BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023672
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 57/251 (22%), Positives = 107/251 (42%), Gaps = 42/251 (16%)
Query: 45 RTYHFYNQ----FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIF------------- 87
+T +N+ +T + ++ ++G+ +SPDG + ++S+DKT++++
Sbjct: 202 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 261
Query: 88 SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS-----ASDPTSCVFA 142
S NG+++ + ++A D L G+ + H S A P A
Sbjct: 262 SSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLT--GHSSSVWGVAFSPDGQTIA 319
Query: 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDV 201
S + D + LW+ R ++ + VAF+P G I A +K+V++++
Sbjct: 320 SASDDKTVKLWN------RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN- 372
Query: 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261
R+ + TL G+ G +AFSP +A S +T ++ N +LL L
Sbjct: 373 ----RNGQLLQTLTGHSSSVRG----VAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTL 422
Query: 262 HGQEGGVTHVS 272
G V V+
Sbjct: 423 TGHSSSVWGVA 433
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 98/229 (42%), Gaps = 38/229 (16%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-------------GISYDVNACSLAKDQDS 109
++G+ +SPDG + ++S+DKT+++++ G+++ + ++A D
Sbjct: 19 VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 78
Query: 110 YEASLVVTEGESVYDFCWFPHMS-----ASDPTSCVFASTTRDHPIHLWDATTGLLRCTY 164
L G+ + H S A P AS + D + LW+ LL+
Sbjct: 79 KTVKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT 136
Query: 165 RAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223
+V + VAF+P G I A +K+V++++ R+ + TL G+ G
Sbjct: 137 GHSSSV------WGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVWG 185
Query: 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272
+AFSP +A S +T ++ N +LL L G V V+
Sbjct: 186 ----VAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 228
Score = 34.7 bits (78), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 27/155 (17%)
Query: 65 GIKWSPDGSSFLTSSEDKTLRIF-------------SLPENGISYDVNACSLAKDQDSYE 111
G+ +SPD + ++S+DKT++++ S G+++ + ++A D
Sbjct: 431 GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 490
Query: 112 ASLVVTEGESVYDFCWFPHMS-----ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA 166
L G+ + H S A P AS + D + LW+ LL+
Sbjct: 491 VKLWNRNGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 548
Query: 167 YDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFD 200
+V + VAF+P G I A +K+V++++
Sbjct: 549 SSSV------WGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG+ T A+ D ++A V FN G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 165 SLIVSSSYDGLCRIWD 180
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 61/136 (44%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I +DV S L +G S Y F
Sbjct: 74 VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG+ T A+ D ++A V FN G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 165 SLIVSSSYDGLCRIWD 180
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 40.8 bits (94), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 38/155 (24%)
Query: 52 QFRTSSIPNN--FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109
TSS P++ +++ + +SPDG T +ED+ +RI+ + I
Sbjct: 113 NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI--------------- 157
Query: 110 YEASLVVTEG--ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167
+++ +G + +Y +FP S + D + +WD TG T
Sbjct: 158 ----VMILQGHEQDIYSLDYFPSGDK-------LVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 168 DAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFD 200
D V +VA +P G I AG +++VRV+D
Sbjct: 207 DGV------TTVAVSPGDGKYIAAGSLDRAVRVWD 235
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 165 SLIVSSSYDGLCRIWD 180
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 74 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 165 SLIVSSSYDGLCRIWD 180
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I +DV S L +G S Y F
Sbjct: 74 VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 114
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 115 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 164
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 165 SLIVSSSYDGLCRIWD 180
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 88 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 128
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 129 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 178
