 short chain dehydroge 97.3 0.0018 3.9E-08 57.5 9.5 35 41-77 2-36 (257)
225 PRK05565 fabG 3-ketoacyl-(acyl 97.3 0.0037 8E-08 54.5 11.2 35 41-77 5-40 (247)
226 PRK12480 D-lactate dehydrogena 97.3 0.003 6.4E-08 59.2 11.1 63 40-118 145-207 (330)
227 PRK05993 short chain dehydroge 97.3 0.0022 4.9E-08 57.7 10.0 112 42-159 5-135 (277)
228 PRK07454 short chain dehydroge 97.3 0.0029 6.3E-08 55.4 10.4 115 40-159 5-142 (241)
229 PRK09291 short chain dehydroge 97.3 0.005 1.1E-07 54.2 12.1 113 42-159 3-132 (257)
230 PRK08263 short chain dehydroge 97.3 0.0016 3.4E-08 58.5 9.0 111 42-158 4-135 (275)
231 PRK06197 short chain dehydroge 97.3 0.0051 1.1E-07 56.2 12.5 116 40-158 15-151 (306)
232 PRK12367 short chain dehydroge 97.3 0.006 1.3E-07 54.4 12.6 102 42-147 15-124 (245)
233 PRK05653 fabG 3-ketoacyl-(acyl 97.3 0.0027 5.8E-08 55.2 10.1 35 41-77 5-39 (246)
234 PRK10538 malonic semialdehyde 97.2 0.0023 4.9E-08 56.5 9.8 34 42-77 1-34 (248)
235 PRK05650 short chain dehydroge 97.2 0.0037 8.1E-08 55.8 11.3 113 42-159 1-136 (270)
236 PRK12827 short chain dehydroge 97.2 0.0041 9E-08 54.2 11.3 103 40-146 5-130 (249)
237 PTZ00142 6-phosphogluconate de 97.2 0.0023 5.1E-08 62.7 10.6 97 42-161 2-104 (470)
238 PF01488 Shikimate_DH: Shikima 97.2 0.0013 2.8E-08 53.5 7.5 78 38-120 9-86 (135)
239 PRK05875 short chain dehydroge 97.2 0.0056 1.2E-07 54.7 12.3 117 41-159 7-146 (276)
240 PRK06179 short chain dehydroge 97.2 0.0034 7.3E-08 56.0 10.8 35 41-77 4-38 (270)
241 PRK06138 short chain dehydroge 97.2 0.0052 1.1E-07 53.9 11.8 36 40-77 4-39 (252)
242 PRK07666 fabG 3-ketoacyl-(acyl 97.2 0.0044 9.5E-08 54.1 11.3 116 41-160 7-144 (239)
243 COG0287 TyrA Prephenate dehydr 97.2 0.0041 8.9E-08 57.0 11.3 65 41-118 3-73 (279)
244 PRK08265 short chain dehydroge 97.2 0.0056 1.2E-07 54.5 12.0 36 40-77 5-40 (261)
245 PRK07478 short chain dehydroge 97.2 0.0064 1.4E-07 53.7 12.2 114 41-159 6-143 (254)
246 COG2084 MmsB 3-hydroxyisobutyr 97.2 0.0022 4.8E-08 58.8 9.4 66 42-118 1-66 (286)
247 PRK13243 glyoxylate reductase; 97.2 0.002 4.3E-08 60.4 9.3 93 39-158 148-240 (333)
248 PRK07576 short chain dehydroge 97.2 0.0066 1.4E-07 54.3 12.3 118 40-161 8-146 (264)
249 PRK12481 2-deoxy-D-gluconate 3 97.2 0.0071 1.5E-07 53.6 12.4 115 41-159 8-143 (251)
250 PRK06841 short chain dehydroge 97.2 0.0032 6.9E-08 55.5 10.1 114 40-159 14-148 (255)
251 TIGR01830 3oxo_ACP_reduc 3-oxo 97.2 0.0052 1.1E-07 53.3 11.3 113 44-160 1-136 (239)
252 KOG2666 UDP-glucose/GDP-mannos 97.2 0.0016 3.4E-08 60.3 8.0 79 41-123 1-92 (481)
253 PLN02256 arogenate dehydrogena 97.2 0.0041 8.8E-08 57.7 10.8 65 40-117 35-100 (304)
254 PRK12490 6-phosphogluconate de 97.2 0.0031 6.7E-08 58.1 10.0 64 42-117 1-67 (299)
255 PRK09186 flagellin modificatio 97.2 0.0066 1.4E-07 53.4 11.8 36 40-77 3-38 (256)
256 PRK08219 short chain dehydroge 97.2 0.0034 7.4E-08 54.0 9.8 75 41-120 3-82 (227)
257 PRK08251 short chain dehydroge 97.2 0.0093 2E-07 52.3 12.7 78 42-121 3-93 (248)
258 PF02558 ApbA: Ketopantoate re 97.1 0.0018 4E-08 52.9 7.6 116 44-186 1-122 (151)
259 PRK06701 short chain dehydroge 97.1 0.0049 1.1E-07 56.1 11.1 118 38-159 43-182 (290)
260 PRK07856 short chain dehydroge 97.1 0.0074 1.6E-07 53.3 11.9 110 40-159 5-135 (252)
261 PRK06057 short chain dehydroge 97.1 0.0026 5.7E-08 56.3 9.0 36 40-77 6-41 (255)
262 PRK07453 protochlorophyllide o 97.1 0.0045 9.7E-08 57.0 10.8 115 40-158 5-144 (322)
263 PRK15469 ghrA bifunctional gly 97.1 0.0055 1.2E-07 57.0 11.4 92 40-158 135-226 (312)
264 PRK06935 2-deoxy-D-gluconate 3 97.1 0.0095 2.1E-07 52.8 12.5 35 41-77 15-49 (258)
265 PRK08993 2-deoxy-D-gluconate 3 97.1 0.0075 1.6E-07 53.4 11.8 115 41-159 10-145 (253)
266 TIGR03649 ergot_EASG ergot alk 97.1 0.0027 5.9E-08 57.3 8.9 33 43-77 1-33 (285)
267 PRK12746 short chain dehydroge 97.1 0.0092 2E-07 52.5 12.1 115 41-159 6-147 (254)
268 PRK05854 short chain dehydroge 97.1 0.0086 1.9E-07 55.2 12.4 115 40-158 13-149 (313)
269 PRK08589 short chain dehydroge 97.1 0.014 3E-07 52.4 13.4 115 40-160 5-142 (272)
270 PRK08085 gluconate 5-dehydroge 97.1 0.0046 1E-07 54.6 10.1 35 41-77 9-43 (254)
271 PRK06198 short chain dehydroge 97.1 0.0077 1.7E-07 53.2 11.6 116 40-159 5-144 (260)
272 PLN00016 RNA-binding protein; 97.1 0.0048 1E-07 58.4 10.8 36 40-77 51-90 (378)
273 PRK06500 short chain dehydroge 97.1 0.0073 1.6E-07 52.8 11.3 100 41-147 6-124 (249)
274 PRK08818 prephenate dehydrogen 97.1 0.0048 1E-07 58.7 10.6 57 41-118 4-60 (370)
275 PRK12935 acetoacetyl-CoA reduc 97.1 0.0076 1.7E-07 52.8 11.3 115 41-159 6-143 (247)
276 PRK06124 gluconate 5-dehydroge 97.1 0.0036 7.8E-08 55.3 9.2 117 40-161 10-149 (256)
277 PRK07904 short chain dehydroge 97.1 0.0089 1.9E-07 53.2 11.8 115 40-158 7-145 (253)
278 PRK06196 oxidoreductase; Provi 97.1 0.0063 1.4E-07 56.0 11.0 110 41-158 26-155 (315)
279 PRK07074 short chain dehydroge 97.1 0.0052 1.1E-07 54.3 10.2 34 42-77 3-36 (257)
280 cd05312 NAD_bind_1_malic_enz N 97.0 0.0012 2.5E-08 60.4 5.9 106 40-162 24-144 (279)
281 COG1893 ApbA Ketopantoate redu 97.0 0.0045 9.8E-08 57.4 9.9 120 42-189 1-126 (307)
282 PRK06128 oxidoreductase; Provi 97.0 0.0092 2E-07 54.5 11.9 115 41-159 55-192 (300)
283 PRK05867 short chain dehydroge 97.0 0.0076 1.7E-07 53.2 11.0 114 41-158 9-145 (253)
284 TIGR02632 RhaD_aldol-ADH rhamn 97.0 0.0091 2E-07 61.2 12.9 116 41-158 414-552 (676)
285 PRK08264 short chain dehydroge 97.0 0.011 2.4E-07 51.4 11.9 113 41-161 6-135 (238)
286 cd01078 NAD_bind_H4MPT_DH NADP 97.0 0.0025 5.4E-08 54.7 7.6 77 39-118 26-106 (194)
287 COG0345 ProC Pyrroline-5-carbo 97.0 0.0048 1E-07 56.1 9.7 97 41-162 1-99 (266)
288 PRK06101 short chain dehydroge 97.0 0.016 3.4E-07 50.9 12.9 114 42-159 2-128 (240)
289 TIGR02415 23BDH acetoin reduct 97.0 0.0043 9.2E-08 54.6 9.2 112 43-158 2-136 (254)
290 COG0569 TrkA K+ transport syst 97.0 0.0037 8.1E-08 55.4 8.8 71 42-118 1-75 (225)
291 COG1091 RfbD dTDP-4-dehydrorha 97.0 0.0037 8.1E-08 57.2 8.9 201 42-277 1-227 (281)
292 PTZ00431 pyrroline carboxylate 97.0 0.0053 1.2E-07 55.4 9.9 90 41-162 3-94 (260)
293 PRK09599 6-phosphogluconate de 97.0 0.0055 1.2E-07 56.4 10.1 64 42-117 1-67 (301)
294 PLN02712 arogenate dehydrogena 97.0 0.0053 1.1E-07 62.8 10.8 84 21-117 23-116 (667)
295 PF05368 NmrA: NmrA-like famil 97.0 0.0025 5.4E-08 55.9 7.5 95 44-151 1-96 (233)
296 cd05213 NAD_bind_Glutamyl_tRNA 97.0 0.0055 1.2E-07 56.8 10.1 101 39-165 176-280 (311)
297 PRK07063 short chain dehydroge 97.0 0.02 4.3E-07 50.7 13.4 117 40-159 6-145 (260)
298 PRK08226 short chain dehydroge 97.0 0.0067 1.5E-07 53.8 10.3 36 40-77 5-40 (263)
299 PLN02780 ketoreductase/ oxidor 97.0 0.01 2.2E-07 55.1 11.9 116 41-159 53-193 (320)
300 PRK06476 pyrroline-5-carboxyla 97.0 0.004 8.8E-08 55.9 8.9 68 42-117 1-69 (258)
301 PF03949 Malic_M: Malic enzyme 97.0 0.0031 6.6E-08 56.9 8.0 108 40-166 24-151 (255)
302 PRK06398 aldose dehydrogenase; 97.0 0.0065 1.4E-07 54.1 10.1 112 40-159 5-131 (258)
303 PRK07109 short chain dehydroge 97.0 0.019 4E-07 53.6 13.5 115 40-159 7-144 (334)
304 PRK12743 oxidoreductase; Provi 97.0 0.044 9.5E-07 48.5 15.4 115 41-159 2-140 (256)
305 PRK06523 short chain dehydroge 97.0 0.0022 4.7E-08 56.8 6.9 35 41-77 9-43 (260)
306 PRK07060 short chain dehydroge 97.0 0.0047 1E-07 53.9 9.0 116 40-159 8-137 (245)
307 PRK07577 short chain dehydroge 97.0 0.0065 1.4E-07 52.7 9.8 35 41-77 3-37 (234)
308 cd05311 NAD_bind_2_malic_enz N 97.0 0.0061 1.3E-07 54.1 9.7 99 39-162 23-132 (226)
309 cd00762 NAD_bind_malic_enz NAD 97.0 0.0013 2.8E-08 59.2 5.4 125 40-187 24-167 (254)
310 PRK06463 fabG 3-ketoacyl-(acyl 97.0 0.0096 2.1E-07 52.7 11.0 115 40-159 6-138 (255)
311 PRK06949 short chain dehydroge 96.9 0.012 2.6E-07 51.8 11.5 37 39-77 7-43 (258)
312 PRK07677 short chain dehydroge 96.9 0.0098 2.1E-07 52.5 10.8 113 42-158 2-137 (252)
313 PRK06171 sorbitol-6-phosphate 96.9 0.0058 1.3E-07 54.3 9.4 35 41-77 9-43 (266)
314 PRK07097 gluconate 5-dehydroge 96.9 0.019 4.1E-07 51.1 12.7 116 41-161 10-148 (265)
315 PRK08306 dipicolinate synthase 96.9 0.0053 1.1E-07 56.6 9.3 78 29-117 140-218 (296)
316 PLN02503 fatty acyl-CoA reduct 96.9 0.011 2.3E-07 59.8 12.1 119 39-158 117-268 (605)
317 PRK07574 formate dehydrogenase 96.9 0.0072 1.6E-07 57.8 10.4 95 39-158 190-284 (385)
318 PRK08936 glucose-1-dehydrogena 96.9 0.012 2.6E-07 52.2 11.3 117 39-159 5-145 (261)
319 PRK05557 fabG 3-ketoacyl-(acyl 96.9 0.0087 1.9E-07 52.0 10.2 116 40-159 4-142 (248)
320 PRK07062 short chain dehydroge 96.9 0.027 5.9E-07 50.0 13.6 117 40-159 7-146 (265)
321 PRK08628 short chain dehydroge 96.9 0.014 3E-07 51.6 11.6 103 40-146 6-125 (258)
322 TIGR03325 BphB_TodD cis-2,3-di 96.9 0.012 2.6E-07 52.3 11.3 36 40-77 4-39 (262)
323 PRK06113 7-alpha-hydroxysteroi 96.9 0.012 2.6E-07 52.0 11.2 115 41-159 11-146 (255)
324 PRK08605 D-lactate dehydrogena 96.9 0.0043 9.3E-08 58.1 8.5 64 40-118 145-209 (332)
325 PRK05479 ketol-acid reductoiso 96.9 0.0089 1.9E-07 56.0 10.5 67 39-117 15-81 (330)
326 PRK05693 short chain dehydroge 96.9 0.01 2.2E-07 53.1 10.6 34 42-77 2-35 (274)
327 PF07993 NAD_binding_4: Male s 96.9 0.0032 7E-08 56.1 7.2 112 46-158 1-135 (249)
328 PRK09242 tropinone reductase; 96.9 0.025 5.3E-07 50.0 12.9 116 41-159 9-147 (257)
329 PRK12742 oxidoreductase; Provi 96.9 0.016 3.6E-07 50.3 11.6 34 41-76 6-39 (237)
330 PF02826 2-Hacid_dh_C: D-isome 96.9 0.0077 1.7E-07 51.2 9.2 94 39-159 34-128 (178)
331 PRK09072 short chain dehydroge 96.9 0.013 2.7E-07 52.1 11.0 115 40-159 4-139 (263)
332 PRK07035 short chain dehydroge 96.9 0.0094 2E-07 52.5 10.1 35 41-77 8-42 (252)
333 PRK05708 2-dehydropantoate 2-r 96.9 0.017 3.6E-07 53.4 12.1 117 41-186 2-125 (305)
334 PF01113 DapB_N: Dihydrodipico 96.9 0.012 2.5E-07 47.2 9.7 73 42-117 1-75 (124)
335 PRK06550 fabG 3-ketoacyl-(acyl 96.9 0.017 3.7E-07 50.2 11.6 107 40-158 4-126 (235)
336 PRK08339 short chain dehydroge 96.9 0.034 7.4E-07 49.7 13.7 116 41-160 8-145 (263)
337 PRK08862 short chain dehydroge 96.8 0.21 4.6E-06 43.8 18.5 116 40-159 4-144 (227)
338 PRK08277 D-mannonate oxidoredu 96.8 0.039 8.4E-07 49.4 14.1 35 41-77 10-44 (278)
339 PRK15059 tartronate semialdehy 96.8 0.0057 1.2E-07 56.3 8.7 64 42-118 1-64 (292)
340 COG4221 Short-chain alcohol de 96.8 0.056 1.2E-06 48.4 14.5 129 42-188 7-157 (246)
341 PRK09134 short chain dehydroge 96.8 0.0085 1.8E-07 53.1 9.5 113 41-157 9-144 (258)
342 PRK06139 short chain dehydroge 96.8 0.013 2.9E-07 54.6 11.2 114 40-158 6-142 (330)
343 PLN03139 formate dehydrogenase 96.8 0.0099 2.1E-07 56.9 10.4 95 39-158 197-291 (386)
344 PRK09009 C factor cell-cell si 96.8 0.017 3.6E-07 50.3 11.1 71 42-120 1-78 (235)
345 COG0136 Asd Aspartate-semialde 96.8 0.0068 1.5E-07 56.6 8.8 73 41-118 1-75 (334)
346 TIGR01745 asd_gamma aspartate- 96.8 0.0063 1.4E-07 57.7 8.7 71 42-118 1-73 (366)
347 PRK14806 bifunctional cyclohex 96.8 0.012 2.6E-07 60.6 11.5 91 42-157 4-96 (735)
348 PRK06114 short chain dehydroge 96.8 0.014 3.1E-07 51.6 10.6 35 41-77 8-42 (254)
349 KOG2305 3-hydroxyacyl-CoA dehy 96.8 0.0037 8.1E-08 55.4 6.6 109 41-168 3-128 (313)
350 PRK07831 short chain dehydroge 96.8 0.11 2.4E-06 46.0 16.3 35 41-77 17-52 (262)
351 COG1712 Predicted dinucleotide 96.8 0.012 2.7E-07 52.0 9.7 96 42-162 1-97 (255)
352 TIGR00873 gnd 6-phosphoglucona 96.8 0.0082 1.8E-07 58.9 9.7 97 43-159 1-99 (467)
353 PRK07825 short chain dehydroge 96.8 0.039 8.4E-07 49.3 13.4 111 41-159 5-137 (273)
354 PRK08324 short chain dehydroge 96.8 0.013 2.7E-07 60.1 11.4 113 41-158 422-557 (681)
355 cd01487 E1_ThiF_like E1_ThiF_l 96.8 0.018 3.9E-07 48.9 10.6 33 43-77 1-33 (174)
356 PRK12747 short chain dehydroge 96.8 0.061 1.3E-06 47.3 14.4 34 40-75 3-36 (252)
357 PRK07023 short chain dehydroge 96.8 0.0037 8.1E-08 54.8 6.6 35 41-77 1-35 (243)
358 PRK05884 short chain dehydroge 96.8 0.0075 1.6E-07 52.7 8.5 34 42-77 1-34 (223)
359 PRK08063 enoyl-(acyl carrier p 96.7 0.023 4.9E-07 49.8 11.6 35 41-77 4-39 (250)
360 PLN02928 oxidoreductase family 96.7 0.0072 1.6E-07 57.0 8.8 104 39-158 157-262 (347)
361 KOG1371 UDP-glucose 4-epimeras 96.7 0.014 3E-07 54.3 10.3 105 41-149 2-119 (343)
362 PRK06598 aspartate-semialdehyd 96.7 0.0084 1.8E-07 57.0 9.1 72 41-118 1-74 (369)
363 PRK08642 fabG 3-ketoacyl-(acyl 96.7 0.034 7.4E-07 48.7 12.4 34 41-76 5-38 (253)
364 PRK06953 short chain dehydroge 96.7 0.027 5.9E-07 48.7 11.6 113 42-159 2-130 (222)
365 PRK12824 acetoacetyl-CoA reduc 96.7 0.032 6.8E-07 48.6 12.0 34 42-77 3-36 (245)
366 PRK12744 short chain dehydroge 96.7 0.045 9.8E-07 48.4 13.2 34 41-76 8-41 (257)
367 PRK05872 short chain dehydroge 96.7 0.016 3.4E-07 52.9 10.4 115 40-159 8-143 (296)
368 PRK07775 short chain dehydroge 96.7 0.02 4.3E-07 51.4 10.9 34 42-77 11-44 (274)
369 KOG1205 Predicted dehydrogenas 96.7 0.023 4.9E-07 52.1 11.2 121 41-165 12-156 (282)
370 PRK13304 L-aspartate dehydroge 96.7 0.012 2.7E-07 53.3 9.5 69 41-118 1-70 (265)
371 PRK08217 fabG 3-ketoacyl-(acyl 96.7 0.016 3.5E-07 50.6 9.9 36 40-77 4-39 (253)
372 PRK07201 short chain dehydroge 96.6 0.028 6E-07 56.8 12.9 115 39-158 369-508 (657)
373 PRK08703 short chain dehydroge 96.6 0.047 1E-06 47.6 12.8 36 40-77 5-40 (239)
374 PRK06947 glucose-1-dehydrogena 96.6 0.021 4.4E-07 50.1 10.5 33 41-75 2-34 (248)
375 PRK06077 fabG 3-ketoacyl-(acyl 96.6 0.027 5.9E-07 49.3 11.3 33 41-75 6-38 (252)
376 TIGR01850 argC N-acetyl-gamma- 96.6 0.014 3.1E-07 54.9 9.9 74 42-118 1-77 (346)
377 TIGR02356 adenyl_thiF thiazole 96.6 0.0087 1.9E-07 52.1 7.8 35 41-77 21-55 (202)
378 PLN02712 arogenate dehydrogena 96.6 0.017 3.6E-07 59.1 11.0 66 39-117 367-433 (667)
379 PRK05786 fabG 3-ketoacyl-(acyl 96.6 0.017 3.8E-07 50.1 9.8 35 41-77 5-39 (238)
380 PRK08644 thiamine biosynthesis 96.6 0.023 5.1E-07 49.8 10.5 34 42-77 29-62 (212)
381 PLN02350 phosphogluconate dehy 96.6 0.015 3.2E-07 57.4 10.1 97 40-160 5-109 (493)
382 cd00401 AdoHcyase S-adenosyl-L 96.6 0.02 4.2E-07 55.3 10.7 91 39-160 200-291 (413)
383 PRK08416 7-alpha-hydroxysteroi 96.6 0.15 3.3E-06 45.2 15.9 35 39-75 6-40 (260)
384 PRK12938 acetyacetyl-CoA reduc 96.6 0.028 6.2E-07 49.1 11.0 31 42-74 4-34 (246)
385 TIGR02853 spore_dpaA dipicolin 96.6 0.011 2.4E-07 54.3 8.6 97 39-163 149-246 (287)
386 PRK06123 short chain dehydroge 96.6 0.038 8.3E-07 48.3 11.7 34 42-77 3-36 (248)
387 TIGR00518 alaDH alanine dehydr 96.5 0.01 2.3E-07 56.4 8.5 82 33-120 159-241 (370)
388 PRK08220 2,3-dihydroxybenzoate 96.5 0.02 4.4E-07 50.2 9.8 35 41-77 8-42 (252)
389 PRK13302 putative L-aspartate 96.5 0.0085 1.8E-07 54.6 7.5 70 39-118 4-76 (271)
390 PRK06940 short chain dehydroge 96.5 0.024 5.3E-07 51.1 10.4 110 43-159 4-126 (275)
391 PLN02968 Probable N-acetyl-gam 96.5 0.0079 1.7E-07 57.5 7.4 77 39-118 36-113 (381)
392 TIGR00465 ilvC ketol-acid redu 96.5 0.025 5.5E-07 52.6 10.5 66 40-117 2-67 (314)
393 PRK08177 short chain dehydroge 96.5 0.016 3.4E-07 50.3 8.7 34 42-77 2-35 (225)
394 PF03435 Saccharop_dh: Sacchar 96.5 0.0027 5.8E-08 60.3 4.1 71 44-119 1-77 (386)
395 TIGR01327 PGDH D-3-phosphoglyc 96.5 0.012 2.7E-07 58.4 8.7 66 40-118 137-202 (525)
396 PRK07578 short chain dehydroge 96.5 0.037 8.1E-07 47.0 10.6 104 42-158 1-111 (199)
397 PRK07985 oxidoreductase; Provi 96.4 0.065 1.4E-06 48.8 12.8 118 39-159 47-186 (294)
398 PRK00048 dihydrodipicolinate r 96.4 0.17 3.7E-06 45.6 15.3 68 41-117 1-68 (257)
399 TIGR01831 fabG_rel 3-oxoacyl-( 96.4 0.037 7.9E-07 48.2 10.7 114 44-161 1-138 (239)
400 PRK14106 murD UDP-N-acetylmura 96.4 0.026 5.7E-07 54.5 10.6 124 40-174 4-132 (450)
401 KOG1201 Hydroxysteroid 17-beta 96.4 0.057 1.2E-06 49.7 12.0 117 39-161 36-175 (300)
402 PLN02494 adenosylhomocysteinas 96.4 0.023 5E-07 55.6 10.0 94 39-163 252-346 (477)
403 PRK14874 aspartate-semialdehyd 96.4 0.012 2.7E-07 55.1 7.9 71 41-118 1-72 (334)
404 PRK13581 D-3-phosphoglycerate 96.4 0.013 2.8E-07 58.3 8.4 92 40-158 139-230 (526)
405 PRK12475 thiamine/molybdopteri 96.4 0.015 3.3E-07 54.6 8.3 75 41-117 24-124 (338)
406 PRK07792 fabG 3-ketoacyl-(acyl 96.4 0.037 8.1E-07 50.7 10.7 80 39-122 10-102 (306)
407 cd01483 E1_enzyme_family Super 96.4 0.04 8.6E-07 44.8 9.8 33 43-77 1-33 (143)
408 TIGR02685 pter_reduc_Leis pter 96.4 0.14 3E-06 45.6 14.2 32 43-76 3-34 (267)
409 TIGR01829 AcAcCoA_reduct aceto 96.3 0.065 1.4E-06 46.5 11.7 31 43-75 2-32 (242)
410 cd01079 NAD_bind_m-THF_DH NAD 96.3 0.016 3.4E-07 50.3 7.5 76 39-120 60-137 (197)
411 TIGR01692 HIBADH 3-hydroxyisob 96.3 0.018 3.9E-07 52.6 8.4 61 46-118 1-61 (288)
412 PRK06200 2,3-dihydroxy-2,3-dih 96.3 0.028 6E-07 49.9 9.4 36 40-77 5-40 (263)
413 PRK06718 precorrin-2 dehydroge 96.3 0.037 8E-07 48.2 9.9 71 40-118 9-79 (202)
414 PRK08261 fabG 3-ketoacyl-(acyl 96.3 0.044 9.6E-07 52.9 11.5 118 40-159 209-343 (450)
415 PF02882 THF_DHG_CYH_C: Tetrah 96.3 0.023 5E-07 47.8 8.1 57 39-120 34-90 (160)
416 PRK05671 aspartate-semialdehyd 96.3 0.013 2.9E-07 55.0 7.4 72 40-118 3-75 (336)
417 PRK15438 erythronate-4-phospha 96.3 0.021 4.5E-07 54.6 8.7 63 39-118 114-176 (378)
418 TIGR01035 hemA glutamyl-tRNA r 96.3 0.016 3.5E-07 55.9 8.1 105 38-165 177-284 (417)
419 PRK07688 thiamine/molybdopteri 96.3 0.033 7.2E-07 52.4 10.0 35 41-77 24-58 (339)
420 PRK05599 hypothetical protein; 96.3 0.32 7E-06 42.9 15.9 116 42-161 1-139 (246)
421 PRK06125 short chain dehydroge 96.2 0.16 3.4E-06 44.9 13.8 115 41-159 7-140 (259)
422 PRK08017 oxidoreductase; Provi 96.2 0.019 4.1E-07 50.5 7.9 34 42-77 3-36 (256)
423 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.02 4.3E-07 48.6 7.5 58 37-120 40-98 (168)
424 PLN02383 aspartate semialdehyd 96.2 0.014 3E-07 55.0 7.3 71 41-118 7-78 (344)
425 PRK06483 dihydromonapterin red 96.2 0.066 1.4E-06 46.6 11.2 35 41-77 2-36 (236)
426 TIGR02371 ala_DH_arch alanine 96.2 0.018 3.9E-07 53.8 8.0 71 41-117 128-200 (325)
427 PRK15409 bifunctional glyoxyla 96.2 0.025 5.5E-07 52.8 8.9 93 39-158 143-236 (323)
428 PTZ00075 Adenosylhomocysteinas 96.2 0.031 6.7E-07 54.8 9.6 91 39-160 252-343 (476)
429 PRK14194 bifunctional 5,10-met 96.2 0.019 4.1E-07 53.1 7.7 57 39-120 157-213 (301)
430 PRK00257 erythronate-4-phospha 96.2 0.023 4.9E-07 54.4 8.4 63 39-118 114-176 (381)
431 PRK08291 ectoine utilization p 96.1 0.027 5.9E-07 52.6 8.8 73 41-118 132-206 (330)
432 PRK06728 aspartate-semialdehyd 96.1 0.015 3.3E-07 54.8 7.0 72 40-118 4-77 (347)
433 TIGR01724 hmd_rel H2-forming N 96.1 0.097 2.1E-06 48.9 12.1 56 53-117 31-89 (341)
434 cd01075 NAD_bind_Leu_Phe_Val_D 96.1 0.016 3.6E-07 50.3 6.8 39 36-77 23-61 (200)
435 PRK01438 murD UDP-N-acetylmura 96.1 0.069 1.5E-06 52.2 11.9 124 41-174 16-146 (480)
436 PRK08618 ornithine cyclodeamin 96.1 0.021 4.6E-07 53.2 7.9 73 41-118 127-201 (325)
437 COG2344 AT-rich DNA-binding pr 96.1 0.019 4.1E-07 49.4 6.8 111 27-165 70-184 (211)
438 TIGR00936 ahcY adenosylhomocys 96.1 0.036 7.8E-07 53.4 9.5 66 39-118 193-259 (406)
439 PRK05476 S-adenosyl-L-homocyst 96.1 0.053 1.2E-06 52.5 10.7 92 39-161 210-302 (425)
440 PRK06484 short chain dehydroge 96.1 0.056 1.2E-06 53.1 11.1 115 41-159 5-141 (520)
441 PRK09424 pntA NAD(P) transhydr 96.1 0.038 8.3E-07 54.7 9.8 125 13-160 143-287 (509)
442 PRK07984 enoyl-(acyl carrier p 96.1 0.16 3.4E-06 45.6 13.1 36 40-77 5-42 (262)
443 cd00757 ThiF_MoeB_HesA_family 96.1 0.024 5.2E-07 50.1 7.7 35 41-77 21-55 (228)
444 PRK06436 glycerate dehydrogena 96.1 0.029 6.3E-07 52.0 8.4 96 39-164 120-217 (303)
445 PF02423 OCD_Mu_crystall: Orni 96.1 0.018 3.9E-07 53.5 7.1 69 42-117 129-200 (313)
446 PRK06407 ornithine cyclodeamin 96.1 0.024 5.2E-07 52.4 7.8 72 41-117 117-190 (301)
447 COG1064 AdhP Zn-dependent alco 96.0 0.2 4.2E-06 47.2 13.5 129 39-198 165-299 (339)
448 TIGR01289 LPOR light-dependent 96.0 0.091 2E-06 48.4 11.4 114 41-158 3-142 (314)
449 PRK00421 murC UDP-N-acetylmura 96.0 0.081 1.8E-06 51.5 11.5 128 38-178 4-134 (461)
450 TIGR01470 cysG_Nterm siroheme 96.0 0.054 1.2E-06 47.3 9.3 70 41-118 9-78 (205)
451 PRK00436 argC N-acetyl-gamma-g 96.0 0.022 4.8E-07 53.6 7.3 35 41-75 2-36 (343)
452 PRK00045 hemA glutamyl-tRNA re 96.0 0.033 7.3E-07 53.8 8.7 104 39-165 180-287 (423)
453 PRK07340 ornithine cyclodeamin 96.0 0.031 6.7E-07 51.7 8.1 71 41-118 125-197 (304)
454 PRK06719 precorrin-2 dehydroge 96.0 0.11 2.3E-06 43.5 10.6 67 40-117 12-78 (157)
455 PRK01710 murD UDP-N-acetylmura 95.9 0.063 1.4E-06 52.3 10.6 122 42-174 15-141 (458)
456 PRK07041 short chain dehydroge 95.9 0.048 1E-06 47.1 8.8 107 46-158 2-123 (230)
457 COG0002 ArgC Acetylglutamate s 95.9 0.018 3.9E-07 54.0 6.3 74 41-117 2-78 (349)
458 PRK08040 putative semialdehyde 95.9 0.022 4.8E-07 53.5 7.0 72 40-118 3-75 (336)
459 PLN03129 NADP-dependent malic 95.9 0.017 3.7E-07 57.6 6.5 103 41-161 321-439 (581)
460 PRK09730 putative NAD(P)-bindi 95.9 0.069 1.5E-06 46.4 9.8 33 42-76 2-35 (247)
461 COG0111 SerA Phosphoglycerate 95.9 0.033 7.1E-07 52.1 8.0 65 41-118 142-206 (324)
462 COG1052 LdhA Lactate dehydroge 95.9 0.055 1.2E-06 50.7 9.4 93 39-158 144-236 (324)
463 COG0289 DapB Dihydrodipicolina 95.9 0.084 1.8E-06 47.8 10.1 76 40-116 1-76 (266)
464 TIGR02992 ectoine_eutC ectoine 95.9 0.035 7.7E-07 51.8 8.1 73 41-118 129-203 (326)
465 cd05212 NAD_bind_m-THF_DH_Cycl 95.8 0.045 9.7E-07 45.0 7.7 57 39-120 26-82 (140)
466 PRK05600 thiamine biosynthesis 95.8 0.046 9.9E-07 52.1 8.8 35 41-77 41-75 (370)
467 PLN02306 hydroxypyruvate reduc 95.8 0.063 1.4E-06 51.5 9.7 103 39-158 163-272 (386)
468 PF01262 AlaDh_PNT_C: Alanine 95.8 0.0037 8.1E-08 52.6 1.2 45 30-77 9-53 (168)
469 PRK03659 glutathione-regulated 95.8 0.075 1.6E-06 53.8 10.7 138 41-210 400-542 (601)
470 PRK06141 ornithine cyclodeamin 95.8 0.042 9.1E-07 51.0 8.3 71 40-117 124-197 (314)
471 PRK13529 malate dehydrogenase; 95.8 0.025 5.4E-07 56.3 7.0 106 41-162 295-421 (563)
472 PRK06484 short chain dehydroge 95.8 0.096 2.1E-06 51.4 11.2 117 41-161 269-403 (520)
473 PF07991 IlvN: Acetohydroxy ac 95.8 0.16 3.5E-06 42.8 10.8 66 40-117 3-68 (165)
474 PRK05690 molybdopterin biosynt 95.7 0.042 9.1E-07 49.3 7.8 34 42-77 33-66 (245)
475 PRK06079 enoyl-(acyl carrier p 95.7 0.052 1.1E-06 48.1 8.3 37 39-77 5-43 (252)
476 TIGR01809 Shik-DH-AROM shikima 95.7 0.044 9.5E-07 50.1 8.0 94 21-119 103-200 (282)
477 TIGR02355 moeB molybdopterin s 95.7 0.046 1E-06 48.9 7.9 34 42-77 25-58 (240)
478 PRK03562 glutathione-regulated 95.7 0.083 1.8E-06 53.7 10.5 138 41-210 400-542 (621)
479 PRK08223 hypothetical protein; 95.7 0.052 1.1E-06 49.9 8.3 34 42-77 28-61 (287)
480 cd01485 E1-1_like Ubiquitin ac 95.7 0.05 1.1E-06 47.2 7.8 34 42-77 20-53 (198)
481 PRK09496 trkA potassium transp 95.7 0.072 1.6E-06 51.4 9.6 71 42-117 1-73 (453)
482 PRK14027 quinate/shikimate deh 95.7 0.067 1.4E-06 49.1 8.9 89 27-118 113-203 (283)
483 PRK07589 ornithine cyclodeamin 95.6 0.044 9.5E-07 51.7 7.8 71 41-117 129-201 (346)
484 PRK14192 bifunctional 5,10-met 95.6 0.053 1.2E-06 49.8 8.1 77 18-120 137-213 (283)
485 PRK12749 quinate/shikimate deh 95.6 0.072 1.6E-06 49.0 9.0 95 22-118 105-205 (288)
486 TIGR00507 aroE shikimate 5-deh 95.6 0.059 1.3E-06 48.8 8.3 84 28-120 104-189 (270)
487 COG0702 Predicted nucleoside-d 95.6 0.034 7.3E-07 49.2 6.6 72 42-120 1-74 (275)
488 PRK14175 bifunctional 5,10-met 95.6 0.048 1E-06 50.1 7.6 57 39-120 156-212 (286)
489 PRK08762 molybdopterin biosynt 95.6 0.076 1.7E-06 50.5 9.3 33 42-76 136-168 (376)
490 PF00670 AdoHcyase_NAD: S-aden 95.6 0.038 8.3E-07 46.6 6.3 67 40-119 22-88 (162)
491 PRK14179 bifunctional 5,10-met 95.5 0.047 1E-06 50.1 7.3 57 39-120 156-212 (284)
492 PF00106 adh_short: short chai 95.5 0.18 4E-06 41.1 10.4 115 43-161 2-137 (167)
493 PRK06823 ornithine cyclodeamin 95.5 0.061 1.3E-06 50.1 8.2 71 41-117 128-200 (315)
494 KOG1208 Dehydrogenases with di 95.5 0.36 7.8E-06 45.0 13.3 160 34-203 28-216 (314)
495 smart00859 Semialdhyde_dh Semi 95.5 0.16 3.5E-06 40.0 9.6 72 43-118 1-74 (122)
496 PRK08664 aspartate-semialdehyd 95.5 0.051 1.1E-06 51.2 7.7 36 40-76 2-37 (349)
497 TIGR03443 alpha_am_amid L-amin 95.5 0.17 3.6E-06 55.7 12.7 117 41-158 971-1109(1389)
498 PRK13403 ketol-acid reductoiso 95.5 0.043 9.3E-07 51.3 6.9 67 39-118 14-80 (335)
499 COG0686 Ald Alanine dehydrogen 95.5 0.065 1.4E-06 49.7 7.9 102 38-157 165-267 (371)
500 PRK12748 3-ketoacyl-(acyl-carr 95.5 0.4 8.6E-06 42.3 12.9 35 40-76 4-40 (256)
No 1
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4e-58 Score=422.81 Aligned_cols=235 Identities=71% Similarity=1.085 Sum_probs=217.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~ 121 (279)
|||+||||+|+||+++|+.|+.+++++||+|+|++.++|+++||.|......++.+.+++|++++++|||+||+|||.|+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 59999998899999999999999999999999998778999999998744456543233466799999999999999999
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHH
Q 023671 122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEV 201 (279)
Q Consensus 122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~ 201 (279)
++|++|+|++..|++++++++++|++++|++|+|++|||+|+||+++++++++.+++|++||||+|.|||+||++++|++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~~~s~~p~~rviG~~~LDs~R~~~~la~~ 160 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLKKAGVYDPKRLFGVTTLDVVRANTFVAEL 160 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHHHhcCCCHHHEEeeechHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred cCCCCCCCcceeecCC-CCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671 202 LGLDPRDVDVPVVGGH-AGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 202 l~v~~~~V~~~ViGeh-g~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~ 277 (279)
+|++|++|+++||||| |+ ++||+||++.+...++++++++|.++|+++|++|+++|.|||+|+||+|.+++++++
T Consensus 161 l~v~~~~V~~~v~GeHsGd-s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~~a~a~~~iv~ 236 (310)
T cd01337 161 LGLDPAKVNVPVIGGHSGV-TILPLLSQCQPPFTFDQEEIEALTHRIQFGGDEVVKAKAGAGSATLSMAYAGARFAN 236 (310)
T ss_pred hCcCHHHEEEEEEecCCCC-ceecccccccccccCCHHHHHHHHHHHHHHHHHHHhCccCCCCcchhHHHHHHHHHH
Confidence 9999999999999999 78 999999999885456666789999999999999999877889999999999999986
No 2
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=100.00 E-value=6.4e-57 Score=415.34 Aligned_cols=235 Identities=63% Similarity=0.995 Sum_probs=215.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRK 122 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~k 122 (279)
||+||||+|+||+++|+.|+.+++++||+|+|++++.|+++||.|......++.+.+.++++++++|||+||+|+|.|++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~ 80 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK 80 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence 79999999999999999999999999999999998889999999986433455322223457899999999999999999
Q ss_pred CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHc
Q 023671 123 PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVL 202 (279)
Q Consensus 123 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l 202 (279)
+|++|+|++..|++++++++++|.+++|++++|++|||+|++++++++++++.+++|++||||+|.|||+|||++||+++
T Consensus 81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g~LDsaR~r~~la~~l 160 (312)
T TIGR01772 81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVTTLDIVRANTFVAELK 160 (312)
T ss_pred CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeeecchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999888999999999999999998899999999999999
Q ss_pred CCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671 203 GLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 203 ~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~ 277 (279)
+++|++|+++||||||+++++|+||++++...++++++++|.++|+++|++|+++|.|||+|+||+|.|++++++
T Consensus 161 ~v~~~~v~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~gkg~t~~~ia~a~~~iv~ 235 (312)
T TIGR01772 161 GKDPMEVNVPVIGGHSGETIIPLISQCPGKVLFTEDQLEALIHRIQNAGTEVVKAKAGAGSATLSMAFAGARFVL 235 (312)
T ss_pred CCCHHHeEEEEEEecCCCccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCccCCCChhHHHHHHHHHHHH
Confidence 999999999999999876999999999865446666789999999999999999876899999999999998876
No 3
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=5.8e-56 Score=405.51 Aligned_cols=226 Identities=41% Similarity=0.614 Sum_probs=204.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+||+|||| |+||+++|+.|+.+++.+|++|+|+++ ++|.++||.|.... ...+... +.+ +++++|||+||++|
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~-~~~-y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITG-DGD-YEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEec-CCC-hhhhcCCCEEEEeC
Confidence 59999999 999999999998888888999999997 79999999998743 2344332 245 58899999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHH
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 196 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~ 196 (279)
|.||||||+|+|++..|++|+++++++|.+++||++++++|||+|+|||++ |+.+++|++||||+ |.|||+||++
T Consensus 78 G~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvtNPvD~~ty~~----~k~sg~p~~rvig~gt~LDsaR~~~ 153 (313)
T COG0039 78 GVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVTNPVDILTYIA----MKFSGFPKNRVIGSGTVLDSARFRT 153 (313)
T ss_pred CCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEecCcHHHHHHHH----HHhcCCCccceecccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999865 78899999999999 8999999999
Q ss_pred HHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----C-C---CHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHH
Q 023671 197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----S-F---TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSM 268 (279)
Q Consensus 197 ~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----~-~---~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~ 268 (279)
+||++++++|++|+++|+||||+ ++||+||++++++ + + +++++++|.++||++|++|+++| |.| ++||+
T Consensus 154 ~lae~~~v~~~~V~~~ViGeHGd-t~vp~~S~a~v~G~pl~~~~~~~~~~~~~~i~~~v~~~g~eII~~k-G~~-t~~~~ 230 (313)
T COG0039 154 FLAEKLGVSPKDVHAYVIGEHGD-TMVPLWSQATVGGKPLEELLKEDTEEDLEELIERVRNAGAEIIEAK-GAG-TYYGP 230 (313)
T ss_pred HHHHHhCCChhHceeeEeccCCC-ceEEeeeeeeECCEEHHHHhhcccHhHHHHHHHHHHhhHHHHHHcc-Ccc-chhhH
Confidence 99999999999999999999999 9999999999975 1 2 23567899999999999999998 555 99999
Q ss_pred HHHHHHHHh
Q 023671 269 RLNLRMHAS 277 (279)
Q Consensus 269 A~a~~~~~~ 277 (279)
|.|++++++
T Consensus 231 A~a~a~~~~ 239 (313)
T COG0039 231 AAALARMVE 239 (313)
T ss_pred HHHHHHHHH
Confidence 999999986
No 4
>PLN00106 malate dehydrogenase
Probab=100.00 E-value=7.7e-55 Score=403.04 Aligned_cols=246 Identities=79% Similarity=1.185 Sum_probs=226.5
Q ss_pred hhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCC
Q 023671 32 KCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMD 111 (279)
Q Consensus 32 ~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~AD 111 (279)
.|+++++..+.||+||||+|+||+++++.|+.+++++||+|+|+++++++++||.|......+..+.+++|++++++|||
T Consensus 9 ~~~~~~~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aD 88 (323)
T PLN00106 9 ACRAKGGAPGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGAD 88 (323)
T ss_pred ccccccCCCCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCC
Confidence 69999999999999999999999999999999999999999999988899999999876555655445667889999999
Q ss_pred EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhH
Q 023671 112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDV 191 (279)
Q Consensus 112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds 191 (279)
+||++||.|+++|++|+|++..|+++++++++++++++|+++++++|||+|.+++++++++++.+++||+||||+|.||+
T Consensus 89 iVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~~LDs 168 (323)
T PLN00106 89 LVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVTTLDV 168 (323)
T ss_pred EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEecchH
Confidence 99999999999999999999999999999999999999999999999999966666667778999999999999988999
Q ss_pred HHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHH
Q 023671 192 VRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLN 271 (279)
Q Consensus 192 ~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a 271 (279)
+||++++|+++|+++.+|+++|+||||++++||+||++++...++++++++|.++|+++|++|+++|.|||+|+||+|.+
T Consensus 169 ~Rl~~~lA~~lgv~~~~V~~~ViGeHg~~s~vp~~S~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~~~a~a 248 (323)
T PLN00106 169 VRANTFVAEKKGLDPADVDVPVVGGHAGITILPLLSQATPKVSFTDEEIEALTKRIQNGGTEVVEAKAGAGSATLSMAYA 248 (323)
T ss_pred HHHHHHHHHHhCCChhheEEEEEEeCCCccEeeehhcceecccCCHHHHHHHHHHHHHHHHHHHhCccCCCCchHHHHHH
Confidence 99999999999999999999999999766999999999775446677799999999999999999876889999999999
Q ss_pred HHHHHh
Q 023671 272 LRMHAS 277 (279)
Q Consensus 272 ~~~~~~ 277 (279)
++++++
T Consensus 249 ~~~ii~ 254 (323)
T PLN00106 249 AARFAD 254 (323)
T ss_pred HHHHHH
Confidence 999986
No 5
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.3e-55 Score=386.88 Aligned_cols=224 Identities=23% Similarity=0.373 Sum_probs=207.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC---CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT---GAVVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~---~~~v~~~~~~~d~~eal~~ADiVIi 115 (279)
..||+|+|+ |.||+++|+.++.+++.+|++|+|.++ ++|++|||+|... .+++.. ..| +.+.+++++||+
T Consensus 20 ~~KItVVG~-G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~---~~D-y~~sa~S~lvIi 94 (332)
T KOG1495|consen 20 HNKITVVGV-GQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVA---SKD-YSVSANSKLVII 94 (332)
T ss_pred CceEEEEcc-chHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhccccccccCCceEe---cCc-ccccCCCcEEEE
Confidence 569999999 999999999999999999999999998 8999999999864 344443 347 478999999999
Q ss_pred ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 194 (279)
Q Consensus 116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~ 194 (279)
|||..+++|++|++++++|+.+++.+++++.+|.|+++++++|||+|+|||++ ||.+|||++||||. |+|||+||
T Consensus 95 TAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~----wKLSgfP~nRViGsGcnLDsaRF 170 (332)
T KOG1495|consen 95 TAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVT----WKLSGFPKNRVIGSGCNLDSARF 170 (332)
T ss_pred ecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHH----HHHcCCcccceeccCcCccHHHH
Confidence 99999999999999999999999999999999999999999999999999765 99999999999999 99999999
Q ss_pred HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC------------CCCHHHHHHHHHHHHhhHHHHHhhhcCCC
Q 023671 195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAG 262 (279)
Q Consensus 195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~g~g 262 (279)
|++++++||++|+++++||+||||| +.||+||.+.+.+ ..+++.|+++.++|.+++||||++| |
T Consensus 171 ryLi~~~Lg~~pss~hgwIiGEHGd-SsV~vWSgvniAGv~l~~l~~~~~t~~d~e~w~eihK~v~~sayeviklK---G 246 (332)
T KOG1495|consen 171 RYLIGNRLGVHPSSCHGWIIGEHGD-SSVPVWSGVNIAGVSLKDLNPDLGTDYDPENWKEIHKQVVDSAYEVIKLK---G 246 (332)
T ss_pred HHHHHHHhCCCcccceEEEeeccCC-ccceecccccccceEHhHhChhhcCCCCHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 9999999999999999999999999 8999999998853 1356779999999999999999976 7
Q ss_pred cchHHHHHHHHHHHh
Q 023671 263 SATLSMRLNLRMHAS 277 (279)
Q Consensus 263 s~~~s~A~a~~~~~~ 277 (279)
+|.|++|++++++++
T Consensus 247 yTswaIglsva~l~~ 261 (332)
T KOG1495|consen 247 YTSWAIGLSVADLAQ 261 (332)
T ss_pred chHHHHHHHHHHHHH
Confidence 999999999999875
No 6
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=7.9e-54 Score=394.52 Aligned_cols=223 Identities=27% Similarity=0.370 Sum_probs=202.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC---CeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG---AVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~---~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
||+|||+ |+||+++|+.|+.+++++||+|+|+++ ++|+++||.|.... .+++... .| +++++|||+||+||
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~--~~-y~~~~~aDivvita 76 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRA--GD-YDDCADADIIVITA 76 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEE--CC-HHHhCCCCEEEECC
Confidence 7999999 999999999999999999999999987 78999999997642 2455543 46 58899999999999
Q ss_pred CCCCCCCCc--hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671 118 GVPRKPGMT--RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 194 (279)
Q Consensus 118 g~~~k~g~~--r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~ 194 (279)
|.|+++|++ |+|++..|++++++++++|.+++|+++++++|||+|+|||++ ++.+|+|++||||+ |.|||+||
T Consensus 77 G~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~----~k~sg~p~~rviG~gt~LDs~R~ 152 (307)
T cd05290 77 GPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIA----ATEFDYPANKVIGTGTMLDTARL 152 (307)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHH----HHHhCcChhheecccchHHHHHH
Confidence 999999999 699999999999999999999999999999999999999765 77889999999999 99999999
Q ss_pred HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----C-----CHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671 195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----F-----TQEETEYLTNRIQNGGTEVVEAKAGAGSA 264 (279)
Q Consensus 195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~-----~~~~~~~i~~~v~~~~~~i~~~k~g~gs~ 264 (279)
++++|+++|++|++|+++||||||+ +++|+||++++++ + + ++.++++|.++++++|++|++. ||+|
T Consensus 153 ~~~la~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~v~g~~l~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---KG~t 228 (307)
T cd05290 153 RRIVADKYGVDPKNVTGYVLGEHGS-HAFPVWSLVNIAGLPLDELEALFGKEPIDKDELLEEVVQAAYDVFNR---KGWT 228 (307)
T ss_pred HHHHHHHhCCCcccEEEEEEecCCC-ceEEeeeeeEECCEEHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHc---cCee
Confidence 9999999999999999999999999 9999999999865 1 1 1224789999999999999995 5789
Q ss_pred hHHHHHHHHHHHh
Q 023671 265 TLSMRLNLRMHAS 277 (279)
Q Consensus 265 ~~s~A~a~~~~~~ 277 (279)
+|++|.+++++++
T Consensus 229 ~~~ia~a~~~ii~ 241 (307)
T cd05290 229 NAGIAKSASRLIK 241 (307)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999986
No 7
>PTZ00325 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-52 Score=385.16 Aligned_cols=237 Identities=63% Similarity=0.950 Sum_probs=213.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.+|.||+||||+|.||+++++.|+.+++++||+|+|++.+.++++||.|......+.......+++++++|||+||+++|
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 35669999998899999999999999999999999996589999999998654344433222343689999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHH
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 198 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~l 198 (279)
.+++++++|.+++..|++++++++++|++++|+++++++|||+|+|++++.+.+++.+++||+||||++.|||+||+++|
T Consensus 86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPvdv~~~~~~~~~~~~sg~p~~~viG~g~LDs~R~r~~l 165 (321)
T PTZ00325 86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPVNSTVPIAAETLKKAGVYDPRKLFGVTTLDVVRARKFV 165 (321)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHhhhhhccCCChhheeechhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987555578899999999999779999999999
Q ss_pred HHHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671 199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 199 a~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~ 277 (279)
|+++|++|++|+++|+||||++++||+||++.+ +++++++++|.++|+++|++|+++|+|||+|+|++|.+++++++
T Consensus 166 a~~l~v~~~~V~~~VlGeHGd~s~v~~~S~~g~--~l~~~~~~~i~~~v~~~g~~Ii~~k~~kg~t~~g~a~a~~~i~~ 242 (321)
T PTZ00325 166 AEALGMNPYDVNVPVVGGHSGVTIVPLLSQTGL--SLPEEQVEQITHRVQVGGDEVVKAKEGAGSATLSMAYAAAEWST 242 (321)
T ss_pred HHHhCcChhheEEEEEeecCCcccccchhccCC--CCCHHHHHHHHHHHHHHHHHHHhcccCCCCchHHHHHHHHHHHH
Confidence 999999999999999999998569999999943 57777899999999999999999987889999999999999876
No 8
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.7e-52 Score=386.60 Aligned_cols=226 Identities=24% Similarity=0.341 Sum_probs=202.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCe-EEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAV-VRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~-v~~~~~~~d~~eal~~ADiVIita 117 (279)
.+||+|||| |+||+++|+.|+.+++++||+|+|+++ ++|+++||+|+..... .... .++|+ ++++|||+||+|+
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~-~~~dy-~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIE-ADKDY-SVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEE-ECCCH-HHhCCCCEEEECC
Confidence 469999998 999999999999999999999999987 7899999999873221 1222 23575 6799999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHH
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 196 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~ 196 (279)
|.++++|++|+|++..|+++++++++.|++++|++++|++|||+|+||+++ ++.+++|++||||+ |.||++|+++
T Consensus 80 G~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~k~sg~p~~~viG~gt~Ld~~R~~~ 155 (312)
T cd05293 80 GARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVA----WKLSGLPKHRVIGSGCNLDSARFRY 155 (312)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHH----HHHhCCCHHHEEecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999755 77789999999999 9999999999
Q ss_pred HHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCCC------------CCHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671 197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCS------------FTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264 (279)
Q Consensus 197 ~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~------------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~ 264 (279)
++|+++++++++|+++|+||||+ +++|+||++++++. .+++++++|.++++++|++|++. ||+|
T Consensus 156 ~la~~l~v~~~~v~~~v~GeHG~-s~vp~~S~~~i~g~~l~~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t 231 (312)
T cd05293 156 LIAERLGVAPSSVHGWIIGEHGD-SSVPVWSGVNVAGVRLQDLNPDIGTDKDPEKWKEVHKQVVDSAYEVIKL---KGYT 231 (312)
T ss_pred HHHHHhCCChhhEEEEEeecCCC-CccccceeceECCEEHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHh---cCCc
Confidence 99999999999999999999998 99999999998641 12345889999999999999995 4789
Q ss_pred hHHHHHHHHHHHh
Q 023671 265 TLSMRLNLRMHAS 277 (279)
Q Consensus 265 ~~s~A~a~~~~~~ 277 (279)
+|++|.+++++++
T Consensus 232 ~~~~a~a~~~ii~ 244 (312)
T cd05293 232 SWAIGLSVADLVD 244 (312)
T ss_pred hHHHHHHHHHHHH
Confidence 9999999999986
No 9
>PLN02602 lactate dehydrogenase
Probab=100.00 E-value=8e-52 Score=386.71 Aligned_cols=225 Identities=24% Similarity=0.392 Sum_probs=202.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
+||+|||+ |.||+++|+.|+.+++++||+|+|+++ ++|+++||.|.... ...+.. ..+| +++++|||+||+|||
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~-~~~d-y~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKIL-ASTD-YAVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEE-eCCC-HHHhCCCCEEEECCC
Confidence 59999998 999999999999999999999999988 78999999998632 223332 2346 477999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHH
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 197 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~ 197 (279)
.++++|++|.|++..|++++++++++|+++||++++|++|||+|++|+++ ++.+++|++||||+ |.||++|++++
T Consensus 115 ~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtNPvdv~t~~~----~k~sg~p~~rviG~gt~LDs~R~r~~ 190 (350)
T PLN02602 115 ARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSNPVDVLTYVA----WKLSGFPANRVIGSGTNLDSSRFRFL 190 (350)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHH----HHHhCCCHHHEEeecchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 66779999999999 69999999999
Q ss_pred HHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC------------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671 198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265 (279)
Q Consensus 198 la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~ 265 (279)
+|+++|+++++|+++||||||+ +++|+||++++++ .++++++++|.++++++|++|++. ||+|+
T Consensus 191 lA~~l~v~~~~V~~~ViGeHGd-s~vp~wS~~~i~G~pl~~~~~~~~~~~~~~~~~~i~~~v~~~g~eIi~~---KG~t~ 266 (350)
T PLN02602 191 IADHLDVNAQDVQAYIVGEHGD-SSVALWSSVSVGGVPVLSFLEKQQIAYEKETLEEIHRAVVDSAYEVIKL---KGYTS 266 (350)
T ss_pred HHHHhCCCccceeeeEEecCCC-ceEeeeeeeeECCEEHHHHhhccCCccCHHHHHHHHHHHHHHHHHHHhc---CCccH
Confidence 9999999999999999999998 9999999998854 123345789999999999999995 57899
Q ss_pred HHHHHHHHHHHh
Q 023671 266 LSMRLNLRMHAS 277 (279)
Q Consensus 266 ~s~A~a~~~~~~ 277 (279)
|++|.+++++++
T Consensus 267 ~gia~a~a~ii~ 278 (350)
T PLN02602 267 WAIGYSVASLVR 278 (350)
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 10
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=100.00 E-value=9.8e-52 Score=382.73 Aligned_cols=227 Identities=29% Similarity=0.409 Sum_probs=200.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccC-C-CeEEEEeCCCCHHhhhC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALT 108 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~-~-~~v~~~~~~~d~~eal~ 108 (279)
++.||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||.|... . ..++.. .++ +++++
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 78 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVAT--TDP-EEAFK 78 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEe--cCh-HHHhC
Confidence 46799999988999999999999999999 999999954 6899999999862 1 223322 234 68999
Q ss_pred CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhC-CCCCCCeeee
Q 023671 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 186 (279)
Q Consensus 109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kViG~ 186 (279)
|||+||+|||.|+++|++|.|++..|++++++++++|++++| +++++++|||+|+|||++ ++.+ +||++||||+
T Consensus 79 daDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~ 154 (323)
T TIGR01759 79 DVDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPANTNALIA----SKNAPDIPPKNFSAM 154 (323)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEe
Confidence 999999999999999999999999999999999999999998 999999999999999865 6778 9999999999
Q ss_pred cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC-C----CCHHH--HHHHHHHHHhhHHHHHhhh
Q 023671 187 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK 258 (279)
Q Consensus 187 t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k 258 (279)
|.|||+|||++||+++|++|++|+ .+||||||+ +++|+||++++++ + +++++ +++|.++++++|++|+++|
T Consensus 155 t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k 233 (323)
T TIGR01759 155 TRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHSN-TQVPDFTHATVDGRPVKEVIKDDKWLEGEFIPTVQQRGAAVIEAR 233 (323)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEecCCC-ceeeccccCEECCccHHHHhcchhhHHHHHHHHHHhhHHHHHhcc
Confidence 999999999999999999999996 569999998 9999999999864 1 33333 6799999999999999965
Q ss_pred cCCCcchH-HHHHHHHHHHh
Q 023671 259 AGAGSATL-SMRLNLRMHAS 277 (279)
Q Consensus 259 ~g~gs~~~-s~A~a~~~~~~ 277 (279)
|+++| ++|.+++++++
T Consensus 234 ---G~t~~~~~a~a~~~iv~ 250 (323)
T TIGR01759 234 ---GASSAASAANAAIDHVR 250 (323)
T ss_pred ---CCcchHHHHHHHHHHHH
Confidence 66777 57799999886
No 11
>PRK05086 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.5e-51 Score=376.71 Aligned_cols=234 Identities=61% Similarity=0.935 Sum_probs=210.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
|||+||||+|.||+++++.|.. .+...+++|+|+++ ..++++|+.|......+... ..+|++++++|+|+||+|+|.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~-~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEe-CCCCHHHHcCCCCEEEEcCCC
Confidence 6999999999999999998865 56778999999987 67788999985322334431 134667899999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHH
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVA 199 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la 199 (279)
+++++++|.|++..|++++++++++|++++|+++++++|||+|+||+++++.+++.+++|++||||+|.|||+||++++|
T Consensus 80 ~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~D~~t~~~~~~~~~~sg~p~~rvig~~~Lds~R~~~~ia 159 (312)
T PRK05086 80 ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDVIRSETFVA 159 (312)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHHHHHHHhcCCCHHHEEeeecHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998888899999999999998899999999999
Q ss_pred HHcCCCCCCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671 200 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 200 ~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~ 277 (279)
+++|++|++|+++||||||++++||+||++ -+.+++++++++|.++|+++|++|+++|.|+|+|+||+|.+++++++
T Consensus 160 ~~l~~~~~~v~~~v~GeHg~~s~~p~~S~~-~g~~l~~~~~~~i~~~v~~~g~~ii~~k~~~g~t~~~~a~a~~~~v~ 236 (312)
T PRK05086 160 ELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARFGL 236 (312)
T ss_pred HHhCCChhheEEEEEEecCCCceecccccc-CCccCCHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHHHHHHH
Confidence 999999999999999999777999999999 33357777799999999999999999887889999999999999876
No 12
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=3.9e-51 Score=361.65 Aligned_cols=262 Identities=69% Similarity=1.051 Sum_probs=243.2
Q ss_pred hhHHHHHHhccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhc
Q 023671 8 NQRIARISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISH 87 (279)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~ 87 (279)
++++.|.++++-++. ..+|. ...+...||+|.||+|-+|+.+.++|+++++++++.|||+..+.|.+.||.|
T Consensus 3 ~~~~~~~~~~~~~~~--~~~~~------~~~~~~~KVAvlGAaGGIGQPLSLLlK~np~Vs~LaLYDi~~~~GVaaDlSH 74 (345)
T KOG1494|consen 3 LKSLIRSSASLSSGP--KRVFS------SGSQRGLKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIANTPGVAADLSH 74 (345)
T ss_pred hHHHHHhhhhhccCC--ccccc------ccccCcceEEEEecCCccCccHHHHHhcCcccceeeeeecccCCcccccccc
Confidence 577888888877521 22333 3345566999999999999999999999999999999999989999999999
Q ss_pred ccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHH
Q 023671 88 MDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPI 167 (279)
Q Consensus 88 ~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~ 167 (279)
+++...+..+.+.+.+++++++||+|||.||+||||||+|+|++..|+.|+++++..+.++||++.+.++|||+|.+.++
T Consensus 75 I~T~s~V~g~~g~~~L~~al~~advVvIPAGVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsNPVNstVPI 154 (345)
T KOG1494|consen 75 INTNSSVVGFTGADGLENALKGADVVVIPAGVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISNPVNSTVPI 154 (345)
T ss_pred cCCCCceeccCChhHHHHHhcCCCEEEecCCCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecCcccccchH
Confidence 99888899888778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCC-CCCcceeecCCCCceeeeecccCCCCCCCCHHHHHHHHHH
Q 023671 168 AAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGGHAGVTILPLLSQVKPPCSFTQEETEYLTNR 246 (279)
Q Consensus 168 ~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~-~~V~~~ViGehg~~~~vp~~S~~~v~~~~~~~~~~~i~~~ 246 (279)
++|++++.+.|+|+|+||+|.||..|.+.++++.++++| .+++++|+|+|.+.|++|++|+.++...+++++++.++.+
T Consensus 155 aaevlKk~G~ydpkklfGVTtLDvVRA~tFv~~~~~~~p~~~v~VPVIGGHaG~TIlPLlSQ~~p~~~~~~~~~~~Lt~R 234 (345)
T KOG1494|consen 155 AAEVLKKAGVYDPKKLFGVTTLDVVRANTFVAEVLNLDPAEDVDVPVIGGHAGITIIPLLSQCKPPFRFTDDEIEALTHR 234 (345)
T ss_pred HHHHHHHcCCCCccceeceehhhhhhHHHHHHHHhCCCchhcCCcceecCcCCceEeeecccCCCcccCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 5599999999988899999999998777899999999999
Q ss_pred HHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671 247 IQNGGTEVVEAKAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 247 v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~ 277 (279)
++.+|.|+.+.|.|+||+.+|+|+|.++|++
T Consensus 235 iQ~gGtEVV~AKaGaGSATLSMAyAga~fa~ 265 (345)
T KOG1494|consen 235 IQNGGTEVVKAKAGAGSATLSMAYAGAKFAD 265 (345)
T ss_pred HHhCCceEEEeccCCCchhhhHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 13
>PRK05442 malate dehydrogenase; Provisional
Probab=100.00 E-value=5.1e-51 Score=378.36 Aligned_cols=227 Identities=24% Similarity=0.358 Sum_probs=201.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhccc-CC-CeEEEEeCCCCHHhhhC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMD-TG-AVVRGFLGQPQLENALT 108 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~-~~-~~v~~~~~~~d~~eal~ 108 (279)
.++||+||||+|+||+++++.|...++++ ||+|+|+++ ++|+++||.|.. .. ..++.. +++ +++++
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-y~~~~ 79 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVIT--DDP-NVAFK 79 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEe--cCh-HHHhC
Confidence 46799999988999999999999999998 999999954 689999999986 21 234432 234 68999
Q ss_pred CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhC-CCCCCCeeee
Q 023671 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 186 (279)
Q Consensus 109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kViG~ 186 (279)
|||+||+|||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+|||++ ++.+ +||++||||+
T Consensus 80 daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~k~s~g~p~~rViG~ 155 (326)
T PRK05442 80 DADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTNALIA----MKNAPDLPAENFTAM 155 (326)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHHHHHH----HHHcCCCCHHHEEee
Confidence 99999999999999999999999999999999999999988 7999999999999999865 6677 9999999999
Q ss_pred cchhHHHHHHHHHHHcCCCCCCCcce-eecCCCCceeeeecccCCCCCC-----CCHHH--HHHHHHHHHhhHHHHHhhh
Q 023671 187 TMLDVVRANTFVAEVLGLDPRDVDVP-VVGGHAGVTILPLLSQVKPPCS-----FTQEE--TEYLTNRIQNGGTEVVEAK 258 (279)
Q Consensus 187 t~lds~R~~~~la~~l~v~~~~V~~~-ViGehg~~~~vp~~S~~~v~~~-----~~~~~--~~~i~~~v~~~~~~i~~~k 258 (279)
|.|||+|||++||++++++|++|+++ ||||||+ +++|+||++++++. +++++ +++|.++++++|++|+++
T Consensus 156 t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~- 233 (326)
T PRK05442 156 TRLDHNRALSQLAAKAGVPVADIKKMTVWGNHSA-TQYPDFRHATIDGKPAAEVINDQAWLEDTFIPTVQKRGAAIIEA- 233 (326)
T ss_pred eHHHHHHHHHHHHHHhCcChHHeEEeEEEECCcC-ceeeccccCEECCEEHHHHccchhhHHHHHHHHHHhhHHHHHhC-
Confidence 99999999999999999999999986 5899999 99999999999751 34433 579999999999999995
Q ss_pred cCCCcchHHHHHH-HHHHHh
Q 023671 259 AGAGSATLSMRLN-LRMHAS 277 (279)
Q Consensus 259 ~g~gs~~~s~A~a-~~~~~~ 277 (279)
||+++|++|.+ ++++++
T Consensus 234 --kG~t~~~~a~~~~~~iv~ 251 (326)
T PRK05442 234 --RGASSAASAANAAIDHVR 251 (326)
T ss_pred --cCCccHHHHHHHHHHHHH
Confidence 47888999999 588876
No 14
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=100.00 E-value=5.2e-51 Score=374.73 Aligned_cols=220 Identities=23% Similarity=0.399 Sum_probs=198.2
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671 46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (279)
Q Consensus 46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIitag~~~ 121 (279)
|||+ |+||+++|+.|+.+++++||+|+|+++ ++|+++||.|.... ..++.. ..+ +++++|||+||+|||.|+
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~daDivVitag~~r 76 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIR--SGD-YSDCKDADLVVITAGAPQ 76 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEe--cCC-HHHHCCCCEEEECCCCCC
Confidence 6898 999999999999999999999999987 79999999998632 234433 245 589999999999999999
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHHHHH
Q 023671 122 KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAE 200 (279)
Q Consensus 122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~la~ 200 (279)
++||+|.|++..|++++++++++|++++|++++|++|||+|+||+++ ++.+++|++||||+ |.|||+|+++++|+
T Consensus 77 k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~----~~~sg~p~~~viG~gt~LDs~R~~~~la~ 152 (299)
T TIGR01771 77 KPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATNPVDILTYVA----WKLSGFPKNRVIGSGTVLDTARLRYLLAE 152 (299)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----HHHhCCCHHHEEeccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999765 67789999999999 89999999999999
Q ss_pred HcCCCCCCCcceeecCCCCceeeeecccCCCCC-C---C-C------HHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHH
Q 023671 201 VLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---F-T------QEETEYLTNRIQNGGTEVVEAKAGAGSATLSMR 269 (279)
Q Consensus 201 ~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~---~-~------~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A 269 (279)
+++++|++|+++||||||+ +++|+||++++++ + + + +.++++|.++++++|++|++. ||+|+|++|
T Consensus 153 ~l~v~~~~V~~~v~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kG~t~~~~a 228 (299)
T TIGR01771 153 KLGVDPQSVHAYIIGEHGD-SEVPVWSSATIGGVPLLDYLKAKGTETDLDLEEIEKEVRDAAYEIINR---KGATYYGIG 228 (299)
T ss_pred HhCcCcCeEEEEEEecCCC-ceeeceeeeEECCEEHHHHhhhcccccHHHHHHHHHHHHHHHHHHhhc---CCeeeHHHH
Confidence 9999999999999999998 9999999999865 1 1 1 234779999999999999995 578999999
Q ss_pred HHHHHHHh
Q 023671 270 LNLRMHAS 277 (279)
Q Consensus 270 ~a~~~~~~ 277 (279)
.+++++++
T Consensus 229 ~a~~~~i~ 236 (299)
T TIGR01771 229 MAVARIVE 236 (299)
T ss_pred HHHHHHHH
Confidence 99999986
No 15
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=100.00 E-value=8e-50 Score=369.41 Aligned_cols=225 Identities=24% Similarity=0.391 Sum_probs=203.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
.+||+|||| |.||+++++.|+.+++++||+|+|+++ ++|+++||.|.... .++... +++ +++++|||+||+++
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~--~~~-~~~~~~adivIita 81 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIY--AGD-YSDCKDADLVVITA 81 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEE--eCC-HHHhCCCCEEEEec
Confidence 469999999 999999999999999999999999987 78999999998632 234443 245 57899999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHH
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 196 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~ 196 (279)
|.|+++|++|.|++..|+++++++++.+++++|+++++++|||+|+||+++ ++.+++|++||||+ |.|||.|+++
T Consensus 82 g~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~~~----~k~sg~p~~~viG~gt~LDs~R~~~ 157 (315)
T PRK00066 82 GAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTYAT----WKLSGFPKERVIGSGTSLDSARFRY 157 (315)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHHHH----HHHhCCCHHHEeecCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999765 66689999999999 7899999999
Q ss_pred HHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671 197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265 (279)
Q Consensus 197 ~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~ 265 (279)
++|+++|++|++|+++||||||+ +++|+||++++++ .+++++++++.++++++|++|++. ||++.
T Consensus 158 ~la~~l~v~~~~V~~~viGeHG~-s~v~~~S~~~v~g~~l~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~---kg~t~ 233 (315)
T PRK00066 158 MLSEKLDVDPRSVHAYIIGEHGD-TEFPVWSHANVAGVPLEEYLEENEQYDEEDLDEIFENVRDAAYEIIEK---KGATY 233 (315)
T ss_pred HHHHHhCCCcccEEEEEEecCCC-cceecceeceECCEEHHHHhhhccCcCHHHHHHHHHHHHHHHHHHHhc---CCeeh
Confidence 99999999999999999999998 9999999999864 134466889999999999999995 47899
Q ss_pred HHHHHHHHHHHh
Q 023671 266 LSMRLNLRMHAS 277 (279)
Q Consensus 266 ~s~A~a~~~~~~ 277 (279)
|++|.+++++++
T Consensus 234 ~~~a~~~~~i~~ 245 (315)
T PRK00066 234 YGIAMALARITK 245 (315)
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 16
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=100.00 E-value=2.8e-49 Score=377.53 Aligned_cols=228 Identities=24% Similarity=0.272 Sum_probs=200.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhC-------CCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhh
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKIN-------PLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENAL 107 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~-------~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal 107 (279)
.++.||+||||+|+||+++++.|+.+ +++.||+|+|+++ ++|+++||+|... ...+... +.+ ++++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~--~~~-ye~~ 174 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIG--IDP-YEVF 174 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence 45679999999999999999999998 7778999999988 7999999999862 1234322 345 6899
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-hCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-CCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~-~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~ 186 (279)
+|||+||++||.|+++|++|.|++..|++++++++++|++ ++|++++|++|||+|+||+++ ++.++++++|+||+
T Consensus 175 kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~----~k~sg~~~~rViGt 250 (444)
T PLN00112 175 QDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALIC----LKNAPNIPAKNFHA 250 (444)
T ss_pred CcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHH----HHHcCCCCcceEEe
Confidence 9999999999999999999999999999999999999999 589999999999999999765 77789999999999
Q ss_pred -cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC-C----CCHHH--HHHHHHHHHhhHHHHHhh
Q 023671 187 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEA 257 (279)
Q Consensus 187 -t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~~~~i~~~ 257 (279)
|.||++||+++||+++|+++++|+ ++||||||+ ++||+||++++++ + +++.+ +++|.++++++|++|++.
T Consensus 251 gT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd-sqvp~wS~a~V~G~pl~e~i~~~~~~~~ei~~~v~~~g~~Ii~~ 329 (444)
T PLN00112 251 LTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST-TQVPDFLNAKINGLPVKEVITDHKWLEEEFTPKVQKRGGVLIKK 329 (444)
T ss_pred eccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC-ceeeccceeEECCccHHHhhccccchHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999994 689999999 9999999999975 2 33334 679999999999999995
Q ss_pred hcCCCcchH-HHHHHHHHHHh
Q 023671 258 KAGAGSATL-SMRLNLRMHAS 277 (279)
Q Consensus 258 k~g~gs~~~-s~A~a~~~~~~ 277 (279)
| |++++ ++|.+++++++
T Consensus 330 k---G~t~~~s~a~ai~~~I~ 347 (444)
T PLN00112 330 W---GRSSAASTAVSIADAIK 347 (444)
T ss_pred c---CchhHHHHHHHHHHHHH
Confidence 5 44555 99999999875
No 17
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=2.1e-49 Score=367.47 Aligned_cols=224 Identities=31% Similarity=0.445 Sum_probs=196.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMD 111 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~AD 111 (279)
||+||||+|+||+++++.|+.+++++ +|+|+|+++ ++|+++||.|... ....... . +.+++++|||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~--~-~~~~~~~~aD 78 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVIT--T-DPEEAFKDVD 78 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEe--c-ChHHHhCCCC
Confidence 89999999999999999999999888 499999985 6899999999852 2223322 2 3478999999
Q ss_pred EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCC-CCCCCeeeecch
Q 023671 112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGT-YDPKKLLGVTML 189 (279)
Q Consensus 112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~-~~~~kViG~t~l 189 (279)
+||++||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+||+++ ++.+| +|++||||+|.|
T Consensus 79 iVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~vig~t~L 154 (323)
T cd00704 79 VAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPANTNALIA----LKNAPNLPPKNFTALTRL 154 (323)
T ss_pred EEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEEEeeHH
Confidence 99999999999999999999999999999999999996 9999999999999999765 67788 599999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCCC---------CCHH-HHHHHHHHHHhhHHHHHhhh
Q 023671 190 DVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPCS---------FTQE-ETEYLTNRIQNGGTEVVEAK 258 (279)
Q Consensus 190 ds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~~---------~~~~-~~~~i~~~v~~~~~~i~~~k 258 (279)
||+|||++||++++++|++|+ ++||||||+ +++|+||++++++. ++++ ..++|.++++++|++|+++|
T Consensus 155 Ds~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~g~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~Ii~~k 233 (323)
T cd00704 155 DHNRAKAQVARKLGVRVSDVKNVIIWGNHSN-TQVPDLSNAVVYGPGGTEWVLDLLDEEWLNDEFVKTVQKRGAAIIKKR 233 (323)
T ss_pred HHHHHHHHHHHHhCcCHHHceeeeEEecccC-ceeeccccceecCccHHHhcccccChHHHHHHHHHHHHhhHHHHHhcc
Confidence 999999999999999999995 689999999 99999999998642 2222 25789999999999999965
Q ss_pred cCCCcchHH-HHHHHHHHHh
Q 023671 259 AGAGSATLS-MRLNLRMHAS 277 (279)
Q Consensus 259 ~g~gs~~~s-~A~a~~~~~~ 277 (279)
|+++|+ +|.|++++++
T Consensus 234 ---g~t~~~~~a~a~~~iv~ 250 (323)
T cd00704 234 ---GASSAASAAKAIADHVK 250 (323)
T ss_pred ---CcchhHHHHHHHHHHHH
Confidence 567776 6999999986
No 18
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=100.00 E-value=3.5e-49 Score=371.79 Aligned_cols=228 Identities=24% Similarity=0.295 Sum_probs=198.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEE--eCCC--chhHHhhhhccc-C-CCeEEEEeCCCCHHhhh
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLY--DVVN--TPGVTADISHMD-T-GAVVRGFLGQPQLENAL 107 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~--D~~~--~~g~~~DL~~~~-~-~~~v~~~~~~~d~~eal 107 (279)
.++.||+||||+|+||+++|+.|+.+++++ +|+|+ |+++ ++|+++||.|.. . ...+... +++ ++++
T Consensus 42 ~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~--~~~-y~~~ 118 (387)
T TIGR01757 42 KKTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIG--IDP-YEVF 118 (387)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEe--cCC-HHHh
Confidence 456799999999999999999999999988 56677 6665 789999999986 2 2233322 345 6899
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~ 186 (279)
+|||+||+|||.|+++|++|.|++..|+++++++++.|++++ |++++|++|||+|+||+++ ++.+++|++|+||+
T Consensus 119 kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsNPvDv~t~v~----~k~sg~~~~rviG~ 194 (387)
T TIGR01757 119 EDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGNPCNTNALIA----MKNAPNIPRKNFHA 194 (387)
T ss_pred CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCcHHHHHHHH----HHHcCCCcccEEEe
Confidence 999999999999999999999999999999999999999987 9999999999999999765 67789999999999
Q ss_pred -cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC-C----CCHHH--HHHHHHHHHhhHHHHHhh
Q 023671 187 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEA 257 (279)
Q Consensus 187 -t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~~~~i~~~ 257 (279)
|.|||+|||++||++++++|++|+ ++||||||+ +++|+||++++++ + +++.+ +++|.++|+++|++|++.
