Query 023672
Match_columns 279
No_of_seqs 420 out of 1695
Neff 11.8
Searched_HMMs 46136
Date Fri Mar 29 05:46:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.7E-39 5.8E-44 239.3 19.9 214 32-278 135-464 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 1.3E-38 2.8E-43 238.1 15.2 202 35-279 242-444 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-37 3.1E-42 232.5 13.6 200 35-278 198-401 (459)
4 KOG0279 G protein beta subunit 100.0 2.9E-34 6.2E-39 204.4 22.1 210 30-278 34-246 (315)
5 KOG0263 Transcription initiati 100.0 2.9E-35 6.3E-40 235.7 16.9 187 54-278 445-632 (707)
6 KOG0271 Notchless-like WD40 re 100.0 6.3E-34 1.4E-38 211.0 19.0 189 49-276 104-299 (480)
7 KOG0279 G protein beta subunit 100.0 1.7E-33 3.7E-38 200.5 19.3 202 34-279 85-297 (315)
8 KOG0315 G-protein beta subunit 100.0 2.6E-32 5.7E-37 191.6 22.3 209 35-279 62-272 (311)
9 KOG0286 G-protein beta subunit 100.0 1.7E-31 3.8E-36 191.5 25.4 191 51-278 46-242 (343)
10 KOG0286 G-protein beta subunit 100.0 1.3E-31 2.8E-36 192.1 23.1 205 38-278 123-328 (343)
11 KOG0285 Pleiotropic regulator 100.0 5E-32 1.1E-36 199.4 17.7 191 49-277 140-331 (460)
12 KOG0295 WD40 repeat-containing 100.0 1.2E-31 2.5E-36 197.6 16.5 205 33-279 129-348 (406)
13 KOG0645 WD40 repeat protein [G 100.0 6.2E-30 1.3E-34 181.7 24.0 195 53-278 7-208 (312)
14 KOG0284 Polyadenylation factor 100.0 2E-32 4.4E-37 204.4 10.6 184 55-276 133-317 (464)
15 KOG0263 Transcription initiati 100.0 5.7E-31 1.2E-35 211.3 18.9 199 60-279 378-591 (707)
16 KOG0265 U5 snRNP-specific prot 100.0 3.4E-30 7.4E-35 185.5 19.4 188 54-279 41-230 (338)
17 KOG0273 Beta-transducin family 100.0 1E-29 2.3E-34 193.1 21.1 187 60-279 235-466 (524)
18 KOG0273 Beta-transducin family 100.0 1.7E-29 3.8E-34 191.9 21.6 214 35-278 258-506 (524)
19 KOG0291 WD40-repeat-containing 100.0 2.1E-29 4.5E-34 201.6 22.0 186 55-278 345-533 (893)
20 KOG0266 WD40 repeat-containing 100.0 6.5E-29 1.4E-33 202.1 24.4 189 55-278 198-392 (456)
21 KOG0295 WD40 repeat-containing 100.0 9.1E-30 2E-34 187.7 17.3 190 50-277 183-388 (406)
22 KOG0266 WD40 repeat-containing 100.0 5.2E-29 1.1E-33 202.7 22.8 189 55-279 153-348 (456)
23 KOG0282 mRNA splicing factor [ 100.0 1.9E-30 4.2E-35 197.6 12.7 206 35-277 238-486 (503)
24 KOG0315 G-protein beta subunit 100.0 8.5E-29 1.8E-33 174.1 19.9 211 26-279 12-229 (311)
25 KOG0313 Microtubule binding pr 100.0 5.9E-29 1.3E-33 184.4 19.9 202 56-276 189-400 (423)
26 KOG0284 Polyadenylation factor 100.0 1.7E-30 3.7E-35 194.1 11.8 187 55-278 174-363 (464)
27 KOG0296 Angio-associated migra 100.0 2.3E-28 5E-33 180.4 21.9 206 35-278 87-381 (399)
28 KOG0265 U5 snRNP-specific prot 100.0 1.5E-28 3.1E-33 177.1 18.9 238 28-277 63-320 (338)
29 KOG0316 Conserved WD40 repeat- 100.0 1.9E-28 4.1E-33 171.1 17.9 184 55-278 12-196 (307)
30 KOG0319 WD40-repeat-containing 100.0 1.9E-28 4.1E-33 195.6 18.0 196 53-277 404-601 (775)
31 PTZ00421 coronin; Provisional 100.0 3.8E-27 8.1E-32 191.4 25.2 194 55-278 70-272 (493)
32 KOG0310 Conserved WD40 repeat- 100.0 1.6E-27 3.5E-32 182.0 20.6 201 35-279 91-293 (487)
33 KOG0276 Vesicle coat complex C 100.0 5.1E-28 1.1E-32 190.1 17.9 204 31-276 74-280 (794)
34 KOG0640 mRNA cleavage stimulat 100.0 1.4E-28 3.1E-33 178.3 13.2 209 55-279 107-319 (430)
35 KOG0643 Translation initiation 100.0 6.3E-27 1.4E-31 166.3 20.6 167 55-259 47-226 (327)
36 KOG0645 WD40 repeat protein [G 100.0 3.4E-26 7.3E-31 162.8 23.1 203 31-274 34-242 (312)
37 KOG0289 mRNA splicing factor [ 100.0 7.2E-27 1.6E-31 176.2 20.8 203 35-279 242-446 (506)
38 KOG0281 Beta-TrCP (transducin 100.0 6.3E-29 1.4E-33 182.8 9.5 194 30-275 213-410 (499)
39 KOG1407 WD40 repeat protein [F 100.0 2E-27 4.4E-32 168.2 16.4 198 54-279 14-245 (313)
40 KOG0277 Peroxisomal targeting 100.0 3.8E-27 8.2E-32 166.2 17.6 183 60-277 60-246 (311)
41 KOG0275 Conserved WD40 repeat- 100.0 1.1E-28 2.5E-33 180.1 9.8 189 58-276 211-403 (508)
42 KOG0285 Pleiotropic regulator 100.0 2.1E-27 4.5E-32 175.2 16.0 200 34-278 173-373 (460)
43 KOG0646 WD40 repeat protein [G 100.0 3.9E-27 8.4E-32 179.0 17.8 215 35-275 104-329 (476)
44 KOG0278 Serine/threonine kinas 100.0 1.1E-27 2.3E-32 168.8 13.1 205 28-278 75-280 (334)
45 KOG0316 Conserved WD40 repeat- 100.0 1E-26 2.2E-31 162.5 17.8 204 27-276 74-281 (307)
46 PTZ00420 coronin; Provisional 100.0 1.4E-25 3E-30 183.4 26.9 178 54-262 68-258 (568)
47 KOG0288 WD40 repeat protein Ti 100.0 4E-27 8.8E-32 176.4 16.3 205 31-279 238-445 (459)
48 KOG0277 Peroxisomal targeting 100.0 1.6E-27 3.4E-32 168.2 13.1 201 35-276 84-289 (311)
49 KOG0293 WD40 repeat-containing 100.0 7.3E-27 1.6E-31 175.3 16.9 196 51-277 260-494 (519)
50 KOG0282 mRNA splicing factor [ 100.0 7.3E-28 1.6E-32 183.6 11.1 190 52-279 206-399 (503)
51 KOG2919 Guanine nucleotide-bin 100.0 1.9E-26 4.2E-31 168.0 17.7 248 25-278 16-263 (406)
52 cd00200 WD40 WD40 domain, foun 100.0 1.7E-25 3.6E-30 172.7 24.2 186 55-278 4-190 (289)
53 KOG0318 WD40 repeat stress pro 100.0 1.7E-25 3.7E-30 172.6 23.6 228 34-278 212-543 (603)
54 KOG0772 Uncharacterized conser 100.0 3.3E-27 7.1E-32 181.7 14.1 212 55-278 162-422 (641)
55 KOG0264 Nucleosome remodeling 100.0 1.8E-26 3.9E-31 174.8 17.7 215 35-277 148-385 (422)
56 KOG0283 WD40 repeat-containing 99.9 4.1E-26 8.9E-31 184.9 20.7 198 55-276 261-512 (712)
57 cd00200 WD40 WD40 domain, foun 99.9 4.8E-25 1E-29 170.1 25.2 200 35-278 74-274 (289)
58 PLN00181 protein SPA1-RELATED; 99.9 3E-25 6.5E-30 193.1 26.5 204 35-279 556-777 (793)
59 KOG0281 Beta-TrCP (transducin 99.9 1.4E-27 3.1E-32 175.7 10.2 196 30-274 253-458 (499)
60 KOG0291 WD40-repeat-containing 99.9 1.2E-25 2.6E-30 180.3 21.8 184 58-278 305-491 (893)
61 PLN00181 protein SPA1-RELATED; 99.9 2.4E-25 5.1E-30 193.8 25.7 190 56-275 479-671 (793)
62 KOG0292 Vesicle coat complex C 99.9 2.5E-26 5.5E-31 187.2 17.8 206 35-276 32-261 (1202)
63 PTZ00421 coronin; Provisional 99.9 7.9E-25 1.7E-29 177.9 26.3 208 34-276 98-314 (493)
64 KOG0306 WD40-repeat-containing 99.9 4E-26 8.7E-31 182.9 18.3 193 55-279 449-648 (888)
65 KOG2096 WD40 repeat protein [G 99.9 1.3E-25 2.8E-30 163.6 17.9 208 37-253 64-308 (420)
66 KOG0319 WD40-repeat-containing 99.9 5.2E-26 1.1E-30 181.8 17.3 204 35-278 347-560 (775)
67 KOG0283 WD40 repeat-containing 99.9 9.6E-26 2.1E-30 182.7 18.0 195 51-279 360-560 (712)
68 KOG1446 Histone H3 (Lys4) meth 99.9 1.3E-24 2.9E-29 157.9 21.6 191 52-276 92-286 (311)
69 KOG0292 Vesicle coat complex C 99.9 4.5E-25 9.8E-30 180.1 21.4 207 29-277 68-304 (1202)
70 PTZ00420 coronin; Provisional 99.9 4E-24 8.6E-29 174.9 27.0 213 33-277 96-318 (568)
71 KOG0318 WD40 repeat stress pro 99.9 2.2E-24 4.7E-29 166.6 23.2 208 55-279 54-334 (603)
72 KOG4283 Transcription-coupled 99.9 4.1E-25 8.9E-30 159.4 18.0 203 55-279 38-260 (397)
73 KOG0643 Translation initiation 99.9 1.1E-24 2.4E-29 154.9 19.1 190 55-279 5-204 (327)
74 KOG0296 Angio-associated migra 99.9 1.7E-24 3.7E-29 160.1 19.7 171 55-263 59-230 (399)
75 KOG0305 Anaphase promoting com 99.9 1E-24 2.2E-29 172.1 18.5 199 35-278 198-400 (484)
76 KOG0267 Microtubule severing p 99.9 3.5E-26 7.7E-31 182.4 10.2 186 55-278 65-251 (825)
77 KOG0647 mRNA export protein (c 99.9 1.4E-24 3E-29 156.9 17.1 195 55-279 22-307 (347)
78 KOG0973 Histone transcription 99.9 1.4E-24 3.1E-29 180.4 19.6 209 55-278 64-338 (942)
79 KOG0772 Uncharacterized conser 99.9 2.5E-25 5.4E-30 171.5 13.9 198 55-276 263-468 (641)
80 KOG0641 WD40 repeat protein [G 99.9 2.8E-23 6.1E-28 144.8 22.7 207 54-277 83-331 (350)
81 KOG1407 WD40 repeat protein [F 99.9 4E-24 8.7E-29 151.6 17.7 222 30-277 38-284 (313)
82 KOG0269 WD40 repeat-containing 99.9 3.6E-25 7.8E-30 177.9 13.4 185 62-279 89-277 (839)
83 KOG0308 Conserved WD40 repeat- 99.9 1.2E-24 2.6E-29 171.9 15.8 216 31-276 44-266 (735)
84 KOG0276 Vesicle coat complex C 99.9 4.5E-24 9.6E-29 168.2 18.8 187 55-277 8-195 (794)
85 KOG1446 Histone H3 (Lys4) meth 99.9 6.9E-23 1.5E-27 149.1 23.3 202 59-279 13-246 (311)
86 KOG0274 Cdc4 and related F-box 99.9 5.8E-24 1.3E-28 173.3 19.3 190 36-273 230-421 (537)
87 KOG0275 Conserved WD40 repeat- 99.9 8.6E-25 1.9E-29 159.9 12.7 212 35-276 236-490 (508)
88 KOG0310 Conserved WD40 repeat- 99.9 6.5E-24 1.4E-28 162.4 18.0 200 35-278 49-251 (487)
89 KOG0269 WD40 repeat-containing 99.9 1.4E-24 2.9E-29 174.7 14.7 200 35-275 111-319 (839)
90 KOG0278 Serine/threonine kinas 99.9 1.7E-23 3.7E-28 147.8 16.2 163 55-257 138-301 (334)
91 KOG0305 Anaphase promoting com 99.9 4.9E-23 1.1E-27 162.6 19.8 199 35-279 240-445 (484)
92 KOG0640 mRNA cleavage stimulat 99.9 1.8E-23 3.9E-28 152.0 15.1 182 51-264 163-346 (430)
93 KOG0300 WD40 repeat-containing 99.9 1.8E-23 3.9E-28 152.6 15.2 212 36-275 172-408 (481)
94 KOG0274 Cdc4 and related F-box 99.9 2.8E-23 6.2E-28 169.3 18.2 195 30-274 267-463 (537)
95 KOG1332 Vesicle coat complex C 99.9 2.7E-24 6E-29 151.1 10.4 192 55-276 6-218 (299)
96 KOG0264 Nucleosome remodeling 99.9 3.2E-23 7E-28 157.3 16.9 194 34-253 200-404 (422)
97 KOG0302 Ribosome Assembly prot 99.9 1.7E-23 3.6E-28 155.6 14.7 189 35-253 176-378 (440)
98 KOG1332 Vesicle coat complex C 99.9 4.7E-23 1E-27 144.9 15.9 215 30-278 29-269 (299)
99 KOG0306 WD40-repeat-containing 99.9 6.9E-23 1.5E-27 164.6 18.7 202 35-277 395-604 (888)
100 KOG0293 WD40 repeat-containing 99.9 9.4E-23 2E-27 153.4 17.8 193 52-279 216-409 (519)
101 KOG0268 Sof1-like rRNA process 99.9 1.9E-23 4.1E-28 154.7 13.6 231 27-279 82-329 (433)
102 KOG0973 Histone transcription 99.9 6.2E-23 1.3E-27 170.8 18.2 194 60-279 13-233 (942)
103 KOG0289 mRNA splicing factor [ 99.9 2.6E-22 5.6E-27 151.9 19.6 206 32-279 281-490 (506)
104 KOG0313 Microtubule binding pr 99.9 1.8E-22 3.9E-27 150.2 18.0 202 35-278 126-358 (423)
105 KOG0641 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 136.3 20.8 202 59-279 31-287 (350)
106 KOG0294 WD40 repeat-containing 99.9 2.9E-21 6.3E-26 140.7 21.0 192 52-274 35-258 (362)
107 KOG1273 WD40 repeat protein [G 99.9 7.4E-22 1.6E-26 143.9 17.7 228 35-275 46-303 (405)
108 KOG0302 Ribosome Assembly prot 99.9 3.4E-22 7.3E-27 148.8 16.0 203 55-276 146-358 (440)
109 KOG1539 WD repeat protein [Gen 99.9 9.2E-22 2E-26 159.8 19.6 207 35-279 423-631 (910)
110 KOG0301 Phospholipase A2-activ 99.9 8.1E-22 1.8E-26 157.1 18.2 191 35-278 82-272 (745)
111 KOG0299 U3 snoRNP-associated p 99.9 2.2E-21 4.7E-26 147.8 19.1 205 35-278 225-438 (479)
112 KOG0308 Conserved WD40 repeat- 99.9 1.2E-21 2.7E-26 155.1 17.5 191 32-255 93-287 (735)
113 KOG0270 WD40 repeat-containing 99.9 7.1E-22 1.5E-26 149.8 15.0 165 56-256 239-407 (463)
114 KOG1036 Mitotic spindle checkp 99.9 3.7E-21 7.9E-26 139.7 17.9 206 35-278 76-287 (323)
115 KOG1274 WD40 repeat protein [G 99.9 5E-21 1.1E-25 157.0 20.9 216 57-279 10-246 (933)
116 KOG0307 Vesicle coat complex C 99.9 2.3E-22 5E-27 168.3 12.7 192 54-276 110-307 (1049)
117 KOG0294 WD40 repeat-containing 99.9 1.1E-20 2.4E-25 137.7 19.7 199 30-274 59-306 (362)
118 KOG0267 Microtubule severing p 99.9 5.6E-23 1.2E-27 164.4 8.1 184 55-276 23-207 (825)
119 KOG0268 Sof1-like rRNA process 99.9 3.2E-22 7E-27 148.2 11.2 183 55-278 61-285 (433)