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 179 SLIVSSSYDGLCRIWD 194
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 111
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 112 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 161
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 162 SLIVSSSYDGLCRIWD 177
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 77 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 117
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 118 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 167
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 168 SLIVSSSYDGLCRIWD 183
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 72 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 112
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 113 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 162
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 163 SLIVSSSYDGLCRIWD 178
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 76 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 116
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 117 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 166
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 167 SLIVSSSYDGLCRIWD 182
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 71 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 111
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 112 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 161
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 162 SLIVSSSYDGLCRIWD 177
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I +DV S L +G S Y F
Sbjct: 95 VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 135
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 136 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 185
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 186 SLIVSSSYDGLCRIWD 201
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I +DV S L +G S Y F
Sbjct: 77 VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 117
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 118 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 167
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 168 SLIVSSSYDGLCRIWD 183
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 67 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 107
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 108 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 157
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 158 SLIVSSSYDGLCRIWD 173
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 70 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 110
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 111 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 160
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 161 SLIVSSSYDGLCRIWD 176
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 59/136 (43%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I+ + S L +G S Y F
Sbjct: 93 VAWSSDSNLLVSASDDKTLKIWDV-------------------SSGKCLKTLKGHSNYVF 133
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 134 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 183
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 184 SLIVSSSYDGLCRIWD 199
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 60/136 (44%), Gaps = 30/136 (22%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
+ WS D + +++S+DKTL+I +DV S L +G S Y F
Sbjct: 77 VAWSSDSNLLVSASDDKTLKI---------WDV----------SSGKCLKTLKGHSNYVF 117
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185
C +P S + S + D + +WD TG T A+ D ++A V FN G
Sbjct: 118 C-----CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHS--DPVSA---VHFNRDG 167
Query: 186 TKIF-AGYNKSVRVFD 200
+ I + Y+ R++D
Sbjct: 168 SLIVSSSYDGLCRIWD 183
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 25/27 (92%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIF 87
+++ G+ +SPDGSSFLTSS+D+T+R++
Sbjct: 889 SWVHGVMFSPDGSSFLTSSDDQTIRLW 915
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 67/151 (44%), Gaps = 31/151 (20%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA-SLVVTEG 119
N +K + W+P G+ T S DK++ ++ + E +D YE S++ +
Sbjct: 106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDE---------------EDEYECVSVLNSHT 150
Query: 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAF 177
+ V W P + AS + D + L+ C T ++ + +
Sbjct: 151 QDVKHVVWHPSQE-------LLASASYDDTVKLYREEEDDWVCCATLEGHE-----STVW 198