T Consensus 195 gT~LDsaR~r~~LA~~l~v~~~~V~~~~V~GeHGd-s~vp~~S~a~V~G~pl~~~~~~~~~~~~ei~~~v~~~g~eIi~~ 273 (387)
T TIGR01757 195 LTRLDENRAKCQLALKSGKFYTSVSNVTIWGNHST-TQVPDFVNAKIGGRPAKEVIKDTKWLEEEFTPTVQKRGGALIKK 273 (387)
T ss_pred cchhHHHHHHHHHHHHHCcChhHcceeEEEecCCC-cEEecceeeEECCEEhHHhcccccchHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999995 999999998 9999999999865 2 22223 679999999999999996
Q ss_pred hcCCCcchH-HHHHHHHHHHh
Q 023671 258 KAGAGSATL-SMRLNLRMHAS 277 (279)
Q Consensus 258 k~g~gs~~~-s~A~a~~~~~~ 277 (279)
| |++.+ ++|.+++++++
T Consensus 274 K---G~t~~~s~a~ai~~~i~ 291 (387)
T TIGR01757 274 W---GRSSAASTAVSIADAIK 291 (387)
T ss_pred c---CchhHHHHHHHHHHHHH
Confidence 5 44444 99999999875
No 19
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=100.00 E-value=7.3e-49 Score=361.86 Aligned_cols=224 Identities=25% Similarity=0.377 Sum_probs=200.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+||+|||+ |.||+++++.|+..++..+|+|+|+++ +++.++||.|... ....... ..+ ++++++||+||+|+
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~--~~~-~~~l~~aDIVIita 76 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIK--AGD-YSDCKDADIVVITA 76 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEE--cCC-HHHhCCCCEEEEcc
Confidence 38999998 999999999999999888999999987 6889999998753 1223332 235 46799999999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHH
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANT 196 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~ 196 (279)
|.|+++|++|.|++..|++++++++++|++++|++++|++|||+|+||+++ ++.+++|++||||+ |.||++|+++
T Consensus 77 g~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~----~~~~g~p~~~v~g~gt~LDs~R~~~ 152 (306)
T cd05291 77 GAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVV----QKLSGLPKNRVIGTGTSLDTARLRR 152 (306)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHH----HHHhCcCHHHEeeccchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999765 66789999999999 7999999999
Q ss_pred HHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C---------CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchH
Q 023671 197 FVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S---------FTQEETEYLTNRIQNGGTEVVEAKAGAGSATL 266 (279)
Q Consensus 197 ~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~---------~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~ 266 (279)
++|+++++++++|+++||||||+ +++|+||++++++ + +.+++++++.++++++|++|++. ||+++|
T Consensus 153 ~la~~l~v~~~~v~~~V~G~Hg~-s~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~ii~~---kg~t~~ 228 (306)
T cd05291 153 ALAEKLNVDPRSVHAYVLGEHGD-SQFVAWSTVTVGGKPLLDLLKEGKLSELDLDEIEEDVRKAGYEIING---KGATYY 228 (306)
T ss_pred HHHHHHCCCcccceEEEEecCCC-ceeecceeeEEcCEEHHHHhhccccChHHHHHHHHHHHHHHHHHHHc---cCccHH
Confidence 99999999999999999999998 9999999999864 1 23456889999999999999995 578999
Q ss_pred HHHHHHHHHHh
Q 023671 267 SMRLNLRMHAS 277 (279)
Q Consensus 267 s~A~a~~~~~~ 277 (279)
++|.|++++++
T Consensus 229 ~~a~a~~~~~~ 239 (306)
T cd05291 229 GIATALARIVK 239 (306)
T ss_pred HHHHHHHHHHH
Confidence 99999999986
No 20
>PTZ00117 malate dehydrogenase; Provisional
Probab=100.00 E-value=3.1e-48 Score=359.54 Aligned_cols=228 Identities=32% Similarity=0.514 Sum_probs=203.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCC--eEEEEeCCCCHHhhhCCCCEEEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGA--VVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~--~v~~~~~~~d~~eal~~ADiVIi 115 (279)
+.+||+|||| |+||+++++.++..++ .+|+|+|+++ +.+.++|+.|..... ..+. ..++|+ ++++|||+||+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~-~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i-~~~~d~-~~l~~ADiVVi 79 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL-GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI-LGTNNY-EDIKDSDVVVI 79 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC-CeEEEEECCCccchhHHHHHhhhccccCCCeEE-EeCCCH-HHhCCCCEEEE
Confidence 4569999998 9999999999999997 6899999988 678999999975322 2232 224575 58999999999
Q ss_pred ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeec-chhHHHH
Q 023671 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRA 194 (279)
Q Consensus 116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t-~lds~R~ 194 (279)
++|.++++|++|.|++..|.++++++++.|+++||++|++++|||+|++|+++ ++.+++|++||+|+| .||++|+
T Consensus 80 tag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~----~~~s~~p~~rviG~gt~lds~R~ 155 (319)
T PTZ00117 80 TAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVF----QEKSGIPSNKICGMAGVLDSSRF 155 (319)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHH----HHhhCCCcccEEEecchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999654 677899999999995 8999999
Q ss_pred HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcc
Q 023671 195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSA 264 (279)
Q Consensus 195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~ 264 (279)
+++||++++++|++|+++|+||||+ +++|+||++++++ .++++++++|.++++++|++|++++ |||++
T Consensus 156 ~~~la~~l~v~~~~v~~~viGeHg~-~~v~~~s~~~v~g~p~~~~~~~~~~~~~~~~~i~~~v~~~g~~ii~~~-~kg~t 233 (319)
T PTZ00117 156 RCNLAEKLGVSPGDVSAVVIGGHGD-LMVPLPRYCTVNGIPLSDFVKKGAITEKEINEIIKKTRNMGGEIVKLL-KKGSA 233 (319)
T ss_pred HHHHHHHhCCCcccceEEEeecCCC-cEEeceeeceECCEEHHHHhhccccCHHHHHHHHHHHHHHHHHHHhhc-CCCCh
Confidence 9999999999999999999999998 9999999999864 1456668899999999999999986 78999
Q ss_pred hHHHHHHHHHHHh
Q 023671 265 TLSMRLNLRMHAS 277 (279)
Q Consensus 265 ~~s~A~a~~~~~~ 277 (279)
.|++|++++++++
T Consensus 234 ~~~~a~a~~~~~~ 246 (319)
T PTZ00117 234 FFAPAAAIVAMIE 246 (319)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999986
No 21
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=1.2e-48 Score=362.37 Aligned_cols=227 Identities=23% Similarity=0.341 Sum_probs=200.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccC--CCeEEEEeCCCCHHhhhC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT 108 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~ 108 (279)
+++||+||||+|+||+++++.|+.+++++ ||+|+|+++ ++|+++||.|... ...++.. +.+ +++++
T Consensus 1 ~p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~--~~~-~~~~~ 77 (322)
T cd01338 1 KPVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVIT--DDP-NVAFK 77 (322)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEe--cCc-HHHhC
Confidence 46799999988999999999999999999 999999954 6899999999862 1234432 334 68999
Q ss_pred CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhC-CCCCCCeeee
Q 023671 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLLGV 186 (279)
Q Consensus 109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kViG~ 186 (279)
|||+||+|||.|+++|++|.|++..|++++++++++|++++ |++++|++|||+|+||+++ ++.+ ++|++||||+
T Consensus 78 daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~sg~~p~~~ViG~ 153 (322)
T cd01338 78 DADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIA----MKNAPDIPPDNFTAM 153 (322)
T ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHH----HHHcCCCChHheEEe
Confidence 99999999999999999999999999999999999999999 5999999999999999865 5677 5999999999
Q ss_pred cchhHHHHHHHHHHHcCCCCCCCcc-eeecCCCCceeeeecccCCCCC-C----CCHHH--HHHHHHHHHhhHHHHHhhh
Q 023671 187 TMLDVVRANTFVAEVLGLDPRDVDV-PVVGGHAGVTILPLLSQVKPPC-S----FTQEE--TEYLTNRIQNGGTEVVEAK 258 (279)
Q Consensus 187 t~lds~R~~~~la~~l~v~~~~V~~-~ViGehg~~~~vp~~S~~~v~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k 258 (279)
|.||++||++++|+++|+++++|++ +||||||+ +++|+||++++++ + +++.+ +++|.++++++|++|+++
T Consensus 154 t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG~-s~vp~~S~~~v~g~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~- 231 (322)
T cd01338 154 TRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHSP-TQYPDFTNATIGGKPAAEVINDRAWLEDEFIPTVQKRGAAIIKA- 231 (322)
T ss_pred hHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCcc-cEEEehhhcEECCEeHHHhcChHhhHHHHHHHHHHhhHHHHHhC-
Confidence 9999999999999999999999998 56999998 9999999998864 1 34433 579999999999999995
Q ss_pred cCCCcchHHHH-HHHHHHHh
Q 023671 259 AGAGSATLSMR-LNLRMHAS 277 (279)
Q Consensus 259 ~g~gs~~~s~A-~a~~~~~~ 277 (279)
||+++|++| .+++++++
T Consensus 232 --kG~t~~~~~a~a~~~iv~ 249 (322)
T cd01338 232 --RGASSAASAANAAIDHMR 249 (322)
T ss_pred --cCCccHHHHHHHHHHHHH
Confidence 477889999 59999986
No 22
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.7e-48 Score=359.07 Aligned_cols=228 Identities=35% Similarity=0.601 Sum_probs=203.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIi 115 (279)
+.+||+|||| |.||+++++.++..++ .+|+|+|+++ +.+.++|+.|... ....+.. .++|+ ++++|||+||+
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl-~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~-~~~d~-~~l~~aDiVI~ 80 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNL-GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI-GTNNY-EDIAGSDVVIV 80 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC-CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE-ECCCH-HHhCCCCEEEE
Confidence 4579999998 9999999999999997 4699999988 5788999999742 1222332 24575 78999999999
Q ss_pred ccCCCCCCCC-----chhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeec-ch
Q 023671 116 PAGVPRKPGM-----TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-ML 189 (279)
Q Consensus 116 tag~~~k~g~-----~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t-~l 189 (279)
|+|.++++|+ +|.+++..|++++++++++|+++||++++|++|||+|++++.+ ++.+++|++||||+| .|
T Consensus 81 tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~----~~~sg~p~~rviGlgt~l 156 (321)
T PTZ00082 81 TAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLL----QEHSGLPKNKVCGMAGVL 156 (321)
T ss_pred CCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHhcCCChhhEEEecCcc
Confidence 9999999999 9999999999999999999999999999999999999999754 678899999999995 89
Q ss_pred hHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC----------CCCHHHHHHHHHHHHhhHHHHHhhhc
Q 023671 190 DVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC----------SFTQEETEYLTNRIQNGGTEVVEAKA 259 (279)
Q Consensus 190 ds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~----------~~~~~~~~~i~~~v~~~~~~i~~~k~ 259 (279)
|++|+++++|+++++++++|+++|+||||+ ++||+||++++++ .++++++++|.++++++|++|+++|
T Consensus 157 ds~R~~~~la~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~i~g~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~~- 234 (321)
T PTZ00082 157 DSSRLRTYIAEKLGVNPRDVHASVIGAHGD-KMVPLPRYVTVGGIPLSEFIKKGLITQEEIDEIVERTRNTGKEIVDLL- 234 (321)
T ss_pred cHHHHHHHHHHHhCCCcccceeeEEecCCC-ceEecceeeEECCEEHHHhhhcccCCHHHHHHHHHHHHHHHHHHHhhc-
Confidence 999999999999999999999999999998 9999999999864 1455668999999999999999987
Q ss_pred CCCcchHHHHHHHHHHHh
Q 023671 260 GAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 260 g~gs~~~s~A~a~~~~~~ 277 (279)
|||+|+|++|.+++++++
T Consensus 235 gkg~t~~~ia~a~~~i~~ 252 (321)
T PTZ00082 235 GTGSAYFAPAAAAIEMAE 252 (321)
T ss_pred CCCccHHHHHHHHHHHHH
Confidence 889999999999999986
No 23
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=100.00 E-value=2e-48 Score=358.07 Aligned_cols=223 Identities=29% Similarity=0.436 Sum_probs=200.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIitag~~ 120 (279)
|+|||+ |.||+++++.|+..+++.||+|+|+++ +.|.++||.|.... ...+... ++| +++++|||+||+++|.|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~-~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVR-GGD-YADAADADIVVITAGAP 77 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEE-CCC-HHHhCCCCEEEEcCCCC
Confidence 579998 999999999999999999999999987 78999999998642 2233322 345 57899999999999999
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHHHH
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVA 199 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~la 199 (279)
+++|++|.|++..|++++++++++|+++||++++|++|||+|+||+++ ++.+++|++||||+ |.|||+|+++++|
T Consensus 78 ~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sNP~d~~~~~~----~~~sg~~~~kviG~gt~lDs~r~~~~la 153 (300)
T cd00300 78 RKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSNPVDILTYVA----QKLSGLPKNRVIGSGTLLDSARFRSLLA 153 (300)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccChHHHHHHHH----HHHhCcCHHHEEecCCcHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999754 67789999999999 7899999999999
Q ss_pred HHcCCCCCCCcceeecCCCCceeeeecccCCCCC-CC------CHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHH
Q 023671 200 EVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-SF------TQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNL 272 (279)
Q Consensus 200 ~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~~------~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~ 272 (279)
+++++++++|+++|+||||+ +++|+||++++++ ++ ++.++++|.+++++++++|++. ||+++|++|.++
T Consensus 154 ~~l~v~~~~v~~~viGeHg~-s~v~~~S~~~v~g~p~~~~~~~~~~~~~~l~~~v~~~~~~ii~~---kg~t~~~~a~a~ 229 (300)
T cd00300 154 EKLDVDPQSVHAYVLGEHGD-SQVVAWSTATVGGLPLEELAPFTKLDLEAIEEEVRTSGYEIIRL---KGATNYGIATAI 229 (300)
T ss_pred HHhCCCcccEEEEEEeccCC-ceeeeeeeeEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHc---cCcchHHHHHHH
Confidence 99999999999999999998 9999999999864 21 2345789999999999999995 578999999999
Q ss_pred HHHHh
Q 023671 273 RMHAS 277 (279)
Q Consensus 273 ~~~~~ 277 (279)
+++++
T Consensus 230 ~~~~~ 234 (300)
T cd00300 230 ADIVK 234 (300)
T ss_pred HHHHH
Confidence 99986
No 24
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=100.00 E-value=3e-48 Score=357.53 Aligned_cols=224 Identities=31% Similarity=0.513 Sum_probs=201.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC----CCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT----GAVVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~----~~~v~~~~~~~d~~eal~~ADiVIi 115 (279)
+||+|||+ |.||+.+|+.++.+++. +|+|+|+++ ..|.++|+.|... ..+++. ++|+ +++++||+||+
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~-~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~---t~d~-~~~~~aDiVIi 75 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA-DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTG---TNNY-ADTANSDIVVI 75 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC-eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEe---cCCH-HHhCCCCEEEE
Confidence 59999998 99999999999999987 899999987 5678888887642 123332 4576 55999999999
Q ss_pred ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 194 (279)
Q Consensus 116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~ 194 (279)
|+|.|+++|++|.|++..|.+++++++++|.+++|++++|++|||+|+||+++ ++.+|+|++||||+ |.|||+||
T Consensus 76 tag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~----~~~sg~~~~rviG~g~~lds~R~ 151 (305)
T TIGR01763 76 TAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVA----WQKSGFPKERVIGQAGVLDSARF 151 (305)
T ss_pred cCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHEEEeccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999765 67789999999999 58999999
Q ss_pred HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHH
Q 023671 195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMR 269 (279)
Q Consensus 195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A 269 (279)
++++|++|+++|++|+++|+||||+ +++|+||++++++ + ++++++++|.++++++|++|+++| |||++.|++|
T Consensus 152 ~~~la~~l~v~~~~v~~~v~GeHg~-s~~~~wS~~~i~g~~~~~~~~~~~~~~l~~~v~~~g~~ii~~~-~kg~t~~~~a 229 (305)
T TIGR01763 152 RTFIAMELGVSVQDVTACVLGGHGD-AMVPLVRYSTVAGIPVADLISAERIAEIVERTRKGGGEIVNLL-KQGSAYYAPA 229 (305)
T ss_pred HHHHHHHhCcCHHHeeeeEEecCCC-cEEeeeeeeEECCEEHHHhcCHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHH
Confidence 9999999999999999999999999 9999999999875 2 445568999999999999999987 7899999999
Q ss_pred HHHHHHHh
Q 023671 270 LNLRMHAS 277 (279)
Q Consensus 270 ~a~~~~~~ 277 (279)
.+++++++
T Consensus 230 ~~~~~i~~ 237 (305)
T TIGR01763 230 ASVVEMVE 237 (305)
T ss_pred HHHHHHHH
Confidence 99999986
No 25
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=100.00 E-value=6.3e-48 Score=357.73 Aligned_cols=227 Identities=26% Similarity=0.362 Sum_probs=197.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEE
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV 113 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiV 113 (279)
||+||||+|+||+++++.|..+++++ +|+|+|+++ ++|+++||.|...... ..+..+++.+++++|||+|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~-~~~~~~~~~~~~~~~aDiV 79 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLL-DGVVPTHDPAVAFTDVDVA 79 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhc-CceeccCChHHHhCCCCEE
Confidence 68999999999999999999988875 799999954 5789999999862111 1112223446899999999
Q ss_pred EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhH
Q 023671 114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDV 191 (279)
Q Consensus 114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds 191 (279)
|+|||.|++++++|.+++..|++++++++++|++++ |++++|++|||+|+||+++ ++.++++++++||+ |.|||
T Consensus 80 VitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsNPvDv~t~v~----~~~sg~~~~~vig~gt~LDs 155 (324)
T TIGR01758 80 ILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGNPANTNALVL----SNYAPSIPPKNFSALTRLDH 155 (324)
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCcceEEEeeehHH
Confidence 999999999999999999999999999999999996 9999999999999999765 66777777889999 89999
Q ss_pred HHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCC-C----C----CCHHH--HHHHHHHHHhhHHHHHhhhc
Q 023671 192 VRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP-C----S----FTQEE--TEYLTNRIQNGGTEVVEAKA 259 (279)
Q Consensus 192 ~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~-~----~----~~~~~--~~~i~~~v~~~~~~i~~~k~ 259 (279)
+|||++||++++++|++|+ ++||||||+ +++|+||+++++ + + +++++ +++|.++++++|++|+++|
T Consensus 156 ~R~r~~la~~l~v~~~~V~~~~V~GeHG~-s~v~~~S~~~v~~g~~~~pl~~~~~~~~~~~~~i~~~v~~~g~~Ii~~k- 233 (324)
T TIGR01758 156 NRALAQVAERAGVPVSDVKNVIIWGNHSS-TQYPDVNHATVTKGGKQKPVREAIKDDAYLDGEFITTVQQRGAAIIRAR- 233 (324)
T ss_pred HHHHHHHHHHhCCChhhceEeEEEECCCC-CcccccccceecCCCCccCHHHHhcchhhHHHHHHHHHHhCHHHHHhcc-
Confidence 9999999999999999996 699999999 999999999997 5 2 22222 5789999999999999975
Q ss_pred CCCcchHHHHHHHHHHHh
Q 023671 260 GAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 260 g~gs~~~s~A~a~~~~~~ 277 (279)
++++.|++|.+++++++
T Consensus 234 -~~~t~~~ia~~~~~i~~ 250 (324)
T TIGR01758 234 -KLSSALSAAKAAVDQMH 250 (324)
T ss_pred -CCCHHHHHHHHHHHHHH
Confidence 36899999999999986
No 26
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=5.4e-47 Score=349.74 Aligned_cols=224 Identities=30% Similarity=0.468 Sum_probs=201.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC-CeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG-AVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~-~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|||+|||+ |.||+++++.|+.++++.+|+|+|+++ +.+.++|+.|.... ...... ++| ++++++||+||++++
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~--~~d-~~~l~~aDiViita~ 76 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIY--AGD-YADCKGADVVVITAG 76 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEe--eCC-HHHhCCCCEEEEccC
Confidence 59999999 999999999999999889999999987 67899999987531 223333 346 478999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHH
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTF 197 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~ 197 (279)
.+++++++|.|++..|+++++++++.|++++|+++++++|||+|+||+++ ++.+|+|++||||+ |.|||+|++++
T Consensus 77 ~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~----~~~sg~p~~~viG~gt~LDs~R~~~~ 152 (308)
T cd05292 77 ANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVA----YKLSGLPPNRVIGSGTVLDTARFRYL 152 (308)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHHCcCHHHeecccchhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 66789999999999 89999999999
Q ss_pred HHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC------------CCCHHHHHHHHHHHHhhHHHHHhhhcCCCcch
Q 023671 198 VAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC------------SFTQEETEYLTNRIQNGGTEVVEAKAGAGSAT 265 (279)
Q Consensus 198 la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~------------~~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~ 265 (279)
+|+++++++++|+++|+||||+ +++|+||++++++ .++++++++|.++++++|++|++.| |+|+
T Consensus 153 la~~~~v~~~~v~~~viGeHg~-~~~~~~S~~~v~g~~~~~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii~~k---g~t~ 228 (308)
T cd05292 153 LGEHLGVDPRSVHAYIIGEHGD-SEVAVWSSANIGGVPLDEFCKLCGRPFDEEVREEIFEEVRNAAYEIIERK---GATY 228 (308)
T ss_pred HHHHhCCCccceeceeeccCCC-cEEecceeeeECCEEHHHHhhhcccccCHHHHHHHHHHHHHHHHHHHHcC---CccH
Confidence 9999999999999999999998 9999999999864 1333558899999999999999954 7899
Q ss_pred HHHHHHHHHHHh
Q 023671 266 LSMRLNLRMHAS 277 (279)
Q Consensus 266 ~s~A~a~~~~~~ 277 (279)
|++|.+++++++
T Consensus 229 ~~~a~a~~~i~~ 240 (308)
T cd05292 229 YAIGLALARIVE 240 (308)
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
No 27
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=3.3e-46 Score=346.60 Aligned_cols=227 Identities=26% Similarity=0.371 Sum_probs=197.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCCC----chhHHhhhhcccC--CCeEEEEeCCCCHHhhhC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVVN----TPGVTADISHMDT--GAVVRGFLGQPQLENALT 108 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~~----~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~ 108 (279)
++.||+||||+|+||+++++.|+.+++++ ||+|+|+++ +.+.++|+.|... ..++.. ..+++++++
T Consensus 1 ~~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~---~~~~~~~l~ 77 (325)
T cd01336 1 EPIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVA---TTDPEEAFK 77 (325)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCcee---cCCHHHHhC
Confidence 36799999999999999999999988775 999999954 5788899999752 123322 346779999
Q ss_pred CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHh-CCCCCCCeeee
Q 023671 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKA-GTYDPKKLLGV 186 (279)
Q Consensus 109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~-~~~~~~kViG~ 186 (279)
|||+||++||.+++++++|.+++..|+++++++++.|++++ |++++|++|||+|+||+++ ++. +++|+++ ||+
T Consensus 78 ~aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~----~k~~~~~~~~~-ig~ 152 (325)
T cd01336 78 DVDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPANTNALIL----LKYAPSIPKEN-FTA 152 (325)
T ss_pred CCCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcHHHHHHHH----HHHcCCCCHHH-EEe
Confidence 99999999999999999999999999999999999999997 7999999999999999865 555 5777777 888
Q ss_pred -cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCC----C-C----CCHHH--HHHHHHHHHhhHHH
Q 023671 187 -TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPP----C-S----FTQEE--TEYLTNRIQNGGTE 253 (279)
Q Consensus 187 -t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~----~-~----~~~~~--~~~i~~~v~~~~~~ 253 (279)
|.||++||++++|++++++|++|+ .+||||||+ +++|+||+++++ + + +++++ +++|.++++++|++
T Consensus 153 gt~LDs~R~r~~la~~l~v~~~~v~~~~V~GeHG~-s~~~~~S~~~v~~~~~g~~~~~~~~~~~~~~~~i~~~v~~~g~~ 231 (325)
T cd01336 153 LTRLDHNRAKSQIALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVELNGKGKPAREAVKDDAWLNGEFISTVQKRGAA 231 (325)
T ss_pred eehHHHHHHHHHHHHHhCcChhhceEeEEEEcCCC-CeeeccccceeecCCCCccHHHHhcccchhHHHHHHHHHhhHHH
Confidence 899999999999999999999997 459999999 999999999987 4 2 22322 58999999999999
Q ss_pred HHhhhcCCCcchHHHHHHHHHHHh
Q 023671 254 VVEAKAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 254 i~~~k~g~gs~~~s~A~a~~~~~~ 277 (279)
|+++| +|+++|++|.+++++++
T Consensus 232 Ii~~~--~g~t~~~~a~~~~~i~~ 253 (325)
T cd01336 232 VIKAR--KLSSAMSAAKAICDHVH 253 (325)
T ss_pred HHHcc--ccchHHHHHHHHHHHHH
Confidence 99974 57999999999999886
No 28
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=100.00 E-value=1.3e-45 Score=340.63 Aligned_cols=226 Identities=27% Similarity=0.426 Sum_probs=199.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~----~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIi 115 (279)
|||+|+||+|.+|++++..|+..++..+|+|+|+++ +++.++|+.|.... ...+.. .++| ++++++||+||+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~-~~~d-~~~l~~aDiVii 78 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIK-ISSD-LSDVAGSDIVII 78 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEE-ECCC-HHHhCCCCEEEE
Confidence 699999988999999999999999989999999954 57888999986321 122322 2346 467999999999
Q ss_pred ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHH
Q 023671 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRA 194 (279)
Q Consensus 116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~ 194 (279)
++|.|+++|++|.|++..|+++++++++.|.+++|++++|+++||+|++|+++ ++.+++|++||||+ |.|||+|+
T Consensus 79 tag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~----~~~~g~~~~~viG~gt~LDs~R~ 154 (309)
T cd05294 79 TAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKA----LKESGFDKNRVFGLGTHLDSLRF 154 (309)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHH----HHhcCCCHHHEeeccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999765 67789999999999 68999999
Q ss_pred HHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----C--CHHHHHHHHHHHHhhHHHHHhhhcCCCcchHH
Q 023671 195 NTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----F--TQEETEYLTNRIQNGGTEVVEAKAGAGSATLS 267 (279)
Q Consensus 195 ~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~--~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s 267 (279)
+++||+++++++++|+++|+||||+ +++|+||++++++ + + .+.++++|.++++++|++|++.| |+++|+
T Consensus 155 ~~~la~~l~v~~~~v~~~viGeHg~-s~~~~~S~~~i~g~~~~~~~~~~~~~~~~i~~~v~~~g~~i~~~k---g~t~~~ 230 (309)
T cd05294 155 KVAIAKHFNVHISEVHTRIIGEHGD-SMVPLISSTSIGGIPIKRFPEYKDFDVEKIVETVKNAGQNIISLK---GGSEYG 230 (309)
T ss_pred HHHHHHHHCcChHHeEEEEEecCCC-ceEeeeeecEECCEEHHHhhcccHHHHHHHHHHHHHHHHHHHHhc---CCchhh
Confidence 9999999999999999999999999 9999999999865 1 1 24457899999999999999965 567899
Q ss_pred HHHHHHHHHh
Q 023671 268 MRLNLRMHAS 277 (279)
Q Consensus 268 ~A~a~~~~~~ 277 (279)
+|.+++++++
T Consensus 231 ~a~~~~~ii~ 240 (309)
T cd05294 231 PASAISNLVR 240 (309)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 29
>PRK06223 malate dehydrogenase; Reviewed
Probab=100.00 E-value=4.3e-45 Score=336.43 Aligned_cols=227 Identities=33% Similarity=0.570 Sum_probs=201.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCC--CeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTG--AVVRGFLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~--~~v~~~~~~~d~~eal~~ADiVIit 116 (279)
|+||+|||| |+||+++++.++..++. ||+|+|+++ +++.++|+.|.... ...+. ..++|+ +++++||+||++
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i-~~~~d~-~~~~~aDiVii~ 77 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKI-TGTNDY-EDIAGSDVVVIT 77 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhhhhhcCCCcEE-EeCCCH-HHHCCCCEEEEC
Confidence 469999999 99999999999999987 999999987 67888888886421 12222 224565 789999999999
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHH
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRAN 195 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~ 195 (279)
+|.|+++|++|.|++.+|++++++++++|++++|++++|++|||+|++|+++ ++.+++|++||||+ |.||++||+
T Consensus 78 ~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~d~~~~~~----~~~s~~~~~~viG~gt~lds~r~~ 153 (307)
T PRK06223 78 AGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPVDAMTYVA----LKESGFPKNRVIGMAGVLDSARFR 153 (307)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCcccEEEeCCCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999765 66789999999999 589999999
Q ss_pred HHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHH
Q 023671 196 TFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRL 270 (279)
Q Consensus 196 ~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~ 270 (279)
++||++++++|++|+++|+||||+ +++|+||++++++ + ++++.+++|.+++++++++|++.+ +|+++.|++|.
T Consensus 154 ~~la~~l~v~~~~v~~~viGehg~-s~~p~~S~~~v~g~~~~~~~~~~~~~~l~~~v~~~~~~ii~~~-~kg~t~~~~A~ 231 (307)
T PRK06223 154 TFIAEELNVSVKDVTAFVLGGHGD-SMVPLVRYSTVGGIPLEDLLSKEKLDEIVERTRKGGAEIVGLL-KTGSAYYAPAA 231 (307)
T ss_pred HHHHHHhCcChhhCcccEEcCCCC-cceEchhhCEECCEEHHHhCChHHHHHHHHHHHHHHHHHHhhc-ccCChhHHHHH
Confidence 999999999999999999999999 9999999999864 2 455567999999999999999974 67899999999
Q ss_pred HHHHHHh
Q 023671 271 NLRMHAS 277 (279)
Q Consensus 271 a~~~~~~ 277 (279)
+++++++
T Consensus 232 ~~~~ii~ 238 (307)
T PRK06223 232 SIAEMVE 238 (307)
T ss_pred HHHHHHH
Confidence 9998875
No 30
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=100.00 E-value=2.8e-45 Score=337.06 Aligned_cols=224 Identities=36% Similarity=0.591 Sum_probs=199.5
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
|+|||| |.||+++++.++..++. +|+|+|+++ +.+.++|+.|... ....+.. .++| +++++|||+||+++|.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~-eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~-~t~d-~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG-DVVLLDIVEGLPQGKALDISQAAPILGSDTKVT-GTND-YEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc-EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEE-EcCC-HHHhCCCCEEEEecCC
Confidence 689999 99999999999999988 999999988 5677888888642 1222322 2356 4789999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeec-chhHHHHHHHH
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVT-MLDVVRANTFV 198 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t-~lds~R~~~~l 198 (279)
|+++|++|.+++.+|++++++++++|++++|++++|++|||+|++|+++ ++.+++|++||||+| .||++||++++
T Consensus 77 p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~----~~~s~~~~~rviGlgt~lds~r~~~~l 152 (300)
T cd01339 77 PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVA----YKASGFPRNRVIGMAGVLDSARFRYFI 152 (300)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCHHHEEEecchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999765 667899999999995 89999999999
Q ss_pred HHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-C----CCHHHHHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHH
Q 023671 199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-S----FTQEETEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLR 273 (279)
Q Consensus 199 a~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-~----~~~~~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~ 273 (279)
|++|+++|++|+++|+||||+ +++|+||++++++ + ++++++++|.+++++++++|++.| |+|+++|++|.+++
T Consensus 153 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~v~g~~~~~~~~~~~~~~~~~~v~~~~~~ii~~k-~~g~t~~~~a~~~~ 230 (300)
T cd01339 153 AEELGVSVKDVQAMVLGGHGD-TMVPLPRYSTVGGIPLTELITKEEIDEIVERTRNGGAEIVNLL-KTGSAYYAPAAAIA 230 (300)
T ss_pred HHHhCCCccceEEEEEeCCCC-cceecceecEECCEEHHHhcChHHHHHHHHHHHHHHHHHHhhc-CCCchhHHHHHHHH
Confidence 999999999999999999998 9999999999964 2 455568999999999999999988 78999999999999
Q ss_pred HHHh
Q 023671 274 MHAS 277 (279)
Q Consensus 274 ~~~~ 277 (279)
++++
T Consensus 231 ~i~~ 234 (300)
T cd01339 231 EMVE 234 (300)
T ss_pred HHHH
Confidence 9976
No 31
>PLN00135 malate dehydrogenase
Probab=100.00 E-value=5e-44 Score=329.14 Aligned_cols=199 Identities=25% Similarity=0.379 Sum_probs=176.3
Q ss_pred EEEEEeCCC----chhHHhhhhcccC-C-CeEEEEeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHH
Q 023671 69 VLHLYDVVN----TPGVTADISHMDT-G-AVVRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLC 142 (279)
Q Consensus 69 ev~L~D~~~----~~g~~~DL~~~~~-~-~~v~~~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~ 142 (279)
.|+|+|+++ ++|+++||.|... . ..+.. +++.+++++|||+||+|||.|+++|++|.|++..|++++++++
T Consensus 15 ~l~L~D~~~~~~~a~g~~~Dl~da~~~~~~~i~~---~~~~y~~~~daDiVVitAG~~~k~g~sR~dll~~N~~I~~~i~ 91 (309)
T PLN00135 15 ILHMLDIPPAAEALNGVKMELIDAAFPLLKGVVA---TTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQA 91 (309)
T ss_pred EEEEecCcccccchhhHHHHHHhhhHHhcCCcEe---cCCHHHHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 899999976 6899999999862 2 22322 2354689999999999999999999999999999999999999
Q ss_pred HHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHHHHHHcCCCCCCC-cceeecCCCC
Q 023671 143 EGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAG 219 (279)
Q Consensus 143 ~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~la~~l~v~~~~V-~~~ViGehg~ 219 (279)
++|+++ +|++++|++|||+|+||+++ ++.+++|++|+||+ |.|||+|||++||++++++|++| +++||||||+
T Consensus 92 ~~i~~~~~p~aivivvsNPvDv~t~~~----~~~sg~~~~~vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~VlGeHG~ 167 (309)
T PLN00135 92 SALEKHAAPDCKVLVVANPANTNALIL----KEFAPSIPEKNITCLTRLDHNRALGQISERLGVPVSDVKNVIIWGNHSS 167 (309)
T ss_pred HHHHHhcCCCeEEEEeCCcHHHHHHHH----HHHcCCCCccEEEeeehHHHHHHHHHHHHHhCcChhhceeeEEEEcCCC
Confidence 999996 89999999999999999765 67789999999999 89999999999999999999999 6999999999
Q ss_pred ceeeeecccCCC----CC-C----CCHHH--HHHHHHHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671 220 VTILPLLSQVKP----PC-S----FTQEE--TEYLTNRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 220 ~~~vp~~S~~~v----~~-~----~~~~~--~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~ 277 (279)
+++|+||++++ ++ + +.+++ +++|.++++++|++|+++| ||+|+||+|.+++++++
T Consensus 168 -s~v~~~S~a~v~~~~~g~p~~e~~~~~~~~~~~i~~~v~~~g~~Ii~~~--kg~t~~~ia~a~~~iv~ 233 (309)
T PLN00135 168 -TQYPDVNHATVKTPSGEKPVRELVADDAWLNGEFITTVQQRGAAIIKAR--KLSSALSAASSACDHIR 233 (309)
T ss_pred -ceeeccccceEecCCCCcCHHHHhCchhhHHHHHHHHHHHHHHHHHHcc--CccHHHHHHHHHHHHHH
Confidence 99999999999 54 2 23334 5789999999999999974 67999999999999986
No 32
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=100.00 E-value=4.3e-44 Score=341.86 Aligned_cols=225 Identities=15% Similarity=0.133 Sum_probs=193.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCc-----EEEEEeCC--C--chhHHhhhhcccC-C-CeEEEEeCCCCHHhhh
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS-----VLHLYDVV--N--TPGVTADISHMDT-G-AVVRGFLGQPQLENAL 107 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~-----ev~L~D~~--~--~~g~~~DL~~~~~-~-~~v~~~~~~~d~~eal 107 (279)
.++.+|+|+||+|++|+++.+.++...++. .|+|+|++ + ++|+++||.|+.. . ..+... +++ ++++
T Consensus 121 ~~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~--~~~-~ea~ 197 (452)
T cd05295 121 INPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT--TDL-DVAF 197 (452)
T ss_pred CCceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE--ECC-HHHh
Confidence 356799999999999999999999865432 69999994 3 7899999999862 1 234433 234 6999
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC--CceEEEecCCCCchHHHHHHHHHHhC-CCCCCCee
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP--NATVNLISNPVNSTVPIAAEVFKKAG-TYDPKKLL 184 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p--~a~viv~TNPvd~~t~~~~~~~~~~~-~~~~~kVi 184 (279)
+|||+||+++|.|+++|++|.|++..|++|+++++++|.+++| ++++|++|||+|++|+++ ++.+ ++|++||+
T Consensus 198 ~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~tNPvD~~t~i~----~k~apgiP~~rVi 273 (452)
T cd05295 198 KDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGRTFLNLKTSIL----IKYAPSIPRKNII 273 (452)
T ss_pred CCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeCCcHHHHHHHH----HHHcCCCCHHHEE
Confidence 9999999999999999999999999999999999999999999 899999999999999876 4555 99999999
Q ss_pred eecchhHHHHHHHHHHHcCCCCCCC-cceeecCCCCceeeeecccCCCCC-------------C----CCHHH--HHHHH
Q 023671 185 GVTMLDVVRANTFVAEVLGLDPRDV-DVPVVGGHAGVTILPLLSQVKPPC-------------S----FTQEE--TEYLT 244 (279)
Q Consensus 185 G~t~lds~R~~~~la~~l~v~~~~V-~~~ViGehg~~~~vp~~S~~~v~~-------------~----~~~~~--~~~i~ 244 (279)
|++.||++|++++||+++|+++++| +++||||||+ ++||+||++++++ + +++++ .+++.
T Consensus 274 g~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG~-sqvpd~S~a~V~G~~~a~~~p~~~~~pl~e~i~d~~w~~~~~~ 352 (452)
T cd05295 274 AVARLQENRAKALLARKLNVNSAGIKDVIVWGNIGG-NTYIDLSKARVYRYDSAIWGPPNYSRPVLELVHDSKWINGEFV 352 (452)
T ss_pred EecchHHHHHHHHHHHHhCcCHHHceeeEEEEccCC-ceeeeeeEEEEcccccccccccccCccHHHHhcchhhhHHHHH
Confidence 9977889999999999999999999 5799999999 9999999999854 1 23334 36788
Q ss_pred HHHHhhHHHHHhhhcCCCcchHHHHHHHHHHHh
Q 023671 245 NRIQNGGTEVVEAKAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 245 ~~v~~~~~~i~~~k~g~gs~~~s~A~a~~~~~~ 277 (279)
+.|+++++ + +|||+++|+|.|++++++
T Consensus 353 ~~v~~rg~---~---rkgsT~~siA~A~~~iv~ 379 (452)
T cd05295 353 ATLKSLSS---S---LNHEAAISPAHAIATTLS 379 (452)
T ss_pred HHHHHHHH---h---ccCChHHHHHHHHHHHHH
Confidence 89999998 3 568999999999999986
No 33
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=100.00 E-value=2.7e-42 Score=318.26 Aligned_cols=202 Identities=22% Similarity=0.274 Sum_probs=174.4
Q ss_pred hCCCCcEEEEEeCCC----chhHHhhhhcccCCCe--EEEEeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHH
Q 023671 63 INPLVSVLHLYDVVN----TPGVTADISHMDTGAV--VRGFLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAG 136 (279)
Q Consensus 63 ~~~~~~ev~L~D~~~----~~g~~~DL~~~~~~~~--v~~~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~ 136 (279)
.+++ .|+|+|+++ ++|+++||.|+. .+. .... ++|++++++|||+||+|||.|+++|++|.|++..|++
T Consensus 13 ~~~~--~l~L~D~~~~~~~a~g~a~Dl~d~~-~~~~~~~i~--~~~~~~~~~daDiVVitaG~~~k~g~tR~dll~~N~~ 87 (313)
T TIGR01756 13 NRPV--CLHLLEIPPALNRLEALAMELEDCA-FPNLAGTIV--TTKLEEAFKDIDCAFLVASVPLKPGEVRADLLTKNTP 87 (313)
T ss_pred CCeE--EEEEecCCCccchhHhHHHHHHHhc-cccCCceEe--cCCHHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHH
Confidence 3445 899999977 689999999997 332 2222 3577789999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCC-ceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee-cchhHHHHHHHHHHHcCCCCCCCcce-e
Q 023671 137 IVRTLCEGIAKCCPN-ATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV-TMLDVVRANTFVAEVLGLDPRDVDVP-V 213 (279)
Q Consensus 137 i~~~i~~~I~~~~p~-a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~-t~lds~R~~~~la~~l~v~~~~V~~~-V 213 (279)
++++++++|++++|+ +++|++|||+|+||+++. ++.+++|++ +||+ |.|||+|||++||++++++|++|+.+ |
T Consensus 88 I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~---~~~sg~p~~-vig~gt~LDsaR~r~~la~~l~v~~~~V~~~~V 163 (313)
T TIGR01756 88 IFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAM---LHAPKLSAE-NFSSLCMLDHNRAVSRIASKLKVPVDHIYHVVV 163 (313)
T ss_pred HHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHH---HHcCCCCHH-HEEecccHHHHHHHHHHHHHhCcChhheeeeEE
Confidence 999999999999955 789999999999997652 578999998 9999 89999999999999999999999755 9
Q ss_pred ecCCCCceeeeecccCCC--CC-C------CCHH-HHHHHHHHHHhhHHHHHhhhcCCCcchHHHH-HHHHHHHh
Q 023671 214 VGGHAGVTILPLLSQVKP--PC-S------FTQE-ETEYLTNRIQNGGTEVVEAKAGAGSATLSMR-LNLRMHAS 277 (279)
Q Consensus 214 iGehg~~~~vp~~S~~~v--~~-~------~~~~-~~~~i~~~v~~~~~~i~~~k~g~gs~~~s~A-~a~~~~~~ 277 (279)
|||||+ +++|+||++++ ++ + ++++ .+++|.++++++|++|+++ ||+|+|+++ .+++++++
T Consensus 164 ~GeHG~-s~vp~~S~~~V~~~G~~~~~~~~~~~~~~~~~i~~~v~~~g~~Ii~~---kg~t~~~~~a~ai~~iv~ 234 (313)
T TIGR01756 164 WGNHAE-SMVADLTHAEFTKNGKHQKVFDELCRDYPEPDFFEVIAQRAWKILEM---RGFTSAASPVKASLQHMK 234 (313)
T ss_pred EECCCC-ceeecccccEEecCCeehhHhhhcCcHhHHHHHHHHHHHHHHHHHhC---cCCcchHHHHHHHHHHHH
Confidence 999999 99999999999 54 1 2332 3679999999999999995 578999988 59999886
No 34
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=100.00 E-value=7.4e-40 Score=295.77 Aligned_cols=181 Identities=34% Similarity=0.516 Sum_probs=164.4
Q ss_pred EEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCC--chhHHhhhhcccCCC-eEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 44 VAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVN--TPGVTADISHMDTGA-VVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~--~~~ev~L~D~~~--~~g~~~DL~~~~~~~-~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|+||||+|.+|+++++.|+..+ ...||+|+|+++ +++.++|+.|..... ..+.. .++|++++++|||+||+++|
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~-~~~d~~~~~~~aDiVv~t~~ 79 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS-ITDDPYEAFKDADVVIITAG 79 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE-ECCchHHHhCCCCEEEECCC
Confidence 6899998999999999999999 778999999987 688999999986432 23333 25677899999999999999
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHH
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFV 198 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~l 198 (279)
.++++|++|.+++.+|++++++++++|+++||++|+|++|||+|++|+++ ++.+|+|++||||+|.+|+.|+++++
T Consensus 80 ~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~----~~~sg~~~~kviG~~~ld~~r~~~~l 155 (263)
T cd00650 80 VGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLV----WRYSGLPKEKVIGLGTLDPIRFRRIL 155 (263)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----HHHhCCCchhEEEeecchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999765 66779999999999559999999999
Q ss_pred HHHcCCCCCCCcceeecCCCCceeeeecccCC
Q 023671 199 AEVLGLDPRDVDVPVVGGHAGVTILPLLSQVK 230 (279)
Q Consensus 199 a~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~ 230 (279)
|+++++++++|+++|||+||+ +++|+||+++
T Consensus 156 a~~l~v~~~~v~~~v~G~hg~-~~~~~~s~~~ 186 (263)
T cd00650 156 AEKLGVDPDDVKVYILGEHGG-SQVPDWSTVR 186 (263)
T ss_pred HHHhCCCccceEEEEEEcCCC-ceEeccccch
Confidence 999999999999999999999 8999999876
No 35
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=100.00 E-value=5e-34 Score=235.27 Aligned_cols=139 Identities=39% Similarity=0.613 Sum_probs=123.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
|||+||||+|.||+++++.|+++++++||+|+|+++ ++|+++||+|..............+ +++++|||+||+|+|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~-~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGD-YEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESS-GGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhccccccccccc-ccccccccEEEEeccc
Confidence 699999999999999999999999999999999997 7999999999864332222222234 6899999999999999
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG 185 (279)
++++|++|.|++..|++++++++++|.+++|+++++++|||+|+||+++ ++.+++|++|+||
T Consensus 80 ~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~~t~~~----~~~s~~~~~kviG 141 (141)
T PF00056_consen 80 PRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDVMTYVA----QKYSGFPPNKVIG 141 (141)
T ss_dssp SSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHHHHHHH----HHHHTSSGGGEEE
T ss_pred cccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHHHHHHH----HHhhCcCcccCcC
Confidence 9999999999999999999999999999999999999999999998654 7788999999998
No 36
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=100.00 E-value=2.3e-33 Score=244.26 Aligned_cols=231 Identities=26% Similarity=0.380 Sum_probs=202.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCC----chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLGQPQLENALTGM 110 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~-----~~ev~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A 110 (279)
++.+|.|+||+|++|+++++.++.... .-.++|+|+.+ ++|..++|+++. .+.++....++|..++++|.
T Consensus 3 epirVlVtGAAGqI~ysll~~ia~G~vfG~dQPiiL~lLdi~~~~~~LegV~mELqD~a-~PlL~~Vvattd~~~afkdv 81 (332)
T KOG1496|consen 3 EPIRVLVTGAAGQIGYSLLPMIARGIVFGKDQPIILHLLDIPPMMSVLEGVKMELQDCA-LPLLKGVVATTDEVEAFKDV 81 (332)
T ss_pred CceEEEeecccchhhHHHHHHHcCceeecCCCceEEEeeCCchHHHHHHHHHHHHHhhh-hhHHHhhhcccChhhhhccC
Confidence 467999999999999999999886421 23899999987 589999999986 56555544456778999999
Q ss_pred CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecch
Q 023671 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTML 189 (279)
Q Consensus 111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~l 189 (279)
|+.|...+.||++||+|.|++..|++|++.-+..+++++ |+.+++++.||+|..+-++. +++..+|.+++-.+|.|
T Consensus 82 ~~ailvGa~PR~eGMERkDll~~NvkIfk~Qg~AL~k~A~~~~KVlVVgNPaNTNali~~---k~ApsIP~kNfs~lTRL 158 (332)
T KOG1496|consen 82 DVAILVGAMPRREGMERKDLLSANVKIFKSQGAALEKYAKPNVKVLVVGNPANTNALILK---KFAPSIPEKNFSALTRL 158 (332)
T ss_pred cEEEEeccccCcccchhhhHHhhcceeehhhhHHHHHhcCCCceEEEecCccccchhHHh---hhCCCCchhcchhhhhh
Confidence 999999999999999999999999999999999999998 89999999999999887664 56788999999999999
Q ss_pred hHHHHHHHHHHHcCCCCCCCc-ceeecCCCCceeeeecccCCCCC---------CCCHHHH--HHHHHHHHhhHHHHHhh
Q 023671 190 DVVRANTFVAEVLGLDPRDVD-VPVVGGHAGVTILPLLSQVKPPC---------SFTQEET--EYLTNRIQNGGTEVVEA 257 (279)
Q Consensus 190 ds~R~~~~la~~l~v~~~~V~-~~ViGehg~~~~vp~~S~~~v~~---------~~~~~~~--~~i~~~v~~~~~~i~~~ 257 (279)
|.+|+..+||.++|+..++|. ..+||+|+. ||+|+.-|++++. .+.+..| .++.+.|+++|..+|+.
T Consensus 159 DhNRA~~QlA~klgv~~~~VkNviIWGNHSs-TQyPD~~hA~V~~~~~~~~v~e~v~d~~wL~g~Fi~tVQkRGaavi~a 237 (332)
T KOG1496|consen 159 DHNRALAQLALKLGVPVSDVKNVIIWGNHSS-TQYPDVNHATVNTNGGEKPVKEAVKDDAWLQGEFIETVQKRGAAVIKA 237 (332)
T ss_pred chhhHHHHHHHhhCCchhhcceeEEeccccc-ccCCCccceeeeccCCcccHHHHhccchhhccchhhHHHhcchHhhhh
Confidence 999999999999999999996 889999998 9999999999952 1455566 68999999999999996
Q ss_pred hcCCCcchHHHHHHHHHHHh
Q 023671 258 KAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 258 k~g~gs~~~s~A~a~~~~~~ 277 (279)
+ |.|+.+|.|.|++++++
T Consensus 238 r--k~SSA~SaA~aacDhi~ 255 (332)
T KOG1496|consen 238 R--KLSSAMSAAKAACDHIR 255 (332)
T ss_pred h--hhhhhhhHHHhHhhhhh
Confidence 4 67899999999999985
No 37
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=99.93 E-value=5.9e-26 Score=217.58 Aligned_cols=177 Identities=24% Similarity=0.250 Sum_probs=133.8
Q ss_pred cEEEEEcCCCchHH-HHHHHHHhCC--C-CcEEEEEeCCC--c---hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCE
Q 023671 42 FKVAILGAAGGIGQ-PLAMLMKINP--L-VSVLHLYDVVN--T---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDL 112 (279)
Q Consensus 42 ~KI~IIGA~G~VG~-~la~~L~~~~--~-~~ev~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADi 112 (279)
+||+|||| |+.=. .+...|+... + .+||+|+|+++ + ...+..+.+.. ...++... |+|+++|++|||+
T Consensus 1 ~KI~iIGg-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~-g~~~~v~~-ttD~~~Al~gADf 77 (425)
T cd05197 1 VKIAIIGG-GSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEV-GADIKFEK-TMDLEDAIIDADF 77 (425)
T ss_pred CEEEEECC-chHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCCE
Confidence 59999999 66411 2233444433 2 58999999998 2 12233333332 23444433 5789999999999
Q ss_pred EEEccCCC------------CCCCCc--------hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHH
Q 023671 113 VIIPAGVP------------RKPGMT--------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF 172 (279)
Q Consensus 113 VIitag~~------------~k~g~~--------r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~ 172 (279)
||.+..+. .+.|.. ..-...+|+++++++++.|+++||++|+|++|||+|+||+.+
T Consensus 78 Vi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~di~t~a~---- 153 (425)
T cd05197 78 VINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPAGEVTEAV---- 153 (425)
T ss_pred EEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHH----
Confidence 99986432 233221 223467899999999999999999999999999999999765
Q ss_pred HHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeec-CCCCceeeeecccCCCCC
Q 023671 173 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAGVTILPLLSQVKPPC 233 (279)
Q Consensus 173 ~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViG-ehg~~~~vp~~S~~~v~~ 233 (279)
++. +|+.||||+|.. +.|+++.+|+.+|+++++|+++++| +|| |+||++++++
T Consensus 154 ~~~--~p~~rviG~c~~-~~r~~~~ia~~lgv~~~~v~~~v~GlnHg-----~~~s~~~~~G 207 (425)
T cd05197 154 RRY--VPPEKAVGLCNV-PIGVMEIVAKLLGESEEKVDWQYAGLNHG-----IWLNRVRYNG 207 (425)
T ss_pred HHh--CCCCcEEEECCC-HHHHHHHHHHHhCCCHHHeEEEEEeccCe-----EeeEeEEECC
Confidence 554 378999999877 9999999999999999999999999 998 7899998854
No 38
>PRK15076 alpha-galactosidase; Provisional
Probab=99.93 E-value=1.1e-25 Score=216.25 Aligned_cols=166 Identities=20% Similarity=0.259 Sum_probs=131.1
Q ss_pred CcEEEEEcCCCchHHHHHH--HHH-hCCCC-cEEEEEeCCC--ch-hHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCC
Q 023671 41 GFKVAILGAAGGIGQPLAM--LMK-INPLV-SVLHLYDVVN--TP-GVTADISHMDT--GAVVRGFLGQPQLENALTGMD 111 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~--~L~-~~~~~-~ev~L~D~~~--~~-g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~AD 111 (279)
++||+|||| |++|.+.++ .++ ..++. .||+|+|+++ ++ +... +.+... ....+.. .++|++++++|||
T Consensus 1 ~~KIaIIGa-Gsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l-~~~~~~~~~~~~~i~-~ttD~~eal~dAD 77 (431)
T PRK15076 1 MPKITFIGA-GSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV-ARKLAESLGASAKIT-ATTDRREALQGAD 77 (431)
T ss_pred CcEEEEECC-CHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH-HHHHHHhcCCCeEEE-EECCHHHHhCCCC
Confidence 369999999 999998877 555 34554 4999999987 33 3333 333321 2223332 2568889999999
Q ss_pred EEEEccCCC-CCCC--------------CchhhH--------HHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHH
Q 023671 112 LVIIPAGVP-RKPG--------------MTRDDL--------FNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIA 168 (279)
Q Consensus 112 iVIitag~~-~k~g--------------~~r~d~--------~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~ 168 (279)
+||++++++ .+++ ++|.|. +.+|++++++++++|+++||++|+|++|||+|++|+.+
T Consensus 78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~ 157 (431)
T PRK15076 78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM 157 (431)
T ss_pred EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence 999999987 4444 456677 89999999999999999999999999999999999654
Q ss_pred HHHHHHhCCCCCCCeeeec--chhHHHHHHHHHHHcCCCCCCCcceeecCCCC
Q 023671 169 AEVFKKAGTYDPKKLLGVT--MLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 219 (279)
Q Consensus 169 ~~~~~~~~~~~~~kViG~t--~lds~R~~~~la~~l~v~~~~V~~~ViGehg~ 219 (279)
+ ++|+.||||+| .+|+. +.+|+.+|+++++|++++.|-+|-
T Consensus 158 ----~---~~~~~rviG~c~~~~~~~---~~ia~~l~v~~~~v~~~~~GlNH~ 200 (431)
T PRK15076 158 ----N---RYPGIKTVGLCHSVQGTA---EQLARDLGVPPEELRYRCAGINHM 200 (431)
T ss_pred ----h---cCCCCCEEEECCCHHHHH---HHHHHHhCCCHHHeEEEEEeecch
Confidence 3 68889999997 47765 779999999999999999997664
No 39
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=99.92 E-value=1.3e-24 Score=208.06 Aligned_cols=167 Identities=21% Similarity=0.300 Sum_probs=127.8
Q ss_pred cEEEEEcCCCchHH-HHHHHHHhC-C--CCcEEEEEeCC-C--ch---hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCC
Q 023671 42 FKVAILGAAGGIGQ-PLAMLMKIN-P--LVSVLHLYDVV-N--TP---GVTADISHMDTGAVVRGFLGQPQLENALTGMD 111 (279)
Q Consensus 42 ~KI~IIGA~G~VG~-~la~~L~~~-~--~~~ev~L~D~~-~--~~---g~~~DL~~~~~~~~v~~~~~~~d~~eal~~AD 111 (279)
+||+|||| |++.. .+...|+.. . ..+||+|+|++ + +. ..+.++.... ...++... ++|+++|++|||
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~-~~~~~v~~-t~d~~~al~gad 77 (419)
T cd05296 1 MKLTIIGG-GSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKA-GLPIKVHL-TTDRREALEGAD 77 (419)
T ss_pred CEEEEECC-chHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhh-CCCeEEEE-eCCHHHHhCCCC
Confidence 59999999 76633 223344442 2 35899999999 5 21 1222333322 23344332 568999999999
Q ss_pred EEEEccCCCCCCCCchhh--------------------HHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHH
Q 023671 112 LVIIPAGVPRKPGMTRDD--------------------LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 171 (279)
Q Consensus 112 iVIitag~~~k~g~~r~d--------------------~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~ 171 (279)
+||+++++++.+++++.+ ...+|++++++++++|+++||++|+|++|||+|++|+.+
T Consensus 78 fVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~ivt~a~--- 154 (419)
T cd05296 78 FVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAGIVTEAV--- 154 (419)
T ss_pred EEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHH---
Confidence 999999887766655544 267899999999999999999999999999999998654
Q ss_pred HHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeec-CCCC
Q 023671 172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVG-GHAG 219 (279)
Q Consensus 172 ~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViG-ehg~ 219 (279)
++.+ +.||||+|.. +.|+++.+|+.+|+++++|+++|+| +|-.
T Consensus 155 -~k~~---~~rviGlc~~-~~r~~~~ia~~lg~~~~~v~~~v~GlNH~~ 198 (419)
T cd05296 155 -LRHT---GDRVIGLCNV-PIGLQRRIAELLGVDPEDVFIDYAGLNHLG 198 (419)
T ss_pred -HHhc---cCCEEeeCCc-HHHHHHHHHHHhCCCHHHceEEEEecccce
Confidence 5544 6899999987 4899999999999999999999999 7743
No 40
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.87 E-value=8.5e-22 Score=189.27 Aligned_cols=168 Identities=21% Similarity=0.205 Sum_probs=130.3
Q ss_pred cEEEEEcCCCchHHHHHH--HHHhC-CCC-cEEEEEeCCC--chhHHhhhhccc--CCCeEEEEeCCCCHHhhhCCCCEE
Q 023671 42 FKVAILGAAGGIGQPLAM--LMKIN-PLV-SVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENALTGMDLV 113 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~--~L~~~-~~~-~ev~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~~~d~~eal~~ADiV 113 (279)
+||+|||| |.+|++.+. .++.. .+. .+|+|+|+++ ++....++.+.. .....+.. .++|++++++|||+|
T Consensus 1 ~KIaIIGa-Gs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~-~ttD~~eal~~AD~V 78 (423)
T cd05297 1 IKIAFIGA-GSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIE-ATTDRREALDGADFV 78 (423)
T ss_pred CeEEEECC-ChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEE-EeCCHHHHhcCCCEE
Confidence 48999999 999999877 45433 332 4999999987 344444444332 11223322 256888999999999
Q ss_pred EEccCCCCCCCCch----------------------hhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHH
Q 023671 114 IIPAGVPRKPGMTR----------------------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 171 (279)
Q Consensus 114 Iitag~~~k~g~~r----------------------~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~ 171 (279)
|++++....++.++ .....+|++++.++++.++++||++|++++|||+++||+.+
T Consensus 79 i~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~--- 155 (423)
T cd05297 79 INTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWAL--- 155 (423)
T ss_pred EEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHH---
Confidence 99998665554443 34567899999999999999999999999999999999654
Q ss_pred HHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeecCCCC
Q 023671 172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 219 (279)
Q Consensus 172 ~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~ 219 (279)
++.++ .|+||+|+. +.++++.+|+.+++++++|+++++|-+|-
T Consensus 156 -~k~~~---~rviG~c~~-~~~~~~~~a~~l~~~~~~v~~~~~GlNH~ 198 (423)
T cd05297 156 -NRYTP---IKTVGLCHG-VQGTAEQLAKLLGEPPEEVDYQVAGINHM 198 (423)
T ss_pred -HHhCC---CCEEEECCc-HHHHHHHHHHHhCCCHHHeEEEEEeeccH
Confidence 55554 799999865 78899999999999999999999997664
No 41
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=99.85 E-value=7.8e-21 Score=182.71 Aligned_cols=168 Identities=20% Similarity=0.239 Sum_probs=123.6
Q ss_pred cEEEEEcCCCchHH-HHHHHHHhC--CC-CcEEEEEeCCC--c---hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCE
Q 023671 42 FKVAILGAAGGIGQ-PLAMLMKIN--PL-VSVLHLYDVVN--T---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDL 112 (279)
Q Consensus 42 ~KI~IIGA~G~VG~-~la~~L~~~--~~-~~ev~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADi 112 (279)
|||+|||| |++=+ .+...|++. .+ .+||+|+|+++ + ...+..+.... ...+++.. |+|+++|++|||+
T Consensus 1 ~KI~iIGa-GS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~-g~~~~v~~-Ttdr~eAl~gADf 77 (437)
T cd05298 1 FKIVIAGG-GSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKEN-YPEIKFVY-TTDPEEAFTDADF 77 (437)
T ss_pred CeEEEECC-cHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ECCHHHHhCCCCE
Confidence 69999999 66511 223344444 23 48999999998 2 12233333322 23444433 5789999999999
Q ss_pred EEEccCCC------------CCCCC---c-----hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHH
Q 023671 113 VIIPAGVP------------RKPGM---T-----RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVF 172 (279)
Q Consensus 113 VIitag~~------------~k~g~---~-----r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~ 172 (279)
||.+..+. .|+|. + ..-...+|+++++++++.|+++||+||+|++|||+|++|+.+
T Consensus 78 Vi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~---- 153 (437)
T cd05298 78 VFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEAL---- 153 (437)
T ss_pred EEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHH----
Confidence 99986432 23332 1 123568999999999999999999999999999999999654
Q ss_pred HHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceeecCCCC
Q 023671 173 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAG 219 (279)
Q Consensus 173 ~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~ 219 (279)
++. +|+.||||+|+-.. .++..+|+.||+++++++..+.|-+|-
T Consensus 154 ~~~--~~~~kviGlC~~~~-~~~~~la~~lg~~~~~v~~~~~GlNH~ 197 (437)
T cd05298 154 RRL--FPNARILNICDMPI-AIMDSMAAILGLDRKDLEPDYFGLNHF 197 (437)
T ss_pred HHH--CCCCCEEEECCcHH-HHHHHHHHHhCCCHHHceEEEEeecch
Confidence 443 78899999998644 378889999999999999999997664
No 42
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=99.82 E-value=2.4e-19 Score=153.24 Aligned_cols=152 Identities=22% Similarity=0.241 Sum_probs=103.6
Q ss_pred EEEEEcCCCchHHHHH--HHHHhCC-C-CcEEEEEeCCC--c---hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEE
Q 023671 43 KVAILGAAGGIGQPLA--MLMKINP-L-VSVLHLYDVVN--T---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLV 113 (279)
Q Consensus 43 KI~IIGA~G~VG~~la--~~L~~~~-~-~~ev~L~D~~~--~---~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiV 113 (279)
||+|||| |++-.+.. ..+...+ + .+||+|+|+|+ + ...+..+.... ..+++... ++|+++|++|||+|
T Consensus 1 KI~iIGa-GS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~-~~~~~v~~-ttd~~eAl~gADfV 77 (183)
T PF02056_consen 1 KITIIGA-GSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEA-GADLKVEA-TTDRREALEGADFV 77 (183)
T ss_dssp EEEEETT-TSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHC-TTSSEEEE-ESSHHHHHTTESEE
T ss_pred CEEEECC-chHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhc-CCCeEEEE-eCCHHHHhCCCCEE
Confidence 8999999 88877643 2444433 2 46999999998 1 12233333322 23344322 56899999999999
Q ss_pred EEccCC------------CCCCCCc----------hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHH
Q 023671 114 IIPAGV------------PRKPGMT----------RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEV 171 (279)
Q Consensus 114 Iitag~------------~~k~g~~----------r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~ 171 (279)
|.+..+ |.+.|.. -.....+++|.+.++++.|+++|||||++++|||+..+|..+
T Consensus 78 i~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~~~vt~a~--- 154 (183)
T PF02056_consen 78 INQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPMGIVTEAL--- 154 (183)
T ss_dssp EE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSHHHHHHHH---
T ss_pred EEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChHHHHHHHH---
Confidence 998653 4455422 123567899999999999999999999999999999988544
Q ss_pred HHHhCCCCCCCeeeecchhHHHHHHHHHHHcCC
Q 023671 172 FKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGL 204 (279)
Q Consensus 172 ~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v 204 (279)
.+. +|..|++|+|+... -+...+|+.||+
T Consensus 155 -~r~--~~~~k~vGlCh~~~-~~~~~la~~L~~ 183 (183)
T PF02056_consen 155 -SRY--TPKIKVVGLCHGPQ-GTRRQLAKLLGM 183 (183)
T ss_dssp -HHH--STTSEEEEE-SHHH-HHHHHHHHHHT-
T ss_pred -HHh--CCCCCEEEECCCHH-HHHHHHHHHhCc
Confidence 443 44579999998643 477889999874
No 43
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=99.81 E-value=3.8e-20 Score=157.51 Aligned_cols=88 Identities=35% Similarity=0.524 Sum_probs=81.3
Q ss_pred cchhHHHHHHHHHHHcCCCCCCCcceeecCCCCceeeeecccCCCCC-----------CCCHHHHHHHHHHHHhhHHHHH
Q 023671 187 TMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTEVV 255 (279)
Q Consensus 187 t~lds~R~~~~la~~l~v~~~~V~~~ViGehg~~~~vp~~S~~~v~~-----------~~~~~~~~~i~~~v~~~~~~i~ 255 (279)
|.||++||+++||+++|++|.+++++||||||+ ++||+||++++++ .++++++++|.++++++|++|+
T Consensus 1 T~LDs~R~~~~la~~l~v~~~~v~~~ViGeHg~-s~~~~~S~~~v~g~pl~~~~~~~~~~~~~~~~~l~~~v~~~g~~ii 79 (174)
T PF02866_consen 1 TMLDSARFRYFLAEKLGVNPSSVNAYVIGEHGD-SQVPDWSHAKVGGVPLLSYAKPSGKLSEEELEELTERVRKAGYEII 79 (174)
T ss_dssp THHHHHHHHHHHHHHHTSGGGGEEEEEEBSSST-TEEEEGGGEEETTEEHHHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHCcCccceEEEEEecCCc-ceeeeeecccccccccccccccccchhHHhhhccccccEeccceee
Confidence 679999999999999999999999999999999 9999999999863 3567778999999999999999
Q ss_pred hhhcCCCcchHHHHHHHHHHHh
Q 023671 256 EAKAGAGSATLSMRLNLRMHAS 277 (279)
Q Consensus 256 ~~k~g~gs~~~s~A~a~~~~~~ 277 (279)
++|+ |+++||+|.|++++++
T Consensus 80 ~~k~--g~t~~s~A~a~~~~v~ 99 (174)
T PF02866_consen 80 KAKG--GSTSYSIAAAAARIVE 99 (174)
T ss_dssp HHHS--SSCHHHHHHHHHHHHH
T ss_pred eecc--ccCcCCHHHHHHHHHH
Confidence 9883 8999999999999986
No 44
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=99.80 E-value=5.3e-19 Score=167.78 Aligned_cols=170 Identities=26% Similarity=0.342 Sum_probs=123.4
Q ss_pred CCcEEEEEcCCCchHHHHHH--HHHhCC--CCcEEEEEeCCC-chh----HHhhhhcccCCCeEEEEeCCCCHHhhhCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAM--LMKINP--LVSVLHLYDVVN-TPG----VTADISHMDTGAVVRGFLGQPQLENALTGM 110 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~--~L~~~~--~~~ev~L~D~~~-~~g----~~~DL~~~~~~~~v~~~~~~~d~~eal~~A 110 (279)
++.||+|||| |+++.+... .|.+.+ ...||.|+|+++ ... .+..+.... ...++... ++|+++|++||
T Consensus 2 ~~~KI~iIGg-GSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~~~~~~v~~~-g~~~kv~~-ttd~~eAl~gA 78 (442)
T COG1486 2 KKFKIVIIGG-GSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAILAKKLVEEA-GAPVKVEA-TTDRREALEGA 78 (442)
T ss_pred CcceEEEECC-CccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHHHHHHHHHhh-CCCeEEEE-ecCHHHHhcCC
Confidence 4569999999 888775532 343333 357999999988 222 222333332 23355543 56899999999
Q ss_pred CEEEEccCC------------CCCCCCch--------hhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHH
Q 023671 111 DLVIIPAGV------------PRKPGMTR--------DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE 170 (279)
Q Consensus 111 DiVIitag~------------~~k~g~~r--------~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~ 170 (279)
|||+.+..+ |.|+|..+ .-...++++++.+|++.|+++||+||++++|||+..+|..+
T Consensus 79 dfVi~~~rvG~l~~r~~De~IplkyG~~gqET~G~GGi~~glRtIpvildi~~~m~~~~P~Aw~lNytNP~~~vTeAv-- 156 (442)
T COG1486 79 DFVITQIRVGGLEAREKDERIPLKHGLYGQETNGPGGIFYGLRTIPVILDIAKDMEKVCPNAWMLNYTNPAAIVTEAV-- 156 (442)
T ss_pred CEEEEEEeeCCcccchhhhccchhhCccccccccccHHHhhcccchHHHHHHHHHHHhCCCceEEeccChHHHHHHHH--
Confidence 999998632 44444222 12346899999999999999999999999999999988654
Q ss_pred HHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCC-CCCcceeecCCCC
Q 023671 171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDP-RDVDVPVVGGHAG 219 (279)
Q Consensus 171 ~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~-~~V~~~ViGehg~ 219 (279)
.+. +|.-|++|+|+..- -....+|+.|++++ ++++..+.|-+|-
T Consensus 157 --~r~--~~~~K~VGlCh~~~-g~~~~lAe~L~~~~~~~l~~~~aGlNH~ 201 (442)
T COG1486 157 --RRL--YPKIKIVGLCHGPI-GIAMELAEVLGLEPREDLRYRVAGLNHM 201 (442)
T ss_pred --HHh--CCCCcEEeeCCchH-HHHHHHHHHhCCCchhceeEEEeechhh
Confidence 442 45349999998633 36788999999975 9999999996654
No 45
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=98.95 E-value=1.9e-08 Score=94.68 Aligned_cols=115 Identities=18% Similarity=0.303 Sum_probs=85.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch------hH-------Hhhhhccc-CCCeEEEEeCCCCHHhhh
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GV-------TADISHMD-TGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~------g~-------~~DL~~~~-~~~~v~~~~~~~d~~eal 107 (279)
|||+|+|. |.||...+..|++.|+ +|+++|+++.+ |. ..+|.... ...+++. |+|+++++
T Consensus 1 MkI~viGt-GYVGLv~g~~lA~~GH--eVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~f---Ttd~~~a~ 74 (414)
T COG1004 1 MKITVIGT-GYVGLVTGACLAELGH--EVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRF---TTDYEEAV 74 (414)
T ss_pred CceEEECC-chHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEE---EcCHHHHH
Confidence 79999998 9999999999999998 99999998721 11 11222222 1234554 56888999
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe--cCCCCchHHHH
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA 168 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~--TNPvd~~t~~~ 168 (279)
+++|++|++.|.|.++.. ..+...++..++.|.+..+...+++. |-|++....+-
T Consensus 75 ~~adv~fIavgTP~~~dg------~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~ 131 (414)
T COG1004 75 KDADVVFIAVGTPPDEDG------SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVR 131 (414)
T ss_pred hcCCEEEEEcCCCCCCCC------CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHH
Confidence 999999999999987632 23467788999999988876444443 78998877654
No 46
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.94 E-value=2.8e-09 Score=91.28 Aligned_cols=117 Identities=24% Similarity=0.369 Sum_probs=75.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--ch---hHHhh-hh---ccc---------CCCeEEEEeCCCCHH
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TP---GVTAD-IS---HMD---------TGAVVRGFLGQPQLE 104 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~---g~~~D-L~---~~~---------~~~~v~~~~~~~d~~ 104 (279)
||+|||| |.+|..+|..++..|+ +|.|+|.++ .. ....+ +. ... ...+++. ++|++
T Consensus 1 ~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~---~~dl~ 74 (180)
T PF02737_consen 1 KVAVIGA-GTMGRGIAALFARAGY--EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISF---TTDLE 74 (180)
T ss_dssp EEEEES--SHHHHHHHHHHHHTTS--EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEE---ESSGG
T ss_pred CEEEEcC-CHHHHHHHHHHHhCCC--cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhccc---ccCHH
Confidence 7999999 9999999999999998 999999987 11 11111 11 100 0124443 35775
Q ss_pred hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCe
Q 023671 105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKL 183 (279)
Q Consensus 105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kV 183 (279)
+ +.+||+||.+. .++.++.+++..++++.+ |++++ .||...+-.. ++.. ... .|+|+
T Consensus 75 ~-~~~adlViEai--------------~E~l~~K~~~~~~l~~~~~~~~il--asnTSsl~i~---~la~-~~~-~p~R~ 132 (180)
T PF02737_consen 75 E-AVDADLVIEAI--------------PEDLELKQELFAELDEICPPDTIL--ASNTSSLSIS---ELAA-ALS-RPERF 132 (180)
T ss_dssp G-GCTESEEEE-S---------------SSHHHHHHHHHHHHCCS-TTSEE--EE--SSS-HH---HHHT-TSS-TGGGE
T ss_pred H-Hhhhheehhhc--------------cccHHHHHHHHHHHHHHhCCCceE--EecCCCCCHH---HHHh-ccC-cCceE
Confidence 5 45999999986 356899999999999998 56654 6887764432 2222 233 35678
Q ss_pred eeec
Q 023671 184 LGVT 187 (279)
Q Consensus 184 iG~t 187 (279)
+|+-
T Consensus 133 ig~H 136 (180)
T PF02737_consen 133 IGMH 136 (180)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 8873
No 47
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.87 E-value=1.1e-08 Score=94.39 Aligned_cols=141 Identities=22% Similarity=0.288 Sum_probs=94.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--H----hhhhccc------CCCeEEEEeCCCCHHh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T----ADISHMD------TGAVVRGFLGQPQLEN 105 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~-~g~--~----~DL~~~~------~~~~v~~~~~~~d~~e 105 (279)
.+||+|||| |.+|+.+|+.++..|+ +|+++|+++ + ++. . ..+.... ....+..+..++++ .
T Consensus 3 i~kv~ViGa-G~MG~gIA~~~A~~G~--~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~-~ 78 (307)
T COG1250 3 IKKVAVIGA-GVMGAGIAAVFALAGY--DVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDL-A 78 (307)
T ss_pred ccEEEEEcc-cchhHHHHHHHhhcCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCch-h
Confidence 469999999 9999999999999778 999999986 1 111 1 1111110 01111122334565 5
Q ss_pred hhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCee
Q 023671 106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL 184 (279)
Q Consensus 106 al~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kVi 184 (279)
++++||+||.++ .+|.++.+++..++.+++ |++++ .||.+.+.-.-+++ .. ..|+|++
T Consensus 79 ~l~~~DlVIEAv--------------~E~levK~~vf~~l~~~~~~~aIl--ASNTSsl~it~ia~----~~-~rper~i 137 (307)
T COG1250 79 ALKDADLVIEAV--------------VEDLELKKQVFAELEALAKPDAIL--ASNTSSLSITELAE----AL-KRPERFI 137 (307)
T ss_pred HhccCCEEEEec--------------cccHHHHHHHHHHHHhhcCCCcEE--eeccCCCCHHHHHH----Hh-CCchhEE
Confidence 899999999986 578899999999999998 68865 89998854322222 22 3467899
Q ss_pred eec--c-----------------hhHHHHHHHHHHHcCCCC
Q 023671 185 GVT--M-----------------LDVVRANTFVAEVLGLDP 206 (279)
Q Consensus 185 G~t--~-----------------lds~R~~~~la~~l~v~~ 206 (279)
|+- + -++...-..+++++|-.|
T Consensus 138 G~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~ 178 (307)
T COG1250 138 GLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTP 178 (307)
T ss_pred EEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCC
Confidence 872 1 144445566777777443
No 48
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.80 E-value=1.8e-08 Score=86.71 Aligned_cols=124 Identities=21% Similarity=0.312 Sum_probs=74.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc------hhHH-------hhhhccc-CCCeEEEEeCCCCHHhhh
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVT-------ADISHMD-TGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~------~g~~-------~DL~~~~-~~~~v~~~~~~~d~~eal 107 (279)
|||+|||. |+||..+|..|+..|+ +|+.+|+++. .|.. .++.... ...+++. ++|..+++
T Consensus 1 M~I~ViGl-GyvGl~~A~~lA~~G~--~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~---t~~~~~ai 74 (185)
T PF03721_consen 1 MKIAVIGL-GYVGLPLAAALAEKGH--QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA---TTDIEEAI 74 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTS--EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE---ESEHHHHH
T ss_pred CEEEEECC-CcchHHHHHHHHhCCC--EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh---hhhhhhhh
Confidence 79999998 9999999999999998 9999999871 1110 1111111 1345665 34777889
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCCchHHHHHHHHHHhCC
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKKAGT 177 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd~~t~~~~~~~~~~~~ 177 (279)
++||++|+|.+.|.+.+.+ .+...+++.++.|.+.. ++.+|++= |=|++....++..++.+.++
T Consensus 75 ~~adv~~I~VpTP~~~~~~------~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~ 140 (185)
T PF03721_consen 75 KDADVVFICVPTPSDEDGS------PDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSG 140 (185)
T ss_dssp HH-SEEEE----EBETTTS------BETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCC
T ss_pred hccceEEEecCCCccccCC------ccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcc
Confidence 9999999999988765321 12344566666666654 34443333 67888777555566666554
No 49
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.78 E-value=7.4e-08 Score=89.70 Aligned_cols=120 Identities=15% Similarity=0.125 Sum_probs=81.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHH-------h-hhhccc-----CCCeEEEEeCCCCHHhh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVT-------A-DISHMD-----TGAVVRGFLGQPQLENA 106 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~-------~-DL~~~~-----~~~~v~~~~~~~d~~ea 106 (279)
.+||+|||+ |.+|+.+|..++..|+ +|+++|+++ ..... . .+.... ...++.. +++++++
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~--~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~---~~~l~~a 80 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGL--DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRF---VATIEAC 80 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhcee---cCCHHHH
Confidence 358999999 9999999999999999 999999986 11110 0 111110 0122332 3578888
Q ss_pred hCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (279)
Q Consensus 107 l~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~ 186 (279)
+++||+||.++ .+|.++.+++...+.+.+|... |+.||.+.+... ++ ..... .|+|++|+
T Consensus 81 v~~aDlViEav--------------pE~l~vK~~lf~~l~~~~~~~a-IlaSnTS~l~~s---~l-a~~~~-~p~R~~g~ 140 (321)
T PRK07066 81 VADADFIQESA--------------PEREALKLELHERISRAAKPDA-IIASSTSGLLPT---DF-YARAT-HPERCVVG 140 (321)
T ss_pred hcCCCEEEECC--------------cCCHHHHHHHHHHHHHhCCCCe-EEEECCCccCHH---HH-HHhcC-CcccEEEE
Confidence 99999999986 3567888999999999986433 457888876542 22 22233 34678875
No 50
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=98.72 E-value=1e-07 Score=87.08 Aligned_cols=109 Identities=19% Similarity=0.293 Sum_probs=76.3
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCCCCCC
Q 023671 46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVPRKPG 124 (279)
Q Consensus 46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~~k~g 124 (279)
|+||+||+|++++..|+.+|...+|..+|+........++........+.. +....++.++++++|+||++|+...-.+
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~~ 81 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPWG 81 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCccccccC
Confidence 899999999999999999996669999998762211112222211101222 2223467889999999999987543333
Q ss_pred -CchhhHHHhhHHHHHHHHHHHHHhCCCceE
Q 023671 125 -MTRDDLFNINAGIVRTLCEGIAKCCPNATV 154 (279)
Q Consensus 125 -~~r~d~~~~N~~i~~~i~~~I~~~~p~a~v 154 (279)
.....+...|+...+.+++...+..-+.+|
T Consensus 82 ~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlV 112 (280)
T PF01073_consen 82 DYPPEEYYKVNVDGTRNVLEAARKAGVKRLV 112 (280)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHcCCCEEE
Confidence 346678899999999999999987655443
No 51
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.71 E-value=1.5e-07 Score=86.34 Aligned_cols=118 Identities=18% Similarity=0.234 Sum_probs=80.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hh----hhhcccC---------CCeEEEEeCCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DISHMDT---------GAVVRGFLGQPQ 102 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~----DL~~~~~---------~~~v~~~~~~~d 102 (279)
+.||+|||+ |.+|..+|..++..|+ +|+++|+++ . .+. .. .+.+... ..+++. ++|
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~---~~~ 78 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGV--DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF---TTD 78 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe---eCC
Confidence 349999999 9999999999999998 999999987 1 111 00 0111110 123332 457
Q ss_pred HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-C-CceEEEecCCCCchHHHHHHHHHHhCCCCC
Q 023671 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-P-NATVNLISNPVNSTVPIAAEVFKKAGTYDP 180 (279)
Q Consensus 103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~~ 180 (279)
+ +++++||+||.++ .++.++.+++...+++.+ + ++++ +||........+ ...... +
T Consensus 79 ~-~~~~~~d~ViEav--------------~E~~~~K~~l~~~l~~~~~~~~~il--~snTS~~~~~~l----a~~~~~-~ 136 (286)
T PRK07819 79 L-GDFADRQLVIEAV--------------VEDEAVKTEIFAELDKVVTDPDAVL--ASNTSSIPIMKL----AAATKR-P 136 (286)
T ss_pred H-HHhCCCCEEEEec--------------ccCHHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcCC-C
Confidence 6 7799999999986 356788899999999997 4 5544 677776444222 223333 4
Q ss_pred CCeeee
Q 023671 181 KKLLGV 186 (279)
Q Consensus 181 ~kViG~ 186 (279)
+|++|+
T Consensus 137 ~r~~g~ 142 (286)
T PRK07819 137 GRVLGL 142 (286)
T ss_pred ccEEEE
Confidence 677776
No 52
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.67 E-value=2.7e-07 Score=84.35 Aligned_cols=120 Identities=21% Similarity=0.305 Sum_probs=76.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHh----hhhc-----ccC---------CCeEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA----DISH-----MDT---------GAVVRGFLGQP 101 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~----DL~~-----~~~---------~~~v~~~~~~~ 101 (279)
.+||+|||+ |.+|+.+|..++..|+ +|+++|+++ ....+. .+.+ ... ..++.. ++
T Consensus 3 ~~kIaViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~ 76 (287)
T PRK08293 3 IKNVTVAGA-GVLGSQIAFQTAFHGF--DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL---TT 76 (287)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE---eC
Confidence 359999999 9999999999999998 999999986 111111 0110 000 123332 35
Q ss_pred CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 023671 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (279)
Q Consensus 102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~ 181 (279)
|+.+++++||+||++.. ++.+..+++.+++.+++++..+| ++|.+..... ++.. .... +.
T Consensus 77 d~~~a~~~aDlVieavp--------------e~~~~k~~~~~~l~~~~~~~~ii-~sntSt~~~~---~~~~-~~~~-~~ 136 (287)
T PRK08293 77 DLAEAVKDADLVIEAVP--------------EDPEIKGDFYEELAKVAPEKTIF-ATNSSTLLPS---QFAE-ATGR-PE 136 (287)
T ss_pred CHHHHhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCCEE-EECcccCCHH---HHHh-hcCC-cc
Confidence 77778999999999862 34567778888888887543332 5677665332 2222 2222 45
Q ss_pred Ceeee
Q 023671 182 KLLGV 186 (279)
Q Consensus 182 kViG~ 186 (279)
|++|+
T Consensus 137 r~vg~ 141 (287)
T PRK08293 137 KFLAL 141 (287)
T ss_pred cEEEE
Confidence 67765
No 53
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.67 E-value=8.6e-08 Score=98.07 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=83.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hhhh----hccc---------CCCeEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADI----SHMD---------TGAVVRGFLGQP 101 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~DL----~~~~---------~~~~v~~~~~~~ 101 (279)
+.+||+|||| |.+|..+|..++..|+ +|+|+|+++ . .+. ..+. .+.. ...+++. ++
T Consensus 312 ~i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~ 385 (714)
T TIGR02437 312 DVKQAAVLGA-GIMGGGIAYQSASKGT--PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP---TL 385 (714)
T ss_pred ccceEEEECC-chHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eC
Confidence 4569999999 9999999999999999 999999986 1 111 1111 1000 0123433 45
Q ss_pred CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchH-HHHHHHHHHhCCCC
Q 023671 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV-PIAAEVFKKAGTYD 179 (279)
Q Consensus 102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t-~~~~~~~~~~~~~~ 179 (279)
|+ +++++||+||.++ .++.++.+++..++++.+ |++++ .||.+.+-. .++ . ... .