120 KOG4378 Nuclear protein COP1 [ 99.9 4.6E-21 1E-25 147.7 17.6 199 35-276 102-304 (673)
121 KOG0639 Transducin-like enhanc 99.9 5.3E-22 1.1E-26 153.1 12.3 187 56-278 415-605 (705)
122 KOG0639 Transducin-like enhanc 99.9 1.3E-21 2.7E-26 151.0 14.3 206 35-279 441-647 (705)
123 KOG0270 WD40 repeat-containing 99.9 1.4E-21 3.1E-26 148.1 14.2 222 28-276 146-384 (463)
124 KOG2919 Guanine nucleotide-bin 99.9 3.8E-21 8.2E-26 140.7 15.5 218 29-276 128-351 (406)
125 KOG4283 Transcription-coupled 99.9 3.9E-21 8.4E-26 139.0 14.9 174 55-256 96-279 (397)
126 KOG2445 Nuclear pore complex c 99.9 1.1E-19 2.3E-24 132.2 21.7 222 35-277 36-300 (361)
127 KOG0299 U3 snoRNP-associated p 99.9 1.4E-20 3E-25 143.5 16.7 203 53-277 135-339 (479)
128 KOG1273 WD40 repeat protein [G 99.9 2.7E-20 5.9E-25 135.8 17.2 181 63-279 26-210 (405)
129 KOG4328 WD40 protein [Function 99.9 6.3E-21 1.4E-25 145.2 14.2 194 55-277 181-381 (498)
130 KOG2055 WD40 repeat protein [G 99.9 7.4E-20 1.6E-24 139.7 16.9 204 60-278 213-448 (514)
131 KOG2445 Nuclear pore complex c 99.9 5.3E-19 1.2E-23 128.6 20.2 198 55-276 8-234 (361)
132 KOG1274 WD40 repeat protein [G 99.9 2E-19 4.3E-24 147.8 20.2 184 59-277 95-282 (933)
133 KOG0303 Actin-binding protein 99.9 1.3E-19 2.9E-24 135.9 17.4 172 53-255 74-251 (472)
134 KOG2106 Uncharacterized conser 99.8 5.9E-19 1.3E-23 136.4 21.3 207 35-279 268-505 (626)
135 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 2.7E-18 5.8E-23 133.9 25.4 229 35-279 12-262 (300)
136 KOG0300 WD40 repeat-containing 99.8 8.5E-20 1.8E-24 133.6 15.4 185 54-276 266-455 (481)
137 KOG1538 Uncharacterized conser 99.8 3.3E-19 7.1E-24 142.5 20.0 206 35-279 34-277 (1081)
138 KOG1007 WD repeat protein TSSC 99.8 9.3E-20 2E-24 131.5 15.1 200 55-276 58-269 (370)
139 KOG1007 WD repeat protein TSSC 99.8 2.5E-19 5.3E-24 129.4 16.1 188 58-275 121-340 (370)
140 KOG1036 Mitotic spindle checkp 99.8 8.9E-19 1.9E-23 127.4 18.7 179 55-277 8-189 (323)
141 KOG0288 WD40 repeat protein Ti 99.8 1.3E-20 2.8E-25 141.9 8.9 184 55-278 170-354 (459)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.8 9.4E-18 2E-22 130.9 24.6 223 35-275 54-300 (300)
143 KOG0650 WD40 repeat nucleolar 99.8 1E-19 2.2E-24 143.2 13.3 215 40-275 378-660 (733)
144 KOG0646 WD40 repeat protein [G 99.8 1.4E-18 3.1E-23 132.8 18.7 180 60-278 81-290 (476)
145 KOG0771 Prolactin regulatory e 99.8 4.6E-19 1E-23 133.9 15.8 184 64-279 148-338 (398)
146 KOG1009 Chromatin assembly com 99.8 4.2E-19 9E-24 133.6 15.1 163 27-202 29-195 (434)
147 KOG0321 WD40 repeat-containing 99.8 5.8E-19 1.3E-23 139.9 16.0 181 53-255 93-303 (720)
148 KOG2048 WD40 repeat protein [G 99.8 3.6E-18 7.8E-23 136.2 20.3 198 60-277 25-257 (691)
149 KOG0647 mRNA export protein (c 99.8 1.7E-18 3.7E-23 125.7 16.7 171 35-241 51-311 (347)
150 KOG0321 WD40 repeat-containing 99.8 4.1E-19 8.9E-24 140.7 14.4 227 35-276 123-371 (720)
151 KOG4328 WD40 protein [Function 99.8 1E-18 2.2E-23 133.4 15.0 205 35-276 211-431 (498)
152 KOG4378 Nuclear protein COP1 [ 99.8 5.3E-19 1.2E-23 136.5 12.1 181 63-279 82-264 (673)
153 KOG1408 WD40 repeat protein [F 99.8 2.8E-18 6E-23 138.1 15.8 210 35-278 482-696 (1080)
154 KOG0290 Conserved WD40 repeat- 99.8 5.1E-18 1.1E-22 122.7 15.2 196 57-278 93-300 (364)
155 KOG1063 RNA polymerase II elon 99.8 4.9E-18 1.1E-22 135.8 16.2 135 131-275 530-674 (764)
156 KOG0290 Conserved WD40 repeat- 99.8 7.1E-18 1.5E-22 122.0 15.1 188 58-275 148-345 (364)
157 KOG1445 Tumor-specific antigen 99.8 8.5E-19 1.8E-23 139.3 10.3 167 60-254 627-799 (1012)
158 KOG4227 WD40 repeat protein [G 99.8 6.8E-18 1.5E-22 127.1 14.3 199 55-278 51-257 (609)
159 KOG2055 WD40 repeat protein [G 99.8 1.7E-17 3.7E-22 127.0 16.0 206 35-278 281-495 (514)
160 KOG1539 WD repeat protein [Gen 99.8 8.2E-18 1.8E-22 137.2 14.7 175 37-254 473-649 (910)
161 KOG0307 Vesicle coat complex C 99.8 2.2E-18 4.9E-23 144.8 11.0 192 60-277 64-265 (1049)
162 KOG1034 Transcriptional repres 99.8 2.2E-18 4.7E-23 126.6 9.4 214 35-278 116-366 (385)
163 KOG0301 Phospholipase A2-activ 99.8 9.6E-18 2.1E-22 134.2 13.8 182 53-276 7-190 (745)
164 KOG2110 Uncharacterized conser 99.8 1.6E-16 3.5E-21 118.5 19.2 206 61-279 6-232 (391)
165 KOG1034 Transcriptional repres 99.8 3.1E-17 6.7E-22 120.6 14.3 175 55-256 33-214 (385)
166 KOG0303 Actin-binding protein 99.8 8.1E-17 1.8E-21 121.2 16.7 143 114-277 76-228 (472)
167 KOG2048 WD40 repeat protein [G 99.8 2.6E-16 5.7E-21 125.8 20.4 204 35-276 91-302 (691)
168 KOG0644 Uncharacterized conser 99.8 6.9E-19 1.5E-23 143.6 5.6 196 51-278 181-451 (1113)
169 KOG1188 WD40 repeat protein [G 99.8 4.4E-17 9.6E-22 120.3 14.1 175 73-277 41-223 (376)
170 KOG0642 Cell-cycle nuclear pro 99.8 6.8E-17 1.5E-21 126.6 15.5 192 50-265 334-573 (577)
171 KOG2394 WD40 protein DMR-N9 [G 99.7 9.6E-17 2.1E-21 125.2 15.7 163 60-275 219-384 (636)
172 KOG1009 Chromatin assembly com 99.7 5.3E-17 1.1E-21 122.4 12.8 154 114-279 8-179 (434)
173 KOG1310 WD40 repeat protein [G 99.7 1.9E-17 4.1E-22 129.6 10.4 176 51-252 41-230 (758)
174 KOG1523 Actin-related protein 99.7 2.1E-16 4.6E-21 115.9 15.1 187 61-278 11-219 (361)
175 KOG0649 WD40 repeat protein [G 99.7 8.8E-16 1.9E-20 108.7 17.6 202 62-274 12-255 (325)
176 PRK01742 tolB translocation pr 99.7 1.4E-15 2.9E-20 124.0 20.3 195 33-279 183-385 (429)
177 KOG1445 Tumor-specific antigen 99.7 7.8E-17 1.7E-21 128.4 12.5 179 68-279 587-778 (1012)
178 KOG0642 Cell-cycle nuclear pro 99.7 2.2E-16 4.8E-21 123.7 14.5 206 50-279 284-545 (577)
179 KOG1587 Cytoplasmic dynein int 99.7 1.7E-15 3.6E-20 123.5 19.5 200 60-276 242-452 (555)
180 KOG0322 G-protein beta subunit 99.7 4.9E-16 1.1E-20 111.2 13.5 227 34-276 35-304 (323)
181 KOG1524 WD40 repeat-containing 99.7 3.3E-16 7.2E-21 122.4 13.8 170 54-278 98-269 (737)
182 KOG1408 WD40 repeat protein [F 99.7 1.1E-15 2.4E-20 123.4 17.0 192 27-253 519-713 (1080)
183 KOG1524 WD40 repeat-containing 99.7 1.5E-16 3.2E-21 124.4 11.7 129 133-277 111-239 (737)
184 KOG2106 Uncharacterized conser 99.7 3.1E-15 6.6E-20 116.2 18.5 158 55-253 363-521 (626)
185 KOG2096 WD40 repeat protein [G 99.7 1.1E-15 2.3E-20 112.3 15.0 182 35-251 210-400 (420)
186 KOG1063 RNA polymerase II elon 99.7 2.1E-15 4.5E-20 121.1 17.9 214 49-275 180-417 (764)
187 PF08662 eIF2A: Eukaryotic tra 99.7 2.3E-14 5E-19 103.5 20.2 156 64-261 9-186 (194)
188 KOG1188 WD40 repeat protein [G 99.7 2.1E-15 4.4E-20 111.6 14.7 186 35-258 51-247 (376)
189 COG2319 FOG: WD40 repeat [Gene 99.7 9.3E-14 2E-18 113.3 25.0 196 35-274 135-337 (466)
190 KOG1963 WD40 repeat protein [G 99.7 5.9E-15 1.3E-19 121.4 17.5 230 35-278 38-305 (792)
191 PRK11028 6-phosphogluconolacto 99.7 2.8E-14 6.1E-19 112.8 20.4 192 61-279 80-287 (330)
192 KOG2139 WD40 repeat protein [G 99.7 8.1E-15 1.7E-19 109.5 15.9 185 61-279 99-294 (445)
193 PRK04922 tolB translocation pr 99.7 3.4E-14 7.4E-19 116.0 21.2 197 33-279 183-392 (433)
194 PRK11028 6-phosphogluconolacto 99.7 1.6E-13 3.4E-18 108.5 24.2 188 61-279 35-241 (330)
195 PRK05137 tolB translocation pr 99.7 5.5E-14 1.2E-18 114.9 21.5 182 55-279 196-390 (435)
196 PRK03629 tolB translocation pr 99.7 8.2E-14 1.8E-18 113.4 22.1 181 56-279 194-387 (429)
197 KOG0650 WD40 repeat nucleolar 99.7 5.5E-15 1.2E-19 117.0 14.5 133 131-277 571-717 (733)
198 PRK02889 tolB translocation pr 99.7 4.1E-14 9E-19 115.2 20.1 183 56-279 191-384 (427)
199 KOG2110 Uncharacterized conser 99.6 3.1E-13 6.8E-18 101.3 22.6 139 35-203 107-249 (391)
200 KOG0771 Prolactin regulatory e 99.6 5.2E-15 1.1E-19 112.3 13.2 183 35-254 167-355 (398)
201 KOG1272 WD40-repeat-containing 99.6 2.2E-15 4.9E-20 115.7 11.3 199 63-277 132-346 (545)
202 PRK01742 tolB translocation pr 99.6 1.8E-14 3.9E-19 117.4 17.0 191 35-276 229-426 (429)
203 KOG1538 Uncharacterized conser 99.6 5.4E-15 1.2E-19 118.8 13.2 172 62-277 14-188 (1081)
204 KOG0322 G-protein beta subunit 99.6 7.6E-15 1.6E-19 105.1 11.8 167 58-252 148-322 (323)
205 KOG1587 Cytoplasmic dynein int 99.6 5.3E-14 1.1E-18 114.9 18.1 230 31-278 262-499 (555)
206 COG2319 FOG: WD40 repeat [Gene 99.6 1.1E-12 2.4E-17 106.9 24.6 200 35-278 88-297 (466)
207 KOG1517 Guanine nucleotide bin 99.6 1.1E-13 2.5E-18 116.4 18.7 218 35-277 1087-1316(1387)
208 KOG2321 WD40 repeat protein [G 99.6 3.6E-14 7.8E-19 112.0 14.8 211 58-277 49-325 (703)
209 PF08662 eIF2A: Eukaryotic tra 99.6 1.2E-13 2.5E-18 99.8 15.6 91 175-279 61-157 (194)
210 PRK03629 tolB translocation pr 99.6 4.5E-13 9.7E-18 109.1 20.3 172 61-275 243-427 (429)
211 KOG3881 Uncharacterized conser 99.6 1E-13 2.2E-18 104.5 14.7 187 62-275 150-341 (412)
212 KOG1523 Actin-related protein 99.6 2.3E-13 5E-18 100.2 15.9 181 52-256 47-239 (361)
213 KOG1240 Protein kinase contain 99.6 3.4E-13 7.3E-18 115.2 18.2 197 55-276 1043-1249(1431)
214 KOG2139 WD40 repeat protein [G 99.6 5.3E-12 1.1E-16 94.7 21.9 193 60-279 140-359 (445)
215 KOG2111 Uncharacterized conser 99.6 5.9E-12 1.3E-16 92.8 21.5 205 63-279 8-240 (346)
216 KOG4547 WD40 repeat-containing 99.6 4.3E-13 9.3E-18 106.2 16.7 185 70-276 3-195 (541)
217 KOG1354 Serine/threonine prote 99.5 4.9E-14 1.1E-18 104.7 10.1 214 60-279 25-286 (433)
218 KOG1963 WD40 repeat protein [G 99.5 1.5E-12 3.2E-17 107.6 19.6 198 35-262 182-384 (792)
219 TIGR02800 propeller_TolB tol-p 99.5 4E-12 8.8E-17 103.9 21.2 182 55-279 184-378 (417)
220 KOG1517 Guanine nucleotide bin 99.5 6.7E-13 1.4E-17 112.0 16.0 196 33-256 1186-1384(1387)
221 KOG0649 WD40 repeat protein [G 99.5 6E-12 1.3E-16 89.6 18.4 154 61-252 115-273 (325)
222 KOG2394 WD40 protein DMR-N9 [G 99.5 2.1E-13 4.6E-18 106.9 11.5 95 60-183 290-384 (636)
223 PRK00178 tolB translocation pr 99.5 1.1E-11 2.5E-16 101.5 22.2 181 56-279 194-387 (430)
224 PRK01029 tolB translocation pr 99.5 5.5E-12 1.2E-16 102.5 19.3 183 58-279 182-384 (428)
225 PRK04922 tolB translocation pr 99.5 8.6E-12 1.9E-16 102.0 20.0 190 36-275 230-432 (433)
226 KOG3881 Uncharacterized conser 99.5 7.1E-12 1.5E-16 94.8 17.7 191 59-279 104-304 (412)
227 PRK02889 tolB translocation pr 99.5 1.2E-11 2.6E-16 100.8 19.6 192 35-276 221-425 (427)
228 KOG1310 WD40 repeat protein [G 99.5 1.7E-12 3.6E-17 102.4 12.8 208 28-258 66-308 (758)
229 PRK04792 tolB translocation pr 99.5 3E-11 6.5E-16 98.9 20.7 181 56-279 213-406 (448)
230 KOG4497 Uncharacterized conser 99.4 1.5E-11 3.2E-16 91.4 16.2 93 175-278 320-415 (447)
231 PF10282 Lactonase: Lactonase, 99.4 9.7E-11 2.1E-15 92.9 21.7 203 62-279 88-305 (345)
232 KOG2321 WD40 repeat protein [G 99.4 6E-12 1.3E-16 99.8 14.4 187 35-254 156-344 (703)
233 KOG1334 WD40 repeat protein [G 99.4 1.4E-12 3E-17 101.3 10.2 195 52-277 134-348 (559)
234 KOG4497 Uncharacterized conser 99.4 1.2E-12 2.6E-17 97.0 9.4 137 66-243 14-153 (447)
235 KOG4227 WD40 repeat protein [G 99.4 1.8E-11 3.9E-16 93.0 15.6 214 34-277 78-369 (609)
236 PF02239 Cytochrom_D1: Cytochr 99.4 2.5E-10 5.3E-15 90.7 22.8 172 76-279 10-185 (369)
237 KOG0280 Uncharacterized conser 99.4 4.6E-11 1E-15 87.3 16.4 207 35-276 47-264 (339)
238 PRK05137 tolB translocation pr 99.4 1.1E-10 2.4E-15 95.7 20.5 139 117-279 199-347 (435)
239 PF02239 Cytochrom_D1: Cytochr 99.4 1E-09 2.2E-14 87.2 24.5 189 35-262 17-211 (369)