Query: 178 SVAFNPTGTKIFAGY-NKSVRVFDVHRPGRD 207
S+AF+P+G ++ + +++VR++ + PG +
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIWRQYLPGNE 229
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/214 (21%), Positives = 84/214 (39%), Gaps = 37/214 (17%)
Query: 68 WSPDGSSFLTSS-----EDKTLRIFSLPENG-----ISYDVNACSLAKDQDSYEASLVVT 117
W +G S++ S +T+R + G S+D C K+QD +E +
Sbjct: 43 WGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE 102
Query: 118 EGES-VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAA 176
E+ V W P + + A+ +RD + +W+ Y ++ T
Sbjct: 103 GHENEVKSVAWAPSGN-------LLATCSRDKSVWVWEVDEED---EYECVSVLNSHTQD 152
Query: 177 FS-VAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234
V ++P+ + A Y+ +V+++ R+ E EG + ++AF P+
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLY------REEEDDWVCCATLEGHESTVWSLAFDPSG 206
Query: 235 TGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV 268
LA S +T I+R+ L G E GV
Sbjct: 207 Q-RLASCSDDRTVRIWRQ-------YLPGNEQGV 232
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 25/27 (92%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIF 87
+++ G+ +SPDGSSFLT+S+D+T+R++
Sbjct: 890 SWVHGVMFSPDGSSFLTASDDQTIRVW 916
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 25/27 (92%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIF 87
+++ G+ +SPDGSSFLT+S+D+T+R++
Sbjct: 883 SWVHGVMFSPDGSSFLTASDDQTIRVW 909
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 72/172 (41%), Gaps = 35/172 (20%)
Query: 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSL--PENGISYDVN----AC-SLAKDQDSYEA 112
+N+++ K PDG + + E TL I+ L P I ++ AC +LA DS
Sbjct: 97 DNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVC 156
Query: 113 SLVVTEGE-SVYDFCWFPH--------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCT 163
++G +V+D H +D SC+ S + LW TG L T
Sbjct: 157 FSCCSDGNIAVWDL----HNQTLVRQFQGHTDGASCIDIS---NDGTKLW---TGGLDNT 206
Query: 164 YRAYDAV--------DEITAAFSVAFNPTGTKIFAGYNKS-VRVFDVHRPGR 206
R++D D + FS+ + PTG + G S V V V++P +
Sbjct: 207 VRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK 258
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 34.3 bits (77), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 20/93 (21%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE 120
N +KG+ WS DG T S DK++ I+ E+G Y+ S++ +
Sbjct: 108 NEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYEC-------------ISVLQEHSQ 154
Query: 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLW 153
V W P+ + AS++ D + +W
Sbjct: 155 DVKHVIWH-------PSEALLASSSYDDTVRIW 180
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 8/61 (13%)
Query: 225 MSAIAFSPTHTGMLAIGSYSQTSAIYRED-------NMELLYVLHGQEGGVTHVSKLSSA 277
+ ++A+ P HT +LA GS+ T +I+ ++ M+LL ++ G E V V+ +
Sbjct: 61 IRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 278 Y 278
Y
Sbjct: 120 Y 120
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107
G+ WSPDG+ ++S DKT++I+++ + + + +DQ
Sbjct: 244 GLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYR--AYDAVDEITAAFSVAFNPTG 185
F H +P +FAST D I L++ G + + V + F + ++P G
Sbjct: 192 FVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG 251
Query: 186 TKIF-AGYNKSVRVFDV 201
TKI A +K++++++V
Sbjct: 252 TKIASASADKTIKIWNV 268
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS-PTHTGMLAIGSYSQTSAIYR 251
++SV++FDV G+ L + G G + +A++ P + +LA SY + I+R
Sbjct: 34 DRSVKIFDVRNGGQ------ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR 87
Query: 252 EDN 254
E+N
Sbjct: 88 EEN 90
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 71/181 (39%), Gaps = 39/181 (21%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLP-------ENGISYDVNACSLAKDQDSYEASLVVTE 118
+ +SPD ++ D LR++++ G D +C + S +A ++V+
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSC--VRFSPSLDAPVIVSG 172
Query: 119 G----ESVYDFC-------------WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR 161
G V+D + ++ S P + AS+ +D LWD T G
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVS-PDGSLCASSDKDGVARLWDLTKG--- 228
Query: 162 CTYRAYDAVDEITAAF---SVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218
+A+ E+ A + F+P + A K +R+FD+ E +G+K
Sbjct: 229 ------EALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPEHQGSK 282
Query: 219 E 219
+
Sbjct: 283 K 283
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPEN 92
I WS DGS+ + D +R++ + EN
Sbjct: 291 IAWSADGSTLYSGYTDNVIRVWGVSEN 317
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 36/163 (22%)