T Consensus 386 ~~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asnTS~l~i~~ia----~-~~~-~ 442 (714)
T TIGR02437 386 SY-AGFDNVDIVVEAV--------------VENPKVKAAVLAEVEQHVREDAIL--ASNTSTISISLLA----K-ALK-R 442 (714)
T ss_pred CH-HHhcCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHHH----h-hcC-C
Confidence 65 7799999999986 467899999999999998 46654 799988543 332 2 233 3
Q ss_pred CCCeeee
Q 023671 180 PKKLLGV 186 (279)
Q Consensus 180 ~~kViG~ 186 (279)
|+|++|+
T Consensus 443 p~r~ig~ 449 (714)
T TIGR02437 443 PENFCGM 449 (714)
T ss_pred cccEEEE
Confidence 6789988
No 54
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.66 E-value=1.1e-07 Score=97.66 Aligned_cols=118 Identities=19% Similarity=0.222 Sum_probs=83.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hhhhhc----cc---------CCCeEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TADISH----MD---------TGAVVRGFLGQP 101 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~DL~~----~~---------~~~~v~~~~~~~ 101 (279)
+..||+|||| |.+|+.+|..++..|+ +|+|+|+++ . ++. ..+..+ .. ...+++. ++
T Consensus 334 ~i~~v~ViGa-G~MG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~ 407 (737)
T TIGR02441 334 PVKTLAVLGA-GLMGAGIAQVSVDKGL--KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP---TL 407 (737)
T ss_pred cccEEEEECC-CHhHHHHHHHHHhCCC--cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eC
Confidence 3468999999 9999999999999999 999999987 1 111 111111 00 0123443 45
Q ss_pred CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchH-HHHHHHHHHhCCCC
Q 023671 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTV-PIAAEVFKKAGTYD 179 (279)
Q Consensus 102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t-~~~~~~~~~~~~~~ 179 (279)
|+ +++++||+||.++ .+|.++.+++..++++++| ++++ .||.+.+-. .++ . ....
T Consensus 408 ~~-~~~~~aDlViEAv--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~-~~~~- 464 (737)
T TIGR02441 408 DY-SGFKNADMVIEAV--------------FEDLSLKHKVIKEVEAVVPPHCII--ASNTSALPIKDIA----A-VSSR- 464 (737)
T ss_pred CH-HHhccCCeehhhc--------------cccHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----h-hcCC-
Confidence 75 6899999999986 4678999999999999995 6644 799888543 332 2 2333
Q ss_pred CCCeeee
Q 023671 180 PKKLLGV 186 (279)
Q Consensus 180 ~~kViG~ 186 (279)
|+|++|+
T Consensus 465 p~r~ig~ 471 (737)
T TIGR02441 465 PEKVIGM 471 (737)
T ss_pred ccceEEE
Confidence 5789886
No 55
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.64 E-value=2.7e-07 Score=94.32 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=82.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-c--hhH--Hh-hhhcc---c---------CCCeEEEEeCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PGV--TA-DISHM---D---------TGAVVRGFLGQ 100 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~-~--~g~--~~-DL~~~---~---------~~~~v~~~~~~ 100 (279)
+.+||+|||| |.+|+.+|..++ ..|+ +|+|+|+++ . .+. .. .+... . ...+++. +
T Consensus 303 ~i~~v~ViGa-G~mG~~iA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 376 (699)
T TIGR02440 303 KIKKVGILGG-GLMGGGIASVTATKAGI--PVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG---T 376 (699)
T ss_pred cccEEEEECC-cHHHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE---e
Confidence 4569999999 999999999988 4798 999999987 1 111 11 11110 0 0123433 4
Q ss_pred CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD 179 (279)
Q Consensus 101 ~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~ 179 (279)
+|+ +++++||+||.++ .++.++.+++..+++++++ ++++ .||.+.+-..-++ . .. -.
T Consensus 377 ~~~-~~~~~adlViEav--------------~E~l~~K~~v~~~l~~~~~~~~il--asnTS~l~i~~la---~-~~-~~ 434 (699)
T TIGR02440 377 TDY-RGFKDVDIVIEAV--------------FEDLALKHQMVKDIEQECAAHTIF--ASNTSSLPIGQIA---A-AA-SR 434 (699)
T ss_pred CCh-HHhccCCEEEEec--------------cccHHHHHHHHHHHHhhCCCCcEE--EeCCCCCCHHHHH---H-hc-CC
Confidence 575 6899999999986 4578999999999999995 5544 7998885442222 2 22 24
Q ss_pred CCCeeee
Q 023671 180 PKKLLGV 186 (279)
Q Consensus 180 ~~kViG~ 186 (279)
|+|++|+
T Consensus 435 p~r~~g~ 441 (699)
T TIGR02440 435 PENVIGL 441 (699)
T ss_pred cccEEEE
Confidence 5788886
No 56
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.62 E-value=2.7e-07 Score=94.50 Aligned_cols=117 Identities=18% Similarity=0.221 Sum_probs=83.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhH--Hh----hhhccc---------CCCeEEEEeCCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGV--TA----DISHMD---------TGAVVRGFLGQPQ 102 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~--~~----DL~~~~---------~~~~v~~~~~~~d 102 (279)
..||+|||| |.+|..+|..++..|+ +|+|+|+++ . .+. .. .+.... ...+++. ++|
T Consensus 313 i~~v~ViGa-G~mG~gIA~~~a~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~~~ 386 (715)
T PRK11730 313 VKQAAVLGA-GIMGGGIAYQSASKGV--PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP---TLD 386 (715)
T ss_pred cceEEEECC-chhHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE---eCC
Confidence 468999999 9999999999999999 999999987 1 111 11 111110 0123443 457
Q ss_pred HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCch-HHHHHHHHHHhCCCCC
Q 023671 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST-VPIAAEVFKKAGTYDP 180 (279)
Q Consensus 103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~-t~~~~~~~~~~~~~~~ 180 (279)
+ +++++||+||.++ .++.++.+++..++++++| ++++ .||.+.+- +.++ . ... .|
T Consensus 387 ~-~~~~~aDlViEav--------------~E~l~~K~~vf~~l~~~~~~~~il--asNTSsl~i~~la----~-~~~-~p 443 (715)
T PRK11730 387 Y-AGFERVDVVVEAV--------------VENPKVKAAVLAEVEQKVREDTIL--ASNTSTISISLLA----K-ALK-RP 443 (715)
T ss_pred H-HHhcCCCEEEecc--------------cCcHHHHHHHHHHHHhhCCCCcEE--EEcCCCCCHHHHH----h-hcC-CC
Confidence 6 7799999999986 4678999999999999995 5544 79998854 3332 2 233 35
Q ss_pred CCeeee
Q 023671 181 KKLLGV 186 (279)
Q Consensus 181 ~kViG~ 186 (279)
+|++|+
T Consensus 444 ~r~~g~ 449 (715)
T PRK11730 444 ENFCGM 449 (715)
T ss_pred ccEEEE
Confidence 789986
No 57
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=98.60 E-value=1.2e-06 Score=77.18 Aligned_cols=100 Identities=20% Similarity=0.153 Sum_probs=64.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhccc----CCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMD----TGAVVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~----~~~~v~~~~~~~d~~eal~~ADiVIi 115 (279)
|||+|||++|.+|++++..|...++ +|.++|+++ ......++.+.. ....+.. + +..++++++|+||+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~--~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~---~-~~~ea~~~aDvVil 74 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN--KIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTG---A-DNAEAAKRADVVIL 74 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC--EEEEEEcCHHHHHHHHHHHHhhccccCCCceEEE---e-ChHHHHhcCCEEEE
Confidence 5899998449999999999999886 999999876 222222222211 0111221 1 33678999999999
Q ss_pred ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 163 (279)
Q Consensus 116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~ 163 (279)
+... ..+.++++.+....++.++|-++||.+.
T Consensus 75 avp~----------------~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 75 AVPW----------------DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred ECCH----------------HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 8631 1233444445443344678888999875
No 58
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=98.60 E-value=1.4e-06 Score=81.59 Aligned_cols=169 Identities=14% Similarity=0.040 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhh-cc--cCCCeEEEEeC-C---CCHHhhhCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADIS-HM--DTGAVVRGFLG-Q---PQLENALTGM 110 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~-~~--~~~~~v~~~~~-~---~d~~eal~~A 110 (279)
+++||.|+||+||+|++++..|+..++ +|+.+|+... .....++. .. ....++..+.+ - .++.+.++++
T Consensus 14 ~~~~vlVtGatGfiG~~lv~~L~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITGVAGFIGSGLLEELLFLNQ--TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 357999999999999999999999987 9999997541 10011111 00 00112222221 1 1234557899
Q ss_pred CEEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC------CCchHHHHHHHHHHhCCCCCCC
Q 023671 111 DLVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP------VNSTVPIAAEVFKKAGTYDPKK 182 (279)
Q Consensus 111 DiVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP------vd~~t~~~~~~~~~~~~~~~~k 182 (279)
|+||++|+....+ .....+....|+....++++.+++....- ++++|.. .+... .+.....|..
T Consensus 92 d~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~-~v~~SS~~vyg~~~~~~~-------~e~~~~~p~~ 163 (348)
T PRK15181 92 DYVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSS-FTYAASSSTYGDHPDLPK-------IEERIGRPLS 163 (348)
T ss_pred CEEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCe-EEEeechHhhCCCCCCCC-------CCCCCCCCCC
Confidence 9999999754321 12345567889999999999998875443 3433311 01000 0001122345
Q ss_pred eeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671 183 LLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218 (279)
Q Consensus 183 ViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg 218 (279)
.+|.+.+...++-...++..+++...++ ..++|.+.
T Consensus 164 ~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~ 200 (348)
T PRK15181 164 PYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQ 200 (348)
T ss_pred hhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCC
Confidence 6676655444554445666688777776 45888753
No 59
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.57 E-value=4.4e-07 Score=92.86 Aligned_cols=119 Identities=18% Similarity=0.303 Sum_probs=83.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCC-c--hh--HHhhhhc----cc---------CCCeEEEEeCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVN-T--PG--VTADISH----MD---------TGAVVRGFLGQ 100 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~-~--~g--~~~DL~~----~~---------~~~~v~~~~~~ 100 (279)
+.+||+|||| |.+|..+|..++ ..|+ +|+|+|+++ . .+ ...+..+ .. ...+++. +
T Consensus 308 ~i~~v~ViGa-G~mG~giA~~~a~~~G~--~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~---~ 381 (708)
T PRK11154 308 PVNKVGVLGG-GLMGGGIAYVTATKAGL--PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISG---T 381 (708)
T ss_pred cccEEEEECC-chhhHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEE---e
Confidence 3469999999 999999999998 7798 999999976 1 11 1111110 00 0123443 4
Q ss_pred CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYD 179 (279)
Q Consensus 101 ~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~ 179 (279)
+|+ +++++||+||.++ .+|.++.+++..++++++ |++++ .||.+.+...-+ .. ... .
T Consensus 382 ~~~-~~~~~aDlViEav--------------~E~~~~K~~v~~~le~~~~~~~il--asnTS~l~i~~l---a~-~~~-~ 439 (708)
T PRK11154 382 TDY-RGFKHADVVIEAV--------------FEDLALKQQMVAEVEQNCAPHTIF--ASNTSSLPIGQI---AA-AAA-R 439 (708)
T ss_pred CCh-HHhccCCEEeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH---HH-hcC-c
Confidence 575 7899999999986 467899999999999998 56654 799888544222 12 233 3
Q ss_pred CCCeeee
Q 023671 180 PKKLLGV 186 (279)
Q Consensus 180 ~~kViG~ 186 (279)
|+|++|+
T Consensus 440 p~r~ig~ 446 (708)
T PRK11154 440 PEQVIGL 446 (708)
T ss_pred ccceEEE
Confidence 5688887
No 60
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.56 E-value=1e-06 Score=86.20 Aligned_cols=123 Identities=15% Similarity=0.180 Sum_probs=78.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch------hH-------HhhhhcccCCCeEEEEeCCCCHHhhh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP------GV-------TADISHMDTGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~------g~-------~~DL~~~~~~~~v~~~~~~~d~~eal 107 (279)
+|||+|||+ |.||..+|..|+..|..-+|+.+|+++.+ |. ..++.......++.. ++++.+++
T Consensus 1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~---t~~~~~~i 76 (473)
T PLN02353 1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF---STDVEKHV 76 (473)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE---EcCHHHHH
Confidence 579999998 99999999999988643499999998721 11 011111000112333 35677789
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe--cCCCCchHHHH
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI--SNPVNSTVPIA 168 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~--TNPvd~~t~~~ 168 (279)
++||++|+|.++|.+.+....+ -..+...+.+.++.|.++.++..+++. |-|+.....+.
T Consensus 77 ~~advi~I~V~TP~~~~g~~~~-~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~ 138 (473)
T PLN02353 77 AEADIVFVSVNTPTKTRGLGAG-KAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIE 138 (473)
T ss_pred hcCCEEEEEeCCCCCCCCCcCC-CCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHH
Confidence 9999999999998753210000 012345677888888877654443333 78888765544
No 61
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.55 E-value=1.3e-06 Score=79.55 Aligned_cols=118 Identities=20% Similarity=0.350 Sum_probs=77.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhH-----H-hhhhccc---------CCCeEEEEeCCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGV-----T-ADISHMD---------TGAVVRGFLGQPQ 102 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~-----~-~DL~~~~---------~~~~v~~~~~~~d 102 (279)
++||+|||+ |.+|..++..++..|+ +|+++|+++. .+. . .++.... ...+++. ++|
T Consensus 3 ~~kI~VIG~-G~mG~~ia~~la~~g~--~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~---~~~ 76 (282)
T PRK05808 3 IQKIGVIGA-GTMGNGIAQVCAVAGY--DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG---TTD 76 (282)
T ss_pred ccEEEEEcc-CHHHHHHHHHHHHCCC--ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 358999999 9999999999999998 9999999871 111 0 0111110 0113333 346
Q ss_pred HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 023671 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (279)
Q Consensus 103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~ 181 (279)
+ +++++||+||+++ .++..+.+++.+.+.++++ ++++ +||-..+-...+ ....+. +.
T Consensus 77 ~-~~~~~aDlVi~av--------------~e~~~~k~~~~~~l~~~~~~~~il--~s~ts~~~~~~l----a~~~~~-~~ 134 (282)
T PRK05808 77 L-DDLKDADLVIEAA--------------TENMDLKKKIFAQLDEIAKPEAIL--ATNTSSLSITEL----AAATKR-PD 134 (282)
T ss_pred H-HHhccCCeeeecc--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HHhhCC-Cc
Confidence 5 5689999999996 2345667788888998875 5544 577776554322 222233 35
Q ss_pred Ceeee
Q 023671 182 KLLGV 186 (279)
Q Consensus 182 kViG~ 186 (279)
|++|+
T Consensus 135 r~ig~ 139 (282)
T PRK05808 135 KVIGM 139 (282)
T ss_pred ceEEe
Confidence 77776
No 62
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=98.55 E-value=9.7e-07 Score=85.56 Aligned_cols=112 Identities=14% Similarity=0.043 Sum_probs=74.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~ 120 (279)
.|||.|+||+||||++++..|+.+|+ +|+.+|+... +....+.+......+..+.. +-+.+.+.++|+||++|+..
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~--~V~~ldr~~~-~~~~~~~~~~~~~~~~~~~~-Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD--EVIVIDNFFT-GRKENLVHLFGNPRFELIRH-DVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC--EEEEEeCCCC-ccHhHhhhhccCCceEEEEC-ccccccccCCCEEEECceec
Confidence 48999999999999999999999998 9999997531 11111111111122332221 11234578999999999753
Q ss_pred C--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 121 R--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 121 ~--k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
. ....+..+.+..|+....++++.+++.+. .+|++|
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~--r~V~~S 233 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA--RFLLTS 233 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 2 12234467788999999999999998753 455543
No 63
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.52 E-value=1.2e-07 Score=83.25 Aligned_cols=120 Identities=23% Similarity=0.332 Sum_probs=85.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c-----hhHHhhhhccc-----------------CCCeEEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T-----PGVTADISHMD-----------------TGAVVRG 96 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~-----~g~~~DL~~~~-----------------~~~~v~~ 96 (279)
+.+.|+|+|| |.+|+.+|...++.|+ .|.|+|.++ + ++....+.+.. ...+++.
T Consensus 10 ~~~~V~ivGa-G~MGSGIAQv~a~sg~--~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~ 86 (298)
T KOG2304|consen 10 EIKNVAIVGA-GQMGSGIAQVAATSGL--NVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKT 86 (298)
T ss_pred cccceEEEcc-cccchhHHHHHHhcCC--ceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHH
Confidence 4568999999 9999999999999999 999999987 1 22222222211 0112222
Q ss_pred EeCCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc-hHHHHHHHHHHh
Q 023671 97 FLGQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS-TVPIAAEVFKKA 175 (279)
Q Consensus 97 ~~~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~-~t~~~~~~~~~~ 175 (279)
++|..+++.|||+||.++ -+|+.+.+++.+.+++.|+...++ .||.+.+ ++.++ ..
T Consensus 87 ---~tnv~~~v~dadliiEAi--------------vEn~diK~~lF~~l~~~ak~~~il-~tNTSSl~lt~ia-----~~ 143 (298)
T KOG2304|consen 87 ---STNVSDAVSDADLIIEAI--------------VENLDIKRKLFKDLDKIAKSSTIL-ATNTSSLSLTDIA-----SA 143 (298)
T ss_pred ---cCCHHHhhhhhHHHHHHH--------------HHhHHHHHHHHHHHHhhcccceEE-eecccceeHHHHH-----hh
Confidence 357788899999988875 689999999999999999754433 6898874 44433 12
Q ss_pred CCCCCCCeeee
Q 023671 176 GTYDPKKLLGV 186 (279)
Q Consensus 176 ~~~~~~kViG~ 186 (279)
. -++.|+.|+
T Consensus 144 ~-~~~srf~Gl 153 (298)
T KOG2304|consen 144 T-QRPSRFAGL 153 (298)
T ss_pred c-cChhhhcee
Confidence 2 346788888
No 64
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.48 E-value=1.7e-06 Score=79.16 Aligned_cols=117 Identities=14% Similarity=0.209 Sum_probs=74.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHh-h-------hh---cccC---------CCeEEEEeCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA-D-------IS---HMDT---------GAVVRGFLGQ 100 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~-D-------L~---~~~~---------~~~v~~~~~~ 100 (279)
.||+|||+ |.+|..++..++..|+ +|+++|+++ ....+. . +. +... ..++.. +
T Consensus 4 ~~I~ViGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~---~ 77 (291)
T PRK06035 4 KVIGVVGS-GVMGQGIAQVFARTGY--DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT---S 77 (291)
T ss_pred cEEEEECc-cHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe---e
Confidence 58999999 9999999999999998 999999987 111110 0 11 1000 012222 3
Q ss_pred CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671 101 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNSTVPIAAEVFKKAGTYD 179 (279)
Q Consensus 101 ~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~t~~~~~~~~~~~~~~ 179 (279)
+++ +++++||+||++.. .+.++.+++.+.+.+.++ ++++ +||...+...-+ .. ... .
T Consensus 78 ~~~-~~~~~aDlVieav~--------------e~~~~k~~~~~~l~~~~~~~~il--~S~tsg~~~~~l---a~-~~~-~ 135 (291)
T PRK06035 78 TSY-ESLSDADFIVEAVP--------------EKLDLKRKVFAELERNVSPETII--ASNTSGIMIAEI---AT-ALE-R 135 (291)
T ss_pred CCH-HHhCCCCEEEEcCc--------------CcHHHHHHHHHHHHhhCCCCeEE--EEcCCCCCHHHH---Hh-hcC-C
Confidence 455 67899999999862 234567788888888875 5544 466665443222 12 121 2
Q ss_pred CCCeeee
Q 023671 180 PKKLLGV 186 (279)
Q Consensus 180 ~~kViG~ 186 (279)
+.|++|+
T Consensus 136 ~~r~ig~ 142 (291)
T PRK06035 136 KDRFIGM 142 (291)
T ss_pred cccEEEE
Confidence 5677776
No 65
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=98.47 E-value=4.5e-06 Score=77.92 Aligned_cols=119 Identities=17% Similarity=0.058 Sum_probs=72.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHH-hhhhcccCCCeEEE-EeCCCCHHhhhCC--CCEE
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT-ADISHMDTGAVVRG-FLGQPQLENALTG--MDLV 113 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~-~DL~~~~~~~~v~~-~~~~~d~~eal~~--ADiV 113 (279)
.+.++|.|+||+|++|++++..|++.|. +|+.+|+++.. ... ..+........+.. .....++.+.+++ .|+|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 79 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA--EVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIV 79 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC--EEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEE
Confidence 4567999999999999999999999997 89999976621 111 11111110001111 1111123344554 5999
Q ss_pred EEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671 114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 114 Iitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN 159 (279)
|++|+.+... ..+....+..|+.....+++.+.+.+....++++|.
T Consensus 80 ih~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS 127 (349)
T TIGR02622 80 FHLAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTS 127 (349)
T ss_pred EECCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 9999854221 112345678899999999999877652334555543
No 66
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=98.45 E-value=2.4e-06 Score=79.25 Aligned_cols=117 Identities=16% Similarity=0.123 Sum_probs=80.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chh--HHhhhhcccCCCeEEEE----eCCCCHHhhhCCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPG--VTADISHMDTGAVVRGF----LGQPQLENALTGMD 111 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g--~~~DL~~~~~~~~v~~~----~~~~d~~eal~~AD 111 (279)
..++|+|+||+||+|+.++..|+++|+ +|+--=+++ .+. +..+|.... .+++.+ ...+.+.+++++||
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY--~V~gtVR~~~~~k~~~~L~~l~~a~--~~l~l~~aDL~d~~sf~~ai~gcd 80 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY--TVRGTVRDPEDEKKTEHLRKLEGAK--ERLKLFKADLLDEGSFDKAIDGCD 80 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC--EEEEEEcCcchhhhHHHHHhcccCc--ccceEEeccccccchHHHHHhCCC
Confidence 457999999999999999999999999 776665554 222 344555332 123322 12245678999999
Q ss_pred EEEEccCCCCCCCC-chhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671 112 LVIIPAGVPRKPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 112 iVIitag~~~k~g~-~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv 161 (279)
.|+++|....-... ...+++.-.++..+.+.+.+++.. ...=+++|+..
T Consensus 81 gVfH~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~-sVkrvV~TSS~ 130 (327)
T KOG1502|consen 81 GVFHTASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTK-SVKRVVYTSST 130 (327)
T ss_pred EEEEeCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccC-CcceEEEeccH
Confidence 99999965432222 234688889999999999999987 22223345544
No 67
>PLN02427 UDP-apiose/xylose synthase
Probab=98.44 E-value=1.9e-06 Score=81.57 Aligned_cols=116 Identities=16% Similarity=0.088 Sum_probs=72.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFL----GQPQLENALTGMDL 112 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADi 112 (279)
.++|||.|+||+||+|++++..|+.+ ++ +|+.+|.+.... .............++.+. ...++.++++++|+
T Consensus 12 ~~~~~VlVTGgtGfIGs~lv~~L~~~~g~--~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ 89 (386)
T PLN02427 12 IKPLTICMIGAGGFIGSHLCEKLMTETPH--KVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL 89 (386)
T ss_pred ccCcEEEEECCcchHHHHHHHHHHhcCCC--EEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence 45689999999999999999999987 46 899999754211 101110000011233221 11234567889999
Q ss_pred EEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 113 VIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 113 VIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
||++|+..... .....+.+..|+.....+++..++.. . .+|++|
T Consensus 90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~S 135 (386)
T PLN02427 90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-K-RLIHFS 135 (386)
T ss_pred EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-C-EEEEEe
Confidence 99999854211 12223556778888888888887655 3 455554
No 68
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=98.44 E-value=1.6e-07 Score=85.97 Aligned_cols=121 Identities=20% Similarity=0.201 Sum_probs=74.6
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEE----EEeC----CCCHHhhhC--CCC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVR----GFLG----QPQLENALT--GMD 111 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~----~~~~----~~d~~eal~--~AD 111 (279)
|.|+||+|++|+.++..|+..+. .+|+++|.++ ......++.......+++ .+.+ ...+..+++ +.|
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p-~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pd 79 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGP-KKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPD 79 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB--SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-S
T ss_pred CEEEccccHHHHHHHHHHHhcCC-CeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCC
Confidence 67999999999999999998875 5999999998 334444553211111221 1111 112345667 999
Q ss_pred EEEEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec----CCCCchH
Q 023671 112 LVIIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNSTV 165 (279)
Q Consensus 112 iVIitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T----NPvd~~t 165 (279)
+|+++|+.-.-+ .....+.+..|+--.+++++...++..+.+|.+.| ||.++|-
T Consensus 80 iVfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~ISTDKAv~PtnvmG 139 (293)
T PF02719_consen 80 IVFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFISTDKAVNPTNVMG 139 (293)
T ss_dssp EEEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEECGCSS--SHHH
T ss_pred EEEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccCCCCcHHH
Confidence 999999753211 23456778899999999999999998887777775 5665553
No 69
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.43 E-value=8.4e-07 Score=74.14 Aligned_cols=93 Identities=23% Similarity=0.289 Sum_probs=61.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc--C------CCeEEEEeCCCCHHhhhCCCCEEE
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD--T------GAVVRGFLGQPQLENALTGMDLVI 114 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~--~------~~~v~~~~~~~d~~eal~~ADiVI 114 (279)
||+|+|| |..|..+|..|..+++ +|.|+++++.....+.-.+.. . ...+.. ++|+++++++||+||
T Consensus 1 KI~ViGa-G~~G~AlA~~la~~g~--~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~---t~dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIGA-GNWGTALAALLADNGH--EVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKA---TTDLEEALEDADIII 74 (157)
T ss_dssp EEEEESS-SHHHHHHHHHHHHCTE--EEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEE---ESSHHHHHTT-SEEE
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC--EEEEEeccHHHHHHHHHhCCCCCCCCCcccCccccc---ccCHHHHhCcccEEE
Confidence 8999999 9999999999999997 999999976211111111211 0 123433 468889999999999
Q ss_pred EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEe
Q 023671 115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLI 157 (279)
Q Consensus 115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~ 157 (279)
++.. ....+++++++..+-+ +..++++
T Consensus 75 iavP----------------s~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 75 IAVP----------------SQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp E-S-----------------GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred eccc----------------HHHHHHHHHHHhhccCCCCEEEEe
Confidence 9852 2236678888887764 4445443
No 70
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=98.41 E-value=2.3e-06 Score=81.02 Aligned_cols=170 Identities=15% Similarity=0.059 Sum_probs=95.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE--EeCCCCHHhhhCCCCEEEEcc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~~~d~~eal~~ADiVIita 117 (279)
+.|||.|+||+|++|++++..|...|+ +|..+|+.... ... .......... .....++.++++++|+||++|
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~--~V~~v~r~~~~-~~~---~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGH--YIIASDWKKNE-HMS---EDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCC--EEEEEEecccc-ccc---cccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 557999999999999999999999998 99999975310 000 0000001110 000112344568999999998
Q ss_pred CCCCCCC---CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC----CchH---HHHHHHHHHhCCCCCCCeeeec
Q 023671 118 GVPRKPG---MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV----NSTV---PIAAEVFKKAGTYDPKKLLGVT 187 (279)
Q Consensus 118 g~~~k~g---~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv----d~~t---~~~~~~~~~~~~~~~~kViG~t 187 (279)
+.....+ ......+..|+.....+++.+++...+.+|...|.-+ .... .+ .+ .......+...+|.+
T Consensus 94 a~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~-~E--~~~~p~~p~s~Yg~s 170 (370)
T PLN02695 94 ADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSL-KE--SDAWPAEPQDAYGLE 170 (370)
T ss_pred cccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCc-Cc--ccCCCCCCCCHHHHH
Confidence 7432111 1123346789999999999998876554444333100 0000 00 00 000012344566665
Q ss_pred chhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671 188 MLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218 (279)
Q Consensus 188 ~lds~R~~~~la~~l~v~~~~V~-~~ViGehg 218 (279)
.....++-...++..+++..-++ ..++|.++
T Consensus 171 K~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~ 202 (370)
T PLN02695 171 KLATEELCKHYTKDFGIECRIGRFHNIYGPFG 202 (370)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEECCccCCCC
Confidence 44444443444566777666665 44788764
No 71
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=98.41 E-value=5.4e-06 Score=75.93 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=73.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhccc-CCCeEEEE----eCCCCHHhhhCCCCEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMD-TGAVVRGF----LGQPQLENALTGMDLVI 114 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~~-~~~~v~~~----~~~~d~~eal~~ADiVI 114 (279)
.+||.|+||+|++|++++..|+.+|+ +|++++++... .....+.... ....++.+ .....+.++++++|+||
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY--TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC--EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 46899999999999999999999998 89888876521 1111121110 01122221 11234567789999999
Q ss_pred EccCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEe
Q 023671 115 IPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLI 157 (279)
Q Consensus 115 itag~~~k~-g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~ 157 (279)
++|+..... .....+.+..|+.....+++.+.+. ... .++++
T Consensus 82 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~ 125 (322)
T PLN02662 82 HTASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVK-RVVVT 125 (322)
T ss_pred EeCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEc
Confidence 999754221 1122356788999999999998876 433 34443
No 72
>PLN00198 anthocyanidin reductase; Provisional
Probab=98.41 E-value=6.4e-06 Score=76.41 Aligned_cols=176 Identities=15% Similarity=0.058 Sum_probs=96.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCEEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL----GQPQLENALTGMDLVI 114 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADiVI 114 (279)
+++||.|+||+|++|++++..|+..|+ +|++++++. ......++.......+++.+. ...++.+.++++|+||
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi 85 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY--AVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF 85 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC--EEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence 356899999999999999999999997 888777654 211111111111011222221 1123456678999999
Q ss_pred EccCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCch-------HHHHHHHHH-----HhCCCCCC
Q 023671 115 IPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-------VPIAAEVFK-----KAGTYDPK 181 (279)
Q Consensus 115 itag~~~k~g~~-r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~-------t~~~~~~~~-----~~~~~~~~ 181 (279)
++|+.......+ ..+++..|+.....+++.+.+...-..++++|.-...- ...+.|-.+ .....++.
T Consensus 86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~ 165 (338)
T PLN00198 86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT 165 (338)
T ss_pred EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence 999743211122 23456889999999999998764222344443211000 000000000 00012334
Q ss_pred CeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671 182 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 217 (279)
Q Consensus 182 kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh 217 (279)
..+|.+.+-..++-...++..+++...++ ..|+|.+
T Consensus 166 ~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~ 202 (338)
T PLN00198 166 WGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPS 202 (338)
T ss_pred chhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCC
Confidence 45665544444444455666777666666 4478875
No 73
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.39 E-value=1.7e-06 Score=85.27 Aligned_cols=104 Identities=23% Similarity=0.327 Sum_probs=72.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hhH--H----hhhhccc---------CCCeEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PGV--T----ADISHMD---------TGAVVRGFLGQP 101 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~-~g~--~----~DL~~~~---------~~~~v~~~~~~~ 101 (279)
+.+||+|||+ |.+|+.+|..++..|+ +|+++|+++ + .+. . ..+.... ...+++. ++
T Consensus 4 ~~~kV~VIGa-G~MG~gIA~~la~aG~--~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~ 77 (503)
T TIGR02279 4 NVVTVAVIGA-GAMGAGIAQVAASAGH--QVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIP---VT 77 (503)
T ss_pred CccEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEE---eC
Confidence 4569999999 9999999999999998 999999986 1 111 0 0111110 0122333 34
Q ss_pred CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 165 (279)
Q Consensus 102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t 165 (279)
++ +++++||+||.+. .++..+.+.+...+.+.+|...+ +.||.+.+-.
T Consensus 78 ~~-~~l~~aDlVIEav--------------~E~~~vK~~vf~~l~~~~~~~~I-lasnTStl~i 125 (503)
T TIGR02279 78 DL-HALADAGLVIEAI--------------VENLEVKKALFAQLEELCPADTI-IASNTSSLSI 125 (503)
T ss_pred CH-HHhCCCCEEEEcC--------------cCcHHHHHHHHHHHHhhCCCCeE-EEECCCCCCH
Confidence 65 5689999999986 34567788888889998865433 4688877544
No 74
>PLN02650 dihydroflavonol-4-reductase
Probab=98.37 E-value=7.1e-06 Score=76.56 Aligned_cols=178 Identities=15% Similarity=0.035 Sum_probs=98.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcc-cCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDL 112 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~-~~~~~v~~~~----~~~d~~eal~~ADi 112 (279)
...++|.|+||+|++|++++..|+..|+ +|++++++.. .....++... .....+..+. ....+.+.++++|+
T Consensus 3 ~~~k~iLVTGatGfIGs~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ 80 (351)
T PLN02650 3 SQKETVCVTGASGFIGSWLVMRLLERGY--TVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTG 80 (351)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHHHHCCC--EEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCE
Confidence 3456999999999999999999999998 8988887651 1111122111 0011222211 11235567889999
Q ss_pred EEEccCCCCCCCCc-hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCch-----HHHHHHHHH---Hh--CCCCCC
Q 023671 113 VIIPAGVPRKPGMT-RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNST-----VPIAAEVFK---KA--GTYDPK 181 (279)
Q Consensus 113 VIitag~~~k~g~~-r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~-----t~~~~~~~~---~~--~~~~~~ 181 (279)
||++|+.......+ ..+.+..|+.....+++.+.+...-..|+++|.....- .+...|-.+ .. ...++.
T Consensus 81 ViH~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~ 160 (351)
T PLN02650 81 VFHVATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTG 160 (351)
T ss_pred EEEeCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhcccccc
Confidence 99999753211112 23567889999999999998765323455444321000 000000000 00 000011
Q ss_pred CeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671 182 KLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218 (279)
Q Consensus 182 kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg 218 (279)
..+|.+.+-...+-...++..|++..-++ +.|+|+..
T Consensus 161 ~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~ 198 (351)
T PLN02650 161 WMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFI 198 (351)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCC
Confidence 24555544444444455666777766666 55888753
No 75
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=98.37 E-value=5e-06 Score=77.15 Aligned_cols=113 Identities=17% Similarity=0.212 Sum_probs=74.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHhhhhcccCCCeEEEE----eCCCCHHhhhCCCCEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGF----LGQPQLENALTGMDLVI 114 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g--~~~DL~~~~~~~~v~~~----~~~~d~~eal~~ADiVI 114 (279)
.++|.|+||+|++|++++..|+..+...+|+++|++.... ...++.. ..+..+ ....++.+++++.|+||
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~----~~~~~v~~Dl~d~~~l~~~~~~iD~Vi 79 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPA----PCLRFFIGDVRDKERLTRALRGVDYVV 79 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCC----CcEEEEEccCCCHHHHHHHHhcCCEEE
Confidence 4689999999999999999998876334899999765221 1111211 122221 11123456678999999
Q ss_pred EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
++||....+ ..+..+.+..|+.....+++.+.+.... .+|++|
T Consensus 80 h~Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~S 124 (324)
T TIGR03589 80 HAAALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVK-RVVALS 124 (324)
T ss_pred ECcccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEe
Confidence 999864322 2234567889999999999999876544 444444
No 76
>PLN02206 UDP-glucuronate decarboxylase
Probab=98.36 E-value=5.3e-06 Score=80.59 Aligned_cols=113 Identities=16% Similarity=0.080 Sum_probs=73.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
+.|||.|+||+||||++++..|+.+|+ +|+.+|.... +....+.+.....+++.+.. +-+..++.++|+||++|+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~--~V~~ld~~~~-~~~~~~~~~~~~~~~~~i~~-D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD--SVIVVDNFFT-GRKENVMHHFSNPNFELIRH-DVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC--EEEEEeCCCc-cchhhhhhhccCCceEEEEC-CccChhhcCCCEEEEeeee
Confidence 347999999999999999999999998 9999986431 10011111001122333221 1123457889999999975
Q ss_pred CC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 120 PR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 120 ~~--k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.. ....+..+.+..|+....++++.+++... .+|++|
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~--r~V~~S 232 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA--RFLLTS 232 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC--EEEEEC
Confidence 32 11223456788999999999999987653 455544
No 77
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.36 E-value=3.4e-06 Score=77.17 Aligned_cols=100 Identities=20% Similarity=0.251 Sum_probs=64.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hh---HHhhhhcc-----cC--------CCeEEEEeCCCCH
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PG---VTADISHM-----DT--------GAVVRGFLGQPQL 103 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g---~~~DL~~~-----~~--------~~~v~~~~~~~d~ 103 (279)
.||+|||+ |.+|..+|..|+..|+ +|.++|+++. .. ...++... .. ..+++. ++++
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~ 75 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGF--QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY---SLDL 75 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCC--cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCcH
Confidence 48999999 9999999999999998 9999999861 11 00111000 00 112332 3467
Q ss_pred HhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCc
Q 023671 104 ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNS 163 (279)
Q Consensus 104 ~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~ 163 (279)
++++++||+||.+.. ++..+.+.+...+.+.++ ++++ ++|...+
T Consensus 76 ~~~~~~aD~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~il--~~~tSt~ 120 (288)
T PRK09260 76 KAAVADADLVIEAVP--------------EKLELKKAVFETADAHAPAECYI--ATNTSTM 120 (288)
T ss_pred HHhhcCCCEEEEecc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCC
Confidence 788999999999863 224455566667777764 4443 3555543
No 78
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.36 E-value=2.5e-06 Score=78.13 Aligned_cols=101 Identities=23% Similarity=0.285 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH-Hh----hhh----cccC--------CCeEEEEeCCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV-TA----DIS----HMDT--------GAVVRGFLGQPQ 102 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~-~~----DL~----~~~~--------~~~v~~~~~~~d 102 (279)
.+||+|||+ |.+|..+|..++..|+ +|+++|+++. ... .. .+. .... ..+++. +++
T Consensus 4 ~~kI~vIGa-G~mG~~iA~~la~~G~--~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~ 77 (292)
T PRK07530 4 IKKVGVIGA-GQMGNGIAHVCALAGY--DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST---ATD 77 (292)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe---eCC
Confidence 469999999 9999999999999998 9999999861 111 11 010 0000 012332 346
Q ss_pred HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCch
Q 023671 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 164 (279)
Q Consensus 103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~ 164 (279)
+ +++++||+||++.. ++..+.+.+.+.+.+.+ |++++ +||.+.+-
T Consensus 78 ~-~~~~~aD~Vieavp--------------e~~~~k~~~~~~l~~~~~~~~ii--~s~ts~~~ 123 (292)
T PRK07530 78 L-EDLADCDLVIEAAT--------------EDETVKRKIFAQLCPVLKPEAIL--ATNTSSIS 123 (292)
T ss_pred H-HHhcCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCcEE--EEcCCCCC
Confidence 5 56899999999862 12344556666777776 45654 35666543
No 79
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.34 E-value=3.9e-06 Score=77.44 Aligned_cols=102 Identities=24% Similarity=0.303 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcc-------c----CCCeEEEEeCCCCHHhhh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHM-------D----TGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~-------~----~~~~v~~~~~~~d~~eal 107 (279)
.+||+|||+ |.+|..++..|+..|+ +|+++|.++. ......+.+. . ...++.. ++++.+++
T Consensus 4 ~~~I~vIGa-G~mG~~iA~~l~~~g~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~ 77 (311)
T PRK06130 4 IQNLAIIGA-GTMGSGIAALFARKGL--QVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM---EAGLAAAV 77 (311)
T ss_pred ccEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE---eCCHHHHh
Confidence 458999999 9999999999999998 9999998761 1111111000 0 0011222 34666779
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCC-CceEEEecCCCCch
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCP-NATVNLISNPVNST 164 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p-~a~viv~TNPvd~~ 164 (279)
++||+||++.. .......++...+...++ +.+| +||...+-
T Consensus 78 ~~aDlVi~av~--------------~~~~~~~~v~~~l~~~~~~~~ii--~s~tsg~~ 119 (311)
T PRK06130 78 SGADLVIEAVP--------------EKLELKRDVFARLDGLCDPDTIF--ATNTSGLP 119 (311)
T ss_pred ccCCEEEEecc--------------CcHHHHHHHHHHHHHhCCCCcEE--EECCCCCC
Confidence 99999999862 122345556666776664 4443 35555543
No 80
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.34 E-value=6.6e-06 Score=80.80 Aligned_cols=125 Identities=19% Similarity=0.238 Sum_probs=90.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC----CCCHHhhhCC--CC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG----QPQLENALTG--MD 111 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~----~~d~~eal~~--AD 111 (279)
..+.|.|+||+|++|+.+...++..+ ..+|+++|.+| ......++.+.....+++.+.+ ...+++++++ .|
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~-p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kvd 327 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFN-PKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKVD 327 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcC-CCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCCc
Confidence 34689999999999999999888876 46999999998 3334445554322233333221 1234567888 99
Q ss_pred EEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec----CCCCchH
Q 023671 112 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS----NPVNSTV 165 (279)
Q Consensus 112 iVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T----NPvd~~t 165 (279)
+|+++|+.-.-|- .+..+-...|+-..+++++...++.-+.++++.| ||.|+|-
T Consensus 328 ~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iSTDKAV~PtNvmG 387 (588)
T COG1086 328 IVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLISTDKAVNPTNVMG 387 (588)
T ss_pred eEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEecCcccCCchHhh
Confidence 9999997543332 3456778899999999999999998887777765 6776664
No 81
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=98.33 E-value=1.1e-05 Score=73.26 Aligned_cols=164 Identities=15% Similarity=0.060 Sum_probs=92.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHhhhhcccCCCeEEEEe----CCCCHHhhhCC--CCEE
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISHMDTGAVVRGFL----GQPQLENALTG--MDLV 113 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~--ADiV 113 (279)
||.|+||+|++|.+++..|+..+...+|+++|..... ....++... ..+..+. ..+++.+++++ +|+|
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~d~v 77 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDN---PRYRFVKGDIGDRELVSRLFTEHQPDAV 77 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccC---CCcEEEEcCCcCHHHHHHHHhhcCCCEE
Confidence 5889999999999999988887633389999864311 111122111 1222211 11234556676 8999
Q ss_pred EEccCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC------C--chHHHHHHHHHHhCCCCCCCe
Q 023671 114 IIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV------N--STVPIAAEVFKKAGTYDPKKL 183 (279)
Q Consensus 114 Iitag~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv------d--~~t~~~~~~~~~~~~~~~~kV 183 (279)
|++|+.... ........+..|+.....+++.+.+...+..++.+|... + ..+ ......+...
T Consensus 78 i~~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~--------e~~~~~~~~~ 149 (317)
T TIGR01181 78 VHFAAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFT--------ETTPLAPSSP 149 (317)
T ss_pred EEcccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcC--------CCCCCCCCCc
Confidence 999975421 112234567889999999999998865554555554311 0 011 0111223345
Q ss_pred eeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671 184 LGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 217 (279)
Q Consensus 184 iG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh 217 (279)
+|.+.....++-..+++..+++..-++ ..++|..
T Consensus 150 Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~ 184 (317)
T TIGR01181 150 YSASKAASDHLVRAYHRTYGLPALITRCSNNYGPY 184 (317)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCC
Confidence 555443344444445566666655554 3466653
No 82
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=98.33 E-value=7e-06 Score=83.44 Aligned_cols=178 Identities=15% Similarity=0.061 Sum_probs=107.3
Q ss_pred cchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CC
Q 023671 24 QNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QP 101 (279)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~ 101 (279)
.+.+-||-.|... +.|||.|+||+||+|++++..|+.. ++ +|+.+|++...- .++.. ...++.+.+ -.
T Consensus 301 g~~~~~~~~~~~~---~~~~VLVTGatGFIGs~Lv~~Ll~~~g~--~V~~l~r~~~~~--~~~~~---~~~~~~~~gDl~ 370 (660)
T PRK08125 301 GARLNSKPACSAK---RRTRVLILGVNGFIGNHLTERLLRDDNY--EVYGLDIGSDAI--SRFLG---HPRFHFVEGDIS 370 (660)
T ss_pred CCEecccchhhhh---cCCEEEEECCCchHHHHHHHHHHhCCCc--EEEEEeCCchhh--hhhcC---CCceEEEecccc
Confidence 3457788888766 6779999999999999999999874 67 999999865210 11111 112222111 11
Q ss_pred C----HHhhhCCCCEEEEccCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC-C-----C-chHHHH
Q 023671 102 Q----LENALTGMDLVIIPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP-V-----N-STVPIA 168 (279)
Q Consensus 102 d----~~eal~~ADiVIitag~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP-v-----d-~~t~~~ 168 (279)
| +.++++++|+||++|+.... ......+.+..|+....++++.+.+.. . .+|++|.. + + .++
T Consensus 371 d~~~~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~~~~--- 445 (660)
T PRK08125 371 IHSEWIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDKYFD--- 445 (660)
T ss_pred CcHHHHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCCCcC---
Confidence 1 34567899999999975432 222345677889999999999999875 3 34444331 1 0 010
Q ss_pred HHHHHH---hCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCC
Q 023671 169 AEVFKK---AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGH 217 (279)
Q Consensus 169 ~~~~~~---~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGeh 217 (279)
|-... ...-++...+|.+.+-..++-...++..+++...++ ..|+|.+
T Consensus 446 -E~~~~~~~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~ 497 (660)
T PRK08125 446 -EDTSNLIVGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPR 497 (660)
T ss_pred -ccccccccCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCC
Confidence 00000 000012235777655455555555677787776676 4478875
No 83
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=98.32 E-value=5.3e-06 Score=81.90 Aligned_cols=119 Identities=20% Similarity=0.273 Sum_probs=76.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--c-hh--HHhh----hhccc---------CCCeEEEEeCCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--T-PG--VTAD----ISHMD---------TGAVVRGFLGQPQ 102 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~-~g--~~~D----L~~~~---------~~~~v~~~~~~~d 102 (279)
..||+|||+ |.+|..+|..++..|+ +|+++|+++ + .+ ...+ +.... ...++.. +++
T Consensus 7 i~~V~VIGa-G~MG~gIA~~la~aG~--~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~---~~~ 80 (507)
T PRK08268 7 IATVAVIGA-GAMGAGIAQVAAQAGH--TVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRP---VEA 80 (507)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE---eCC
Confidence 358999999 9999999999999999 999999987 1 11 1111 11100 0122443 346
Q ss_pred HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCC
Q 023671 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPK 181 (279)
Q Consensus 103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~ 181 (279)
+ +++++||+||.+. .++..+.+.+...+++.+ |++++ +||.+.+-..-+ ..... .++
T Consensus 81 ~-~~~~~aDlViEav--------------~E~~~vK~~vf~~l~~~~~~~ail--asntStl~i~~l----a~~~~-~p~ 138 (507)
T PRK08268 81 L-ADLADCDLVVEAI--------------VERLDVKQALFAQLEAIVSPDCIL--ATNTSSLSITAI----AAALK-HPE 138 (507)
T ss_pred H-HHhCCCCEEEEcC--------------cccHHHHHHHHHHHHhhCCCCcEE--EECCCCCCHHHH----HhhcC-Ccc
Confidence 5 5689999999986 345677778888899887 45544 466655433211 22222 356
Q ss_pred Ceeeec
Q 023671 182 KLLGVT 187 (279)
Q Consensus 182 kViG~t 187 (279)
|++|+-
T Consensus 139 r~~G~h 144 (507)
T PRK08268 139 RVAGLH 144 (507)
T ss_pred cEEEEe
Confidence 788873
No 84
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=98.30 E-value=1.3e-05 Score=74.10 Aligned_cols=102 Identities=25% Similarity=0.273 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHh--------hhhcccC---------CCeEEEEeCCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA--------DISHMDT---------GAVVRGFLGQPQ 102 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~--------DL~~~~~---------~~~v~~~~~~~d 102 (279)
++||+|||+ |.+|++++..|+..|+ +|+++|+++. ..... .+..... ..+++. +++
T Consensus 2 ~~~V~VIG~-G~mG~~iA~~la~~G~--~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~---~~~ 75 (308)
T PRK06129 2 MGSVAIIGA-GLIGRAWAIVFARAGH--EVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRV---TDS 75 (308)
T ss_pred CcEEEEECc-cHHHHHHHHHHHHCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEE---ECc
Confidence 468999998 9999999999999998 9999999861 11100 1111110 112333 347
Q ss_pred HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 163 (279)
Q Consensus 103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~ 163 (279)
+.+++++||+|+.+.. ++....+.+...+.+..++..++ .||....
T Consensus 76 ~~~a~~~ad~Vi~avp--------------e~~~~k~~~~~~l~~~~~~~~ii-~ssts~~ 121 (308)
T PRK06129 76 LADAVADADYVQESAP--------------ENLELKRALFAELDALAPPHAIL-ASSTSAL 121 (308)
T ss_pred HHHhhCCCCEEEECCc--------------CCHHHHHHHHHHHHHhCCCcceE-EEeCCCC
Confidence 7778999999999862 12344555666677777655444 3555443
No 85
>PLN02214 cinnamoyl-CoA reductase
Probab=98.29 E-value=1.2e-05 Score=75.13 Aligned_cols=109 Identities=14% Similarity=0.039 Sum_probs=73.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h-HHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G-VTADISHMDTGAVVRGFL----GQPQLENALTGMDL 112 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g-~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADi 112 (279)
++++|.|+||+|++|++++..|+.+|+ +|+.++++... . ....+... ...+..+. ...++.++++++|+
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~d~~~~~~~~~~~d~ 84 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGY--TVKGTVRNPDDPKNTHLRELEGG--KERLILCKADLQDYEALKAAIDGCDG 84 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcC--EEEEEeCCchhhhHHHHHHhhCC--CCcEEEEecCcCChHHHHHHHhcCCE
Confidence 356899999999999999999999998 89988875421 1 11112111 11222211 12345677899999
Q ss_pred EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155 (279)
Q Consensus 113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi 155 (279)
||++|+... ....+.+..|+.....+++.+.+.....+|+
T Consensus 85 Vih~A~~~~---~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~ 124 (342)
T PLN02214 85 VFHTASPVT---DDPEQMVEPAVNGAKFVINAAAEAKVKRVVI 124 (342)
T ss_pred EEEecCCCC---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEE
Confidence 999998542 2235667889999999999998765443443
No 86
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=98.28 E-value=7.9e-06 Score=74.10 Aligned_cols=168 Identities=17% Similarity=0.087 Sum_probs=95.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC-CEEEEccCCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM-DLVIIPAGVPR 121 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A-DiVIitag~~~ 121 (279)
+|.|+||+||+|++++..|++.|+ +|+.+|.........+ .+.. ...... .......+.+++. |.||++|+...
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~-~~~~-~~~~d~-~~~~~~~~~~~~~~d~vih~aa~~~ 76 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH--DVRGLDRLRDGLDPLL-SGVE-FVVLDL-TDRDLVDELAKGVPDAVIHLAAQSS 76 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC--eEEEEeCCCccccccc-cccc-eeeecc-cchHHHHHHHhcCCCEEEEccccCc
Confidence 599999999999999999999988 9999998652111111 0100 000000 0001234456677 99999998654
Q ss_pred CCCCch---hhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHH----HHHHHHHHhCCCCCCCeeeecchhHHHH
Q 023671 122 KPGMTR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVP----IAAEVFKKAGTYDPKKLLGVTMLDVVRA 194 (279)
Q Consensus 122 k~g~~r---~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~----~~~~~~~~~~~~~~~kViG~t~lds~R~ 194 (279)
.++..+ .++...|+...+++++...+.... .++..|.-...-.. .+.|-. ....| ...+|.+.+...+.
T Consensus 77 ~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~-~~v~~ss~~~~~~~~~~~~~~E~~--~~~~p-~~~Yg~sK~~~E~~ 152 (314)
T COG0451 77 VPDSNASDPAEFLDVNVDGTLNLLEAARAAGVK-RFVFASSVSVVYGDPPPLPIDEDL--GPPRP-LNPYGVSKLAAEQL 152 (314)
T ss_pred hhhhhhhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCCCceECCCCCCCCccccc--CCCCC-CCHHHHHHHHHHHH
Confidence 443322 357889999999999999983333 33333321101000 000100 01111 12456665544444
Q ss_pred HHHHHHHcCCCCCCCc-ceeecCCCC
Q 023671 195 NTFVAEVLGLDPRDVD-VPVVGGHAG 219 (279)
Q Consensus 195 ~~~la~~l~v~~~~V~-~~ViGehg~ 219 (279)
-...++..+++..-++ ..++|.+..
T Consensus 153 ~~~~~~~~~~~~~ilR~~~vyGp~~~ 178 (314)
T COG0451 153 LRAYARLYGLPVVILRPFNVYGPGDK 178 (314)
T ss_pred HHHHHHHhCCCeEEEeeeeeeCCCCC
Confidence 4444445577887777 458887654
No 87
>CHL00194 ycf39 Ycf39; Provisional
Probab=98.28 E-value=5.8e-06 Score=76.30 Aligned_cols=107 Identities=11% Similarity=0.071 Sum_probs=70.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~ 120 (279)
|||.|+||+|++|++++..|+..|+ +|..++++.... ..+.+... ..+.. .....++.++++++|+||++++..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~--~V~~l~R~~~~~--~~l~~~~v-~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~ 75 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY--QVRCLVRNLRKA--SFLKEWGA-ELVYGDLSLPETLPPSFKGVTAIIDASTSR 75 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--eEEEEEcChHHh--hhHhhcCC-EEEECCCCCHHHHHHHHCCCCEEEECCCCC
Confidence 5899999999999999999999998 999998864211 11111110 01111 111234567899999999987543
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv 156 (279)
.. ...+....|......+++.+++.+.+-+|.+
T Consensus 76 ~~---~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~ 108 (317)
T CHL00194 76 PS---DLYNAKQIDWDGKLALIEAAKAAKIKRFIFF 108 (317)
T ss_pred CC---CccchhhhhHHHHHHHHHHHHHcCCCEEEEe
Confidence 21 1233456688888899999988765544433
No 88
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=98.27 E-value=1.9e-05 Score=73.58 Aligned_cols=169 Identities=15% Similarity=0.060 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE----eCCCCHHhhhC--CCCEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----LGQPQLENALT--GMDLVI 114 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~~~d~~eal~--~ADiVI 114 (279)
|+||.|+||+|++|++++..|..+|. ..++++|..+..+....+.+......+... ...+++.++++ +.|+||
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vi 79 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS-DAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVM 79 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC-CEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEE
Confidence 35899999999999999999998885 246677764321211112111001112111 11123344565 489999
Q ss_pred EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhC-------CC-ceEEEecCCC---------CchHHHHHHHHHHh
Q 023671 115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPV---------NSTVPIAAEVFKKA 175 (279)
Q Consensus 115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~-------p~-a~viv~TNPv---------d~~t~~~~~~~~~~ 175 (279)
++||..... .......+..|+.....+++.+.+.. +. ..++.+|... +.++ ..
T Consensus 80 h~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~--------E~ 151 (355)
T PRK10217 80 HLAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFT--------ET 151 (355)
T ss_pred ECCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcC--------CC
Confidence 999864321 11234567889999999999987642 11 2444444321 0111 00
Q ss_pred CCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671 176 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218 (279)
Q Consensus 176 ~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg 218 (279)
....+...+|.+.+...++-...++..+++..-++ ..++|.+.
T Consensus 152 ~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~ 195 (355)
T PRK10217 152 TPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYH 195 (355)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCC
Confidence 11233445666655555555666777777665555 45778654
No 89
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=98.26 E-value=6.5e-06 Score=75.48 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHH--------hhhhcccC---------CCeEEEEeCCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVT--------ADISHMDT---------GAVVRGFLGQPQ 102 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~--------~DL~~~~~---------~~~v~~~~~~~d 102 (279)
.+||+|||+ |.+|..+|..++..|+ +|+++|.++.. ..+ .++.+... ...+.. +++
T Consensus 4 ~~~V~vIG~-G~mG~~iA~~l~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~ 77 (295)
T PLN02545 4 IKKVGVVGA-GQMGSGIAQLAAAAGM--DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC---TTN 77 (295)
T ss_pred cCEEEEECC-CHHHHHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe---eCC
Confidence 358999999 9999999999999997 99999997611 110 11211100 011222 335
Q ss_pred HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCch
Q 023671 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNST 164 (279)
Q Consensus 103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~ 164 (279)
+ +++++||+||.+. .++..+...+...+.+.. |++++ +||-..+-
T Consensus 78 ~-~~~~~aD~Vieav--------------~e~~~~k~~v~~~l~~~~~~~~il--~s~tS~i~ 123 (295)
T PLN02545 78 L-EELRDADFIIEAI--------------VESEDLKKKLFSELDRICKPSAIL--ASNTSSIS 123 (295)
T ss_pred H-HHhCCCCEEEEcC--------------ccCHHHHHHHHHHHHhhCCCCcEE--EECCCCCC
Confidence 4 6799999999986 223455666777777766 45544 46666543
No 90
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=98.26 E-value=1e-05 Score=75.44 Aligned_cols=109 Identities=17% Similarity=0.133 Sum_probs=69.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCC-----CCHHhhhCCCCEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-----PQLENALTGMDLVI 114 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~-----~d~~eal~~ADiVI 114 (279)
||||.|+||+|++|++++..|+.. ++ +|+.+|+... ...++... ..++.+... ..+.++++++|+||
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~--~V~~~~r~~~--~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~d~Vi 73 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDW--EVYGMDMQTD--RLGDLVNH---PRMHFFEGDITINKEWIEYHVKKCDVIL 73 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCC--eEEEEeCcHH--HHHHhccC---CCeEEEeCCCCCCHHHHHHHHcCCCEEE
Confidence 469999999999999999999875 56 9999997431 11111111 122222110 12335578999999
Q ss_pred EccCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 115 IPAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 115 itag~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
++|+.... ...+....+..|+.....+++.+++.. . .+|.+|
T Consensus 74 H~aa~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~S 117 (347)
T PRK11908 74 PLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-K-HLVFPS 117 (347)
T ss_pred ECcccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-C-eEEEEe
Confidence 99875321 122334456778888889999888754 3 455444
No 91
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=98.25 E-value=1.1e-05 Score=79.46 Aligned_cols=103 Identities=15% Similarity=0.146 Sum_probs=68.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhh--------hh---ccc--CCCeEEEEeCCCCHHhhh
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTAD--------IS---HMD--TGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~D--------L~---~~~--~~~~v~~~~~~~d~~eal 107 (279)
+||+|||+ |.+|+.+|..|+..|+ +|.++|+++.. ....+ +. ... ...+++. ++++.+++
T Consensus 5 ~kIavIG~-G~MG~~iA~~la~~G~--~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~---~~~~~ea~ 78 (495)
T PRK07531 5 MKAACIGG-GVIGGGWAARFLLAGI--DVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF---CASLAEAV 78 (495)
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCC--eEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe---eCCHHHHh
Confidence 58999999 9999999999999998 99999998621 11101 00 000 0011332 34677889
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 165 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t 165 (279)
++||+||.+.. ++..+.+.+...+.+.+|+.. ++.||.+++..
T Consensus 79 ~~aD~Vieavp--------------e~~~vk~~l~~~l~~~~~~~~-iI~SsTsgi~~ 121 (495)
T PRK07531 79 AGADWIQESVP--------------ERLDLKRRVLAEIDAAARPDA-LIGSSTSGFLP 121 (495)
T ss_pred cCCCEEEEcCc--------------CCHHHHHHHHHHHHhhCCCCc-EEEEcCCCCCH
Confidence 99999999862 234556666677777776443 34677777554
No 92
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.23 E-value=4.1e-06 Score=63.59 Aligned_cols=94 Identities=21% Similarity=0.243 Sum_probs=61.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhCC-CCcEEEEE-eCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINP-LVSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~-D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~ 120 (279)
||+|||+ |.+|+.++..|...+ ...+|.++ ++++. ...++.... . +..+ ..+..+++++||+||++.-
T Consensus 1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~--~~~~~~~~~-~--~~~~--~~~~~~~~~~advvilav~-- 70 (96)
T PF03807_consen 1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPE--KAAELAKEY-G--VQAT--ADDNEEAAQEADVVILAVK-- 70 (96)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHH--HHHHHHHHC-T--TEEE--SEEHHHHHHHTSEEEE-S---
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHH--HHHHHHHhh-c--cccc--cCChHHhhccCCEEEEEEC--
Confidence 7999998 999999999999888 23388866 87651 222222211 1 1111 1145788999999999872
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP 160 (279)
| ..+.++++.+....++..+|-++||
T Consensus 71 --p------------~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 --P------------QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp --G------------GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred --H------------HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 2 1255666677555578888887876
No 93
>PLN02572 UDP-sulfoquinovose synthase
Probab=98.21 E-value=1.7e-05 Score=77.08 Aligned_cols=178 Identities=15% Similarity=0.149 Sum_probs=99.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hh------------HHhhhh---cccCCCeEEEEeC
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PG------------VTADIS---HMDTGAVVRGFLG 99 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g------------~~~DL~---~~~~~~~v~~~~~ 99 (279)
..+++||.|+||+||+|++++..|+.+|+ +|+++|.... .. ....+. +.. ...++.+.+
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~v~~v~~ 120 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY--EVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVS-GKEIELYVG 120 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeccccccccccccccccccccchHHHHHHHHHhh-CCcceEEEC
Confidence 34567999999999999999999999997 9999985320 00 000010 000 112222211
Q ss_pred ----CCCHHhhhC--CCCEEEEccCCCCCC-CC-ch---hhHHHhhHHHHHHHHHHHHHhCCCceEEEecC------CCC
Q 023671 100 ----QPQLENALT--GMDLVIIPAGVPRKP-GM-TR---DDLFNINAGIVRTLCEGIAKCCPNATVNLISN------PVN 162 (279)
Q Consensus 100 ----~~d~~eal~--~ADiVIitag~~~k~-g~-~r---~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN------Pvd 162 (279)
...+.++++ ++|+||++|+....+ .. +. ...+..|+.....+++.+.+.+.+..++.+|. |-+
T Consensus 121 Dl~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~ 200 (442)
T PLN02572 121 DICDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNI 200 (442)
T ss_pred CCCCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCC
Confidence 112334455 489999998653211 11 11 23356799999999999998876544544331 110
Q ss_pred chH--HH-HHHHHHHh---CCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671 163 STV--PI-AAEVFKKA---GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218 (279)
Q Consensus 163 ~~t--~~-~~~~~~~~---~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg 218 (279)
.+. ++ ..+..... .-..+...+|.+.+-...+-...++..|++..-++ ..|+|.+.
T Consensus 201 ~~~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~ 263 (442)
T PLN02572 201 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 263 (442)
T ss_pred CCcccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCC
Confidence 000 00 00000000 01223457888765445555566777788777776 55889764
No 94
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=98.21 E-value=3.1e-05 Score=74.44 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=74.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc----------------CCCeEEEEeCCCCHHh
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLEN 105 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~~~d~~e 105 (279)
|||+|||. |.+|..+|..|+..|+ +|+++|+++.+ ..++.... ...+++. ++++.+
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~--~V~~~d~~~~~--v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~---~~~~~~ 72 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGH--EVTGVDIDQEK--VDKLNKGKSPIYEPGLDELLAKALAAGRLRA---TTDYED 72 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCC--eEEEEECCHHH--HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE---ECCHHH
Confidence 58999998 9999999999999998 99999997621 11122110 0112332 346667
Q ss_pred hhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCCchHHHHHHHHHH
Q 023671 106 ALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIAAEVFKK 174 (279)
Q Consensus 106 al~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd~~t~~~~~~~~~ 174 (279)
++++||+||++.+.|..... ..+...+.+.++.+.+.. ++.+++.. |-|.+....+...+..+
T Consensus 73 ~~~~advvii~vpt~~~~~~------~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~ 137 (411)
T TIGR03026 73 AIRDADVIIICVPTPLKEDG------SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILER 137 (411)
T ss_pred HHhhCCEEEEEeCCCCCCCC------CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHh
Confidence 89999999999987754321 123444556666666553 45554443 45666555554344433
No 95
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=98.20 E-value=1.3e-05 Score=73.15 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=71.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~ 120 (279)
|||.|+||+|++|++++..|+..|+ +|+++|++.... .++.+... ..+.. .....++.++++++|+||++++..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~--~V~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~ 75 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE--EVRVLVRPTSDR--RNLEGLDV-EIVEGDLRDPASLRKAVAGCRALFHVAADY 75 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC--EEEEEEecCccc--cccccCCc-eEEEeeCCCHHHHHHHHhCCCEEEEeceec
Confidence 4899999999999999999999997 999999865211 11111110 01111 111123556788999999998753
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi 155 (279)
.....+..+....|+.....+++.+.+.....+|.
T Consensus 76 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~ 110 (328)
T TIGR03466 76 RLWAPDPEEMYAANVEGTRNLLRAALEAGVERVVY 110 (328)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 22233445677889999999999888765443443
No 96
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=98.18 E-value=2.8e-05 Score=72.39 Aligned_cols=175 Identities=14% Similarity=0.086 Sum_probs=95.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE----eCCCCHHhhhC--CCCEEEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----LGQPQLENALT--GMDLVII 115 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~~~d~~eal~--~ADiVIi 115 (279)
|||.|+||+|++|++++..|+..|. ..++.+|.....+....+.+......+..+ ...+++.++++ ++|+||+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih 79 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ-DSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMH 79 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC-CeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEE
Confidence 5899999999999999999998875 246667754311111111111001112211 11123344554 4899999
Q ss_pred ccCCCCC--CCCchhhHHHhhHHHHHHHHHHHHHhC-------CC-ceEEEecCCCCchHHHH--H--------HHHHHh
Q 023671 116 PAGVPRK--PGMTRDDLFNINAGIVRTLCEGIAKCC-------PN-ATVNLISNPVNSTVPIA--A--------EVFKKA 175 (279)
Q Consensus 116 tag~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~-------p~-a~viv~TNPvd~~t~~~--~--------~~~~~~ 175 (279)
+|+.... ......+.+..|+.....+++.+.++. .. ..++.+|-.. +..... - ..+.+.
T Consensus 80 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~-vyg~~~~~~~~~~~~~~~~~~E~ 158 (352)
T PRK10084 80 LAAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDE-VYGDLPHPDEVENSEELPLFTET 158 (352)
T ss_pred CCcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchh-hcCCCCccccccccccCCCcccc
Confidence 9986421 112235678899999999999998751 11 2344443211 000000 0 000001
Q ss_pred CCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671 176 GTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218 (279)
Q Consensus 176 ~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg 218 (279)
..+.+...+|.+.....++-..+++.++++...++ ..|+|++.
T Consensus 159 ~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~ 202 (352)
T PRK10084 159 TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYH 202 (352)
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCc
Confidence 12334567777665555555556777787766665 44888763
No 97
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.14 E-value=3.1e-05 Score=74.09 Aligned_cols=113 Identities=19% Similarity=0.233 Sum_probs=68.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc------------c--CCCeEEEEeCCCCHHhhh
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM------------D--TGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~------------~--~~~~v~~~~~~~d~~eal 107 (279)
|||+|||+ |.||..+|..++. |+ +|+.+|+++.+ ...+... . ...++.. +.+..++.
T Consensus 1 mkI~VIGl-GyvGl~~A~~lA~-G~--~VigvD~d~~k--v~~l~~g~~~~~e~~l~~~l~~~~~~l~~---t~~~~~~~ 71 (388)
T PRK15057 1 MKITISGT-GYVGLSNGLLIAQ-NH--EVVALDILPSR--VAMLNDRISPIVDKEIQQFLQSDKIHFNA---TLDKNEAY 71 (388)
T ss_pred CEEEEECC-CHHHHHHHHHHHh-CC--cEEEEECCHHH--HHHHHcCCCCCCCcCHHHHHHhCCCcEEE---ecchhhhh
Confidence 58999998 9999999977764 76 99999998621 1111110 0 0112222 33556778
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE-EecCCCCchHHHH
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN-LISNPVNSTVPIA 168 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi-v~TNPvd~~t~~~ 168 (279)
++||+||++.+.|....... .+...+++.++.|.+..|+.+++ -.|-|.+..-.+.
T Consensus 72 ~~ad~vii~Vpt~~~~k~~~-----~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~ 128 (388)
T PRK15057 72 RDADYVIIATPTDYDPKTNY-----FNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMH 128 (388)
T ss_pred cCCCEEEEeCCCCCccCCCC-----cChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHH
Confidence 99999999987663221111 23344555556555544555444 3467777665544
No 98
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.14 E-value=5.2e-05 Score=69.49 Aligned_cols=162 Identities=16% Similarity=0.097 Sum_probs=106.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEE-EeCCCCHHhhh--CCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRG-FLGQPQLENAL--TGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal--~~ADiVIita 117 (279)
|+|.|+|++|++|||.+..|++.|+ +++++|... -...+.+-.. ...+.+ +....-+.+.+ ...|.||+.|
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~--~vvV~DNL~~g~~~~v~~~~---~~f~~gDi~D~~~L~~vf~~~~idaViHFA 75 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGH--EVVVLDNLSNGHKIALLKLQ---FKFYEGDLLDRALLTAVFEENKIDAVVHFA 75 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCC--eEEEEecCCCCCHHHhhhcc---CceEEeccccHHHHHHHHHhcCCCEEEECc
Confidence 5899999999999999999999999 999999865 1111111110 011111 00000122222 4789999998
Q ss_pred CCCCCCCC---chhhHHHhhHHHHHHHHHHHHHhCCCceEEEec-----CCCC-chHHHHHHHHHHhCCCCCCCeeeecc
Q 023671 118 GVPRKPGM---TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-----NPVN-STVPIAAEVFKKAGTYDPKKLLGVTM 188 (279)
Q Consensus 118 g~~~k~g~---~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T-----NPvd-~~t~~~~~~~~~~~~~~~~kViG~t~ 188 (279)
|...- |+ ..+.++..|+--...+++.+.+.+.+.+|+..| +|.. .++ | ..-..|.+-+|-+.
T Consensus 76 a~~~V-gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~----E----~~~~~p~NPYG~sK 146 (329)
T COG1087 76 ASISV-GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPIS----E----TSPLAPINPYGRSK 146 (329)
T ss_pred ccccc-chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccC----C----CCCCCCCCcchhHH
Confidence 75321 22 346788999999999999999999887765442 4433 221 1 12344678889888
Q ss_pred hhHHHHHHHHHHHcCCCCCCCcce-eecCC
Q 023671 189 LDVVRANTFVAEVLGLDPRDVDVP-VVGGH 217 (279)
Q Consensus 189 lds~R~~~~la~~l~v~~~~V~~~-ViGeh 217 (279)
|-+.++.+-+++..+....-++-+ +.|-|
T Consensus 147 lm~E~iL~d~~~a~~~~~v~LRYFN~aGA~ 176 (329)
T COG1087 147 LMSEEILRDAAKANPFKVVILRYFNVAGAC 176 (329)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecccccCC
Confidence 888888888888888665555433 66666
No 99
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=98.12 E-value=0.00011 Score=74.67 Aligned_cols=180 Identities=14% Similarity=0.012 Sum_probs=95.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC---HHhhh--CCCC
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TGMD 111 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal--~~AD 111 (279)
|-+++||.|+||+||+|++++..|+..+...+|+.+|..........+........++.+.+ -.| +.+.+ .++|
T Consensus 3 ~~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D 82 (668)
T PLN02260 3 TYEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGID 82 (668)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCC
Confidence 45678999999999999999999988743338999997431111111111101122332211 112 11222 6899
Q ss_pred EEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHH-H--HHHhCCCCCCCeeee
Q 023671 112 LVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAE-V--FKKAGTYDPKKLLGV 186 (279)
Q Consensus 112 iVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~-~--~~~~~~~~~~kViG~ 186 (279)
+||++|+...... ....++...|+.....+++.+++.+.-..+|.+|.-. +....-.. . ........+...+|.
T Consensus 83 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~-vyg~~~~~~~~~~~E~~~~~p~~~Y~~ 161 (668)
T PLN02260 83 TIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDE-VYGETDEDADVGNHEASQLLPTNPYSA 161 (668)
T ss_pred EEEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchH-HhCCCccccccCccccCCCCCCCCcHH
Confidence 9999998643211 1234567889999999999998876323445444210 00000000 0 000001112344555
Q ss_pred cchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671 187 TMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218 (279)
Q Consensus 187 t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg 218 (279)
+.+...++-...++..+++..-++ ..|+|.+.
T Consensus 162 sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~ 194 (668)
T PLN02260 162 TKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQ 194 (668)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEECcccccCcCC
Confidence 554444444444555666655555 44777653
No 100
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=98.09 E-value=7.8e-05 Score=68.58 Aligned_cols=116 Identities=18% Similarity=0.118 Sum_probs=72.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhc-ccCCCeEEEE----eCCCCHHhhhCCCCEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISH-MDTGAVVRGF----LGQPQLENALTGMDLVI 114 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~-~~~~~~v~~~----~~~~d~~eal~~ADiVI 114 (279)
.++|.|+||+|++|++++..|+..|+ +|++.+++... .....+.. .....++..+ ....++.+++++.|+||
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi 82 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY--TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVF 82 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC--EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEE
Confidence 45899999999999999999999998 88888766521 11111111 0101122221 11223456678999999
Q ss_pred EccCCCCCC-C-CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 115 IPAGVPRKP-G-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 115 itag~~~k~-g-~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
++|+..... . ......+..|+.....+++.+.+......|+++|
T Consensus 83 h~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~S 128 (325)
T PLN02989 83 HTASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTS 128 (325)
T ss_pred EeCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEec
Confidence 999854211 1 1123566789999999999888753223444443
No 101
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=98.07 E-value=3.3e-05 Score=71.66 Aligned_cols=112 Identities=16% Similarity=0.006 Sum_probs=70.4
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcc--cCCCeEEEEe----CCCCHHhhh
Q 023671 37 GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHM--DTGAVVRGFL----GQPQLENAL 107 (279)
Q Consensus 37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~--~~~~~v~~~~----~~~d~~eal 107 (279)
|+.+.++|.|+||+|++|++++..|+..|+ +|+++|.++. ......+... .....+.... ...++.+++
T Consensus 2 ~~~~~~~vlVTGatGfiG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~ 79 (340)
T PLN02653 2 GDPPRKVALITGITGQDGSYLTEFLLSKGY--EVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWL 79 (340)
T ss_pred CCCCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHH
Confidence 567778999999999999999999999998 9999987541 1111111100 0011122211 111233445
Q ss_pred CC--CCEEEEccCCCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCC
Q 023671 108 TG--MDLVIIPAGVPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCP 150 (279)
Q Consensus 108 ~~--ADiVIitag~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p 150 (279)
++ .|+||++|+...... ......+..|+.....+++.+.+...
T Consensus 80 ~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~ 126 (340)
T PLN02653 80 DDIKPDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQ 126 (340)
T ss_pred HHcCCCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhcc
Confidence 54 599999998643211 12234456788888999999988764
No 102
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=98.07 E-value=4.2e-05 Score=71.47 Aligned_cols=174 Identities=18% Similarity=0.090 Sum_probs=93.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh--HHhhhhcccCCCeEEEEeC----CCCHHhhhCCCCEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG--VTADISHMDTGAVVRGFLG----QPQLENALTGMDLV 113 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g--~~~DL~~~~~~~~v~~~~~----~~d~~eal~~ADiV 113 (279)
..|||.|+||+|++|++++..|+..|+ +|++++.+.... ...++.. ...+..+.. ...+.+++++.|+|
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~d~V 83 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGY--TVHATLRDPAKSLHLLSKWKE---GDRLRLFRADLQEEGSFDEAVKGCDGV 83 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHhhcc---CCeEEEEECCCCCHHHHHHHHcCCCEE
Confidence 357999999999999999999999997 899888754211 1112211 122332211 11244567889999
Q ss_pred EEccCCCCCC---C-Cchhh-----HHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH--------HHHHHHH----
Q 023671 114 IIPAGVPRKP---G-MTRDD-----LFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV--------PIAAEVF---- 172 (279)
Q Consensus 114 Iitag~~~k~---g-~~r~d-----~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t--------~~~~~~~---- 172 (279)
|++|+..... . .+..+ .+..|+.....+++.+.+...-..++++|.-.-... ....|-.
T Consensus 84 ih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~ 163 (353)
T PLN02896 84 FHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPI 163 (353)
T ss_pred EECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcH
Confidence 9999864211 1 11122 233445778888888876532224444432110000 0000000
Q ss_pred HH-hCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCc-ceeecCCC
Q 023671 173 KK-AGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVD-VPVVGGHA 218 (279)
Q Consensus 173 ~~-~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~-~~ViGehg 218 (279)
.. ....++.-.+|.+.+...++-...++..+++..-++ ..|+|.+.
T Consensus 164 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~ 211 (353)
T PLN02896 164 DHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFL 211 (353)
T ss_pred HHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCc
Confidence 00 000112235666655555555556677777666665 44777653
No 103
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=98.06 E-value=5.9e-05 Score=68.87 Aligned_cols=108 Identities=11% Similarity=0.117 Sum_probs=64.8
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC-HHhhh-----CCCCEEEEcc
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ-LENAL-----TGMDLVIIPA 117 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d-~~eal-----~~ADiVIita 117 (279)
|.|+||+|++|++++..|+..|+ ..+.++|..........+.+.+. ..... ..+ +.+.+ .++|+||++|
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~-~d~~~---~~~~~~~~~~~~~~~~~d~Vih~A 76 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI-TDILVVDNLKDGTKFVNLVDLDI-ADYMD---KEDFLAQIMAGDDFGDIEAIFHEG 76 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC-ceEEEecCCCcchHHHhhhhhhh-hhhhh---HHHHHHHHhcccccCCccEEEECc
Confidence 68999999999999999998885 35667786542111011111110 00000 001 11222 3699999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
+.+..........+..|+....++++.+.+... .+|..|
T Consensus 77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~--~~i~~S 115 (308)
T PRK11150 77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYAS 115 (308)
T ss_pred eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC--cEEEEc
Confidence 854333333445678899999999999987653 344443
No 104
>PLN02778 3,5-epimerase/4-reductase
Probab=98.06 E-value=6.3e-05 Score=69.08 Aligned_cols=95 Identities=22% Similarity=0.194 Sum_probs=64.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIP 116 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIit 116 (279)
.+.|||.|+||+||+|++++..|..+|+ +|.+...+ +.+.. .+..+++ +.|+||++
T Consensus 7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~--~V~~~~~~--------~~~~~------------~v~~~l~~~~~D~ViH~ 64 (298)
T PLN02778 7 SATLKFLIYGKTGWIGGLLGKLCQEQGI--DFHYGSGR--------LENRA------------SLEADIDAVKPTHVFNA 64 (298)
T ss_pred CCCCeEEEECCCCHHHHHHHHHHHhCCC--EEEEecCc--------cCCHH------------HHHHHHHhcCCCEEEEC
Confidence 3457999999999999999999999987 77654221 11100 0112222 68999999
Q ss_pred cCCCCCCC-----CchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671 117 AGVPRKPG-----MTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156 (279)
Q Consensus 117 ag~~~k~g-----~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv 156 (279)
|+....+. ....+.+..|+.....+++.+++.... ++++
T Consensus 65 Aa~~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~-~v~~ 108 (298)
T PLN02778 65 AGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLV-LTNY 108 (298)
T ss_pred CcccCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEE
Confidence 98643221 234567889999999999999987643 3443
No 105
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=98.05 E-value=4.9e-05 Score=70.10 Aligned_cols=101 Identities=22% Similarity=0.342 Sum_probs=64.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhccc------CCCeEEEEeCCCCHHhhhCCCCE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD------TGAVVRGFLGQPQLENALTGMDL 112 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~------~~~~v~~~~~~~d~~eal~~ADi 112 (279)
||||+|||+ |.+|+.++..|...++ +|.++|+++. .....+..+.. ....+.. +++..++++++|+
T Consensus 1 mmkI~iiG~-G~mG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLGA-GSWGTALAIVLARNGH--DVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRA---TTDLAEALADADL 74 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEE---eCCHHHHHhCCCE
Confidence 469999998 9999999999999988 8999999752 11111100000 0012222 2356677899999
Q ss_pred EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 163 (279)
Q Consensus 113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~ 163 (279)
||++... ..++++++.+.+.. |+.+++..+|-++.