240 PRK01029 tolB translocation pr 99.4 4.2E-10 9.2E-15 91.6 22.0 181 60-277 230-426 (428)
241 KOG2111 Uncharacterized conser 99.4 2.7E-10 5.8E-15 84.3 18.5 175 35-254 76-257 (346)
242 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.6E-09 5.7E-14 83.3 24.5 217 35-278 28-311 (352)
243 KOG1272 WD40-repeat-containing 99.4 3.3E-12 7E-17 98.7 8.2 174 61-275 210-389 (545)
244 PRK00178 tolB translocation pr 99.3 5.4E-10 1.2E-14 91.7 20.2 174 60-276 242-428 (430)
245 COG2706 3-carboxymuconate cycl 99.3 5.6E-09 1.2E-13 78.9 23.4 199 64-279 92-304 (346)
246 KOG0644 Uncharacterized conser 99.3 9.6E-12 2.1E-16 102.7 9.4 207 25-257 245-472 (1113)
247 KOG3914 WD repeat protein WDR4 99.3 5E-11 1.1E-15 90.6 12.2 164 63-262 65-232 (390)
248 PRK04792 tolB translocation pr 99.3 7.8E-10 1.7E-14 90.7 20.3 171 62-275 263-446 (448)
249 COG5170 CDC55 Serine/threonine 99.3 1.6E-11 3.5E-16 90.6 8.4 214 60-279 26-294 (460)
250 TIGR02800 propeller_TolB tol-p 99.3 9.2E-10 2E-14 90.1 19.7 190 35-274 215-417 (417)
251 COG4946 Uncharacterized protei 99.3 1.9E-09 4.1E-14 84.2 19.1 169 68-279 327-502 (668)
252 KOG1240 Protein kinase contain 99.3 9.6E-10 2.1E-14 94.8 19.1 206 35-264 1072-1284(1431)
253 KOG4190 Uncharacterized conser 99.3 1.3E-11 2.8E-16 97.9 7.5 183 55-261 730-914 (1034)
254 KOG0974 WD-repeat protein WDR6 99.3 1.2E-10 2.5E-15 98.4 13.1 149 67-254 140-289 (967)
255 PF10282 Lactonase: Lactonase, 99.3 5.8E-09 1.2E-13 82.9 22.3 193 62-279 38-258 (345)
256 KOG0974 WD-repeat protein WDR6 99.3 4.6E-10 9.9E-15 94.9 16.5 180 61-276 88-269 (967)
257 KOG1334 WD40 repeat protein [G 99.2 1.1E-10 2.4E-15 91.0 11.1 243 27-275 157-446 (559)
258 KOG4532 WD40-like repeat conta 99.2 3.1E-09 6.7E-14 77.1 15.5 181 64-277 71-262 (344)
259 KOG2315 Predicted translation 99.2 1.5E-08 3.3E-13 80.6 19.8 182 59-279 164-368 (566)
260 KOG1409 Uncharacterized conser 99.2 3.2E-10 7E-15 84.8 9.4 175 52-254 189-395 (404)
261 KOG1354 Serine/threonine prote 99.2 1E-09 2.2E-14 82.2 12.0 183 56-255 160-361 (433)
262 COG2706 3-carboxymuconate cycl 99.1 5E-08 1.1E-12 73.9 20.5 186 63-274 147-345 (346)
263 PF15492 Nbas_N: Neuroblastoma 99.1 3.4E-08 7.3E-13 72.6 18.6 186 63-265 46-271 (282)
264 PRK04043 tolB translocation pr 99.1 5.3E-08 1.1E-12 79.0 21.7 173 62-279 189-381 (419)
265 KOG4547 WD40 repeat-containing 99.1 1E-08 2.3E-13 81.9 17.1 180 35-254 16-221 (541)
266 KOG0280 Uncharacterized conser 99.1 1.6E-09 3.5E-14 79.4 11.4 171 55-256 160-336 (339)
267 PF00400 WD40: WD domain, G-be 99.1 3.8E-10 8.1E-15 58.9 6.0 37 52-88 3-39 (39)
268 KOG1064 RAVE (regulator of V-A 99.1 5.1E-10 1.1E-14 99.8 9.1 166 57-261 2205-2374(2439)
269 PF08450 SGL: SMP-30/Gluconola 99.1 2.4E-06 5.1E-11 64.8 27.1 180 63-277 42-237 (246)
270 PLN02919 haloacid dehalogenase 99.0 5.3E-08 1.2E-12 87.5 20.3 182 64-257 686-892 (1057)
271 KOG2315 Predicted translation 99.0 3.2E-08 7E-13 78.8 16.6 134 114-275 265-410 (566)
272 KOG2695 WD40 repeat protein [G 99.0 1.7E-09 3.6E-14 81.1 8.8 128 135-274 261-401 (425)
273 KOG2041 WD40 repeat protein [G 99.0 3.6E-08 7.9E-13 81.1 16.0 206 59-278 13-271 (1189)
274 KOG2314 Translation initiation 99.0 3.2E-08 6.9E-13 78.9 15.1 97 175-279 447-551 (698)
275 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.8E-06 4E-11 67.6 24.5 218 34-262 77-339 (352)
276 KOG4532 WD40-like repeat conta 99.0 2E-07 4.4E-12 67.9 17.4 167 63-254 161-332 (344)
277 KOG0309 Conserved WD40 repeat- 99.0 5E-09 1.1E-13 86.2 10.1 199 60-277 24-257 (1081)
278 PF07433 DUF1513: Protein of u 99.0 2.5E-07 5.5E-12 70.0 18.3 193 36-263 30-257 (305)
279 PF04762 IKI3: IKI3 family; I 98.9 2.9E-07 6.3E-12 81.4 20.6 196 60-276 120-359 (928)
280 PLN02919 haloacid dehalogenase 98.9 4.3E-07 9.4E-12 81.8 21.9 205 63-278 626-871 (1057)
281 KOG4714 Nucleoporin [Nuclear s 98.9 7.2E-09 1.6E-13 74.9 7.9 73 175-254 181-255 (319)
282 PRK04043 tolB translocation pr 98.9 1.2E-06 2.6E-11 71.2 20.3 187 35-273 214-419 (419)
283 PF06977 SdiA-regulated: SdiA- 98.9 8E-06 1.7E-10 61.0 22.4 199 55-278 16-234 (248)
284 COG4946 Uncharacterized protei 98.8 4.4E-07 9.5E-12 71.4 15.9 147 55-241 354-506 (668)
285 KOG2066 Vacuolar assembly/sort 98.8 7.1E-08 1.5E-12 80.2 12.0 154 60-264 39-198 (846)
286 PF00400 WD40: WD domain, G-be 98.8 1.8E-08 4E-13 52.4 5.9 32 219-251 8-39 (39)
287 KOG1912 WD40 repeat protein [G 98.8 7.3E-07 1.6E-11 74.3 17.3 210 36-278 37-285 (1062)
288 KOG1409 Uncharacterized conser 98.8 2E-07 4.4E-12 70.2 12.9 201 55-270 19-245 (404)
289 COG5170 CDC55 Serine/threonine 98.8 5E-08 1.1E-12 72.6 9.3 197 61-264 86-321 (460)
290 KOG3914 WD repeat protein WDR4 98.8 2.8E-08 6E-13 76.0 8.3 89 55-167 146-234 (390)
291 KOG2695 WD40 repeat protein [G 98.8 8.5E-08 1.8E-12 72.2 10.0 148 59-232 251-402 (425)
292 KOG4190 Uncharacterized conser 98.8 6.3E-08 1.4E-12 77.5 9.6 193 33-257 756-952 (1034)
293 KOG1832 HIV-1 Vpr-binding prot 98.8 8.8E-09 1.9E-13 86.6 4.8 182 51-277 1092-1278(1516)
294 KOG2041 WD40 repeat protein [G 98.7 7.4E-07 1.6E-11 73.7 15.1 184 54-277 65-320 (1189)
295 KOG1275 PAB-dependent poly(A) 98.7 9.1E-07 2E-11 74.9 14.5 151 63-252 180-341 (1118)
296 KOG1064 RAVE (regulator of V-A 98.7 7.3E-08 1.6E-12 86.7 8.4 151 61-262 2252-2407(2439)
297 KOG1645 RING-finger-containing 98.7 9.8E-07 2.1E-11 68.0 12.5 82 114-208 188-272 (463)
298 KOG0309 Conserved WD40 repeat- 98.7 1.1E-07 2.4E-12 78.6 7.9 184 55-273 109-307 (1081)
299 KOG4714 Nucleoporin [Nuclear s 98.6 4.7E-07 1E-11 65.8 9.8 75 61-157 180-255 (319)
300 KOG2314 Translation initiation 98.6 5.2E-06 1.1E-10 66.7 16.3 161 64-262 214-390 (698)
301 KOG1645 RING-finger-containing 98.6 4.2E-06 9.1E-11 64.6 15.2 80 55-158 188-268 (463)
302 COG5354 Uncharacterized protei 98.6 4.8E-06 1E-10 66.2 14.2 184 59-279 31-236 (561)
303 PF11768 DUF3312: Protein of u 98.5 2.8E-06 6E-11 68.9 12.8 76 57-158 256-331 (545)
304 KOG1920 IkappaB kinase complex 98.5 3.4E-05 7.3E-10 67.8 18.8 113 132-256 201-325 (1265)
305 KOG1008 Uncharacterized conser 98.5 3.8E-08 8.3E-13 79.9 1.1 172 54-253 96-275 (783)
306 PF11768 DUF3312: Protein of u 98.5 4E-05 8.8E-10 62.4 17.9 69 175-254 261-330 (545)
307 PF04762 IKI3: IKI3 family; I 98.5 4.4E-05 9.5E-10 68.1 19.6 183 59-278 74-317 (928)
308 PF08553 VID27: VID27 cytoplas 98.4 1.7E-05 3.7E-10 68.3 15.8 132 137-279 492-632 (794)
309 PF15492 Nbas_N: Neuroblastoma 98.4 0.00028 6E-09 52.5 20.5 153 66-242 3-166 (282)
310 PF08450 SGL: SMP-30/Gluconola 98.4 0.00037 8E-09 52.8 23.0 174 65-278 4-196 (246)
311 PF07433 DUF1513: Protein of u 98.4 6.6E-05 1.4E-09 57.2 16.3 135 133-278 11-175 (305)
312 COG5354 Uncharacterized protei 98.4 5.4E-05 1.2E-09 60.4 16.3 175 61-279 174-373 (561)
313 PRK02888 nitrous-oxide reducta 98.4 4.4E-05 9.6E-10 63.6 15.9 110 135-254 285-405 (635)
314 COG0823 TolB Periplasmic compo 98.4 3.2E-05 7E-10 62.8 15.0 179 60-278 192-382 (425)
315 KOG1912 WD40 repeat protein [G 98.4 1.4E-05 3E-10 67.0 12.8 123 140-274 439-572 (1062)
316 KOG1008 Uncharacterized conser 98.3 1.6E-07 3.5E-12 76.4 1.6 184 60-276 56-254 (783)
317 TIGR03300 assembly_YfgL outer 98.3 0.00018 3.9E-09 58.3 19.1 110 138-266 241-351 (377)
318 KOG2066 Vacuolar assembly/sort 98.3 0.00011 2.4E-09 62.0 16.5 166 55-253 53-233 (846)
319 PF13360 PQQ_2: PQQ-like domai 98.2 0.00013 2.8E-09 55.0 15.4 118 137-265 35-152 (238)
320 COG3490 Uncharacterized protei 98.2 2E-05 4.3E-10 58.5 10.1 170 67-260 120-317 (366)
321 KOG1275 PAB-dependent poly(A) 98.2 4.8E-05 1E-09 65.0 13.4 126 137-278 186-325 (1118)
322 KOG0882 Cyclophilin-related pe 98.2 1.2E-05 2.5E-10 63.2 9.2 182 55-262 48-240 (558)
323 KOG2114 Vacuolar assembly/sort 98.2 0.00019 4.2E-09 61.1 16.7 182 62-276 27-225 (933)
324 KOG0882 Cyclophilin-related pe 98.2 4.8E-05 1E-09 59.9 12.2 188 58-278 7-214 (558)
325 PF13360 PQQ_2: PQQ-like domai 98.2 0.0013 2.7E-08 49.6 20.6 156 71-259 75-236 (238)
326 COG0823 TolB Periplasmic compo 98.2 0.0002 4.3E-09 58.3 15.8 193 35-275 219-423 (425)
327 KOG2395 Protein involved in va 98.2 0.00013 2.8E-09 58.9 14.1 130 140-279 348-485 (644)
328 COG3391 Uncharacterized conser 98.2 0.0012 2.5E-08 53.5 20.1 180 64-279 77-266 (381)
329 PF04053 Coatomer_WDAD: Coatom 98.1 0.00041 8.8E-09 56.8 16.4 165 60-276 32-207 (443)
330 smart00320 WD40 WD40 repeats. 98.1 9.3E-06 2E-10 41.4 4.7 34 55-88 7-40 (40)
331 KOG3621 WD40 repeat-containing 98.1 5.3E-05 1.1E-09 62.9 10.8 114 134-254 41-155 (726)
332 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00073 1.6E-08 43.2 13.5 91 139-248 16-109 (111)
333 PF08596 Lgl_C: Lethal giant l 98.1 0.001 2.2E-08 53.8 17.7 207 49-277 75-318 (395)
334 KOG3617 WD40 and TPR repeat-co 98.1 0.00085 1.9E-08 57.5 17.6 212 55-275 96-365 (1416)
335 PF00930 DPPIV_N: Dipeptidyl p 98.0 0.0012 2.5E-08 53.1 16.9 51 35-93 24-74 (353)
336 PF14783 BBS2_Mid: Ciliary BBS 98.0 0.001 2.2E-08 42.6 12.6 99 63-197 2-109 (111)
337 TIGR03300 assembly_YfgL outer 98.0 0.00088 1.9E-08 54.3 15.7 151 71-260 64-215 (377)
338 KOG3617 WD40 and TPR repeat-co 98.0 2.4E-05 5.3E-10 66.4 6.6 104 134-253 23-131 (1416)
339 COG3386 Gluconolactonase [Carb 97.9 0.0055 1.2E-07 47.7 18.7 96 175-274 164-263 (307)
340 KOG4640 Anaphase-promoting com 97.9 8.3E-05 1.8E-09 61.1 8.7 93 61-183 21-115 (665)
341 KOG4640 Anaphase-promoting com 97.9 0.00012 2.5E-09 60.2 9.0 91 175-275 22-115 (665)
342 PF08596 Lgl_C: Lethal giant l 97.9 0.0064 1.4E-07 49.2 18.8 188 62-260 3-250 (395)
343 KOG2395 Protein involved in va 97.8 0.0016 3.4E-08 52.9 14.0 137 36-203 358-501 (644)
344 KOG3621 WD40 repeat-containing 97.8 0.00038 8.2E-09 58.1 10.6 122 59-203 32-155 (726)
345 PF03178 CPSF_A: CPSF A subuni 97.8 0.012 2.6E-07 46.6 19.4 149 72-253 42-202 (321)
346 PF08553 VID27: VID27 cytoplas 97.8 0.0022 4.8E-08 55.8 15.2 101 140-252 544-646 (794)
347 KOG2114 Vacuolar assembly/sort 97.7 0.0014 2.9E-08 56.2 13.5 137 135-278 32-184 (933)
348 smart00320 WD40 WD40 repeats. 97.7 0.00013 2.8E-09 36.8 4.8 32 219-251 9-40 (40)
349 PF15390 DUF4613: Domain of un 97.7 0.0028 6.1E-08 52.3 14.0 128 115-253 52-186 (671)
350 PF06433 Me-amine-dh_H: Methyl 97.7 0.015 3.3E-07 45.4 20.1 186 35-256 18-216 (342)
351 COG3204 Uncharacterized protei 97.6 0.015 3.3E-07 44.0 18.0 183 56-262 81-271 (316)
352 KOG1832 HIV-1 Vpr-binding prot 97.6 3.5E-05 7.5E-10 65.8 1.9 130 131-277 1106-1242(1516)
353 PF04053 Coatomer_WDAD: Coatom 97.6 0.002 4.3E-08 52.9 11.7 127 125-279 31-158 (443)
354 PF12894 Apc4_WD40: Anaphase-p 97.5 0.00039 8.4E-09 37.2 5.1 34 222-257 11-44 (47)
355 PRK11138 outer membrane biogen 97.5 0.04 8.6E-07 45.1 20.6 107 138-263 256-363 (394)
356 PRK13616 lipoprotein LpqB; Pro 97.5 0.028 6.2E-07 48.1 18.0 74 175-252 449-524 (591)
357 KOG1920 IkappaB kinase complex 97.5 0.0073 1.6E-07 54.0 14.5 114 63-203 198-323 (1265)
358 PRK02888 nitrous-oxide reducta 97.5 0.053 1.2E-06 46.0 18.8 133 133-278 199-387 (635)
359 KOG4649 PQQ (pyrrolo-quinoline 97.4 0.012 2.6E-07 43.7 13.0 109 138-262 23-132 (354)
360 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00078 1.7E-08 36.0 5.3 31 60-90 11-41 (47)
361 COG3391 Uncharacterized conser 97.4 0.056 1.2E-06 43.9 21.3 181 62-276 117-309 (381)