Query: 39 FDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV 98
FD+ + H ++P ++ + +SPD +T+S+D ++I YDV
Sbjct: 191 FDIATGKLLH---TLEGHAMP---IRSLTFSPDSQLLVTASDDGYIKI---------YDV 235
Query: 99 NACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG 158
+LA S AS V+ FC P F S++ D + +WD G
Sbjct: 236 QHANLAGTL-SGHASWVLNVA-----FC---------PDDTHFVSSSSDKSVKVWD--VG 278
Query: 159 LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFD 200
C + +D D++ + V +N G+KI + G ++ + ++D
Sbjct: 279 TRTCVHTFFDHQDQV---WGVKYNGNGSKIVSVGDDQEIHIYD 318
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRA--YDAVDEITAAFSVAFNPTGTKIFAGYN 193
P+ FAS + D L+D LR Y I A SV F+ +G +FAGYN
Sbjct: 250 PSGDAFASGSDDATCRLYD-----LRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 194 K-SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 250
++ V+DV + R S L G++ +S + SP T + GS+ T ++
Sbjct: 305 DYTINVWDVLKGSR----VSILFGHENR----VSTLRVSPDGTAFCS-GSWDHTLRVW 353
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFS 88
N + ++ SPDG++F + S D TLR+++
Sbjct: 327 NRVSTLRVSPDGTAFCSGSWDHTLRVWA 354
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/258 (21%), Positives = 104/258 (40%), Gaps = 59/258 (22%)
Query: 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP-----ENGISYDVNACSLAKDQDSYEASL 114
N+F+ + S + ++SS DKTLR++ L + + + S+A D+ +
Sbjct: 76 NHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILS 135
Query: 115 VVTEGE----SVYDFCWFPHMSA---SDPTSCV------------------FASTTRDHP 149
E E ++ C F SD SCV FAS D
Sbjct: 136 AGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGR 195
Query: 150 IHLWDATTGLLRCTYRAYDA-VDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR---PG 205
+ +W+ T +R T++A+++ V+ ++ + + + TG G +K + ++D+ P
Sbjct: 196 LKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATG-----GKDKKLLIWDILNLTYPQ 249
Query: 206 RDFEKYSTLKGNKEGQAGIMSAIAFSP--------THTGMLAIGSYSQTSAIYREDNMEL 257
R+F+ ST+ + IAF+P T G+ +Q+ A E
Sbjct: 250 REFDAGSTI-----------NQIAFNPKLQWVAVGTDQGVKIFNLMTQSKAPVCTIEAEP 298
Query: 258 LYVLHGQEGGVTHVSKLS 275
+ GQ+G + L+
Sbjct: 299 ITKAEGQKGKNPQCTSLA 316
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI 249
GR ++S L K G AG++ I+F T ML I + A+
Sbjct: 317 GRIVPRFSELTAEKLGFAGLVKEISFGTTKDKMLVIEQCKNSRAV 361
>pdb|2FUG|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|3 Chain 3, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|C Chain C, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|L Chain L, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|U Chain U, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|3 Chain 3, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|C Chain C, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|3 Chain 3, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|3 Chain 3, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|D Chain D, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 783
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 188 IFAGYN----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227
+FA Y K + +VHRPG + E L G+KEG + A
Sbjct: 450 LFAPYRAPLMKWAAIHEVHRPGEEREILLALLGDKEGSEMVAKA 493
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 59/148 (39%), Gaps = 22/148 (14%)
Query: 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD------VNACSLAKDQDSYEAS 113
+++ ++ + DG+ + S D+T+R++ + + V C + SY +
Sbjct: 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 293
Query: 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173
T E+ S S +RD I +WD +TG+ T +D
Sbjct: 294 SEATGSET----------KKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHD----- 338
Query: 174 TAAFSVAFNPTGTKIFA-GYNKSVRVFD 200
V F+ G I + +K++RV+D
Sbjct: 339 NWVRGVLFHSGGKFILSCADDKTLRVWD 366
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 37 IRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSL 89
+R RTYH + + +K+ PDG F T S+D T R+F +
Sbjct: 235 LRITSRAVRTYHGHE---------GDINSVKFFPDGQRFGTGSDDGTCRLFDM 278
>pdb|1QHU|A Chain A, Mammalian Blood Serum Haemopexin Deglycosylated And In
Complex With Its Ligand Haem
pdb|1QJS|A Chain A, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
pdb|1QJS|B Chain B, Mammalian Blood Serum Haemopexin Glycosylated-Native
Protein And In Complex With Its Ligand Haem
Length = 460
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 152 LWDATTGLLRCTYRAYDAVDEITAAFS-------------VAFNPTGTKIFAGYNKSVRV 198
WD TTG + R++ AV T+A + FNP ++ GY VR
Sbjct: 171 FWDLTTGTKK--ERSWPAVGNCTSALRWLGRYYCFQGNQFLRFNPVSGEVPPGYPLDVRD 228
Query: 199 FDVHRPGR 206