T Consensus 75 vi~~v~~----------------~~~~~v~~~l~~~~~~~~~vi~~~ngv~~ 110 (325)
T PRK00094 75 ILVAVPS----------------QALREVLKQLKPLLPPDAPIVWATKGIEP 110 (325)
T ss_pred EEEeCCH----------------HHHHHHHHHHHhhcCCCCEEEEEeecccC
Confidence 9998631 12344555555553 56777777766553
No 106
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=98.05 E-value=6.7e-05 Score=63.06 Aligned_cols=91 Identities=24% Similarity=0.292 Sum_probs=64.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-C---CCHHhhhCCCCEEEEccCC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-Q---PQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~---~d~~eal~~ADiVIitag~ 119 (279)
|.|+||+|++|..++..|+.+++ +|.++-+++.+ ..+ ...++.+.+ . +++.++++++|.||.++|.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~--~V~~~~R~~~~--~~~------~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGH--EVTALVRSPSK--AED------SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTS--EEEEEESSGGG--HHH------CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCC--EEEEEecCchh--ccc------ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 78999999999999999999996 99999876521 121 122332211 1 2346789999999999975
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi 155 (279)
+.+ .....+.+++.+++....-+++
T Consensus 71 ~~~-----------~~~~~~~~~~a~~~~~~~~~v~ 95 (183)
T PF13460_consen 71 PPK-----------DVDAAKNIIEAAKKAGVKRVVY 95 (183)
T ss_dssp TTT-----------HHHHHHHHHHHHHHTTSSEEEE
T ss_pred hcc-----------ccccccccccccccccccccee
Confidence 533 1677888899988876443333
No 107
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=98.05 E-value=4.6e-05 Score=70.34 Aligned_cols=113 Identities=18% Similarity=0.148 Sum_probs=69.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC--CCCEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT--GMDLV 113 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~--~ADiV 113 (279)
|||.|+||+|++|++++..|+..|+ +|+++|... .......+.+.. ...+..+. .-.| +.++++ ++|+|
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~d~~~~~~~~~~~~~d~v 77 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH--DVVILDNLCNSKRSVLPVIERLG-GKHPTFVEGDIRNEALLTEILHDHAIDTV 77 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC--eEEEEecCCCchHhHHHHHHHhc-CCCceEEEccCCCHHHHHHHHhcCCCCEE
Confidence 5899999999999999999999987 999998643 111111111111 01111111 1122 233444 68999
Q ss_pred EEccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 114 IIPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 114 Iitag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
|++|+..... .....+.+..|+.....+++.+++..... ++.+|
T Consensus 78 vh~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 123 (338)
T PRK10675 78 IHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKN-LIFSS 123 (338)
T ss_pred EECCccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEec
Confidence 9998764321 12235678889999999999988765433 44443
No 108
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=98.05 E-value=8.3e-05 Score=71.69 Aligned_cols=110 Identities=22% Similarity=0.220 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc----------------CCCeEEEEeCCCCHH
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD----------------TGAVVRGFLGQPQLE 104 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~----------------~~~~v~~~~~~~d~~ 104 (279)
++||+|||. |.+|.++|..|+..|+ +|+.+|+++.+-.. +.... ....+.. +++
T Consensus 3 ~~kI~VIGl-G~~G~~~A~~La~~G~--~V~~~D~~~~~v~~--l~~g~~~~~e~~l~~~l~~~~~~g~l~~---~~~-- 72 (415)
T PRK11064 3 FETISVIGL-GYIGLPTAAAFASRQK--QVIGVDINQHAVDT--INRGEIHIVEPDLDMVVKTAVEGGYLRA---TTT-- 72 (415)
T ss_pred ccEEEEECc-chhhHHHHHHHHhCCC--EEEEEeCCHHHHHH--HHCCCCCcCCCCHHHHHHHHhhcCceee---ecc--
Confidence 579999998 9999999999999998 99999998621111 11110 0011221 122
Q ss_pred hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe-cCCCCchHHHH
Q 023671 105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI-SNPVNSTVPIA 168 (279)
Q Consensus 105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~-TNPvd~~t~~~ 168 (279)
.++||+||++.+.|.+... ..+...+.+.++.|.++. ++.+||.- |.|....-.+.
T Consensus 73 --~~~aDvvii~vptp~~~~~------~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~ 130 (415)
T PRK11064 73 --PEPADAFLIAVPTPFKGDH------EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMA 130 (415)
T ss_pred --cccCCEEEEEcCCCCCCCC------CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHH
Confidence 3589999999988754321 123445556666776665 44554443 56776655443
No 109
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=98.04 E-value=0.00012 Score=67.31 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=67.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcc-cCCCeEEEEe----CCCCHHhhhCCCCEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM-DTGAVVRGFL----GQPQLENALTGMDLVI 114 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~-~~~~~v~~~~----~~~d~~eal~~ADiVI 114 (279)
.++|.|+||+|++|++++..|+..|+ +|++..++.. ......+... .....+..+. ....+.++++++|+||
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vi 82 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY--TVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVF 82 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEE
Confidence 35999999999999999999999998 8886655442 1111222111 0011223221 1123556788999999
Q ss_pred EccCCCCCC-CCchhhHHHhhHHHHHHHHHHHHHh
Q 023671 115 IPAGVPRKP-GMTRDDLFNINAGIVRTLCEGIAKC 148 (279)
Q Consensus 115 itag~~~k~-g~~r~d~~~~N~~i~~~i~~~I~~~ 148 (279)
++|+..... .....+++..|+.....+++.+.+.
T Consensus 83 h~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~ 117 (322)
T PLN02986 83 HTASPVFFTVKDPQTELIDPALKGTINVLNTCKET 117 (322)
T ss_pred EeCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhc
Confidence 999853211 1122345778999999999988765
No 110
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=98.03 E-value=2.5e-05 Score=71.56 Aligned_cols=99 Identities=17% Similarity=0.155 Sum_probs=64.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV 119 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag~ 119 (279)
|||.|+||+||+|++++..|...| +|+.+|.... ....|+.+. ..+.+.++ +.|+||++|+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~~~~-~~~~Dl~d~------------~~~~~~~~~~~~D~Vih~Aa~ 64 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDVHST-DYCGDFSNP------------EGVAETVRKIRPDVIVNAAAH 64 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEeccccc-cccCCCCCH------------HHHHHHHHhcCCCEEEECCcc
Confidence 589999999999999999998877 5777876431 001122211 12334555 58999999976
Q ss_pred CCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 120 PRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 120 ~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.... ..........|+.....+++.+.+... .++.+|
T Consensus 65 ~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~--~~v~~S 103 (299)
T PRK09987 65 TAVDKAESEPEFAQLLNATSVEAIAKAANEVGA--WVVHYS 103 (299)
T ss_pred CCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEc
Confidence 4321 112233456899999999999988653 444443
No 111
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=98.02 E-value=3.8e-05 Score=68.94 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=67.4
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCCCC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPRKP 123 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~k~ 123 (279)
|.|+||+|++|++++..|+..|+ +|+.++++....... .. ..+..... ....++++++|+||++++.+...
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~--~V~~~~r~~~~~~~~--~~----~~~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~ 71 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGH--EVTILTRSPPAGANT--KW----EGYKPWAP-LAESEALEGADAVINLAGEPIAD 71 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCC--EEEEEeCCCCCCCcc--cc----eeeecccc-cchhhhcCCCCEEEECCCCCccc
Confidence 56999999999999999999987 999999876211000 00 00111111 12356789999999999865432
Q ss_pred C-C---chhhHHHhhHHHHHHHHHHHHHhCCC
Q 023671 124 G-M---TRDDLFNINAGIVRTLCEGIAKCCPN 151 (279)
Q Consensus 124 g-~---~r~d~~~~N~~i~~~i~~~I~~~~p~ 151 (279)
+ . ...++...|+...+.+++.+.+....
T Consensus 72 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~ 103 (292)
T TIGR01777 72 KRWTEERKQEIRDSRIDTTRALVEAIAAAEQK 103 (292)
T ss_pred ccCCHHHHHHHHhcccHHHHHHHHHHHhcCCC
Confidence 2 1 22456677999999999999987643
No 112
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.01 E-value=6.9e-05 Score=65.43 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~ 120 (279)
||+++|+|+ |.+|+.++..+...++ ||.+-..+..+.....-.. ..+.++. . ..++|.+.+|+||.+..
T Consensus 1 m~~~~i~Gt-GniG~alA~~~a~ag~--eV~igs~r~~~~~~a~a~~--l~~~i~~---~-~~~dA~~~aDVVvLAVP-- 69 (211)
T COG2085 1 MMIIAIIGT-GNIGSALALRLAKAGH--EVIIGSSRGPKALAAAAAA--LGPLITG---G-SNEDAAALADVVVLAVP-- 69 (211)
T ss_pred CcEEEEecc-ChHHHHHHHHHHhCCC--eEEEecCCChhHHHHHHHh--hcccccc---C-ChHHHHhcCCEEEEecc--
Confidence 579999998 9999999999999998 9888866552221111111 1223333 2 34689999999999863
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv 161 (279)
.+-+.++++.+...-.+-++|-.|||.
T Consensus 70 --------------~~a~~~v~~~l~~~~~~KIvID~tnp~ 96 (211)
T COG2085 70 --------------FEAIPDVLAELRDALGGKIVIDATNPI 96 (211)
T ss_pred --------------HHHHHhHHHHHHHHhCCeEEEecCCCc
Confidence 223445556666544477888889995
No 113
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.01 E-value=0.00012 Score=70.96 Aligned_cols=119 Identities=14% Similarity=0.141 Sum_probs=71.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC------------CCeEEEEeCCCCHHhh
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT------------GAVVRGFLGQPQLENA 106 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~------------~~~v~~~~~~~d~~ea 106 (279)
.++|||+|||. |+||..+|..|+. ++ +|+.||+++. .+..|..... ...+.. +++. ++
T Consensus 4 ~~~mkI~vIGl-GyvGlpmA~~la~-~~--~V~g~D~~~~--~ve~l~~G~~~~~e~~~~~l~~~g~l~~---t~~~-~~ 73 (425)
T PRK15182 4 IDEVKIAIIGL-GYVGLPLAVEFGK-SR--QVVGFDVNKK--RILELKNGVDVNLETTEEELREARYLKF---TSEI-EK 73 (425)
T ss_pred CCCCeEEEECc-CcchHHHHHHHhc-CC--EEEEEeCCHH--HHHHHHCcCCCCCCCCHHHHHhhCCeeE---EeCH-HH
Confidence 45689999998 9999999998776 55 9999999862 1222231110 011222 2343 57
Q ss_pred hCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEE-ecCCCCchHHHHHHHHH
Q 023671 107 LTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNL-ISNPVNSTVPIAAEVFK 173 (279)
Q Consensus 107 l~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv-~TNPvd~~t~~~~~~~~ 173 (279)
+++||++|++.+.|.+.... .+..-+..-.+.|.++. +..++|+ .|-|.+....++...+.
T Consensus 74 ~~~advvii~Vptp~~~~~~------~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~ 136 (425)
T PRK15182 74 IKECNFYIITVPTPINTYKQ------PDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILA 136 (425)
T ss_pred HcCCCEEEEEcCCCCCCCCC------cchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHH
Confidence 89999999999988643211 12333444455555554 3444433 46777765544333333
No 114
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=98.00 E-value=3.7e-05 Score=64.51 Aligned_cols=89 Identities=17% Similarity=0.221 Sum_probs=58.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~ 120 (279)
|+||++||. |.+|+.++..|...|+ +|..||+++ ....++.+.. .+. .+++.++++++|+||.+..
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~--~v~~~d~~~--~~~~~~~~~g----~~~---~~s~~e~~~~~dvvi~~v~-- 66 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGY--EVTVYDRSP--EKAEALAEAG----AEV---ADSPAEAAEQADVVILCVP-- 66 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT--EEEEEESSH--HHHHHHHHTT----EEE---ESSHHHHHHHBSEEEE-SS--
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCC--eEEeeccch--hhhhhhHHhh----hhh---hhhhhhHhhcccceEeecc--
Confidence 579999998 9999999999999998 999999864 2223333322 232 2357888999999999852
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHH--HHHhC-CCceEEE
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEG--IAKCC-PNATVNL 156 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~--I~~~~-p~a~viv 156 (279)
+.+.++++... +.... +..++|.
T Consensus 67 -------------~~~~v~~v~~~~~i~~~l~~g~iiid 92 (163)
T PF03446_consen 67 -------------DDDAVEAVLFGENILAGLRPGKIIID 92 (163)
T ss_dssp -------------SHHHHHHHHHCTTHGGGS-TTEEEEE
T ss_pred -------------cchhhhhhhhhhHHhhccccceEEEe
Confidence 23445666665 55544 4444444
No 115
>PLN02583 cinnamoyl-CoA reductase
Probab=97.99 E-value=0.00015 Score=66.37 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=68.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch----hHHhhhhcccCCCeEEEEe----CCCCHHhhhCCCCE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP----GVTADISHMDTGAVVRGFL----GQPQLENALTGMDL 112 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~----g~~~DL~~~~~~~~v~~~~----~~~d~~eal~~ADi 112 (279)
.++|.|+||+|++|++++..|+.+|+ +|++.+++... ....++... ...+..+. ...++.+++.++|.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~--~V~~~~R~~~~~~~~~~~~~l~~~--~~~~~~~~~Dl~d~~~~~~~l~~~d~ 81 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY--TVHAAVQKNGETEIEKEIRGLSCE--EERLKVFDVDPLDYHSILDALKGCSG 81 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC--EEEEEEcCchhhhHHHHHHhcccC--CCceEEEEecCCCHHHHHHHHcCCCE
Confidence 35899999999999999999999998 99888764311 111222111 11222211 11235678899999
Q ss_pred EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC
Q 023671 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC 149 (279)
Q Consensus 113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~ 149 (279)
|+++++.+........+++..|+.....+++.+.+..
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~ 118 (297)
T PLN02583 82 LFCCFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTD 118 (297)
T ss_pred EEEeCccCCcccccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9987654422111234678889999999999988763
No 116
>PRK06194 hypothetical protein; Provisional
Probab=97.98 E-value=0.00015 Score=65.38 Aligned_cols=158 Identities=20% Similarity=0.163 Sum_probs=84.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 108 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------ 108 (279)
+++|.|+||+|++|++++..|+.+|. +|+++|++. ......++... ..++..+. ..+| +.+.++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM--KLVLADVQQDALDRAVAELRAQ--GAEVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC--EEEEEeCChHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999997 999999875 22222333321 12232221 1122 222232
Q ss_pred -CCCEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCC-----ceEEEecCCCCchHHHHHHHH
Q 023671 109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPN-----ATVNLISNPVNSTVPIAAEVF 172 (279)
Q Consensus 109 -~ADiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~-----a~viv~TNPvd~~t~~~~~~~ 172 (279)
..|+||++||..... ..+.. ..+..|+. +.+.+.+.+.+.+.+ +.++++|.....
T Consensus 82 g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~--------- 152 (287)
T PRK06194 82 GAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGL--------- 152 (287)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhc---------
Confidence 469999999874321 11112 23455554 444455556555432 556555532211
Q ss_pred HHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671 173 KKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 214 (279)
Q Consensus 173 ~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi 214 (279)
.+.+..-.++.+..-...+-..+++.++.....+++..+
T Consensus 153 ---~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v 191 (287)
T PRK06194 153 ---LAPPAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVL 191 (287)
T ss_pred ---cCCCCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEE
Confidence 122333345554322233445556666655545544333
No 117
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.95 E-value=8.1e-05 Score=68.77 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=57.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~ 120 (279)
.|||+|||+ |.+|.+++..|...|+ +|.++|+++. +++.++++++|+||++..
T Consensus 4 ~m~I~iiG~-G~~G~~lA~~l~~~G~--~V~~~~r~~~----------------------~~~~~~~~~advvi~~vp-- 56 (308)
T PRK14619 4 PKTIAILGA-GAWGSTLAGLASANGH--RVRVWSRRSG----------------------LSLAAVLADADVIVSAVS-- 56 (308)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCC--EEEEEeCCCC----------------------CCHHHHHhcCCEEEEECC--
Confidence 469999998 9999999999999998 9999998641 134577889999998852
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHh--CCCceEEEecC
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKC--CPNATVNLISN 159 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TN 159 (279)
...++++++.+..+ .++.+++..|+
T Consensus 57 --------------~~~~~~v~~~l~~~~~~~~~ivi~~s~ 83 (308)
T PRK14619 57 --------------MKGVRPVAEQVQALNLPPETIIVTATK 83 (308)
T ss_pred --------------hHHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence 02344555666543 35667777676
No 118
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.95 E-value=9.1e-05 Score=70.28 Aligned_cols=82 Identities=17% Similarity=0.328 Sum_probs=57.7
Q ss_pred hhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCC-----CcEEEEEeCCCc---hhHHhhhhcc--cC-----
Q 023671 26 SCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPL-----VSVLHLYDVVNT---PGVTADISHM--DT----- 90 (279)
Q Consensus 26 ~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~-----~~ev~L~D~~~~---~g~~~DL~~~--~~----- 90 (279)
|+|.|.-|... ||+|||+ |.-|+++|..|..++. ..+|.|+.+++. +..+.++.+. +.
T Consensus 2 ~~~~~~~~~~~------ki~ViGa-G~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~ 74 (365)
T PTZ00345 2 SLFQKLRCGPL------KVSVIGS-GNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG 74 (365)
T ss_pred cchhhcccCCC------eEEEECC-CHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC
Confidence 57777766665 9999999 9999999999998761 238999988762 1234444432 11
Q ss_pred ---CCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 91 ---GAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 91 ---~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
..++.. ++|+.+++++||+||++.
T Consensus 75 ~~Lp~ni~~---tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 75 IKLPDNIVA---VSDLKEAVEDADLLIFVI 101 (365)
T ss_pred CcCCCceEE---ecCHHHHHhcCCEEEEEc
Confidence 123333 357788999999999975
No 119
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=97.94 E-value=6.8e-05 Score=68.57 Aligned_cols=117 Identities=15% Similarity=0.202 Sum_probs=70.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHh---hhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTA---DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~---DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
|||+|+|+ |.+|..++..|...|+ +|.++++.+ .+.... .+........+.. ...++..+..+++|+||++.
T Consensus 1 mkI~IiG~-G~iG~~~a~~L~~~g~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVGA-GAVGGTFGGRLLEAGR--DVTFLVRPKRAKALRERGLVIRSDHGDAVVPG-PVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEECC-CHHHHHHHHHHHHCCC--ceEEEecHHHHHHHHhCCeEEEeCCCeEEecc-eeecCHHHccCCCCEEEEEe
Confidence 58999999 9999999999999887 899999822 111110 0110000000111 01234445568999999986
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeee
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLG 185 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG 185 (279)
... -+.++++.+... .++.+|+.+.|.++....+ .+ .+|++++++
T Consensus 77 k~~----------------~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l-----~~--~~~~~~v~~ 122 (305)
T PRK12921 77 KAY----------------QLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQL-----EP--YFGRERVLG 122 (305)
T ss_pred ccc----------------CHHHHHHHHHhhcCCCCEEEEeeCCCChHHHH-----HH--hCCcccEEE
Confidence 322 133455555554 3567788889998765432 22 256667774
No 120
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=97.94 E-value=9.6e-05 Score=68.71 Aligned_cols=154 Identities=13% Similarity=0.028 Sum_probs=85.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---hHHhhhhc-c--cCCCeEEEEeC-CC---CHHhhhCC--
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---GVTADISH-M--DTGAVVRGFLG-QP---QLENALTG-- 109 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---g~~~DL~~-~--~~~~~v~~~~~-~~---d~~eal~~-- 109 (279)
+||.|+||+|++|++++..|+..|+ +|+++|++... .....+.. . .....++.+.+ -. .+.+++++
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~ 78 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY--EVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIK 78 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC--EEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCC
Confidence 4899999999999999999999998 99999976421 11111110 0 00112222111 11 23445664
Q ss_pred CCEEEEccCCCCCC-CC-chhhHHHhhHHHHHHHHHHHHHhCC-C-ceEEEecC------CCC-chHHHHHHHHHHhCCC
Q 023671 110 MDLVIIPAGVPRKP-GM-TRDDLFNINAGIVRTLCEGIAKCCP-N-ATVNLISN------PVN-STVPIAAEVFKKAGTY 178 (279)
Q Consensus 110 ADiVIitag~~~k~-g~-~r~d~~~~N~~i~~~i~~~I~~~~p-~-a~viv~TN------Pvd-~~t~~~~~~~~~~~~~ 178 (279)
.|+||++|+..... .. .....+..|+.....+++.+.+.+- + ..++++|. +.+ ..+ ....+
T Consensus 79 ~d~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~--------E~~~~ 150 (343)
T TIGR01472 79 PTEIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQN--------ETTPF 150 (343)
T ss_pred CCEEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCC--------CCCCC
Confidence 59999999864321 11 1233445677788889998887652 2 24444332 111 000 11123
Q ss_pred CCCCeeeecchhHHHHHHHHHHHcCCC
Q 023671 179 DPKKLLGVTMLDVVRANTFVAEVLGLD 205 (279)
Q Consensus 179 ~~~kViG~t~lds~R~~~~la~~l~v~ 205 (279)
.+...+|.+.+...++-...++..+++
T Consensus 151 ~p~~~Y~~sK~~~e~~~~~~~~~~~~~ 177 (343)
T TIGR01472 151 YPRSPYAAAKLYAHWITVNYREAYGLF 177 (343)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHhCCc
Confidence 344566666555555555556666654
No 121
>PRK07201 short chain dehydrogenase; Provisional
Probab=97.94 E-value=0.00014 Score=73.37 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=69.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHh--CCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCC-CC--------HHhhhCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKI--NPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQ-PQ--------LENALTGM 110 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~--~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~-~d--------~~eal~~A 110 (279)
|||.|+||+|++|++++..|+. .+. +|++++++.......++.......+++.+.+. .| ..+.++++
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~--~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l~~~ 78 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREA--TVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAELGDI 78 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCC--EEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHhcCC
Confidence 5899999999999999999984 555 99999986522221122111000122221110 01 11234899
Q ss_pred CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156 (279)
Q Consensus 111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv 156 (279)
|+||++|+... ...+..+....|+...+.+++.+.+.....++.+
T Consensus 79 D~Vih~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~ 123 (657)
T PRK07201 79 DHVVHLAAIYD-LTADEEAQRAANVDGTRNVVELAERLQAATFHHV 123 (657)
T ss_pred CEEEECceeec-CCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEE
Confidence 99999998542 2233455677899999999999887654444443
No 122
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.93 E-value=9.3e-05 Score=73.71 Aligned_cols=116 Identities=13% Similarity=0.057 Sum_probs=72.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhc-----cc--CCCeEEEEe----CCCCHHhhh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISH-----MD--TGAVVRGFL----GQPQLENAL 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~-----~~--~~~~v~~~~----~~~d~~eal 107 (279)
.+.|.|+||+|++|..++..|+..|+ +|++++++.. ......+.+ .. ...++..+. ...++.+++
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~--~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGF--RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 45799999999999999999999998 9999998762 111111211 00 011222211 112344568
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.++|+||+++|........-...+..|......+++.+.+..-..+|++.|
T Consensus 158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSS 208 (576)
T PLN03209 158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTS 208 (576)
T ss_pred cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEcc
Confidence 899999999986533211122345667888888999888765444444333
No 123
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.93 E-value=8.5e-05 Score=69.06 Aligned_cols=69 Identities=26% Similarity=0.464 Sum_probs=51.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc--c--C------CCeEEEEeCCCCHHhhhCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--T------GAVVRGFLGQPQLENALTGM 110 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~--~--~------~~~v~~~~~~~d~~eal~~A 110 (279)
++||+|+|+ |.=|.++|..|...++ +|.|+.+++ ..+.++... + . .+.++. ++|+.+++++|
T Consensus 1 ~~kI~ViGa-GswGTALA~~la~ng~--~V~lw~r~~--~~~~~i~~~~~N~~yLp~i~lp~~l~a---t~Dl~~a~~~a 72 (329)
T COG0240 1 MMKIAVIGA-GSWGTALAKVLARNGH--EVRLWGRDE--EIVAEINETRENPKYLPGILLPPNLKA---TTDLAEALDGA 72 (329)
T ss_pred CceEEEEcC-ChHHHHHHHHHHhcCC--eeEEEecCH--HHHHHHHhcCcCccccCCccCCccccc---ccCHHHHHhcC
Confidence 469999999 9999999999999997 999999876 222223322 1 1 122332 56899999999
Q ss_pred CEEEEcc
Q 023671 111 DLVIIPA 117 (279)
Q Consensus 111 DiVIita 117 (279)
|+|++..
T Consensus 73 d~iv~av 79 (329)
T COG0240 73 DIIVIAV 79 (329)
T ss_pred CEEEEEC
Confidence 9999975
No 124
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=97.91 E-value=0.00013 Score=67.97 Aligned_cols=104 Identities=20% Similarity=0.207 Sum_probs=63.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHh---hhhcccCCC-eE--EEEeCCCCHHhhhCCCCEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTA---DISHMDTGA-VV--RGFLGQPQLENALTGMDLV 113 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~---DL~~~~~~~-~v--~~~~~~~d~~eal~~ADiV 113 (279)
+|||+|||+ |.+|+.++..|...|+ +|.++|+++. ..... .+.+..... .. ..+..+++. ++++++|+|
T Consensus 2 ~mkI~IiG~-G~mG~~~A~~L~~~G~--~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLGA-GSIGCYLGGRLAAAGA--DVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV 77 (341)
T ss_pred CceEEEECC-CHHHHHHHHHHHhcCC--cEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence 579999999 9999999999999998 9999998541 11000 000000000 00 001113354 678999999
Q ss_pred EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCch
Q 023671 114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNST 164 (279)
Q Consensus 114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~ 164 (279)
|++...+. ..++++.+... .++.+|+..+|..+..
T Consensus 78 il~vk~~~----------------~~~~~~~l~~~~~~~~iii~~~nG~~~~ 113 (341)
T PRK08229 78 LVTVKSAA----------------TADAAAALAGHARPGAVVVSFQNGVRNA 113 (341)
T ss_pred EEEecCcc----------------hHHHHHHHHhhCCCCCEEEEeCCCCCcH
Confidence 99873221 12334455554 3667777788987754
No 125
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=97.89 E-value=0.00021 Score=65.23 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=63.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC---CCeEEE-EeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT---GAVVRG-FLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~---~~~v~~-~~~~~d~~eal~~ADiVIita 117 (279)
|||+|+|+ |.+|+.++..|.+.|+ +|.++|+++..-. .+..... ...... ....++..+ .+++|+||++.
T Consensus 1 m~I~IiG~-G~~G~~~a~~L~~~g~--~V~~~~r~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~d~vila~ 74 (304)
T PRK06522 1 MKIAILGA-GAIGGLFGAALAQAGH--DVTLVARRGAHLD--ALNENGLRLEDGEITVPVLAADDPAE-LGPQDLVILAV 74 (304)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--eEEEEECChHHHH--HHHHcCCcccCCceeecccCCCChhH-cCCCCEEEEec
Confidence 58999999 9999999999999887 9999998541110 1111000 000110 011234434 49999999986
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchH
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTV 165 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t 165 (279)
... -+.++++.+... .++..|+...|.++...
T Consensus 75 k~~----------------~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~ 107 (304)
T PRK06522 75 KAY----------------QLPAALPSLAPLLGPDTPVLFLQNGVGHLE 107 (304)
T ss_pred ccc----------------cHHHHHHHHhhhcCCCCEEEEecCCCCcHH
Confidence 321 134445555544 36678888899988654
No 126
>PLN02686 cinnamoyl-CoA reductase
Probab=97.89 E-value=9.3e-05 Score=69.95 Aligned_cols=119 Identities=11% Similarity=0.104 Sum_probs=72.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhcc---c-CCCeEEEEe----CCCCHHhhhC
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHM---D-TGAVVRGFL----GQPQLENALT 108 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~---~-~~~~v~~~~----~~~d~~eal~ 108 (279)
..++++|.|+||+|++|++++..|+..|+ +|+++..+... ....++... . ....+..+. ...++.++++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~--~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~ 127 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGY--SVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFD 127 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHH
Confidence 35577999999999999999999999998 88776554311 111122110 0 001222211 1123456788
Q ss_pred CCCEEEEccCCCCCCCC--chhhHHHhhHHHHHHHHHHHHHh-CCCceEEEec
Q 023671 109 GMDLVIIPAGVPRKPGM--TRDDLFNINAGIVRTLCEGIAKC-CPNATVNLIS 158 (279)
Q Consensus 109 ~ADiVIitag~~~k~g~--~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~T 158 (279)
++|.||++++.....+. ....+...|+...+.+++.+.+. +.+-+|+..|
T Consensus 128 ~~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS 180 (367)
T PLN02686 128 GCAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSS 180 (367)
T ss_pred hccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEecc
Confidence 99999999875422221 12345567889999999998875 3343343333
No 127
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=97.88 E-value=8e-05 Score=67.06 Aligned_cols=95 Identities=23% Similarity=0.298 Sum_probs=66.6
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCC--CEEEEccCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGM--DLVIIPAGVP 120 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~A--DiVIitag~~ 120 (279)
||.|+||+|++|++++..|...|+ +|+++++.. .|+.+. .++.++++++ |+||++++..
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~--~v~~~~r~~-----~d~~~~------------~~~~~~~~~~~~d~vi~~a~~~ 61 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR--VVVALTSSQ-----LDLTDP------------EALERLLRAIRPDAVVNTAAYT 61 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC--EEEEeCCcc-----cCCCCH------------HHHHHHHHhCCCCEEEECCccc
Confidence 689999999999999999999887 999987641 222221 1344566665 9999999864
Q ss_pred CCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 121 RKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 121 ~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.... ......+..|+.....+++.+.+... .++++|
T Consensus 62 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~S 99 (287)
T TIGR01214 62 DVDGAESDPEKAFAVNALAPQNLARAAARHGA--RLVHIS 99 (287)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEe
Confidence 3221 12345677899999999999887643 344443
No 128
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.87 E-value=4.3e-05 Score=69.44 Aligned_cols=113 Identities=17% Similarity=0.092 Sum_probs=69.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
+..+||+|+||+||||||++-.|+..|+ +|...|..-. +....+.|...+++.+.+. .+.....+..+|-|++.|.
T Consensus 25 ~~~lrI~itGgaGFIgSHLvdkLm~egh--~VIa~Dn~ft-g~k~n~~~~~~~~~fel~~-hdv~~pl~~evD~IyhLAa 100 (350)
T KOG1429|consen 25 SQNLRILITGGAGFIGSHLVDKLMTEGH--EVIALDNYFT-GRKENLEHWIGHPNFELIR-HDVVEPLLKEVDQIYHLAA 100 (350)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHhcCC--eEEEEecccc-cchhhcchhccCcceeEEE-eechhHHHHHhhhhhhhcc
Confidence 4457999999999999999999999997 9999997542 3333445544344444321 1122356889999999886
Q ss_pred CCCCCC--CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671 119 VPRKPG--MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157 (279)
Q Consensus 119 ~~~k~g--~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~ 157 (279)
....++ .+-.+.+..|.--........++.+ +.++.+
T Consensus 101 pasp~~y~~npvktIktN~igtln~lglakrv~--aR~l~a 139 (350)
T KOG1429|consen 101 PASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG--ARFLLA 139 (350)
T ss_pred CCCCcccccCccceeeecchhhHHHHHHHHHhC--ceEEEe
Confidence 433222 2333444455444444444444443 444443
No 129
>PLN02240 UDP-glucose 4-epimerase
Probab=97.84 E-value=0.00028 Score=65.45 Aligned_cols=116 Identities=18% Similarity=0.157 Sum_probs=70.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhccc--CCCeEEEEe----CCCCHHhhhC--C
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMD--TGAVVRGFL----GQPQLENALT--G 109 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~--~~~~v~~~~----~~~d~~eal~--~ 109 (279)
+.+||.|+||+|++|++++..|+..|+ +|+++|.... ......+.+.. ....++.+. ...++.++++ +
T Consensus 4 ~~~~vlItGatG~iG~~l~~~L~~~g~--~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~ 81 (352)
T PLN02240 4 MGRTILVTGGAGYIGSHTVLQLLLAGY--KVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTR 81 (352)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCC
Confidence 346999999999999999999999887 9999986431 11111111110 011122211 1112333343 6
Q ss_pred CCEEEEccCCCCC-CC-CchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 110 MDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 110 ADiVIitag~~~k-~g-~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
+|+||++|+.... .. ......+..|+.....+++.+.+..... ++.+|
T Consensus 82 ~d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~v~~S 131 (352)
T PLN02240 82 FDAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKK-LVFSS 131 (352)
T ss_pred CCEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCE-EEEEc
Confidence 8999999986421 11 2234577889999999999888765443 44444
No 130
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.83 E-value=0.00017 Score=66.91 Aligned_cols=98 Identities=18% Similarity=0.376 Sum_probs=63.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc--c--------CCCeEEEEeCCCCHHhhh-CCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--D--------TGAVVRGFLGQPQLENAL-TGM 110 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~--~--------~~~~v~~~~~~~d~~eal-~~A 110 (279)
|||+|||| |.+|+.++..|...++ +|.++++++. ....+... . ....++. ++++.+++ .++
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~--~V~l~~r~~~--~~~~i~~~~~~~~~~~~~~~~~~i~~---~~~~~~~~~~~~ 72 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKI--SVNLWGRNHT--TFESINTKRKNLKYLPTCHLPDNISV---KSAIDEVLSDNA 72 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCC--eEEEEecCHH--HHHHHHHcCCCcccCCCCcCCCCeEE---eCCHHHHHhCCC
Confidence 58999999 9999999999999987 9999998652 11112110 0 0112333 24666666 589
Q ss_pred CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHH-h-CCCceEEEecCCCCc
Q 023671 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAK-C-CPNATVNLISNPVNS 163 (279)
Q Consensus 111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~-~-~p~a~viv~TNPvd~ 163 (279)
|+||++.- ..-+.++++.+.. + .++..++..+|=.+.
T Consensus 73 Dliiiavk----------------s~~~~~~l~~l~~~~l~~~~~vv~~~nGi~~ 111 (326)
T PRK14620 73 TCIILAVP----------------TQQLRTICQQLQDCHLKKNTPILICSKGIEK 111 (326)
T ss_pred CEEEEEeC----------------HHHHHHHHHHHHHhcCCCCCEEEEEEcCeeC
Confidence 99999862 1224455555654 3 366677777877643
No 131
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.80 E-value=0.00019 Score=63.45 Aligned_cols=115 Identities=16% Similarity=0.223 Sum_probs=67.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENAL------ 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------ 107 (279)
+.+++.|+||+|.+|++++..|+..|. +|+++++++ ......++.+.. ..+..+. .-+|. .+++
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA--AVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAER 81 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999998 899999876 222223333321 2222211 11121 1222
Q ss_pred -CCCCEEEEccCCCCCC---C---CchhhHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671 108 -TGMDLVIIPAGVPRKP---G---MTRDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 108 -~~ADiVIitag~~~k~---g---~~r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T 158 (279)
...|+||+++|..... . ....+.+..|+.. .+.+.+.+.+..+.+.++++|
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~s 143 (262)
T PRK13394 82 FGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMG 143 (262)
T ss_pred cCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEc
Confidence 3489999999864211 1 1122344556655 666677763334445555554
No 132
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.78 E-value=0.00022 Score=67.35 Aligned_cols=116 Identities=21% Similarity=0.223 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEE----eCCCCHHhhhCCCCEEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGF----LGQPQLENALTGMDLVI 114 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~----~~~~d~~eal~~ADiVI 114 (279)
++.++.|+||+||+|.+++..|.+.+...||.++|.... ...-.|.... ....++.. ....++..+++++ .|+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~-~~~~v~~~~~D~~~~~~i~~a~~~~-~Vv 80 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGF-RSGRVTVILGDLLDANSISNAFQGA-VVV 80 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcc-cCCceeEEecchhhhhhhhhhccCc-eEE
Confidence 456899999999999999999999886679999998762 1111111110 11222221 1123457789999 777
Q ss_pred EccCCCC-CCCC-chhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 115 IPAGVPR-KPGM-TRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 115 itag~~~-k~g~-~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
+++..+. .-.. .+.-....|+...+.+++.+.+.+-+. +|+.|
T Consensus 81 h~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~-lIYtS 125 (361)
T KOG1430|consen 81 HCAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKR-LIYTS 125 (361)
T ss_pred EeccccCccccccchhhheeecchhHHHHHHHHHHhCCCE-EEEec
Confidence 7665432 2223 356667889999999999999887543 34433
No 133
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.78 E-value=0.00023 Score=67.93 Aligned_cols=113 Identities=18% Similarity=0.137 Sum_probs=68.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h--HHhhhhcccCCCe-EEE-EeCCCCHHhhhC----
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VTADISHMDTGAV-VRG-FLGQPQLENALT---- 108 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g--~~~DL~~~~~~~~-v~~-~~~~~d~~eal~---- 108 (279)
.+.+||.|+||+|++|++++..|+.+|+ +|++++++... . ...++........ +.. ....+++.++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~--~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~ 135 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY--NVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD 135 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence 3456999999999999999999999998 99999986521 1 1111111100111 111 111123444555
Q ss_pred CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156 (279)
Q Consensus 109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv 156 (279)
++|+||++++.+... ..+.+..|....+.+++.+++..-.-+|++
T Consensus 136 ~~D~Vi~~aa~~~~~---~~~~~~vn~~~~~~ll~aa~~~gv~r~V~i 180 (390)
T PLN02657 136 PVDVVVSCLASRTGG---VKDSWKIDYQATKNSLDAGREVGAKHFVLL 180 (390)
T ss_pred CCcEEEECCccCCCC---CccchhhHHHHHHHHHHHHHHcCCCEEEEE
Confidence 599999988753211 123456677888888888887654434433
No 134
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=97.78 E-value=0.00023 Score=64.49 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=61.3
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccCCCCC-
Q 023671 46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGVPRK- 122 (279)
Q Consensus 46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag~~~k- 122 (279)
|+||+|++|++++..|+..++ +++++.... ..|+.+. .++.+.++ +.|+||++|+....
T Consensus 2 ItGa~GfiG~~l~~~L~~~g~--~v~~~~~~~----~~Dl~~~------------~~l~~~~~~~~~d~Vih~A~~~~~~ 63 (306)
T PLN02725 2 VAGHRGLVGSAIVRKLEALGF--TNLVLRTHK----ELDLTRQ------------ADVEAFFAKEKPTYVILAAAKVGGI 63 (306)
T ss_pred cccCCCcccHHHHHHHHhCCC--cEEEeeccc----cCCCCCH------------HHHHHHHhccCCCEEEEeeeeeccc
Confidence 799999999999999988886 555543211 1233221 12333444 57999999975321
Q ss_pred --CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671 123 --PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156 (279)
Q Consensus 123 --~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv 156 (279)
......+.+..|+.....+++.+++.....+|+.
T Consensus 64 ~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~ 99 (306)
T PLN02725 64 HANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFL 99 (306)
T ss_pred chhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEe
Confidence 1123456778899999999999998764434443
No 135
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.77 E-value=0.00022 Score=66.93 Aligned_cols=99 Identities=18% Similarity=0.195 Sum_probs=65.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc----cC-------CCeEEEEeCCCCHHhhhC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DT-------GAVVRGFLGQPQLENALT 108 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~----~~-------~~~v~~~~~~~d~~eal~ 108 (279)
.+|||+|||+ |.+|+.++..|...+ +++++..++.. ..++... .. ..++.. ++|+.++++
T Consensus 6 ~~mkI~IiGa-Ga~G~alA~~La~~g---~v~l~~~~~~~--~~~i~~~~~~~~~l~~~~~l~~~i~~---t~d~~~a~~ 76 (341)
T PRK12439 6 REPKVVVLGG-GSWGTTVASICARRG---PTLQWVRSAET--ADDINDNHRNSRYLGNDVVLSDTLRA---TTDFAEAAN 76 (341)
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCC---CEEEEeCCHHH--HHHHHhcCCCcccCCCCcccCCCeEE---ECCHHHHHh
Confidence 4579999999 999999999999887 46777765421 1112211 00 112332 357778899
Q ss_pred CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671 109 GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 163 (279)
Q Consensus 109 ~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~ 163 (279)
++|+||++.. ...++++++++..+- ++..++.++|-++.
T Consensus 77 ~aDlVilavp----------------s~~~~~vl~~i~~~l~~~~~vIsl~kGi~~ 116 (341)
T PRK12439 77 CADVVVMGVP----------------SHGFRGVLTELAKELRPWVPVVSLVKGLEQ 116 (341)
T ss_pred cCCEEEEEeC----------------HHHHHHHHHHHHhhcCCCCEEEEEEeCCcC
Confidence 9999999862 234566666666553 66778888887764
No 136
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=97.76 E-value=0.00022 Score=64.81 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=66.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhh----hCCCCEEEEccCC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENA----LTGMDLVIIPAGV 119 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~ea----l~~ADiVIitag~ 119 (279)
|.|+||+|++|++++..|...|+ .+|+++|..........+........+. ..+.++.. +.+.|+||++|+.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~D~vvh~A~~ 76 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDNLRDGHKFLNLADLVIADYID---KEDFLDRLEKGAFGKIEAIFHQGAC 76 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEecCCCchhhhhhhheeeeccCc---chhHHHHHHhhccCCCCEEEECccc
Confidence 57999999999999999998884 3788888654211111111100000010 01112221 2489999999986
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
......+..+.+..|+.....+++.+.+... .++++|
T Consensus 77 ~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~--~~v~~S 113 (314)
T TIGR02197 77 SDTTETDGEYMMENNYQYSKRLLDWCAEKGI--PFIYAS 113 (314)
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHhCC--cEEEEc
Confidence 4322223455677899999999999887654 344444
No 137
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.75 E-value=0.00028 Score=65.66 Aligned_cols=69 Identities=26% Similarity=0.403 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc--------cC--CCeEEEEeCCCCHHhhhCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--------DT--GAVVRGFLGQPQLENALTGM 110 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~--------~~--~~~v~~~~~~~d~~eal~~A 110 (279)
+|||+|||+ |.+|..++..|...|+ +|.++|+++.... ++... .. ...+.. ++++.++++++
T Consensus 4 ~m~I~iIG~-G~mG~~ia~~L~~~G~--~V~~~~r~~~~~~--~i~~~~~~~~~~~g~~~~~~~~~---~~~~~e~~~~a 75 (328)
T PRK14618 4 GMRVAVLGA-GAWGTALAVLAASKGV--PVRLWARRPEFAA--ALAAERENREYLPGVALPAELYP---TADPEEALAGA 75 (328)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--eEEEEeCCHHHHH--HHHHhCcccccCCCCcCCCCeEE---eCCHHHHHcCC
Confidence 579999999 9999999999999998 9999999752111 11111 00 011222 24667788999
Q ss_pred CEEEEcc
Q 023671 111 DLVIIPA 117 (279)
Q Consensus 111 DiVIita 117 (279)
|+||++.
T Consensus 76 D~Vi~~v 82 (328)
T PRK14618 76 DFAVVAV 82 (328)
T ss_pred CEEEEEC
Confidence 9999986
No 138
>PRK08643 acetoin reductase; Validated
Probab=97.74 E-value=0.0014 Score=57.84 Aligned_cols=115 Identities=19% Similarity=0.249 Sum_probs=65.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT 108 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~ 108 (279)
+++.|+||+|.+|.+++..|+..|. +|+++|.+.. .....++.+.. ..+..+. .-++ +.+. +.
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 78 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGF--KVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFG 78 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999997 9999998752 22223333211 1222111 1112 1122 23
Q ss_pred CCCEEEEccCCCCC-CC--Cch---hhHHHhhHHH----HHHHHHHHHHhCCCceEEEecCC
Q 023671 109 GMDLVIIPAGVPRK-PG--MTR---DDLFNINAGI----VRTLCEGIAKCCPNATVNLISNP 160 (279)
Q Consensus 109 ~ADiVIitag~~~k-~g--~~r---~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TNP 160 (279)
+.|++|+++|.... +- .+. ...+..|+.. .+.+.+.+.+..+++.++++|..
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~ 140 (256)
T PRK08643 79 DLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQ 140 (256)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcc
Confidence 68999999986422 11 111 2234456543 44444445444445666666643
No 139
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=97.73 E-value=0.0003 Score=65.12 Aligned_cols=118 Identities=17% Similarity=0.283 Sum_probs=71.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHh---hhhcccCC---CeEEEEeCCCCHHhhhCCCCE
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA---DISHMDTG---AVVRGFLGQPQLENALTGMDL 112 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~---DL~~~~~~---~~v~~~~~~~d~~eal~~ADi 112 (279)
...|||+|+|+ |.+|..++..|...|+ +|.+++++....... .+...... ..+... ++ .++...+|+
T Consensus 3 ~~~m~I~IiG~-GaiG~~lA~~L~~~g~--~V~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~---~~-~~~~~~~D~ 75 (313)
T PRK06249 3 SETPRIGIIGT-GAIGGFYGAMLARAGF--DVHFLLRSDYEAVRENGLQVDSVHGDFHLPPVQAY---RS-AEDMPPCDW 75 (313)
T ss_pred CcCcEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCCHHHHHhCCeEEEeCCCCeeecCceEE---cc-hhhcCCCCE
Confidence 45679999999 9999999999999887 999999865211100 11100000 111221 23 245788999
Q ss_pred EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (279)
Q Consensus 113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~ 186 (279)
||++.-.. . ..+.++.+... .|++.++...|=++.-.. +.+ -+|+.+|++-
T Consensus 76 vilavK~~----~------------~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~-----l~~--~~~~~~v~~g 127 (313)
T PRK06249 76 VLVGLKTT----A------------NALLAPLIPQVAAPDAKVLLLQNGLGVEEQ-----LRE--ILPAEHLLGG 127 (313)
T ss_pred EEEEecCC----C------------hHhHHHHHhhhcCCCCEEEEecCCCCcHHH-----HHH--HCCCCcEEEE
Confidence 99986322 1 12334444443 378888888898875432 232 3677777764
No 140
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.70 E-value=0.00029 Score=64.15 Aligned_cols=64 Identities=23% Similarity=0.252 Sum_probs=45.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
|||+|||. |.+|.+++..|...|+ +|.++|+++ ....+.+... +.. .+++. +++++||+||++.
T Consensus 1 m~I~IIG~-G~mG~sla~~L~~~g~--~V~~~d~~~~~~~~a~~~g~------~~~--~~~~~-~~~~~aDlVilav 65 (279)
T PRK07417 1 MKIGIVGL-GLIGGSLGLDLRSLGH--TVYGVSRRESTCERAIERGL------VDE--ASTDL-SLLKDCDLVILAL 65 (279)
T ss_pred CeEEEEee-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHCCC------ccc--ccCCH-hHhcCCCEEEEcC
Confidence 58999998 9999999999999887 999999875 2111221110 111 12343 5689999999986
No 141
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=97.69 E-value=7.6e-05 Score=64.78 Aligned_cols=166 Identities=17% Similarity=0.120 Sum_probs=93.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEE--EeCCCCHHhhhCCC--CEEEEccC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRG--FLGQPQLENALTGM--DLVIIPAG 118 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~--~~~~~d~~eal~~A--DiVIitag 118 (279)
|.|+||+|++|+.++..|+.++. +++.+.... ......+... ..... .....++.+.+++. |.||++|+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~--~v~~~~~~~~~~~~~~~~~~----~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~ 74 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGH--EVIVLSRSSNSESFEEKKLN----VEFVIGDLTDKEQLEKLLEKANIDVVIHLAA 74 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTT--EEEEEESCSTGGHHHHHHTT----EEEEESETTSHHHHHHHHHHHTESEEEEEBS
T ss_pred EEEEccCCHHHHHHHHHHHHcCC--ccccccccccccccccccce----EEEEEeeccccccccccccccCceEEEEeec
Confidence 68999999999999999999998 666555544 2111111000 00000 01112345566666 99999998
Q ss_pred CCCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHHH
Q 023671 119 VPRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRANT 196 (279)
Q Consensus 119 ~~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~ 196 (279)
.... ......+.+..|+...+.+++.+.+.... .+++++. ..+.-.--...+.....+.+...+|.+.....++-.
T Consensus 75 ~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~sS-~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~ 152 (236)
T PF01370_consen 75 FSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVK-RFIFLSS-ASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLR 152 (236)
T ss_dssp SSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTS-EEEEEEE-GGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc-ccccccc-cccccccccccccccccccccccccccccccccccc
Confidence 6521 01234567888999999999999998874 4444432 211100000000000001122234544444445555
Q ss_pred HHHHHcCCCCCCCc-ceeecCC
Q 023671 197 FVAEVLGLDPRDVD-VPVVGGH 217 (279)
Q Consensus 197 ~la~~l~v~~~~V~-~~ViGeh 217 (279)
..+++.+++...++ ..++|.+
T Consensus 153 ~~~~~~~~~~~~~R~~~vyG~~ 174 (236)
T PF01370_consen 153 DYAKKYGLRVTILRPPNVYGPG 174 (236)
T ss_dssp HHHHHHTSEEEEEEESEEESTT
T ss_pred cccccccccccccccccccccc
Confidence 56666688888887 5588987
No 142
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.69 E-value=0.00015 Score=57.74 Aligned_cols=72 Identities=21% Similarity=0.255 Sum_probs=47.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc--cCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM--DTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~--~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
||+|+||+|.+|+.+...|...+.+.-+.+++..+..|+...-.+. .....+.... .+ .+.+.++|+||.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~Dvvf~a~ 74 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED--AD-PEELSDVDVVFLAL 74 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE--TS-GHHHTTESEEEE-S
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee--cc-hhHhhcCCEEEecC
Confidence 7999999999999999999998877777777776523332211111 1112233221 24 36689999999986
No 143
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=97.68 E-value=0.00029 Score=66.26 Aligned_cols=71 Identities=23% Similarity=0.396 Sum_probs=48.5
Q ss_pred EEEEEcCCCchHHHHHHHHHhCC------CCcEEEEEeCCC---chhHHhhhh--cccC--------CCeEEEEeCCCCH
Q 023671 43 KVAILGAAGGIGQPLAMLMKINP------LVSVLHLYDVVN---TPGVTADIS--HMDT--------GAVVRGFLGQPQL 103 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~------~~~ev~L~D~~~---~~g~~~DL~--~~~~--------~~~v~~~~~~~d~ 103 (279)
||+|||+ |..|.++|..|..++ ...+|.|+.+++ .......+. |... ..+++. ++|+
T Consensus 1 kI~VIGa-G~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~a---t~dl 76 (342)
T TIGR03376 1 RVAVVGS-GNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVA---VPDL 76 (342)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEE---ECCH
Confidence 6999999 999999999999877 123999998843 112222222 2111 112333 3588
Q ss_pred HhhhCCCCEEEEcc
Q 023671 104 ENALTGMDLVIIPA 117 (279)
Q Consensus 104 ~eal~~ADiVIita 117 (279)
.+++++||+||++.
T Consensus 77 ~eal~~ADiIIlAV 90 (342)
T TIGR03376 77 VEAAKGADILVFVI 90 (342)
T ss_pred HHHHhcCCEEEEEC
Confidence 88999999999985
No 144
>PRK05865 hypothetical protein; Provisional
Probab=97.67 E-value=0.00019 Score=74.69 Aligned_cols=104 Identities=17% Similarity=0.168 Sum_probs=70.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~ 120 (279)
|||.|+||+|++|++++..|+..|+ +|+++|.+.... +.. . ...+.. .....++.++++++|+||++|+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~--~Vv~l~R~~~~~----~~~-~-v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~ 72 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH--EVVGIARHRPDS----WPS-S-ADFIAADIRDATAVESAMTGADVVAHCAWVR 72 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC--EEEEEECCchhh----ccc-C-ceEEEeeCCCHHHHHHHHhCCCEEEECCCcc
Confidence 5899999999999999999999998 999999764110 000 0 011111 111123456788999999999753
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv 161 (279)
.. ....|+.....+++.+.+.+.. .++++|.+.
T Consensus 73 ~~-------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~ 105 (854)
T PRK05865 73 GR-------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH 105 (854)
T ss_pred cc-------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH
Confidence 21 3467888889999998876543 455666654
No 145
>PRK12829 short chain dehydrogenase; Provisional
Probab=97.65 E-value=0.0013 Score=58.23 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=33.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
..+.+++.|+||+|.+|+.++..|+.+|+ +|+++++++
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~--~V~~~~r~~ 45 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGA--RVHVCDVSE 45 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 34567999999999999999999999998 899999875
No 146
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=97.64 E-value=0.0004 Score=63.10 Aligned_cols=107 Identities=16% Similarity=0.085 Sum_probs=66.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hh-HHhhhhcccCCCeEEEEe-CC---CCHHhhhC--CCCEEE
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PG-VTADISHMDTGAVVRGFL-GQ---PQLENALT--GMDLVI 114 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g-~~~DL~~~~~~~~v~~~~-~~---~d~~eal~--~ADiVI 114 (279)
||.|+||+|++|..++..|...+. +|+++|.... .. ....+... ..++.+. .. .++.++++ +.|+||
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~--~V~~~~~~~~~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~d~vv 75 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH--EVVVLDNLSNGSPEALKRGERI---TRVTFVEGDLRDRELLDRLFEEHKIDAVI 75 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC--eEEEEeCCCccchhhhhhhccc---cceEEEECCCCCHHHHHHHHHhCCCcEEE
Confidence 688999999999999999999887 8888886431 11 11111110 0122211 11 12333443 699999
Q ss_pred EccCCCCCC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceE
Q 023671 115 IPAGVPRKP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATV 154 (279)
Q Consensus 115 itag~~~k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~v 154 (279)
+++|..... .....+.+..|+.....+++.+.+.....++
T Consensus 76 ~~ag~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v 117 (328)
T TIGR01179 76 HFAGLIAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFI 117 (328)
T ss_pred ECccccCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEE
Confidence 999864321 1223455678999999999988876544444
No 147
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.64 E-value=0.00077 Score=64.32 Aligned_cols=75 Identities=23% Similarity=0.250 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|+||.|||| |+||+.+|..|++.+- .+|.+.|+... ...+.+..+... ...+.. .....+.+.+++.|+||.++.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~-~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTIADRSKEKCARIAELIGGKVEALQVDA-ADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEEEeCCHHHHHHHHhhccccceeEEecc-cChHHHHHHHhcCCEEEEeCC
Confidence 579999999 9999999999999884 59999999752 112222211110 011111 112245678899999999974
No 148
>PRK08267 short chain dehydrogenase; Provisional
Probab=97.64 E-value=0.00032 Score=62.30 Aligned_cols=113 Identities=23% Similarity=0.285 Sum_probs=64.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEE----eCCCCHHhhh--------
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGF----LGQPQLENAL-------- 107 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~----~~~~d~~eal-------- 107 (279)
+++.|+||+|.+|..++..|+.+|. +|+++|++... ....++.. ..+..+ ....++.+.+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 75 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW--RVGAYDINEAGLAALAAELGA----GNAWTGALDVTDRAAWDAALADFAAATG 75 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC----CceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999997 99999986521 11112211 111111 1111122222
Q ss_pred CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHH---hCCCceEEEecCC
Q 023671 108 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAK---CCPNATVNLISNP 160 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~---~~p~a~viv~TNP 160 (279)
...|+||+++|...... .+ -...+..|+.....+.+.+.+ ..+.+.+++++..
T Consensus 76 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~ 137 (260)
T PRK08267 76 GRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSA 137 (260)
T ss_pred CCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCch
Confidence 34599999998753221 11 233456676655555444432 2344556655543
No 149
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=97.64 E-value=0.00041 Score=61.10 Aligned_cols=114 Identities=14% Similarity=0.235 Sum_probs=65.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------- 107 (279)
.++|.|+|++|.+|.+++..|+.+|+ +|+++|++.. .....++... ..++..+. ...| +.+++
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 79 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA--KVVIADLNDEAAAAAAEALQKA--GGKAIGVAMDVTDEEAINAGIDYAVETF 79 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999998 9999998762 2222333221 11222211 1112 22222
Q ss_pred CCCCEEEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN 159 (279)
.+.|+||+++|..... ..+ -.+.+..|+.. .+.+.+.+.+.... .++++|.
T Consensus 80 ~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss 140 (258)
T PRK12429 80 GGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGG-RIINMAS 140 (258)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCe-EEEEEcc
Confidence 3689999999864221 111 12234445444 66666666655433 4554443
No 150
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.64 E-value=0.00032 Score=64.28 Aligned_cols=91 Identities=23% Similarity=0.245 Sum_probs=59.8
Q ss_pred cccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC
Q 023671 22 NLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG 99 (279)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~ 99 (279)
|.-..=|.+++.......+.+||.|+|+ |.+|.++++.|...| +.+|.++|++. ++..+.++.+.. +......
T Consensus 108 NTD~~G~~~~l~~~~~~~~~k~vlIlGa-GGaaraia~aL~~~G-~~~I~I~nR~~~ka~~la~~l~~~~--~~~~~~~- 182 (284)
T PRK12549 108 NTDWSGFAESFRRGLPDASLERVVQLGA-GGAGAAVAHALLTLG-VERLTIFDVDPARAAALADELNARF--PAARATA- 182 (284)
T ss_pred cCCHHHHHHHHHhhccCccCCEEEEECC-cHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhC--CCeEEEe-
Confidence 3333345555543322345579999999 999999999999888 46899999986 444555554432 1122211
Q ss_pred CCCHHhhhCCCCEEEEcc
Q 023671 100 QPQLENALTGMDLVIIPA 117 (279)
Q Consensus 100 ~~d~~eal~~ADiVIita 117 (279)
.+++++.++++|+||.|.
T Consensus 183 ~~~~~~~~~~aDiVInaT 200 (284)
T PRK12549 183 GSDLAAALAAADGLVHAT 200 (284)
T ss_pred ccchHhhhCCCCEEEECC
Confidence 234456789999999983
No 151
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.62 E-value=0.00043 Score=65.86 Aligned_cols=74 Identities=20% Similarity=0.348 Sum_probs=54.2
Q ss_pred cCCCcccchhhhhhh------------hccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhh
Q 023671 18 LYPPNLQNSCLRQAK------------CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI 85 (279)
Q Consensus 18 ~~~~~~~~~~~~~~~------------~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL 85 (279)
-.||+.--.+||... .++. ...+||+|||+.|.+|.+++..|...|+ +|.++|++..
T Consensus 65 ~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~~--~~~~~I~IiGG~GlmG~slA~~l~~~G~--~V~~~d~~~~------- 133 (374)
T PRK11199 65 GVPPDLIEDVLRRVMRESYSSENDKGFKTLN--PDLRPVVIVGGKGQLGRLFAKMLTLSGY--QVRILEQDDW------- 133 (374)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhHHhcccccC--cccceEEEEcCCChhhHHHHHHHHHCCC--eEEEeCCCcc-------
Confidence 356666666776433 2222 2347999999559999999999999998 8999997420
Q ss_pred hcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 86 SHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 86 ~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
++..+++++||+||++.
T Consensus 134 ---------------~~~~~~~~~aDlVilav 150 (374)
T PRK11199 134 ---------------DRAEDILADAGMVIVSV 150 (374)
T ss_pred ---------------hhHHHHHhcCCEEEEeC
Confidence 12356789999999996
No 152
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=97.61 E-value=0.00096 Score=64.24 Aligned_cols=128 Identities=18% Similarity=0.200 Sum_probs=72.7
Q ss_pred ccCCCcccch----hhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCC
Q 023671 17 HLYPPNLQNS----CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA 92 (279)
Q Consensus 17 ~~~~~~~~~~----~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~ 92 (279)
|++|.+-.++ ++-+..-+... .++++|.|+||+|.+|..++..|.++|. +|+++|+++.. ....+.......
T Consensus 151 ~~~~~~~~~~~~~~~~d~~~~ta~s-l~gK~VLITGASgGIG~aLA~~La~~G~--~Vi~l~r~~~~-l~~~~~~~~~~v 226 (406)
T PRK07424 151 HFDNQNAYYCGTFTLVDKLMGTALS-LKGKTVAVTGASGTLGQALLKELHQQGA--KVVALTSNSDK-ITLEINGEDLPV 226 (406)
T ss_pred EeccccceeeeeEEEeehhcCcccC-CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHH-HHHHHhhcCCCe
Confidence 6677755543 33444433331 3456899999999999999999999997 99999986521 111111111011
Q ss_pred e-EEE-EeCCCCHHhhhCCCCEEEEccCCCCCCCCch---hhHHHhhHH----HHHHHHHHHHHh
Q 023671 93 V-VRG-FLGQPQLENALTGMDLVIIPAGVPRKPGMTR---DDLFNINAG----IVRTLCEGIAKC 148 (279)
Q Consensus 93 ~-v~~-~~~~~d~~eal~~ADiVIitag~~~k~g~~r---~d~~~~N~~----i~~~i~~~I~~~ 148 (279)
. +.. ....+++.+.+.+.|++|++||.......+. .+.++.|.. +++.+.+.+++.
T Consensus 227 ~~v~~Dvsd~~~v~~~l~~IDiLInnAGi~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~ 291 (406)
T PRK07424 227 KTLHWQVGQEAALAELLEKVDILIINHGINVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTN 291 (406)
T ss_pred EEEEeeCCCHHHHHHHhCCCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 111 1111123345678999999998653322222 234555655 455555555443
No 153
>PRK09135 pteridine reductase; Provisional
Probab=97.61 E-value=0.0016 Score=56.92 Aligned_cols=104 Identities=18% Similarity=0.179 Sum_probs=60.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------ 107 (279)
.++|.|+||+|++|++++..|+.+|. +|+++|+.. ......++.+... ..+..+. .-+| ..+++
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY--RVAIHYHRSAAEADALAAELNALRP-GSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999998 999999753 1222223332211 1122111 1122 12222
Q ss_pred -CCCCEEEEccCCCCC--CC-Cc---hhhHHHhhHHHHHHHHHHHHH
Q 023671 108 -TGMDLVIIPAGVPRK--PG-MT---RDDLFNINAGIVRTLCEGIAK 147 (279)
Q Consensus 108 -~~ADiVIitag~~~k--~g-~~---r~d~~~~N~~i~~~i~~~I~~ 147 (279)
.+.|+||+++|.... .. .+ ..+.+..|+.....+.+.+.+
T Consensus 83 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~ 129 (249)
T PRK09135 83 FGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAP 129 (249)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHH
Confidence 357999999985321 11 11 234556777666666665543
No 154
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.60 E-value=0.00046 Score=62.12 Aligned_cols=96 Identities=15% Similarity=0.182 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
++||+|||+ |.+|..++..+...+. ..+|.++|+++.. ...+.+.. .+.. .++..+.++++|+||++..
T Consensus 2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~--~~~~~~~~---g~~~---~~~~~~~~~~advVil~v~- 71 (267)
T PRK11880 2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK--RAALAEEY---GVRA---ATDNQEAAQEADVVVLAVK- 71 (267)
T ss_pred CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH--HHHHHHhc---CCee---cCChHHHHhcCCEEEEEcC-
Confidence 579999998 9999999999988772 2488999987521 11222210 1121 2344667899999999862
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd 162 (279)
+ ..++++++.+..+. +..|+..+|-+.
T Consensus 72 ---~------------~~~~~v~~~l~~~~-~~~vvs~~~gi~ 98 (267)
T PRK11880 72 ---P------------QVMEEVLSELKGQL-DKLVVSIAAGVT 98 (267)
T ss_pred ---H------------HHHHHHHHHHHhhc-CCEEEEecCCCC
Confidence 1 22445555555443 456666677653
No 155
>PLN02253 xanthoxin dehydrogenase
Probab=97.59 E-value=0.0015 Score=58.61 Aligned_cols=114 Identities=17% Similarity=0.251 Sum_probs=64.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------ 107 (279)
+.+++.|+||+|.+|..++..|+..|. +|+++|.++. .....++.. ..++..+. .-.| +.+++
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 91 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGA--KVCIVDLQDDLGQNVCDSLGG---EPNVCFFHCDVTVEDDVSRAVDFTVDK 91 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHhcC---CCceEEEEeecCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999997 9999998652 122222221 11222211 1112 22222
Q ss_pred -CCCCEEEEccCCCCCC-C----Cch---hhHHHhhHHHHHH----HHHHHHHhCCCceEEEecC
Q 023671 108 -TGMDLVIIPAGVPRKP-G----MTR---DDLFNINAGIVRT----LCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 108 -~~ADiVIitag~~~k~-g----~~r---~d~~~~N~~i~~~----i~~~I~~~~p~a~viv~TN 159 (279)
...|++|++||..... + .+. ...+..|+..... ..+.+.+. ..+.+++++.
T Consensus 92 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~-~~g~ii~isS 155 (280)
T PLN02253 92 FGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPL-KKGSIVSLCS 155 (280)
T ss_pred hCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhc-CCceEEEecC
Confidence 2689999999875321 1 111 2345666554433 44444332 3455666554
No 156
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.59 E-value=0.0015 Score=57.22 Aligned_cols=36 Identities=22% Similarity=0.274 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.++|.|+||+|.+|..++..|++.|. +|++++++.
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~--~V~~~~r~~ 39 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGA--RVVVTDRNE 39 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999999998 899999876
No 157
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.001 Score=63.15 Aligned_cols=114 Identities=18% Similarity=0.240 Sum_probs=74.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc------hhHH----hhhh----cccCCCeEEEEeCCCCHHhhh
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT------PGVT----ADIS----HMDTGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~------~g~~----~DL~----~~~~~~~v~~~~~~~d~~eal 107 (279)
++|+|||- |+||..+|..++.+|. +|+-+|+|+. .|+. .++. ......+++. |+|. +.+
T Consensus 10 ~~I~ViGL-GYVGLPlA~~fA~~G~--~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra---Ttd~-~~l 82 (436)
T COG0677 10 ATIGVIGL-GYVGLPLAAAFASAGF--KVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA---TTDP-EEL 82 (436)
T ss_pred eEEEEEcc-ccccHHHHHHHHHcCC--ceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE---ecCh-hhc
Confidence 79999998 9999999999999998 9999999971 1221 1111 1111334554 3564 568
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc--eEEEecCCCCchHHHH
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA--TVNLISNPVNSTVPIA 168 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a--~viv~TNPvd~~t~~~ 168 (279)
+.||++|+|...|.+...+ -.+..+.+-++.|.++-..+ +++=.|-|.+..-.++
T Consensus 83 ~~~dv~iI~VPTPl~~~~~------pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~ 139 (436)
T COG0677 83 KECDVFIICVPTPLKKYRE------PDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVV 139 (436)
T ss_pred ccCCEEEEEecCCcCCCCC------CChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHH
Confidence 8999999999888654211 12344555566666654333 3444478887766554
No 158
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.58 E-value=0.0011 Score=60.66 Aligned_cols=57 Identities=19% Similarity=0.248 Sum_probs=40.5
Q ss_pred cCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 18 LYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+-|| .|.-.++..........+.++|.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 18 ~~~~-~~~~~~~~~~~~~~~~~~~k~vlItGasggIG~~la~~La~~G~--~Vi~~~R~~ 74 (293)
T PRK05866 18 MRPP-ISPQLLINRPPRQPVDLTGKRILLTGASSGIGEAAAEQFARRGA--TVVAVARRE 74 (293)
T ss_pred cCCC-CCchhhcCCCCCCCcCCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCH
Confidence 3344 44444443333222223446899999999999999999999997 999999875
No 159
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=97.58 E-value=0.0032 Score=55.73 Aligned_cols=117 Identities=13% Similarity=0.179 Sum_probs=67.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT 108 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~ 108 (279)
++|.|+||+|.+|.+++..|+++|. +|+++|++. ......++........+..+. ..++ ...+ +.
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGY--RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999997 999999875 222222232211111222211 1122 1111 24
Q ss_pred CCCEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecCC
Q 023671 109 GMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISNP 160 (279)
Q Consensus 109 ~ADiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNP 160 (279)
..|+||+++|.+... ..+.. ..+..|+. +.+.+.+.+.+..+++.++++|..
T Consensus 81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~ 142 (259)
T PRK12384 81 RVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSK 142 (259)
T ss_pred CCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCc
Confidence 679999999865322 11222 22344544 355666666555545666666654
No 160
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.57 E-value=0.00024 Score=57.58 Aligned_cols=102 Identities=22% Similarity=0.234 Sum_probs=57.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
..+||+|||+ |.||.+++..|...|+ +|.-+-... ...+.++.+.- ..... .++.+.+++||++|++..
T Consensus 9 ~~l~I~iIGa-GrVG~~La~aL~~ag~--~v~~v~srs-~~sa~~a~~~~--~~~~~----~~~~~~~~~aDlv~iavp- 77 (127)
T PF10727_consen 9 ARLKIGIIGA-GRVGTALARALARAGH--EVVGVYSRS-PASAERAAAFI--GAGAI----LDLEEILRDADLVFIAVP- 77 (127)
T ss_dssp ---EEEEECT-SCCCCHHHHHHHHTTS--EEEEESSCH-H-HHHHHHC----TT---------TTGGGCC-SEEEE-S--
T ss_pred CccEEEEECC-CHHHHHHHHHHHHCCC--eEEEEEeCC-ccccccccccc--ccccc----cccccccccCCEEEEEec-
Confidence 3569999999 9999999999999998 776664332 11222222221 11111 134577899999999962
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHh--C-CCceEEEe--cCCCCchHHH
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKC--C-PNATVNLI--SNPVNSTVPI 167 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~--~-p~a~viv~--TNPvd~~t~~ 167 (279)
+ ..+.+++++|..+ . |+.+|+=. +-+++++.++
T Consensus 78 ----D-----------daI~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p~ 115 (127)
T PF10727_consen 78 ----D-----------DAIAEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAPA 115 (127)
T ss_dssp ----C-----------CHHHHHHHHHHCC--S-TT-EEEES-SS--GGGGHHH
T ss_pred ----h-----------HHHHHHHHHHHHhccCCCCcEEEECCCCChHHhhhhH
Confidence 1 1266788888876 2 45444433 3567777653
No 161
>PRK12320 hypothetical protein; Provisional
Probab=97.56 E-value=0.00061 Score=69.62 Aligned_cols=100 Identities=13% Similarity=0.095 Sum_probs=65.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~ 120 (279)
|||.|+||+||+|++++..|..+|+ +|..+|..... ..+.. ...+.. ... ..+.+++.++|+||++++..
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~--~Vi~ldr~~~~-----~~~~~-ve~v~~Dl~d-~~l~~al~~~D~VIHLAa~~ 71 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH--TVSGIAQHPHD-----ALDPR-VDYVCASLRN-PVLQELAGEADAVIHLAPVD 71 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC--EEEEEeCChhh-----cccCC-ceEEEccCCC-HHHHHHhcCCCEEEEcCccC
Confidence 5899999999999999999999998 99999975421 11100 001111 010 12345678999999999753
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
. . +....|+....++++.+++.+. .++++|
T Consensus 72 ~--~----~~~~vNv~Gt~nLleAA~~~Gv--RiV~~S 101 (699)
T PRK12320 72 T--S----APGGVGITGLAHVANAAARAGA--RLLFVS 101 (699)
T ss_pred c--c----chhhHHHHHHHHHHHHHHHcCC--eEEEEE
Confidence 1 1 1124688888899998887654 344444
No 162
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.56 E-value=0.00061 Score=60.55 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe--CC---CCHHhhh-CCCCEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL--GQ---PQLENAL-TGMDLV 113 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~--~~---~d~~eal-~~ADiV 113 (279)
+++||.|+||+|++|+.++..|+.+++ +|+++.++....... +.. ...+..+. -+ .++.+.+ .++|+|
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~--~V~~~~R~~~~~~~~-~~~---~~~~~~~~~Dl~d~~~~l~~~~~~~~d~v 89 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGF--AVKAGVRDVDKAKTS-LPQ---DPSLQIVRADVTEGSDKLVEAIGDDSDAV 89 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCC--EEEEEecCHHHHHHh-ccc---CCceEEEEeeCCCCHHHHHHHhhcCCCEE
Confidence 357999999999999999999999887 888876654211110 111 01122111 01 1234556 689999
Q ss_pred EEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 114 IIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 114 Iitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
|+++|.....+. .+.+..|......+++.+.+....-+|++.|
T Consensus 90 i~~~g~~~~~~~--~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS 132 (251)
T PLN00141 90 ICATGFRRSFDP--FAPWKVDNFGTVNLVEACRKAGVTRFILVSS 132 (251)
T ss_pred EECCCCCcCCCC--CCceeeehHHHHHHHHHHHHcCCCEEEEEcc
Confidence 998875422111 1112345555677777777655444444434
No 163
>PRK07680 late competence protein ComER; Validated
Probab=97.55 E-value=0.00053 Score=62.19 Aligned_cols=97 Identities=18% Similarity=0.234 Sum_probs=63.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~--~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
|||+|||+ |.+|..++..|...+.. .+|.++|++... ...+.+. ...+... .+..+.++++|+||++.-
T Consensus 1 m~I~iIG~-G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~--~~~~~~~--~~g~~~~---~~~~~~~~~aDiVilav~- 71 (273)
T PRK07680 1 MNIGFIGT-GNMGTILIEAFLESGAVKPSQLTITNRTPAK--AYHIKER--YPGIHVA---KTIEEVISQSDLIFICVK- 71 (273)
T ss_pred CEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCHHH--HHHHHHH--cCCeEEE---CCHHHHHHhCCEEEEecC-
Confidence 48999998 99999999999888742 479999987521 1222221 1123322 245677899999999861
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN 162 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd 162 (279)
+ ..+.++++.+..+- ++.+|+.++|++.
T Consensus 72 ---p------------~~~~~vl~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 72 ---P------------LDIYPLLQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred ---H------------HHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 1 12344555555443 5678888888774
No 164
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.55 E-value=0.00074 Score=62.28 Aligned_cols=69 Identities=25% Similarity=0.220 Sum_probs=48.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.+||+|||+ |.+|..++..|...++..+|.++|+++. ...+.+ .. ..... ..+..+++++||+||++..
T Consensus 6 ~~~I~IIG~-G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~---~g--~~~~~---~~~~~~~~~~aDvViiavp 75 (307)
T PRK07502 6 FDRVALIGI-GLIGSSLARAIRRLGLAGEIVGADRSAETRARARE---LG--LGDRV---TTSAAEAVKGADLVILCVP 75 (307)
T ss_pred CcEEEEEee-CHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh---CC--CCcee---cCCHHHHhcCCCEEEECCC
Confidence 368999998 9999999999998886568999998752 111111 11 11111 1245677899999999974
No 165
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=97.55 E-value=0.00091 Score=61.63 Aligned_cols=112 Identities=13% Similarity=0.037 Sum_probs=69.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-hhhh----c-----ccCC-CeEEEEeCC----------C
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-ADIS----H-----MDTG-AVVRGFLGQ----------P 101 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~-~DL~----~-----~~~~-~~v~~~~~~----------~ 101 (279)
+|.|+||+|++|++++..|+..+...+|+++.++...... ..+. . .... .++....+. .
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~ 80 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA 80 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence 4789999999999999999988854489999876521111 0111 0 0000 234332211 1
Q ss_pred CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEE
Q 023671 102 QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVN 155 (279)
Q Consensus 102 d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~vi 155 (279)
++.+...++|+||++|+.... .....++...|+.....+++...+.....++.
T Consensus 81 ~~~~~~~~~d~vih~a~~~~~-~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~ 133 (367)
T TIGR01746 81 EWERLAENVDTIVHNGALVNW-VYPYSELRAANVLGTREVLRLAASGRAKPLHY 133 (367)
T ss_pred HHHHHHhhCCEEEeCCcEecc-CCcHHHHhhhhhHHHHHHHHHHhhCCCceEEE
Confidence 233446789999999975432 22334566788888888988888765544333
No 166
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.53 E-value=0.0007 Score=60.89 Aligned_cols=95 Identities=14% Similarity=0.244 Sum_probs=60.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEE-eCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLY-DVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~-D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|||++||. |.+|..++..|+..++ ..+|+++ |+++.. ...+... .+.. ..+..++++++|+||++..
T Consensus 1 ~kI~~IG~-G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~--~~~~~~~----g~~~---~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGA-GKMAEAIARGLVASGVVPPSRISTADDSNPAR--RDVFQSL----GVKT---AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECC-cHHHHHHHHHHHHCCCCCcceEEEEeCCCHHH--HHHHHHc----CCEE---eCChHHHHhcCCEEEEEEC
Confidence 68999998 9999999999998875 4578888 765421 2222221 1222 1244677899999999871
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCC
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVN 162 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd 162 (279)
| ..++++.+.+.... |+.++|..++...
T Consensus 71 -~---------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~ 99 (266)
T PLN02688 71 -P---------------QVVKDVLTELRPLLSKDKLLVSVAAGIT 99 (266)
T ss_pred -c---------------HHHHHHHHHHHhhcCCCCEEEEecCCCc
Confidence 2 12344444554443 5666665555553
No 167
>PRK07102 short chain dehydrogenase; Provisional
Probab=97.53 E-value=0.0013 Score=57.77 Aligned_cols=116 Identities=19% Similarity=0.059 Sum_probs=66.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh----CCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL----TGM 110 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal----~~A 110 (279)
|++|.|+||+|.+|..++..|+..|. +|+++|+++. .....++.... ..++..+.. -+| +++.+ ...
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 77 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGA--RLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDSLPALP 77 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhhcC
Confidence 35899999999999999999999997 8999998762 22223332211 122332211 112 22222 245
Q ss_pred CEEEEccCCCCCC---CCchh---hHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671 111 DLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (279)
Q Consensus 111 DiVIitag~~~k~---g~~r~---d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN 159 (279)
|++|+++|..... ..+.. +.+..|+.....+.+.+.+. ...+.++++|-
T Consensus 78 d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 135 (243)
T PRK07102 78 DIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISS 135 (243)
T ss_pred CEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 9999998853211 22222 34566766555555555443 23455665553
No 168
>PRK07806 short chain dehydrogenase; Provisional
Probab=97.53 E-value=0.00071 Score=59.45 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=66.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------ 107 (279)
.+++.|+||+|++|.+++..|+.+|+ +|++++++.. .....++.... .++..+. .-++ +.+.+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~--~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA--HVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 45899999999999999999999997 8988887641 11122232211 1122111 1112 11122
Q ss_pred -CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671 108 -TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 159 (279)
Q Consensus 108 -~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN 159 (279)
.+.|+||+++|.......+..+.+..|......+++.+.+.. ..+.++++|.
T Consensus 82 ~~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 82 FGGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred CCCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeC
Confidence 368999999875422111223344567666666777776653 2345555543
No 169
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=97.52 E-value=0.0013 Score=57.57 Aligned_cols=114 Identities=17% Similarity=0.216 Sum_probs=64.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh-------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal------- 107 (279)
.++|.|+||+|++|+.++..|+..|. +|+++|.+.. .....++.... .++..+.. ..| .++.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA--KVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999998 9999998762 22222333221 12222111 112 11222
Q ss_pred CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHH----HhCCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIA----KCCPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~----~~~p~a~viv~TN 159 (279)
...|++|+++|...... .+. ...+..|+.....+.+.+. +. +.+.+++++.
T Consensus 79 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~iss 139 (250)
T TIGR03206 79 GPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVER-GAGRIVNIAS 139 (250)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCeEEEEECc
Confidence 35899999998532111 111 2235566665555544443 33 3344555543
No 170
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.52 E-value=0.00064 Score=63.87 Aligned_cols=100 Identities=22% Similarity=0.260 Sum_probs=65.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi 115 (279)
+.+.++|.|+||+|++|+.++..|..+.-+.+|+++++++ +.....++.+.. + .++++++.++|+||.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~----i------~~l~~~l~~aDiVv~ 221 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGK----I------LSLEEALPEADIVVW 221 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhcccc----H------HhHHHHHccCCEEEE
Confidence 4556799999999999999999997643256999999865 222222222111 1 246788999999999
Q ss_pred ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 165 (279)
Q Consensus 116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t 165 (279)
+++.+...-.+..++ .+..+++=++-|=|+-.
T Consensus 222 ~ts~~~~~~I~~~~l------------------~~~~~viDiAvPRDVd~ 253 (340)
T PRK14982 222 VASMPKGVEIDPETL------------------KKPCLMIDGGYPKNLDT 253 (340)
T ss_pred CCcCCcCCcCCHHHh------------------CCCeEEEEecCCCCCCc
Confidence 998763211111111 25577777788877753
No 171
>PRK06482 short chain dehydrogenase; Provisional
Probab=97.52 E-value=0.0022 Score=57.46 Aligned_cols=112 Identities=13% Similarity=0.030 Sum_probs=64.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------hCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTGM 110 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l~~A 110 (279)
++|.|+||+|++|+.++..|+..|. +|.++++++. ...++.... ...+..+. .-+|. .+. +.+.
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~--~v~~~~r~~~--~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 77 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD--RVAATVRRPD--ALDDLKARY-GDRLWVLQLDVTDSAAVRAVVDRAFAALGRI 77 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCHH--HHHHHHHhc-cCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999987 8999987641 111111110 11122111 11121 122 2457
Q ss_pred CEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEec
Q 023671 111 DLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLIS 158 (279)
Q Consensus 111 DiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~T 158 (279)
|+||+++|...... .+. ...+..|+.....+++.+.++ ...+.++++|
T Consensus 78 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~s 134 (276)
T PRK06482 78 DVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVS 134 (276)
T ss_pred CEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEc
Confidence 99999998653221 111 234566777666666665322 2234555554
No 172
>PLN02996 fatty acyl-CoA reductase
Probab=97.51 E-value=0.0015 Score=64.37 Aligned_cols=121 Identities=16% Similarity=0.099 Sum_probs=74.3
Q ss_pred CCCCCcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCc----hhH-Hhhhhccc----------------CCCeE
Q 023671 37 GGAAGFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNT----PGV-TADISHMD----------------TGAVV 94 (279)
Q Consensus 37 ~~~~~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~----~g~-~~DL~~~~----------------~~~~v 94 (279)
+|-+.+.|.|+||+||+|++++..|+.. +-+.+|+++.+... ... ..++.+.. ...++
T Consensus 7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv 86 (491)
T PLN02996 7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKV 86 (491)
T ss_pred HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCE
Confidence 3455678999999999999999887764 44568888877541 100 01111100 01234
Q ss_pred EEEeCC----------CC-HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEec
Q 023671 95 RGFLGQ----------PQ-LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 158 (279)
Q Consensus 95 ~~~~~~----------~d-~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~T 158 (279)
+.+.+. .+ +.+.++++|+||++|+... ...+..+....|+.....+++...+.. .+.++.+.|
T Consensus 87 ~~i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~-~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST 161 (491)
T PLN02996 87 TPVPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTN-FDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVST 161 (491)
T ss_pred EEEecccCCcCCCCChHHHHHHHHhCCCEEEECccccC-CcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEee
Confidence 433221 01 2345689999999998653 223345667889999999999887642 344444443
No 173
>PRK07326 short chain dehydrogenase; Provisional
Probab=97.50 E-value=0.0013 Score=57.23 Aligned_cols=115 Identities=18% Similarity=0.184 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh-------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal------- 107 (279)
.++|.|+||+|.+|..++..|+..|. +|+++++++. .....++... ..+..+.. .++ +.+.+
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY--KVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999998887 8999998762 1222233321 11222111 112 22222
Q ss_pred CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCceEEEecCC
Q 023671 108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISNP 160 (279)
Q Consensus 108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TNP 160 (279)
.+.|+||+++|..... ..+. .+.+..|+.....+.+.+.+. ...+.++++|..