362 PRK11138 outer membrane biogen 97.4 0.018 3.8E-07 47.1 15.1 137 72-252 256-393 (394)
363 TIGR02604 Piru_Ver_Nterm putat 97.4 0.018 4E-07 46.5 14.9 142 129-278 16-196 (367)
364 PF00780 CNH: CNH domain; Int 97.3 0.043 9.4E-07 42.3 17.3 154 70-259 5-171 (275)
365 KOG4499 Ca2+-binding protein R 97.2 0.038 8.3E-07 40.5 13.4 97 177-274 161-262 (310)
366 KOG4649 PQQ (pyrrolo-quinoline 97.2 0.054 1.2E-06 40.4 15.7 102 72-202 63-165 (354)
367 KOG2079 Vacuolar assembly/sort 97.2 0.0024 5.2E-08 56.2 8.2 103 138-252 99-202 (1206)
368 cd00216 PQQ_DH Dehydrogenases 97.1 0.081 1.8E-06 44.6 17.0 111 140-263 303-434 (488)
369 PF10647 Gmad1: Lipoprotein Lp 97.1 0.073 1.6E-06 40.6 17.6 154 62-246 25-188 (253)
370 PF02897 Peptidase_S9_N: Proly 97.1 0.095 2.1E-06 43.2 17.1 112 133-255 130-262 (414)
371 PF10313 DUF2415: Uncharacteri 97.1 0.0024 5.2E-08 33.1 4.8 32 223-254 1-34 (43)
372 PF04841 Vps16_N: Vps16, N-ter 97.0 0.14 3E-06 42.1 18.4 30 120-157 81-110 (410)
373 COG3490 Uncharacterized protei 97.0 0.06 1.3E-06 40.8 12.9 128 140-278 82-238 (366)
374 KOG2079 Vacuolar assembly/sort 97.0 0.0027 5.8E-08 55.9 6.8 83 184-274 98-181 (1206)
375 PF00930 DPPIV_N: Dipeptidyl p 97.0 0.0082 1.8E-07 48.2 9.4 63 135-203 1-72 (353)
376 PF13449 Phytase-like: Esteras 97.0 0.13 2.8E-06 40.9 15.7 168 60-240 19-231 (326)
377 PF06977 SdiA-regulated: SdiA- 96.9 0.11 2.4E-06 39.3 15.9 122 121-254 23-148 (248)
378 PF08728 CRT10: CRT10; InterP 96.9 0.21 4.6E-06 43.4 17.3 105 137-252 113-245 (717)
379 PF02897 Peptidase_S9_N: Proly 96.9 0.18 3.9E-06 41.6 19.6 114 62-203 125-261 (414)
380 KOG3630 Nuclear pore complex, 96.9 0.014 3E-07 52.1 10.2 155 62-240 102-260 (1405)
381 PRK13616 lipoprotein LpqB; Pro 96.8 0.073 1.6E-06 45.7 14.1 138 131-278 354-509 (591)
382 KOG4499 Ca2+-binding protein R 96.8 0.026 5.7E-07 41.3 9.4 106 64-189 161-270 (310)
383 PF14870 PSII_BNR: Photosynthe 96.7 0.19 4.1E-06 39.2 19.5 159 58-250 142-301 (302)
384 PF00780 CNH: CNH domain; Int 96.7 0.2 4.3E-06 38.7 15.2 132 136-276 5-149 (275)
385 KOG2444 WD40 repeat protein [G 96.6 0.015 3.3E-07 42.3 7.3 106 72-203 70-178 (238)
386 PF12234 Rav1p_C: RAVE protein 96.5 0.18 3.9E-06 43.3 14.3 116 64-203 33-157 (631)
387 PF06433 Me-amine-dh_H: Methyl 96.5 0.29 6.3E-06 38.5 17.9 165 73-264 148-331 (342)
388 PF12234 Rav1p_C: RAVE protein 96.5 0.1 2.2E-06 44.7 12.7 107 137-252 40-155 (631)
389 KOG1916 Nuclear protein, conta 96.5 0.0048 1E-07 53.5 4.8 181 55-258 127-328 (1283)
390 PF14583 Pectate_lyase22: Olig 96.5 0.34 7.5E-06 38.8 16.5 174 67-278 42-250 (386)
391 PF10647 Gmad1: Lipoprotein Lp 96.4 0.27 5.9E-06 37.5 14.7 133 132-278 29-178 (253)
392 COG3386 Gluconolactonase [Carb 96.4 0.33 7.1E-06 38.1 18.0 150 66-253 30-193 (307)
393 PF04841 Vps16_N: Vps16, N-ter 96.4 0.42 9.2E-06 39.3 20.7 54 222-276 216-270 (410)
394 PF03178 CPSF_A: CPSF A subuni 96.4 0.36 7.7E-06 38.3 17.9 146 114-277 18-184 (321)
395 PF05096 Glu_cyclase_2: Glutam 96.4 0.29 6.4E-06 37.1 19.6 181 61-278 45-243 (264)
396 COG5167 VID27 Protein involved 96.4 0.42 9.1E-06 39.6 14.6 127 141-279 483-617 (776)
397 PF10313 DUF2415: Uncharacteri 96.3 0.021 4.6E-07 29.6 4.9 31 61-91 1-34 (43)
398 KOG2247 WD40 repeat-containing 96.3 0.00045 9.8E-09 55.5 -2.0 128 135-278 43-172 (615)
399 PHA02713 hypothetical protein; 96.3 0.38 8.3E-06 41.4 15.1 104 149-265 433-545 (557)
400 KOG3630 Nuclear pore complex, 96.2 0.12 2.5E-06 46.6 11.9 130 135-274 109-252 (1405)
401 cd00216 PQQ_DH Dehydrogenases 96.2 0.66 1.4E-05 39.3 20.0 168 73-262 111-328 (488)
402 PF10168 Nup88: Nuclear pore c 96.2 0.84 1.8E-05 40.4 20.5 91 60-158 84-181 (717)
403 PF14761 HPS3_N: Hermansky-Pud 96.0 0.32 6.9E-06 35.5 11.1 105 140-254 30-164 (215)
404 PF05694 SBP56: 56kDa selenium 95.9 0.62 1.3E-05 38.0 13.4 67 175-242 313-393 (461)
405 KOG2444 WD40 repeat protein [G 95.7 0.062 1.3E-06 39.2 6.6 103 138-254 70-178 (238)
406 PF15390 DUF4613: Domain of un 95.7 0.94 2E-05 38.3 14.0 126 58-203 54-187 (671)
407 PF07995 GSDH: Glucose / Sorbo 95.6 0.55 1.2E-05 37.5 12.6 102 175-278 3-126 (331)
408 PF05694 SBP56: 56kDa selenium 95.6 0.85 1.8E-05 37.2 13.1 130 146-278 220-386 (461)
409 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 1.4 3E-05 37.7 19.3 31 234-264 471-501 (527)
410 PF07569 Hira: TUP1-like enhan 95.5 0.19 4.2E-06 37.3 9.0 68 136-203 20-96 (219)
411 PF14655 RAB3GAP2_N: Rab3 GTPa 95.4 0.41 8.9E-06 39.1 11.2 106 55-168 302-410 (415)
412 COG3204 Uncharacterized protei 95.4 0.89 1.9E-05 34.9 12.8 121 121-253 87-210 (316)
413 KOG1897 Damage-specific DNA bi 95.3 2.1 4.6E-05 38.6 16.2 180 34-252 750-941 (1096)
414 PF14870 PSII_BNR: Photosynthe 95.1 1.2 2.6E-05 34.9 19.4 111 135-256 153-263 (302)
415 PF10168 Nup88: Nuclear pore c 95.1 2.2 4.9E-05 37.8 15.8 80 175-255 86-181 (717)
416 PLN00033 photosystem II stabil 95.1 1.5 3.3E-05 35.9 17.3 114 120-250 281-396 (398)
417 TIGR02276 beta_rpt_yvtn 40-res 95.0 0.2 4.3E-06 25.7 5.9 40 234-274 3-42 (42)
418 PF14655 RAB3GAP2_N: Rab3 GTPa 95.0 0.49 1.1E-05 38.7 10.4 87 174-264 308-409 (415)
419 PF05096 Glu_cyclase_2: Glutam 95.0 1.2 2.6E-05 33.9 17.4 104 137-242 138-250 (264)
420 PRK13684 Ycf48-like protein; P 94.9 1.6 3.5E-05 34.9 17.2 158 60-251 172-329 (334)
421 PF07995 GSDH: Glucose / Sorbo 94.8 0.97 2.1E-05 36.1 11.7 113 129-245 4-135 (331)
422 TIGR02604 Piru_Ver_Nterm putat 94.7 2 4.3E-05 34.9 15.5 58 175-242 125-202 (367)
423 PF14583 Pectate_lyase22: Olig 94.6 1.9 4.2E-05 34.8 16.4 132 131-276 40-198 (386)
424 TIGR03606 non_repeat_PQQ dehyd 94.6 2.1 4.4E-05 35.7 13.2 58 128-185 31-90 (454)
425 KOG4441 Proteins containing BT 94.6 2.8 6.1E-05 36.3 15.4 106 137-256 427-549 (571)
426 KOG1916 Nuclear protein, conta 94.6 0.068 1.5E-06 46.9 4.8 109 148-266 153-283 (1283)
427 KOG4460 Nuclear pore complex, 94.5 0.95 2.1E-05 37.7 10.8 29 125-153 102-130 (741)
428 PF07569 Hira: TUP1-like enhan 94.5 0.34 7.3E-06 36.0 7.8 72 181-255 18-97 (219)
429 COG5167 VID27 Protein involved 94.4 0.67 1.5E-05 38.4 9.8 62 137-203 572-633 (776)
430 PF12657 TFIIIC_delta: Transcr 94.4 1.2 2.6E-05 31.7 10.3 36 121-157 87-122 (173)
431 KOG1900 Nuclear pore complex, 94.4 1.9 4.2E-05 40.0 13.3 79 175-254 180-273 (1311)
432 TIGR03606 non_repeat_PQQ dehyd 94.2 2.8 6.1E-05 34.9 18.3 32 61-92 30-61 (454)
433 TIGR02276 beta_rpt_yvtn 40-res 94.0 0.4 8.7E-06 24.6 5.9 33 136-168 1-34 (42)
434 KOG2377 Uncharacterized conser 94.0 3 6.4E-05 34.4 14.4 124 113-253 60-185 (657)
435 PF14781 BBS2_N: Ciliary BBSom 93.9 1.3 2.8E-05 29.8 12.6 111 135-261 7-133 (136)
436 PF12657 TFIIIC_delta: Transcr 93.7 0.8 1.7E-05 32.6 8.4 30 224-253 87-121 (173)
437 PF03022 MRJP: Major royal jel 93.7 2.6 5.7E-05 32.9 16.8 54 224-278 187-248 (287)
438 PF07676 PD40: WD40-like Beta 93.7 0.39 8.4E-06 24.3 5.1 29 59-87 7-38 (39)
439 PF11715 Nup160: Nucleoporin N 93.3 0.96 2.1E-05 39.0 9.6 40 224-263 216-258 (547)
440 PRK13684 Ycf48-like protein; P 93.2 3.7 7.9E-05 32.9 13.4 96 175-277 216-314 (334)
441 PHA03098 kelch-like protein; P 93.2 5.1 0.00011 34.5 16.3 106 137-256 389-514 (534)
442 KOG2377 Uncharacterized conser 93.1 1.6 3.4E-05 35.8 9.6 95 175-276 68-164 (657)
443 PF12768 Rax2: Cortical protei 92.7 3.9 8.4E-05 31.8 12.3 117 149-275 17-146 (281)
444 PHA02713 hypothetical protein; 91.9 7.8 0.00017 33.6 17.5 25 137-161 351-380 (557)
445 COG4257 Vgb Streptogramin lyas 91.8 4.7 0.0001 30.9 12.3 99 133-242 68-166 (353)
446 PLN00033 photosystem II stabil 91.5 6.9 0.00015 32.2 14.7 96 175-277 282-382 (398)
447 PRK10115 protease 2; Provision 91.4 5.9 0.00013 35.3 12.2 71 175-255 128-209 (686)
448 PF07250 Glyoxal_oxid_N: Glyox 91.3 5.2 0.00011 30.3 13.4 127 133-263 73-207 (243)
449 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.1 9.2 0.0002 32.9 21.6 164 73-259 121-339 (527)
450 KOG4441 Proteins containing BT 91.1 9.6 0.00021 33.1 15.4 106 137-256 380-502 (571)
451 PF14781 BBS2_N: Ciliary BBSom 90.9 3.5 7.6E-05 27.8 12.9 120 65-203 3-126 (136)
452 COG4590 ABC-type uncharacteriz 90.9 2.7 5.9E-05 34.5 8.6 169 55-257 215-390 (733)
453 COG5290 IkappaB kinase complex 90.5 6.5 0.00014 34.9 11.0 92 178-277 251-348 (1243)
454 TIGR03074 PQQ_membr_DH membran 90.4 13 0.00029 33.5 13.5 123 138-262 194-353 (764)
455 PHA02790 Kelch-like protein; P 90.4 10 0.00022 32.2 16.9 104 137-256 362-473 (480)
456 PF13449 Phytase-like: Esteras 90.4 7.9 0.00017 30.9 14.9 101 175-278 86-227 (326)
457 KOG2247 WD40 repeat-containing 90.4 0.05 1.1E-06 44.3 -1.1 136 64-239 38-175 (615)
458 KOG4460 Nuclear pore complex, 90.2 5.4 0.00012 33.6 9.8 92 62-161 105-203 (741)
459 PF11715 Nup160: Nucleoporin N 90.0 4.5 9.7E-05 35.0 10.1 31 137-167 229-259 (547)
460 PF03088 Str_synth: Strictosid 89.9 1.2 2.6E-05 27.7 4.8 43 143-191 32-74 (89)
461 KOG2280 Vacuolar assembly/sort 89.7 14 0.0003 32.7 14.8 39 223-262 217-255 (829)
462 PRK10115 protease 2; Provision 89.6 15 0.00032 32.9 20.6 111 62-203 128-256 (686)
463 PF14727 PHTB1_N: PTHB1 N-term 89.1 12 0.00026 31.1 14.4 111 137-256 36-166 (418)
464 PF14727 PHTB1_N: PTHB1 N-term 88.4 13 0.00029 30.8 16.3 153 71-252 36-203 (418)
465 smart00564 PQQ beta-propeller 88.3 1.5 3.3E-05 20.9 3.8 25 140-164 8-32 (33)
466 PF10214 Rrn6: RNA polymerase 87.9 21 0.00045 32.5 19.0 131 61-204 146-278 (765)
467 PF05935 Arylsulfotrans: Aryls 86.8 19 0.0004 30.7 15.1 124 134-265 155-313 (477)
468 PF01011 PQQ: PQQ enzyme repea 86.4 2.8 6.2E-05 21.0 4.6 29 140-168 2-30 (38)
469 PF03088 Str_synth: Strictosid 86.4 5.9 0.00013 24.6 6.5 37 242-279 34-70 (89)
470 PHA03098 kelch-like protein; P 86.4 21 0.00045 30.8 14.1 106 137-256 342-467 (534)
471 PF08728 CRT10: CRT10; InterP 85.7 6.7 0.00015 34.7 8.4 79 61-155 164-245 (717)
472 TIGR02171 Fb_sc_TIGR02171 Fibr 85.3 15 0.00032 33.5 10.3 73 147-232 328-408 (912)
473 PF03022 MRJP: Major royal jel 85.1 16 0.00036 28.5 18.1 158 35-203 35-216 (287)
474 PF11635 Med16: Mediator compl 82.7 38 0.00082 30.8 15.9 73 175-248 261-345 (753)
475 PF01011 PQQ: PQQ enzyme repea 82.3 4.7 0.0001 20.2 4.4 27 237-263 2-28 (38)
476 PF01731 Arylesterase: Arylest 82.3 9.4 0.0002 23.6 6.0 29 175-203 55-85 (86)
477 TIGR03032 conserved hypothetic 81.8 24 0.00052 27.9 10.2 103 37-184 188-315 (335)
478 COG3823 Glutamine cyclotransfe 81.7 19 0.0004 26.6 12.3 23 220-242 226-248 (262)
479 TIGR03074 PQQ_membr_DH membran 80.9 44 0.00096 30.4 17.4 26 237-262 461-486 (764)
480 PF14269 Arylsulfotran_2: Aryl 80.7 26 0.00056 27.7 14.7 73 130-202 147-220 (299)
481 KOG1520 Predicted alkaloid syn 80.6 29 0.00063 28.1 11.0 40 192-241 197-236 (376)
482 PF01436 NHL: NHL repeat; Int 80.4 4.5 9.7E-05 18.7 4.5 25 225-250 4-28 (28)
483 PF14779 BBS1: Ciliary BBSome 79.9 25 0.00054 26.9 8.7 78 120-199 177-255 (257)
484 COG4590 ABC-type uncharacteriz 79.8 20 0.00043 29.8 8.4 62 137-204 327-388 (733)
485 PF08954 DUF1900: Domain of un 78.7 15 0.00032 25.1 6.4 53 175-232 12-66 (136)
486 COG3823 Glutamine cyclotransfe 78.5 25 0.00053 26.0 8.7 102 137-255 55-160 (262)
487 PF02333 Phytase: Phytase; In 78.5 36 0.00077 27.9 18.8 129 121-261 157-299 (381)
488 KOG2280 Vacuolar assembly/sort 78.1 16 0.00034 32.4 7.7 51 147-203 63-113 (829)