+ + PGR
Sbjct: 229 YFLSCPGR 236
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/185 (19%), Positives = 74/185 (40%), Gaps = 33/185 (17%)
Query: 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134
L++S DKT+ ++ L + +Y + +L ++ ++G+ W
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW------- 83
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193
D + LWD TTG T R + V SVAF+ +I +G +
Sbjct: 84 ------------DGTLRLWDLTTGT---TTRRF--VGHTKDVLSVAFSSDNRQIVSGSRD 126
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRE 252
K++++++ KY+ E + +S + FSP + + + + + ++
Sbjct: 127 KTIKLWNT----LGVCKYTV---QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 253 DNMEL 257
N +L
Sbjct: 180 ANCKL 184
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 64/159 (40%), Gaps = 32/159 (20%)
Query: 75 FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134
L++S DKT+ ++ L + +Y + +L ++ ++G+ W
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW------- 106
Query: 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193
D + LWD TTG T R + V SVAF+ +I +G +
Sbjct: 107 ------------DGTLRLWDLTTG---TTTRRF--VGHTKDVLSVAFSSDNRQIVSGSRD 149
Query: 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232
K++++++ KY+ E + +S + FSP
Sbjct: 150 KTIKLWNT----LGVCKYTV---QDESHSEWVSCVRFSP 181
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 38/93 (40%), Gaps = 13/93 (13%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDF 125
I W PD +S ++D+TLR EN + V ++D YE E F
Sbjct: 226 IVWGPDHTSLFYVTKDETLR-----ENKVWRHVMGKLQSEDVCLYE--------EHNPLF 272
Query: 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTG 158
F + +A T C+ + + +HL D G
Sbjct: 273 SAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 28.1 bits (61), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 53/140 (37%), Gaps = 21/140 (15%)
Query: 66 IKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
I W P + + S SED T+ ++ +P+ G+ + + + + +V
Sbjct: 87 IAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV--------- 137
Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
W P V S D+ I +WD TG T D I +SV ++
Sbjct: 138 -AWHPTAQN------VLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTI---YSVDWSRD 187
Query: 185 GTKIFAG-YNKSVRVFDVHR 203
G I +K VRV + +
Sbjct: 188 GALICTSCRDKRVRVIEPRK 207
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSLPEN 92
+ WS DGS T+S DKT +++ L N
Sbjct: 92 VCWSDDGSKVFTASCDKTAKMWDLSSN 118
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSL 89
+ I + P+G++F T S+D T R+F L
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSL 89
+ I + P+G++F T S+D T R+F L
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSL 89
+ I + P+G++F T S+D T R+F L
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSL 89
+ I + P+G++F T S+D T R+F L
Sbjct: 240 INAICFFPNGNAFATGSDDATCRLFDL 266
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 63 LKGIKWSPDGSSFLTSSEDKTLRIFSL 89
+ I + P+G++F T S+D T R+F L
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDL 255
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 54/140 (38%), Gaps = 21/140 (15%)
Query: 66 IKWSPDGSSFLTS-SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD 124
I W P + + S SED T+ ++ +P+ G+ + + + + +V
Sbjct: 87 IAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA-------- 138
Query: 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184
W P V S D+ I +WD TG T D I +SV ++
Sbjct: 139 --WHPTAQN------VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI---YSVDWSRD 187
Query: 185 GTKIF-AGYNKSVRVFDVHR 203
G I + +K VRV + +
Sbjct: 188 GALICTSCRDKRVRVIEPRK 207
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 27.3 bits (59), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 66 IKWSPDGSSFLTSSEDKTLRIFSL 89
++WSPDGS S+ TL +F +
Sbjct: 230 MRWSPDGSKLAVVSDKWTLHVFEV 253
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/74 (21%), Positives = 28/74 (37%), Gaps = 5/74 (6%)
Query: 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-----ISYDVNACSLAKDQDSYEASL 114
N + GI W+PD + +T D+ +++L + +N + E
Sbjct: 52 NGQVTGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKF 111
Query: 115 VVTEGESVYDFCWF 128
V G V C+F
Sbjct: 112 AVGSGSRVISICYF 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,001,221
Number of Sequences: 62578
Number of extensions: 319343
Number of successful extensions: 978
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 856
Number of HSP's gapped (non-prelim): 125
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)