T Consensus 81 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (237)
T PRK07326 81 GGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSL 141 (237)
T ss_pred CCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECCh
Confidence 3799999998764321 1122 233555655444444443322 234556666643
No 174
>PRK12828 short chain dehydrogenase; Provisional
Probab=97.49 E-value=0.0011 Score=57.34 Aligned_cols=36 Identities=28% Similarity=0.323 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.++|.|+||+|.+|..++..|+++|. +|+++|+++
T Consensus 6 ~~k~vlItGatg~iG~~la~~l~~~G~--~v~~~~r~~ 41 (239)
T PRK12828 6 QGKVVAITGGFGGLGRATAAWLAARGA--RVALIGRGA 41 (239)
T ss_pred CCCEEEEECCCCcHhHHHHHHHHHCCC--eEEEEeCCh
Confidence 346899999999999999999999998 899999876
No 175
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.48 E-value=0.00092 Score=64.95 Aligned_cols=67 Identities=22% Similarity=0.311 Sum_probs=47.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|||+||||+|.+|..++..|...|+ +|.++|+++... .++.... .+.. +++..+++.+||+||++..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~--~V~v~~r~~~~~--~~~a~~~---gv~~---~~~~~e~~~~aDvVIlavp 67 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF--EVIVTGRDPKKG--KEVAKEL---GVEY---ANDNIDAAKDADIVIISVP 67 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC--EEEEEECChHHH--HHHHHHc---CCee---ccCHHHHhccCCEEEEecC
Confidence 5899998669999999999999887 899999875221 1111111 1111 2356678999999999863
No 176
>PRK05717 oxidoreductase; Validated
Probab=97.48 E-value=0.00096 Score=59.10 Aligned_cols=112 Identities=15% Similarity=0.185 Sum_probs=65.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH--HhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV--TADISHMDTGAVVRGFL-GQPQ---LENA-------L 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~--~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l 107 (279)
.++|.|+||+|++|++++..|+..|. +|+++|+++.... ..++. ..+..+. ...+ ..++ +
T Consensus 10 ~k~vlItG~sg~IG~~~a~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (255)
T PRK05717 10 GRVALVTGAARGIGLGIAAWLIAEGW--QVVLADLDRERGSKVAKALG-----ENAWFIAMDVADEAQVAAGVAEVLGQF 82 (255)
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHcC-----CceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999987 9999998652111 11111 1111111 1112 1111 2
Q ss_pred CCCCEEEEccCCCCCCC-----Cch---hhHHHhhHHHHHHHHHHHHHh--CCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRKPG-----MTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g-----~~r---~d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TN 159 (279)
...|++|+++|...... .+. ...+..|+.....+.+.+.++ ...+.+|++|.
T Consensus 83 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS 144 (255)
T PRK05717 83 GRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLAS 144 (255)
T ss_pred CCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcc
Confidence 35799999998753211 111 235667776666666666542 23355666654
No 177
>PRK07069 short chain dehydrogenase; Validated
Probab=97.48 E-value=0.0057 Score=53.60 Aligned_cols=114 Identities=22% Similarity=0.269 Sum_probs=66.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC-C--chhHHhhhhcccCCCeEEEE-eCCCC---HH-------hhhC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV-N--TPGVTADISHMDTGAVVRGF-LGQPQ---LE-------NALT 108 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~-~--~~g~~~DL~~~~~~~~v~~~-~~~~d---~~-------eal~ 108 (279)
||.|+||+|.+|.+++..|+.+|. +|++.|++ . ......++........+..+ ..-.| +. +.+.
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 78 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA--KVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMG 78 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 478999999999999999999997 99999987 3 22222233221100111111 01112 11 1234
Q ss_pred CCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 109 GMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 109 ~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
..|+||+++|..... ..+. ...+..|+. ..+.+.+.+.+... +.++++|.
T Consensus 79 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~ii~~ss 138 (251)
T PRK07069 79 GLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQP-ASIVNISS 138 (251)
T ss_pred CccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCC-cEEEEecC
Confidence 689999999865321 1111 234556665 77788888876544 45555553
No 178
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.46 E-value=0.0017 Score=57.56 Aligned_cols=70 Identities=10% Similarity=0.181 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+.+||+|||+ |.+|..++..+...+. ..++++++.+.. ....++.+.. .+.. ++++.+.++++|+||++.
T Consensus 3 ~~~kI~iIG~-G~mg~ala~~l~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~---~~~~---~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 3 KKHRILFIGA-GRMAEAIFSGLLKTSKEYIEEIIVSNRSNV-EKLDQLQARY---NVST---TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhCCCCCcCeEEEECCCCH-HHHHHHHHHc---CcEE---eCChHHHHhcCCEEEEec
Confidence 3579999998 9999999998887752 345777876421 1122222211 1222 235667889999999985
No 179
>PRK06182 short chain dehydrogenase; Validated
Probab=97.46 E-value=0.0014 Score=58.73 Aligned_cols=113 Identities=13% Similarity=0.130 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhh-------CCCCE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL-------TGMDL 112 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal-------~~ADi 112 (279)
.++|.|+||+|.+|..++..|...|. +|++.++++.. ..++..... ..+.. .....++.+.+ .+.|+
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~~~--l~~~~~~~~-~~~~~Dv~~~~~~~~~~~~~~~~~~~id~ 77 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGY--TVYGAARRVDK--MEDLASLGV-HPLSLDVTDEASIKAAVDTIIAEEGRIDV 77 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHhCCC-eEEEeeCCCHHHHHHHHHHHHHhcCCCCE
Confidence 45899999999999999999999998 99999887521 111211110 11111 11111222223 37899
Q ss_pred EEEccCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 113 VIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 113 VIitag~~~k~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+|+++|..... ..+ ....+..|.. .++.+.+.+++... +.++++|.
T Consensus 78 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~-g~iv~isS 133 (273)
T PRK06182 78 LVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRS-GRIINISS 133 (273)
T ss_pred EEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCC-CEEEEEcc
Confidence 99999864221 111 2234455553 36666677766543 44555543
No 180
>PRK08278 short chain dehydrogenase; Provisional
Probab=97.46 E-value=0.0053 Score=55.23 Aligned_cols=159 Identities=15% Similarity=0.173 Sum_probs=83.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch---------hHHhhhhcccCCCeEEEEe-CCCC---HHhh
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP---------GVTADISHMDTGAVVRGFL-GQPQ---LENA 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~---------g~~~DL~~~~~~~~v~~~~-~~~d---~~ea 106 (279)
+.+++.|+||+|.+|..++..|+..|. +|+++|++... ..+.++.... .++..+. .-++ +.+.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA--NIVIAAKTAEPHPKLPGTIHTAAEEIEAAG--GQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecccccccchhhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHH
Confidence 345899999999999999999999997 99999986511 1112222211 1122111 1112 2222
Q ss_pred h-------CCCCEEEEccCCCCCC---CCchh---hHHHhhHHHHHHHHHHHHHh---CCCceEEEecCCCCchHHHHHH
Q 023671 107 L-------TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC---CPNATVNLISNPVNSTVPIAAE 170 (279)
Q Consensus 107 l-------~~ADiVIitag~~~k~---g~~r~---d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNPvd~~t~~~~~ 170 (279)
+ ...|++|+++|..... ..+.. ..+..|+.-...+++.+... ...+.++++|.+.....
T Consensus 81 ~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~----- 155 (273)
T PRK08278 81 VAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDP----- 155 (273)
T ss_pred HHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccc-----
Confidence 2 3689999999864211 12222 23445655444444444322 23456666664432110
Q ss_pred HHHHhCCCCCCCeeeecchhHHHHHHHHHHHcCCCCCCCcceee
Q 023671 171 VFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVV 214 (279)
Q Consensus 171 ~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~v~~~~V~~~Vi 214 (279)
..++....++.+..--.++-..+++.++ +..|++-.+
T Consensus 156 -----~~~~~~~~Y~~sK~a~~~~~~~la~el~--~~~I~v~~i 192 (273)
T PRK08278 156 -----KWFAPHTAYTMAKYGMSLCTLGLAEEFR--DDGIAVNAL 192 (273)
T ss_pred -----cccCCcchhHHHHHHHHHHHHHHHHHhh--hcCcEEEEE
Confidence 0123344556543323345566666664 344554444
No 181
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=97.46 E-value=0.0031 Score=55.76 Aligned_cols=117 Identities=15% Similarity=0.205 Sum_probs=66.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------- 106 (279)
+.++|.|+||+|.+|..++..|+.+|. +|++.|+++. .....++... ..++..+. .-+| +.+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGA--EVILNGRDPAKLAAAAESLKGQ--GLSAHALAFDVTDHDAVRAAIDAFEAE 84 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CceEEEEEccCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999998 9999998762 2222223221 11222211 1112 1222
Q ss_pred hCCCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCC
Q 023671 107 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 160 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNP 160 (279)
+...|++|+++|..... ..+ -.+.+..|+.....+.+.+.++ ...+.++++|..
T Consensus 85 ~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~ 147 (255)
T PRK07523 85 IGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASV 147 (255)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccc
Confidence 23579999999864211 111 1234556766555555555443 233556666543
No 182
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.45 E-value=0.003 Score=57.35 Aligned_cols=118 Identities=18% Similarity=0.209 Sum_probs=76.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe----CCCCHHh------
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLEN------ 105 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~----~~~d~~e------ 105 (279)
+.+++.+.|+|||+-+|..+|..|+.+|+ +|+|+.+++ +...+.++.+.. ...+..+. .+++.+.
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~--~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~ 79 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGY--NLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELK 79 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHH
Confidence 45667899999999999999999999999 999999987 556666777643 22232221 1112211
Q ss_pred -hhCCCCEEEEccCCCCCCC------CchhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 106 -ALTGMDLVIIPAGVPRKPG------MTRDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 106 -al~~ADiVIitag~~~k~g------~~r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
.....|+.|..||...-.. .+-.+++.-|+. +.+.+.+.+.+.. .+.||+++.
T Consensus 80 ~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~-~G~IiNI~S 143 (265)
T COG0300 80 ERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERG-AGHIINIGS 143 (265)
T ss_pred hcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 1126999999999753221 123456777754 4555566666543 456677653
No 183
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=97.45 E-value=0.00091 Score=61.16 Aligned_cols=66 Identities=18% Similarity=0.251 Sum_probs=47.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
++||+|||. |.+|..++..+...|+ +|.++|+++... ..+.... +.. .+++.+.+++||+||++..
T Consensus 2 ~~~IgviG~-G~mG~~~a~~l~~~g~--~v~~~d~~~~~~--~~~~~~g----~~~---~~~~~e~~~~~d~vi~~vp 67 (296)
T PRK11559 2 TMKVGFIGL-GIMGKPMSKNLLKAGY--SLVVYDRNPEAV--AEVIAAG----AET---ASTAKAVAEQCDVIITMLP 67 (296)
T ss_pred CceEEEEcc-CHHHHHHHHHHHHCCC--eEEEEcCCHHHH--HHHHHCC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 468999998 9999999999999887 999999875221 1122111 111 2356778899999999863
No 184
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=97.44 E-value=0.0021 Score=56.84 Aligned_cols=112 Identities=19% Similarity=0.253 Sum_probs=65.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe----CCCCHHhh-------h
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL----GQPQLENA-------L 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~----~~~d~~ea-------l 107 (279)
.+++.|+||+|.+|..++..|+.+|. +|+++|.+.. .....++.. .+..+. ...+..++ +
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAEGA--RVVIADIKPARARLAALEIGP-----AAIAVSLDVTRQDSIDRIVAAAVERF 78 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEcCCHHHHHHHHHHhCC-----ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 35799999999999999999999998 9999998762 122222211 111111 01112222 2
Q ss_pred CCCCEEEEccCCCCC-C--CCc---hhhHHHhhHHHHHHHHHHHHH----hCCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRK-P--GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k-~--g~~---r~d~~~~N~~i~~~i~~~I~~----~~p~a~viv~TN 159 (279)
...|++|+++|.... + ..+ -...+..|+.-...+.+.+.+ ..+.+.++++|.
T Consensus 79 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 140 (257)
T PRK07067 79 GGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMAS 140 (257)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence 468999999986421 1 111 223456666655555555543 233456666654
No 185
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=97.44 E-value=0.00018 Score=65.82 Aligned_cols=97 Identities=23% Similarity=0.260 Sum_probs=59.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~ 121 (279)
|||.|+|++|++|+.+...|..+++ +++.++..+ .|+.+... + .++-+. .+.|+||+||+...
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~--~v~~~~r~~-----~dl~d~~~---~------~~~~~~-~~pd~Vin~aa~~~ 63 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGY--EVIATSRSD-----LDLTDPEA---V------AKLLEA-FKPDVVINCAAYTN 63 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSE--EEEEESTTC-----S-TTSHHH---H------HHHHHH-H--SEEEE------
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCC--EEEEeCchh-----cCCCCHHH---H------HHHHHH-hCCCeEeccceeec
Confidence 7999999999999999999988887 888886642 33333211 0 011121 25899999997642
Q ss_pred CC--CCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671 122 KP--GMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157 (279)
Q Consensus 122 k~--g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~ 157 (279)
.. ..........|+.....+++...+.+ +.+|.+
T Consensus 64 ~~~ce~~p~~a~~iN~~~~~~la~~~~~~~--~~li~~ 99 (286)
T PF04321_consen 64 VDACEKNPEEAYAINVDATKNLAEACKERG--ARLIHI 99 (286)
T ss_dssp HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT---EEEEE
T ss_pred HHhhhhChhhhHHHhhHHHHHHHHHHHHcC--CcEEEe
Confidence 11 12344567789999999999998754 444444
No 186
>PRK06180 short chain dehydrogenase; Provisional
Probab=97.43 E-value=0.0045 Score=55.70 Aligned_cols=114 Identities=13% Similarity=0.092 Sum_probs=64.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------CC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG 109 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------~~ 109 (279)
+++|.|+||+|.+|++++..|+..|. +|++++++.... .++.... ..++..+. .-+| +.+.+ ..
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~--~V~~~~r~~~~~--~~l~~~~-~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~ 78 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH--RVVGTVRSEAAR--ADFEALH-PDRALARLLDVTDFDAIDAVVADAEATFGP 78 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC--EEEEEeCCHHHH--HHHHhhc-CCCeeEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 45899999999999999999999997 899999875211 1122111 11111111 1112 11222 35
Q ss_pred CCEEEEccCCCCC-C--CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671 110 MDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (279)
Q Consensus 110 ADiVIitag~~~k-~--g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN 159 (279)
.|+||+++|.... + ..+. .+.+..|+.-...+.+.+.+. ...+.++++|.
T Consensus 79 ~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS 137 (277)
T PRK06180 79 IDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITS 137 (277)
T ss_pred CCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEec
Confidence 8999999986421 1 1122 233667776555555554332 22345555553
No 187
>PRK05876 short chain dehydrogenase; Provisional
Probab=97.42 E-value=0.0036 Score=56.54 Aligned_cols=115 Identities=18% Similarity=0.183 Sum_probs=65.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l 107 (279)
.+.+.|+||+|.+|..++..|+.+|. +|++.|+++ ......++.... .++..+. .-+| +.+. +
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~G~--~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 81 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARRGA--RVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLL 81 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 45799999999999999999999998 899999876 222223333211 1222211 1112 1122 2
Q ss_pred CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
...|++|++||..... ..+. ...+..|+. +.+.+.+.+.+....+.++++|.
T Consensus 82 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS 143 (275)
T PRK05876 82 GHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTAS 143 (275)
T ss_pred CCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 3579999999864211 1222 223455654 44445555545443456666654
No 188
>PRK06172 short chain dehydrogenase; Provisional
Probab=97.42 E-value=0.0038 Score=55.02 Aligned_cols=115 Identities=13% Similarity=0.088 Sum_probs=64.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-----
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT----- 108 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~----- 108 (279)
+.++|.|+||+|.+|..++..|+..|. +|+++++++ ......++.... .++..+. ..++ +.+.++
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~ 81 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA--KVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAA 81 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999987 899999876 222223333221 1222211 1112 222222
Q ss_pred --CCCEEEEccCCCCCC----CCchh---hHHHhhHHHHH----HHHHHHHHhCCCceEEEecC
Q 023671 109 --GMDLVIIPAGVPRKP----GMTRD---DLFNINAGIVR----TLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 109 --~ADiVIitag~~~k~----g~~r~---d~~~~N~~i~~----~i~~~I~~~~p~a~viv~TN 159 (279)
..|+||+++|..... ..+.. +.+..|+.-.. ...+.+.+. ..+.++++|.
T Consensus 82 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~ii~~sS 144 (253)
T PRK06172 82 YGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQ-GGGAIVNTAS 144 (253)
T ss_pred hCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEECc
Confidence 459999999864221 12222 23455655443 334444433 2345555554
No 189
>PRK07814 short chain dehydrogenase; Provisional
Probab=97.40 E-value=0.0032 Score=56.12 Aligned_cols=116 Identities=15% Similarity=0.147 Sum_probs=66.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA------- 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea------- 106 (279)
+.+++.|+||+|++|.+++..|+.+|. +|+++|++. ......++.... ..+..+. .-++. .++
T Consensus 9 ~~~~vlItGasggIG~~~a~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 84 (263)
T PRK07814 9 DDQVAVVTGAGRGLGAAIALAFAEAGA--DVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEA 84 (263)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999997 999999875 222223332211 1222211 11222 111
Q ss_pred hCCCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHH----HHhCCCceEEEecC
Q 023671 107 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISN 159 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I----~~~~p~a~viv~TN 159 (279)
+...|+||++||..... ..+ -.+.+..|+.....+.+.. .+..+.+.++++|.
T Consensus 85 ~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS 147 (263)
T PRK07814 85 FGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISS 147 (263)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEcc
Confidence 23689999999864221 111 1234455655444444444 34345566666654
No 190
>PRK06924 short chain dehydrogenase; Provisional
Probab=97.40 E-value=0.0028 Score=55.73 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=31.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
++|.|+||+|.+|+.++..|+++|. +|+++++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~--~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT--HVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC--EEEEEeCCc
Confidence 4799999999999999999999997 899999865
No 191
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=97.39 E-value=0.0047 Score=54.84 Aligned_cols=113 Identities=16% Similarity=0.162 Sum_probs=64.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT 108 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~ 108 (279)
|++.|+||+|.+|..++..|+.+|. +|++.|+++ ......++.+.. .+..+. ..+| .++. +.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g 75 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGA--RVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLG 75 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999998 899999876 222223333211 111111 1112 1111 34
Q ss_pred CCCEEEEccCCCC-CC----CCchhhH---HHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671 109 GMDLVIIPAGVPR-KP----GMTRDDL---FNINA----GIVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 109 ~ADiVIitag~~~-k~----g~~r~d~---~~~N~----~i~~~i~~~I~~~~p~a~viv~TN 159 (279)
..|++|+++|... .+ ..+..++ +..|+ -+.+.+++.+.+....+.|+++|.
T Consensus 76 ~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS 138 (259)
T PRK08340 76 GIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSS 138 (259)
T ss_pred CCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 6899999998642 11 1122222 22232 234455565543334566666654
No 192
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=97.39 E-value=0.0044 Score=54.37 Aligned_cols=116 Identities=16% Similarity=0.223 Sum_probs=65.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HH-------hhhC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NALT 108 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~-------eal~ 108 (279)
+.++|.|+||+|.+|.+++..|+..|. +|+++++++.......+.... .++..+. ..++ +. +...
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA--DIVGAGRSEPSETQQQVEALG--RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCchHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 456899999999999999999999998 999999765322222222211 1122111 1112 11 1224
Q ss_pred CCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHH----HHHhCCCceEEEecC
Q 023671 109 GMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEG----IAKCCPNATVNLISN 159 (279)
Q Consensus 109 ~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~----I~~~~p~a~viv~TN 159 (279)
..|++|+++|...... .+ -.+.+..|+.....+.+. +.+....+.+++++.
T Consensus 80 ~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS 140 (248)
T TIGR01832 80 HIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIAS 140 (248)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 6899999998643211 11 123455665544444444 433333456666553
No 193
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.37 E-value=0.0015 Score=56.08 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=62.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-hh--hhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-AD--ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~-~D--L~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|||+||||+|.+|+.++...+.+|+ ||..+=++..+-.+ .+ +.+.+ + + ..+.+.+++.|-|+||-+-|
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGH--eVTAivRn~~K~~~~~~~~i~q~D----i--f-d~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGH--EVTAIVRNASKLAARQGVTILQKD----I--F-DLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCC--eeEEEEeChHhccccccceeeccc----c--c-ChhhhHhhhcCCceEEEecc
Confidence 6999999999999999999999999 99999887622111 10 11111 0 1 11234578999999999876
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.+. ++. + ..-.+..+.+...++... ...++++.
T Consensus 72 ~~~-~~~---~--~~~~k~~~~li~~l~~ag-v~RllVVG 104 (211)
T COG2910 72 AGA-SDN---D--ELHSKSIEALIEALKGAG-VPRLLVVG 104 (211)
T ss_pred CCC-CCh---h--HHHHHHHHHHHHHHhhcC-CeeEEEEc
Confidence 542 121 1 112233555666666533 34555553
No 194
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.37 E-value=0.0015 Score=59.40 Aligned_cols=98 Identities=14% Similarity=0.141 Sum_probs=60.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.|||++||+ |.+|.+++..|+..+. ..+|.++|++.. ....++.... .++. +.+..+.+++||+||++..
T Consensus 3 ~mkI~~IG~-G~mG~aia~~l~~~g~~~~~~v~v~~r~~~-~~~~~l~~~~---g~~~---~~~~~e~~~~aDvVilav~ 74 (279)
T PRK07679 3 IQNISFLGA-GSIAEAIIGGLLHANVVKGEQITVSNRSNE-TRLQELHQKY---GVKG---THNKKELLTDANILFLAMK 74 (279)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcceEEEECCCCH-HHHHHHHHhc---CceE---eCCHHHHHhcCCEEEEEeC
Confidence 469999998 9999999999988872 248899987541 1122232211 1222 1245677899999999862
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCC
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVN 162 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd 162 (279)
+. .+.++++.+... .++.++|.+.+-+.
T Consensus 75 ----p~------------~~~~vl~~l~~~~~~~~liIs~~aGi~ 103 (279)
T PRK07679 75 ----PK------------DVAEALIPFKEYIHNNQLIISLLAGVS 103 (279)
T ss_pred ----HH------------HHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 11 122333445443 35666766555554
No 195
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=97.37 E-value=0.00093 Score=61.07 Aligned_cols=64 Identities=16% Similarity=0.261 Sum_probs=46.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
||+|||. |.+|+.++..|+..|+ +|.++|+++. ....+..... .. .++..+++++||+||++..
T Consensus 1 ~IgvIG~-G~mG~~iA~~l~~~G~--~V~~~dr~~~--~~~~~~~~g~----~~---~~~~~~~~~~aDivi~~vp 64 (291)
T TIGR01505 1 KVGFIGL-GIMGSPMSINLAKAGY--QLHVTTIGPE--VADELLAAGA----VT---AETARQVTEQADVIFTMVP 64 (291)
T ss_pred CEEEEEe-cHHHHHHHHHHHHCCC--eEEEEcCCHH--HHHHHHHCCC----cc---cCCHHHHHhcCCEEEEecC
Confidence 5999998 9999999999999998 9999998752 1122222211 11 2345688999999999863
No 196
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.37 E-value=0.0009 Score=54.88 Aligned_cols=84 Identities=24% Similarity=0.260 Sum_probs=53.5
Q ss_pred hhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhh
Q 023671 29 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENA 106 (279)
Q Consensus 29 ~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~ea 106 (279)
+.++..+.-..+.++|+|+|+ |.+|..++..|...+ ..+|.++|++.. ...+.++... ..... ..+..+.
T Consensus 7 ~~a~~~~~~~~~~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~~--~~~~~----~~~~~~~ 78 (155)
T cd01065 7 VRALEEAGIELKGKKVLILGA-GGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGEL--GIAIA----YLDLEEL 78 (155)
T ss_pred HHHHHhhCCCCCCCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhhc--cccee----ecchhhc
Confidence 344443321245679999998 999999999998876 458999998762 2222222211 00111 1244566
Q ss_pred hCCCCEEEEccCCC
Q 023671 107 LTGMDLVIIPAGVP 120 (279)
Q Consensus 107 l~~ADiVIitag~~ 120 (279)
++++|+||.+....
T Consensus 79 ~~~~Dvvi~~~~~~ 92 (155)
T cd01065 79 LAEADLIINTTPVG 92 (155)
T ss_pred cccCCEEEeCcCCC
Confidence 89999999997654
No 197
>PRK06545 prephenate dehydrogenase; Validated
Probab=97.36 E-value=0.0016 Score=61.59 Aligned_cols=68 Identities=21% Similarity=0.217 Sum_probs=46.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+||+|||. |.+|.+++..|...|+ ++.++|.+........-..... .. . .++++.+++++||+||++.
T Consensus 1 ~~I~iIG~-GliG~siA~~L~~~G~--~v~i~~~~~~~~~~~~a~~~~~-~~-~---~~~~~~~~~~~aDlVilav 68 (359)
T PRK06545 1 RTVLIVGL-GLIGGSLALAIKAAGP--DVFIIGYDPSAAQLARALGFGV-ID-E---LAADLQRAAAEADLIVLAV 68 (359)
T ss_pred CeEEEEEe-CHHHHHHHHHHHhcCC--CeEEEEeCCCHHHHHHHhcCCC-Cc-c---cccCHHHHhcCCCEEEEeC
Confidence 37999998 9999999999999998 7888888762211111001100 00 0 1235677889999999986
No 198
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.36 E-value=0.0015 Score=60.76 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhCCCCcEEEEEeCCCc--h--------hH--Hhh----hhccc---------CCCeEEEEeCCCCHHhhh
Q 023671 53 IGQPLAMLMKINPLVSVLHLYDVVNT--P--------GV--TAD----ISHMD---------TGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 53 VG~~la~~L~~~~~~~ev~L~D~~~~--~--------g~--~~D----L~~~~---------~~~~v~~~~~~~d~~eal 107 (279)
+|+.+|..++..|+ +|+|+|+++. . +. ..+ +.... ...+++... ..++++++
T Consensus 1 MG~giA~~~a~~G~--~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~~a~ 77 (314)
T PRK08269 1 MGQGIALAFAFAGH--DVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVA-RDGAADAL 77 (314)
T ss_pred CcHHHHHHHHhCCC--eEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeec-CcchHHHh
Confidence 57889999999999 9999999871 1 11 001 10000 012444321 12356889
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~ 186 (279)
++||+||.++ .+|..+.+.+...+.+.+ |++++ .||...+...-+ ..... .|+|++|+
T Consensus 78 ~~aD~ViEav--------------~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~l----a~~~~-~p~r~~g~ 136 (314)
T PRK08269 78 ADADLVFEAV--------------PEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDL----QRHVA-HPERFLNA 136 (314)
T ss_pred ccCCEEEECC--------------cCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHH----HhhcC-CcccEEEE
Confidence 9999999986 356788889999999987 55555 688777554322 22222 34678886
No 199
>PRK06914 short chain dehydrogenase; Provisional
Probab=97.36 E-value=0.0029 Score=56.77 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=30.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+.|+||+|.+|..++..|+.+|+ +|++++++.
T Consensus 4 k~~lItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 37 (280)
T PRK06914 4 KIAIVTGASSGFGLLTTLELAKKGY--LVIATMRNP 37 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHhCCC--EEEEEeCCH
Confidence 4689999999999999999999997 899998865
No 200
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=97.36 E-value=0.0017 Score=59.07 Aligned_cols=98 Identities=23% Similarity=0.262 Sum_probs=64.3
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC-CCCEEEEccCCCCC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPAGVPRK 122 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~-~ADiVIitag~~~k 122 (279)
|.|+|++|+||+++...|...|+ +|.++-++..+... ..+ ..+.... .+.+... ++|+||..||.|--
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh--~v~iltR~~~~~~~--~~~----~~v~~~~---~~~~~~~~~~DavINLAG~~I~ 69 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH--QVTILTRRPPKASQ--NLH----PNVTLWE---GLADALTLGIDAVINLAGEPIA 69 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC--eEEEEEcCCcchhh--hcC----ccccccc---hhhhcccCCCCEEEECCCCccc
Confidence 57999999999999999999998 99999876521111 111 1111111 1223333 79999999997632
Q ss_pred CC----CchhhHHHhhHHHHHHHHHHHHHhCCCc
Q 023671 123 PG----MTRDDLFNINAGIVRTLCEGIAKCCPNA 152 (279)
Q Consensus 123 ~g----~~r~d~~~~N~~i~~~i~~~I~~~~p~a 152 (279)
.. .....+.+.-+...+.+.+.|.+.....
T Consensus 70 ~rrWt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P 103 (297)
T COG1090 70 ERRWTEKQKEEIRQSRINTTEKLVELIAASETKP 103 (297)
T ss_pred cccCCHHHHHHHHHHHhHHHHHHHHHHHhccCCC
Confidence 21 1234455666888899999999765433
No 201
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=97.36 E-value=0.0021 Score=56.23 Aligned_cols=114 Identities=18% Similarity=0.259 Sum_probs=64.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL------ 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal------ 107 (279)
+.++|.|+||+|++|.+++..|+.+|. +|++++++.. .....++.... ..+..+.. -.| +.+.+
T Consensus 5 ~~~~ilItGasg~iG~~l~~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (251)
T PRK12826 5 EGRVALVTGAARGIGRAIAVRLAADGA--EVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVED 80 (251)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999997 8999998751 22222232221 12322211 112 22222
Q ss_pred -CCCCEEEEccCCCCC-C--CCch---hhHHHhhHHHHHHHHHHH----HHhCCCceEEEec
Q 023671 108 -TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAGIVRTLCEGI----AKCCPNATVNLIS 158 (279)
Q Consensus 108 -~~ADiVIitag~~~k-~--g~~r---~d~~~~N~~i~~~i~~~I----~~~~p~a~viv~T 158 (279)
...|+||+++|.... + ..+. .+.+..|+.-...+.+.+ .+..+ ..++++|
T Consensus 81 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~~ii~~s 141 (251)
T PRK12826 81 FGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGG-GRIVLTS 141 (251)
T ss_pred hCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-cEEEEEe
Confidence 368999999976432 1 1222 234555665554454444 44333 4455544
No 202
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=97.35 E-value=0.0019 Score=59.48 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=59.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~ 121 (279)
|||+|||. |.+|++++..|...++ +|.++|+++.. ...+..... .......++.+.++++|+||++...
T Consensus 1 M~Ig~IGl-G~mG~~la~~L~~~g~--~V~~~dr~~~~--~~~l~~~g~----~~~~s~~~~~~~~~~~dvIi~~vp~-- 69 (298)
T TIGR00872 1 MQLGLIGL-GRMGANIVRRLAKRGH--DCVGYDHDQDA--VKAMKEDRT----TGVANLRELSQRLSAPRVVWVMVPH-- 69 (298)
T ss_pred CEEEEEcc-hHHHHHHHHHHHHCCC--EEEEEECCHHH--HHHHHHcCC----cccCCHHHHHhhcCCCCEEEEEcCc--
Confidence 58999998 9999999999999997 99999987621 122222111 0011011233456789999998521
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCC
Q 023671 122 KPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPV 161 (279)
Q Consensus 122 k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPv 161 (279)
..++++++.+.... |+.+++..||..
T Consensus 70 --------------~~~~~v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 70 --------------GIVDAVLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred --------------hHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 12444445555544 566777776653
No 203
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=97.34 E-value=0.0042 Score=54.59 Aligned_cols=117 Identities=20% Similarity=0.232 Sum_probs=66.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEE--eCC-CC----------H
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--LGQ-PQ----------L 103 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~--~~~-~d----------~ 103 (279)
.+.++|.|+|++|++|.+++..|+..|. +|+++|++. ......++.+.. ...+..+ ..+ .+ +
T Consensus 10 ~~~k~vlItG~~g~iG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~ 86 (247)
T PRK08945 10 LKDRIILVTGAGDGIGREAALTYARHGA--TVILLGRTEEKLEAVYDEIEAAG-GPQPAIIPLDLLTATPQNYQQLADTI 86 (247)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--cEEEEeCCHHHHHHHHHHHHhcC-CCCceEEEecccCCCHHHHHHHHHHH
Confidence 4567899999999999999999999887 999999876 222333443322 1111111 100 01 1
Q ss_pred HhhhCCCCEEEEccCCCCC--C--CCch---hhHHHhhHHHHHHHHH----HHHHhCCCceEEEecC
Q 023671 104 ENALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN 159 (279)
Q Consensus 104 ~eal~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i~~~i~~----~I~~~~p~a~viv~TN 159 (279)
.+.+...|+||++||.... + ..+. ...+..|+.....+.+ .+.+. +.+.|+++|.
T Consensus 87 ~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~-~~~~iv~~ss 152 (247)
T PRK08945 87 EEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKS-PAASLVFTSS 152 (247)
T ss_pred HHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhC-CCCEEEEEcc
Confidence 2223468999999986322 1 1222 2345566654333444 33333 4455665554
No 204
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.34 E-value=0.0025 Score=55.55 Aligned_cols=99 Identities=18% Similarity=0.206 Sum_probs=60.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhH---------------HhhhhcccCCCeEEEEe--
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGV---------------TADISHMDTGAVVRGFL-- 98 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-----~~g~---------------~~DL~~~~~~~~v~~~~-- 98 (279)
..||+|+|+ |.+|+.++..|+..|. .+|+|+|.+. +... ...|.......++..+.
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~~ 98 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGI-GKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDEK 98 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCC-CEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeeee
Confidence 348999999 9999999999999985 5899999983 1000 01111111123333321
Q ss_pred -CCCCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEE
Q 023671 99 -GQPQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNL 156 (279)
Q Consensus 99 -~~~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv 156 (279)
..+++.+.++++|+||.+. +|.+.-..+...+.+..+..+++.
T Consensus 99 i~~~~~~~~~~~~DlVi~a~---------------Dn~~~k~~l~~~~~~~~~~~~ii~ 142 (200)
T TIGR02354 99 ITEENIDKFFKDADIVCEAF---------------DNAEAKAMLVNAVLEKYKDKYLIA 142 (200)
T ss_pred CCHhHHHHHhcCCCEEEECC---------------CCHHHHHHHHHHHHHHcCCCcEEE
Confidence 1123445688999999983 234444555666666555545444
No 205
>PRK12939 short chain dehydrogenase; Provisional
Probab=97.34 E-value=0.0031 Score=55.14 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=66.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA------- 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea------- 106 (279)
+.++|.|+||+|.+|+.++..|+.+|. +|+++++++ ......++.... .++..+. ..+|. .+.
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 81 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA--TVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAA 81 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999998 899998865 222223333221 1222211 11221 111
Q ss_pred hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671 107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN 159 (279)
+.+.|+||+++|..... ..+. ...+..|..-...+.+.+.++ .+.+.++++|.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS 143 (250)
T PRK12939 82 LGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLAS 143 (250)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECc
Confidence 24789999999864321 1111 123445655554454444332 22456666554
No 206
>PRK07774 short chain dehydrogenase; Provisional
Probab=97.33 E-value=0.0049 Score=54.06 Aligned_cols=115 Identities=17% Similarity=0.168 Sum_probs=65.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEE-eCCCCHH---h-------h
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF-LGQPQLE---N-------A 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~-~~~~d~~---e-------a 106 (279)
+.+++.|+||+|++|.+++..|+..|. +|+++|+++. .....++.+.. ..+..+ ..-+|.. + .
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~--~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 80 (250)
T PRK07774 5 DDKVAIVTGAAGGIGQAYAEALAREGA--SVVVADINAEGAERVAKQIVADG--GTAIAVQVDVSDPDSAKAMADATVSA 80 (250)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 346899999999999999999999997 9999998752 12222222211 111111 1112221 1 1
Q ss_pred hCCCCEEEEccCCCCC----C--CCch---hhHHHhhHHHHHHHHHHHHHhC---CCceEEEec
Q 023671 107 LTGMDLVIIPAGVPRK----P--GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLIS 158 (279)
Q Consensus 107 l~~ADiVIitag~~~k----~--g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~a~viv~T 158 (279)
+...|+||+++|.... + ..+. .+.+..|+.....+.+.+.++. +.+.++++|
T Consensus 81 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~s 144 (250)
T PRK07774 81 FGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQS 144 (250)
T ss_pred hCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEe
Confidence 2368999999986421 1 1121 1234566665555555554431 234566555
No 207
>PRK05855 short chain dehydrogenase; Validated
Probab=97.33 E-value=0.0063 Score=59.92 Aligned_cols=117 Identities=17% Similarity=0.191 Sum_probs=68.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhh------
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA------ 106 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea------ 106 (279)
.+.+++.|+||+|.+|..++..|+..|. +|++.|++.. .....++.... ..+..+. .-+|. .+.
T Consensus 313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 388 (582)
T PRK05855 313 FSGKLVVVTGAGSGIGRETALAFAREGA--EVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRA 388 (582)
T ss_pred CCCCEEEEECCcCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHH
Confidence 3456899999999999999999999998 8999998762 22223332211 1222211 11121 111
Q ss_pred -hCCCCEEEEccCCCCCC---CCch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671 107 -LTGMDLVIIPAGVPRKP---GMTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 107 -l~~ADiVIitag~~~k~---g~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+...|++|++||..... ..+. ...+..|+ .+.+.+.+.+.+....+.|+++|.
T Consensus 389 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS 452 (582)
T PRK05855 389 EHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVAS 452 (582)
T ss_pred hcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 23579999999975321 1122 22344564 344555556666555566766654
No 208
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.33 E-value=0.0019 Score=58.85 Aligned_cols=100 Identities=18% Similarity=0.143 Sum_probs=62.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~--~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|+||+|||+ |.+|..++..|...+.. .+|+++|.++.. ....+... ...+.. +.+..+.++++|+||++..
T Consensus 1 m~~I~iIG~-G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~-~~~~l~~~--~~~~~~---~~~~~e~~~~aDvVilavp 73 (277)
T PRK06928 1 MEKIGFIGY-GSMADMIATKLLETEVATPEEIILYSSSKNE-HFNQLYDK--YPTVEL---ADNEAEIFTKCDHSFICVP 73 (277)
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCCCcccEEEEeCCcHH-HHHHHHHH--cCCeEE---eCCHHHHHhhCCEEEEecC
Confidence 468999998 99999999999887732 489999886411 11222211 111222 2345677899999999863
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCc
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNS 163 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~ 163 (279)
+ ..++++++.+..+- ++..++.++|-++.
T Consensus 74 ----p------------~~~~~vl~~l~~~l~~~~~ivS~~aGi~~ 103 (277)
T PRK06928 74 ----P------------LAVLPLLKDCAPVLTPDRHVVSIAAGVSL 103 (277)
T ss_pred ----H------------HHHHHHHHHHHhhcCCCCEEEEECCCCCH
Confidence 1 22445666665543 45566666666544
No 209
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=97.32 E-value=0.0011 Score=60.94 Aligned_cols=64 Identities=20% Similarity=0.313 Sum_probs=47.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+||+|||. |.+|..++..|+..|+ +|.++|+++.. ..++.... ... .++..+++++||+||++.
T Consensus 2 ~~Ig~IGl-G~mG~~mA~~l~~~G~--~V~v~d~~~~~--~~~~~~~g----~~~---~~s~~~~~~~aDvVi~~v 65 (296)
T PRK15461 2 AAIAFIGL-GQMGSPMASNLLKQGH--QLQVFDVNPQA--VDALVDKG----ATP---AASPAQAAAGAEFVITML 65 (296)
T ss_pred CeEEEEee-CHHHHHHHHHHHHCCC--eEEEEcCCHHH--HHHHHHcC----Ccc---cCCHHHHHhcCCEEEEec
Confidence 48999998 9999999999999998 99999987621 12222211 111 235567889999999986
No 210
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.32 E-value=0.0021 Score=58.53 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=46.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+||++||+ |.+|++++..|+..++ ..+|+.+|+++. ....+.+.. . +... ++..+.+++||+||++.
T Consensus 3 ~~IgfIG~-G~MG~aia~~L~~~g~~~~~~I~v~~r~~~--~~~~l~~~~-g--~~~~---~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGC-GNMGIAMIGGMINKNIVSPDQIICSDLNVS--NLKNASDKY-G--ITIT---TNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECc-cHHHHHHHHHHHHCCCCCCceEEEECCCHH--HHHHHHHhc-C--cEEe---CCcHHHHhhCCEEEEEe
Confidence 58999998 9999999999998875 357999998652 122222211 1 2221 24456789999999987
No 211
>PRK06181 short chain dehydrogenase; Provisional
Probab=97.32 E-value=0.0058 Score=54.18 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=65.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh-------C
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL-------T 108 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal-------~ 108 (279)
++|.|+||+|.+|..++..|+.+|. +|+++|+++. +....++.... ..+..+. .-.|. .+++ .
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~--~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 77 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA--QLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFG 77 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999887 9999998752 22222333222 1222211 11221 1122 3
Q ss_pred CCCEEEEccCCCCCCC---C-ch---hhHHHhhHHHHHHHHHHHHHhC--CCceEEEecCC
Q 023671 109 GMDLVIIPAGVPRKPG---M-TR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISNP 160 (279)
Q Consensus 109 ~ADiVIitag~~~k~g---~-~r---~d~~~~N~~i~~~i~~~I~~~~--p~a~viv~TNP 160 (279)
+.|+||+++|...... . +. ...+..|+.....+++.+.++. ..+.++++|..
T Consensus 78 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~ 138 (263)
T PRK06181 78 GIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSL 138 (263)
T ss_pred CCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecc
Confidence 6899999998643211 1 11 2235666665555555554321 23455555543
No 212
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=97.32 E-value=0.0026 Score=55.50 Aligned_cols=114 Identities=21% Similarity=0.344 Sum_probs=63.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHh-------h
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------A 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~e-------a 106 (279)
+.+++.|+||+|.+|..++..|+.+|. .|.+.+.+. ......++. .++..+. ..++ +.+ .
T Consensus 5 ~~~~vlItGa~g~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~ 77 (245)
T PRK12936 5 SGRKALVTGASGGIGEEIARLLHAQGA--IVGLHGTRVEKLEALAAELG-----ERVKIFPANLSDRDEVKALGQKAEAD 77 (245)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHhC-----CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999997 888887764 111111221 1121111 1112 111 1
Q ss_pred hCCCCEEEEccCCCCCC---CC---chhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCC
Q 023671 107 LTGMDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 160 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~---~r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNP 160 (279)
+...|+||+++|..... .. +-...+..|+.....+++.+.+. .+.+.++++|..
T Consensus 78 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~ 140 (245)
T PRK12936 78 LEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSV 140 (245)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCH
Confidence 34689999999864321 11 12234556666544444443321 234556666644
No 213
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=97.31 E-value=0.0035 Score=55.51 Aligned_cols=36 Identities=33% Similarity=0.382 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+++.|+||+|.+|.+++..|+.+|. +|+++|+++
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~--~v~~~~r~~ 42 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA--RVVLVDRSE 42 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCch
Confidence 456899999999999999999999997 899999875
No 214
>PRK08507 prephenate dehydrogenase; Validated
Probab=97.31 E-value=0.0019 Score=58.66 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=44.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
|||+|||. |.+|.+++..|...|+..+|+.+|+++.. ...+..... ... ..+..+ +.++|+||++.
T Consensus 1 m~I~iIG~-G~mG~sla~~l~~~g~~~~v~~~d~~~~~--~~~~~~~g~---~~~---~~~~~~-~~~aD~Vilav 66 (275)
T PRK08507 1 MKIGIIGL-GLMGGSLGLALKEKGLISKVYGYDHNELH--LKKALELGL---VDE---IVSFEE-LKKCDVIFLAI 66 (275)
T ss_pred CEEEEEcc-CHHHHHHHHHHHhcCCCCEEEEEcCCHHH--HHHHHHCCC---Ccc---cCCHHH-HhcCCEEEEeC
Confidence 48999998 99999999999988865589999987521 111111111 001 123444 45699999986
No 215
>PRK07832 short chain dehydrogenase; Provisional
Probab=97.30 E-value=0.016 Score=51.80 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=64.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCH----------HhhhCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQL----------ENALTG 109 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~----------~eal~~ 109 (279)
+++.|+||+|.+|..++..|+..|. +|+++++++ ......++..............-+|. .+.+..
T Consensus 1 k~vlItGas~giG~~la~~la~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGA--ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGS 78 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 3789999999999999999999997 899999875 22222333322111100000011121 112346
Q ss_pred CCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHH----HHHHhCCCceEEEecCCC
Q 023671 110 MDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISNPV 161 (279)
Q Consensus 110 ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~----~I~~~~p~a~viv~TNPv 161 (279)
.|++|+++|..... ..+. ...+..|+.....+++ .+.+....+.|+++|...
T Consensus 79 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~ 140 (272)
T PRK07832 79 MDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAA 140 (272)
T ss_pred CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEcccc
Confidence 89999999864221 1121 2335556554444444 444333345666665443
No 216
>PRK07890 short chain dehydrogenase; Provisional
Probab=97.30 E-value=0.0021 Score=56.72 Aligned_cols=117 Identities=15% Similarity=0.142 Sum_probs=66.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HH-------h
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LE-------N 105 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~-------e 105 (279)
.+.++|.|+||+|.+|.+++..|+.+|. +|+++|+++. .....++.... .++..+. ..+| +. +
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 78 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA--DVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALE 78 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHH
Confidence 4557899999999999999999999998 9999998762 22223332211 1121111 1112 11 1
Q ss_pred hhCCCCEEEEccCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCceEEEecC
Q 023671 106 ALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN 159 (279)
Q Consensus 106 al~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i~~~i~~~I~~~~--p~a~viv~TN 159 (279)
.+...|+||+++|.... + ..+. ...+..|+.-...+.+.+.+.- ..+.++++|.
T Consensus 79 ~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS 141 (258)
T PRK07890 79 RFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINS 141 (258)
T ss_pred HcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 12468999999986422 1 1122 2345566655555555554321 1245665553
No 217
>PRK12937 short chain dehydrogenase; Provisional
Probab=97.30 E-value=0.0048 Score=53.84 Aligned_cols=116 Identities=15% Similarity=0.146 Sum_probs=65.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCC---CHHhhh-----
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQP---QLENAL----- 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~---d~~eal----- 107 (279)
+.++|.|+||+|.+|++++..|+.+|. ++++++.+.. .....++... ..++..+. .-. ++++++
T Consensus 4 ~~~~vlItG~~~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (245)
T PRK12937 4 SNKVAIVTGASRGIGAAIARRLAADGF--AVAVNYAGSAAAADELVAEIEAA--GGRAIAVQADVADAAAVTRLFDAAET 79 (245)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999999998 8888766441 1122223221 11222211 111 222333
Q ss_pred --CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecC
Q 023671 108 --TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 159 (279)
Q Consensus 108 --~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TN 159 (279)
.+.|+||+++|...... .+ -...+..|+.....+++.+.+. .+.+.++++|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 140 (245)
T PRK12937 80 AFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLST 140 (245)
T ss_pred HcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEee
Confidence 36899999998643111 11 1233556665555555554433 24456666653
No 218
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=97.29 E-value=0.0026 Score=58.45 Aligned_cols=117 Identities=17% Similarity=0.119 Sum_probs=75.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH---HhhhhcccCCCeEEEEeC-CCCHHhhhC--CCCEEEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV---TADISHMDTGAVVRGFLG-QPQLENALT--GMDLVII 115 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~---~~DL~~~~~~~~v~~~~~-~~d~~eal~--~ADiVIi 115 (279)
|++.|+|++||+|+++...+..+....+|+.+|.-.-.|. ..++.+.+....+++-.+ ...+.+.++ +.|.|++
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence 5789999999999999988877766568899997652222 234444332223333111 112234455 6899999
Q ss_pred ccCCCC--CCCCchhhHHHhhHHHHHHHHHHHHHhCCC-ceEEEec
Q 023671 116 PAGVPR--KPGMTRDDLFNINAGIVRTLCEGIAKCCPN-ATVNLIS 158 (279)
Q Consensus 116 tag~~~--k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~-a~viv~T 158 (279)
.|+-.- +.=....++++.|+-....+.++.+++... -++-+.|
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HIST 126 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHIST 126 (340)
T ss_pred echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEecc
Confidence 875321 000123578899999999999999998864 3444444
No 219
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=97.29 E-value=0.0015 Score=66.49 Aligned_cols=90 Identities=19% Similarity=0.159 Sum_probs=60.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh--CCCCEEEEcc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL--TGMDLVIIPA 117 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal--~~ADiVIita 117 (279)
+.|||.|+||+|++|++++..|..+++ ++... . .|+.+.. .+...+ .+.|+||++|
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~--~v~~~-~-------~~l~d~~------------~v~~~i~~~~pd~Vih~A 436 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGI--AYEYG-K-------GRLEDRS------------SLLADIRNVKPTHVFNAA 436 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCC--eEEee-c-------cccccHH------------HHHHHHHhhCCCEEEECC
Confidence 468999999999999999999988886 55211 1 1111110 011222 2689999999
Q ss_pred CCCCCC--C---CchhhHHHhhHHHHHHHHHHHHHhCCC
Q 023671 118 GVPRKP--G---MTRDDLFNINAGIVRTLCEGIAKCCPN 151 (279)
Q Consensus 118 g~~~k~--g---~~r~d~~~~N~~i~~~i~~~I~~~~p~ 151 (279)
+....+ + ....+.+..|+.....+++.+++....
T Consensus 437 a~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~ 475 (668)
T PLN02260 437 GVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL 475 (668)
T ss_pred cccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe
Confidence 864321 1 134567788999999999999987643
No 220
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=97.29 E-value=0.0049 Score=54.60 Aligned_cols=115 Identities=15% Similarity=0.153 Sum_probs=67.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCHH---hh-------h
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE---NA-------L 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~~---ea-------l 107 (279)
.++|.|+||+|.+|++++..|+..|. +|+++|.+.. .....++... ..++..+. .-+|.+ +. +
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~i~~~--~~~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEAGA--RVVLSARKAEELEEAAAHLEAL--GIDALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 46899999999999999999999997 8999998652 1111222211 11222111 112211 11 2
Q ss_pred CCCCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHh----CCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKC----CPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~----~p~a~viv~TN 159 (279)
...|+||+++|...... .+ -.+.+..|+.....+.+.+.++ .+.+.++++|.
T Consensus 88 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS 149 (259)
T PRK08213 88 GHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVAS 149 (259)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 36799999998632111 11 1234567777777777766544 23455666554
No 221
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.29 E-value=0.014 Score=51.36 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=30.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
++|.|+||+|++|++++..|+.+|. +|+++|...
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~--~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGF--DLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecCc
Confidence 4688999999999999999999997 999999754
No 222
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.29 E-value=0.0025 Score=55.40 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
++++|.|+||+|.+|+.++..|.++|+ ++.+.....
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~--~v~~~~~~~ 40 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA--DVVVHYRSD 40 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCC
Confidence 356899999999999999999999998 766655543
No 223
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=97.28 E-value=0.004 Score=54.63 Aligned_cols=34 Identities=24% Similarity=0.321 Sum_probs=31.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
++|.|+||+|++|+.++..|+.+|. +|++++++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~--~v~~~~r~~ 35 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA--NVVVNDLGE 35 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999998 999999876
No 224
>PRK07024 short chain dehydrogenase; Provisional
Probab=97.28 E-value=0.0018 Score=57.48 Aligned_cols=35 Identities=37% Similarity=0.350 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+++|.|+||+|.+|..++..|++.|. +|+++|++.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~--~v~~~~r~~ 36 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA--TLGLVARRT 36 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999997 999999875
No 225
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.26 E-value=0.0037 Score=54.49 Aligned_cols=35 Identities=29% Similarity=0.470 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~ 77 (279)
+++|.|+||+|.+|..++..|+..|+ ++++. +++.
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~--~v~~~~~r~~ 40 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA--KVVIAYDINE 40 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence 45899999999999999999998887 88887 8765
No 226
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=97.26 E-value=0.003 Score=59.22 Aligned_cols=63 Identities=21% Similarity=0.377 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
..++|+|||. |.+|+.+|..|...|. +|+.+|++.... .+. ++ . ..++.+++++||+|+++..
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~G~--~V~~~d~~~~~~--~~~--------~~-~--~~~l~ell~~aDiVil~lP 207 (330)
T PRK12480 145 KNMTVAIIGT-GRIGAATAKIYAGFGA--TITAYDAYPNKD--LDF--------LT-Y--KDSVKEAIKDADIISLHVP 207 (330)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEeCChhHh--hhh--------hh-c--cCCHHHHHhcCCEEEEeCC
Confidence 4568999998 9999999999988887 999999865210 100 11 1 2357889999999999863
No 227
>PRK05993 short chain dehydrogenase; Provisional
Probab=97.26 E-value=0.0022 Score=57.71 Aligned_cols=112 Identities=12% Similarity=0.053 Sum_probs=63.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhh--------CCCCE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL--------TGMDL 112 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal--------~~ADi 112 (279)
++|.|+||+|.+|..++..|+..|. +|++.++++... .++..... ..+.. .....++++++ ...|+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~--~Vi~~~r~~~~~--~~l~~~~~-~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~ 79 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW--RVFATCRKEEDV--AALEAEGL-EAFQLDYAEPESIAALVAQVLELSGGRLDA 79 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHCCc-eEEEccCCCHHHHHHHHHHHHHHcCCCccE
Confidence 4799999999999999999999997 999999875211 11221110 00110 00001111122 25699
Q ss_pred EEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671 113 VIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 113 VIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN 159 (279)
+|++||..... ..+ -...+..|+.. .+.+.+.+++... +.|+++|.
T Consensus 80 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~-g~iv~isS 135 (277)
T PRK05993 80 LFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQ-GRIVQCSS 135 (277)
T ss_pred EEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCC-CEEEEECC
Confidence 99999864321 111 12345566554 6667777765543 45555553
No 228
>PRK07454 short chain dehydrogenase; Provisional
Probab=97.25 E-value=0.0029 Score=55.37 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=64.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL------ 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------ 107 (279)
+++++.|+|++|.+|..++..|+.+|. +|+++|+++. .....++.... ..+..+. ..++. ..++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGW--DLALVARSQDALEALAAELRSTG--VKAAAYSIDLSNPEAIAPGIAELLEQ 80 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhCC--CcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999998 8999998752 12222222211 1222111 11222 1222
Q ss_pred -CCCCEEEEccCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 108 -TGMDLVIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 108 -~~ADiVIitag~~~k~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
.+.|++|.++|..... ..+ -...+..|+. +.+.+.+.+.+.. .+.++++|.
T Consensus 81 ~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~isS 142 (241)
T PRK07454 81 FGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARG-GGLIINVSS 142 (241)
T ss_pred cCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcC-CcEEEEEcc
Confidence 3589999999864321 111 1223445554 4444555555432 345555554
No 229
>PRK09291 short chain dehydrogenase; Provisional
Probab=97.25 E-value=0.005 Score=54.21 Aligned_cols=113 Identities=16% Similarity=0.207 Sum_probs=62.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEe-CCCC---HHhhhC-CCCEEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQ---LENALT-GMDLVI 114 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~-~ADiVI 114 (279)
++|.|+||+|.+|..++..|++.|. +|++.+++... ....+.... ...+.... .-+| +.+++. +.|+||
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~id~vi 78 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH--NVIAGVQIAPQVTALRAEAARR--GLALRVEKLDLTDAIDRAQAAEWDVDVLL 78 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhc--CCcceEEEeeCCCHHHHHHHhcCCCCEEE
Confidence 4799999999999999999999997 88888876521 111111111 11122111 1112 233344 899999
Q ss_pred EccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 115 IPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 115 itag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+++|..... ..+.. ..+..|+. +.+.+.+.+.+... +.|+++|.
T Consensus 79 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~~iv~~SS 132 (257)
T PRK09291 79 NNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGK-GKVVFTSS 132 (257)
T ss_pred ECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-ceEEEEcC
Confidence 999865321 11111 22344544 34444455544443 45666553
No 230
>PRK08263 short chain dehydrogenase; Provisional
Probab=97.25 E-value=0.0016 Score=58.49 Aligned_cols=111 Identities=14% Similarity=0.012 Sum_probs=62.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHh-------hhCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------ALTGM 110 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~e-------al~~A 110 (279)
++|.|+||+|.+|++++..|+.+|. +|++.+++.... .++.+.. ...+..+. ..+| +.+ .+...
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~--~V~~~~r~~~~~--~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 78 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGD--RVVATARDTATL--ADLAEKY-GDRLLPLALDVTDRAAVFAAVETAVEHFGRL 78 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEECCHHHH--HHHHHhc-cCCeeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4799999999999999999999997 899999875211 1111110 00111110 0112 111 12467
Q ss_pred CEEEEccCCCCCCC---Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671 111 DLVIIPAGVPRKPG---MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 111 DiVIitag~~~k~g---~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T 158 (279)
|.||+++|...... .+ -.+.+..|+.. .+.+.+.+++.... .++++|
T Consensus 79 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vs 135 (275)
T PRK08263 79 DIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQIS 135 (275)
T ss_pred CEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEc
Confidence 99999998753211 11 12345566554 45555556654444 444444
No 231
>PRK06197 short chain dehydrogenase; Provisional
Probab=97.25 E-value=0.0051 Score=56.19 Aligned_cols=116 Identities=23% Similarity=0.164 Sum_probs=66.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRGFL-GQPQL---ENA------- 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~~~-~~~d~---~ea------- 106 (279)
+.++|.|+||+|.+|..++..|+..|. +|++++++... ....++........+..+. .-.|. .+.
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~--~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGA--HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 346899999999999999999999997 89999987521 1122332111111222211 11121 111
Q ss_pred hCCCCEEEEccCCCCCCC-Cc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671 107 LTGMDLVIIPAGVPRKPG-MT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 107 l~~ADiVIitag~~~k~g-~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T 158 (279)
+...|++|++||....+. .+ -...+..|+.. .+.+.+.+++.. .+.|+++|
T Consensus 93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS 151 (306)
T PRK06197 93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVP-GSRVVTVS 151 (306)
T ss_pred CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCC-CCEEEEEC
Confidence 235899999998642211 11 12234555544 666777766543 34555554
No 232
>PRK12367 short chain dehydrogenase; Provisional
Probab=97.25 E-value=0.006 Score=54.44 Aligned_cols=102 Identities=14% Similarity=0.212 Sum_probs=59.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~ 120 (279)
+++.|+||+|.+|..++..|+..|. +|+++|+++....... .+.. ...+.. .....+..+.+...|++|++||..
T Consensus 15 k~~lITGas~gIG~ala~~l~~~G~--~Vi~~~r~~~~~~~~~-~~~~-~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~ 90 (245)
T PRK12367 15 KRIGITGASGALGKALTKAFRAKGA--KVIGLTHSKINNSESN-DESP-NEWIKWECGKEESLDKQLASLDVLILNHGIN 90 (245)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCC--EEEEEECCchhhhhhh-ccCC-CeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence 4899999999999999999999997 9999998752111110 1111 111111 111112334567899999999874
Q ss_pred CCCCCch---hhHHHhhHH----HHHHHHHHHHH
Q 023671 121 RKPGMTR---DDLFNINAG----IVRTLCEGIAK 147 (279)
Q Consensus 121 ~k~g~~r---~d~~~~N~~----i~~~i~~~I~~ 147 (279)
.....+. .+.+..|+. +++.+.+.+.+
T Consensus 91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~ 124 (245)
T PRK12367 91 PGGRQDPENINKALEINALSSWRLLELFEDIALN 124 (245)
T ss_pred CcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 3222222 334566665 44444555543
No 233
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=97.25 E-value=0.0027 Score=55.18 Aligned_cols=35 Identities=26% Similarity=0.478 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+++|.|+||+|.+|..++..|..+|+ +|.++++++
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~g~--~v~~~~r~~ 39 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAADGA--KVVIYDSNE 39 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 46899999999999999999999998 899999876
No 234
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=97.25 E-value=0.0023 Score=56.50 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=31.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
|+|.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~--~V~~~~r~~ 34 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH--KVIATGRRQ 34 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCH
Confidence 5899999999999999999999998 999999875
No 235
>PRK05650 short chain dehydrogenase; Provisional
Probab=97.24 E-value=0.0037 Score=55.84 Aligned_cols=113 Identities=18% Similarity=0.140 Sum_probs=64.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------hC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LT 108 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l~ 108 (279)
++|.|+||+|.+|..++..|+.+|. +|++.|++.. .....++.... .++..+. ..+|. .+. +.
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~ 76 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGW--RLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWG 76 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 3789999999999999999999998 8999998752 22222333221 1122111 11121 122 23
Q ss_pred CCCEEEEccCCCCCC---CCchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEecC
Q 023671 109 GMDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 109 ~ADiVIitag~~~k~---g~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TN 159 (279)
..|++|+++|..... ..+.. ..+..|+ .+.+.+.+.+++.. .+.|+++|.
T Consensus 77 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~~~iv~vsS 136 (270)
T PRK05650 77 GIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQK-SGRIVNIAS 136 (270)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCC-CCEEEEECC
Confidence 689999999864321 11111 2345564 34455555555543 345555553
No 236
>PRK12827 short chain dehydrogenase; Provisional
Probab=97.24 E-value=0.0041 Score=54.24 Aligned_cols=103 Identities=19% Similarity=0.313 Sum_probs=61.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhH----HhhhhcccCCCeEEEEeC-CCC---HHhhh--
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGV----TADISHMDTGAVVRGFLG-QPQ---LENAL-- 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~----~~DL~~~~~~~~v~~~~~-~~d---~~eal-- 107 (279)
+.++|.|+||+|++|..++..|+.+|. ++++++.... ... ..++... ...+..+.. ..| +.+.+
T Consensus 5 ~~~~ilItGasg~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~ 80 (249)
T PRK12827 5 DSRRVLITGGSGGLGRAIAVRLAADGA--DVIVLDIHPMRGRAEADAVAAGIEAA--GGKALGLAFDVRDFAATRAALDA 80 (249)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--eEEEEcCcccccHHHHHHHHHHHHhc--CCcEEEEEccCCCHHHHHHHHHH
Confidence 346899999999999999999999998 8999886431 111 1122111 112222111 112 12222
Q ss_pred -----CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHH
Q 023671 108 -----TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIA 146 (279)
Q Consensus 108 -----~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~ 146 (279)
...|.||+++|..... ..+. ...+..|......+++.+.
T Consensus 81 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~ 130 (249)
T PRK12827 81 GVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAAL 130 (249)
T ss_pred HHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHH
Confidence 4689999999865321 1111 2345667777777777665
No 237
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.24 E-value=0.0023 Score=62.70 Aligned_cols=97 Identities=15% Similarity=0.174 Sum_probs=62.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC--CCeEEEEeCCCCHHhhhC---CCCEEEEc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALT---GMDLVIIP 116 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~---~ADiVIit 116 (279)
.+|+|||. |.+|+++|..|+..|+ +|.++|+++.. +.++..... ...+.. ++++++.++ ++|+||++
T Consensus 2 ~~IgvIGL-G~MG~~lA~nL~~~G~--~V~v~dr~~~~--~~~l~~~~~~~g~~i~~---~~s~~e~v~~l~~~d~Iil~ 73 (470)
T PTZ00142 2 SDIGLIGL-AVMGQNLALNIASRGF--KISVYNRTYEK--TEEFVKKAKEGNTRVKG---YHTLEELVNSLKKPRKVILL 73 (470)
T ss_pred CEEEEEeE-hHHHHHHHHHHHHCCC--eEEEEeCCHHH--HHHHHHhhhhcCCccee---cCCHHHHHhcCCCCCEEEEE
Confidence 48999998 9999999999999998 99999997621 122222100 111222 346666665 58988887
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCC
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV 161 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPv 161 (279)
.-. -+.++++++.+..+ .|+.++|..+|-.
T Consensus 74 v~~---------------~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 74 IKA---------------GEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred eCC---------------hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 521 13344555555544 3677787777643
No 238
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.24 E-value=0.0013 Score=53.51 Aligned_cols=78 Identities=19% Similarity=0.255 Sum_probs=53.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
..+..++.|+|| |-+|..++..|...|. .+|.+++++.. .+.+|........+.... .+++.+.+.++|+||.+.
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~-~~i~i~nRt~~--ra~~l~~~~~~~~~~~~~-~~~~~~~~~~~DivI~aT 83 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGA-KEITIVNRTPE--RAEALAEEFGGVNIEAIP-LEDLEEALQEADIVINAT 83 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTS-SEEEEEESSHH--HHHHHHHHHTGCSEEEEE-GGGHCHHHHTESEEEE-S
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCC-CEEEEEECCHH--HHHHHHHHcCccccceee-HHHHHHHHhhCCeEEEec
Confidence 456679999999 9999999999999874 58999998752 222222221122333322 235667789999999987
Q ss_pred CCC
Q 023671 118 GVP 120 (279)
Q Consensus 118 g~~ 120 (279)
+.+
T Consensus 84 ~~~ 86 (135)
T PF01488_consen 84 PSG 86 (135)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 239
>PRK05875 short chain dehydrogenase; Provisional
Probab=97.24 E-value=0.0056 Score=54.75 Aligned_cols=117 Identities=14% Similarity=0.097 Sum_probs=65.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 108 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------ 108 (279)
.++|.|+||+|++|+.++..|+.+|+ +|+++++++ ......++.......++..+. .-.| +.+.++
T Consensus 7 ~k~vlItGasg~IG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 7 DRTYLVTGGGSGIGKGVAAGLVAAGA--AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999998 999999865 222222332211011222211 1112 122222
Q ss_pred -CCCEEEEccCCCCCC----CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671 109 -GMDLVIIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (279)
Q Consensus 109 -~ADiVIitag~~~k~----g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN 159 (279)
..|++|+++|..... ..+. .+.+..|+.....+.+.+.+. ...+.++++|.
T Consensus 85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS 146 (276)
T PRK05875 85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISS 146 (276)
T ss_pred CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 689999999854221 1121 223445655555555444332 23456666553
No 240
>PRK06179 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.0034 Score=55.99 Aligned_cols=35 Identities=17% Similarity=0.093 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.++|.|+||+|.+|.+++..|+.+|. +|++.+++.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~--~V~~~~r~~ 38 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY--RVFGTSRNP 38 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCh
Confidence 34799999999999999999999997 899999875
No 241
>PRK06138 short chain dehydrogenase; Provisional
Probab=97.23 E-value=0.0052 Score=53.90 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+++.|+||+|.+|+.++..|+..|. +|++++++.
T Consensus 4 ~~k~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~ 39 (252)
T PRK06138 4 AGRVAIVTGAGSGIGRATAKLFAREGA--RVVVADRDA 39 (252)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--eEEEecCCH
Confidence 345899999999999999999999987 899999875
No 242
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=97.22 E-value=0.0044 Score=54.14 Aligned_cols=116 Identities=18% Similarity=0.251 Sum_probs=64.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeC-CCC---HHhhh-------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLG-QPQ---LENAL------- 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal------- 107 (279)
.+++.|+|++|.+|.+++..|+.+|. +|++++++.. .....++... ..++..+.. .++ +.+++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~--~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV--NVGLLARTEENLKAVAEEVEAY--GVKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 35899999999999999999999997 9999998751 1122233221 122332211 112 22222
Q ss_pred CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCC
Q 023671 108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 160 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNP 160 (279)
.+.|+||+++|...... .+. ...+..|+.-...+.+.+.+. ...+.+++++..
T Consensus 83 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~ 144 (239)
T PRK07666 83 GSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISST 144 (239)
T ss_pred CCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcch
Confidence 37999999998643211 111 223555655444444444322 223445555543
No 243
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.22 E-value=0.0041 Score=56.96 Aligned_cols=65 Identities=26% Similarity=0.320 Sum_probs=43.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HH--hhhhcccCCCeEEEEeCCCC-HHhhhCCCCEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VT--ADISHMDTGAVVRGFLGQPQ-LENALTGMDLVI 114 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g---~~--~DL~~~~~~~~v~~~~~~~d-~~eal~~ADiVI 114 (279)
+++|+|+|. |.+|.+++..|...|+ .+.+++.+...+ .+ +++.+.. +.+ ..++.++||+||
T Consensus 3 ~~~v~IvG~-GliG~s~a~~l~~~g~--~v~i~g~d~~~~~~~~a~~lgv~d~~----------~~~~~~~~~~~aD~Vi 69 (279)
T COG0287 3 SMKVGIVGL-GLMGGSLARALKEAGL--VVRIIGRDRSAATLKAALELGVIDEL----------TVAGLAEAAAEADLVI 69 (279)
T ss_pred CcEEEEECC-chHHHHHHHHHHHcCC--eEEEEeecCcHHHHHHHhhcCccccc----------ccchhhhhcccCCEEE
Confidence 569999998 9999999999999999 555555544111 11 2222211 112 246788999999
Q ss_pred EccC
Q 023671 115 IPAG 118 (279)
Q Consensus 115 itag 118 (279)
++..
T Consensus 70 vavP 73 (279)
T COG0287 70 VAVP 73 (279)
T ss_pred Eecc
Confidence 9864
No 244
>PRK08265 short chain dehydrogenase; Provisional
Probab=97.21 E-value=0.0056 Score=54.53 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+++.|+||+|.+|..++..|+..|. +|++.|++.
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA--RVAIVDIDA 40 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999999998 999999875
No 245
>PRK07478 short chain dehydrogenase; Provisional
Probab=97.20 E-value=0.0064 Score=53.70 Aligned_cols=114 Identities=17% Similarity=0.170 Sum_probs=66.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l 107 (279)
.+++.|+||+|.+|..++..|+..|. +|++.++++ ......++.+.. .++..+. ...+ ..+. +
T Consensus 6 ~k~~lItGas~giG~~ia~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (254)
T PRK07478 6 GKVAIITGASSGIGRAAAKLFAREGA--KVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERF 81 (254)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 45899999999999999999999998 899999875 222223333321 1222211 1112 1122 2
Q ss_pred CCCCEEEEccCCCC--CC--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPR--KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~--k~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
...|++|++||... .+ ..+. ...+..|+. ..+.+.+.+.+.. .+.+++++.
T Consensus 82 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~-~~~iv~~sS 143 (254)
T PRK07478 82 GGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARG-GGSLIFTST 143 (254)
T ss_pred CCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CceEEEEec
Confidence 36899999998632 11 1122 234566653 5555566665543 345555553
No 246
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=97.20 E-value=0.0022 Score=58.85 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=49.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
+||++||- |.+|+.+|..|+..|+ ++..+|+++.+. +..+..... .. ..+..++.++||+||.+..
T Consensus 1 ~kIafIGL-G~MG~pmA~~L~~aG~--~v~v~~r~~~ka-~~~~~~~Ga----~~---a~s~~eaa~~aDvVitmv~ 66 (286)
T COG2084 1 MKIAFIGL-GIMGSPMAANLLKAGH--EVTVYNRTPEKA-AELLAAAGA----TV---AASPAEAAAEADVVITMLP 66 (286)
T ss_pred CeEEEEcC-chhhHHHHHHHHHCCC--EEEEEeCChhhh-hHHHHHcCC----cc---cCCHHHHHHhCCEEEEecC
Confidence 48999998 9999999999999999 999999986332 222333211 11 1244688999999999864
No 247
>PRK13243 glyoxylate reductase; Reviewed
Probab=97.20 E-value=0.002 Score=60.44 Aligned_cols=93 Identities=20% Similarity=0.260 Sum_probs=60.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++|+|||. |.+|+.+|..|...|. +|..+|+........ .. . .. . .++.+.+++||+|+++..
T Consensus 148 L~gktvgIiG~-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~~~--~~-~----~~-~---~~l~ell~~aDiV~l~lP 213 (333)
T PRK13243 148 VYGKTIGIIGF-GRIGQAVARRAKGFGM--RILYYSRTRKPEAEK--EL-G----AE-Y---RPLEELLRESDFVSLHVP 213 (333)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCChhhHH--Hc-C----CE-e---cCHHHHHhhCCEEEEeCC
Confidence 34679999999 9999999999988887 999999864211111 11 0 11 1 256788999999999873
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.. + . +-.++.+ +.+....|++++|+++
T Consensus 214 ~t--~-~--------T~~~i~~--~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 214 LT--K-E--------TYHMINE--ERLKLMKPTAILVNTA 240 (333)
T ss_pred CC--h-H--------HhhccCH--HHHhcCCCCeEEEECc
Confidence 22 1 1 1111211 2333345889999985
No 248
>PRK07576 short chain dehydrogenase; Provisional
Probab=97.20 E-value=0.0066 Score=54.26 Aligned_cols=118 Identities=18% Similarity=0.200 Sum_probs=65.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------- 106 (279)
+.++|.|+||+|.+|..++..|+..|. +|+++|++. ......++.... .++..+. ..++ +.+.
T Consensus 8 ~~k~ilItGasggIG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 83 (264)
T PRK07576 8 AGKNVVVVGGTSGINLGIAQAFARAGA--NVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADE 83 (264)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999998 899999865 222222332211 1111111 1112 2222
Q ss_pred hCCCCEEEEccCCCCCC---CCchh---hHHHhhHHHHHHHHHHHHHh--CCCceEEEecCCC
Q 023671 107 LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIVRTLCEGIAKC--CPNATVNLISNPV 161 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~~r~---d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TNPv 161 (279)
+...|++|+++|..... ..+.. ..+..|+.-...+.+...+. .+++.|+++|.+.
T Consensus 84 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~ 146 (264)
T PRK07576 84 FGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQ 146 (264)
T ss_pred cCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChh
Confidence 23579999998753211 11222 23445655444444444332 1346677766543
No 249
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.19 E-value=0.0071 Score=53.64 Aligned_cols=115 Identities=21% Similarity=0.305 Sum_probs=65.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTG 109 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~~ 109 (279)
.+++.|+||+|.+|..++..|+..|. +|++++.++.......+... ..++..+. .-++ ..+. +..
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKAGA--DIVGVGVAEAPETQAQVEAL--GRKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCchHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 45889999999999999999999998 99999875422222222221 11222111 1112 2222 235
Q ss_pred CCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 110 MDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 110 ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
.|++|++||..... ..+. ...+..|+. +.+.+.+.+.+....+.|++++.
T Consensus 84 iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS 143 (251)
T PRK12481 84 IDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIAS 143 (251)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 79999999874321 1111 223445543 45556666655443466666654
No 250
>PRK06841 short chain dehydrogenase; Provisional
Probab=97.19 E-value=0.0032 Score=55.51 Aligned_cols=114 Identities=19% Similarity=0.318 Sum_probs=64.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l 107 (279)
+.++|.|+||+|.+|.+++..|+++|. +|++.+++.. .....++.. ..+..+. ...+ +.+. +
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~----~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 87 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGA--RVALLDRSEDVAEVAAQLLG----GNAKGLVCDVSDSQSVEAAVAAVISAF 87 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHhhC----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 345899999999999999999999997 8999998752 111222211 1111110 1112 1111 2
Q ss_pred CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN 159 (279)
...|+||+++|...... .+. ...+..|+.-...+.+.+.+. ...+.++++|.
T Consensus 88 ~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 148 (255)
T PRK06841 88 GRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLAS 148 (255)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 36799999998643211 111 224556665555555554432 22355665553
No 251
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=97.19 E-value=0.0052 Score=53.28 Aligned_cols=113 Identities=17% Similarity=0.257 Sum_probs=65.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------CC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG 109 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------~~ 109 (279)
|.|+|++|.+|+.++..|+++|+ +|++++.+. ......++.+.. .++.... .-+| +.+.+ ..
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA--KVIITYRSSEEGAEEVVEELKAYG--VKALGVVCDVSDREDVKAVVEEIEEELGP 76 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 46899999999999999999998 899998764 112223333221 1122111 1112 22222 34
Q ss_pred CCEEEEccCCCCCC---CC---chhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCC
Q 023671 110 MDLVIIPAGVPRKP---GM---TRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISNP 160 (279)
Q Consensus 110 ADiVIitag~~~k~---g~---~r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNP 160 (279)
.|+||+++|..... +. ...+.+..|+.....+.+.+.++ ...+.++++|..
T Consensus 77 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~ 136 (239)
T TIGR01830 77 IDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSV 136 (239)
T ss_pred CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCc
Confidence 69999999864221 11 12345667777666666666543 223456665543
No 252
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.18 E-value=0.0016 Score=60.27 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=50.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHH-------------hhhhcccCCCeEEEEeCCCCHHhhh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVT-------------ADISHMDTGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~-------------~DL~~~~~~~~v~~~~~~~d~~eal 107 (279)
++||+-||| |+||......++.+=.--+|.++|++..+-.+ .|........++-. ++|.+.++
T Consensus 1 ~~kicciga-gyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlff---stdiekai 76 (481)
T KOG2666|consen 1 MVKICCIGA-GYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFF---STDIEKAI 76 (481)
T ss_pred CceEEEecC-cccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceee---ecchHHHh
Confidence 469999999 99998776544433222399999998621110 11221112233332 35889999
Q ss_pred CCCCEEEEccCCCCCC
Q 023671 108 TGMDLVIIPAGVPRKP 123 (279)
Q Consensus 108 ~~ADiVIitag~~~k~ 123 (279)
+.||+|++....|.|.
T Consensus 77 ~eadlvfisvntptkt 92 (481)
T KOG2666|consen 77 KEADLVFISVNTPTKT 92 (481)
T ss_pred hhcceEEEEecCCccc
Confidence 9999999998887654
No 253
>PLN02256 arogenate dehydrogenase
Probab=97.16 E-value=0.0041 Score=57.66 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=45.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhh-CCCCEEEEcc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENAL-TGMDLVIIPA 117 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal-~~ADiVIita 117 (279)
+++||+|||+ |.+|..++..|...|. +|+.+|.+.....+.++ . +.. .++..+.+ .++|+||++.
T Consensus 35 ~~~kI~IIG~-G~mG~slA~~L~~~G~--~V~~~d~~~~~~~a~~~---g----v~~---~~~~~e~~~~~aDvVilav 100 (304)
T PLN02256 35 RKLKIGIVGF-GNFGQFLAKTFVKQGH--TVLATSRSDYSDIAAEL---G----VSF---FRDPDDFCEEHPDVVLLCT 100 (304)
T ss_pred CCCEEEEEee-CHHHHHHHHHHHhCCC--EEEEEECccHHHHHHHc---C----Cee---eCCHHHHhhCCCCEEEEec
Confidence 5679999998 9999999999988886 89999987522112211 1 111 12455555 4799999986
No 254
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.16 E-value=0.0031 Score=58.06 Aligned_cols=64 Identities=16% Similarity=0.277 Sum_probs=44.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC---CCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~---ADiVIita 117 (279)
|||+|||. |.+|++++..|...++ +|.++|+++.. ...+.+.. ... ..++++.+++ +|+||++.
T Consensus 1 m~Ig~IGl-G~mG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~s~~~~~~~~~~advVi~~v 67 (299)
T PRK12490 1 MKLGLIGL-GKMGGNMAERLREDGH--EVVGYDVNQEA--VDVAGKLG----ITA---RHSLEELVSKLEAPRTIWVMV 67 (299)
T ss_pred CEEEEEcc-cHHHHHHHHHHHhCCC--EEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHHhCCCCCEEEEEe
Confidence 48999998 9999999999999887 89999987521 12222211 111 2345565555 69999985
No 255
>PRK09186 flagellin modification protein A; Provisional
Probab=97.16 E-value=0.0066 Score=53.43 Aligned_cols=36 Identities=25% Similarity=0.264 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.++|.|+||+|.+|.+++..|+..|+ +|++.++++
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~--~v~~~~r~~ 38 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGG--IVIAADIDK 38 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEecCh
Confidence 456899999999999999999999998 899998865
No 256
>PRK08219 short chain dehydrogenase; Provisional
Probab=97.16 E-value=0.0034 Score=54.05 Aligned_cols=75 Identities=21% Similarity=0.225 Sum_probs=46.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeE-EE-EeCCCCHHhhhC---CCCEEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVV-RG-FLGQPQLENALT---GMDLVII 115 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v-~~-~~~~~d~~eal~---~ADiVIi 115 (279)
++++.|+||+|++|..++..|+++ . +|+++|++... ..++.+......+ .. .....++.++++ +.|+||+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~--~V~~~~r~~~~--~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 77 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H--TLLLGGRPAER--LDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVH 77 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C--CEEEEeCCHHH--HHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEE
Confidence 468999999999999999999887 5 89999986521 1122211100111 11 010112334443 6999999
Q ss_pred ccCCC
Q 023671 116 PAGVP 120 (279)
Q Consensus 116 tag~~ 120 (279)
++|..
T Consensus 78 ~ag~~ 82 (227)
T PRK08219 78 NAGVA 82 (227)
T ss_pred CCCcC
Confidence 99864
No 257
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.0093 Score=52.28 Aligned_cols=78 Identities=24% Similarity=0.279 Sum_probs=49.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH----------HhhhC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL----------ENALT 108 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal~ 108 (279)
+++.|+||+|.+|.+++..|+.+|. +|++.+++. ......++........+.... ..++. .+.+.
T Consensus 3 k~vlItGas~giG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKGR--DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4799999999999999999999986 899999876 222222332211112222211 11222 11234
Q ss_pred CCCEEEEccCCCC
Q 023671 109 GMDLVIIPAGVPR 121 (279)
Q Consensus 109 ~ADiVIitag~~~ 121 (279)
..|++|+++|...