489 PF12341 DUF3639: Protein of u 77.8 5.6 0.00012 18.4 3.5 25 224-251 3-27 (27)
490 TIGR03118 PEPCTERM_chp_1 conse 77.2 34 0.00073 27.0 21.8 204 63-276 25-308 (336)
491 TIGR03118 PEPCTERM_chp_1 conse 76.2 36 0.00079 26.8 12.7 119 132-253 28-170 (336)
492 PF07250 Glyoxal_oxid_N: Glyox 75.9 33 0.00071 26.1 10.2 147 32-204 45-199 (243)
493 PF10395 Utp8: Utp8 family; I 75.7 58 0.0013 28.9 14.6 174 60-262 129-314 (670)
494 KOG1983 Tomosyn and related SN 75.4 64 0.0014 30.5 11.4 31 61-91 36-66 (993)
495 KOG3616 Selective LIM binding 73.6 9.9 0.00022 33.7 5.5 33 60-92 14-46 (1636)
496 PF12768 Rax2: Cortical protei 73.4 39 0.00085 26.4 8.3 71 194-274 16-97 (281)
497 PF01731 Arylesterase: Arylest 71.7 11 0.00025 23.2 4.2 29 62-90 55-84 (86)
498 PF13570 PQQ_3: PQQ-like domai 71.7 8.6 0.00019 19.4 3.2 20 235-254 21-40 (40)
499 PF10584 Proteasome_A_N: Prote 71.4 1.9 4E-05 19.0 0.5 7 272-278 7-13 (23)
500 KOG1896 mRNA cleavage and poly 70.1 1E+02 0.0023 29.4 15.5 175 74-273 1048-1241(1366)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.7e-39 Score=239.29 Aligned_cols=214 Identities=20% Similarity=0.314 Sum_probs=179.6
Q ss_pred eeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672 32 YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 32 ~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
....+++||+.+..+.+ +.++|...|.|++|+|||+.||+|+.||+|++||..+++....
T Consensus 135 GD~TvR~WD~~TeTp~~------t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~-------------- 194 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLF------TCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR-------------- 194 (480)
T ss_pred CCceEEeeccCCCCcce------eecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--------------
Confidence 33467889998888876 8999999999999999999999999999999999987754321
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcc---------------------
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV--------------------- 170 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~--------------------- 170 (279)
...+|...|++++|.|- ...|.++.||+++.||.|+|||+..++++..+.+|...
T Consensus 195 --~l~gH~K~It~Lawep~--hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtI 270 (480)
T KOG0271|consen 195 --ALRGHKKWITALAWEPL--HLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTI 270 (480)
T ss_pred --cccCcccceeEEeeccc--ccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceE
Confidence 33567778999999886 34677778888888888888888776666554444322
Q ss_pred --------------------------------------------------------------------------------
Q 023672 171 -------------------------------------------------------------------------------- 170 (279)
Q Consensus 171 -------------------------------------------------------------------------------- 170 (279)
T Consensus 271 kvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlfl 350 (480)
T KOG0271|consen 271 KVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFL 350 (480)
T ss_pred EEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEE
Confidence
Q ss_pred --------------ccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC
Q 023672 171 --------------DEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT 235 (279)
Q Consensus 171 --------------~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 235 (279)
++..-|..+.|+||+++++++ .|..|++||.+++ +.+..+ .+|-.+|+.++|+. +.
T Consensus 351 W~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG----k~lasf----RGHv~~VYqvawsa-Ds 421 (480)
T KOG0271|consen 351 WNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG----KFLASF----RGHVAAVYQVAWSA-DS 421 (480)
T ss_pred ecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc----chhhhh----hhccceeEEEEecc-Cc
Confidence 455568899999999999965 9999999999995 333444 79999999999999 99
Q ss_pred cEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 236 GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 236 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
++|++|+.|.++++||+++.++...+++|.+.|.++.|+|||+
T Consensus 422 RLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~ 464 (480)
T KOG0271|consen 422 RLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQ 464 (480)
T ss_pred cEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCc
Confidence 9999999999999999999999999999999999999999996
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.3e-38 Score=238.08 Aligned_cols=202 Identities=20% Similarity=0.311 Sum_probs=179.2
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+.+|++....++. .+.+|...|..++|+|+|++|+|++.|.+-++||++++... ..
T Consensus 242 tvklw~~~~e~~l~------~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~El-----------------L~ 298 (459)
T KOG0272|consen 242 TVKLWKLSQETPLQ------DLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSEL-----------------LL 298 (459)
T ss_pred ceeeeccCCCcchh------hhhcchhhheeeeecCCCceeeecccccchhhcccccchhh-----------------Hh
Confidence 45566666554444 78999999999999999999999999999999999976431 14
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (279)
..+|...|.+++| .+||.++++|+.|..-+|||+++|+++..+..|.. +|.+++|+|+|..+++| .|
T Consensus 299 QEGHs~~v~~iaf-------~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k-----~I~~V~fsPNGy~lATgs~D 366 (459)
T KOG0272|consen 299 QEGHSKGVFSIAF-------QPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIK-----EILSVAFSPNGYHLATGSSD 366 (459)
T ss_pred hcccccccceeEe-------cCCCceeeccCccchhheeecccCcEEEEeccccc-----ceeeEeECCCceEEeecCCC
Confidence 5678889999987 77899999999999999999999999999999887 99999999999999977 99
Q ss_pred CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK 273 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 273 (279)
++++|||++.. ....++ .+|.+-|+.++|+|..|.+|+|++.|++++||..+++.++.++.+|++.|.++..
T Consensus 367 nt~kVWDLR~r----~~ly~i----pAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Di 438 (459)
T KOG0272|consen 367 NTCKVWDLRMR----SELYTI----PAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDI 438 (459)
T ss_pred CcEEEeeeccc----ccceec----ccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEe
Confidence 99999999974 223444 7999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 023672 274 LSSAYT 279 (279)
Q Consensus 274 spdg~~ 279 (279)
+|||++
T Consensus 439 s~d~~~ 444 (459)
T KOG0272|consen 439 SPDSQA 444 (459)
T ss_pred ccCCce
Confidence 999964
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-37 Score=232.55 Aligned_cols=200 Identities=21% Similarity=0.274 Sum_probs=174.3
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC--CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD--GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
.+.+|+.+...... ++.||.+.|.++.|+|. +..+|||+.||++++|++++.....
T Consensus 198 ~~kvW~~~~~~~~~------~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~---------------- 255 (459)
T KOG0272|consen 198 LVKVWSVPQCNLLQ------TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ---------------- 255 (459)
T ss_pred ceeEeecCCcceeE------EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh----------------
Confidence 45677777765554 89999999999999996 5689999999999999998643221
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG- 191 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 191 (279)
-..+|...|..++| +|+|++|++++.|.+-++||++++..+....+|.. .|.+++|+|||.++++|
T Consensus 256 -~l~gH~~RVs~Vaf-------HPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~-----~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 256 -DLEGHLARVSRVAF-------HPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSK-----GVFSIAFQPDGSLAATGG 322 (459)
T ss_pred -hhhcchhhheeeee-------cCCCceeeecccccchhhcccccchhhHhhccccc-----ccceeEecCCCceeeccC
Confidence 23456678888877 77899999999999999999999998887788876 99999999999999976
Q ss_pred cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEE
Q 023672 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHV 271 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~ 271 (279)
.|..-+|||++++ .++..+ .+|..+|.+++|+| +|..|+||+.|++++|||++..++++++++|.+-|+.+
T Consensus 323 lD~~~RvWDlRtg----r~im~L----~gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 323 LDSLGRVWDLRTG----RCIMFL----AGHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQV 393 (459)
T ss_pred ccchhheeecccC----cEEEEe----cccccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhhe
Confidence 9999999999996 555556 78999999999999 99999999999999999999999999999999999999
Q ss_pred EEcc-CCC
Q 023672 272 SKLS-SAY 278 (279)
Q Consensus 272 ~~sp-dg~ 278 (279)
.|+| .|+
T Consensus 394 k~~p~~g~ 401 (459)
T KOG0272|consen 394 KYSPQEGY 401 (459)
T ss_pred EecccCCe
Confidence 9999 444
No 4
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-34 Score=204.37 Aligned_cols=210 Identities=20% Similarity=0.308 Sum_probs=169.2
Q ss_pred cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672 30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109 (279)
Q Consensus 30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 109 (279)
..+...+.+|++..... ..-...+.+.||...|..+..++||++.++++.|+++++||+.+++..
T Consensus 34 asrDk~ii~W~L~~dd~-~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t-------------- 98 (315)
T KOG0279|consen 34 ASRDKTIIVWKLTSDDI-KYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGEST-------------- 98 (315)
T ss_pred cccceEEEEEEeccCcc-ccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEE--------------
Confidence 44555667777655422 122234478999999999999999999999999999999999976432
Q ss_pred ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC--CCE
Q 023672 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTK 187 (279)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 187 (279)
....+|...|.++++ ++|.+.+++|+.|.+|++||+... +..++..... ...|.|+.|+|+ ..+
T Consensus 99 ---~~f~GH~~dVlsva~-------s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~---~~WVscvrfsP~~~~p~ 164 (315)
T KOG0279|consen 99 ---RRFVGHTKDVLSVAF-------STDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSH---REWVSCVRFSPNESNPI 164 (315)
T ss_pred ---EEEEecCCceEEEEe-------cCCCceeecCCCcceeeeeeeccc-EEEEEecCCC---cCcEEEEEEcCCCCCcE
Confidence 245678889999876 788999999999999999998754 4444443321 128999999998 456
Q ss_pred EEE-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC
Q 023672 188 IFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266 (279)
Q Consensus 188 l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 266 (279)
|++ |.|++|++||+++ ..+...+.+|.+.++.+++|| +|.++++|+.||.+.+||++.++.++.+. |..
T Consensus 165 Ivs~s~DktvKvWnl~~--------~~l~~~~~gh~~~v~t~~vSp-DGslcasGgkdg~~~LwdL~~~k~lysl~-a~~ 234 (315)
T KOG0279|consen 165 IVSASWDKTVKVWNLRN--------CQLRTTFIGHSGYVNTVTVSP-DGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFD 234 (315)
T ss_pred EEEccCCceEEEEccCC--------cchhhccccccccEEEEEECC-CCCEEecCCCCceEEEEEccCCceeEecc-CCC
Confidence 664 5999999999997 234444479999999999999 99999999999999999999999999888 778
Q ss_pred CEEEEEEccCCC
Q 023672 267 GVTHVSKLSSAY 278 (279)
Q Consensus 267 ~v~~~~~spdg~ 278 (279)
.|.+++|+|+..