T Consensus 81 ~id~vi~~ag~~~ 93 (248)
T PRK08251 81 GLDRVIVNAGIGK 93 (248)
T ss_pred CCCEEEECCCcCC
Confidence 6899999998753
No 258
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.15 E-value=0.0018 Score=52.91 Aligned_cols=116 Identities=18% Similarity=0.189 Sum_probs=70.4
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHh-----hhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTA-----DISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~-----DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|+|+|+ |.+|..+|..|.+.+. +|.+++..+ ..... .+........+.......+..+....+|+||+|.-
T Consensus 1 I~I~G~-GaiG~~~a~~L~~~g~--~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK 76 (151)
T PF02558_consen 1 ILIIGA-GAIGSLYAARLAQAGH--DVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK 76 (151)
T ss_dssp EEEEST-SHHHHHHHHHHHHTTC--EEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred CEEECc-CHHHHHHHHHHHHCCC--ceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence 789999 9999999999999888 999999865 11111 11111101111111111221246789999999962
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~ 186 (279)
.. + .++.++.++.+. |++.++.+-|=++.... +.+ -+|+.+|++-
T Consensus 77 a~----~------------~~~~l~~l~~~~~~~t~iv~~qNG~g~~~~-----l~~--~~~~~~v~~g 122 (151)
T PF02558_consen 77 AY----Q------------LEQALQSLKPYLDPNTTIVSLQNGMGNEEV-----LAE--YFPRPRVLGG 122 (151)
T ss_dssp GG----G------------HHHHHHHHCTGEETTEEEEEESSSSSHHHH-----HHC--HSTGSGEEEE
T ss_pred cc----c------------hHHHHHHHhhccCCCcEEEEEeCCCCcHHH-----HHH--HcCCCcEEEE
Confidence 11 1 345666677765 67788888888876543 232 2566778664
No 259
>PRK06701 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.0049 Score=56.14 Aligned_cols=118 Identities=14% Similarity=0.142 Sum_probs=69.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh---
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL--- 107 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal--- 107 (279)
..+.++|.|+||+|.+|++++..|+..|. +|+++++++. ......+... ..++..+. ...+ +.+.+
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~--~V~l~~r~~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~i 118 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGA--DIAIVYLDEHEDANETKQRVEKE--GVKCLLIPGDVSDEAFCKDAVEET 118 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCcchHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHH
Confidence 34456899999999999999999999997 9999998752 1122222211 11222211 1112 11222
Q ss_pred ----CCCCEEEEccCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHh-CCCceEEEecC
Q 023671 108 ----TGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 159 (279)
Q Consensus 108 ----~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TN 159 (279)
...|+||++||.... + ..+. ...+..|+.....+++.+.+. .+.+.+|++|.
T Consensus 119 ~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS 182 (290)
T PRK06701 119 VRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGS 182 (290)
T ss_pred HHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 357999999986321 1 1111 235667777777777776654 34456666654
No 260
>PRK07856 short chain dehydrogenase; Provisional
Probab=97.14 E-value=0.0074 Score=53.28 Aligned_cols=110 Identities=13% Similarity=0.132 Sum_probs=63.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCC---CHHhhh-------C
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQP---QLENAL-------T 108 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~---d~~eal-------~ 108 (279)
+.+++.|+||+|.+|..++..|+..|. +|+++|++... . .. ...+..+. ... ++.+.+ .
T Consensus 5 ~~k~~lItGas~gIG~~la~~l~~~g~--~v~~~~r~~~~-~---~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 74 (252)
T PRK07856 5 TGRVVLVTGGTRGIGAGIARAFLAAGA--TVVVCGRRAPE-T---VD----GRPAEFHAADVRDPDQVAALVDAIVERHG 74 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCChhh-h---hc----CCceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 346899999999999999999999998 99999986521 0 00 01111110 011 122223 3
Q ss_pred CCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHH----hCCCceEEEecC
Q 023671 109 GMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAK----CCPNATVNLISN 159 (279)
Q Consensus 109 ~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~----~~p~a~viv~TN 159 (279)
..|+||+++|..... ..+ ....+..|+.....+.+.+.+ ....+.++++|.
T Consensus 75 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS 135 (252)
T PRK07856 75 RLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGS 135 (252)
T ss_pred CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 469999999864211 111 123455666555555554433 223356666654
No 261
>PRK06057 short chain dehydrogenase; Provisional
Probab=97.13 E-value=0.0026 Score=56.26 Aligned_cols=36 Identities=25% Similarity=0.274 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.++|.|+||+|.+|.+++..|++.|. +|+++|++.
T Consensus 6 ~~~~vlItGasggIG~~~a~~l~~~G~--~v~~~~r~~ 41 (255)
T PRK06057 6 AGRVAVITGGGSGIGLATARRLAAEGA--TVVVGDIDP 41 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 346899999999999999999999997 999999875
No 262
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=97.13 E-value=0.0045 Score=57.05 Aligned_cols=115 Identities=14% Similarity=0.077 Sum_probs=65.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------ 107 (279)
++++|.|+||+|.+|..++..|+..|. +|++.++++. .....++... ...+..+. .-+| ..+.+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~--~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 80 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW--HVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLGDLDSVRRFVDDFRAL 80 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 355899999999999999999999997 8999998752 2222333211 11222211 1112 12222
Q ss_pred -CCCCEEEEccCCCCC----CCCch---hhHHHhhHH----HHHHHHHHHHHhCC-CceEEEec
Q 023671 108 -TGMDLVIIPAGVPRK----PGMTR---DDLFNINAG----IVRTLCEGIAKCCP-NATVNLIS 158 (279)
Q Consensus 108 -~~ADiVIitag~~~k----~g~~r---~d~~~~N~~----i~~~i~~~I~~~~p-~a~viv~T 158 (279)
...|++|++||.... ...+. ...+..|.. +.+.+.+.+.+... .+.|+++|
T Consensus 81 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vs 144 (322)
T PRK07453 81 GKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILG 144 (322)
T ss_pred CCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEc
Confidence 248999999986321 11222 234556654 45555555555432 24555554
No 263
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=97.13 E-value=0.0055 Score=56.96 Aligned_cols=92 Identities=20% Similarity=0.257 Sum_probs=60.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
..++|+|+|. |.+|+.+|..|..-|. +|..+|...... .. +..+....++++.+++||+|+++...
T Consensus 135 ~g~tvgIvG~-G~IG~~vA~~l~afG~--~V~~~~~~~~~~--~~---------~~~~~~~~~l~e~l~~aDvvv~~lPl 200 (312)
T PRK15469 135 EDFTIGILGA-GVLGSKVAQSLQTWGF--PLRCWSRSRKSW--PG---------VQSFAGREELSAFLSQTRVLINLLPN 200 (312)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCCCCC--CC---------ceeecccccHHHHHhcCCEEEECCCC
Confidence 3469999998 9999999999998888 999999754110 00 00011123678899999999998632
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
. ..+..++. .+.+.+..|++++|+++
T Consensus 201 t-----------~~T~~li~--~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 201 T-----------PETVGIIN--QQLLEQLPDGAYLLNLA 226 (312)
T ss_pred C-----------HHHHHHhH--HHHHhcCCCCcEEEECC
Confidence 2 11222221 23444455889999975
No 264
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=97.12 E-value=0.0095 Score=52.78 Aligned_cols=35 Identities=17% Similarity=0.186 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.++|.|+||+|.+|..++..|+..|. +|++++.++
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~~~ 49 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKAGA--DIIITTHGT 49 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 46899999999999999999999998 899998864
No 265
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=97.12 E-value=0.0075 Score=53.42 Aligned_cols=115 Identities=15% Similarity=0.229 Sum_probs=65.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------CC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ---LENAL-------TG 109 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal-------~~ 109 (279)
.+.+.|+|++|.+|..++..|+..|. +|+++|..+......++.... ..+..+. ..+| +.+.+ ..
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEAGC--DIVGINIVEPTETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEecCcchHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999997 899888755322222232211 1122111 1112 12222 36
Q ss_pred CCEEEEccCCCCCC---CCc---hhhHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671 110 MDLVIIPAGVPRKP---GMT---RDDLFNINAGI----VRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 110 ADiVIitag~~~k~---g~~---r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN 159 (279)
.|++|++||..... ..+ -.+.+..|+.. .+.+.+.+.+..+.+.++++|.
T Consensus 86 ~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS 145 (253)
T PRK08993 86 IDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIAS 145 (253)
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECc
Confidence 89999999874311 111 12345556543 4444455544444566666654
No 266
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.10 E-value=0.0027 Score=57.27 Aligned_cols=33 Identities=12% Similarity=0.255 Sum_probs=30.0
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
||.|+||+|++|++++..|+..|+ +|....++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~--~V~~~~R~~ 33 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASV--PFLVASRSS 33 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCC--cEEEEeCCC
Confidence 588999999999999999999887 899998875
No 267
>PRK12746 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.0092 Score=52.51 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=62.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe-CCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhhh------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD-VVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENAL------ 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D-~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~eal------ 107 (279)
.++|.|+||+|.+|++++..|+.+|. ++++.+ +++. .....++.... ..+..+. .-.|. .+++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~--~v~i~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~i~~~~~~~~~~ 81 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA--LVAIHYGRNKQAADETIREIESNG--GKAFLIEADLNSIDGVKKLVEQLKNE 81 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCcCCHHHHHHHHHHHHHH
Confidence 36899999999999999999999987 777653 4331 11112222111 1122111 11121 1112
Q ss_pred -------CCCCEEEEccCCCCCCC---Cch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671 108 -------TGMDLVIIPAGVPRKPG---MTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 159 (279)
Q Consensus 108 -------~~ADiVIitag~~~k~g---~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN 159 (279)
.+.|+||+++|...... .+. ...+..|+.....+.+.+.+.. ..+.++++|.
T Consensus 82 ~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS 147 (254)
T PRK12746 82 LQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISS 147 (254)
T ss_pred hccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 25899999998643211 111 2334567766666666665542 2245555543
No 268
>PRK05854 short chain dehydrogenase; Provisional
Probab=97.10 E-value=0.0086 Score=55.21 Aligned_cols=115 Identities=22% Similarity=0.155 Sum_probs=65.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---H-------hh
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---E-------NA 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~-------ea 106 (279)
+.+++.|+||+|.+|..++..|+..|. +|++.++++. .....++........+..+. .-.|+ . +.
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~--~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~ 90 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA--EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAE 90 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999997 9999998762 22223333221111222211 11121 1 11
Q ss_pred hCCCCEEEEccCCCCCCC--Cc---hhhHHHhhH----HHHHHHHHHHHHhCCCceEEEec
Q 023671 107 LTGMDLVIIPAGVPRKPG--MT---RDDLFNINA----GIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 107 l~~ADiVIitag~~~k~g--~~---r~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~T 158 (279)
....|++|+.||....+. .+ -...+..|. .+.+.+.+.+.+. .+.|+++|
T Consensus 91 ~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~--~~riv~vs 149 (313)
T PRK05854 91 GRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAG--RARVTSQS 149 (313)
T ss_pred CCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhC--CCCeEEEe
Confidence 245899999998643211 11 122344453 3455666666543 34455544
No 269
>PRK08589 short chain dehydrogenase; Validated
Probab=97.10 E-value=0.014 Score=52.44 Aligned_cols=115 Identities=16% Similarity=0.224 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------h
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------L 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l 107 (279)
+.+++.|+||+|.+|..++..|+..|. +|+++|+++ ......++.+.. .++..+. .-++ ..+. +
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~--~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA--YVLAVDIAEAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQF 80 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCcHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHc
Confidence 345899999999999999999999997 999999874 222233333221 1122111 1112 1111 2
Q ss_pred CCCCEEEEccCCCCCCC----Cch---hhHHHhhH----HHHHHHHHHHHHhCCCceEEEecCC
Q 023671 108 TGMDLVIIPAGVPRKPG----MTR---DDLFNINA----GIVRTLCEGIAKCCPNATVNLISNP 160 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g----~~r---~d~~~~N~----~i~~~i~~~I~~~~p~a~viv~TNP 160 (279)
...|++|++||.....+ .+. ...+..|+ .+.+.+.+.+.+. .+.|++++..
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~--~g~iv~isS~ 142 (272)
T PRK08589 81 GRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQ--GGSIINTSSF 142 (272)
T ss_pred CCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHc--CCEEEEeCch
Confidence 35799999998753211 111 12233444 3445566666543 3667666643
No 270
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=97.09 E-value=0.0046 Score=54.60 Aligned_cols=35 Identities=29% Similarity=0.331 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.+++.|+||+|.+|..++..|+..|. +|++.|+++
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~G~--~vvl~~r~~ 43 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEYGA--EIIINDITA 43 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCC--EEEEEcCCH
Confidence 45899999999999999999999997 999999875
No 271
>PRK06198 short chain dehydrogenase; Provisional
Probab=97.09 E-value=0.0077 Score=53.18 Aligned_cols=116 Identities=14% Similarity=0.195 Sum_probs=64.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcE-EEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH---Hhh------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSV-LHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL---ENA------ 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~e-v~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea------ 106 (279)
+.++|.|+||+|.+|..++..|...|. + |+++|++.. .....++... ...+..+. .-++. .+.
T Consensus 5 ~~k~vlItGa~g~iG~~la~~l~~~G~--~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~ 80 (260)
T PRK06198 5 DGKVALVTGGTQGLGAAIARAFAERGA--AGLVICGRNAEKGEAQAAELEAL--GAKAVFVQADLSDVEDCRRVVAAADE 80 (260)
T ss_pred CCcEEEEeCCCchHHHHHHHHHHHCCC--CeEEEEcCCHHHHHHHHHHHHhc--CCeEEEEEccCCCHHHHHHHHHHHHH
Confidence 346899999999999999999998886 6 999998652 2222223211 12222111 11121 111
Q ss_pred -hCCCCEEEEccCCCCCC---CCchh---hHHHhhHHHH----HHHHHHHHHhCCCceEEEecC
Q 023671 107 -LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAGIV----RTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 107 -l~~ADiVIitag~~~k~---g~~r~---d~~~~N~~i~----~~i~~~I~~~~p~a~viv~TN 159 (279)
+.+.|++|+++|..... ..+.. ..+..|+.-. +...+.+.+....+.++++|.
T Consensus 81 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss 144 (260)
T PRK06198 81 AFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGS 144 (260)
T ss_pred HhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 23689999999875322 11222 2345555443 344444444333455665553
No 272
>PLN00016 RNA-binding protein; Provisional
Probab=97.09 E-value=0.0048 Score=58.40 Aligned_cols=36 Identities=25% Similarity=0.140 Sum_probs=32.7
Q ss_pred CCcEEEEE----cCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAIL----GAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~II----GA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+++||.|+ ||+|++|++++..|+..|+ +|.+++++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~--~V~~l~R~~ 90 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGH--EVTLFTRGK 90 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCC--EEEEEecCC
Confidence 35689999 9999999999999999998 999999875
No 273
>PRK06500 short chain dehydrogenase; Provisional
Probab=97.09 E-value=0.0073 Score=52.84 Aligned_cols=100 Identities=20% Similarity=0.199 Sum_probs=60.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCH----------Hhhh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQL----------ENAL 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~----------~eal 107 (279)
.++|.|+||+|.+|..++..|+..|. +|+++++++. .....++. ..+..+. ...|. .+.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~--~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA--RVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAF 78 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHh
Confidence 45899999999999999999999997 8999998751 11111111 1111111 11121 1123
Q ss_pred CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHH
Q 023671 108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAK 147 (279)
Q Consensus 108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~ 147 (279)
...|+||+++|..... ..+. ...+..|+.....+.+.+.+
T Consensus 79 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~ 124 (249)
T PRK06500 79 GRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLP 124 (249)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4689999999864321 1122 23466777766666666664
No 274
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.08 E-value=0.0048 Score=58.69 Aligned_cols=57 Identities=23% Similarity=0.198 Sum_probs=43.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.+||+|||.+|.+|.+++..|.... ..+|+.+|.. +.. ..+..+.+++||+||++..
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~----------d~~----------~~~~~~~v~~aDlVilavP 60 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPA----------DPG----------SLDPATLLQRADVLIFSAP 60 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCC----------ccc----------cCCHHHHhcCCCEEEEeCC
Confidence 4599999998999999999998752 3389999863 110 1245677999999999963
No 275
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=97.08 E-value=0.0076 Score=52.81 Aligned_cols=115 Identities=13% Similarity=0.205 Sum_probs=63.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------ 107 (279)
.+++.|+||+|.+|++++..|+..|. ++++.+... ......++.+.. .++..+. ...+ +.+++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA--KVVINYNSSKEAAENLVNELGKEG--HDVYAVQADVSKVEDANRLVEEAVNH 81 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC--EEEEEcCCcHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 45899999999999999999999887 777665432 122223333211 1222221 1112 12222
Q ss_pred -CCCCEEEEccCCCCCCC------CchhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671 108 -TGMDLVIIPAGVPRKPG------MTRDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (279)
Q Consensus 108 -~~ADiVIitag~~~k~g------~~r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN 159 (279)
...|+||+++|...... ..-.+.+..|+.-...+.+.+.+. ...+.++++|.
T Consensus 82 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS 143 (247)
T PRK12935 82 FGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISS 143 (247)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 34799999998743221 112344566766555555555432 23445555554
No 276
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=97.06 E-value=0.0036 Score=55.29 Aligned_cols=117 Identities=12% Similarity=0.148 Sum_probs=66.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------ 107 (279)
+.++|.|+||+|.+|..++..|+..|. +|+++|+++ ......++.... ..+..+. ..++ +.+++
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGAGA--HVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 456899999999999999999999997 999999875 222223333211 1122211 1112 22222
Q ss_pred -CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHH----HHHHHhCCCceEEEecCCC
Q 023671 108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~----~~I~~~~p~a~viv~TNPv 161 (279)
...|++|+++|..... ..+. ...+..|+.-...++ +.+.+. ..+.++++|...
T Consensus 86 ~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~iv~~ss~~ 149 (256)
T PRK06124 86 HGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQ-GYGRIIAITSIA 149 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhc-CCcEEEEEeech
Confidence 3469999999864321 1111 224556655444444 444333 345666666543
No 277
>PRK07904 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.0089 Score=53.25 Aligned_cols=115 Identities=14% Similarity=0.125 Sum_probs=66.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh----
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENAL---- 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal---- 107 (279)
+.++|.|+||+|.+|..++..|+.++ . .|+++++++. .....++.... ..++..+. ..+| ..+.+
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~--~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~ 83 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPA--RVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAF 83 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCC--eEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHH
Confidence 45689999999999999999998875 6 8999998752 22233343321 11222211 1111 11112
Q ss_pred --CCCCEEEEccCCCCCCCC---ch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671 108 --TGMDLVIIPAGVPRKPGM---TR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 108 --~~ADiVIitag~~~k~g~---~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T 158 (279)
.+.|++|+++|....... +. .+.+..|+. +.+.+.+.+.+... +.++++|
T Consensus 84 ~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~-~~iv~is 145 (253)
T PRK07904 84 AGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGF-GQIIAMS 145 (253)
T ss_pred hcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCC-ceEEEEe
Confidence 379999999887532211 11 123566653 34567777766554 4455554
No 278
>PRK06196 oxidoreductase; Provisional
Probab=97.06 E-value=0.0063 Score=55.97 Aligned_cols=110 Identities=21% Similarity=0.177 Sum_probs=64.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCH---Hhh-------hC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQL---ENA-------LT 108 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~---~ea-------l~ 108 (279)
.++|.|+||+|.+|..++..|+..|. +|++.+++.. .....++.... .+.. .-+|. .+. +.
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~--~Vv~~~R~~~~~~~~~~~l~~v~---~~~~--Dl~d~~~v~~~~~~~~~~~~ 98 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA--HVIVPARRPDVAREALAGIDGVE---VVML--DLADLESVRAFAERFLDSGR 98 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhhhCe---EEEc--cCCCHHHHHHHHHHHHhcCC
Confidence 45899999999999999999999998 9999998752 11112222110 0110 01121 111 24
Q ss_pred CCCEEEEccCCCCCCC-C---chhhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671 109 GMDLVIIPAGVPRKPG-M---TRDDLFNINAG----IVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 109 ~ADiVIitag~~~k~g-~---~r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T 158 (279)
+.|++|++||....+. . .-...+..|.. +.+.+.+.+.+.. .+.|+++|
T Consensus 99 ~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~-~~~iV~vS 155 (315)
T PRK06196 99 RIDILINNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGA-GARVVALS 155 (315)
T ss_pred CCCEEEECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcC-CCeEEEEC
Confidence 6899999998643221 1 11223445544 4666666666543 35566555
No 279
>PRK07074 short chain dehydrogenase; Provisional
Probab=97.06 E-value=0.0052 Score=54.27 Aligned_cols=34 Identities=32% Similarity=0.319 Sum_probs=30.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+++.|+||+|.+|..++..|+.+|. +|+++|++.
T Consensus 3 k~ilItGat~~iG~~la~~L~~~g~--~v~~~~r~~ 36 (257)
T PRK07074 3 RTALVTGAAGGIGQALARRFLAAGD--RVLALDIDA 36 (257)
T ss_pred CEEEEECCcchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999887 899999875
No 280
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=97.05 E-value=0.0012 Score=60.39 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=71.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--chhHHhhhhccc--CCCeEEEEeCCCCHHhh
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD--TGAVVRGFLGQPQLENA 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~----~~~-----~ev~L~D~~~--~~g~~~DL~~~~--~~~~v~~~~~~~d~~ea 106 (279)
+..||.|.|| |..|..++..|... |+- .+++++|.+- ..+. .|+.+.. ...+... ....++.|+
T Consensus 24 ~d~~iv~~GA-GsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r-~~l~~~~~~~a~~~~~-~~~~~L~e~ 100 (279)
T cd05312 24 SDQRILFLGA-GSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDR-KDLTPFKKPFARKDEE-KEGKSLLEV 100 (279)
T ss_pred hhcEEEEECc-CHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCC-CcchHHHHHHHhhcCc-ccCCCHHHH
Confidence 3469999999 99999999877654 652 5999999865 1111 1122111 0000000 012478999
Q ss_pred hC--CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671 107 LT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (279)
Q Consensus 107 l~--~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd 162 (279)
++ ++|++|=+.+.+ | -+.+++++.|.+++++.+|+-.|||..
T Consensus 101 i~~v~ptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~ 144 (279)
T cd05312 101 VKAVKPTVLIGLSGVG---G-----------AFTEEVVRAMAKSNERPIIFALSNPTS 144 (279)
T ss_pred HHhcCCCEEEEeCCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 99 999998876543 2 125688999999999999999999986
No 281
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.04 E-value=0.0045 Score=57.42 Aligned_cols=120 Identities=23% Similarity=0.246 Sum_probs=72.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhH---HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGV---TADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~---~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
|||+|+|+ |.||+-+++.|.+.|. .|.++-+.+. ... -+.+.+........... +.+ .+....+|+||++.
T Consensus 1 mkI~IlGa-GAvG~l~g~~L~~~g~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~-~~~-~~~~~~~Dlviv~v 75 (307)
T COG1893 1 MKILILGA-GAIGSLLGARLAKAGH--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVA-ATD-AEALGPADLVIVTV 75 (307)
T ss_pred CeEEEECC-cHHHHHHHHHHHhCCC--eEEEEecHHHHHHHHhCCeEEecCCCcccccccc-ccC-hhhcCCCCEEEEEe
Confidence 69999999 9999999999999993 6677665541 111 12222221101111111 222 46678999999986
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHHHHHHHHhCCCCCCCee-eecch
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLL-GVTML 189 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kVi-G~t~l 189 (279)
- ..+ ..+.++.+.... |+++|+..-|=++..- .+++ .+|+++|+ |+|..
T Consensus 76 K----a~q------------~~~al~~l~~~~~~~t~vl~lqNG~g~~e-----~l~~--~~~~~~il~G~~~~ 126 (307)
T COG1893 76 K----AYQ------------LEEALPSLAPLLGPNTVVLFLQNGLGHEE-----ELRK--ILPKETVLGGVTTH 126 (307)
T ss_pred c----ccc------------HHHHHHHhhhcCCCCcEEEEEeCCCcHHH-----HHHH--hCCcceEEEEEeee
Confidence 2 211 446666777665 6778888888887764 2333 35555554 46543
No 282
>PRK06128 oxidoreductase; Provisional
Probab=97.04 E-value=0.0092 Score=54.46 Aligned_cols=115 Identities=23% Similarity=0.254 Sum_probs=67.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc----hhHHhhhhcccCCCeEEEEe-CCCC---HHh-------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT----PGVTADISHMDTGAVVRGFL-GQPQ---LEN------- 105 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~----~g~~~DL~~~~~~~~v~~~~-~~~d---~~e------- 105 (279)
.++|.|+||+|.+|..++..|+..|. +|++.+.+.. ......+.... .++..+. .-.+ ..+
T Consensus 55 ~k~vlITGas~gIG~~~a~~l~~~G~--~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 55 GRKALITGADSGIGRATAIAFAREGA--DIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred CCEEEEecCCCcHHHHHHHHHHHcCC--EEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999997 8888776431 11122222211 1122111 1112 111
Q ss_pred hhCCCCEEEEccCCCC--CC--CCc---hhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671 106 ALTGMDLVIIPAGVPR--KP--GMT---RDDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 159 (279)
Q Consensus 106 al~~ADiVIitag~~~--k~--g~~---r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN 159 (279)
.+...|++|++||... .+ ..+ -...+..|+.....+++.+.+.- +.+.|+++|.
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS 192 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGS 192 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECC
Confidence 2346899999998642 11 112 23456677776666666666543 3456666554
No 283
>PRK05867 short chain dehydrogenase; Provisional
Probab=97.04 E-value=0.0076 Score=53.23 Aligned_cols=114 Identities=18% Similarity=0.214 Sum_probs=64.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHh-------hh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LEN-------AL 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~e-------al 107 (279)
.+++.|+||+|.+|..++..|+..|. +|++.+++. .+....++.+.. .++..+. ..+| ..+ .+
T Consensus 9 ~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 9 GKRALITGASTGIGKRVALAYVEAGA--QVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999998 999999875 222222333221 1222211 1112 111 13
Q ss_pred CCCCEEEEccCCCCCC---CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671 108 TGMDLVIIPAGVPRKP---GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 108 ~~ADiVIitag~~~k~---g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T 158 (279)
...|++|+++|..... ..+. ...+..|+. +.+.+.+.+.+....+.+++++
T Consensus 85 g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~s 145 (253)
T PRK05867 85 GGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTA 145 (253)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 4789999999864321 1111 123445544 4444445554443345566554
No 284
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=97.03 E-value=0.0091 Score=61.17 Aligned_cols=116 Identities=20% Similarity=0.218 Sum_probs=64.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhhC------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENALT------ 108 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal~------ 108 (279)
.++|.|+||+|.+|..++..|++.|. +|++.|++. ......++........+..+. .-+| ..++++
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~Ga--~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~ 491 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAEGA--HVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY 491 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999999999999997 999999876 222222332111001111111 1112 222232
Q ss_pred -CCCEEEEccCCCCCC---CCchh---hHHHhhH----HHHHHHHHHHHHhCCCceEEEec
Q 023671 109 -GMDLVIIPAGVPRKP---GMTRD---DLFNINA----GIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 109 -~ADiVIitag~~~k~---g~~r~---d~~~~N~----~i~~~i~~~I~~~~p~a~viv~T 158 (279)
+.|++|++||..... ..+.. ..+..|+ .+.+...+.+.+....+.++++|
T Consensus 492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iS 552 (676)
T TIGR02632 492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIA 552 (676)
T ss_pred CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 689999999964321 11111 1223333 23455666666554445555544
No 285
>PRK08264 short chain dehydrogenase; Validated
Probab=97.03 E-value=0.011 Score=51.44 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=63.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE----eCCCCHHhhh---CCCCEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF----LGQPQLENAL---TGMDLV 113 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~----~~~~d~~eal---~~ADiV 113 (279)
.++|.|+||+|.+|+.++..|+.+|. .+|++++++...... . ...+..+ ...+++.+.+ ...|+|
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~-~~V~~~~r~~~~~~~-----~--~~~~~~~~~D~~~~~~~~~~~~~~~~id~v 77 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA-AKVYAAARDPESVTD-----L--GPRVVPLQLDVTDPASVAAAAEAASDVTIL 77 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc-ccEEEEecChhhhhh-----c--CCceEEEEecCCCHHHHHHHHHhcCCCCEE
Confidence 45899999999999999999998884 478999886521110 1 0111111 1111222223 358999
Q ss_pred EEccCCCCCC----CCch---hhHHHhhHHHHHHHHHHHHHh---CCCceEEEecCCC
Q 023671 114 IIPAGVPRKP----GMTR---DDLFNINAGIVRTLCEGIAKC---CPNATVNLISNPV 161 (279)
Q Consensus 114 Iitag~~~k~----g~~r---~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TNPv 161 (279)
|+++|..... ..+. .+.+..|......+.+.+.+. ...+.++++|...
T Consensus 78 i~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~ 135 (238)
T PRK08264 78 VNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVL 135 (238)
T ss_pred EECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChh
Confidence 9999873211 1111 233455665555555554332 2345566666433
No 286
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.03 E-value=0.0025 Score=54.70 Aligned_cols=77 Identities=19% Similarity=0.225 Sum_probs=49.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEE--eCCCCHHhhhCCCCEEE
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGF--LGQPQLENALTGMDLVI 114 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~--~~~~d~~eal~~ADiVI 114 (279)
.+.+++.|+|++|.+|..++..|...+. +|.+++++.. .....++.+.. ...+... ....++.++++++|+||
T Consensus 26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~--~V~l~~R~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 26 LKGKTAVVLGGTGPVGQRAAVLLAREGA--RVVLVGRDLERAQKAADSLRARF-GEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhhc-CCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 3557999999889999999999988875 9999988652 22222232211 1222221 11123347789999988
Q ss_pred EccC
Q 023671 115 IPAG 118 (279)
Q Consensus 115 itag 118 (279)
.+..
T Consensus 103 ~at~ 106 (194)
T cd01078 103 AAGA 106 (194)
T ss_pred ECCC
Confidence 8754
No 287
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.03 E-value=0.0048 Score=56.09 Aligned_cols=97 Identities=14% Similarity=0.176 Sum_probs=65.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCC--CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPL--VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~--~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
++||++||+ |.+|..++..|...+. ..+|+..|+++.+. .++..... . .. +++..++...+|+||++.
T Consensus 1 ~~~IgfIG~-G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~--~~l~~~~g-~--~~---~~~~~~~~~~advv~Lav- 70 (266)
T COG0345 1 MMKIGFIGA-GNMGEAILSGLLKSGALPPEEIIVTNRSEEKR--AALAAEYG-V--VT---TTDNQEAVEEADVVFLAV- 70 (266)
T ss_pred CceEEEEcc-CHHHHHHHHHHHhcCCCCcceEEEeCCCHHHH--HHHHHHcC-C--cc---cCcHHHHHhhCCEEEEEe-
Confidence 469999999 9999999999998882 35888888765211 12332211 1 11 234467889999999987
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd 162 (279)
|| ..+.++++.++...++.+||-+.=.+.
T Consensus 71 ---KP------------q~~~~vl~~l~~~~~~~lvISiaAGv~ 99 (266)
T COG0345 71 ---KP------------QDLEEVLSKLKPLTKDKLVISIAAGVS 99 (266)
T ss_pred ---Ch------------HhHHHHHHHhhcccCCCEEEEEeCCCC
Confidence 44 236677777776445666766654543
No 288
>PRK06101 short chain dehydrogenase; Provisional
Probab=97.03 E-value=0.016 Score=50.92 Aligned_cols=114 Identities=21% Similarity=0.180 Sum_probs=64.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCC-eEEE-EeCCCCHHhhhC----CCCEEEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGA-VVRG-FLGQPQLENALT----GMDLVII 115 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~-~v~~-~~~~~d~~eal~----~ADiVIi 115 (279)
.++.|+||+|.+|..++..|+.+|. +|+++|+++... .++.+..... .+.. .+..++++++++ ..|.+|+
T Consensus 2 ~~vlItGas~giG~~la~~L~~~G~--~V~~~~r~~~~~--~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~ 77 (240)
T PRK06101 2 TAVLITGATSGIGKQLALDYAKQGW--QVIACGRNQSVL--DELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIF 77 (240)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhCCC--EEEEEECCHHHH--HHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEE
Confidence 4799999999999999999999997 899999875211 1111111011 1111 111112223333 2478888
Q ss_pred ccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671 116 PAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 159 (279)
Q Consensus 116 tag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN 159 (279)
.+|..... ..+. .+.+..|......+.+.+...- +...+++++.
T Consensus 78 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS 128 (240)
T PRK06101 78 NAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGS 128 (240)
T ss_pred cCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEec
Confidence 88743211 1122 2346677777777776666542 3345555543
No 289
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=97.02 E-value=0.0043 Score=54.59 Aligned_cols=112 Identities=17% Similarity=0.294 Sum_probs=64.1
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LTG 109 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~~ 109 (279)
++.|+|++|.+|..++..|++.|. +|++++.++ ......++.... ..+..+. .-+| +.++ +..
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~ 77 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGF--AVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGG 77 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 688999999999999999999997 899999865 222222333221 1222211 1112 1112 235
Q ss_pred CCEEEEccCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671 110 MDLVIIPAGVPRK-P--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 110 ADiVIitag~~~k-~--g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T 158 (279)
.|+||+++|.... + +.+.. ..+..|+. +++.+.+.+++....+.++++|
T Consensus 78 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~s 136 (254)
T TIGR02415 78 FDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAA 136 (254)
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7999999986421 1 22222 23445543 3445556666555445666554
No 290
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.02 E-value=0.0037 Score=55.37 Aligned_cols=71 Identities=23% Similarity=0.253 Sum_probs=46.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhh-hhcccCCCeEEEEeCC--CCHHhh-hCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTAD-ISHMDTGAVVRGFLGQ--PQLENA-LTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~D-L~~~~~~~~v~~~~~~--~d~~ea-l~~ADiVIita 117 (279)
|+++|+|+ |.+|+++|..|...|+ +|+++|.++.. +.. +.+.. ...+.....+ +-++++ +.++|++|.+.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~--~Vv~Id~d~~~--~~~~~~~~~-~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGH--NVVLIDRDEER--VEEFLADEL-DTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCC--ceEEEEcCHHH--HHHHhhhhc-ceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 68999999 9999999999999998 99999998721 111 11110 1111111111 123344 68999999986
Q ss_pred C
Q 023671 118 G 118 (279)
Q Consensus 118 g 118 (279)
|
T Consensus 75 ~ 75 (225)
T COG0569 75 G 75 (225)
T ss_pred C
Confidence 4
No 291
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=97.01 E-value=0.0037 Score=57.17 Aligned_cols=201 Identities=21% Similarity=0.224 Sum_probs=110.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC--CCCEEEEccCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT--GMDLVIIPAGV 119 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~--~ADiVIitag~ 119 (279)
|||.|+|++|++|+.+...|. .+. +|+-.|..+ +|+.+.. .+.+.++ .-|+||+||+.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~--~v~a~~~~~-----~Ditd~~------------~v~~~i~~~~PDvVIn~AAy 60 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEF--EVIATDRAE-----LDITDPD------------AVLEVIRETRPDVVINAAAY 60 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCc--eEEeccCcc-----ccccChH------------HHHHHHHhhCCCEEEECccc
Confidence 569999999999999998887 445 778777643 4444432 1334454 45999999986
Q ss_pred CCC--CCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec-CCC--Cch-HHHHHHHHHHhCCCCCCCeeeecchhHHH
Q 023671 120 PRK--PGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPV--NST-VPIAAEVFKKAGTYDPKKLLGVTMLDVVR 193 (279)
Q Consensus 120 ~~k--~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T-NPv--d~~-t~~~~~~~~~~~~~~~~kViG~t~lds~R 193 (279)
..- ...++..-+..|+.....+++...+.+ +++|.+| --| +.- .+ ++..---.|..++|-+.+-...
T Consensus 61 t~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~~~-----Y~E~D~~~P~nvYG~sKl~GE~ 133 (281)
T COG1091 61 TAVDKAESEPELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKGGP-----YKETDTPNPLNVYGRSKLAGEE 133 (281)
T ss_pred cccccccCCHHHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCCCC-----CCCCCCCCChhhhhHHHHHHHH
Confidence 532 233455567889999999999999865 3444443 222 000 00 0000002244566655432221
Q ss_pred HHHHHHHHcCCCCCCC---cceeecCCCCceee-eecccCCCCC-----------CCCHHHHHHHHHHHHhhHHH--HHh
Q 023671 194 ANTFVAEVLGLDPRDV---DVPVVGGHAGVTIL-PLLSQVKPPC-----------SFTQEETEYLTNRIQNGGTE--VVE 256 (279)
Q Consensus 194 ~~~~la~~l~v~~~~V---~~~ViGehg~~~~v-p~~S~~~v~~-----------~~~~~~~~~i~~~v~~~~~~--i~~ 256 (279)
+ .+.. .|..+ ..||+|++|. +.+ +.+..+.-+. +.+-.++.+...++-....+ ++-
T Consensus 134 ~----v~~~--~~~~~I~Rtswv~g~~g~-nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~~~~~yH 206 (281)
T COG1091 134 A----VRAA--GPRHLILRTSWVYGEYGN-NFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEKEGGVYH 206 (281)
T ss_pred H----HHHh--CCCEEEEEeeeeecCCCC-CHHHHHHHHhhcCCceEEECCeeeCCccHHHHHHHHHHHHhccccCcEEE
Confidence 1 1222 23333 4889999996 433 4444444321 23344443333222221211 222
Q ss_pred hhcCCC-cchHHHHHHHHHHHh
Q 023671 257 AKAGAG-SATLSMRLNLRMHAS 277 (279)
Q Consensus 257 ~k~g~g-s~~~s~A~a~~~~~~ 277 (279)
+- +.| +++|-.|..+.+...
T Consensus 207 ~~-~~g~~Swydfa~~I~~~~~ 227 (281)
T COG1091 207 LV-NSGECSWYEFAKAIFEEAG 227 (281)
T ss_pred Ee-CCCcccHHHHHHHHHHHhC
Confidence 11 333 468888988887653
No 292
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=97.01 E-value=0.0053 Score=55.37 Aligned_cols=90 Identities=14% Similarity=0.196 Sum_probs=57.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCC--cEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLV--SVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~--~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.|||+|||+ |.+|++++..|...+.. .+++.+|.++.. + .... ..+..+.++++|+||++.
T Consensus 3 ~mkI~iIG~-G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~-------~~~~---~~~~~~~~~~~D~Vilav- 65 (260)
T PTZ00431 3 NIRVGFIGL-GKMGSALAYGIENSNIIGKENIYYHTPSKKN-----T-------PFVY---LQSNEELAKTCDIIVLAV- 65 (260)
T ss_pred CCEEEEECc-cHHHHHHHHHHHhCCCCCcceEEEECCChhc-----C-------CeEE---eCChHHHHHhCCEEEEEe-
Confidence 369999998 99999999999887743 358888875421 0 0111 123456788999999985
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd 162 (279)
+| ..++++++.+..+-++..+|...+-+.
T Consensus 66 ---kp------------~~~~~vl~~i~~~l~~~~iIS~~aGi~ 94 (260)
T PTZ00431 66 ---KP------------DLAGKVLLEIKPYLGSKLLISICGGLN 94 (260)
T ss_pred ---CH------------HHHHHHHHHHHhhccCCEEEEEeCCcc
Confidence 22 224455555554433345566666665
No 293
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.01 E-value=0.0055 Score=56.42 Aligned_cols=64 Identities=16% Similarity=0.232 Sum_probs=44.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCC---CCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTG---MDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~---ADiVIita 117 (279)
|||+|||. |.+|+.++..|+..++ +|.++|+++.. ..++.+.. +.. ..++.+..+. +|+||++.
T Consensus 1 m~Ig~IGl-G~MG~~mA~~L~~~g~--~v~v~dr~~~~--~~~~~~~g----~~~---~~~~~e~~~~~~~~dvvi~~v 67 (301)
T PRK09599 1 MQLGMIGL-GRMGGNMARRLLRGGH--EVVGYDRNPEA--VEALAEEG----ATG---ADSLEELVAKLPAPRVVWLMV 67 (301)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHCCC--eEEEEECCHHH--HHHHHHCC----Cee---cCCHHHHHhhcCCCCEEEEEe
Confidence 48999998 9999999999999987 99999997521 12222211 111 1244454554 69999975
No 294
>PLN02712 arogenate dehydrogenase
Probab=97.00 E-value=0.0053 Score=62.75 Aligned_cols=84 Identities=18% Similarity=0.161 Sum_probs=54.7
Q ss_pred Ccccchhhhhhhhcc---------CCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCC
Q 023671 21 PNLQNSCLRQAKCRA---------KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTG 91 (279)
Q Consensus 21 ~~~~~~~~~~~~~~~---------~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~ 91 (279)
|.|+.||=.+...+- ++..+++||+|||. |.+|..++..|...|+ +|..+|.+.....+.++ .
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kIgIIG~-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~A~~~---G-- 94 (667)
T PLN02712 23 PRLSLSIKSQSATATDKQPLPNSNPDNTTQLKIAIIGF-GNYGQFLAKTLISQGH--TVLAHSRSDHSLAARSL---G-- 94 (667)
T ss_pred chhhhhhcccccccCCCCCCCCCCCccCCCCEEEEEcc-CHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHc---C--
Confidence 445555555444332 34455689999998 9999999999998886 89999986422111111 1
Q ss_pred CeEEEEeCCCCHHhhh-CCCCEEEEcc
Q 023671 92 AVVRGFLGQPQLENAL-TGMDLVIIPA 117 (279)
Q Consensus 92 ~~v~~~~~~~d~~eal-~~ADiVIita 117 (279)
+.. .++..+.+ ++||+||++.
T Consensus 95 --v~~---~~d~~e~~~~~aDvViLav 116 (667)
T PLN02712 95 --VSF---FLDPHDLCERHPDVILLCT 116 (667)
T ss_pred --CEE---eCCHHHHhhcCCCEEEEcC
Confidence 121 12445534 5799999986
No 295
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.00 E-value=0.0025 Score=55.86 Aligned_cols=95 Identities=14% Similarity=0.168 Sum_probs=60.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEccCCCCC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIPAGVPRK 122 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIitag~~~k 122 (279)
|+|+||+|.+|++++..|+..++ +|..+=++........+.+... .-+.. +...+.+.++++|+|.||++.+...
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~--~V~~l~R~~~~~~~~~l~~~g~-~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~- 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF--SVRALVRDPSSDRAQQLQALGA-EVVEADYDDPESLVAALKGVDAVFSVTPPSH- 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG--CEEEEESSSHHHHHHHHHHTTT-EEEES-TT-HHHHHHHHTTCSEEEEESSCSC-
T ss_pred CEEECCccHHHHHHHHHHHhCCC--CcEEEEeccchhhhhhhhcccc-eEeecccCCHHHHHHHHcCCceEEeecCcch-
Confidence 78999999999999999999776 7888776652223333443321 11111 1111346678999999999875432
Q ss_pred CCCchhhHHHhhHHHHHHHHHHHHHhCCC
Q 023671 123 PGMTRDDLFNINAGIVRTLCEGIAKCCPN 151 (279)
Q Consensus 123 ~g~~r~d~~~~N~~i~~~i~~~I~~~~p~ 151 (279)
. .-.+..+.++++.++.+-+
T Consensus 77 --~-------~~~~~~~~li~Aa~~agVk 96 (233)
T PF05368_consen 77 --P-------SELEQQKNLIDAAKAAGVK 96 (233)
T ss_dssp --C-------CHHHHHHHHHHHHHHHT-S
T ss_pred --h-------hhhhhhhhHHHhhhccccc
Confidence 1 1234556778888877644
No 296
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.00 E-value=0.0055 Score=56.81 Aligned_cols=101 Identities=19% Similarity=0.239 Sum_probs=64.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit 116 (279)
.+.+||+|+|+ |.+|..++..|...+ ..+|.++|++.. ...+..+. ..+.. .+++++++.++|+||.+
T Consensus 176 l~~~~V~ViGa-G~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 176 LKGKKVLVIGA-GEMGELAAKHLAAKG-VAEITIANRTYERAEELAKELG-----GNAVP---LDELLELLNEADVVISA 245 (311)
T ss_pred ccCCEEEEECc-HHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHcC-----CeEEe---HHHHHHHHhcCCEEEEC
Confidence 45679999999 999999998887755 348999998752 22222221 11111 12466788999999999
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHH-HHh-CCCceEEEecCCCCchH
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVNSTV 165 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I-~~~-~p~a~viv~TNPvd~~t 165 (279)
.+.+.. .++.+.+ +.. .+..+++-+++|-|+=.
T Consensus 246 t~~~~~----------------~~~~~~~~~~~~~~~~~viDlavPrdi~~ 280 (311)
T cd05213 246 TGAPHY----------------AKIVERAMKKRSGKPRLIVDLAVPRDIEP 280 (311)
T ss_pred CCCCch----------------HHHHHHHHhhCCCCCeEEEEeCCCCCCch
Confidence 865521 1222222 212 23567888899998643
No 297
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.02 Score=50.72 Aligned_cols=117 Identities=22% Similarity=0.280 Sum_probs=65.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------ 107 (279)
+.+++.|+||+|.+|..++..|+..|. +|+++|+++ ......++.......++..+. .-+| +.+.+
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~--~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA--AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEA 83 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999997 899999876 222233333211111222211 1112 22222
Q ss_pred -CCCCEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 108 -TGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 108 -~~ADiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
...|++|+++|..... ..+.. ..+..|+. +.+...+.+.+.. .+.|+++|.
T Consensus 84 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS 145 (260)
T PRK07063 84 FGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERG-RGSIVNIAS 145 (260)
T ss_pred hCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhC-CeEEEEECC
Confidence 3689999999864211 11111 23444544 3455555554433 355666554
No 298
>PRK08226 short chain dehydrogenase; Provisional
Probab=97.00 E-value=0.0067 Score=53.77 Aligned_cols=36 Identities=31% Similarity=0.387 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+++.|+||+|.+|+.++..|+.+|. +|+++++++
T Consensus 5 ~~~~~lItG~s~giG~~la~~l~~~G~--~Vv~~~r~~ 40 (263)
T PRK08226 5 TGKTALITGALQGIGEGIARVFARHGA--NLILLDISP 40 (263)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEecCCH
Confidence 346899999999999999999999998 899999875
No 299
>PLN02780 ketoreductase/ oxidoreductase
Probab=96.99 E-value=0.01 Score=55.13 Aligned_cols=116 Identities=16% Similarity=0.226 Sum_probs=65.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEE--eCCCCH-------HhhhC-
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF--LGQPQL-------ENALT- 108 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~--~~~~d~-------~eal~- 108 (279)
.+.+.|+||+|.+|..+|..|+.+|. +|+++|+++ .+....++........+..+ .-+++. .+.+.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~--~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~ 130 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGL--NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEG 130 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcC
Confidence 35899999999999999999999998 899999986 23333444332111122211 111111 12233
Q ss_pred -CCCEEEEccCCCCC---C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 109 -GMDLVIIPAGVPRK---P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 109 -~ADiVIitag~~~k---~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+.|++|+.||.... + ..+. ...+..|+. +.+.+.+.+.+.. .+.|+++|.
T Consensus 131 ~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~-~g~IV~iSS 193 (320)
T PLN02780 131 LDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRK-KGAIINIGS 193 (320)
T ss_pred CCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC-CcEEEEEec
Confidence 45599999987421 1 1121 234555654 4444555554433 455566553
No 300
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.99 E-value=0.004 Score=55.88 Aligned_cols=68 Identities=18% Similarity=0.228 Sum_probs=45.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
|||+|||+ |.+|+.++..|...++ ..++.++|+++.. ...+.+.. ..+... ++..+.++++|+||++.
T Consensus 1 m~IgiIG~-G~mG~aia~~L~~~g~~~~~i~v~~r~~~~--~~~l~~~~--~~~~~~---~~~~~~~~~aDvVilav 69 (258)
T PRK06476 1 MKIGFIGT-GAITEAMVTGLLTSPADVSEIIVSPRNAQI--AARLAERF--PKVRIA---KDNQAVVDRSDVVFLAV 69 (258)
T ss_pred CeEEEECc-CHHHHHHHHHHHhCCCChheEEEECCCHHH--HHHHHHHc--CCceEe---CCHHHHHHhCCEEEEEe
Confidence 48999998 9999999999988774 3456778775421 22222211 112221 34567788999999986
No 301
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=96.99 E-value=0.0031 Score=56.93 Aligned_cols=108 Identities=21% Similarity=0.292 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhC----CCC-----cEEEEEeCCC--chhHHhhhhccc-----CCCeEEEEeCCCCH
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKIN----PLV-----SVLHLYDVVN--TPGVTADISHMD-----TGAVVRGFLGQPQL 103 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~----~~~-----~ev~L~D~~~--~~g~~~DL~~~~-----~~~~v~~~~~~~d~ 103 (279)
+..||.+.|| |..|..++.+|... |+- ++++++|.+- ..+. .|+.+.. ....... ..++
T Consensus 24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r-~~l~~~~~~~a~~~~~~~~---~~~L 98 (255)
T PF03949_consen 24 SDQRIVFFGA-GSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR-EDLNPHKKPFARKTNPEKD---WGSL 98 (255)
T ss_dssp GG-EEEEEB--SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT-SSHSHHHHHHHBSSSTTT-----SSH
T ss_pred HHcEEEEeCC-ChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC-ccCChhhhhhhccCccccc---ccCH
Confidence 4569999999 99999999877654 764 7999999875 1111 2222210 0011110 1378
Q ss_pred HhhhCCC--CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHH
Q 023671 104 ENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVP 166 (279)
Q Consensus 104 ~eal~~A--DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~ 166 (279)
.|+++++ |++|=+.+.+ | -+.+++++.|.+++++.+|+-.|||.. -.++
T Consensus 99 ~eav~~~kPtvLIG~S~~~---g-----------~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~p 151 (255)
T PF03949_consen 99 LEAVKGAKPTVLIGLSGQG---G-----------AFTEEVVRAMAKHNERPIIFPLSNPTPKAECTP 151 (255)
T ss_dssp HHHHHCH--SEEEECSSST---T-----------SS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-H
T ss_pred HHHHHhcCCCEEEEecCCC---C-----------cCCHHHHHHHhccCCCCEEEECCCCCCcccCCH
Confidence 9999999 9999887644 2 235789999999999999999999987 6654
No 302
>PRK06398 aldose dehydrogenase; Validated
Probab=96.98 E-value=0.0065 Score=54.11 Aligned_cols=112 Identities=15% Similarity=0.191 Sum_probs=62.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhH-----HhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGV-----TADISHMDTGAVVRGFLGQPQLENALTGMDLVI 114 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~-----~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVI 114 (279)
+.+++.|+||+|.+|..++..|+..|. +|+++|+++.... ..|+.+... +... .....+.+...|++|
T Consensus 5 ~gk~vlItGas~gIG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~D~~~~~~---i~~~--~~~~~~~~~~id~li 77 (258)
T PRK06398 5 KDKVAIVTGGSQGIGKAVVNRLKEEGS--NVINFDIKEPSYNDVDYFKVDVSNKEQ---VIKG--IDYVISKYGRIDILV 77 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCccccCceEEEEccCCCHHH---HHHH--HHHHHHHcCCCCEEE
Confidence 346899999999999999999999998 9999998652111 112111100 0000 000112234689999
Q ss_pred EccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 115 IPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 115 itag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+++|..... ..+.. ..+..|+. +.+.+.+.+.+. ..+.|+++|.
T Consensus 78 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~g~iv~isS 131 (258)
T PRK06398 78 NNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQ-DKGVIINIAS 131 (258)
T ss_pred ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCeEEEEeCc
Confidence 999874321 11222 23455654 444455555443 3455666553
No 303
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.98 E-value=0.019 Score=53.61 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=65.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------- 106 (279)
+.++|.|+||+|.+|..++..|+.+|. +|+++++++ ......++.... .++..+. .-+| .+++
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~--~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~ 82 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA--KVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEE 82 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999997 899999875 222223333211 1222111 1122 2122
Q ss_pred hCCCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671 107 LTGMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+...|++|+++|..... ..+.. ..+..| +...+.+.+.+.+.. .+.|++++.
T Consensus 83 ~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~-~g~iV~isS 144 (334)
T PRK07109 83 LGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRD-RGAIIQVGS 144 (334)
T ss_pred CCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CcEEEEeCC
Confidence 23689999999864211 11111 223333 445566666666543 355665543
No 304
>PRK12743 oxidoreductase; Provisional
Probab=96.97 E-value=0.044 Score=48.49 Aligned_cols=115 Identities=13% Similarity=0.153 Sum_probs=62.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-c--hhHHhhhhcccCCCeEEEEe-CCCCH---Hh-------h
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-T--PGVTADISHMDTGAVVRGFL-GQPQL---EN-------A 106 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~--~g~~~DL~~~~~~~~v~~~~-~~~d~---~e-------a 106 (279)
+++|.|+||+|.+|..++..|+..|. +|++.+... . .....++.... ..+..+. ..++. ++ .
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~--~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 77 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGF--DIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQR 77 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHH
Confidence 34899999999999999999999997 888876533 1 12222332211 1222211 11221 11 1
Q ss_pred hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHH----HHHHhCCCceEEEecC
Q 023671 107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCE----GIAKCCPNATVNLISN 159 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~----~I~~~~p~a~viv~TN 159 (279)
+...|++|+++|..... ..+. ...+..|+.....+.+ .+.+....+.++++|.
T Consensus 78 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS 140 (256)
T PRK12743 78 LGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITS 140 (256)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEee
Confidence 23579999999864321 1111 2334556554444444 4433333456666654
No 305
>PRK06523 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.0022 Score=56.82 Aligned_cols=35 Identities=14% Similarity=0.126 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.++|.|+||+|.+|+.++..|+..|. +|+++++++
T Consensus 9 ~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~r~~ 43 (260)
T PRK06523 9 GKRALVTGGTKGIGAATVARLLEAGA--RVVTTARSR 43 (260)
T ss_pred CCEEEEECCCCchhHHHHHHHHHCCC--EEEEEeCCh
Confidence 46899999999999999999999998 899999865
No 306
>PRK07060 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.0047 Score=53.89 Aligned_cols=116 Identities=18% Similarity=0.200 Sum_probs=64.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhh---CCCCEEEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENAL---TGMDLVII 115 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal---~~ADiVIi 115 (279)
+.+++.|+||+|.+|.+++..|+..|+ +|++++++... ..++........+.. .....++.+.+ ...|+||+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~--~V~~~~r~~~~--~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~ 83 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA--RVVAAARNAAA--LDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVN 83 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEE
Confidence 346899999999999999999999997 89999986521 111211100001111 11011122223 35799999
Q ss_pred ccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh----CCCceEEEecC
Q 023671 116 PAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC----CPNATVNLISN 159 (279)
Q Consensus 116 tag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~----~p~a~viv~TN 159 (279)
++|..... ..+. ...+..|+.-...+++.+.+. +..+.++++|.
T Consensus 84 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS 137 (245)
T PRK07060 84 CAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSS 137 (245)
T ss_pred CCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEcc
Confidence 99864321 1111 223455666555555555443 22355666553
No 307
>PRK07577 short chain dehydrogenase; Provisional
Probab=96.97 E-value=0.0065 Score=52.71 Aligned_cols=35 Identities=20% Similarity=0.134 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.++|.|+||+|.+|..++..|+..|. +|++++++.
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~--~v~~~~r~~ 37 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH--QVIGIARSA 37 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 35899999999999999999999997 999999865
No 308
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.97 E-value=0.0061 Score=54.05 Aligned_cols=99 Identities=22% Similarity=0.306 Sum_probs=63.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCc--EEEEEeCCC----chh-----HHhhhhcccCCCeEEEEeCCCCHHhhh
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVS--VLHLYDVVN----TPG-----VTADISHMDTGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~--ev~L~D~~~----~~g-----~~~DL~~~~~~~~v~~~~~~~d~~eal 107 (279)
.+.+||.|+|| |..|..++..|...|. + +|.++|++. .+. ...++.+...... . ..++.+++
T Consensus 23 l~~~rvlvlGA-GgAg~aiA~~L~~~G~-~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~--~~~l~~~l 95 (226)
T cd05311 23 IEEVKIVINGA-GAAGIAIARLLLAAGA-KPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---T--GGTLKEAL 95 (226)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHcCc-CcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---c--cCCHHHHH
Confidence 44569999999 9999999999988875 4 899999983 111 1122222110011 1 12566889
Q ss_pred CCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671 108 TGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd 162 (279)
+++|++|.+.+ +|+- + .+..+.+ +++.+++..+||..
T Consensus 96 ~~~dvlIgaT~----~G~~-------~----~~~l~~m---~~~~ivf~lsnP~~ 132 (226)
T cd05311 96 KGADVFIGVSR----PGVV-------K----KEMIKKM---AKDPIVFALANPVP 132 (226)
T ss_pred hcCCEEEeCCC----CCCC-------C----HHHHHhh---CCCCEEEEeCCCCC
Confidence 99999999865 2331 1 2333333 36778778899974
No 309
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=96.96 E-value=0.0013 Score=59.22 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=79.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCC---------CcEEEEEeCCCc--hhHHhhhhcc--c--CCCeEEEEeCCCCHH
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPL---------VSVLHLYDVVNT--PGVTADISHM--D--TGAVVRGFLGQPQLE 104 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~---------~~ev~L~D~~~~--~g~~~DL~~~--~--~~~~v~~~~~~~d~~ 104 (279)
+..||.+.|| |..|..++..|...+. -.+++++|..-+ .+. .|+... . .+.+-. ....++.
T Consensus 24 ~d~riv~~GA-GsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r-~~l~~~~~~~~~~~~~~--~~~~~L~ 99 (254)
T cd00762 24 SEHKVLFNGA-GAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNR-KETCPNEYHLARFANPE--RESGDLE 99 (254)
T ss_pred hhcEEEEECc-CHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCC-CccCHHHHHHHHHcCcc--cccCCHH
Confidence 3469999999 9999999987765432 138999998641 111 111110 0 000101 1124789
Q ss_pred hhhC--CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHHhCCCCC
Q 023671 105 NALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTYDP 180 (279)
Q Consensus 105 eal~--~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~~~~~~~ 180 (279)
++++ ++|++|=+.+.+ | -+.+++++.|.+++++.+|+-.|||.. -.++ +-.++.+. -
T Consensus 100 eav~~~kptvlIG~S~~~---g-----------~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tp---e~a~~~t~--G 160 (254)
T cd00762 100 DAVEAAKPDFLIGVSRVG---G-----------AFTPEVIRAXAEINERPVIFALSNPTSKAECTA---EEAYTATE--G 160 (254)
T ss_pred HHHHhhCCCEEEEeCCCC---C-----------CCCHHHHHHHhhcCCCCEEEECCCcCCccccCH---HHHHhhcC--C
Confidence 9999 999998876544 2 235688999999999999999999986 4443 22333221 2
Q ss_pred CCeeeec
Q 023671 181 KKLLGVT 187 (279)
Q Consensus 181 ~kViG~t 187 (279)
+.+|++.
T Consensus 161 ~ai~AtG 167 (254)
T cd00762 161 RAIFASG 167 (254)
T ss_pred CEEEEEC
Confidence 4677774
No 310
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.96 E-value=0.0096 Score=52.66 Aligned_cols=115 Identities=13% Similarity=0.158 Sum_probs=63.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhh-------hCCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMD 111 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~ea-------l~~AD 111 (279)
+.+++.|+||+|.+|..++..|+..|. +|++.+.+.. ....++.+... ..+.. .....++.++ +...|
T Consensus 6 ~~k~~lItGas~gIG~~~a~~l~~~G~--~v~~~~~~~~-~~~~~l~~~~~-~~~~~Dl~~~~~~~~~~~~~~~~~~~id 81 (255)
T PRK06463 6 KGKVALITGGTRGIGRAIAEAFLREGA--KVAVLYNSAE-NEAKELREKGV-FTIKCDVGNRDQVKKSKEVVEKEFGRVD 81 (255)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCcH-HHHHHHHhCCC-eEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 346899999999999999999999997 8888765431 11122221110 00110 0001111122 23679
Q ss_pred EEEEccCCCCCC---CCchh---hHHHhhHHH----HHHHHHHHHHhCCCceEEEecC
Q 023671 112 LVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 112 iVIitag~~~k~---g~~r~---d~~~~N~~i----~~~i~~~I~~~~p~a~viv~TN 159 (279)
++|+++|..... ..+.. ..+..|+.- .+.+.+.+.+.. .+.|+++|.
T Consensus 82 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~-~g~iv~isS 138 (255)
T PRK06463 82 VLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSK-NGAIVNIAS 138 (255)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CcEEEEEcC
Confidence 999999874321 11222 234455544 566677666433 455665553
No 311
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.95 E-value=0.012 Score=51.80 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.+.++|.|+||+|.+|++++..|+..|. +|++.++++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~--~Vi~~~r~~ 43 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA--KVVLASRRV 43 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3456899999999999999999999987 899999875
No 312
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.94 E-value=0.0098 Score=52.49 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=64.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------hC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA-------LT 108 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea-------l~ 108 (279)
+++.|+||+|.+|.+++..|+..|. .|++.|++. ......++.... ..+..+. ..+| ..+. +.
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~--~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 77 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA--NVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFG 77 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4789999999999999999999998 899999875 222222333211 1222211 1112 1111 24
Q ss_pred CCCEEEEccCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671 109 GMDLVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 109 ~ADiVIitag~~~k-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T 158 (279)
..|++|+++|.... + ..+. ...+..|+. +.+.+.+.+.+..+.+.++++|
T Consensus 78 ~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~is 137 (252)
T PRK07677 78 RIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMV 137 (252)
T ss_pred CccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEc
Confidence 67999999985321 1 2222 223455544 4444444444434456677665
No 313
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=96.94 E-value=0.0058 Score=54.34 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.+++.|+||+|.+|..++..|+.+|. +|++.|+++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~--~v~~~~~~~ 43 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA--NVVNADIHG 43 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 45899999999999999999999998 999999876
No 314
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.93 E-value=0.019 Score=51.12 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=64.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------h
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------L 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l 107 (279)
.+++.|+||+|.+|.+++..|+..|. +|++.|.++ ......++.... .++..+. ..++. +++ +
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~G~--~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKAGA--TIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEV 85 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 45899999999999999999999997 899998765 222222332211 1222211 11121 111 2
Q ss_pred CCCCEEEEccCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecCCC
Q 023671 108 TGMDLVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 108 ~~ADiVIitag~~~k-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TNPv 161 (279)
...|++|+++|.... + ..+. ...+..|+. +.+.+.+.+.+ ...+.|++++...
T Consensus 86 ~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~~g~iv~isS~~ 148 (265)
T PRK07097 86 GVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIK-KGHGKIINICSMM 148 (265)
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHh-cCCcEEEEEcCcc
Confidence 457999999986421 1 1111 223344544 34445555544 3356666666543
No 315
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.93 E-value=0.0053 Score=56.63 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=52.3
Q ss_pred hhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhh
Q 023671 29 RQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENAL 107 (279)
Q Consensus 29 ~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal 107 (279)
..++..........||.|+|+ |.+|..++..|...|. +|.++|++.. ...+.++ . ... . ...++.+.+
T Consensus 140 ~~a~~~~~~~l~g~kvlViG~-G~iG~~~a~~L~~~Ga--~V~v~~r~~~~~~~~~~~---G--~~~--~-~~~~l~~~l 208 (296)
T PRK08306 140 MMAIEHTPITIHGSNVLVLGF-GRTGMTLARTLKALGA--NVTVGARKSAHLARITEM---G--LSP--F-HLSELAEEV 208 (296)
T ss_pred HHHHHhCCCCCCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHc---C--Cee--e-cHHHHHHHh
Confidence 333333333445679999998 9999999999998886 9999999752 2222211 1 111 1 112456788
Q ss_pred CCCCEEEEcc
Q 023671 108 TGMDLVIIPA 117 (279)
Q Consensus 108 ~~ADiVIita 117 (279)
+++|+||.|.
T Consensus 209 ~~aDiVI~t~ 218 (296)
T PRK08306 209 GKIDIIFNTI 218 (296)
T ss_pred CCCCEEEECC
Confidence 9999999986
No 316
>PLN02503 fatty acyl-CoA reductase 2
Probab=96.93 E-value=0.011 Score=59.83 Aligned_cols=119 Identities=15% Similarity=0.066 Sum_probs=72.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc----hhHH-hhhhcc---------c-------CCCeEEE
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT----PGVT-ADISHM---------D-------TGAVVRG 96 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~----~g~~-~DL~~~---------~-------~~~~v~~ 96 (279)
-+.++|.|+||+||+|..++..|+... -+.+|+++.+... .... .++.+. . ...++..
T Consensus 117 ~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~ 196 (605)
T PLN02503 117 LRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVP 196 (605)
T ss_pred hcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEE
Confidence 356899999999999999999888754 3568888877541 1111 111110 0 0123333
Q ss_pred EeCC-C---------CHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEec
Q 023671 97 FLGQ-P---------QLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLIS 158 (279)
Q Consensus 97 ~~~~-~---------d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~T 158 (279)
+.+. . +++...++.|+||++|+... ...+....+..|+...+++++.+.+.. .+.++.+.|
T Consensus 197 v~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~-f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vST 268 (605)
T PLN02503 197 VVGNVCESNLGLEPDLADEIAKEVDVIINSAANTT-FDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVST 268 (605)
T ss_pred EEeeCCCcccCCCHHHHHHHHhcCCEEEECccccc-cccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccC
Confidence 2211 1 22233467999999997643 233445667889999999999887653 233443333
No 317
>PRK07574 formate dehydrogenase; Provisional
Probab=96.93 E-value=0.0072 Score=57.85 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++|+|||. |.+|+.+|..|..-|. +|..+|+...... ..... .+.. ..++++.++.||+|+++..
T Consensus 190 L~gktVGIvG~-G~IG~~vA~~l~~fG~--~V~~~dr~~~~~~---~~~~~---g~~~---~~~l~ell~~aDvV~l~lP 257 (385)
T PRK07574 190 LEGMTVGIVGA-GRIGLAVLRRLKPFDV--KLHYTDRHRLPEE---VEQEL---GLTY---HVSFDSLVSVCDVVTIHCP 257 (385)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCCchh---hHhhc---Ccee---cCCHHHHhhcCCEEEEcCC
Confidence 44579999999 9999999999988887 9999998652111 11110 1111 1257888999999999864
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.. ..+-.++. .+.+....|.+++|+++
T Consensus 258 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a 284 (385)
T PRK07574 258 LH-----------PETEHLFD--ADVLSRMKRGSYLVNTA 284 (385)
T ss_pred CC-----------HHHHHHhC--HHHHhcCCCCcEEEECC
Confidence 22 11111121 23334445788999875
No 318
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.92 E-value=0.012 Score=52.22 Aligned_cols=117 Identities=16% Similarity=0.172 Sum_probs=66.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCCHH---hh-----
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQLE---NA----- 106 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d~~---ea----- 106 (279)
.+.+++.|+||+|.+|..++..|+..|. .+++...++. .....++.+.. .++..+. ..+|.+ +.
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~--~vvi~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~ 80 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKA--KVVINYRSDEEEANDVAEEIKKAG--GEAIAVKGDVTVESDVVNLIQTAV 80 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEecCCCHHHHHHHHHHHH
Confidence 3456899999999999999999999997 7888766441 22222332211 1222111 112221 11
Q ss_pred --hCCCCEEEEccCCCCCC---CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 107 --LTGMDLVIIPAGVPRKP---GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 107 --l~~ADiVIitag~~~k~---g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+...|++|+.+|..... ..+.. ..+..|+. +.+.+.+.+.+....+.++++|.
T Consensus 81 ~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS 145 (261)
T PRK08936 81 KEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSS 145 (261)
T ss_pred HHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcc
Confidence 23579999999864321 11122 23455643 34556666666555566666553
No 319
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.92 E-value=0.0087 Score=51.96 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=64.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEe-CCCC---HHhh------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFL-GQPQ---LENA------ 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------ 106 (279)
+.++|.|+|++|++|+.++..|+..|. +|++...+.. .....++.... ..+..+. .-.+ +.++
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~G~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 79 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQGA--NVVINYASSEAGAEALVAEIGALG--GKALAVQGDVSDAESVERAVDEAKA 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999999987 8877766542 11122222111 1222111 1112 1111
Q ss_pred -hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC---CCceEEEecC
Q 023671 107 -LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLISN 159 (279)
Q Consensus 107 -l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~a~viv~TN 159 (279)
+.+.|.||+++|..... ..+. ...+..|+.....+.+.+.+.. +...++++|.
T Consensus 80 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss 142 (248)
T PRK05557 80 EFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISS 142 (248)
T ss_pred HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 23689999999864321 1111 1234566666666666665442 2234555553
No 320
>PRK07062 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.027 Score=49.96 Aligned_cols=117 Identities=16% Similarity=0.193 Sum_probs=66.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCHH----------hh
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQLE----------NA 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~~----------ea 106 (279)
+.+.+.|+||+|.+|..++..|+..|. +|++.++++ ......++.......++..+. ..+|.+ +.
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA--SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEAR 84 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence 345799999999999999999999998 899999876 222223333221111222211 112221 11
Q ss_pred hCCCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671 107 LTGMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+...|++|++||..... ..+.. ..+..| +...+.+.+.+++.. .+.|+++|.
T Consensus 85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~isS 146 (265)
T PRK07062 85 FGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASA-AASIVCVNS 146 (265)
T ss_pred cCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccC-CcEEEEecc
Confidence 34679999999864321 11111 122333 345666666666543 355666553
No 321
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.92 E-value=0.014 Score=51.59 Aligned_cols=103 Identities=13% Similarity=0.123 Sum_probs=59.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------- 107 (279)
+.+++.|+||+|.+|..++..|+.+|. ++++.+.++. .....++.... .++..+. ..++ +.+.+
T Consensus 6 ~~~~ilItGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 6 KDKVVIVTGGASGIGAAISLRLAEEGA--IPVIFGRSAPDDEFAEELRALQ--PRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC--cEEEEcCChhhHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999999997 8899988762 22223332221 1222211 1112 22223
Q ss_pred CCCCEEEEccCCCCCCCC--c---hhhHHHhhHHHHHHHHHHHH
Q 023671 108 TGMDLVIIPAGVPRKPGM--T---RDDLFNINAGIVRTLCEGIA 146 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~--~---r~d~~~~N~~i~~~i~~~I~ 146 (279)
...|+||+++|....... . -.+.+..|+.....+.+...
T Consensus 82 ~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~ 125 (258)
T PRK08628 82 GRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCL 125 (258)
T ss_pred CCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHH
Confidence 257999999986432221 1 12345566655445544443
No 322
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.91 E-value=0.012 Score=52.27 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+++.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 39 (262)
T TIGR03325 4 KGEVVLVTGGASGLGRAIVDRFVAEGA--RVAVLDKSA 39 (262)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999999998 999999865
No 323
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.91 E-value=0.012 Score=51.98 Aligned_cols=115 Identities=17% Similarity=0.185 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---Hh-------hh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---EN-------AL 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~e-------al 107 (279)
.++|.|+||+|.+|.+++..|...|. ++++.|.+. ......++.+.. .++..+. .-++. .+ .+
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~G~--~vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 86 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATAGA--SVVVSDINADAANHVVDEIQQLG--GQAFACRCDITSEQELSALADFALSKL 86 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999997 899998865 222223333221 1121111 11121 11 22
Q ss_pred CCCCEEEEccCCCCCC--CCchh---hHHHhhHHHHHHHHHHHHH---hCCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRKP--GMTRD---DLFNINAGIVRTLCEGIAK---CCPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k~--g~~r~---d~~~~N~~i~~~i~~~I~~---~~p~a~viv~TN 159 (279)
...|++|+++|..... ..+.. +.+..|+.-...+.+.+.. ....+.++++|.
T Consensus 87 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS 146 (255)
T PRK06113 87 GKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITS 146 (255)
T ss_pred CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 4579999999863211 22222 2355666554444444432 122345555553
No 324
>PRK08605 D-lactate dehydrogenase; Validated
Probab=96.90 E-value=0.0043 Score=58.14 Aligned_cols=64 Identities=25% Similarity=0.367 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
..+||+|||. |.+|+.+|..|+. .|. +|+.+|....... .. .+. ..+++++++++||+|+++..
T Consensus 145 ~g~~VgIIG~-G~IG~~vA~~L~~~~g~--~V~~~d~~~~~~~----~~-----~~~---~~~~l~ell~~aDvIvl~lP 209 (332)
T PRK08605 145 KDLKVAVIGT-GRIGLAVAKIFAKGYGS--DVVAYDPFPNAKA----AT-----YVD---YKDTIEEAVEGADIVTLHMP 209 (332)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCccHhH----Hh-----hcc---ccCCHHHHHHhCCEEEEeCC
Confidence 4569999999 9999999998843 355 9999997642111 10 011 12367889999999999874
No 325
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=96.89 E-value=0.0089 Score=56.02 Aligned_cols=67 Identities=19% Similarity=0.167 Sum_probs=47.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
.+.+||+|||. |.+|.+++..|...|+ +|+..+.+.... .+...... +.. .+..+++++||+|+++.
T Consensus 15 L~gktIgIIG~-GsmG~AlA~~L~~sG~--~Vvv~~r~~~~s--~~~A~~~G---~~~----~s~~eaa~~ADVVvLaV 81 (330)
T PRK05479 15 IKGKKVAIIGY-GSQGHAHALNLRDSGV--DVVVGLREGSKS--WKKAEADG---FEV----LTVAEAAKWADVIMILL 81 (330)
T ss_pred hCCCEEEEEee-HHHHHHHHHHHHHCCC--EEEEEECCchhh--HHHHHHCC---Cee----CCHHHHHhcCCEEEEcC
Confidence 34569999999 9999999999999998 888887654211 11111111 111 14678899999999986
No 326
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.88 E-value=0.01 Score=53.11 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=30.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+++.|+||+|.+|..++..|+..|. +|++.+++.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~--~V~~~~r~~ 35 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY--EVWATARKA 35 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999997 999999865
No 327
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=96.88 E-value=0.0032 Score=56.06 Aligned_cols=112 Identities=13% Similarity=0.073 Sum_probs=59.0
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--h--HH-hhhhccc--------CCCeEEEEeCC----------CC
Q 023671 46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--G--VT-ADISHMD--------TGAVVRGFLGQ----------PQ 102 (279)
Q Consensus 46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g--~~-~DL~~~~--------~~~~v~~~~~~----------~d 102 (279)
|+||+||+|+++...|+..+...+|+++-+.... + .. ..+.+.. ...+++.+.+. .+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~ 80 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED 80 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence 6899999999999988877652288888776411 1 11 1111110 13455554321 11
Q ss_pred HHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 103 LENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 103 ~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
+.+-.+.+|+||++|+... ...+..++...|+...+++++...+.....++.+.|
T Consensus 81 ~~~L~~~v~~IiH~Aa~v~-~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iST 135 (249)
T PF07993_consen 81 YQELAEEVDVIIHCAASVN-FNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYIST 135 (249)
T ss_dssp HHHHHHH--EEEE--SS-S-BS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEE
T ss_pred hhccccccceeeecchhhh-hcccchhhhhhHHHHHHHHHHHHHhccCcceEEecc
Confidence 2223378999999987542 222345577889999999999998544344444434
No 328
>PRK09242 tropinone reductase; Provisional
Probab=96.88 E-value=0.025 Score=50.00 Aligned_cols=116 Identities=17% Similarity=0.193 Sum_probs=64.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeC-CCC----------HHhhh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLG-QPQ----------LENAL 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~-~~d----------~~eal 107 (279)
.+++.|+||+|.+|..++..|+..|. +|++++++. ......++.......++..+.. -.+ ..+.+
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGLGA--DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45899999999999999999999998 999999876 2222233332211112222111 111 11224
Q ss_pred CCCCEEEEccCCCCC-C--CCchh---hHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRK-P--GMTRD---DLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k-~--g~~r~---d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
...|+||+++|.... + ..+.. ..+..|+. +++.+.+.+++. +.+.++++|.
T Consensus 87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~ii~~sS 147 (257)
T PRK09242 87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQH-ASSAIVNIGS 147 (257)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhc-CCceEEEECc
Confidence 568999999986321 1 11222 23445555 444444445443 3355555553
No 329
>PRK12742 oxidoreductase; Provisional
Probab=96.88 E-value=0.016 Score=50.27 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=29.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 76 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~ 76 (279)
.++|.|+||+|.+|..++..|+..|. ++++.+..
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~G~--~v~~~~~~ 39 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTDGA--NVRFTYAG 39 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCC
Confidence 45899999999999999999999987 88887653
No 330
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.88 E-value=0.0077 Score=51.20 Aligned_cols=94 Identities=28% Similarity=0.358 Sum_probs=59.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++|+|+|. |.+|+.+|..+..-|. +|+.+|+...... ...+.. +. ..++++.++.||+|+++..
T Consensus 34 l~g~tvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~--~~~~~~----~~----~~~l~ell~~aDiv~~~~p 100 (178)
T PF02826_consen 34 LRGKTVGIIGY-GRIGRAVARRLKAFGM--RVIGYDRSPKPEE--GADEFG----VE----YVSLDELLAQADIVSLHLP 100 (178)
T ss_dssp STTSEEEEEST-SHHHHHHHHHHHHTT---EEEEEESSCHHHH--HHHHTT----EE----ESSHHHHHHH-SEEEE-SS
T ss_pred cCCCEEEEEEE-cCCcCeEeeeeecCCc--eeEEecccCChhh--hccccc----ce----eeehhhhcchhhhhhhhhc
Confidence 44679999998 9999999999998888 9999998762211 111111 11 1257888999999999874
Q ss_pred CC-CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecC
Q 023671 119 VP-RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 119 ~~-~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TN 159 (279)
.. ...++ -|. +.+.+..|++++|+++-
T Consensus 101 lt~~T~~l-------i~~-------~~l~~mk~ga~lvN~aR 128 (178)
T PF02826_consen 101 LTPETRGL-------INA-------EFLAKMKPGAVLVNVAR 128 (178)
T ss_dssp SSTTTTTS-------BSH-------HHHHTSTTTEEEEESSS
T ss_pred ccccccee-------eee-------eeeeccccceEEEeccc
Confidence 32 11121 111 22334447889999864
No 331
>PRK09072 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.013 Score=52.13 Aligned_cols=115 Identities=22% Similarity=0.245 Sum_probs=65.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCCHH---hh------h
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQLE---NA------L 107 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d~~---ea------l 107 (279)
+.++|.|+||+|.+|..++..|+.+|. +|+++++++. .....++.+ ..++..+. .-.|.. +. +
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~ 78 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA--RLLLVGRNAEKLEALAARLPY---PGRHRWVVADLTSEAGREAVLARAREM 78 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHHHHhc
Confidence 345899999999999999999999997 8999998751 112222211 11222211 111211 11 2
Q ss_pred CCCCEEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671 108 TGMDLVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (279)
Q Consensus 108 ~~ADiVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN 159 (279)
...|++|+++|..... ..+ -.+.+..|+.....+.+.+.++ .+.+.+++++.
T Consensus 79 ~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS 139 (263)
T PRK09072 79 GGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGS 139 (263)
T ss_pred CCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 4679999999864321 111 1234556665555555544432 22355665554
No 332
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0094 Score=52.47 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.++|.|+||+|.+|.+++..|...|. +|+++|++.
T Consensus 8 ~k~vlItGas~gIG~~l~~~l~~~G~--~Vi~~~r~~ 42 (252)
T PRK07035 8 GKIALVTGASRGIGEAIAKLLAQQGA--HVIVSSRKL 42 (252)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35799999999999999999999997 999999875
No 333
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.87 E-value=0.017 Score=53.39 Aligned_cols=117 Identities=14% Similarity=0.122 Sum_probs=69.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHH----hhhhcccCCCeEEEEeCCCCHHhhhCCCCEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVT----ADISHMDTGAVVRGFLGQPQLENALTGMDLVI 114 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~----~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVI 114 (279)
.|||+|+|+ |.||+.++..|...|. +|.++++.. ..... ..+........+.... . + .+.....|+||
T Consensus 2 ~m~I~IiGa-GaiG~~~a~~L~~~G~--~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~-~-~-~~~~~~~D~vi 75 (305)
T PRK05708 2 SMTWHILGA-GSLGSLWACRLARAGL--PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPA-E-T-ADAAEPIHRLL 75 (305)
T ss_pred CceEEEECC-CHHHHHHHHHHHhCCC--CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCC-C-C-cccccccCEEE
Confidence 469999999 9999999999998887 899999853 11110 0011100001111111 1 1 12356889999
Q ss_pred EccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCCCchHHHHHHHHHHhCCCCCCCeeee
Q 023671 115 IPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPVNSTVPIAAEVFKKAGTYDPKKLLGV 186 (279)
Q Consensus 115 itag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~~~kViG~ 186 (279)
+|.- .- . ..+.++.+... .+++.++.+-|=++....+ ++ -++.+++++-
T Consensus 76 v~vK----~~--------~----~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l-----~~--~~~~~~v~~g 125 (305)
T PRK05708 76 LACK----AY--------D----AEPAVASLAHRLAPGAELLLLQNGLGSQDAV-----AA--RVPHARCIFA 125 (305)
T ss_pred EECC----HH--------h----HHHHHHHHHhhCCCCCEEEEEeCCCCCHHHH-----HH--hCCCCcEEEE
Confidence 9862 10 1 23444555554 3788888889998876533 32 2566777765
No 334
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.87 E-value=0.012 Score=47.22 Aligned_cols=73 Identities=25% Similarity=0.308 Sum_probs=44.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC--CCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
|||+|+|++|.+|+.++..+...+-..=+..+|.+.......|+.+... ...+.. ++|+++.+..+|+||-..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v---~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV---TDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE---BS-HHHHTTH-SEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCccccc---chhHHHhcccCCEEEEcC
Confidence 5999999999999999999988543323456666551112233332211 122222 357888899999988763
No 335
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.86 E-value=0.017 Score=50.17 Aligned_cols=107 Identities=19% Similarity=0.175 Sum_probs=61.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeC-CCC----HHhhhCCCCEEE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLG-QPQ----LENALTGMDLVI 114 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~-~~d----~~eal~~ADiVI 114 (279)
+.+++.|+||+|.+|.+++..|++.|. +|++.|+++... .. ..+..... -++ ..+.+...|++|
T Consensus 4 ~~k~~lVtGas~~iG~~ia~~l~~~G~--~v~~~~r~~~~~----~~-----~~~~~~~~D~~~~~~~~~~~~~~id~lv 72 (235)
T PRK06550 4 MTKTVLITGAASGIGLAQARAFLAQGA--QVYGVDKQDKPD----LS-----GNFHFLQLDLSDDLEPLFDWVPSVDILC 72 (235)
T ss_pred CCCEEEEcCCCchHHHHHHHHHHHCCC--EEEEEeCCcccc----cC-----CcEEEEECChHHHHHHHHHhhCCCCEEE
Confidence 345899999999999999999999997 899999865211 00 11111110 001 122356789999
Q ss_pred EccCCCCC--C--CCch---hhHHHhhHHHHHHHH----HHHHHhCCCceEEEec
Q 023671 115 IPAGVPRK--P--GMTR---DDLFNINAGIVRTLC----EGIAKCCPNATVNLIS 158 (279)
Q Consensus 115 itag~~~k--~--g~~r---~d~~~~N~~i~~~i~----~~I~~~~p~a~viv~T 158 (279)
+++|.... + ..+. ...+..|+.....+. +.+.+. +.+.+++++
T Consensus 73 ~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~~~iv~~s 126 (235)
T PRK06550 73 NTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLER-KSGIIINMC 126 (235)
T ss_pred ECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhc-CCcEEEEEc
Confidence 99986421 1 1111 234555655444444 444333 335555554
No 336
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.85 E-value=0.034 Score=49.69 Aligned_cols=116 Identities=14% Similarity=0.142 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------C
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------T 108 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------~ 108 (279)
.+.+.|+||+|.+|..++..|+..|. +|+++|+++ +.....++.... ..++..+. ..+| .++.+ .