T Consensus 235 ~v~sl~fspnry 246 (315)
T KOG0279|consen 235 IVNSLCFSPNRY 246 (315)
T ss_pred eEeeEEecCCce
Confidence 999999999853
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.9e-35 Score=235.71 Aligned_cols=187 Identities=25% Similarity=0.361 Sum_probs=168.8
Q ss_pred eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
+++.||.++|..+.|+|+.++|+++|.|++|++|.+.+.... +...+|..+|+++.|
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~-----------------V~y~GH~~PVwdV~F------ 501 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCL-----------------VIYKGHLAPVWDVQF------ 501 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeE-----------------EEecCCCcceeeEEe------
Confidence 368899999999999999999999999999999999975331 244577889999987
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~ 212 (279)
+|.|-++|+++.|++-++|......+++.+.+|-. .|.|+.|+|++.++++| .|.+|++||+.++ ....
T Consensus 502 -~P~GyYFatas~D~tArLWs~d~~~PlRifaghls-----DV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G----~~VR 571 (707)
T KOG0263|consen 502 -APRGYYFATASHDQTARLWSTDHNKPLRIFAGHLS-----DVDCVSFHPNSNYVATGSSDRTVRLWDVSTG----NSVR 571 (707)
T ss_pred -cCCceEEEecCCCceeeeeecccCCchhhhccccc-----ccceEEECCcccccccCCCCceEEEEEcCCC----cEEE
Confidence 66799999999999999999999999999988876 89999999999999987 9999999999985 2233
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
.+ .||.++|.+++||| +|.+|++|++||.|.+||+.+++++..+.+|.+.|.+|.||.||.
T Consensus 572 iF----~GH~~~V~al~~Sp-~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~ 632 (707)
T KOG0263|consen 572 IF----TGHKGPVTALAFSP-CGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGN 632 (707)
T ss_pred Ee----cCCCCceEEEEEcC-CCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCC
Confidence 33 79999999999999 999999999999999999999999999999999999999999984
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.3e-34 Score=210.97 Aligned_cols=189 Identities=22% Similarity=0.330 Sum_probs=161.8
Q ss_pred eeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEee
Q 023672 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (279)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (279)
..++...+.||.++|.|++|+|+|+.|++|+.|.++++||+.+.... ....+|.+.|.+++|
T Consensus 104 vtrCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~-----------------~t~KgH~~WVlcvaw- 165 (480)
T KOG0271|consen 104 VTRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPL-----------------FTCKGHKNWVLCVAW- 165 (480)
T ss_pred cceeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcc-----------------eeecCCccEEEEEEE-
Confidence 44566689999999999999999999999999999999999864221 134567789999988
Q ss_pred CcccccCCCCcEEEEecCCCcEEEEECCCCeee-EEEeccCccccccceeeEEECC-----CCCEEEEe-cCCeEEEEEc
Q 023672 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNP-----TGTKIFAG-YNKSVRVFDV 201 (279)
Q Consensus 129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~-----~~~~l~~~-~d~~i~~~d~ 201 (279)
+|||..||+|+.||+|++||..+|+++ ..+..|.. .|++++|.| ..++++++ .||.++|||+
T Consensus 166 ------sPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K-----~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 166 ------SPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKK-----WITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred ------CCCcchhhccccCCeEEEecCCCCCcccccccCccc-----ceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 789999999999999999999998654 56777776 999999987 45778855 9999999999
Q ss_pred cCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
..+ .+...+ .+|+.+|+|++|-- ..+|++|+.|++|++|+...|.+...+++|..+|+.|+.|.|
T Consensus 235 ~~~----~~~~~l----sgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTd 299 (480)
T KOG0271|consen 235 KLG----TCVRTL----SGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTD 299 (480)
T ss_pred cCc----eEEEEe----ccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccch
Confidence 874 344444 79999999999965 459999999999999999999999999999999999998843
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-33 Score=200.46 Aligned_cols=202 Identities=15% Similarity=0.225 Sum_probs=164.3
Q ss_pred eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
-.+++||+.+++..+ .+.||...|.+++|++|.+.+++|+.|.+|++|+.-..... .
T Consensus 85 ~~lrlWDl~~g~~t~------~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~-----------------t 141 (315)
T KOG0279|consen 85 GTLRLWDLATGESTR------RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKY-----------------T 141 (315)
T ss_pred ceEEEEEecCCcEEE------EEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEE-----------------E
Confidence 367899999987765 78899999999999999999999999999999998754221 0
Q ss_pred eee-cCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672 114 LVV-TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG- 191 (279)
Q Consensus 114 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 191 (279)
+.. .+.+.|.+++|+|+ ++..+|++++.|++|++||+++.+....+.+|.. .++.++++|||.++++|
T Consensus 142 ~~~~~~~~WVscvrfsP~-----~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~-----~v~t~~vSpDGslcasGg 211 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPN-----ESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG-----YVNTVTVSPDGSLCASGG 211 (315)
T ss_pred EecCCCcCcEEEEEEcCC-----CCCcEEEEccCCceEEEEccCCcchhhccccccc-----cEEEEEECCCCCEEecCC
Confidence 111 12578999999774 3467999999999999999999998888888776 89999999999999976
Q ss_pred cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee----c---
Q 023672 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG----Q--- 264 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~----~--- 264 (279)
.||.+.+||++.+ +.+..+ +|...|.+++|+| +..+|+.+. +..|+|||+.++.++..+.. .
T Consensus 212 kdg~~~LwdL~~~----k~lysl-----~a~~~v~sl~fsp-nrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~ 280 (315)
T KOG0279|consen 212 KDGEAMLWDLNEG----KNLYSL-----EAFDIVNSLCFSP-NRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSK 280 (315)
T ss_pred CCceEEEEEccCC----ceeEec-----cCCCeEeeEEecC-CceeEeecc-CCceEEEeccchhhhhhccccccccccc
Confidence 9999999999984 223333 6778999999999 887777665 45599999999988766542 1
Q ss_pred --CCCEEEEEEccCCCC
Q 023672 265 --EGGVTHVSKLSSAYT 279 (279)
Q Consensus 265 --~~~v~~~~~spdg~~ 279 (279)
.....+++||+||++
T Consensus 281 ~~~~~clslaws~dG~t 297 (315)
T KOG0279|consen 281 AGDPICLSLAWSADGQT 297 (315)
T ss_pred cCCcEEEEEEEcCCCcE
Confidence 224578999999974
No 8
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.6e-32 Score=191.59 Aligned_cols=209 Identities=18% Similarity=0.205 Sum_probs=170.0
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+++||+.+...- +..++.+|+..|+++.|..+|++++||++||+++|||++..... .
T Consensus 62 hvRlyD~~S~np~----Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q------------------R 119 (311)
T KOG0315|consen 62 HVRLYDLNSNNPN----PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ------------------R 119 (311)
T ss_pred eeEEEEccCCCCC----ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccc------------------h
Confidence 5778888877652 33478899999999999999999999999999999999963321 2
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (279)
...+..+|+++.. +|+...|++|..+|.|++||+....+...+..... .+|.++...|+|..+++. ..
T Consensus 120 ~~~~~spVn~vvl-------hpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~----~~i~sl~v~~dgsml~a~nnk 188 (311)
T KOG0315|consen 120 NYQHNSPVNTVVL-------HPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD----TSIQSLTVMPDGSMLAAANNK 188 (311)
T ss_pred hccCCCCcceEEe-------cCCcceEEeecCCCcEEEEEccCCccccccCCCCC----cceeeEEEcCCCcEEEEecCC
Confidence 2344578888876 66777899999999999999998766555543332 289999999999999977 88
Q ss_pred CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEE
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVS 272 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~ 272 (279)
|..++|++-. ......+ ....++..|.+.+..+.+|| ++.+|++++.|.+++||+..+. +....+.+|..++++.+
T Consensus 189 G~cyvW~l~~-~~~~s~l-~P~~k~~ah~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~ 265 (311)
T KOG0315|consen 189 GNCYVWRLLN-HQTASEL-EPVHKFQAHNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCA 265 (311)
T ss_pred ccEEEEEccC-CCccccc-eEhhheecccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeee
Confidence 9999999976 2222222 12233479999999999999 9999999999999999999988 66678899999999999
Q ss_pred EccCCCC
Q 023672 273 KLSSAYT 279 (279)
Q Consensus 273 ~spdg~~ 279 (279)
||.||+|
T Consensus 266 FS~dg~Y 272 (311)
T KOG0315|consen 266 FSADGEY 272 (311)
T ss_pred eccCccE
Confidence 9999987
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.7e-31 Score=191.48 Aligned_cols=191 Identities=13% Similarity=0.209 Sum_probs=162.3
Q ss_pred eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
+..++++||.+.|.++.|++|.++|+++|.||.+.|||.-+..... ........|..++|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h-----------------aipl~s~WVMtCA~--- 105 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH-----------------AIPLPSSWVMTCAY--- 105 (343)
T ss_pred eeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee-----------------EEecCceeEEEEEE---
Confidence 3446899999999999999999999999999999999987653321 12223346777766
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCC------eeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCC
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTG------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~ 204 (279)
+|.|+++|+|+.|+...||++.+. +..+.+..|.. .+.|+.|-+|+.+|.++.|.+..+||++++
T Consensus 106 ----sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtg-----ylScC~f~dD~~ilT~SGD~TCalWDie~g 176 (343)
T KOG0286|consen 106 ----SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTG-----YLSCCRFLDDNHILTGSGDMTCALWDIETG 176 (343)
T ss_pred ----CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccc-----eeEEEEEcCCCceEecCCCceEEEEEcccc
Confidence 889999999999999999999865 34455667765 889999999887777779999999999995
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+....+ .+|.+.|.++.++|.+++.+++|+-|+..+|||+|.+.+.++|.+|++.|+++.|.|+|.
T Consensus 177 ----~~~~~f----~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~ 242 (343)
T KOG0286|consen 177 ----QQTQVF----HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGD 242 (343)
T ss_pred ----eEEEEe----cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCC
Confidence 444444 799999999999998889999999999999999999999999999999999999999984
No 10
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=192.12 Aligned_cols=205 Identities=20% Similarity=0.280 Sum_probs=171.7
Q ss_pred EecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec
Q 023672 38 RFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT 117 (279)
Q Consensus 38 ~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (279)
+|++.+...-......+.+.+|++.+.|+.|.+|+ .|+|+|.|.+..+||+++++... ...+
T Consensus 123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~-----------------~f~G 184 (343)
T KOG0286|consen 123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQ-----------------VFHG 184 (343)
T ss_pred EEecccccccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEE-----------------EecC
Confidence 45554442222233445799999999999999865 68899999999999999876532 3446
Q ss_pred CCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeE
Q 023672 118 EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSV 196 (279)
Q Consensus 118 ~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i 196 (279)
|.+.|.++...|. +++.+++|+-|+..++||++.+.+++.|..|.. .|.++.|.|+|.-+++| .|++.
T Consensus 185 H~gDV~slsl~p~------~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghes-----DINsv~ffP~G~afatGSDD~tc 253 (343)
T KOG0286|consen 185 HTGDVMSLSLSPS------DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHES-----DINSVRFFPSGDAFATGSDDATC 253 (343)
T ss_pred CcccEEEEecCCC------CCCeEEecccccceeeeeccCcceeEeeccccc-----ccceEEEccCCCeeeecCCCcee
Confidence 7788998877442 888999999999999999999999999999987 99999999999999987 99999
Q ss_pred EEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 197 RVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 197 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
++||+|. .+.+..+.. .....+|++++||. .|++|++|..|.++.+||.-.++.+..|.+|+..|.++..+||
T Consensus 254 RlyDlRa-D~~~a~ys~-----~~~~~gitSv~FS~-SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 254 RLYDLRA-DQELAVYSH-----DSIICGITSVAFSK-SGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPD 326 (343)
T ss_pred EEEeecC-CcEEeeecc-----CcccCCceeEEEcc-cccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCC
Confidence 9999998 443333321 34456899999999 9999999999999999999999999999999999999999999
Q ss_pred CC
Q 023672 277 AY 278 (279)
Q Consensus 277 g~ 278 (279)
|-
T Consensus 327 G~ 328 (343)
T KOG0286|consen 327 GM 328 (343)
T ss_pred Cc
Confidence 84
No 11
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=5e-32 Score=199.41 Aligned_cols=191 Identities=16% Similarity=0.279 Sum_probs=165.2
Q ss_pred eeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEee
Q 023672 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (279)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (279)
.+...+.+.+|.+.|.|+++.|..++|++|+.|++++|||+.++++.- ...+|-..|..+++
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-----------------tltGhi~~vr~vav- 201 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-----------------TLTGHIETVRGVAV- 201 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-----------------eecchhheeeeeee-
Confidence 455667899999999999999999999999999999999999886532 22345567777766
Q ss_pred CcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCc
Q 023672 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~ 207 (279)
|+-..++++++.|+.|+.||++..+.++.+.+|-. .|+|++.+|.-..|++| .|..++|||+++.
T Consensus 202 ------S~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS-----~V~~L~lhPTldvl~t~grDst~RvWDiRtr--- 267 (460)
T KOG0285|consen 202 ------SKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLS-----GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTR--- 267 (460)
T ss_pred ------cccCceEEEecCCCeeEEEechhhhhHHHhccccc-----eeEEEeccccceeEEecCCcceEEEeeeccc---
Confidence 55566999999999999999999999998888776 99999999999999865 9999999999983
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
..+..+ .+|..+|.++.+.| -...+++|+.|++|++||++.|+...++..|...|++++.+|.-
T Consensus 268 -~~V~~l----~GH~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e 331 (460)
T KOG0285|consen 268 -ASVHVL----SGHTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE 331 (460)
T ss_pred -ceEEEe----cCCCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCch
Confidence 223334 79999999999999 55678999999999999999999999999999999999999863
No 12
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-31 Score=197.59 Aligned_cols=205 Identities=20% Similarity=0.244 Sum_probs=175.5
Q ss_pred eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
...+++||..++++.. .+.||++.|..++|+..|++|++++.|-.+++||..+... + .
T Consensus 129 d~tikv~D~~tg~~e~------~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~------c----------~ 186 (406)
T KOG0295|consen 129 DATIKVFDTETGELER------SLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFR------C----------I 186 (406)
T ss_pred CceEEEEEccchhhhh------hhhccccceeEEEEecCccEEEecCCccchhheeHHHHHH------H----------H
Confidence 3356788988888855 8999999999999999999999999999999999985211 0 0
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG- 191 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 191 (279)
....+|...|.++.|.| .|.+|++++.|.+|+.|++.++-++.++..|.. .|..+..+.||.+++++
T Consensus 187 ks~~gh~h~vS~V~f~P-------~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-----wvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLP-------LGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-----WVRMVRVNQDGTIIASCS 254 (406)
T ss_pred HHhcCcccceeeEEEEe-------cCCeeeecccccceeEEecccceeEEeccCchH-----hEEEEEecCCeeEEEecC
Confidence 13345667788887754 578999999999999999999999999999987 99999999999999966
Q ss_pred cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC--------------CCcEEEEEeCCCcEEEEecCCCeE
Q 023672 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--------------HTGMLAIGSYSQTSAIYREDNMEL 257 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------------~~~~l~~~~~dg~i~~wd~~~~~~ 257 (279)
.|.++++|-+.+. .+...+ ..|..+|-+++|-|. .++++++++.|++|++||+.++.+
T Consensus 255 ~dqtl~vW~~~t~----~~k~~l----R~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c 326 (406)
T KOG0295|consen 255 NDQTLRVWVVATK----QCKAEL----REHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC 326 (406)
T ss_pred CCceEEEEEeccc----hhhhhh----hccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE
Confidence 9999999999873 222233 688889999999873 346999999999999999999999
Q ss_pred EEEEeecCCCEEEEEEccCCCC
Q 023672 258 LYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 258 ~~~~~~~~~~v~~~~~spdg~~ 279 (279)
+.++.+|..+|.+++|+|.|||
T Consensus 327 L~tL~ghdnwVr~~af~p~Gky 348 (406)
T KOG0295|consen 327 LFTLVGHDNWVRGVAFSPGGKY 348 (406)
T ss_pred EEEEecccceeeeeEEcCCCeE
Confidence 9999999999999999999997
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.2e-30 Score=181.69 Aligned_cols=195 Identities=22% Similarity=0.367 Sum_probs=167.5
Q ss_pred eeccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 53 FRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
.+.+.+|.+.|..++|+|- |..||+|+.|..|+||+...+.. -.+ ...+...|...|.+++|
T Consensus 7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----~~c---------k~vld~~hkrsVRsvAw---- 69 (312)
T KOG0645|consen 7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----WTC---------KTVLDDGHKRSVRSVAW---- 69 (312)
T ss_pred EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----EEE---------EEeccccchheeeeeee----
Confidence 4478999999999999997 88999999999999999984211 001 11244567889999988
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCce
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDF 208 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~ 208 (279)
+|.|++|++++.|.++.||.-..+ +++.++.+|.. .|.+++|+++|++||+ +.|..|.+|.+.. +..+
T Consensus 70 ---sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEn-----EVK~Vaws~sG~~LATCSRDKSVWiWe~de-ddEf 140 (312)
T KOG0645|consen 70 ---SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHEN-----EVKCVAWSASGNYLATCSRDKSVWIWEIDE-DDEF 140 (312)
T ss_pred ---cCCCcEEEEeeccceEEEeecCCCceeEEeeeecccc-----ceeEEEEcCCCCEEEEeeCCCeEEEEEecC-CCcE
Confidence 778999999999999999987655 67788888887 9999999999999995 5999999999985 6778
Q ss_pred eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC---CCeEEEEEeecCCCEEEEEEccCCC
Q 023672 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---NMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~---~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
.+...+ ..|...|..+.|+| ...+|++++.|++|++|+-. ..++..++.+|...|++++|+|.|.
T Consensus 141 ec~aVL----~~HtqDVK~V~WHP-t~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 141 ECIAVL----QEHTQDVKHVIWHP-TEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGS 208 (312)
T ss_pred EEEeee----ccccccccEEEEcC-CcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCc
Confidence 887777 79999999999999 88999999999999999876 4578999999999999999999883
No 14
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.98 E-value=2e-32 Score=204.37 Aligned_cols=184 Identities=20% Similarity=0.355 Sum_probs=163.5
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+.+|.++|++|.|++++.++++|+.+|.|++|+.+-.. +..+..++...|.+++|
T Consensus 133 ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn-----------------Vk~~~ahh~eaIRdlaf------- 188 (464)
T KOG0284|consen 133 ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN-----------------VKIIQAHHAEAIRDLAF------- 188 (464)
T ss_pred HhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh-----------------hHHhhHhhhhhhheecc-------
Confidence 678999999999999999999999999999999986321 11244566688999876
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+|+...+++|+.||+|+|||....+....+.+|+- .|.+++|+|.-.+++++ .|..|++||.+++ .++.+
T Consensus 189 SpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgw-----dVksvdWHP~kgLiasgskDnlVKlWDprSg----~cl~t 259 (464)
T KOG0284|consen 189 SPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGW-----DVKSVDWHPTKGLIASGSKDNLVKLWDPRSG----SCLAT 259 (464)
T ss_pred CCCCceeEEecCCCeEEEEeccCCchhheeccCCC-----CcceeccCCccceeEEccCCceeEeecCCCc----chhhh
Confidence 77788999999999999999999988888888886 89999999998888866 8999999999995 55555
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
+ .+|+..|..+.|+| ++.+|+++|.|..++++|+++.+.+.++++|...|++++|+|-
T Consensus 260 l----h~HKntVl~~~f~~-n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~ 317 (464)
T KOG0284|consen 260 L----HGHKNTVLAVKFNP-NGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPL 317 (464)
T ss_pred h----hhccceEEEEEEcC-CCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccc
Confidence 5 79999999999999 8899999999999999999999999999999999999999983
No 15
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.98 E-value=5.7e-31 Score=211.26 Aligned_cols=199 Identities=18% Similarity=0.303 Sum_probs=168.1
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccc-----c---------cccccCCCCcccceeeecCCCceEEE
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV-----N---------ACSLAKDQDSYEASLVVTEGESVYDF 125 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~~v~~~ 125 (279)
...++|..|++|++.||.|-.|..|++|.+...++.... . .................+|.++|+.+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 356999999999999999999999999999854321100 0 01112223334445577899999999
Q ss_pred EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP 204 (279)
Q Consensus 126 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~ 204 (279)
.| +|+.++|++|+.|+++++|.+.+..++..+++|.. +|+.+.|+|.|.+++++ .|++.++|.....
T Consensus 458 sF-------sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~-----PVwdV~F~P~GyYFatas~D~tArLWs~d~~ 525 (707)
T KOG0263|consen 458 SF-------SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLA-----PVWDVQFAPRGYYFATASHDQTARLWSTDHN 525 (707)
T ss_pred ee-------cccccceeeccCCcceeeeecccceeEEEecCCCc-----ceeeEEecCCceEEEecCCCceeeeeecccC
Confidence 87 77899999999999999999999999999998887 99999999999999965 9999999999872
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
.+ ...+ .+|-+.|.|+.|+| +..++++||.|.++++||+.+|..+..|.+|.++|.+++|||+|+|
T Consensus 526 -~P---lRif----aghlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 526 -KP---LRIF----AGHLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred -Cc---hhhh----cccccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 22 2223 79999999999999 9999999999999999999999999999999999999999999987
No 16
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=3.4e-30 Score=185.45 Aligned_cols=188 Identities=16% Similarity=0.243 Sum_probs=159.6
Q ss_pred eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|+...... .......|.++|..+.|
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdce----------------N~~~lkgHsgAVM~l~~------ 98 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCE----------------NFWVLKGHSGAVMELHG------ 98 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccccc----------------ceeeeccccceeEeeee------
Confidence 36889999999999999999999999999999999763211 11133478889999988
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~ 211 (279)
.++++.|++++.|.+|+.||+++|+..+.++.|.. .|..+.-+..|..++ ++ .|++++|||+|+. ...
T Consensus 99 -~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~-----~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k----~~~ 168 (338)
T KOG0265|consen 99 -MRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTS-----FVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK----EAI 168 (338)
T ss_pred -ccCCCEEEEecCCceEEEEecccceeeehhccccc-----eeeecCccccCCeEEEecCCCceEEEEeeccc----chh
Confidence 77899999999999999999999999999999886 788887666677777 55 8999999999972 222
Q ss_pred eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
.++ .....++++.|.. .+..+.+|+-|+.|++||++.+..++++.+|.++|++|..+|+|.+
T Consensus 169 ~t~-----~~kyqltAv~f~d-~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~ 230 (338)
T KOG0265|consen 169 KTF-----ENKYQLTAVGFKD-TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSF 230 (338)
T ss_pred hcc-----ccceeEEEEEecc-cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCc
Confidence 222 2355799999998 8889999999999999999999999999999999999999999864
No 17
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1e-29 Score=193.13 Aligned_cols=187 Identities=21% Similarity=0.332 Sum_probs=155.2
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
+..|++++|+.+|..||+|+.||.++||+...... .....|.++|.++.| +..|.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~------------------~tl~~HkgPI~slKW-------nk~G~ 289 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLI------------------STLGQHKGPIFSLKW-------NKKGT 289 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhh------------------hhhhccCCceEEEEE-------cCCCC
Confidence 35799999999999999999999999999875422 134457789999999 67889
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCcc------------------------------------ccccceeeEEECC
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAV------------------------------------DEITAAFSVAFNP 183 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------------------~~~~~v~~~~~~~ 183 (279)
+|++++.|+++.+||..++.....+..+... +|...|.++.|+|
T Consensus 290 yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~ 369 (524)
T KOG0273|consen 290 YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNP 369 (524)
T ss_pred EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECC
Confidence 9999999999999999877655554333221 4556899999999
Q ss_pred CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC--------CCcEEEEEeCCCcEEEEecCC
Q 023672 184 TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT--------HTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 184 ~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~--------~~~~l~~~~~dg~i~~wd~~~ 254 (279)
.+.+|+++ .|++++||.+... .....+ .+|...|+.+.|+|+ .+..|++++.|++|++||+..
T Consensus 370 tg~LLaS~SdD~TlkiWs~~~~----~~~~~l----~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~ 441 (524)
T KOG0273|consen 370 TGSLLASCSDDGTLKIWSMGQS----NSVHDL----QAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVES 441 (524)
T ss_pred CCceEEEecCCCeeEeeecCCC----cchhhh----hhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccC
Confidence 99999965 9999999998763 222223 788889999999984 344799999999999999999
Q ss_pred CeEEEEEeecCCCEEEEEEccCCCC
Q 023672 255 MELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 255 ~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
+.++.+|..|..+|.+++|||+|+|
T Consensus 442 gv~i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 442 GVPIHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred CceeEeeccCCCceEEEEecCCCcE
Confidence 9999999999999999999999986
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=1.7e-29 Score=191.95 Aligned_cols=214 Identities=19% Similarity=0.309 Sum_probs=170.0
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc-----------
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL----------- 103 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~----------- 103 (279)
.+++|+....... ++..|+++|.++.|+.+|++|++++.|+++.+||..++...+.......
T Consensus 258 ~~riw~~~G~l~~-------tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~ 330 (524)
T KOG0273|consen 258 EARIWNKDGNLIS-------TLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND 330 (524)
T ss_pred EEEEEecCchhhh-------hhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence 4566666554443 6888999999999999999999999999999999977754222111100
Q ss_pred ---cC-----------CCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCc
Q 023672 104 ---AK-----------DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA 169 (279)
Q Consensus 104 ---~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~ 169 (279)
.. ..+.++.. ..+|.++|..+.| +|.+.+|++++.|++++||..........+..|..
T Consensus 331 ~F~ts~td~~i~V~kv~~~~P~~t-~~GH~g~V~alk~-------n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk 402 (524)
T KOG0273|consen 331 EFATSSTDGCIHVCKVGEDRPVKT-FIGHHGEVNALKW-------NPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK 402 (524)
T ss_pred eEeecCCCceEEEEEecCCCccee-eecccCceEEEEE-------CCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc
Confidence 00 12222222 3347778888888 66799999999999999999998888888888886
Q ss_pred cccccceeeEEECCCC---------CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEE
Q 023672 170 VDEITAAFSVAFNPTG---------TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239 (279)
Q Consensus 170 ~~~~~~v~~~~~~~~~---------~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~ 239 (279)
.|+.+.|+|.| ..++ ++.|++|++||+..+ .++..+ ..|..+|++++|+| ++.+++
T Consensus 403 -----ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g----v~i~~f----~kH~~pVysvafS~-~g~ylA 468 (524)
T KOG0273|consen 403 -----EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG----VPIHTL----MKHQEPVYSVAFSP-NGRYLA 468 (524)
T ss_pred -----ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC----ceeEee----ccCCCceEEEEecC-CCcEEE
Confidence 89999999965 2455 559999999999985 444454 68999999999999 999999
Q ss_pred EEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 240 IGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 240 ~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+|+.||.|.+|+.++++..+.+.+ .+.|..++|+.+|.
T Consensus 469 sGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 469 SGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNAAGD 506 (524)
T ss_pred ecCCCCeeEeccccchheeEeecC-CCeEEEEEEcCCCC
Confidence 999999999999999999988885 56799999998874
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=2.1e-29 Score=201.63 Aligned_cols=186 Identities=21% Similarity=0.288 Sum_probs=157.3
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
..+||...+++++++|||+++|||+.||.|+|||...+-+ ......|...|+.+.|
T Consensus 345 KQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC-----------------~vTFteHts~Vt~v~f------- 400 (893)
T KOG0291|consen 345 KQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFC-----------------FVTFTEHTSGVTAVQF------- 400 (893)
T ss_pred eccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceE-----------------EEEeccCCCceEEEEE-------
Confidence 6789999999999999999999999999999999986533 2245667789999988
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC-CeEEEEEccCCCCceeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-KSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-~~i~~~d~~~~~~~~~~~~ 212 (279)
+..++.+++++.||+|+.||+...+..+++..+.. ....|++..|.|.++.+| .| -.|.+|++.++ +.+-
T Consensus 401 ~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p----~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG----qllD 472 (893)
T KOG0291|consen 401 TARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP----IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG----QLLD 472 (893)
T ss_pred EecCCEEEEeecCCeEEeeeecccceeeeecCCCc----eeeeEEEEcCCCCEEEeeccceEEEEEEEeecC----eeee
Confidence 66899999999999999999999888888877654 267789999999999877 44 57999999995 3333
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEEEccCCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
.+ .||.++|.+++|+| .+..|++|+.|.+|++||+-.. ..+.++. +...+.+++|+|||+
T Consensus 473 iL----sGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPdG~ 533 (893)
T KOG0291|consen 473 IL----SGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPDGK 533 (893)
T ss_pred hh----cCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCCCC
Confidence 33 89999999999999 8999999999999999998654 3455666 567799999999996
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=6.5e-29 Score=202.10 Aligned_cols=189 Identities=22% Similarity=0.363 Sum_probs=155.9
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+.+|...|.+++|+|+++++++++.|++|+|||+..... .......|...|++++|
T Consensus 198 ~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~----------------~~~~l~gH~~~v~~~~f------- 254 (456)
T KOG0266|consen 198 ELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR----------------NLKTLKGHSTYVTSVAF------- 254 (456)
T ss_pred cccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe----------------EEEEecCCCCceEEEEe-------
Confidence 5689999999999999999999999999999999943211 11134478889999977
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+|+++.+++|+.|++|++||++++++...+..|.. .|.+++|++++++|+++ .|+.|++||+.++... +...
T Consensus 255 ~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~-----~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~--~~~~ 327 (456)
T KOG0266|consen 255 SPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD-----GISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL--CLKL 327 (456)
T ss_pred cCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC-----ceEEEEECCCCCEEEEcCCCccEEEEECCCCcee--eeec
Confidence 77889999999999999999999999999999987 99999999999999976 8999999999984211 1222
Q ss_pred cccccCCCCC--ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCE---EEEEEccCCC
Q 023672 214 LKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV---THVSKLSSAY 278 (279)
Q Consensus 214 ~~~~~~~~~~--~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v---~~~~~spdg~ 278 (279)
+ .++.. ++++++|+| ++.++++++.|+.+++||++.+.++..+.+|...+ .+...+++|+
T Consensus 328 ~----~~~~~~~~~~~~~fsp-~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 328 L----SGAENSAPVTSVQFSP-NGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred c----cCCCCCCceeEEEECC-CCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 2 23333 599999999 99999999999999999999999999999887743 3334445554
No 21
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.1e-30 Score=187.67 Aligned_cols=190 Identities=18% Similarity=0.260 Sum_probs=165.7
Q ss_pred eeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeC
Q 023672 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (279)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (279)
+++.+...+|...|.++.|-|.|.+++++++|.+|+.|++.++.... ....|...|..+..
T Consensus 183 ~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~-----------------t~~~h~ewvr~v~v-- 243 (406)
T KOG0295|consen 183 FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVK-----------------TFPGHSEWVRMVRV-- 243 (406)
T ss_pred HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEE-----------------eccCchHhEEEEEe--
Confidence 34555889999999999999999999999999999999999875532 23445556666644
Q ss_pred cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC----------C-----CEEEEe-cC
Q 023672 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT----------G-----TKIFAG-YN 193 (279)
Q Consensus 130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----------~-----~~l~~~-~d 193 (279)
+.||.++++++.|.+|++|-+.++++...++.|.. +|.+++|-|. + .+++++ .|
T Consensus 244 -----~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh-----~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrD 313 (406)
T KOG0295|consen 244 -----NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH-----PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRD 313 (406)
T ss_pred -----cCCeeEEEecCCCceEEEEEeccchhhhhhhcccc-----ceEEEEecccccCcchhhccCCCCCccEEEeeccc
Confidence 78999999999999999999999999999999887 8999999773 1 366666 99
Q ss_pred CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK 273 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 273 (279)
++|++||+.++ .++.++ .+|...|..++|+| +|.+|+++.+|+++++||+++++++.++..|..-|+++.|
T Consensus 314 ktIk~wdv~tg----~cL~tL----~ghdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDf 384 (406)
T KOG0295|consen 314 KTIKIWDVSTG----MCLFTL----VGHDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDF 384 (406)
T ss_pred ceEEEEeccCC----eEEEEE----ecccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEec
Confidence 99999999996 666677 79999999999999 9999999999999999999999999999999999999999
Q ss_pred ccCC
Q 023672 274 LSSA 277 (279)
Q Consensus 274 spdg 277 (279)
+.+.