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGA--DVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 45789999999999999999999998 899999875 222223332211 11222211 1112 22222 3
Q ss_pred CCCEEEEccCCCCCC---CCchh---hHHHhh----HHHHHHHHHHHHHhCCCceEEEecCC
Q 023671 109 GMDLVIIPAGVPRKP---GMTRD---DLFNIN----AGIVRTLCEGIAKCCPNATVNLISNP 160 (279)
Q Consensus 109 ~ADiVIitag~~~k~---g~~r~---d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNP 160 (279)
..|++|+++|.+... ..+.. ..+..| +.+.+.+.+.+++.. .+.||++|..
T Consensus 85 ~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~-~g~Ii~isS~ 145 (263)
T PRK08339 85 EPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKG-FGRIIYSTSV 145 (263)
T ss_pred CCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CCEEEEEcCc
Confidence 589999999865321 12222 223344 446777777776543 4566666543
No 337
>PRK08862 short chain dehydrogenase; Provisional
Probab=96.85 E-value=0.21 Score=43.78 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=65.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HH-------hh
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LE-------NA 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~-------ea 106 (279)
+.+.+.|+||++-+|..++..|++.|. +|+++++++ .+....++.... ..+..+. ...| +. +.
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~--~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~ 79 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA--TLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQ 79 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC--EEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999998 899999876 222222232211 1111111 1111 11 12
Q ss_pred hC-CCCEEEEccCCCCCC----CCchhh---HHHhh----HHHHHHHHHHHHHhCCCceEEEecC
Q 023671 107 LT-GMDLVIIPAGVPRKP----GMTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 107 l~-~ADiVIitag~~~k~----g~~r~d---~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+. ..|++|.++|....+ ..+..+ .+..| +.+.+...+.+.+....+.|+++|.
T Consensus 80 ~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS 144 (227)
T PRK08862 80 FNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVIS 144 (227)
T ss_pred hCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 23 689999999743221 112222 22223 3344555666665544566666664
No 338
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.85 E-value=0.039 Score=49.39 Aligned_cols=35 Identities=20% Similarity=0.243 Sum_probs=31.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.+++.|+||+|.+|..++..|+..|. +|+++|++.
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~--~V~~~~r~~ 44 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA--KVAILDRNQ 44 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 45899999999999999999999998 899999875
No 339
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=96.84 E-value=0.0057 Score=56.26 Aligned_cols=64 Identities=16% Similarity=0.291 Sum_probs=46.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|||++||. |.+|..++..|...|+ ++.++|+++. ..++.... ... ..+..++.++||+||++..
T Consensus 1 m~Ig~IGl-G~MG~~ma~~L~~~G~--~v~v~~~~~~---~~~~~~~g----~~~---~~s~~~~~~~advVi~~v~ 64 (292)
T PRK15059 1 MKLGFIGL-GIMGTPMAINLARAGH--QLHVTTIGPV---ADELLSLG----AVS---VETARQVTEASDIIFIMVP 64 (292)
T ss_pred CeEEEEcc-CHHHHHHHHHHHHCCC--eEEEEeCCHh---HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 48999998 9999999999999998 8999998652 12232211 111 1245677899999999863
No 340
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=96.83 E-value=0.056 Score=48.40 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=82.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCC----------HHhhhCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQ----------LENALTG 109 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d----------~~eal~~ 109 (279)
+-+.|+|||+-+|..+|..|...|. .|+|..++. ++..+.++.+.. ........ +| +.+.+..
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~G~--~vvl~aRR~drL~~la~~~~~~~--~~~~~~DV-tD~~~~~~~i~~~~~~~g~ 81 (246)
T COG4221 7 KVALITGASSGIGEATARALAEAGA--KVVLAARREERLEALADEIGAGA--ALALALDV-TDRAAVEAAIEALPEEFGR 81 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHCCC--eEEEEeccHHHHHHHHHhhccCc--eEEEeecc-CCHHHHHHHHHHHHHhhCc
Confidence 4578999999999999999999999 999999986 455666666411 11111111 12 2344678
Q ss_pred CCEEEEccCCCCCCCC---c---hhhHHHhhHHHHHH----HHHHHHHhCCCceEEEecCCCCchHHHHHHHHHHhCCCC
Q 023671 110 MDLVIIPAGVPRKPGM---T---RDDLFNINAGIVRT----LCEGIAKCCPNATVNLISNPVNSTVPIAAEVFKKAGTYD 179 (279)
Q Consensus 110 ADiVIitag~~~k~g~---~---r~d~~~~N~~i~~~----i~~~I~~~~p~a~viv~TNPvd~~t~~~~~~~~~~~~~~ 179 (279)
.|++|..||...-... + -..++..|++-+.. +.+.+.+. ..+.||+++.=.... -||
T Consensus 82 iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r-~~G~IiN~~SiAG~~------------~y~ 148 (246)
T COG4221 82 IDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVER-KSGHIINLGSIAGRY------------PYP 148 (246)
T ss_pred ccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhc-CCceEEEeccccccc------------cCC
Confidence 9999999997543211 1 23456778765544 45555543 356888876443322 366
Q ss_pred CCCeeeecc
Q 023671 180 PKKLLGVTM 188 (279)
Q Consensus 180 ~~kViG~t~ 188 (279)
-..|++-|.
T Consensus 149 ~~~vY~ATK 157 (246)
T COG4221 149 GGAVYGATK 157 (246)
T ss_pred CCccchhhH
Confidence 677877653
No 341
>PRK09134 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.0085 Score=53.09 Aligned_cols=113 Identities=15% Similarity=0.157 Sum_probs=62.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL------ 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------ 107 (279)
.+++.|+||+|++|.+++..|...|. ++++.+... .......+.+.. .++..+. ..+| +.+++
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~~~~~~~~~~~~ 84 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGF--DVAVHYNRSRDEAEALAAEIRALG--RRAVALQADLADEAEVRALVARASAA 84 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999999887 888876543 111112222211 2222221 1122 12222
Q ss_pred -CCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHhC---CCceEEEe
Q 023671 108 -TGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKCC---PNATVNLI 157 (279)
Q Consensus 108 -~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~~---p~a~viv~ 157 (279)
...|+||+++|..... ..+. ...+..|+.-...+++.+.+.. ..+.++++
T Consensus 85 ~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ 144 (258)
T PRK09134 85 LGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNM 144 (258)
T ss_pred cCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 3479999999864321 1121 2345667655555555444432 23455544
No 342
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.82 E-value=0.013 Score=54.63 Aligned_cols=114 Identities=18% Similarity=0.082 Sum_probs=65.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------- 106 (279)
+.++|.|+||+|.+|..++..|+.+|. +|+++++++ +.....++.... ..+..+. .-+| .++.
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~--~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 81 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA--RLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASF 81 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999998 899999876 222223333221 1222110 1112 1121
Q ss_pred hCCCCEEEEccCCCCCC---CCc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEec
Q 023671 107 LTGMDLVIIPAGVPRKP---GMT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~T 158 (279)
+...|++|.+||..... ..+ -.+.+..|+. ..+...+.+.+.. .+.+|+++
T Consensus 82 ~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~-~g~iV~is 142 (330)
T PRK06139 82 GGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQG-HGIFINMI 142 (330)
T ss_pred cCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC-CCEEEEEc
Confidence 24679999999864321 111 1223455543 3444555555433 45666654
No 343
>PLN03139 formate dehydrogenase; Provisional
Probab=96.82 E-value=0.0099 Score=56.91 Aligned_cols=95 Identities=22% Similarity=0.198 Sum_probs=60.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++|+|||. |.+|..++..|..-|. +|..+|......... .+. .+.. ..++++.+++||+|+++..
T Consensus 197 L~gktVGIVG~-G~IG~~vA~~L~afG~--~V~~~d~~~~~~~~~--~~~----g~~~---~~~l~ell~~sDvV~l~lP 264 (386)
T PLN03139 197 LEGKTVGTVGA-GRIGRLLLQRLKPFNC--NLLYHDRLKMDPELE--KET----GAKF---EEDLDAMLPKCDVVVINTP 264 (386)
T ss_pred CCCCEEEEEee-cHHHHHHHHHHHHCCC--EEEEECCCCcchhhH--hhc----Ccee---cCCHHHHHhhCCEEEEeCC
Confidence 45679999998 9999999999987777 899999764111111 111 1111 1367888999999999863
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.. ..+-.++. .+.+....|++++|+++
T Consensus 265 lt-----------~~T~~li~--~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 265 LT-----------EKTRGMFN--KERIAKMKKGVLIVNNA 291 (386)
T ss_pred CC-----------HHHHHHhC--HHHHhhCCCCeEEEECC
Confidence 21 11112221 23444445889998875
No 344
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=96.81 E-value=0.017 Score=50.32 Aligned_cols=71 Identities=20% Similarity=0.280 Sum_probs=44.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEe-CCCC------HHhhhCCCCEEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFL-GQPQ------LENALTGMDLVI 114 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~-~~~d------~~eal~~ADiVI 114 (279)
|+|.|+||+|.+|..++..|+.++....+.+.+.+.... .. ..++..+. ..++ +.+.+...|++|
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~----~~----~~~~~~~~~Dls~~~~~~~~~~~~~~id~li 72 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD----FQ----HDNVQWHALDVTDEAEIKQLSEQFTQLDWLI 72 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc----cc----cCceEEEEecCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998876433677766654211 11 11121111 1111 123356899999
Q ss_pred EccCCC
Q 023671 115 IPAGVP 120 (279)
Q Consensus 115 itag~~ 120 (279)
+++|..
T Consensus 73 ~~aG~~ 78 (235)
T PRK09009 73 NCVGML 78 (235)
T ss_pred ECCccc
Confidence 999975
No 345
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.80 E-value=0.0068 Score=56.61 Aligned_cols=73 Identities=26% Similarity=0.348 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhC-CCCcEEEEEeCCCchhHH-hhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKIN-PLVSVLHLYDVVNTPGVT-ADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~-~~~~ev~L~D~~~~~g~~-~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
++||+|+||+|.||+.+...|..+ ..+.++.++-..+..|+. .++..... .+... ..| ..++.++|+|++++|
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~--~v~~~--~~~-~~~~~~~Divf~~ag 75 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI--GVPED--AAD-EFVFSDVDIVFFAAG 75 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc--cCccc--ccc-ccccccCCEEEEeCc
Confidence 369999999999999999999884 456778888765544443 44443221 11100 113 245779999999986
No 346
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=96.79 E-value=0.0063 Score=57.74 Aligned_cols=71 Identities=15% Similarity=0.222 Sum_probs=47.9
Q ss_pred cEEEEEcCCCchHHHHHHHHH-hCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMK-INPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~-~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
+||+|+||+|.||+.+...|. .+.. ..+++++...+..|....+... ...++. .++ .+++.+.|++++++|
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~--~~~v~~---~~~-~~~~~~vDivffa~g 73 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGT--TGTLQD---AFD-IDALKALDIIITCQG 73 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCC--cceEEc---Ccc-cccccCCCEEEEcCC
Confidence 489999999999999999888 5554 3788898876543443323221 112322 212 246899999999986
No 347
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=96.79 E-value=0.012 Score=60.65 Aligned_cols=91 Identities=19% Similarity=0.278 Sum_probs=59.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~ 120 (279)
.||+|||+ |.+|..++..+...|+..+|..+|+++.. ..+.+.. .. .. ..+++.+++.++|+||++...
T Consensus 4 ~~I~IIG~-G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g---~~--~~---~~~~~~~~~~~aDvVilavp~- 73 (735)
T PRK14806 4 GRVVVIGL-GLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLG---VI--DR---GEEDLAEAVSGADVIVLAVPV- 73 (735)
T ss_pred cEEEEEee-CHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCC---CC--Cc---ccCCHHHHhcCCCEEEECCCH-
Confidence 58999998 99999999999988854589999987621 1122111 10 00 123566778999999998631
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEe
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLI 157 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~ 157 (279)
..+.++++.+.++. ++.+++.+
T Consensus 74 ---------------~~~~~vl~~l~~~~~~~~ii~d~ 96 (735)
T PRK14806 74 ---------------LAMEKVLADLKPLLSEHAIVTDV 96 (735)
T ss_pred ---------------HHHHHHHHHHHHhcCCCcEEEEc
Confidence 12455556666553 45554443
No 348
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.78 E-value=0.014 Score=51.56 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.+++.|+|++|.+|..++..|++.|. +|++.|+++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~--~v~~~~r~~ 42 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA--DVALFDLRT 42 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCc
Confidence 45899999999999999999999997 999999865
No 349
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=96.78 E-value=0.0037 Score=55.39 Aligned_cols=109 Identities=17% Similarity=0.204 Sum_probs=71.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC------chh---HHhhhhccc-CCCe------EEEEeCCCCHH
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN------TPG---VTADISHMD-TGAV------VRGFLGQPQLE 104 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~------~~g---~~~DL~~~~-~~~~------v~~~~~~~d~~ 104 (279)
.-||+|+|. |.+|++-|..++..|+ +|.|||+.+ ++. ...+|+... ...+ +..+++++++.
T Consensus 3 ~~ki~ivgS-gl~g~~WAmlFAs~Gy--qVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~ 79 (313)
T KOG2305|consen 3 FGKIAIVGS-GLVGSSWAMLFASSGY--QVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLN 79 (313)
T ss_pred ccceeEeec-ccccchHHHHHhccCc--eEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHH
Confidence 348999996 9999999999999999 999999976 111 122333321 1111 11245577888
Q ss_pred hhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchHHHH
Q 023671 105 NALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTVPIA 168 (279)
Q Consensus 105 eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t~~~ 168 (279)
|.+++|=.|=.|+ .+...+.+.+.+++.+.. |.. |..|..+..|....
T Consensus 80 E~vk~Ai~iQEcv--------------pE~L~lkk~ly~qlD~i~d~~t--IlaSSTSt~mpS~~ 128 (313)
T KOG2305|consen 80 ELVKGAIHIQECV--------------PEDLNLKKQLYKQLDEIADPTT--ILASSTSTFMPSKF 128 (313)
T ss_pred HHHhhhhhHHhhc--------------hHhhHHHHHHHHHHHHhcCCce--EEeccccccChHHH
Confidence 8888884443343 344567788888888876 443 34566666666433
No 350
>PRK07831 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.11 Score=45.99 Aligned_cols=35 Identities=29% Similarity=0.291 Sum_probs=30.5
Q ss_pred CcEEEEEcCCC-chHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAG-GIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G-~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.+++.|+||+| -+|..++..|+..|. +|++.|.+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~G~--~V~~~~~~~ 52 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEEGA--RVVISDIHE 52 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHcCC--EEEEEeCCH
Confidence 45899999987 599999999999997 899999865
No 351
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.77 E-value=0.012 Score=51.98 Aligned_cols=96 Identities=21% Similarity=0.292 Sum_probs=64.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~ 120 (279)
+||+|||+ |.+|..+...+.... -+.-+.+||.+.. ++..+......+. .+++.+.+.+.|++|.+|+
T Consensus 1 l~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v~D~~~e--k~~~~~~~~~~~~------~s~ide~~~~~DlvVEaAS-- 69 (255)
T COG1712 1 LKVGIVGC-GAIGKFLLELVRDGRVDFELVAVYDRDEE--KAKELEASVGRRC------VSDIDELIAEVDLVVEAAS-- 69 (255)
T ss_pred CeEEEEec-cHHHHHHHHHHhcCCcceeEEEEecCCHH--HHHHHHhhcCCCc------cccHHHHhhccceeeeeCC--
Confidence 58999999 999999987776543 3567788888752 2222332221111 1356677799999999985
Q ss_pred CCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671 121 RKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (279)
Q Consensus 121 ~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd 162 (279)
.+.+++++.++-+.+.|.+|+.+.--+|
T Consensus 70 --------------~~Av~e~~~~~L~~g~d~iV~SVGALad 97 (255)
T COG1712 70 --------------PEAVREYVPKILKAGIDVIVMSVGALAD 97 (255)
T ss_pred --------------HHHHHHHhHHHHhcCCCEEEEechhccC
Confidence 3567888888888877877665543343
No 352
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.77 E-value=0.0082 Score=58.86 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=58.4
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc-cCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM-DTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~-~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~ 121 (279)
+|+|||. |.+|.++|..|+..|+ +|.++|+++.+ ..++... .....+.......++.+.++++|+|+++..
T Consensus 1 ~IG~IGL-G~MG~~mA~nL~~~G~--~V~v~drt~~~--~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~--- 72 (467)
T TIGR00873 1 DIGVIGL-AVMGSNLALNMADHGF--TVSVYNRTPEK--TDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVK--- 72 (467)
T ss_pred CEEEEee-HHHHHHHHHHHHhcCC--eEEEEeCCHHH--HHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECC---
Confidence 4899998 9999999999999998 99999987622 2222221 000112221111122234567999999862
Q ss_pred CCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecC
Q 023671 122 KPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 159 (279)
Q Consensus 122 k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TN 159 (279)
++ +.+.++++.+..+ .++.++|-.+|
T Consensus 73 -~~-----------~~v~~Vi~~l~~~L~~g~iIID~gn 99 (467)
T TIGR00873 73 -AG-----------APVDAVINQLLPLLEKGDIIIDGGN 99 (467)
T ss_pred -Cc-----------HHHHHHHHHHHhhCCCCCEEEECCC
Confidence 11 2234444555554 36677777776
No 353
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.039 Score=49.27 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=64.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCH----------HhhhC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQL----------ENALT 108 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~----------~eal~ 108 (279)
.++|.|+||+|.+|..++..|+.+|. +|++.++++. .....++... ..... .-+|. .+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~~----~~~~~-D~~~~~~~~~~~~~~~~~~~ 77 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAALGA--RVAIGDLDEALAKETAAELGLV----VGGPL-DVTDPASFAAFLDAVEADLG 77 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHhccc----eEEEc-cCCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999997 8999998752 1111222210 01000 01111 12235
Q ss_pred CCCEEEEccCCCCCCC---Cc---hhhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 109 GMDLVIIPAGVPRKPG---MT---RDDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 109 ~ADiVIitag~~~k~g---~~---r~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
+.|++|+++|...... .+ -...+..|+. +.+.+.+.+.+. +.+.|+++|.
T Consensus 78 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~-~~g~iv~isS 137 (273)
T PRK07825 78 PIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPR-GRGHVVNVAS 137 (273)
T ss_pred CCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEEcC
Confidence 7899999998753211 11 1234555654 445555555543 3456666654
No 354
>PRK08324 short chain dehydrogenase; Validated
Probab=96.76 E-value=0.013 Score=60.10 Aligned_cols=113 Identities=21% Similarity=0.299 Sum_probs=63.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENAL------- 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal------- 107 (279)
.++|.|+||+|.+|..++..|+..|. +|+++|++.. .....++... ..+..+. ..+| ..+++
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga--~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~ 496 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA--CVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAF 496 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC--EEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 46899999999999999999999997 8999998762 2222222221 1121111 1112 12222
Q ss_pred CCCCEEEEccCCCCCC---CCchh---hHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671 108 TGMDLVIIPAGVPRKP---GMTRD---DLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 108 ~~ADiVIitag~~~k~---g~~r~---d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T 158 (279)
.+.|+||+++|..... ..+.. ..+..|+.. ++...+.+++....+.|++++
T Consensus 497 g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 497 GGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 3689999999864321 11111 223445444 444455555443335555554
No 355
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.76 E-value=0.018 Score=48.92 Aligned_cols=33 Identities=39% Similarity=0.587 Sum_probs=29.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
||.|+|+ |-+|+.++..|+..|. .++.|+|.+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGV-GNLKLVDFDV 33 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 6899999 9999999999999885 5899999875
No 356
>PRK12747 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.061 Score=47.32 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 75 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~ 75 (279)
+.+++.|+||+|.+|.+++..|+..|. +|++.+.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~--~v~~~~~ 36 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA--LVAIHYG 36 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC--eEEEEcC
Confidence 346899999999999999999999997 8888754
No 357
>PRK07023 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0037 Score=54.80 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=31.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+|||.|+||+|.+|..++..|+.+|. +|++++++.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~--~v~~~~r~~ 35 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI--AVLGVARSR 35 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC--EEEEEecCc
Confidence 46899999999999999999999997 899999865
No 358
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.75 E-value=0.0075 Score=52.66 Aligned_cols=34 Identities=15% Similarity=0.220 Sum_probs=31.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
||+.|+||+|.+|..++..|...|. +|+++|+++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~--~v~~~~r~~ 34 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGH--KVTLVGARR 34 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4899999999999999999999997 999999875
No 359
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.75 E-value=0.023 Score=49.78 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~ 77 (279)
.+++.|+||+|.+|..++..|+..|. +|++. +++.
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~--~v~~~~~r~~ 39 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY--DIAVNYARSR 39 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcCCCH
Confidence 35899999999999999999999987 77664 4443
No 360
>PLN02928 oxidoreductase family protein
Probab=96.74 E-value=0.0072 Score=57.03 Aligned_cols=104 Identities=23% Similarity=0.177 Sum_probs=61.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhh--hcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADI--SHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL--~~~~~~~~v~~~~~~~d~~eal~~ADiVIit 116 (279)
...++|+|||. |.+|+.+|..+..-|. +|+.+|+.........+ ................++++.++.||+|+++
T Consensus 157 l~gktvGIiG~-G~IG~~vA~~l~afG~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~ 233 (347)
T PLN02928 157 LFGKTVFILGY-GAIGIELAKRLRPFGV--KLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLC 233 (347)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHhhCCC--EEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEEC
Confidence 34579999998 9999999999987787 99999975311111100 0000000000000123688999999999998
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.... + . +-.++. .+.+.+..|.+++|+++
T Consensus 234 lPlt--~-~--------T~~li~--~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 234 CTLT--K-E--------TAGIVN--DEFLSSMKKGALLVNIA 262 (347)
T ss_pred CCCC--h-H--------hhcccC--HHHHhcCCCCeEEEECC
Confidence 6422 1 1 111111 23344445889999986
No 361
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=96.74 E-value=0.014 Score=54.27 Aligned_cols=105 Identities=18% Similarity=0.115 Sum_probs=67.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-----chhHHhhhhcccCCCeEEEEeC-CCC---HHhhh--CC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-----TPGVTADISHMDTGAVVRGFLG-QPQ---LENAL--TG 109 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-----~~g~~~DL~~~~~~~~v~~~~~-~~d---~~eal--~~ 109 (279)
.+.|.|+||+|++|+|.+..|+..|+ +|+++|.-. +-..+..+.+.. ..+.+..+ -.| +++.+ ..
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy--~v~~vDNl~n~~~~sl~r~~~l~~~~--~~v~f~~~Dl~D~~~L~kvF~~~~ 77 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGY--GVVIVDNLNNSYLESLKRVRQLLGEG--KSVFFVEGDLNDAEALEKLFSEVK 77 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCC--cEEEEecccccchhHHHHHHHhcCCC--CceEEEEeccCCHHHHHHHHhhcC
Confidence 35899999999999999999999999 999999754 112223333321 22332211 012 22222 35
Q ss_pred CCEEEEccCCCCC-CC-CchhhHHHhhHHHHHHHHHHHHHhC
Q 023671 110 MDLVIIPAGVPRK-PG-MTRDDLFNINAGIVRTLCEGIAKCC 149 (279)
Q Consensus 110 ADiVIitag~~~k-~g-~~r~d~~~~N~~i~~~i~~~I~~~~ 149 (279)
-|-|++.|+...- +. +.+..+...|+--...+.+.+++++
T Consensus 78 fd~V~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~ 119 (343)
T KOG1371|consen 78 FDAVMHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHN 119 (343)
T ss_pred CceEEeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcC
Confidence 7888988764321 11 2245566788888999999999987
No 362
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.73 E-value=0.0084 Score=56.99 Aligned_cols=72 Identities=18% Similarity=0.146 Sum_probs=45.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhC-CC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKIN-PL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~-~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|+||+|+||+|.||..+...++.. .+ ..++.++......+...++... ...... ..+ .+.++++|+||++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~----~~~v~~-~~~-~~~~~~~Divf~a~~ 74 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK----EGTLQD-AFD-IDALKKLDIIITCQG 74 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC----cceEEe-cCC-hhHhcCCCEEEECCC
Confidence 469999999999999999755554 44 4568887664432333233321 111111 122 256789999999875
No 363
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.71 E-value=0.034 Score=48.67 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 76 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~ 76 (279)
.++|.|+||+|.+|.+++..|+..|. +|++.+.+
T Consensus 5 ~k~ilItGas~gIG~~la~~l~~~G~--~vv~~~~~ 38 (253)
T PRK08642 5 EQTVLVTGGSRGLGAAIARAFAREGA--RVVVNYHQ 38 (253)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCC--eEEEEcCC
Confidence 35899999999999999999999997 88876653
No 364
>PRK06953 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.027 Score=48.71 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=62.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHh---hhC--CCCEEEE
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLEN---ALT--GMDLVII 115 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~e---al~--~ADiVIi 115 (279)
+++.|+||+|.+|++++..|+..|. +|+++|++.... .++..... ..+.. .+...++.+ .+. ..|+||+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~--~v~~~~r~~~~~--~~~~~~~~-~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~ 76 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGW--RVIATARDAAAL--AALQALGA-EALALDVADPASVAGLAWKLDGEALDAAVY 76 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCC--EEEEEECCHHHH--HHHHhccc-eEEEecCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 4899999999999999999998887 899999875211 11221110 00111 111111222 122 4799999
Q ss_pred ccCCCCC---C--CCch---hhHHHhhHHHHHHHHHHHHHhC--CCceEEEecC
Q 023671 116 PAGVPRK---P--GMTR---DDLFNINAGIVRTLCEGIAKCC--PNATVNLISN 159 (279)
Q Consensus 116 tag~~~k---~--g~~r---~d~~~~N~~i~~~i~~~I~~~~--p~a~viv~TN 159 (279)
++|.... + ..+. ...+..|+.-...+.+.+.++- ..+.+++++.
T Consensus 77 ~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS 130 (222)
T PRK06953 77 VAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSS 130 (222)
T ss_pred CCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcC
Confidence 9987521 1 1122 2345667665555555554421 2344555443
No 365
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=96.70 E-value=0.032 Score=48.57 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=30.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
++|.|+|++|.+|++++..|...|. .|++.|+++
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~--~vi~~~r~~ 36 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY--RVIATYFSG 36 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCc
Confidence 4889999999999999999999887 899999874
No 366
>PRK12744 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.045 Score=48.36 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 76 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~ 76 (279)
.+++.|+||+|.+|..++..|+..|. ++++++.+
T Consensus 8 ~k~vlItGa~~gIG~~~a~~l~~~G~--~vv~i~~~ 41 (257)
T PRK12744 8 GKVVLIAGGAKNLGGLIARDLAAQGA--KAVAIHYN 41 (257)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--cEEEEecC
Confidence 35899999999999999999999887 76666643
No 367
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.016 Score=52.90 Aligned_cols=115 Identities=23% Similarity=0.248 Sum_probs=64.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEE-eCCCCH---Hh-------h
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGF-LGQPQL---EN-------A 106 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~-~~~~d~---~e-------a 106 (279)
+.+++.|+||+|.+|..++..|+..|. +|++.++++ ......++... ..+..+ ..-+|. .+ .
T Consensus 8 ~gk~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~~~l~~~~~~l~~~---~~~~~~~~Dv~d~~~v~~~~~~~~~~ 82 (296)
T PRK05872 8 AGKVVVVTGAARGIGAELARRLHARGA--KLALVDLEEAELAALAAELGGD---DRVLTVVADVTDLAAMQAAAEEAVER 82 (296)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhcCC---CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 345899999999999999999999997 899999875 22222233211 111110 111221 11 1
Q ss_pred hCCCCEEEEccCCCCCC---CCch---hhHHHhhHHHHHHHHHHHHHh--CCCceEEEecC
Q 023671 107 LTGMDLVIIPAGVPRKP---GMTR---DDLFNINAGIVRTLCEGIAKC--CPNATVNLISN 159 (279)
Q Consensus 107 l~~ADiVIitag~~~k~---g~~r---~d~~~~N~~i~~~i~~~I~~~--~p~a~viv~TN 159 (279)
+...|+||+++|..... ..+. ...+..|+.....+++.+... ...+.|+++|.
T Consensus 83 ~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS 143 (296)
T PRK05872 83 FGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSS 143 (296)
T ss_pred cCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 24689999999964311 1111 223455655444444443322 12455666553
No 368
>PRK07775 short chain dehydrogenase; Provisional
Probab=96.68 E-value=0.02 Score=51.41 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=30.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+.|+||+|.+|.+++..|+.+|. +|++.+++.
T Consensus 11 ~~vlVtGa~g~iG~~la~~L~~~G~--~V~~~~r~~ 44 (274)
T PRK07775 11 RPALVAGASSGIGAATAIELAAAGF--PVALGARRV 44 (274)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 4799999999999999999999997 899988764
No 369
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.68 E-value=0.023 Score=52.11 Aligned_cols=121 Identities=18% Similarity=0.241 Sum_probs=79.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe----CCCCHH-------hhh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL----GQPQLE-------NAL 107 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~----~~~d~~-------eal 107 (279)
.+.|.|+|||.-+|.++|+.++..|. .++++.... ++-.+.++.......++.... ..++.+ .-+
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~--~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGA--KLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHF 89 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCC--ceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhc
Confidence 34688999999999999999999997 788887654 222324444432111122211 111222 235
Q ss_pred CCCCEEEEccCCCCCCCC-c------hhhHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671 108 TGMDLVIIPAGVPRKPGM-T------RDDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPVNSTV 165 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~-~------r~d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t 165 (279)
.+.|+.|..||..+ .+. + ..+.+..| +-..+...+.+++.+ ++.|++++...+.+.
T Consensus 90 g~vDvLVNNAG~~~-~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~-~GhIVvisSiaG~~~ 156 (282)
T KOG1205|consen 90 GRVDVLVNNAGISL-VGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRN-DGHIVVISSIAGKMP 156 (282)
T ss_pred CCCCEEEecCcccc-ccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcC-CCeEEEEeccccccC
Confidence 79999999999876 321 1 12234444 678899999999888 888888877776554
No 370
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=96.67 E-value=0.012 Score=53.28 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=44.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
++||+|||+ |.+|..++..+...+ -..-+.++|.+.. .+.++.... . ...+ +++++.+.++|+|++++.
T Consensus 1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~--~a~~~a~~~-~--~~~~---~~~~ell~~~DvVvi~a~ 70 (265)
T PRK13304 1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLE--KAENLASKT-G--AKAC---LSIDELVEDVDLVVECAS 70 (265)
T ss_pred CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHH--HHHHHHHhc-C--CeeE---CCHHHHhcCCCEEEEcCC
Confidence 469999998 999999998887654 2223567887652 112222211 1 1222 356666699999999974
No 371
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.66 E-value=0.016 Score=50.59 Aligned_cols=36 Identities=25% Similarity=0.357 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+..++.|+|++|.+|..++..|+.+|. +|+++|.++
T Consensus 4 ~~~~~lItG~~g~iG~~~a~~l~~~G~--~vi~~~r~~ 39 (253)
T PRK08217 4 KDKVIVITGGAQGLGRAMAEYLAQKGA--KLALIDLNQ 39 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 345899999999999999999999987 899999876
No 372
>PRK07201 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.028 Score=56.78 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=65.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---HHhhh-----
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---LENAL----- 107 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~~eal----- 107 (279)
.+.+++.|+||+|.+|..++..|+..|. +|+++++++ ......++.... .++..+. ...| .++++
T Consensus 369 ~~~k~vlItGas~giG~~la~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~ 444 (657)
T PRK07201 369 LVGKVVLITGASSGIGRATAIKVAEAGA--TVFLVARNGEALDELVAEIRAKG--GTAHAYTCDLTDSAAVDHTVKDILA 444 (657)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHH
Confidence 4456899999999999999999999997 999999876 222222332211 1222211 1112 22222
Q ss_pred --CCCCEEEEccCCCCCCC---C-----chhhHHHhhHHH----HHHHHHHHHHhCCCceEEEec
Q 023671 108 --TGMDLVIIPAGVPRKPG---M-----TRDDLFNINAGI----VRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 108 --~~ADiVIitag~~~k~g---~-----~r~d~~~~N~~i----~~~i~~~I~~~~p~a~viv~T 158 (279)
...|++|++||...... . +-...+..|+.. ++.+.+.+++. ..+.|+++|
T Consensus 445 ~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~g~iv~is 508 (657)
T PRK07201 445 EHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRER-RFGHVVNVS 508 (657)
T ss_pred hcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-CCCEEEEEC
Confidence 26899999998642211 0 112334556554 44445545443 345566655
No 373
>PRK08703 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.047 Score=47.62 Aligned_cols=36 Identities=17% Similarity=0.227 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.++|.|+||+|.+|.+++..|+.+|. +|+++++++
T Consensus 5 ~~k~vlItG~sggiG~~la~~l~~~g~--~V~~~~r~~ 40 (239)
T PRK08703 5 SDKTILVTGASQGLGEQVAKAYAAAGA--TVILVARHQ 40 (239)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCC--EEEEEeCCh
Confidence 346899999999999999999999987 899999876
No 374
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.64 E-value=0.021 Score=50.09 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=28.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 75 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~ 75 (279)
+++|.|+||+|.+|+.++..|+..|. +|++.+.
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~--~v~~~~~ 34 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGW--SVGINYA 34 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCC--EEEEEeC
Confidence 45899999999999999999999987 7777653
No 375
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.64 E-value=0.027 Score=49.26 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 75 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~ 75 (279)
.++|.|+||+|++|++++..|+.+|. ++++...
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~--~v~~~~~ 38 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS--LVVVNAK 38 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 46899999999999999999999997 7766554
No 376
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.63 E-value=0.014 Score=54.94 Aligned_cols=74 Identities=24% Similarity=0.255 Sum_probs=44.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEE-EEeCCCchhHHhh--hhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLH-LYDVVNTPGVTAD--ISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~-L~D~~~~~g~~~D--L~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
+||+|+||+|.+|..++..|...+.. +++ +++.++..++... ..+......... . ..+.++..+++|+||++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~-el~~l~~s~~sagk~~~~~~~~l~~~~~~~~-~-~~~~~~~~~~~DvVf~alP 77 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEV-EITYLVSSRESAGKPVSEVHPHLRGLVDLNL-E-PIDEEEIAEDADVVFLALP 77 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEeccchhcCCChHHhCccccccCCcee-e-cCCHHHhhcCCCEEEECCC
Confidence 58999999999999999988876543 666 6676542232221 111111011111 1 1133444469999999863
No 377
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=96.62 E-value=0.0087 Score=52.07 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus 21 ~~~VlviG~-GglGs~ia~~La~~Gv-~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGA-GGLGSPAALYLAGAGV-GTIVIVDDDH 55 (202)
T ss_pred CCCEEEECC-CHHHHHHHHHHHHcCC-CeEEEecCCE
Confidence 358999998 9999999999999984 6999999874
No 378
>PLN02712 arogenate dehydrogenase
Probab=96.62 E-value=0.017 Score=59.14 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=46.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhC-CCCEEEEcc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALT-GMDLVIIPA 117 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~-~ADiVIita 117 (279)
.+++||+|||. |.+|.+++..|...|. +|+.+|.+.....+.++ . +.. .+++.+.+. ++|+||++.
T Consensus 367 ~~~~kIgIIGl-G~mG~slA~~L~~~G~--~V~~~dr~~~~~~a~~~---G----v~~---~~~~~el~~~~aDvVILav 433 (667)
T PLN02712 367 GSKLKIAIVGF-GNFGQFLAKTMVKQGH--TVLAYSRSDYSDEAQKL---G----VSY---FSDADDLCEEHPEVILLCT 433 (667)
T ss_pred CCCCEEEEEec-CHHHHHHHHHHHHCcC--EEEEEECChHHHHHHHc---C----CeE---eCCHHHHHhcCCCEEEECC
Confidence 45679999998 9999999999998886 89999987521111111 1 111 135556565 599999986
No 379
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.62 E-value=0.017 Score=50.13 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.++|.|+||+|.+|+.++..|+..|. +|+++++++
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~--~V~~~~r~~ 39 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA--QVCINSRNE 39 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 35899999999999999999999998 999999876
No 380
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.61 E-value=0.023 Score=49.83 Aligned_cols=34 Identities=35% Similarity=0.497 Sum_probs=30.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.||+|+|+ |-+|+.++..|+..|. .++.++|.+.
T Consensus 29 ~~V~ViG~-GglGs~ia~~La~~Gv-g~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGA-GGLGSNIAVALARSGV-GNLKLVDFDV 62 (212)
T ss_pred CCEEEECc-CHHHHHHHHHHHHcCC-CeEEEEeCCE
Confidence 48999999 9999999999999986 5899999884
No 381
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=96.60 E-value=0.015 Score=57.45 Aligned_cols=97 Identities=15% Similarity=0.158 Sum_probs=59.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcc----cCCCeEEEEeCCCCHHhhhCC---CCE
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHM----DTGAVVRGFLGQPQLENALTG---MDL 112 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~----~~~~~v~~~~~~~d~~eal~~---ADi 112 (279)
..++|++||- |.+|+++|..|+..|+ +|.++|++..+ +.++.+. .. ..+.. ..++.+..+. +|+
T Consensus 5 ~~~~IG~IGL-G~MG~~mA~nL~~~G~--~V~V~NRt~~k--~~~l~~~~~~~Ga-~~~~~---a~s~~e~v~~l~~~dv 75 (493)
T PLN02350 5 ALSRIGLAGL-AVMGQNLALNIAEKGF--PISVYNRTTSK--VDETVERAKKEGN-LPLYG---FKDPEDFVLSIQKPRS 75 (493)
T ss_pred CCCCEEEEee-HHHHHHHHHHHHhCCC--eEEEECCCHHH--HHHHHHhhhhcCC-ccccc---CCCHHHHHhcCCCCCE
Confidence 3458999998 9999999999999998 99999987522 2222221 11 11111 2345555554 999
Q ss_pred EEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCC
Q 023671 113 VIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISNP 160 (279)
Q Consensus 113 VIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNP 160 (279)
||++...+ +.+++++..+... .|+.++|-.||-
T Consensus 76 Ii~~v~~~---------------~aV~~Vi~gl~~~l~~G~iiID~sT~ 109 (493)
T PLN02350 76 VIILVKAG---------------APVDQTIKALSEYMEPGDCIIDGGNE 109 (493)
T ss_pred EEEECCCc---------------HHHHHHHHHHHhhcCCCCEEEECCCC
Confidence 99985321 2233333344443 366677766653
No 382
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.60 E-value=0.02 Score=55.34 Aligned_cols=91 Identities=19% Similarity=0.141 Sum_probs=60.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
.+..+|+|+|+ |.+|..++..+...|. +|+.+|+++.+ ..+..+. . ... +.+++++++|+||.+.
T Consensus 200 l~GktVvViG~-G~IG~~va~~ak~~Ga--~ViV~d~d~~R~~~A~~~G-----~--~~~----~~~e~v~~aDVVI~at 265 (413)
T cd00401 200 IAGKVAVVAGY-GDVGKGCAQSLRGQGA--RVIVTEVDPICALQAAMEG-----Y--EVM----TMEEAVKEGDIFVTTT 265 (413)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEECChhhHHHHHhcC-----C--EEc----cHHHHHcCCCEEEECC
Confidence 45679999999 9999999999998887 89999998622 2222211 1 111 2357789999999987
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP 160 (279)
|.+ .++.. ..+....|.+++++++.+
T Consensus 266 G~~---------------~~i~~--~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 266 GNK---------------DIITG--EHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCH---------------HHHHH--HHHhcCCCCcEEEEeCCC
Confidence 532 11211 113333478899888865
No 383
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.59 E-value=0.15 Score=45.17 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 75 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~ 75 (279)
.+.+++.|+||++.+|..++..|+..|. +|++.+.
T Consensus 6 l~~k~vlItGas~gIG~~ia~~l~~~G~--~v~~~~~ 40 (260)
T PRK08416 6 MKGKTLVISGGTRGIGKAIVYEFAQSGV--NIAFTYN 40 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEcC
Confidence 3456899999999999999999999997 8888754
No 384
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=96.59 E-value=0.028 Score=49.12 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEe
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYD 74 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D 74 (279)
+.+.|+|++|.+|..++..|+..|. ++++..
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~--~vv~~~ 34 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGF--KVVAGC 34 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCC--EEEEEc
Confidence 4689999999999999999999997 777754
No 385
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.59 E-value=0.011 Score=54.34 Aligned_cols=97 Identities=21% Similarity=0.231 Sum_probs=61.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
....+|+|+|+ |.+|..++..|...|. +|.++|+++.. ...+.... ..... ..++.+.++++|+||.+..
T Consensus 149 l~gk~v~IiG~-G~iG~avA~~L~~~G~--~V~v~~R~~~~--~~~~~~~g----~~~~~-~~~l~~~l~~aDiVint~P 218 (287)
T TIGR02853 149 IHGSNVMVLGF-GRTGMTIARTFSALGA--RVFVGARSSAD--LARITEMG----LIPFP-LNKLEEKVAEIDIVINTIP 218 (287)
T ss_pred CCCCEEEEEcC-hHHHHHHHHHHHHCCC--EEEEEeCCHHH--HHHHHHCC----Ceeec-HHHHHHHhccCCEEEECCC
Confidence 34569999999 9999999999998886 99999987521 11111111 11111 1246677899999999863
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe-cCCCCc
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNS 163 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~-TNPvd~ 163 (279)
.. ++ + .+ .+....|+++++.+ ++|-.+
T Consensus 219 ~~---------ii--~----~~---~l~~~k~~aliIDlas~Pg~t 246 (287)
T TIGR02853 219 AL---------VL--T----AD---VLSKLPKHAVIIDLASKPGGT 246 (287)
T ss_pred hH---------Hh--C----HH---HHhcCCCCeEEEEeCcCCCCC
Confidence 21 11 1 12 23333467888866 678653
No 386
>PRK06123 short chain dehydrogenase; Provisional
Probab=96.56 E-value=0.038 Score=48.28 Aligned_cols=34 Identities=29% Similarity=0.312 Sum_probs=28.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+.|+||+|.+|++++..|+..|. ++++.+.+.
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~G~--~vv~~~~~~ 36 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAERGY--AVCLNYLRN 36 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC--eEEEecCCC
Confidence 3688999999999999999999887 788877543
No 387
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.55 E-value=0.01 Score=56.39 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=53.5
Q ss_pred hccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCC
Q 023671 33 CRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMD 111 (279)
Q Consensus 33 ~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~AD 111 (279)
.+..+..++.||.|+|+ |.+|...+..+...|. +|..+|++..+. ..+.... ...+.. .....++.+.++++|
T Consensus 159 ~~~~~~l~~~~VlViGa-G~vG~~aa~~a~~lGa--~V~v~d~~~~~~--~~l~~~~-g~~v~~~~~~~~~l~~~l~~aD 232 (370)
T TIGR00518 159 LGGVPGVEPGDVTIIGG-GVVGTNAAKMANGLGA--TVTILDINIDRL--RQLDAEF-GGRIHTRYSNAYEIEDAVKRAD 232 (370)
T ss_pred ecCCCCCCCceEEEEcC-CHHHHHHHHHHHHCCC--eEEEEECCHHHH--HHHHHhc-CceeEeccCCHHHHHHHHccCC
Confidence 34444556779999999 9999999999998886 899999875211 1111111 011111 111124567789999
Q ss_pred EEEEccCCC
Q 023671 112 LVIIPAGVP 120 (279)
Q Consensus 112 iVIitag~~ 120 (279)
+||.+++.+
T Consensus 233 vVI~a~~~~ 241 (370)
T TIGR00518 233 LLIGAVLIP 241 (370)
T ss_pred EEEEccccC
Confidence 999998664
No 388
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=96.54 E-value=0.02 Score=50.16 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.+++.|+||+|.+|+.++..|+.+|+ +++++|.+.
T Consensus 8 ~k~vlItGas~~iG~~la~~l~~~G~--~v~~~~~~~ 42 (252)
T PRK08220 8 GKTVWVTGAAQGIGYAVALAFVEAGA--KVIGFDQAF 42 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEecch
Confidence 45899999999999999999999998 999999865
No 389
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=96.53 E-value=0.0085 Score=54.57 Aligned_cols=70 Identities=24% Similarity=0.222 Sum_probs=45.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhC--CCCcEEE-EEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKIN--PLVSVLH-LYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~--~~~~ev~-L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi 115 (279)
++++||+|||. |.+|..++..|... ++ +|+ ++|.++.+ +.++....... .. .+++++.+.++|+|++
T Consensus 4 m~~irIGIIG~-G~IG~~~a~~L~~~~~~~--el~aV~dr~~~~--a~~~a~~~g~~--~~---~~~~eell~~~D~Vvi 73 (271)
T PRK13302 4 RPELRVAIAGL-GAIGKAIAQALDRGLPGL--TLSAVAVRDPQR--HADFIWGLRRP--PP---VVPLDQLATHADIVVE 73 (271)
T ss_pred CCeeEEEEECc-cHHHHHHHHHHHhcCCCe--EEEEEECCCHHH--HHHHHHhcCCC--cc---cCCHHHHhcCCCEEEE
Confidence 45679999998 99999999888763 34 654 77876521 22222111001 11 1356777889999999
Q ss_pred ccC
Q 023671 116 PAG 118 (279)
Q Consensus 116 tag 118 (279)
+++
T Consensus 74 ~tp 76 (271)
T PRK13302 74 AAP 76 (271)
T ss_pred CCC
Confidence 975
No 390
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.52 E-value=0.024 Score=51.06 Aligned_cols=110 Identities=19% Similarity=0.240 Sum_probs=58.8
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh------hCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA------LTGM 110 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------l~~A 110 (279)
.+.|+|| |.+|..++..|. .|. +|++.|+++. .....++... ..++..+. .-+| .++. +...
T Consensus 4 ~~lItGa-~gIG~~la~~l~-~G~--~Vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~i 77 (275)
T PRK06940 4 VVVVIGA-GGIGQAIARRVG-AGK--KVLLADYNEENLEAAAKTLREA--GFDVSTQEVDVSSRESVKALAATAQTLGPV 77 (275)
T ss_pred EEEEECC-ChHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhc--CCeEEEEEeecCCHHHHHHHHHHHHhcCCC
Confidence 4556676 899999999885 676 9999998752 2222233221 11222111 1112 1112 2368
Q ss_pred CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHh-CCCceEEEecC
Q 023671 111 DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKC-CPNATVNLISN 159 (279)
Q Consensus 111 DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TN 159 (279)
|++|++||.... ..+-.+.+..|+.....+++.+.+. .+++.+++++.
T Consensus 78 d~li~nAG~~~~-~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS 126 (275)
T PRK06940 78 TGLVHTAGVSPS-QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIAS 126 (275)
T ss_pred CEEEECCCcCCc-hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEe
Confidence 999999997522 2233455667765555554444433 12333444443
No 391
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=96.51 E-value=0.0079 Score=57.48 Aligned_cols=77 Identities=13% Similarity=0.162 Sum_probs=46.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhccc-CCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMD-TGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~-~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
.+++||+|+||+|.+|..+...|...+. .||.++..++..|+...-.+.. .......+. ..+ .+.++++|+||++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~-~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~-~~~-~~~~~~~DvVf~Al 112 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPD-FEITVMTADRKAGQSFGSVFPHLITQDLPNLV-AVK-DADFSDVDAVFCCL 112 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCC-CeEEEEEChhhcCCCchhhCccccCcccccee-cCC-HHHhcCCCEEEEcC
Confidence 4667999999999999999998888853 3888887654333221111100 000111011 112 23478999999976
Q ss_pred C
Q 023671 118 G 118 (279)
Q Consensus 118 g 118 (279)
+
T Consensus 113 p 113 (381)
T PLN02968 113 P 113 (381)
T ss_pred C
Confidence 4
No 392
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.49 E-value=0.025 Score=52.65 Aligned_cols=66 Identities=20% Similarity=0.196 Sum_probs=44.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+.+||+|||+ |.+|.+++..|...|+ ++++.+....... ..+.... +.. . +..+++++||+|+++.
T Consensus 2 ~~kkIgiIG~-G~mG~AiA~~L~~sG~--~Viv~~~~~~~~~-~~a~~~G----v~~---~-s~~ea~~~ADiVvLaV 67 (314)
T TIGR00465 2 KGKTVAIIGY-GSQGHAQALNLRDSGL--NVIVGLRKGGASW-KKATEDG----FKV---G-TVEEAIPQADLIMNLL 67 (314)
T ss_pred CcCEEEEEeE-cHHHHHHHHHHHHCCC--eEEEEECcChhhH-HHHHHCC----CEE---C-CHHHHHhcCCEEEEeC
Confidence 3469999998 9999999999999987 6766554331111 1111111 121 1 3567889999999986
No 393
>PRK08177 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.016 Score=50.32 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=31.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+++.|+||+|.+|+.++..|+..|. +|+++|++.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~--~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW--QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC--EEEEEeCCC
Confidence 4799999999999999999999997 999999876
No 394
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.49 E-value=0.0027 Score=60.32 Aligned_cols=71 Identities=25% Similarity=0.322 Sum_probs=44.1
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch--hHHhhhhcccCCCeEEE--EeC--CCCHHhhhCCCCEEEEcc
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP--GVTADISHMDTGAVVRG--FLG--QPQLENALTGMDLVIIPA 117 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~--g~~~DL~~~~~~~~v~~--~~~--~~d~~eal~~ADiVIita 117 (279)
|.|+|+ |.+|+.++..|++.+...+|++.|++..+ .....+ . ..++.. ... ..++.+.++++|+||.++
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~-~---~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~ 75 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKL-L---GDRVEAVQVDVNDPESLAELLRGCDVVINCA 75 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT---T---TTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhc-c---ccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence 789999 99999999999988866699999998622 222222 1 112222 111 112556789999999998
Q ss_pred CC
Q 023671 118 GV 119 (279)
Q Consensus 118 g~ 119 (279)
|.
T Consensus 76 gp 77 (386)
T PF03435_consen 76 GP 77 (386)
T ss_dssp SG
T ss_pred cc
Confidence 64
No 395
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=96.45 E-value=0.012 Score=58.44 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=47.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
..++|+|+|. |.+|+.+|..|...|. +|+.||.........++. +.. .+++++.+++||+|+++..
T Consensus 137 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~g-------~~~---~~~l~ell~~aDvV~l~lP 202 (525)
T TIGR01327 137 YGKTLGVIGL-GRIGSIVAKRAKAFGM--KVLAYDPYISPERAEQLG-------VEL---VDDLDELLARADFITVHTP 202 (525)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhcC-------CEE---cCCHHHHHhhCCEEEEccC
Confidence 4569999998 9999999999988887 999999753221222111 111 1357888999999999864
No 396
>PRK07578 short chain dehydrogenase; Provisional
Probab=96.45 E-value=0.037 Score=47.00 Aligned_cols=104 Identities=20% Similarity=0.193 Sum_probs=58.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGVPR 121 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~~~ 121 (279)
|++.|+||+|.+|..++..|..+ . +|++.+++.. ....|+.+... ++ ...+.+...|++|.++|...
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~--~vi~~~r~~~-~~~~D~~~~~~---~~------~~~~~~~~id~lv~~ag~~~ 67 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-H--EVITAGRSSG-DVQVDITDPAS---IR------ALFEKVGKVDAVVSAAGKVH 67 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-C--cEEEEecCCC-ceEecCCChHH---HH------HHHHhcCCCCEEEECCCCCC
Confidence 47999999999999999999877 4 8999987541 11123332210 00 01122347899999998643
Q ss_pred CC---CCchhh---HHHhhHHHHHHHHHHHHHh-CCCceEEEec
Q 023671 122 KP---GMTRDD---LFNINAGIVRTLCEGIAKC-CPNATVNLIS 158 (279)
Q Consensus 122 k~---g~~r~d---~~~~N~~i~~~i~~~I~~~-~p~a~viv~T 158 (279)
.. ..+..+ .+..|+.....+.+...++ .+.+.++++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 111 (199)
T PRK07578 68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTS 111 (199)
T ss_pred CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEc
Confidence 11 122222 2344554444444443332 1345555555
No 397
>PRK07985 oxidoreductase; Provisional
Probab=96.45 E-value=0.065 Score=48.84 Aligned_cols=118 Identities=18% Similarity=0.135 Sum_probs=65.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--h-hHHhhhhcccCCCeEEEEe-CCCCH----------H
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--P-GVTADISHMDTGAVVRGFL-GQPQL----------E 104 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~-g~~~DL~~~~~~~~v~~~~-~~~d~----------~ 104 (279)
.+.+++.|+||+|.+|.+++..|+..|. +|++.+.+.. . ....++.... ...+..+. ..+|. .
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~--~Vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~ 123 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGA--DVAISYLPVEEEDAQDVKKIIEEC-GRKAVLLPGDLSDEKFARSLVHEAH 123 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCC--EEEEecCCcchhhHHHHHHHHHHc-CCeEEEEEccCCCHHHHHHHHHHHH
Confidence 3446899999999999999999999998 8998876531 1 1111111111 11222111 11221 1
Q ss_pred hhhCCCCEEEEccCCCCC--C--CCch---hhHHHhhHHHHHHHHHHHHHhC-CCceEEEecC
Q 023671 105 NALTGMDLVIIPAGVPRK--P--GMTR---DDLFNINAGIVRTLCEGIAKCC-PNATVNLISN 159 (279)
Q Consensus 105 eal~~ADiVIitag~~~k--~--g~~r---~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TN 159 (279)
+.+...|++|+.+|.... + ..+. ...+..|+...-.+++.+.+.- ..+.||++|.
T Consensus 124 ~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS 186 (294)
T PRK07985 124 KALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSS 186 (294)
T ss_pred HHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECC
Confidence 223467999999986321 1 1222 2345667655555555544331 3456666654
No 398
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.44 E-value=0.17 Score=45.58 Aligned_cols=68 Identities=25% Similarity=0.264 Sum_probs=43.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
++||+|+|++|.+|+.++..+...+-+.-+.++|.+....... . ...+.. .+|+++.++++|+||.+.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~--~----~~~i~~---~~dl~~ll~~~DvVid~t 68 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQ--G----ALGVAI---TDDLEAVLADADVLIDFT 68 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc--C----CCCccc---cCCHHHhccCCCEEEECC
Confidence 4699999988999999998777654333344578765211111 1 111221 347777788999999765
No 399
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=96.44 E-value=0.037 Score=48.19 Aligned_cols=114 Identities=14% Similarity=0.164 Sum_probs=62.2
Q ss_pred EEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCCH---Hhh-------hCC
Q 023671 44 VAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQL---ENA-------LTG 109 (279)
Q Consensus 44 I~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d~---~ea-------l~~ 109 (279)
|.|+||+|.+|.+++..|+++|. ++++++... ......++.+.. .++..+. ..+|. .++ +..
T Consensus 1 vlItGas~giG~~~a~~l~~~G~--~v~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 76 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGF--EICVHYHSGRSDAESVVSAIQAQG--GNARLLQFDVADRVACRTLLEADIAEHGA 76 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCCHHHHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46999999999999999999997 888887643 122222333221 1222211 11121 111 235
Q ss_pred CCEEEEccCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHH----HHhCCCceEEEecCCC
Q 023671 110 MDLVIIPAGVPRKPG---MT---RDDLFNINAGIVRTLCEGI----AKCCPNATVNLISNPV 161 (279)
Q Consensus 110 ADiVIitag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I----~~~~p~a~viv~TNPv 161 (279)
.|.+|.++|...... .+ -...+..|+.....+.+.+ .+..+.+.++++|.+.
T Consensus 77 i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~ 138 (239)
T TIGR01831 77 YYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVS 138 (239)
T ss_pred CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchh
Confidence 689999998643221 12 2234566665544444432 2223456666666543
No 400
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.42 E-value=0.026 Score=54.51 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=72.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh---HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG---VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g---~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit 116 (279)
+.++|.|+|+ |.+|..+|..|+..|+ +|.++|.+.... ...++... .++.+.+. ...+...++|+||.+
T Consensus 4 ~~k~v~iiG~-g~~G~~~A~~l~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----~~~~~~~~-~~~~~~~~~d~vv~~ 75 (450)
T PRK14106 4 KGKKVLVVGA-GVSGLALAKFLKKLGA--KVILTDEKEEDQLKEALEELGEL----GIELVLGE-YPEEFLEGVDLVVVS 75 (450)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchHHHHHHHHHHHhc----CCEEEeCC-cchhHhhcCCEEEEC
Confidence 3469999999 8899999999999998 999999975211 12223211 12222211 112446789999999
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHH
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKK 174 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~ 174 (279)
+|.+.... .....-+.+++++.......... + ..+|-+|-..+ ..+.++.+++..
T Consensus 76 ~g~~~~~~-~~~~a~~~~i~~~~~~~~~~~~~-~-~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 76 PGVPLDSP-PVVQAHKKGIEVIGEVELAYRFS-K-APIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CCCCCCCH-HHHHHHHCCCcEEeHHHHHHhhc-C-CCEEEEeCCCchHHHHHHHHHHHHH
Confidence 88642211 11111234566665554433322 2 34555655554 555666666654
No 401
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.41 E-value=0.057 Score=49.67 Aligned_cols=117 Identities=16% Similarity=0.302 Sum_probs=75.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC----------HHh
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ----------LEN 105 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d----------~~e 105 (279)
.+...|.|+||++-+|..+|+.+++++- .++|.|+++ ....+..+.+.. +++.+. .-++ .++
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~--~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~ 110 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA--KLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKK 110 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC--eEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHH
Confidence 5566899999978899999999999997 999999998 233333333321 122111 1112 244
Q ss_pred hhCCCCEEEEccCCC-CCCC--Cchhh---HHHhh----HHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671 106 ALTGMDLVIIPAGVP-RKPG--MTRDD---LFNIN----AGIVRTLCEGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 106 al~~ADiVIitag~~-~k~g--~~r~d---~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPv 161 (279)
...+.|++|..||+. .++- .++.+ .++.| ..+++.+.+.+.+. .++.|+.++.-.
T Consensus 111 e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~-~~GHIV~IaS~a 175 (300)
T KOG1201|consen 111 EVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLEN-NNGHIVTIASVA 175 (300)
T ss_pred hcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhc-CCceEEEehhhh
Confidence 567999999999974 3332 22222 23334 46788999999875 467776665433
No 402
>PLN02494 adenosylhomocysteinase
Probab=96.41 E-value=0.023 Score=55.60 Aligned_cols=94 Identities=22% Similarity=0.168 Sum_probs=62.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCch-hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTP-GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~-g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
...++|+|+|. |.+|..++..+...|. +|+.+|+++.+ ..+.+. .. .+ .+++++++.+|+||.+.
T Consensus 252 LaGKtVvViGy-G~IGr~vA~~aka~Ga--~VIV~e~dp~r~~eA~~~--G~---~v------v~leEal~~ADVVI~tT 317 (477)
T PLN02494 252 IAGKVAVICGY-GDVGKGCAAAMKAAGA--RVIVTEIDPICALQALME--GY---QV------LTLEDVVSEADIFVTTT 317 (477)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhHHHHhc--CC---ee------ccHHHHHhhCCEEEECC
Confidence 45679999999 9999999999988887 89999987621 222211 11 11 13567899999999876
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCc
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNS 163 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~ 163 (279)
|.. .++. .+.+....|.+++++++-+-+.
T Consensus 318 Gt~---------------~vI~--~e~L~~MK~GAiLiNvGr~~~e 346 (477)
T PLN02494 318 GNK---------------DIIM--VDHMRKMKNNAIVCNIGHFDNE 346 (477)
T ss_pred CCc---------------cchH--HHHHhcCCCCCEEEEcCCCCCc
Confidence 532 1110 2233344588999999876433
No 403
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.41 E-value=0.012 Score=55.11 Aligned_cols=71 Identities=21% Similarity=0.421 Sum_probs=46.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
++||+|+||+|.+|..++..|...++ ..||..+-.++..++..++.. ..+.... . + ..+++++|+||++.|
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g----~~i~v~d-~-~-~~~~~~vDvVf~A~g 72 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKG----KELKVED-L-T-TFDFSGVDIALFSAG 72 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCC----ceeEEee-C-C-HHHHcCCCEEEECCC
Confidence 46999999999999999999988654 347777755443333333221 2233211 1 2 245689999999875
No 404
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=96.39 E-value=0.013 Score=58.28 Aligned_cols=92 Identities=25% Similarity=0.320 Sum_probs=59.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
..++|+|+|. |.+|+.+|..+...|. +|+.||.........++ .+... ++++.++.||+|+++...
T Consensus 139 ~gktvgIiG~-G~IG~~vA~~l~~fG~--~V~~~d~~~~~~~~~~~-------g~~~~----~l~ell~~aDiV~l~lP~ 204 (526)
T PRK13581 139 YGKTLGIIGL-GRIGSEVAKRAKAFGM--KVIAYDPYISPERAAQL-------GVELV----SLDELLARADFITLHTPL 204 (526)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEECCCCChhHHHhc-------CCEEE----cHHHHHhhCCEEEEccCC
Confidence 4569999999 9999999999988887 99999975421111111 11211 467889999999998643
Q ss_pred CCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 120 PRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 120 ~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
.. .++ .++ | . +.+....|++++|+++
T Consensus 205 t~---~t~-~li--~----~---~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 205 TP---ETR-GLI--G----A---EELAKMKPGVRIINCA 230 (526)
T ss_pred Ch---Hhh-cCc--C----H---HHHhcCCCCeEEEECC
Confidence 21 111 111 1 1 2333334788888875
No 405
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.36 E-value=0.015 Score=54.62 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=50.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-----h------------h--H----HhhhhcccCCCeEEEE
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-----P------------G--V----TADISHMDTGAVVRGF 97 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-----~------------g--~----~~DL~~~~~~~~v~~~ 97 (279)
..||.|||+ |-+|++++..|+..|+ .+|.|+|.+.. . + + +..+........++.+
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGv-g~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~ 101 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGI-GKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV 101 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence 348999999 9999999999999985 69999998740 0 0 1 1122222223344443
Q ss_pred eC---CCCHHhhhCCCCEEEEcc
Q 023671 98 LG---QPQLENALTGMDLVIIPA 117 (279)
Q Consensus 98 ~~---~~d~~eal~~ADiVIita 117 (279)
.. ..++++.++++|+||.+.
T Consensus 102 ~~~~~~~~~~~~~~~~DlVid~~ 124 (338)
T PRK12475 102 VTDVTVEELEELVKEVDLIIDAT 124 (338)
T ss_pred eccCCHHHHHHHhcCCCEEEEcC
Confidence 21 123556789999999985
No 406
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.36 E-value=0.037 Score=50.74 Aligned_cols=80 Identities=26% Similarity=0.376 Sum_probs=50.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC---chhHHhhhhcccCCCeEEEEe-CCCC---HHhh-----
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN---TPGVTADISHMDTGAVVRGFL-GQPQ---LENA----- 106 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~---~~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea----- 106 (279)
.+.+++.|+||+|.+|..++..|+..|. +|++.|... .+..+.++... ..++..+. .-.| ..+.
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga--~Vv~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~Dv~d~~~~~~~~~~~~ 85 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA--TVVVNDVASALDASDVLDEIRAA--GAKAVAVAGDISQRATADELVATAV 85 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC--EEEEecCCchhHHHHHHHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999999997 899999754 12222333321 12222211 1112 1111
Q ss_pred -hCCCCEEEEccCCCCC
Q 023671 107 -LTGMDLVIIPAGVPRK 122 (279)
Q Consensus 107 -l~~ADiVIitag~~~k 122 (279)
+...|++|++||....
T Consensus 86 ~~g~iD~li~nAG~~~~ 102 (306)
T PRK07792 86 GLGGLDIVVNNAGITRD 102 (306)
T ss_pred HhCCCCEEEECCCCCCC
Confidence 2368999999997643
No 407
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=96.36 E-value=0.04 Score=44.82 Aligned_cols=33 Identities=24% Similarity=0.508 Sum_probs=29.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
||.|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv-~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGV-GKITLIDFDT 33 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCC-CEEEEEcCCC
Confidence 6899999 9999999999999996 6999999874
No 408
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=96.36 E-value=0.14 Score=45.64 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=28.3
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 76 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~ 76 (279)
.+.|+||+|.+|.+++..|+.+|. +|++.+.+
T Consensus 3 ~~lITGas~gIG~~~a~~l~~~G~--~V~~~~~~ 34 (267)
T TIGR02685 3 AAVVTGAAKRIGSSIAVALHQEGY--RVVLHYHR 34 (267)
T ss_pred EEEEeCCCCcHHHHHHHHHHhCCC--eEEEEcCC
Confidence 688999999999999999999998 88887643
No 409
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=96.34 E-value=0.065 Score=46.47 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=27.9
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 75 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~ 75 (279)
.+.|+||+|.+|..++..|+..|. ++++...
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~--~v~~~~r 32 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGY--RVAANCG 32 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCC--EEEEEeC
Confidence 578999999999999999999997 8888876
No 410
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.33 E-value=0.016 Score=50.29 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=51.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit 116 (279)
.+.++|+|||-+.-||..++.+|++++- .|.++|++.. ......+.|... ..+. .+.++.+.++.||+||.+
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~A--tVti~~~~~~~~~~~~~~~~hs~t--~~~~--~~~~l~~~~~~ADIVIsA 133 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGA--RVYSVDINGIQVFTRGESIRHEKH--HVTD--EEAMTLDCLSQSDVVITG 133 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCC--EEEEEecCcccccccccccccccc--cccc--hhhHHHHHhhhCCEEEEc
Confidence 4567999999999999999999998886 9999998651 111111222211 0000 011256778999999999
Q ss_pred cCCC
Q 023671 117 AGVP 120 (279)
Q Consensus 117 ag~~ 120 (279)
+|.+
T Consensus 134 vG~~ 137 (197)
T cd01079 134 VPSP 137 (197)
T ss_pred cCCC
Confidence 9866
No 411
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=96.33 E-value=0.018 Score=52.63 Aligned_cols=61 Identities=18% Similarity=0.293 Sum_probs=44.2
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
|||. |.+|..++..|...|+ +|.++|+++.. ..++.... ... +++..++++++|+||++..
T Consensus 1 ~IGl-G~mG~~mA~~L~~~G~--~V~v~dr~~~~--~~~l~~~g----~~~---~~s~~~~~~~advVil~vp 61 (288)
T TIGR01692 1 FIGL-GNMGGPMAANLLKAGH--PVRVFDLFPDA--VEEAVAAG----AQA---AASPAEAAEGADRVITMLP 61 (288)
T ss_pred CCcc-cHhHHHHHHHHHhCCC--eEEEEeCCHHH--HHHHHHcC----Cee---cCCHHHHHhcCCEEEEeCC
Confidence 5898 9999999999999998 99999987521 22222211 111 2356788999999999864
No 412
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.32 E-value=0.028 Score=49.94 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+++.|+||+|.+|..++..|+..|. +|+++|+++
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 40 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA--RVAVLERSA 40 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 346899999999999999999999998 899999875
No 413
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.31 E-value=0.037 Score=48.22 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=46.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
+.+||.|||+ |.||...+..|...|. +|.+++.+... ...++.+.. .+........ ++.+.++|+||.+.+
T Consensus 9 ~~k~vLVIGg-G~va~~ka~~Ll~~ga--~V~VIs~~~~~-~l~~l~~~~---~i~~~~~~~~-~~~l~~adlViaaT~ 79 (202)
T PRK06718 9 SNKRVVIVGG-GKVAGRRAITLLKYGA--HIVVISPELTE-NLVKLVEEG---KIRWKQKEFE-PSDIVDAFLVIAATN 79 (202)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCC--eEEEEcCCCCH-HHHHHHhCC---CEEEEecCCC-hhhcCCceEEEEcCC
Confidence 4569999999 9999999999998885 99999754321 222232221 1222111112 456899999888753
No 414
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.31 E-value=0.044 Score=52.94 Aligned_cols=118 Identities=20% Similarity=0.254 Sum_probs=66.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhh-------hCCCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGMD 111 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~ea-------l~~AD 111 (279)
+.+++.|+|++|.+|..++..|+..|. +|+++|.........++........+.. .....+..+. ....|
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga--~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id 286 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGA--HVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD 286 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC--EEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence 346899999999999999999999997 8999998542211122211110011111 0000111111 22589
Q ss_pred EEEEccCCCCCC---CCc---hhhHHHhhHHHHHHHHHHHHHh---CCCceEEEecC
Q 023671 112 LVIIPAGVPRKP---GMT---RDDLFNINAGIVRTLCEGIAKC---CPNATVNLISN 159 (279)
Q Consensus 112 iVIitag~~~k~---g~~---r~d~~~~N~~i~~~i~~~I~~~---~p~a~viv~TN 159 (279)
+||+++|..... ..+ -...+..|+.-...+.+.+... .+.+.|+++|.
T Consensus 287 ~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS 343 (450)
T PRK08261 287 IVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSS 343 (450)
T ss_pred EEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECC
Confidence 999999875321 112 1234566777666666666542 24466666653
No 415
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.28 E-value=0.023 Score=47.81 Aligned_cols=57 Identities=26% Similarity=0.442 Sum_probs=41.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.+.++|+|||.+..||..++.+|..++- .+.+.+.+ +.++++.++.||+||.++|
T Consensus 34 l~Gk~v~VvGrs~~VG~Pla~lL~~~~a--tVt~~h~~-----------------------T~~l~~~~~~ADIVVsa~G 88 (160)
T PF02882_consen 34 LEGKKVVVVGRSNIVGKPLAMLLLNKGA--TVTICHSK-----------------------TKNLQEITRRADIVVSAVG 88 (160)
T ss_dssp TTT-EEEEE-TTTTTHHHHHHHHHHTT---EEEEE-TT-----------------------SSSHHHHHTTSSEEEE-SS
T ss_pred CCCCEEEEECCcCCCChHHHHHHHhCCC--eEEeccCC-----------------------CCcccceeeeccEEeeeec
Confidence 4466999999988999999999998875 55555431 2356788999999999998
Q ss_pred CC
Q 023671 119 VP 120 (279)
Q Consensus 119 ~~ 120 (279)
.|
T Consensus 89 ~~ 90 (160)
T PF02882_consen 89 KP 90 (160)
T ss_dssp ST
T ss_pred cc
Confidence 65
No 416
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.28 E-value=0.013 Score=54.99 Aligned_cols=72 Identities=21% Similarity=0.392 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
+|+||+|+||+|.+|.-+...|..+++ ..+|..+-..+..|+...+.. ..+... .. + .++++++|+||++.+
T Consensus 3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~----~~l~~~-~~-~-~~~~~~vD~vFla~p 75 (336)
T PRK05671 3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAG----KNLRVR-EV-D-SFDFSQVQLAFFAAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCC----cceEEe-eC-C-hHHhcCCCEEEEcCC
Confidence 347999999999999999999986542 457777755443343333222 112221 11 2 234789999999864
No 417
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.27 E-value=0.021 Score=54.58 Aligned_cols=63 Identities=16% Similarity=0.195 Sum_probs=46.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++|+|||. |.||+.++..+..-|. +|..+|..... . ... .. ..++++.++.||+|++...
T Consensus 114 L~gktvGIIG~-G~IG~~vA~~l~a~G~--~V~~~dp~~~~---~--~~~-----~~----~~~L~ell~~sDiI~lh~P 176 (378)
T PRK15438 114 LHDRTVGIVGV-GNVGRRLQARLEALGI--KTLLCDPPRAD---R--GDE-----GD----FRSLDELVQEADILTFHTP 176 (378)
T ss_pred cCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--ccc-----cc----cCCHHHHHhhCCEEEEeCC
Confidence 45679999999 9999999999998888 99999963211 0 000 01 1257788899999998754
No 418
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.26 E-value=0.016 Score=55.95 Aligned_cols=105 Identities=17% Similarity=0.204 Sum_probs=65.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi 115 (279)
..+..+|+|+|+ |.+|..++..|...|. .+|.++|++.. ...+.++.. .. +. ..++.+++.++|+||.
T Consensus 177 ~l~~~~VlViGa-G~iG~~~a~~L~~~G~-~~V~v~~rs~~ra~~la~~~g~-----~~--i~-~~~l~~~l~~aDvVi~ 246 (417)
T TIGR01035 177 SLKGKKALLIGA-GEMGELVAKHLLRKGV-GKILIANRTYERAEDLAKELGG-----EA--VK-FEDLEEYLAEADIVIS 246 (417)
T ss_pred CccCCEEEEECC-hHHHHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHcCC-----eE--ee-HHHHHHHHhhCCEEEE
Confidence 345679999999 9999999999988773 48999998752 222222211 11 11 1356678899999999
Q ss_pred ccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhC-CCceEEEecCCCCchH
Q 023671 116 PAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCC-PNATVNLISNPVNSTV 165 (279)
Q Consensus 116 tag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~-p~a~viv~TNPvd~~t 165 (279)
+.+.+..- . -.+.++...... ...+++-+++|-|+=.
T Consensus 247 aT~s~~~i-i------------~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 247 STGAPHPI-V------------SKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred CCCCCCce-E------------cHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 87654211 0 112222222211 2357888899987753
No 419
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.26 E-value=0.033 Score=52.39 Aligned_cols=35 Identities=23% Similarity=0.291 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
..||.|+|+ |.+|+.++..|+..|. .+|.++|.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGv-g~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGV-GKVTIVDRDY 58 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCCc
Confidence 348999999 9999999999999985 6999999874
No 420
>PRK05599 hypothetical protein; Provisional
Probab=96.26 E-value=0.32 Score=42.85 Aligned_cols=116 Identities=13% Similarity=0.213 Sum_probs=64.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCC---H-------HhhhC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQ---L-------ENALT 108 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d---~-------~eal~ 108 (279)
|.+.|+||++-+|..++..|. +|. +|++.++++ ++..+.++..... ..+..+. .-.| . .+.+.
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~--~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 76 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGE--DVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQDLDTHRELVKQTQELAG 76 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCC--EEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCCHHHHHHHHHHHHHhcC
Confidence 358899999999999999988 465 899999876 3333344433211 1122111 0111 1 12234
Q ss_pred CCCEEEEccCCCCCCC---Cch---hhHHHhh----HHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671 109 GMDLVIIPAGVPRKPG---MTR---DDLFNIN----AGIVRTLCEGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 109 ~ADiVIitag~~~k~g---~~r---~d~~~~N----~~i~~~i~~~I~~~~p~a~viv~TNPv 161 (279)
..|++|+++|...... .+. .+....| +.+.+.+.+.+.+...++.|+++|.-.
T Consensus 77 ~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~ 139 (246)
T PRK05599 77 EISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIA 139 (246)
T ss_pred CCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 6899999998743211 111 1222233 334445556666544456777776543
No 421
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.16 Score=44.93 Aligned_cols=115 Identities=18% Similarity=0.186 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCCCH---H---hhhCCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQPQL---E---NALTGMD 111 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~d~---~---eal~~AD 111 (279)
.+++.|+|++|.+|..++..|+..|. +|++.|+++ ......++.... ..++..+. .-++. . +.+...|
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~--~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC--HLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC--EEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 46899999999999999999999987 999999875 222222233211 11122111 11121 1 1245799
Q ss_pred EEEEccCCCCC-C--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 112 LVIIPAGVPRK-P--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 112 iVIitag~~~k-~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
++|+++|.... + ..+. ...+..|+. +.+.+.+.+.+.. .+.++++|.
T Consensus 84 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~g~iv~iss 140 (259)
T PRK06125 84 ILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARG-SGVIVNVIG 140 (259)
T ss_pred EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CcEEEEecC
Confidence 99999986421 1 1121 223445544 4555555555433 345555543
No 422
>PRK08017 oxidoreductase; Provisional
Probab=96.24 E-value=0.019 Score=50.46 Aligned_cols=34 Identities=24% Similarity=0.155 Sum_probs=30.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
++|.|+||+|.+|.+++..|+++|. +|++++++.
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~--~v~~~~r~~ 36 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY--RVLAACRKP 36 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC--EEEEEeCCH
Confidence 3799999999999999999999987 899998865
No 423
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.23 E-value=0.02 Score=48.57 Aligned_cols=58 Identities=28% Similarity=0.446 Sum_probs=45.6
Q ss_pred CCCCCcEEEEEcCCCc-hHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEE
Q 023671 37 GGAAGFKVAILGAAGG-IGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVII 115 (279)
Q Consensus 37 ~~~~~~KI~IIGA~G~-VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIi 115 (279)
+....+||.|||+ |. +|..++..|...+. +|.+.+++. .++++.+++||+||.
T Consensus 40 ~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~--~V~v~~r~~-----------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAGKKVVVVGR-SNIVGKPLAALLLNRNA--TVTVCHSKT-----------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCCCEEEEECC-cHHHHHHHHHHHhhCCC--EEEEEECCc-----------------------hhHHHHHhhCCEEEE
Confidence 3456679999999 86 58889999988886 788887531 246678999999999
Q ss_pred ccCCC
Q 023671 116 PAGVP 120 (279)
Q Consensus 116 tag~~ 120 (279)
+.+.+
T Consensus 94 at~~~ 98 (168)
T cd01080 94 AVGKP 98 (168)
T ss_pred cCCCC
Confidence 98765
No 424
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=96.23 E-value=0.014 Score=55.05 Aligned_cols=71 Identities=23% Similarity=0.383 Sum_probs=46.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCC-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPL-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
++||+|+||+|.+|..+...|..+++ ..++..+...+..|+..+... ..+... ..+ .+++.++|+||++++
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~----~~~~v~--~~~-~~~~~~~D~vf~a~p 78 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEG----RDYTVE--ELT-EDSFDGVDIALFSAG 78 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecC----ceeEEE--eCC-HHHHcCCCEEEECCC
Confidence 46999999999999999988887553 457777755443333332211 122221 113 356799999999876
No 425
>PRK06483 dihydromonapterin reductase; Provisional
Probab=96.23 E-value=0.066 Score=46.60 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=31.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
++++.|+||+|.+|..++..|+.+|. +|++.|+++
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~--~V~~~~r~~ 36 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ--PVIVSYRTH 36 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC--eEEEEeCCc
Confidence 34789999999999999999999998 999999875
No 426
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=96.22 E-value=0.018 Score=53.77 Aligned_cols=71 Identities=15% Similarity=0.155 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
..+++|||+ |..|...+..+.....+.+|.++|++. ++..+.++.+. ...+.. ..+.++++++||+|+.+.
T Consensus 128 ~~~lgiiG~-G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~--g~~v~~---~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 128 SSVLGIIGA-GRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDY--EVPVRA---ATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhh--CCcEEE---eCCHHHHhccCCEEEEec
Confidence 458999998 999998776665544578999999986 33333444322 223333 246789999999999875
No 427
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=96.22 E-value=0.025 Score=52.83 Aligned_cols=93 Identities=20% Similarity=0.143 Sum_probs=57.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
...++|+|||. |.+|..++..+. .-|. +|+.+|.........++ .++. .++++.++.||+|++..
T Consensus 143 L~gktvGIiG~-G~IG~~va~~l~~~fgm--~V~~~~~~~~~~~~~~~-------~~~~----~~l~ell~~sDvv~lh~ 208 (323)
T PRK15409 143 VHHKTLGIVGM-GRIGMALAQRAHFGFNM--PILYNARRHHKEAEERF-------NARY----CDLDTLLQESDFVCIIL 208 (323)
T ss_pred CCCCEEEEEcc-cHHHHHHHHHHHhcCCC--EEEEECCCCchhhHHhc-------CcEe----cCHHHHHHhCCEEEEeC
Confidence 34679999998 999999998886 5566 88888865311111111 1111 25788899999999986
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
... + +++ .++ | ++ .+..-.|++++|+++
T Consensus 209 plt--~-~T~-~li--~----~~---~l~~mk~ga~lIN~a 236 (323)
T PRK15409 209 PLT--D-ETH-HLF--G----AE---QFAKMKSSAIFINAG 236 (323)
T ss_pred CCC--h-HHh-hcc--C----HH---HHhcCCCCeEEEECC
Confidence 422 1 111 111 1 12 333345899999976
No 428
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=96.19 E-value=0.031 Score=54.75 Aligned_cols=91 Identities=20% Similarity=0.193 Sum_probs=61.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
...++|+|+|. |.+|..+|..+...|. +|..+|+++... .+.. +. .+. .+++++++.||+||.+.
T Consensus 252 LaGKtVgVIG~-G~IGr~vA~rL~a~Ga--~ViV~e~dp~~a~~A~~--~G-----~~~----~~leell~~ADIVI~at 317 (476)
T PTZ00075 252 IAGKTVVVCGY-GDVGKGCAQALRGFGA--RVVVTEIDPICALQAAM--EG-----YQV----VTLEDVVETADIFVTAT 317 (476)
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhHHHHHh--cC-----cee----ccHHHHHhcCCEEEECC
Confidence 45679999999 9999999999998887 899998876322 1111 11 111 14678899999999986
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCC
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNP 160 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNP 160 (279)
|.+ + ++. .+.+....|.+++++++-.
T Consensus 318 Gt~---~------------iI~--~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 318 GNK---D------------IIT--LEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred Ccc---c------------ccC--HHHHhccCCCcEEEEcCCC
Confidence 532 1 111 1233344588899988755
No 429
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.17 E-value=0.019 Score=53.10 Aligned_cols=57 Identities=18% Similarity=0.335 Sum_probs=46.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++|+|||.+|.||..++..|...|. .|.+++... .++.+.++.||+||.+.|
T Consensus 157 l~Gk~V~vIG~s~ivG~PmA~~L~~~ga--tVtv~~~~t-----------------------~~l~e~~~~ADIVIsavg 211 (301)
T PRK14194 157 LTGKHAVVIGRSNIVGKPMAALLLQAHC--SVTVVHSRS-----------------------TDAKALCRQADIVVAAVG 211 (301)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC--EEEEECCCC-----------------------CCHHHHHhcCCEEEEecC
Confidence 4467999999966999999999999997 888886431 145678899999999987
Q ss_pred CC
Q 023671 119 VP 120 (279)
Q Consensus 119 ~~ 120 (279)
.+
T Consensus 212 ~~ 213 (301)
T PRK14194 212 RP 213 (301)
T ss_pred Ch
Confidence 65
No 430
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=96.17 E-value=0.023 Score=54.37 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=46.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++|+|||. |.||+.++..+...|. +|+.+|..... . . . ... ..++++.+++||+|++...
T Consensus 114 l~gktvGIIG~-G~IG~~va~~l~a~G~--~V~~~Dp~~~~---~--~--~---~~~----~~~l~ell~~aDiV~lh~P 176 (381)
T PRK00257 114 LAERTYGVVGA-GHVGGRLVRVLRGLGW--KVLVCDPPRQE---A--E--G---DGD----FVSLERILEECDVISLHTP 176 (381)
T ss_pred cCcCEEEEECC-CHHHHHHHHHHHHCCC--EEEEECCcccc---c--c--c---Ccc----ccCHHHHHhhCCEEEEeCc
Confidence 34569999999 9999999999998888 99999974311 0 0 0 011 1257788899999999864
No 431
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.15 E-value=0.027 Score=52.62 Aligned_cols=73 Identities=15% Similarity=0.240 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.++|+|||+ |..|...+..+....-+.+|.+++++. ++..+.++.+.. ...+.. .+|+++++++||+||.+..
T Consensus 132 ~~~v~IiGa-G~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~-g~~v~~---~~d~~~al~~aDiVi~aT~ 206 (330)
T PRK08291 132 ASRAAVIGA-GEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAEL-GIPVTV---ARDVHEAVAGADIIVTTTP 206 (330)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhcc-CceEEE---eCCHHHHHccCCEEEEeeC
Confidence 358999998 999998877776533367999999876 333334443221 122322 2467889999999988754
No 432
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.14 E-value=0.015 Score=54.79 Aligned_cols=72 Identities=24% Similarity=0.446 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCC-C-CcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINP-L-VSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~-~-~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+.+||+|+||+|.+|.-+...|...+ . +.+|.++...+..|+...+... .+.... .| .+.++++|+||+++
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~----~l~v~~--~~-~~~~~~~Divf~a~ 76 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGR----EIIIQE--AK-INSFEGVDIAFFSA 76 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCc----ceEEEe--CC-HHHhcCCCEEEECC
Confidence 34699999999999999999888544 3 3468888765544544433221 233221 23 35678999999987
Q ss_pred C
Q 023671 118 G 118 (279)
Q Consensus 118 g 118 (279)
+
T Consensus 77 ~ 77 (347)
T PRK06728 77 G 77 (347)
T ss_pred C
Confidence 5
No 433
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=96.14 E-value=0.097 Score=48.86 Aligned_cols=56 Identities=7% Similarity=0.030 Sum_probs=38.7
Q ss_pred hHHHHHHHHHhCCCCcEEEEEeCCCc---hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 53 IGQPLAMLMKINPLVSVLHLYDVVNT---PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 53 VG~~la~~L~~~~~~~ev~L~D~~~~---~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
-|+.+|..|+..|+ +|.++|+++. ......+.+... .. .++..++.+++|+||.+.
T Consensus 31 gGspMArnLlkAGh--eV~V~Drnrsa~e~e~~e~LaeaGA----~~---AaS~aEAAa~ADVVIL~L 89 (341)
T TIGR01724 31 GGSRMAIEFAMAGH--DVVLAEPNREFMSDDLWKKVEDAGV----KV---VSDDKEAAKHGEIHVLFT 89 (341)
T ss_pred CHHHHHHHHHHCCC--EEEEEeCChhhhhhhhhHHHHHCCC----ee---cCCHHHHHhCCCEEEEec
Confidence 37899999999998 9999998752 122233443321 11 234678899999999986
No 434
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.14 E-value=0.016 Score=50.31 Aligned_cols=39 Identities=26% Similarity=0.285 Sum_probs=34.1
Q ss_pred CCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 36 KGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 36 ~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
....+.++|+|+|. |.+|++++..|...|. +|+.+|+++
T Consensus 23 ~~~l~gk~v~I~G~-G~vG~~~A~~L~~~G~--~Vvv~D~~~ 61 (200)
T cd01075 23 TDSLEGKTVAVQGL-GKVGYKLAEHLLEEGA--KLIVADINE 61 (200)
T ss_pred CCCCCCCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEcCCH
Confidence 34456689999999 9999999999999998 999999875
No 435
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.14 E-value=0.069 Score=52.19 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=69.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-h--hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~--g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
.++|.|+|+ |.+|..+|..|...|. +|.++|..+. . .....+... .+....+. +. +...++|+||++.
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G~--~V~~~d~~~~~~~~~~~~~l~~~----gv~~~~~~-~~-~~~~~~D~Vv~s~ 86 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELGA--RVTVVDDGDDERHRALAAILEAL----GATVRLGP-GP-TLPEDTDLVVTSP 86 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC--EEEEEeCCchhhhHHHHHHHHHc----CCEEEECC-Cc-cccCCCCEEEECC
Confidence 448999999 9999999999999898 8999996541 1 111223322 12222222 11 2356799999999
Q ss_pred CCCCCCCCchhhHHHhhHHHHHH--HHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHH
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRT--LCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKK 174 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~--i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~ 174 (279)
|++..... ....-..+++++.+ ++..+.+...+..+|-+|-..+ ..+.+++.++..
T Consensus 87 Gi~~~~~~-~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~ 146 (480)
T PRK01438 87 GWRPDAPL-LAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA 146 (480)
T ss_pred CcCCCCHH-HHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence 87633211 11112334455433 2222221112334555665555 555666666654
No 436
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.13 E-value=0.021 Score=53.23 Aligned_cols=73 Identities=10% Similarity=0.150 Sum_probs=48.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
..+++|||+ |..|...+..+....-+.+|.++|+++ +...+.++.+.. ...+..+ ++++++++++|+||.+-.
T Consensus 127 ~~~v~iiGa-G~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~-~~~~~~~---~~~~~~~~~aDiVi~aT~ 201 (325)
T PRK08618 127 AKTLCLIGT-GGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKF-NTEIYVV---NSADEAIEEADIIVTVTN 201 (325)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEccC
Confidence 458999998 999987776665443468999999986 233333343221 1233332 467789999999998754
No 437
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.13 E-value=0.019 Score=49.42 Aligned_cols=111 Identities=21% Similarity=0.286 Sum_probs=73.6
Q ss_pred hhhhhhhccCCCCCCcEEEEEcCCCchHHHHHH-HHHhCCCCcEEEEEeCCC-chhHHhhhhcccCCCeEEEEeCCCCHH
Q 023671 27 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAM-LMKINPLVSVLHLYDVVN-TPGVTADISHMDTGAVVRGFLGQPQLE 104 (279)
Q Consensus 27 ~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~-~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~~~~v~~~~~~~d~~ 104 (279)
-+|.-+....+..++.+|.|||+ |.+|.+++. ....+.-..-+..+|+++ .-|.. .. ...++. -++++
T Consensus 70 ~L~~ff~~~Lg~~~~tnviiVG~-GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~--~~----~v~V~~---~d~le 139 (211)
T COG2344 70 YLRDFFDDLLGQDKTTNVIIVGV-GNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTK--IG----DVPVYD---LDDLE 139 (211)
T ss_pred HHHHHHHHHhCCCcceeEEEEcc-ChHHHHHhcCcchhhcCceEEEEecCCHHHhCcc--cC----Ceeeec---hHHHH
Confidence 34555556667777889999999 999999985 555455556788999986 22211 01 112222 23555
Q ss_pred hhhC--CCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCCchH
Q 023671 105 NALT--GMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVNSTV 165 (279)
Q Consensus 105 eal~--~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd~~t 165 (279)
+-++ |.|+.|+|. | .+-.+++++.+.+.+-+++ +++| |+.+.+
T Consensus 140 ~~v~~~dv~iaiLtV--P--------------a~~AQ~vad~Lv~aGVkGI-lNFt-Pv~l~~ 184 (211)
T COG2344 140 KFVKKNDVEIAILTV--P--------------AEHAQEVADRLVKAGVKGI-LNFT-PVRLQV 184 (211)
T ss_pred HHHHhcCccEEEEEc--c--------------HHHHHHHHHHHHHcCCceE-Eecc-ceEecC
Confidence 5565 899999986 2 2446788888888887774 5666 886654
No 438
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.12 E-value=0.036 Score=53.42 Aligned_cols=66 Identities=24% Similarity=0.173 Sum_probs=47.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
....+|+|+|. |.+|..++..+...|. +|+.+|+++.+. .+. .+. . .. .+++++++++|+||.+.
T Consensus 193 l~Gk~VvViG~-G~IG~~vA~~ak~~Ga--~ViV~d~dp~r~~~A~--~~G---~--~v----~~leeal~~aDVVItaT 258 (406)
T TIGR00936 193 IAGKTVVVAGY-GWCGKGIAMRARGMGA--RVIVTEVDPIRALEAA--MDG---F--RV----MTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCcCEEEEECC-CHHHHHHHHHHhhCcC--EEEEEeCChhhHHHHH--hcC---C--Ee----CCHHHHHhcCCEEEECC
Confidence 45679999999 9999999999988886 899999877321 111 111 1 11 13467889999999876
Q ss_pred C
Q 023671 118 G 118 (279)
Q Consensus 118 g 118 (279)
|
T Consensus 259 G 259 (406)
T TIGR00936 259 G 259 (406)
T ss_pred C
Confidence 4
No 439
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.11 E-value=0.053 Score=52.55 Aligned_cols=92 Identities=18% Similarity=0.132 Sum_probs=60.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchh-HHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPG-VTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g-~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
....+|+|+|. |.+|..++..+...|. +|+++|+++.+. .+.. + . . .. .+++++++++|+||.+.
T Consensus 210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga--~ViV~d~dp~ra~~A~~--~-G--~--~v----~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 210 IAGKVVVVAGY-GDVGKGCAQRLRGLGA--RVIVTEVDPICALQAAM--D-G--F--RV----MTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCCchhhHHHHh--c-C--C--Ee----cCHHHHHhCCCEEEECC
Confidence 35679999999 9999999999998887 899999987221 1110 1 1 1 11 13567889999999876
Q ss_pred CCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671 118 GVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 118 g~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv 161 (279)
|.+ .++. .+.+....+.+++++++-+-
T Consensus 276 G~~---------------~vI~--~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GNK---------------DVIT--AEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CCH---------------HHHH--HHHHhcCCCCCEEEEcCCCC
Confidence 422 1121 12233334778888886543
No 440
>PRK06484 short chain dehydrogenase; Validated
Probab=96.11 E-value=0.056 Score=53.05 Aligned_cols=115 Identities=17% Similarity=0.161 Sum_probs=64.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEE-EeCCCCHH-------hhhCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLE-------NALTGM 110 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~~~d~~-------eal~~A 110 (279)
.+.+.|+||++.+|..++..|+..|. +|+++|++.. .....++.... ..+.. .+...++. +.+...
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~~--~~~~~D~~~~~~~~~~~~~~~~~~g~i 80 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARAGD--QVVVADRNVERARERADSLGPDH--HALAMDVSDEAQIREGFEQLHREFGRI 80 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCce--eEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence 45788999999999999999999997 9999998752 21222221100 00111 00011111 123468
Q ss_pred CEEEEccCCCC---CC--CCch---hhHHHhhHH----HHHHHHHHHHHhCCCceEEEecC
Q 023671 111 DLVIIPAGVPR---KP--GMTR---DDLFNINAG----IVRTLCEGIAKCCPNATVNLISN 159 (279)
Q Consensus 111 DiVIitag~~~---k~--g~~r---~d~~~~N~~----i~~~i~~~I~~~~p~a~viv~TN 159 (279)
|++|+++|... .+ ..+. ...+..|+. +.+.+.+.+.+....+.|+++|.
T Consensus 81 D~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS 141 (520)
T PRK06484 81 DVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVAS 141 (520)
T ss_pred CEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECC
Confidence 99999998731 11 1121 233455544 55555666554333336666654
No 441
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.08 E-value=0.038 Score=54.73 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=73.9
Q ss_pred HHHhccCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC-chhHHhhhhcccC-
Q 023671 13 RISAHLYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN-TPGVTADISHMDT- 90 (279)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~-~~g~~~DL~~~~~- 90 (279)
...+|+|+- |-.-.-++.+..++.||.|+|+ |.+|...+..+...|- +|+.+|+++ ....+..+.....
T Consensus 143 ~~aa~~~~~------~~~g~~taaG~~pg~kVlViGa-G~iGL~Ai~~Ak~lGA--~V~a~D~~~~rle~aeslGA~~v~ 213 (509)
T PRK09424 143 IEAAHEFGR------FFTGQITAAGKVPPAKVLVIGA-GVAGLAAIGAAGSLGA--IVRAFDTRPEVAEQVESMGAEFLE 213 (509)
T ss_pred HHHHHHhcc------cCCCceeccCCcCCCEEEEECC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHcCCeEEE
Confidence 344566653 2233456666777889999999 9999999988888886 799999987 2223332221100
Q ss_pred -CC-e--------EEEEeCCCCH--------HhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCc
Q 023671 91 -GA-V--------VRGFLGQPQL--------ENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNA 152 (279)
Q Consensus 91 -~~-~--------v~~~~~~~d~--------~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a 152 (279)
.. . .+.. +.++ .+.++++|+||.|++.|.++.. .-+.++..+.++ |.+
T Consensus 214 i~~~e~~~~~~gya~~~--s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP---------~lit~~~v~~mk---pGg 279 (509)
T PRK09424 214 LDFEEEGGSGDGYAKVM--SEEFIKAEMALFAEQAKEVDIIITTALIPGKPAP---------KLITAEMVASMK---PGS 279 (509)
T ss_pred eccccccccccchhhhc--chhHHHHHHHHHHhccCCCCEEEECCCCCcccCc---------chHHHHHHHhcC---CCC
Confidence 00 0 0000 1121 1224689999999998754321 011244444444 888
Q ss_pred eEEEecCC
Q 023671 153 TVNLISNP 160 (279)
Q Consensus 153 ~viv~TNP 160 (279)
.|+.++-+
T Consensus 280 vIVdvg~~ 287 (509)
T PRK09424 280 VIVDLAAE 287 (509)
T ss_pred EEEEEccC
Confidence 88877764
No 442
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.08 E-value=0.16 Score=45.58 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 40 ~~~KI~IIGA~G--~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
+.+.+.|+||++ -+|..++..|++.|. .|++.|++.
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~--~vil~~r~~ 42 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGA--ELAFTYQND 42 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCC--EEEEEecch
Confidence 345788999953 699999999999997 899998764
No 443
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=96.08 E-value=0.024 Score=50.11 Aligned_cols=35 Identities=31% Similarity=0.467 Sum_probs=31.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
..||.|+|+ |.+|+.++..|+..|. .++.|+|.+.
T Consensus 21 ~~~VlivG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 55 (228)
T cd00757 21 NARVLVVGA-GGLGSPAAEYLAAAGV-GKLGLVDDDV 55 (228)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 348999999 9999999999999985 6999999775
No 444
>PRK06436 glycerate dehydrogenase; Provisional
Probab=96.08 E-value=0.029 Score=51.99 Aligned_cols=96 Identities=20% Similarity=0.274 Sum_probs=61.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++|+|+|- |.+|+.+|..+..-|. +|+.+|+.... .. .... ..++++.++.||+|+++..
T Consensus 120 L~gktvgIiG~-G~IG~~vA~~l~afG~--~V~~~~r~~~~--------~~----~~~~--~~~l~ell~~aDiv~~~lp 182 (303)
T PRK06436 120 LYNKSLGILGY-GGIGRRVALLAKAFGM--NIYAYTRSYVN--------DG----ISSI--YMEPEDIMKKSDFVLISLP 182 (303)
T ss_pred CCCCEEEEECc-CHHHHHHHHHHHHCCC--EEEEECCCCcc--------cC----cccc--cCCHHHHHhhCCEEEECCC
Confidence 34569999998 9999999988877787 99999975311 00 0000 1257788999999999864
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec--CCCCch
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS--NPVNST 164 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T--NPvd~~ 164 (279)
... +++ .++ | .+.+....|++++|+++ .++|.-
T Consensus 183 ~t~---~T~-~li--~-------~~~l~~mk~ga~lIN~sRG~~vd~~ 217 (303)
T PRK06436 183 LTD---ETR-GMI--N-------SKMLSLFRKGLAIINVARADVVDKN 217 (303)
T ss_pred CCc---hhh-cCc--C-------HHHHhcCCCCeEEEECCCccccCHH
Confidence 221 111 111 1 23333445889999985 556543
No 445
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.07 E-value=0.018 Score=53.52 Aligned_cols=69 Identities=17% Similarity=0.301 Sum_probs=45.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
.+++|||+ |..+...+..+.. .+ +.+|.++|++. ++..+.++.+ . ...+... ++.++++++||+|+.+-
T Consensus 129 ~~l~viGa-G~QA~~~~~a~~~~~~-i~~v~v~~r~~~~~~~~~~~~~~-~-~~~v~~~---~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 129 RTLGVIGA-GVQARWHLRALAAVRP-IKEVRVYSRSPERAEAFAARLRD-L-GVPVVAV---DSAEEAVRGADIIVTAT 200 (313)
T ss_dssp -EEEEE---SHHHHHHHHHHHHHS---SEEEEE-SSHHHHHHHHHHHHC-C-CTCEEEE---SSHHHHHTTSSEEEE--
T ss_pred ceEEEECC-CHHHHHHHHHHHHhCC-ceEEEEEccChhHHHHHHHhhcc-c-cccceec---cchhhhcccCCEEEEcc
Confidence 38999998 9999887776654 55 88999999986 3455566666 2 3445442 46789999999988764
No 446
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.05 E-value=0.024 Score=52.42 Aligned_cols=72 Identities=17% Similarity=0.074 Sum_probs=51.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
..+++|||+ |..|...+..+..-..+++|.++|++. +...+.++.+.. ...+... ++.++++++||+|+.+-
T Consensus 117 a~~l~iiGa-G~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~-~~~v~~~---~~~~eav~~aDIV~taT 190 (301)
T PRK06407 117 VENFTIIGS-GFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEF-GVDIRPV---DNAEAALRDADTITSIT 190 (301)
T ss_pred CcEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhc-CCcEEEe---CCHHHHHhcCCEEEEec
Confidence 458999998 999998777666555578999999986 344445555421 2234432 46789999999999764
No 447
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.99 E-value=0.2 Score=47.20 Aligned_cols=129 Identities=19% Similarity=0.229 Sum_probs=73.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcccCCCeEEEEeCCCCHHhhhCC-CCEEEEc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHMDTGAVVRGFLGQPQLENALTG-MDLVIIP 116 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~-ADiVIit 116 (279)
.+..+|+|+|+ |-+|......+...+. +|+.+|+++. ...+.+|.- ..-+.. . ..|.-+++++ +|+||.|
T Consensus 165 ~pG~~V~I~G~-GGlGh~avQ~Aka~ga--~Via~~~~~~K~e~a~~lGA---d~~i~~-~-~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPGKWVAVVGA-GGLGHMAVQYAKAMGA--EVIAITRSEEKLELAKKLGA---DHVINS-S-DSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHcCC--eEEEEeCChHHHHHHHHhCC---cEEEEc-C-CchhhHHhHhhCcEEEEC
Confidence 45679999999 9787777777766774 9999999872 233343321 111111 1 1222344433 9999999
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC-CchHHHHHHHHHHhCCCCCCCeeee---cchhHH
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV-NSTVPIAAEVFKKAGTYDPKKLLGV---TMLDVV 192 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv-d~~t~~~~~~~~~~~~~~~~kViG~---t~lds~ 192 (279)
++ + .-+....+.+ .+++.++.+.+|- ..+..+ ..+. .-+...+|.|. +..|+.
T Consensus 237 v~-~---------------~~~~~~l~~l---~~~G~~v~vG~~~~~~~~~~--~~~~--li~~~~~i~GS~~g~~~d~~ 293 (339)
T COG1064 237 VG-P---------------ATLEPSLKAL---RRGGTLVLVGLPGGGPIPLL--PAFL--LILKEISIVGSLVGTRADLE 293 (339)
T ss_pred CC-h---------------hhHHHHHHHH---hcCCEEEEECCCCCcccCCC--CHHH--hhhcCeEEEEEecCCHHHHH
Confidence 86 3 1133444444 4788899999994 332211 0011 11335689998 345554
Q ss_pred HHHHHH
Q 023671 193 RANTFV 198 (279)
Q Consensus 193 R~~~~l 198 (279)
.+..+.
T Consensus 294 e~l~f~ 299 (339)
T COG1064 294 EALDFA 299 (339)
T ss_pred HHHHHH
Confidence 444433
No 448
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=95.99 E-value=0.091 Score=48.42 Aligned_cols=114 Identities=11% Similarity=0.025 Sum_probs=65.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEe-CCCC---HHhh-------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFL-GQPQ---LENA------- 106 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~-~~~d---~~ea------- 106 (279)
.+.+.|+||++.+|..++..|+..| . +|++.++++. .....++... ...+.... .-++ .++.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~--~V~l~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~~~~~v~~~~~~~~~~ 78 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEW--HVIMACRDFLKAEQAAKSLGMP--KDSYTIMHLDLGSLDSVRQFVQQFRES 78 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCC--EEEEEeCCHHHHHHHHHHhcCC--CCeEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 3478899999999999999999998 7 9999988762 1122233211 11222111 1112 1111
Q ss_pred hCCCCEEEEccCCCCCC----CCch---hhHHHhhH----HHHHHHHHHHHHhCC-CceEEEec
Q 023671 107 LTGMDLVIIPAGVPRKP----GMTR---DDLFNINA----GIVRTLCEGIAKCCP-NATVNLIS 158 (279)
Q Consensus 107 l~~ADiVIitag~~~k~----g~~r---~d~~~~N~----~i~~~i~~~I~~~~p-~a~viv~T 158 (279)
....|++|+.||..... ..+. ...+..|. .+++.+.+.+.+... .+.||++|
T Consensus 79 ~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vs 142 (314)
T TIGR01289 79 GRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVG 142 (314)
T ss_pred CCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEe
Confidence 24689999999964221 1122 22344454 456667777765432 35566554
No 449
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.98 E-value=0.081 Score=51.55 Aligned_cols=128 Identities=18% Similarity=0.214 Sum_probs=72.8
Q ss_pred CCCCcEEEEEcCCCchHHH-HHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671 38 GAAGFKVAILGAAGGIGQP-LAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~-la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit 116 (279)
+-+.+||.|+|. |-.|.+ +|..|...|. +|...|.+... ...+|... .+..+.+. + .+.+.++|+||.+
T Consensus 4 ~~~~~~v~viG~-G~sG~s~~a~~L~~~G~--~V~~~D~~~~~-~~~~l~~~----gi~~~~~~-~-~~~~~~~d~vv~s 73 (461)
T PRK00421 4 LRRIKRIHFVGI-GGIGMSGLAEVLLNLGY--KVSGSDLKESA-VTQRLLEL----GAIIFIGH-D-AENIKDADVVVYS 73 (461)
T ss_pred cCCCCEEEEEEE-chhhHHHHHHHHHhCCC--eEEEECCCCCh-HHHHHHHC----CCEEeCCC-C-HHHCCCCCEEEEC
Confidence 345568999999 999999 7999999998 99999987632 12234332 12222122 2 3567899999999
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHHhCCC
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKKAGTY 178 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~~~~~ 178 (279)
.|+|...-. .......+++++.+. +.+.+..++..+|-+|-..+ ..|.++.++++. .|+
T Consensus 74 pgi~~~~~~-~~~a~~~~i~i~~~~-e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~-~g~ 134 (461)
T PRK00421 74 SAIPDDNPE-LVAARELGIPVVRRA-EMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAE-AGL 134 (461)
T ss_pred CCCCCCCHH-HHHHHHCCCcEEeHH-HHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHh-cCC
Confidence 998753211 111223344544321 11122222223444444444 566666666654 344
No 450
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.98 E-value=0.054 Score=47.31 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=47.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.+||.|||+ |.+|..-+..|+..|. +|.+++.+.. ....++... ..+.......+ .+.+.++|+||.+-+
T Consensus 9 gk~vlVvGg-G~va~rk~~~Ll~~ga--~VtVvsp~~~-~~l~~l~~~---~~i~~~~~~~~-~~dl~~~~lVi~at~ 78 (205)
T TIGR01470 9 GRAVLVVGG-GDVALRKARLLLKAGA--QLRVIAEELE-SELTLLAEQ---GGITWLARCFD-ADILEGAFLVIAATD 78 (205)
T ss_pred CCeEEEECc-CHHHHHHHHHHHHCCC--EEEEEcCCCC-HHHHHHHHc---CCEEEEeCCCC-HHHhCCcEEEEECCC
Confidence 459999999 9999999999998886 9999987542 122223322 23443332223 466899999998754
No 451
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=95.98 E-value=0.022 Score=53.59 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=27.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDV 75 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~ 75 (279)
|+||+|+||+|.+|..++..|...+...-+.+.|.
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~ 36 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSR 36 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECc
Confidence 57999999999999999988887654433455663
No 452
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.97 E-value=0.033 Score=53.84 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=64.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit 116 (279)
.+..+|+|+|+ |.+|..++..|...| +.+|.++|++.. ...+.++. ..+.. ..++.+.+.++|+||.+
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G-~~~V~v~~r~~~ra~~la~~~g-----~~~~~---~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKG-VRKITVANRTLERAEELAEEFG-----GEAIP---LDELPEALAEADIVISS 249 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCC-CCeEEEEeCCHHHHHHHHHHcC-----CcEee---HHHHHHHhccCCEEEEC
Confidence 45679999998 999999998888777 358999998752 22222221 11111 13456778999999998
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHH-HHh-CCCceEEEecCCCCchH
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGI-AKC-CPNATVNLISNPVNSTV 165 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I-~~~-~p~a~viv~TNPvd~~t 165 (279)
.+.+... . ..+.++.. ... ....+++=+++|-|+=.
T Consensus 250 T~s~~~~-i------------~~~~l~~~~~~~~~~~~vviDla~Prdid~ 287 (423)
T PRK00045 250 TGAPHPI-I------------GKGMVERALKARRHRPLLLVDLAVPRDIEP 287 (423)
T ss_pred CCCCCcE-E------------cHHHHHHHHhhccCCCeEEEEeCCCCCCcc
Confidence 7654211 0 11112222 111 24568888899988743
No 453
>PRK07340 ornithine cyclodeaminase; Validated
Probab=95.97 E-value=0.031 Score=51.73 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=49.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
..+|+|+|+ |..|...+..+.......+|.++|++. ++..+.++.+. ...+. ..+.++++++||+||.+..
T Consensus 125 ~~~v~IiGa-G~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~--~~~~~----~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 125 PGDLLLIGT-GVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARAL--GPTAE----PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc--CCeeE----ECCHHHHhhcCCEEEEccC
Confidence 458999998 999999988876533347999999986 33344444322 11222 1356789999999999754
No 454
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=95.96 E-value=0.11 Score=43.48 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+.+||.|+|+ |.||...+..|+..|. +|.+++.+... ...++. .+......-. ++.++++|+||.+.
T Consensus 12 ~~~~vlVvGG-G~va~rka~~Ll~~ga--~V~VIsp~~~~-~l~~l~------~i~~~~~~~~-~~dl~~a~lViaaT 78 (157)
T PRK06719 12 HNKVVVIIGG-GKIAYRKASGLKDTGA--FVTVVSPEICK-EMKELP------YITWKQKTFS-NDDIKDAHLIYAAT 78 (157)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCC--EEEEEcCccCH-HHHhcc------CcEEEecccC-hhcCCCceEEEECC
Confidence 3569999999 9999999999999887 99999743222 112221 1111111112 35689999998874
No 455
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.94 E-value=0.063 Score=52.32 Aligned_cols=122 Identities=20% Similarity=0.246 Sum_probs=72.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-h--hHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-P--GVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~--g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
+||.|+|. |..|.+++..|...|. +|.+.|.++. . ....++... .+..+.+. +..+.+.++|+||.+.|
T Consensus 15 ~~i~v~G~-G~sG~a~a~~L~~~G~--~V~~~D~~~~~~~~~~~~~l~~~----gi~~~~~~-~~~~~~~~~dlVV~Spg 86 (458)
T PRK01710 15 KKVAVVGI-GVSNIPLIKFLVKLGA--KVTAFDKKSEEELGEVSNELKEL----GVKLVLGE-NYLDKLDGFDVIFKTPS 86 (458)
T ss_pred CeEEEEcc-cHHHHHHHHHHHHCCC--EEEEECCCCCccchHHHHHHHhC----CCEEEeCC-CChHHhccCCEEEECCC
Confidence 48999998 9999999999999998 9999998652 1 111223322 12222222 22355789999999988
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC--chHHHHHHHHHH
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN--STVPIAAEVFKK 174 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd--~~t~~~~~~~~~ 174 (279)
++.... ......+.+++++.++- .+.+.. +..+|-+|-..+ ..+.++..++..
T Consensus 87 i~~~~p-~~~~a~~~~i~i~s~~e-~~~~~~-~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 87 MRIDSP-ELVKAKEEGAYITSEME-EFIKYC-PAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred CCCCch-HHHHHHHcCCcEEechH-Hhhhhc-CCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 864321 11222345666665442 222332 233555555555 555666666654
No 456
>PRK07041 short chain dehydrogenase; Provisional
Probab=95.94 E-value=0.048 Score=47.15 Aligned_cols=107 Identities=16% Similarity=0.226 Sum_probs=59.6
Q ss_pred EEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-C---CCCHHhhh---CCCCEEEEc
Q 023671 46 ILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-G---QPQLENAL---TGMDLVIIP 116 (279)
Q Consensus 46 IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~---~~d~~eal---~~ADiVIit 116 (279)
|+||+|.+|..++..|+++|. +|+++++++ ......++.. ...+..+. . ..++.+++ ...|++|+.
T Consensus 2 ItGas~~iG~~~a~~l~~~G~--~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ 76 (230)
T PRK07041 2 VVGGSSGIGLALARAFAAEGA--RVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFAEAGPFDHVVIT 76 (230)
T ss_pred eecCCChHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHHhcCCCCEEEEC
Confidence 799999999999999999997 899999875 2222222221 11222211 1 11222333 347999999
Q ss_pred cCCCCCCC---Cc---hhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 117 AGVPRKPG---MT---RDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 117 ag~~~k~g---~~---r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
+|...... .+ -.+.+..|+.....+.+ .....+.+.+++++
T Consensus 77 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~-~~~~~~~g~iv~~s 123 (230)
T PRK07041 77 AADTPGGPVRALPLAAAQAAMDSKFWGAYRVAR-AARIAPGGSLTFVS 123 (230)
T ss_pred CCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHh-hhhhcCCeEEEEEC
Confidence 98643211 11 12345566655555555 22223345555543
No 457
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=95.93 E-value=0.018 Score=53.99 Aligned_cols=74 Identities=26% Similarity=0.212 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccC--CCeEEEEeCCCCHHh-hhCCCCEEEEcc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDT--GAVVRGFLGQPQLEN-ALTGMDLVIIPA 117 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~--~~~v~~~~~~~d~~e-al~~ADiVIita 117 (279)
++||+|+||+|..|.-+...|...+.+ |+.++...+..|+...-.|-.. ...+... +.|.++ ..++||+||.+-
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~Hp~v-e~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~--~~~~~~~~~~~~DvvFlal 78 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGHPDV-ELILISSRERAGKPVSDVHPNLRGLVDLPFQ--TIDPEKIELDECDVVFLAL 78 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcCCCe-EEEEeechhhcCCchHHhCcccccccccccc--cCChhhhhcccCCEEEEec
Confidence 579999999999999999999988755 5888876654444332222211 1112221 112222 245699999974
No 458
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=95.92 E-value=0.022 Score=53.53 Aligned_cols=72 Identities=25% Similarity=0.306 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCC-CCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINP-LVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~-~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
+.+||+|+||+|.+|..+...|..+. ...+|.++-.+...|+...+... .+.... . + +.++.++|+||++++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~----~~~v~~-~-~-~~~~~~~Dvvf~a~p 75 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGK----SVTVQD-A-A-EFDWSQAQLAFFVAG 75 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCc----ceEEEe-C-c-hhhccCCCEEEECCC
Confidence 45699999999999999999888743 24588888655433443333211 233211 1 2 234589999999865
No 459
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=95.92 E-value=0.017 Score=57.61 Aligned_cols=103 Identities=19% Similarity=0.244 Sum_probs=70.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHh-----CCC-----CcEEEEEeCCC--chhHHhhhhcccC-C-CeEEEEeCCCCHHhh
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKI-----NPL-----VSVLHLYDVVN--TPGVTADISHMDT-G-AVVRGFLGQPQLENA 106 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~-----~~~-----~~ev~L~D~~~--~~g~~~DL~~~~~-~-~~v~~~~~~~d~~ea 106 (279)
..||.+.|| |..|..++..|.. .|+ ..+++++|.+- ..+...+|.+... + .... ...++.++
T Consensus 321 d~riv~~GA-GsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~---~~~~L~e~ 396 (581)
T PLN03129 321 DQRILFAGA-GEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHE---PGASLLEA 396 (581)
T ss_pred hceEEEECC-CHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcc---cCCCHHHH
Confidence 469999999 9999999987765 355 25899999865 1111100221110 0 0111 12478999
Q ss_pred hCC--CCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671 107 LTG--MDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 107 l~~--ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv 161 (279)
+++ +|+.|=+.+.+ | -+.+++++.|.+++++.+|+-.|||.
T Consensus 397 v~~vkptvLIG~S~~~---g-----------~Ft~evi~~Ma~~~~rPIIFaLSNPt 439 (581)
T PLN03129 397 VKAIKPTVLIGLSGVG---G-----------TFTKEVLEAMASLNERPIIFALSNPT 439 (581)
T ss_pred HhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 999 89988776543 2 13568889999999999999999997
No 460
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=95.91 E-value=0.069 Score=46.45 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=27.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVV 76 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~ 76 (279)
+.+.|+||+|++|..++..|+..|. +|++. +.+
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~--~v~~~~~~~ 35 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGY--TVAVNYQQN 35 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC--EEEEEeCCC
Confidence 3689999999999999999999987 77664 443
No 461
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=95.89 E-value=0.033 Score=52.13 Aligned_cols=65 Identities=25% Similarity=0.320 Sum_probs=47.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.++|+|||. |.+|+.++..+..-|. +|..||......... .+ .+. ...++++-++.||||++...
T Consensus 142 gkTvGIiG~-G~IG~~va~~l~afgm--~v~~~d~~~~~~~~~--~~-----~~~---~~~~Ld~lL~~sDiv~lh~P 206 (324)
T COG0111 142 GKTVGIIGL-GRIGRAVAKRLKAFGM--KVIGYDPYSPRERAG--VD-----GVV---GVDSLDELLAEADILTLHLP 206 (324)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCC--eEEEECCCCchhhhc--cc-----cce---ecccHHHHHhhCCEEEEcCC
Confidence 679999999 9999999999998898 999999843211111 00 011 12357888999999999763
No 462
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=95.89 E-value=0.055 Score=50.65 Aligned_cols=93 Identities=27% Similarity=0.323 Sum_probs=59.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++++|+|. |.+|+.+|..+.--|. +|+.+|+.+. .+..+... .+ + . ++++.++.||+|++.+.
T Consensus 144 l~gktvGIiG~-GrIG~avA~r~~~Fgm--~v~y~~~~~~-~~~~~~~~------~~-y--~-~l~ell~~sDii~l~~P 209 (324)
T COG1052 144 LRGKTLGIIGL-GRIGQAVARRLKGFGM--KVLYYDRSPN-PEAEKELG------AR-Y--V-DLDELLAESDIISLHCP 209 (324)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHhcCCC--EEEEECCCCC-hHHHhhcC------ce-e--c-cHHHHHHhCCEEEEeCC
Confidence 55789999998 9999999999984455 9999998652 11111111 11 1 1 36788999999999864
Q ss_pred CCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 119 VPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 119 ~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
... +++. .-|. +.+++..|.+++|+.+
T Consensus 210 lt~---~T~h---Lin~-------~~l~~mk~ga~lVNta 236 (324)
T COG1052 210 LTP---ETRH---LINA-------EELAKMKPGAILVNTA 236 (324)
T ss_pred CCh---HHhh---hcCH-------HHHHhCCCCeEEEECC
Confidence 321 1111 1121 2344445888998875
No 463
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=95.88 E-value=0.084 Score=47.77 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=43.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit 116 (279)
+++||+|.||+|.+|+.+...+.+.+-..=+..+|.......-.|.........+... .++|+.....++|++|=.
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~-v~~~~~~~~~~~DV~IDF 76 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVP-VTDDLLLVKADADVLIDF 76 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCce-eecchhhcccCCCEEEEC
Confidence 3679999999999999999999887744444556665411111122222111111110 122445567788888753
No 464
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=95.86 E-value=0.035 Score=51.80 Aligned_cols=73 Identities=16% Similarity=0.232 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
..+++|||+ |..|...+..|....-+.+|.+++++. ++..+.++.+.. ...+.. .+++++++++||+||.+-.
T Consensus 129 ~~~v~iiGa-G~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~-g~~v~~---~~~~~~av~~aDiVvtaT~ 203 (326)
T TIGR02992 129 SSVVAIFGA-GMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLL-GIDVTA---ATDPRAAMSGADIIVTTTP 203 (326)
T ss_pred CcEEEEECC-CHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhc-CceEEE---eCCHHHHhccCCEEEEecC
Confidence 358999998 999988888776433357999999986 333444443221 122322 2467889999999998754
No 465
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.85 E-value=0.045 Score=45.04 Aligned_cols=57 Identities=26% Similarity=0.417 Sum_probs=46.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.+.++|.|+|.+..+|..++..|..++. .+.+.|.+ +.++++++++||+||.+.|
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~ga--tV~~~~~~-----------------------t~~l~~~v~~ADIVvsAtg 80 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGA--TVYSCDWK-----------------------TIQLQSKVHDADVVVVGSP 80 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC--EEEEeCCC-----------------------CcCHHHHHhhCCEEEEecC
Confidence 4467999999999999999999998876 77777642 1246778999999999988
Q ss_pred CC
Q 023671 119 VP 120 (279)
Q Consensus 119 ~~ 120 (279)
.+
T Consensus 81 ~~ 82 (140)
T cd05212 81 KP 82 (140)
T ss_pred CC
Confidence 65
No 466
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=95.84 E-value=0.046 Score=52.09 Aligned_cols=35 Identities=26% Similarity=0.447 Sum_probs=30.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
..||.|+|+ |-+|+.++..|+..|. .+|.++|.+.
T Consensus 41 ~~~VliiG~-GglG~~v~~~La~~Gv-g~i~ivD~D~ 75 (370)
T PRK05600 41 NARVLVIGA-GGLGCPAMQSLASAGV-GTITLIDDDT 75 (370)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEeCCE
Confidence 348999999 9999999999999884 6999999874
No 467
>PLN02306 hydroxypyruvate reductase
Probab=95.83 E-value=0.063 Score=51.46 Aligned_cols=103 Identities=22% Similarity=0.272 Sum_probs=59.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHH-hCCCCcEEEEEeCCCchhHH---hhhhcc---cCCCeEEEEeCCCCHHhhhCCCC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMK-INPLVSVLHLYDVVNTPGVT---ADISHM---DTGAVVRGFLGQPQLENALTGMD 111 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~-~~~~~~ev~L~D~~~~~g~~---~DL~~~---~~~~~v~~~~~~~d~~eal~~AD 111 (279)
...++|+|||. |.+|+.+|..+. .-|. +|..||........ ..+... ........ ....++++.++.||
T Consensus 163 L~gktvGIiG~-G~IG~~vA~~l~~~fGm--~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~L~ell~~sD 238 (386)
T PLN02306 163 LKGQTVGVIGA-GRIGSAYARMMVEGFKM--NLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTW-KRASSMEEVLREAD 238 (386)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhcCCC--EEEEECCCCchhhhhhhhhhcccccccccccccc-cccCCHHHHHhhCC
Confidence 34569999998 999999998875 4566 99999975421110 011100 00001111 01236889999999
Q ss_pred EEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 112 LVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 112 iVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
+|++.+... + +++ .++ | . +.++.-.|++++|+++
T Consensus 239 iV~lh~Plt--~-~T~-~li--n----~---~~l~~MK~ga~lIN~a 272 (386)
T PLN02306 239 VISLHPVLD--K-TTY-HLI--N----K---ERLALMKKEAVLVNAS 272 (386)
T ss_pred EEEEeCCCC--h-hhh-hhc--C----H---HHHHhCCCCeEEEECC
Confidence 999976321 1 111 111 1 1 2333444889999986
No 468
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.82 E-value=0.0037 Score=52.63 Aligned_cols=45 Identities=27% Similarity=0.209 Sum_probs=35.6
Q ss_pred hhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 30 QAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 30 ~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
-.+-++++..++.||+|+|+ |.||...+..+...|. +++.+|.+.
T Consensus 9 ~~~~~~~~~~~p~~vvv~G~-G~vg~gA~~~~~~lGa--~v~~~d~~~ 53 (168)
T PF01262_consen 9 GMLLGGPGGVPPAKVVVTGA-GRVGQGAAEIAKGLGA--EVVVPDERP 53 (168)
T ss_dssp SHEECTTTEE-T-EEEEEST-SHHHHHHHHHHHHTT---EEEEEESSH
T ss_pred ceeccCCCCCCCeEEEEECC-CHHHHHHHHHHhHCCC--EEEeccCCH
Confidence 34456667778899999998 9999999999998887 999999865
No 469
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.80 E-value=0.075 Score=53.76 Aligned_cols=138 Identities=16% Similarity=0.198 Sum_probs=81.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCC---HH-hhhCCCCEEEEc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQ---LE-NALTGMDLVIIP 116 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d---~~-eal~~ADiVIit 116 (279)
..+|.|+|. |.+|+.++..|..+++ +++++|.|+.. +..+.+.. ..-+.+ ..++ ++ ..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vv~~ 471 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKM--RITVLERDISA--VNLMRKYG-YKVYYG--DATQLELLRAAGAEKAEAIVIT 471 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhCC-CeEEEe--eCCCHHHHHhcCCccCCEEEEE
Confidence 358999999 9999999999998888 99999998621 12222221 111222 1223 11 125799999998
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe-cCCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHH
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI-SNPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 195 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~-TNPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~ 195 (279)
.+.+ ..| ..++..+++.+|+..++.- .||.+. +.+++. | .+.|+=-+..-+.++-
T Consensus 472 ~~d~-----------~~n----~~i~~~~r~~~p~~~IiaRa~~~~~~------~~L~~~-G--a~~vv~e~~es~l~l~ 527 (601)
T PRK03659 472 CNEP-----------EDT----MKIVELCQQHFPHLHILARARGRVEA------HELLQA-G--VTQFSRETFSSALELG 527 (601)
T ss_pred eCCH-----------HHH----HHHHHHHHHHCCCCeEEEEeCCHHHH------HHHHhC-C--CCEEEccHHHHHHHHH
Confidence 5311 233 3455667788898766544 555433 233432 3 3455443433334444
Q ss_pred HHHHHHcCCCCCCCc
Q 023671 196 TFVAEVLGLDPRDVD 210 (279)
Q Consensus 196 ~~la~~l~v~~~~V~ 210 (279)
...=..+|+++.++.
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (601)
T PRK03659 528 RKTLVSLGMHPHQAQ 542 (601)
T ss_pred HHHHHHcCCCHHHHH
Confidence 444477788887764
No 470
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.79 E-value=0.042 Score=51.02 Aligned_cols=71 Identities=15% Similarity=0.298 Sum_probs=48.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHh-CCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKI-NPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~-~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIit 116 (279)
...+|+|||+ |.+|...+..+.. .+ ..+|.++|+++ ++..+.++.+. ...+... .+.++++++||+|+.+
T Consensus 124 ~~~~v~iiG~-G~~a~~~~~al~~~~~-~~~V~V~~Rs~~~a~~~a~~~~~~--g~~~~~~---~~~~~av~~aDIVi~a 196 (314)
T PRK06141 124 DASRLLVVGT-GRLASLLALAHASVRP-IKQVRVWGRDPAKAEALAAELRAQ--GFDAEVV---TDLEAAVRQADIISCA 196 (314)
T ss_pred CCceEEEECC-cHHHHHHHHHHHhcCC-CCEEEEEcCCHHHHHHHHHHHHhc--CCceEEe---CCHHHHHhcCCEEEEe
Confidence 3458999998 9999999875554 44 56999999876 33334444332 1123332 3567889999999665
Q ss_pred c
Q 023671 117 A 117 (279)
Q Consensus 117 a 117 (279)
.
T Consensus 197 T 197 (314)
T PRK06141 197 T 197 (314)
T ss_pred e
Confidence 4
No 471
>PRK13529 malate dehydrogenase; Provisional
Probab=95.79 E-value=0.025 Score=56.29 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=71.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHh----CCCC-----cEEEEEeCCC--chhHHhhhhccc---C--CCeEEEE---eCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKI----NPLV-----SVLHLYDVVN--TPGVTADISHMD---T--GAVVRGF---LGQP 101 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~----~~~~-----~ev~L~D~~~--~~g~~~DL~~~~---~--~~~v~~~---~~~~ 101 (279)
..||.+.|| |..|..+|..|.. .|+- .+++++|.+- ..+. .||.+.. . ....... ....
T Consensus 295 d~riv~~GA-GsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r-~~l~~~k~~fa~~~~~~~~~~~~~~~~ 372 (563)
T PRK13529 295 DQRIVFLGA-GSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDM-PDLLDFQKPYARKREELADWDTEGDVI 372 (563)
T ss_pred hcEEEEECC-CHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCC-CcchHHHHHHhhhcccccccccccCCC
Confidence 369999999 9999999987765 5653 5999999865 1111 1122110 0 0111000 0124
Q ss_pred CHHhhhCCC--CEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCCC
Q 023671 102 QLENALTGM--DLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPVN 162 (279)
Q Consensus 102 d~~eal~~A--DiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPvd 162 (279)
++.++++++ |+.|=+.+.+ | -+.+++++.|.+++++.+|+-.|||..
T Consensus 373 ~L~e~v~~~kPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~ 421 (563)
T PRK13529 373 SLLEVVRNVKPTVLIGVSGQP---G-----------AFTEEIVKEMAAHCERPIIFPLSNPTS 421 (563)
T ss_pred CHHHHHhccCCCEEEEecCCC---C-----------CCCHHHHHHHHhcCCCCEEEECCCcCC
Confidence 788999998 9988776544 2 235688999999999999999999986
No 472
>PRK06484 short chain dehydrogenase; Validated
Probab=95.77 E-value=0.096 Score=51.39 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=65.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc--hhHHhhhhcccCCCeEEE-EeCCCCHHhh-------hCCC
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT--PGVTADISHMDTGAVVRG-FLGQPQLENA-------LTGM 110 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~--~g~~~DL~~~~~~~~v~~-~~~~~d~~ea-------l~~A 110 (279)
.+++.|+||+|.+|..++..|+.+|. +|++.|+++. +....++... ...+.. .....++.+. +...
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~--~V~~~~r~~~~~~~~~~~~~~~--~~~~~~D~~~~~~~~~~~~~~~~~~g~i 344 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGD--RLLIIDRDAEGAKKLAEALGDE--HLSVQADITDEAAVESAFAQIQARWGRL 344 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhCCc--eeEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 46899999999999999999999997 9999998752 1111111110 001111 0001112222 2357
Q ss_pred CEEEEccCCCC--CC--CCch---hhHHHhhHHHHHHHHHHHHHh-CCCceEEEecCCC
Q 023671 111 DLVIIPAGVPR--KP--GMTR---DDLFNINAGIVRTLCEGIAKC-CPNATVNLISNPV 161 (279)
Q Consensus 111 DiVIitag~~~--k~--g~~r---~d~~~~N~~i~~~i~~~I~~~-~p~a~viv~TNPv 161 (279)
|++|++||... .+ ..+. ...+..|+.-...+.+.+..+ ...+.|+++|...
T Consensus 345 d~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~ 403 (520)
T PRK06484 345 DVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIA 403 (520)
T ss_pred CEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchh
Confidence 99999999752 11 1221 234555655544444444332 2346777776543
No 473
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=95.76 E-value=0.16 Score=42.81 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=42.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
+.++|+|||. |.-|...|..|...|+ +|..-.+........ ...+.+ + ..+..|+.+.||+|+++.
T Consensus 3 ~~k~IAViGy-GsQG~a~AlNLrDSG~--~V~Vglr~~s~s~~~--A~~~Gf---~----v~~~~eAv~~aDvV~~L~ 68 (165)
T PF07991_consen 3 KGKTIAVIGY-GSQGHAHALNLRDSGV--NVIVGLREGSASWEK--AKADGF---E----VMSVAEAVKKADVVMLLL 68 (165)
T ss_dssp CTSEEEEES--SHHHHHHHHHHHHCC---EEEEEE-TTCHHHHH--HHHTT----E----CCEHHHHHHC-SEEEE-S
T ss_pred CCCEEEEECC-ChHHHHHHHHHHhCCC--CEEEEecCCCcCHHH--HHHCCC---e----eccHHHHHhhCCEEEEeC
Confidence 4569999999 9999999999999998 877776654311111 111111 1 124679999999999985
No 474
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.74 E-value=0.042 Score=49.29 Aligned_cols=34 Identities=24% Similarity=0.425 Sum_probs=30.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.||.|+|+ |.+|+.++..|+..|. .++.++|.+.
T Consensus 33 ~~VliiG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 66 (245)
T PRK05690 33 ARVLVVGL-GGLGCAASQYLAAAGV-GTLTLVDFDT 66 (245)
T ss_pred CeEEEECC-CHHHHHHHHHHHHcCC-CEEEEEcCCE
Confidence 48999999 9999999999999985 6999999875
No 475
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.73 E-value=0.052 Score=48.14 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCC--CchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 39 AAGFKVAILGAA--GGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 39 ~~~~KI~IIGA~--G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.+.+.+.|+||+ +-+|..++..|+..|. +|++.++++
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~--~Vi~~~r~~ 43 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGA--TVIYTYQND 43 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCC--EEEEecCch
Confidence 345689999997 5899999999999998 899998764
No 476
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=95.72 E-value=0.044 Score=50.15 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=57.1
Q ss_pred CcccchhhhhhhhccC--CCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEE
Q 023671 21 PNLQNSCLRQAKCRAK--GGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRG 96 (279)
Q Consensus 21 ~~~~~~~~~~~~~~~~--~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~ 96 (279)
-|--..=|..++...- +..+.+++.|+|+ |-++..+++.|...|. .+|.+++++. ++..+.++... ..+..
T Consensus 103 ~NTD~~G~~~~l~~~~~~~~~~~k~vlvlGa-GGaarai~~aL~~~G~-~~i~I~nRt~~ka~~La~~~~~~---~~~~~ 177 (282)
T TIGR01809 103 DNTDWDGIAGALANIGKFEPLAGFRGLVIGA-GGTSRAAVYALASLGV-TDITVINRNPDKLSRLVDLGVQV---GVITR 177 (282)
T ss_pred ecCCHHHHHHHHHhhCCccccCCceEEEEcC-cHHHHHHHHHHHHcCC-CeEEEEeCCHHHHHHHHHHhhhc---Cccee
Confidence 3444444555665432 1235668999999 9999999999998884 5899999875 22233333211 11221
Q ss_pred EeCCCCHHhhhCCCCEEEEccCC
Q 023671 97 FLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 97 ~~~~~d~~eal~~ADiVIitag~ 119 (279)
.....++.+.+.++|+||.|...
T Consensus 178 ~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 178 LEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred ccchhhhhhcccCCCEEEECCCC
Confidence 11012233556899999998644
No 477
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.71 E-value=0.046 Score=48.92 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.||.|+|+ |-+|+.++..|+..|. .++.++|.+.
T Consensus 25 ~~VlvvG~-GglGs~va~~La~~Gv-g~i~lvD~D~ 58 (240)
T TIGR02355 25 SRVLIVGL-GGLGCAASQYLAAAGV-GNLTLLDFDT 58 (240)
T ss_pred CcEEEECc-CHHHHHHHHHHHHcCC-CEEEEEeCCc
Confidence 48999999 9999999999999984 6999999875
No 478
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.69 E-value=0.083 Score=53.69 Aligned_cols=138 Identities=17% Similarity=0.221 Sum_probs=82.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCH---H-hhhCCCCEEEEc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQL---E-NALTGMDLVIIP 116 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~---~-eal~~ADiVIit 116 (279)
..+|.|+|. |.+|+.++..|..++. +++++|.|+.+ +..+.+.. ..-+.+ ..++. + ..+++||.+|++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~--~vvvID~d~~~--v~~~~~~g-~~v~~G--Dat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGV--KMTVLDHDPDH--IETLRKFG-MKVFYG--DATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCC--CEEEEECCHHH--HHHHHhcC-CeEEEE--eCCCHHHHHhcCCCcCCEEEEE
Confidence 368999999 9999999999998888 89999998621 22222211 111222 12232 1 235689999998
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec-CCCCchHHHHHHHHHHhCCCCCCCeeeecchhHHHHH
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS-NPVNSTVPIAAEVFKKAGTYDPKKLLGVTMLDVVRAN 195 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T-NPvd~~t~~~~~~~~~~~~~~~~kViG~t~lds~R~~ 195 (279)
.+.+ +.| ..++..+++..|+..++.-+ |+.+. +.+++ .| .+.++--+...+.++-
T Consensus 472 ~~d~-----------~~n----~~i~~~ar~~~p~~~iiaRa~d~~~~------~~L~~-~G--ad~v~~e~~e~sl~l~ 527 (621)
T PRK03562 472 IDDP-----------QTS----LQLVELVKEHFPHLQIIARARDVDHY------IRLRQ-AG--VEKPERETFEGALKSG 527 (621)
T ss_pred eCCH-----------HHH----HHHHHHHHHhCCCCeEEEEECCHHHH------HHHHH-CC--CCEEehhhHhHHHHHH
Confidence 5311 234 34556667778987665544 43321 22333 23 3445444554455666
Q ss_pred HHHHHHcCCCCCCCc
Q 023671 196 TFVAEVLGLDPRDVD 210 (279)
Q Consensus 196 ~~la~~l~v~~~~V~ 210 (279)
+.+-+.+|+++.+++
T Consensus 528 ~~~L~~lg~~~~~~~ 542 (621)
T PRK03562 528 RLVLESLGLGPYEAR 542 (621)
T ss_pred HHHHHHcCCCHHHHH
Confidence 666678888876663
No 479
>PRK08223 hypothetical protein; Validated
Probab=95.69 E-value=0.052 Score=49.89 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=30.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.||.|+|+ |-+|+.++..|+..|. .+|.|+|-+.
T Consensus 28 s~VlIvG~-GGLGs~va~~LA~aGV-G~i~lvD~D~ 61 (287)
T PRK08223 28 SRVAIAGL-GGVGGIHLLTLARLGI-GKFTIADFDV 61 (287)
T ss_pred CCEEEECC-CHHHHHHHHHHHHhCC-CeEEEEeCCC
Confidence 48999999 9999999999999995 6999999875
No 480
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.69 E-value=0.05 Score=47.21 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=30.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN 77 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~ 77 (279)
.||.|+|+ |-+|+.++..|+..|. .++.++|.+.
T Consensus 20 s~VlviG~-gglGsevak~L~~~GV-g~i~lvD~d~ 53 (198)
T cd01485 20 AKVLIIGA-GALGAEIAKNLVLAGI-DSITIVDHRL 53 (198)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CEEEEEECCc
Confidence 48999999 8899999999999995 6899999774
No 481
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.66 E-value=0.072 Score=51.36 Aligned_cols=71 Identities=23% Similarity=0.196 Sum_probs=44.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE-eCCCCHHhh-hCCCCEEEEcc
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF-LGQPQLENA-LTGMDLVIIPA 117 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~-~~~~d~~ea-l~~ADiVIita 117 (279)
|||.|+|+ |.+|..++..|...+. +++++|.++... ..+.......-+.+- .....++++ +.++|.||++.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~--~v~vid~~~~~~--~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN--DVTVIDTDEERL--RRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC--cEEEEECCHHHH--HHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 58999999 9999999999998887 999999876211 112110000011110 001123444 78999999985
No 482
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=95.65 E-value=0.067 Score=49.10 Aligned_cols=89 Identities=18% Similarity=0.203 Sum_probs=53.0
Q ss_pred hhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHH
Q 023671 27 CLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLE 104 (279)
Q Consensus 27 ~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~ 104 (279)
=|.+.+.......+.+++.|+|| |-.+.++++.|+..|. .+|.++|++. ++..+.++........+.... ..++.
T Consensus 113 Gf~~~L~~~~~~~~~k~vlilGa-GGaarAi~~aL~~~g~-~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~-~~~~~ 189 (283)
T PRK14027 113 GFGRGMEEGLPNAKLDSVVQVGA-GGVGNAVAYALVTHGV-QKLQVADLDTSRAQALADVINNAVGREAVVGVD-ARGIE 189 (283)
T ss_pred HHHHHHHhcCcCcCCCeEEEECC-cHHHHHHHHHHHHCCC-CEEEEEcCCHHHHHHHHHHHhhccCcceEEecC-HhHHH
Confidence 35555543222244568999999 9999999999998774 5899999875 233333332211111122111 11223
Q ss_pred hhhCCCCEEEEccC
Q 023671 105 NALTGMDLVIIPAG 118 (279)
Q Consensus 105 eal~~ADiVIitag 118 (279)
+.+.++|+||.+..
T Consensus 190 ~~~~~~divINaTp 203 (283)
T PRK14027 190 DVIAAADGVVNATP 203 (283)
T ss_pred HHHhhcCEEEEcCC
Confidence 35678999999854
No 483
>PRK07589 ornithine cyclodeaminase; Validated
Probab=95.65 E-value=0.044 Score=51.74 Aligned_cols=71 Identities=18% Similarity=0.295 Sum_probs=49.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
..+++|||+ |..+...+..+..-..+.+|.++|++. ....+.++.+. ..++.. .++.++++++||+|+.+-
T Consensus 129 a~~l~iiGa-G~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~--~~~v~~---~~~~~~av~~ADIIvtaT 201 (346)
T PRK07589 129 SRTMALIGN-GAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGP--GLRIVA---CRSVAEAVEGADIITTVT 201 (346)
T ss_pred CcEEEEECC-cHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhc--CCcEEE---eCCHHHHHhcCCEEEEec
Confidence 458999998 999987776555433568999999986 33444455432 223443 246789999999999865
No 484
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.64 E-value=0.053 Score=49.79 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=53.5
Q ss_pred cCCCcccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEE
Q 023671 18 LYPPNLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGF 97 (279)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~ 97 (279)
++-||--.+|.+-...... ..+.++|+|+|++|.+|..++..|+..+. +|.+++..
T Consensus 137 ~~~p~T~~gii~~L~~~~i-~l~Gk~vvViG~gg~vGkpia~~L~~~ga--tVtv~~~~--------------------- 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNI-ELAGKHAVVVGRSAILGKPMAMMLLNANA--TVTICHSR--------------------- 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCC-CCCCCEEEEECCcHHHHHHHHHHHHhCCC--EEEEEeCC---------------------
Confidence 3456655666553322221 34567999999955699999999998885 88888641
Q ss_pred eCCCCHHhhhCCCCEEEEccCCC
Q 023671 98 LGQPQLENALTGMDLVIIPAGVP 120 (279)
Q Consensus 98 ~~~~d~~eal~~ADiVIitag~~ 120 (279)
+.++.+.+++||+||.+.|.|
T Consensus 193 --t~~L~~~~~~aDIvI~AtG~~ 213 (283)
T PRK14192 193 --TQNLPELVKQADIIVGAVGKP 213 (283)
T ss_pred --chhHHHHhccCCEEEEccCCC
Confidence 124566789999999998744
No 485
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.63 E-value=0.072 Score=48.99 Aligned_cols=95 Identities=18% Similarity=0.169 Sum_probs=55.1
Q ss_pred cccchhhhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCc-hhHHhhhhcc---cCCCeEEEE
Q 023671 22 NLQNSCLRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNT-PGVTADISHM---DTGAVVRGF 97 (279)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~-~g~~~DL~~~---~~~~~v~~~ 97 (279)
|--..=|.+++.......+.+++.|+|| |-.+.+++..|+..|. .+|.++++++. ...+.+|.+. .....+...
T Consensus 105 NTD~~Gf~~~l~~~~~~~~~k~vlvlGa-GGaarAi~~~l~~~g~-~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~ 182 (288)
T PRK12749 105 NTDGTGHIRAIKESGFDIKGKTMVLLGA-GGASTAIGAQGAIEGL-KEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVT 182 (288)
T ss_pred ecCHHHHHHHHHhcCCCcCCCEEEEECC-cHHHHHHHHHHHHCCC-CEEEEEeCCccHHHHHHHHHHHhhhccCceEEEe
Confidence 4443445666654332345568999999 8889998888887774 69999999742 1222222221 111122221
Q ss_pred eCC--CCHHhhhCCCCEEEEccC
Q 023671 98 LGQ--PQLENALTGMDLVIIPAG 118 (279)
Q Consensus 98 ~~~--~d~~eal~~ADiVIitag 118 (279)
.-. ..+.+++.++|+||.+-.
T Consensus 183 ~~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 183 DLADQQAFAEALASADILTNGTK 205 (288)
T ss_pred chhhhhhhhhhcccCCEEEECCC
Confidence 100 012345778999999853
No 486
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.60 E-value=0.059 Score=48.82 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=52.4
Q ss_pred hhhhhhccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHh
Q 023671 28 LRQAKCRAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLEN 105 (279)
Q Consensus 28 ~~~~~~~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~e 105 (279)
|..++.......+.+++.|+|+ |.+|..++..|...+. +|.++|++. ++..+.++... ..+.... .+ +.
T Consensus 104 ~~~~l~~~~~~~~~k~vliiGa-Gg~g~aia~~L~~~g~--~v~v~~R~~~~~~~la~~~~~~---~~~~~~~--~~-~~ 174 (270)
T TIGR00507 104 LVSDLERLIPLRPNQRVLIIGA-GGAARAVALPLLKADC--NVIIANRTVSKAEELAERFQRY---GEIQAFS--MD-EL 174 (270)
T ss_pred HHHHHHhcCCCccCCEEEEEcC-cHHHHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHHhhc---CceEEec--hh-hh
Confidence 4455544322234568999999 9999999999998885 999999875 22222333221 1122221 11 23
Q ss_pred hhCCCCEEEEccCCC
Q 023671 106 ALTGMDLVIIPAGVP 120 (279)
Q Consensus 106 al~~ADiVIitag~~ 120 (279)
.+.++|+||.+.+..
T Consensus 175 ~~~~~DivInatp~g 189 (270)
T TIGR00507 175 PLHRVDLIINATSAG 189 (270)
T ss_pred cccCccEEEECCCCC
Confidence 356899999997653
No 487
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.59 E-value=0.034 Score=49.20 Aligned_cols=72 Identities=17% Similarity=0.159 Sum_probs=48.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE--EeCCCCHHhhhCCCCEEEEccCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG--FLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~--~~~~~d~~eal~~ADiVIitag~ 119 (279)
++|.|+||+|++|++++..|+..++ +|+..-++....... . . ...+.. ......+..+++|.|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~--~v~~~~r~~~~~~~~--~-~--~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH--EVRAAVRNPEAAAAL--A-G--GVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC--EEEEEEeCHHHHHhh--c-C--CcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 5899999999999999999999987 877776654211112 2 1 111211 22233566778999999998764
Q ss_pred C
Q 023671 120 P 120 (279)
Q Consensus 120 ~ 120 (279)
.
T Consensus 74 ~ 74 (275)
T COG0702 74 L 74 (275)
T ss_pred c
Confidence 4
No 488
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.57 E-value=0.048 Score=50.12 Aligned_cols=57 Identities=18% Similarity=0.371 Sum_probs=45.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.+.++|+|||+++.||..++..|...+. .|..++.+ +.++.+.+++||+||.++|
T Consensus 156 l~Gk~vvVIGrs~~VG~pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVIsAvg 210 (286)
T PRK14175 156 LEGKNAVVIGRSHIVGQPVSKLLLQKNA--SVTILHSR-----------------------SKDMASYLKDADVIVSAVG 210 (286)
T ss_pred CCCCEEEEECCCchhHHHHHHHHHHCCC--eEEEEeCC-----------------------chhHHHHHhhCCEEEECCC
Confidence 4567999999955599999999998875 77777532 1256778999999999998
Q ss_pred CC
Q 023671 119 VP 120 (279)
Q Consensus 119 ~~ 120 (279)
.|
T Consensus 211 ~p 212 (286)
T PRK14175 211 KP 212 (286)
T ss_pred CC
Confidence 65
No 489
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=95.57 E-value=0.076 Score=50.54 Aligned_cols=33 Identities=30% Similarity=0.582 Sum_probs=30.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671 42 FKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 76 (279)
Q Consensus 42 ~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~ 76 (279)
.||.|+|+ |-+|+.++..|+..|. .+|.|+|.+
T Consensus 136 ~~VlvvG~-GG~Gs~ia~~La~~Gv-g~i~lvD~d 168 (376)
T PRK08762 136 ARVLLIGA-GGLGSPAALYLAAAGV-GTLGIVDHD 168 (376)
T ss_pred CcEEEECC-CHHHHHHHHHHHHcCC-CeEEEEeCC
Confidence 48999999 9999999999999995 699999987
No 490
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=95.56 E-value=0.038 Score=46.57 Aligned_cols=67 Identities=22% Similarity=0.305 Sum_probs=43.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAGV 119 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag~ 119 (279)
..+++.|+|- |.+|..+|..|...|. +|..+|+++.+.... ..+. ..+. +++++++.+|++|.+-|.
T Consensus 22 ~Gk~vvV~GY-G~vG~g~A~~lr~~Ga--~V~V~e~DPi~alqA-~~dG---f~v~------~~~~a~~~adi~vtaTG~ 88 (162)
T PF00670_consen 22 AGKRVVVIGY-GKVGKGIARALRGLGA--RVTVTEIDPIRALQA-AMDG---FEVM------TLEEALRDADIFVTATGN 88 (162)
T ss_dssp TTSEEEEE---SHHHHHHHHHHHHTT---EEEEE-SSHHHHHHH-HHTT----EEE-------HHHHTTT-SEEEE-SSS
T ss_pred CCCEEEEeCC-CcccHHHHHHHhhCCC--EEEEEECChHHHHHh-hhcC---cEec------CHHHHHhhCCEEEECCCC
Confidence 4568999999 9999999999998887 999999988322111 1111 1121 367899999998887653
No 491
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.53 E-value=0.047 Score=50.14 Aligned_cols=57 Identities=18% Similarity=0.323 Sum_probs=45.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
...++|+|||.||.||..++..|+..+. .|.++... +.++.+.+++||+||.+.|
T Consensus 156 l~Gk~v~vIG~S~ivG~Pla~lL~~~ga--tVtv~~s~-----------------------t~~l~~~~~~ADIVI~avg 210 (284)
T PRK14179 156 LEGKHAVVIGRSNIVGKPMAQLLLDKNA--TVTLTHSR-----------------------TRNLAEVARKADILVVAIG 210 (284)
T ss_pred CCCCEEEEECCCCcCcHHHHHHHHHCCC--EEEEECCC-----------------------CCCHHHHHhhCCEEEEecC
Confidence 3467999999999999999999998886 77766210 1246678999999999998
Q ss_pred CC
Q 023671 119 VP 120 (279)
Q Consensus 119 ~~ 120 (279)
.+
T Consensus 211 ~~ 212 (284)
T PRK14179 211 RG 212 (284)
T ss_pred cc
Confidence 65
No 492
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=95.53 E-value=0.18 Score=41.07 Aligned_cols=115 Identities=19% Similarity=0.200 Sum_probs=69.7
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC----chhHHhhhhcccCCCeEEEEeC-CCCH----------Hhhh
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN----TPGVTADISHMDTGAVVRGFLG-QPQL----------ENAL 107 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~----~~g~~~DL~~~~~~~~v~~~~~-~~d~----------~eal 107 (279)
.+.|+||+|-+|..++..|++++ ...|+++++++ ......++... ..++..+.. ..+. .+..
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g-~~~v~~~~r~~~~~~~~~l~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRG-ARVVILTSRSEDSEGAQELIQELKAP--GAKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-TEEEEEEESSCHHHHHHHHHHHHHHT--TSEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhcC-ceEEEEeeeccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 58899999999999999999984 23889998872 12222333322 133333211 1111 1223
Q ss_pred CCCCEEEEccCCCCCCCC---c---hhhHHHhhHHHHHHHHHHHHHhCCCceEEEecCCC
Q 023671 108 TGMDLVIIPAGVPRKPGM---T---RDDLFNINAGIVRTLCEGIAKCCPNATVNLISNPV 161 (279)
Q Consensus 108 ~~ADiVIitag~~~k~g~---~---r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~TNPv 161 (279)
...|++|.++|....... + -...+..|+.....+.+.+.. .+.+.|+++|...
T Consensus 79 ~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~-~~~g~iv~~sS~~ 137 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLP-QGGGKIVNISSIA 137 (167)
T ss_dssp SSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHH-HTTEEEEEEEEGG
T ss_pred ccccccccccccccccccccccchhhhhccccccceeeeeeehhee-ccccceEEecchh
Confidence 589999999998652211 1 123456676666666666666 4577777777544
No 493
>PRK06823 ornithine cyclodeaminase; Validated
Probab=95.51 E-value=0.061 Score=50.13 Aligned_cols=71 Identities=13% Similarity=0.107 Sum_probs=49.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEcc
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPA 117 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIita 117 (279)
..+++|||+ |..+...+..+..-..+++|.++|++. +...+..+.+. ...+... ++.++++++||+|+.+-
T Consensus 128 ~~~l~iiG~-G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~--~~~v~~~---~~~~~av~~ADIV~taT 200 (315)
T PRK06823 128 VSAIGIVGT-GIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQAL--GFAVNTT---LDAAEVAHAANLIVTTT 200 (315)
T ss_pred CCEEEEECC-cHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhc--CCcEEEE---CCHHHHhcCCCEEEEec
Confidence 458999998 999998887776555578999999987 23333333322 2234432 46789999999999764
No 494
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.51 E-value=0.36 Score=45.01 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=92.2
Q ss_pred ccCCCCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCC--chhHHhhhhcccCCCeEEEEe-CCC---------
Q 023671 34 RAKGGAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVN--TPGVTADISHMDTGAVVRGFL-GQP--------- 101 (279)
Q Consensus 34 ~~~~~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~--~~g~~~DL~~~~~~~~v~~~~-~~~--------- 101 (279)
+..-+.+.+-+.|+||+.-+|..+|..|+.+|. +|++..++. .+..+.++.......++.... .-.
T Consensus 28 ~~~~~~~~~~~vVTGansGIG~eta~~La~~Ga--~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa 105 (314)
T KOG1208|consen 28 THGIDLSGKVALVTGATSGIGFETARELALRGA--HVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFA 105 (314)
T ss_pred eccccCCCcEEEEECCCCchHHHHHHHHHhCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHH
Confidence 333334456788999999999999999999995 999999886 333345555422122222111 001
Q ss_pred -CHHhhhCCCCEEEEccCCCCCCCCchhh----HHHhh----HHHHHHHHHHHHHhCCCceEEEecC-C-------CCch
Q 023671 102 -QLENALTGMDLVIIPAGVPRKPGMTRDD----LFNIN----AGIVRTLCEGIAKCCPNATVNLISN-P-------VNST 164 (279)
Q Consensus 102 -d~~eal~~ADiVIitag~~~k~g~~r~d----~~~~N----~~i~~~i~~~I~~~~p~a~viv~TN-P-------vd~~ 164 (279)
.+......-|+.|..||+...+.....| .+..| .-+.+.+.+.+++..| +.||++|. . -++.
T Consensus 106 ~~~~~~~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~-~RIV~vsS~~~~~~~~~~~l~ 184 (314)
T KOG1208|consen 106 EEFKKKEGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAP-SRIVNVSSILGGGKIDLKDLS 184 (314)
T ss_pred HHHHhcCCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCC-CCEEEEcCccccCccchhhcc
Confidence 1223346889999999986544322111 22334 3567788888887777 65555543 2 1121
Q ss_pred HHHHHHHHHHhCCCCCCCeeeecchhHHHHHHHHHHHcC
Q 023671 165 VPIAAEVFKKAGTYDPKKLLGVTMLDVVRANTFVAEVLG 203 (279)
Q Consensus 165 t~~~~~~~~~~~~~~~~kViG~t~lds~R~~~~la~~l~ 203 (279)
- .+...+...+.++.+.+.-.-+-..+++++.
T Consensus 185 ~-------~~~~~~~~~~~Y~~SKla~~l~~~eL~k~l~ 216 (314)
T KOG1208|consen 185 G-------EKAKLYSSDAAYALSKLANVLLANELAKRLK 216 (314)
T ss_pred c-------hhccCccchhHHHHhHHHHHHHHHHHHHHhh
Confidence 1 1111133334455554444445667777774
No 495
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=95.50 E-value=0.16 Score=39.98 Aligned_cols=72 Identities=26% Similarity=0.329 Sum_probs=39.2
Q ss_pred EEEEEcCCCchHHHHHHHHHhCCCCcEEEEE-eCCCchhHHhhhhcccC-CCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 43 KVAILGAAGGIGQPLAMLMKINPLVSVLHLY-DVVNTPGVTADISHMDT-GAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 43 KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~-D~~~~~g~~~DL~~~~~-~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
||+|+|++|.+|..++..+...+.+ ++..+ +.+...+......+... ......+. ..++. ..++|+||++.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~-~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~DvV~~~~~ 74 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDF-EVVALAASARSAGKRVSEAGPHLKGEVVLELE-PEDFE--ELAVDIVFLALP 74 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCc-eEEEEEechhhcCcCHHHHCcccccccccccc-cCChh--hcCCCEEEEcCC
Confidence 6899998799999999888875433 45444 65432232221111110 00001111 12332 358999999863
No 496
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=95.48 E-value=0.051 Score=51.24 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCC
Q 023671 40 AGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVV 76 (279)
Q Consensus 40 ~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~ 76 (279)
+++||+|+||+|++|+.++..|...+.. ||++++..
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~-el~~~~~s 37 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWF-EVTALAAS 37 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCc-eEEEEEcC
Confidence 3579999999999999999988876543 88888443
No 497
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=95.47 E-value=0.17 Score=55.68 Aligned_cols=117 Identities=11% Similarity=0.010 Sum_probs=68.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHhCC--CCcEEEEEeCCCchhH-Hhhhhcc---------cCCCeEEEEeCC--------
Q 023671 41 GFKVAILGAAGGIGQPLAMLMKINP--LVSVLHLYDVVNTPGV-TADISHM---------DTGAVVRGFLGQ-------- 100 (279)
Q Consensus 41 ~~KI~IIGA~G~VG~~la~~L~~~~--~~~ev~L~D~~~~~g~-~~DL~~~---------~~~~~v~~~~~~-------- 100 (279)
.++|.|+||+|++|++++..|+..+ ...+|+...+...... ...+.+. ....++..+.+.
T Consensus 971 ~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lgl 1050 (1389)
T TIGR03443 971 PITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFGL 1050 (1389)
T ss_pred CceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCCc
Confidence 4689999999999999999888776 3336766666431111 1111110 000123322110
Q ss_pred --CCHHhhhCCCCEEEEccCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEec
Q 023671 101 --PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLIS 158 (279)
Q Consensus 101 --~d~~eal~~ADiVIitag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~T 158 (279)
..+.+...++|+||++|+... ......++...|+...+++++...+.....++.+.|
T Consensus 1051 ~~~~~~~l~~~~d~iiH~Aa~~~-~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS 1109 (1389)
T TIGR03443 1051 SDEKWSDLTNEVDVIIHNGALVH-WVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSS 1109 (1389)
T ss_pred CHHHHHHHHhcCCEEEECCcEec-CccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeC
Confidence 123344578999999987542 222334444569999999999888655444444444
No 498
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=95.46 E-value=0.043 Score=51.32 Aligned_cols=67 Identities=15% Similarity=0.151 Sum_probs=47.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEEEeCCCCHHhhhCCCCEEEEccC
Q 023671 39 AAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRGFLGQPQLENALTGMDLVIIPAG 118 (279)
Q Consensus 39 ~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~~~~~~d~~eal~~ADiVIitag 118 (279)
.+.++|+|||- |.+|..+|..|...|+ +|+.+|... ...+...... ... .++.++++.||+|+++..
T Consensus 14 LkgKtVGIIG~-GsIG~amA~nL~d~G~--~ViV~~r~~---~s~~~A~~~G---~~v----~sl~Eaak~ADVV~llLP 80 (335)
T PRK13403 14 LQGKTVAVIGY-GSQGHAQAQNLRDSGV--EVVVGVRPG---KSFEVAKADG---FEV----MSVSEAVRTAQVVQMLLP 80 (335)
T ss_pred hCcCEEEEEeE-cHHHHHHHHHHHHCcC--EEEEEECcc---hhhHHHHHcC---CEE----CCHHHHHhcCCEEEEeCC
Confidence 45679999999 9999999999999998 999998542 1111111111 111 146789999999999863
No 499
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.46 E-value=0.065 Score=49.73 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=63.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHhCCCCcEEEEEeCCCchhHHhhhhcccCCCeEEE-EeCCCCHHhhhCCCCEEEEc
Q 023671 38 GAAGFKVAILGAAGGIGQPLAMLMKINPLVSVLHLYDVVNTPGVTADISHMDTGAVVRG-FLGQPQLENALTGMDLVIIP 116 (279)
Q Consensus 38 ~~~~~KI~IIGA~G~VG~~la~~L~~~~~~~ev~L~D~~~~~g~~~DL~~~~~~~~v~~-~~~~~d~~eal~~ADiVIit 116 (279)
+.++-||+|||+ |.||.+-|......+ .+|.++|.+..+-.-+ .+.. ..++.. .+...+++++++.+|+||-+
T Consensus 165 GV~~~kv~iiGG-GvvgtnaAkiA~glg--A~Vtild~n~~rl~~l--dd~f-~~rv~~~~st~~~iee~v~~aDlvIga 238 (371)
T COG0686 165 GVLPAKVVVLGG-GVVGTNAAKIAIGLG--ADVTILDLNIDRLRQL--DDLF-GGRVHTLYSTPSNIEEAVKKADLVIGA 238 (371)
T ss_pred CCCCccEEEECC-ccccchHHHHHhccC--CeeEEEecCHHHHhhh--hHhh-CceeEEEEcCHHHHHHHhhhccEEEEE
Confidence 455679999999 999999988776444 4999999975211111 1111 233333 23345788999999999988
Q ss_pred cCCCCCCCCchhhHHHhhHHHHHHHHHHHHHhCCCceEEEe
Q 023671 117 AGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNATVNLI 157 (279)
Q Consensus 117 ag~~~k~g~~r~d~~~~N~~i~~~i~~~I~~~~p~a~viv~ 157 (279)
.-+|..... .-+.++..+.|+ |.++++=+
T Consensus 239 VLIpgakaP---------kLvt~e~vk~Mk---pGsVivDV 267 (371)
T COG0686 239 VLIPGAKAP---------KLVTREMVKQMK---PGSVIVDV 267 (371)
T ss_pred EEecCCCCc---------eehhHHHHHhcC---CCcEEEEE
Confidence 655522111 123455555555 66666543
No 500
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.45 E-value=0.4 Score=42.27 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCC--chHHHHHHHHHhCCCCcEEEEEeCC
Q 023671 40 AGFKVAILGAAG--GIGQPLAMLMKINPLVSVLHLYDVV 76 (279)
Q Consensus 40 ~~~KI~IIGA~G--~VG~~la~~L~~~~~~~ev~L~D~~ 76 (279)
+.++|.|+||+| .+|..++..|+..|. +|++++++
T Consensus 4 ~~k~vlItGas~~~giG~~la~~l~~~G~--~vi~~~r~ 40 (256)
T PRK12748 4 MKKIALVTGASRLNGIGAAVCRRLAAKGI--DIFFTYWS 40 (256)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHcCC--cEEEEcCC
Confidence 345899999974 699999999999997 89999876
Done!