T Consensus 385 h~~~ 388 (406)
T KOG0295|consen 385 HKTA 388 (406)
T ss_pred CCCC
Confidence 8764
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=5.2e-29 Score=202.66 Aligned_cols=189 Identities=26% Similarity=0.380 Sum_probs=159.9
Q ss_pred ccCCC-CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIP-NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h-~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
.+.+| ...|.++.|+++|+.|++++.|+.+++|+...... .... ....|...|.+++|
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--------------~~~~-~l~~h~~~v~~~~f------ 211 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--------------NLLR-ELSGHTRGVSDVAF------ 211 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--------------hhhc-cccccccceeeeEE------
Confidence 44444 78899999999999999999999999999965431 0000 11456678999988
Q ss_pred cCCCCcEEEEecCCCcEEEEEC-CCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~ 211 (279)
+|++.++++++.|++|++||+ ..+..++++..|.. .|++++|+|+++++++| .|++|++||++++ ++.
T Consensus 212 -s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~-----~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~----~~~ 281 (456)
T KOG0266|consen 212 -SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST-----YVTSVAFSPDGNLLVSGSDDGTVRIWDVRTG----ECV 281 (456)
T ss_pred -CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCC-----ceEEEEecCCCCEEEEecCCCcEEEEeccCC----eEE
Confidence 778999999999999999999 55588999999887 99999999999888877 9999999999983 343
Q ss_pred eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe--EEEEEeecCCC--EEEEEEccCCCC
Q 023672 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME--LLYVLHGQEGG--VTHVSKLSSAYT 279 (279)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~--v~~~~~spdg~~ 279 (279)
..+ .+|...|++++|++ ++.+|++++.|+.|++||+.++. ++..+..+... ++.+.|+|+|+|
T Consensus 282 ~~l----~~hs~~is~~~f~~-d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ 348 (456)
T KOG0266|consen 282 RKL----KGHSDGISGLAFSP-DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKY 348 (456)
T ss_pred Eee----eccCCceEEEEECC-CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcE
Confidence 444 79999999999999 99999999999999999999999 66788777655 999999999975
No 23
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.9e-30 Score=197.61 Aligned_cols=206 Identities=18% Similarity=0.262 Sum_probs=167.0
Q ss_pred eeeEecCCC-CcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 35 PLIRFDVPP-HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
.+++|++.. +++++ ++.||..+|.+++|+++|..|++++.|+.|++||.++|+..
T Consensus 238 ~vklW~vy~~~~~lr------tf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~------------------ 293 (503)
T KOG0282|consen 238 LVKLWNVYDDRRCLR------TFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVL------------------ 293 (503)
T ss_pred eEEEEEEecCcceeh------hhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEE------------------
Confidence 566777654 44444 89999999999999999999999999999999999998663
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (279)
..+..+..++++.|+|+ +.+.+++|+.|+.|+.||+++++.++.+..|-. .|..+.|-++|+.++++ .
T Consensus 294 ~~f~~~~~~~cvkf~pd------~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg-----~i~~i~F~~~g~rFissSD 362 (503)
T KOG0282|consen 294 SRFHLDKVPTCVKFHPD------NQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG-----AILDITFVDEGRRFISSSD 362 (503)
T ss_pred EEEecCCCceeeecCCC------CCcEEEEecCCCcEEEEeccchHHHHHHHhhhh-----heeeeEEccCCceEeeecc
Confidence 33455567778877554 237899999999999999999998888877665 89999999999988855 9
Q ss_pred CCeEEEEEccCCCCceee---------------------------------------eeecccccCCCC--CceEEEEEc
Q 023672 193 NKSVRVFDVHRPGRDFEK---------------------------------------YSTLKGNKEGQA--GIMSAIAFS 231 (279)
Q Consensus 193 d~~i~~~d~~~~~~~~~~---------------------------------------~~~~~~~~~~~~--~~v~~~~~s 231 (279)
|+.+++|+.+.+- +.+. .......+.+|. +.-..+.||
T Consensus 363 dks~riWe~~~~v-~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 363 DKSVRIWENRIPV-PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred CccEEEEEcCCCc-cchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 9999999998741 1100 011122335553 456678999
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 232 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
| +|.+|++|+.||.+.+||.++.+++..++.|+.++..+.|+|-.
T Consensus 442 p-DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e 486 (503)
T KOG0282|consen 442 P-DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE 486 (503)
T ss_pred C-CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC
Confidence 9 99999999999999999999999999999999999999999953
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.97 E-value=8.5e-29 Score=174.07 Aligned_cols=211 Identities=14% Similarity=0.214 Sum_probs=171.1
Q ss_pred HhcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccC
Q 023672 26 QENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK 105 (279)
Q Consensus 26 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 105 (279)
.+....+..-++.|...++.+.. ++.-..+.|+.+...|+++.||+++. ..|++||++++..
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~r------Tiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np----------- 73 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSR------TIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP----------- 73 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEE------EEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----------
Confidence 34556677788999999999886 55556678999999999999998885 5899999997532
Q ss_pred CCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC
Q 023672 106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185 (279)
Q Consensus 106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (279)
.++ .....+.+.|..+.| ..+|+++++|+.||+++|||++...+.+.+.... +|+++..+|+.
T Consensus 74 ---~Pv-~t~e~h~kNVtaVgF-------~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~s------pVn~vvlhpnQ 136 (311)
T KOG0315|consen 74 ---NPV-ATFEGHTKNVTAVGF-------QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNS------PVNTVVLHPNQ 136 (311)
T ss_pred ---Cce-eEEeccCCceEEEEE-------eecCeEEEecCCCceEEEEeccCcccchhccCCC------CcceEEecCCc
Confidence 111 134456678998877 7799999999999999999999977766666553 99999999999
Q ss_pred CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC------eEE
Q 023672 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM------ELL 258 (279)
Q Consensus 186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~------~~~ 258 (279)
..|++| .+|.|++||+.... +...+. ......|.++...| +|.+|+.+...|..++|++.+. +++
T Consensus 137 teLis~dqsg~irvWDl~~~~----c~~~li---Pe~~~~i~sl~v~~-dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~ 208 (311)
T KOG0315|consen 137 TELISGDQSGNIRVWDLGENS----CTHELI---PEDDTSIQSLTVMP-DGSMLAAANNKGNCYVWRLLNHQTASELEPV 208 (311)
T ss_pred ceEEeecCCCcEEEEEccCCc----cccccC---CCCCcceeeEEEcC-CCcEEEEecCCccEEEEEccCCCccccceEh
Confidence 888888 99999999998731 111111 23346799999999 9999999999999999998754 467
Q ss_pred EEEeecCCCEEEEEEccCCCC
Q 023672 259 YVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 259 ~~~~~~~~~v~~~~~spdg~~ 279 (279)
.+++.|++.+..+.+|||++|
T Consensus 209 ~k~~ah~~~il~C~lSPd~k~ 229 (311)
T KOG0315|consen 209 HKFQAHNGHILRCLLSPDVKY 229 (311)
T ss_pred hheecccceEEEEEECCCCcE
Confidence 889999999999999999986
No 25
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.9e-29 Score=184.36 Aligned_cols=202 Identities=20% Similarity=0.317 Sum_probs=162.5
Q ss_pred cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccc---cc----c-ccccccCCCCcccceeeecCCCceEEEEe
Q 023672 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS---YD----V-NACSLAKDQDSYEASLVVTEGESVYDFCW 127 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~---~~----~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 127 (279)
-.||.+.|-+++..++|.++++||.|.+|+||+....... .. . +.........+.......+|..+|.++.|
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 3499999999999999999999999999999994322110 00 0 00000011122233455678889999999
Q ss_pred eCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCC
Q 023672 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR 206 (279)
Q Consensus 128 ~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~ 206 (279)
++ ...+++++.|.+|+.||+.++..+..+.... .+.++.++|..++|++| .|..+++||.++++.
T Consensus 269 ~d--------~~v~yS~SwDHTIk~WDletg~~~~~~~~~k------sl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g 334 (423)
T KOG0313|consen 269 SD--------ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK------SLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG 334 (423)
T ss_pred cC--------CCceEeecccceEEEEEeecccceeeeecCc------ceeEeecccccceeeecCCCCceeecCCCCCCC
Confidence 43 4589999999999999999999988888766 78999999999999977 999999999999644
Q ss_pred ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEEEeecCCCEEEEEEccC
Q 023672 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~spd 276 (279)
.... ..+ .+|.+.|.++.|+|.+...|++|+.|+++++||+|+.+ +++.+.+|.+.|.++.|+..
T Consensus 335 s~v~-~s~----~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 335 SVVS-QSL----IGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNEG 400 (423)
T ss_pred ceeE-Eee----ecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccCC
Confidence 3333 233 69999999999999888999999999999999999887 99999999999999999865
No 26
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=194.11 Aligned_cols=187 Identities=21% Similarity=0.394 Sum_probs=159.5
Q ss_pred ccCCCC-CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPN-NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~-~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
...+|. ..|++++|+|+...|+++|.||+|+|||....... ....+|+-.|.++.|+
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee-----------------~vL~GHgwdVksvdWH----- 231 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEE-----------------RVLRGHGWDVKSVDWH----- 231 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchh-----------------heeccCCCCcceeccC-----
Confidence 444554 89999999999999999999999999999754221 1336677788888885
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~ 212 (279)
|...+|++++.|..|++||.+++.++.++..|.. .|..+.|+|++++|+++ .|..++++|+++. +.+.
T Consensus 232 --P~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn-----tVl~~~f~~n~N~Llt~skD~~~kv~DiR~m----kEl~ 300 (464)
T KOG0284|consen 232 --PTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN-----TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM----KELF 300 (464)
T ss_pred --CccceeEEccCCceeEeecCCCcchhhhhhhccc-----eEEEEEEcCCCCeeEEccCCceEEEEehhHh----HHHH
Confidence 4566999999999999999999999999999887 99999999999999965 9999999999963 3334
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEccCCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLSSAY 278 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~spdg~ 278 (279)
.+ .+|...|+++.|+|-...+|.+|+.||.|..|.+...+++..+. +|...|++|+|+|=|.
T Consensus 301 ~~----r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGh 363 (464)
T KOG0284|consen 301 TY----RGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGH 363 (464)
T ss_pred Hh----hcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccce
Confidence 44 68999999999999888999999999999999998777766554 6899999999999773
No 27
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.97 E-value=2.3e-28 Score=180.35 Aligned_cols=206 Identities=13% Similarity=0.226 Sum_probs=166.1
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
..++|+..++.... .+.+|++.|+++.|+.+|.+||||..+|.|+||+..++..... +
T Consensus 87 ~AflW~~~~ge~~~------eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~----------------~ 144 (399)
T KOG0296|consen 87 LAFLWDISTGEFAG------ELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWK----------------L 144 (399)
T ss_pred eEEEEEccCCccee------EecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEE----------------e
Confidence 34678888777554 7899999999999999999999999999999999998754211 1
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (279)
. ..+..+.| +.++|.+.+|+.|+.||.+.+|.+.++...+.+.+|.. ++++=.|.|+|+.++++ .|
T Consensus 145 -~---~e~~dieW----l~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~-----~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 145 -D---QEVEDIEW----LKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNS-----PCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred -e---cccCceEE----EEecccccEEEeecCCCcEEEEECCCcceeeEecCCCC-----CcccccccCCCceEEEEecC
Confidence 1 23444444 34477788999999999999999999888888888876 89999999999999988 99
Q ss_pred CeEEEEEccCCCCceeee--------------------------------------------------------------
Q 023672 194 KSVRVFDVHRPGRDFEKY-------------------------------------------------------------- 211 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~-------------------------------------------------------------- 211 (279)
|+|++||+.++ .+...+
T Consensus 212 gti~~Wn~ktg-~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve 290 (399)
T KOG0296|consen 212 GTIIVWNPKTG-QPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVE 290 (399)
T ss_pred ceEEEEecCCC-ceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhh
Confidence 99999999983 221110
Q ss_pred --------------------------eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672 212 --------------------------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (279)
Q Consensus 212 --------------------------~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 265 (279)
....+..-.|..+|..+.|-+ ..+|++++.+|.|+.||.|+|+++.++.+|.
T Consensus 291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~ 368 (399)
T KOG0296|consen 291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQ 368 (399)
T ss_pred hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCc
Confidence 000011134677888999977 4688899999999999999999999999999
Q ss_pred CCEEEEEEccCCC
Q 023672 266 GGVTHVSKLSSAY 278 (279)
Q Consensus 266 ~~v~~~~~spdg~ 278 (279)
.+|.+++.+|+++
T Consensus 369 ~~Il~f~ls~~~~ 381 (399)
T KOG0296|consen 369 MGILDFALSPQKR 381 (399)
T ss_pred hheeEEEEcCCCc
Confidence 9999999999986
No 28
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=1.5e-28 Score=177.12 Aligned_cols=238 Identities=16% Similarity=0.186 Sum_probs=172.6
Q ss_pred cccceeeeeeEecCC-CCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccc-----
Q 023672 28 NQQEYTWPLIRFDVP-PHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC----- 101 (279)
Q Consensus 28 ~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----- 101 (279)
+.+.....+.+|++. ..+ .+-.+++|.++|..+.|++|++.|++++.|.+|+.||+++++........
T Consensus 63 aSgG~Dr~I~LWnv~gdce------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vN 136 (338)
T KOG0265|consen 63 ASGGSDRAIVLWNVYGDCE------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVN 136 (338)
T ss_pred eecCCcceEEEEecccccc------ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceee
Confidence 334444456666532 122 22268899999999999999999999999999999999998764322111
Q ss_pred ----------cc-cCCCCcccceeeecCCCceEEE--EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC
Q 023672 102 ----------SL-AKDQDSYEASLVVTEGESVYDF--CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD 168 (279)
Q Consensus 102 ----------~~-~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~ 168 (279)
.+ ....+...........+.+..+ .+.-..+.|...+..+.+|+.|+.|++||++.+.....+.+|.
T Consensus 137 s~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~ 216 (338)
T KOG0265|consen 137 SLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHA 216 (338)
T ss_pred ecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeeccc
Confidence 00 1112222222222222222111 1222233457788899999999999999999999999999998
Q ss_pred ccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcE
Q 023672 169 AVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTS 247 (279)
Q Consensus 169 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i 247 (279)
. .|+.+..+|+|.++.+- .|.++++||++.--....++..+.....+..-....++|+| ++..+.+|+.|..+
T Consensus 217 D-----tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp-~~~~i~ags~dr~v 290 (338)
T KOG0265|consen 217 D-----TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP-NGTKITAGSADRFV 290 (338)
T ss_pred C-----ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC-CCCccccccccceE
Confidence 7 99999999999999964 99999999998632222334444332222233456789999 99999999999999
Q ss_pred EEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 248 AIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 248 ~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
++||......++.+++|.+.|..++|+|.-
T Consensus 291 yvwd~~~r~~lyklpGh~gsvn~~~Fhp~e 320 (338)
T KOG0265|consen 291 YVWDTTSRRILYKLPGHYGSVNEVDFHPTE 320 (338)
T ss_pred EEeecccccEEEEcCCcceeEEEeeecCCC
Confidence 999999999999999999999999999974
No 29
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-28 Score=171.08 Aligned_cols=184 Identities=23% Similarity=0.352 Sum_probs=157.3
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+..|.++|.++.|+-||++.++++.|.+|++|+...+.+.. ....|+..|.++..
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik-----------------tYsghG~EVlD~~~------- 67 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK-----------------TYSGHGHEVLDAAL------- 67 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee-----------------eecCCCceeeeccc-------
Confidence 678899999999999999999999999999999988765432 34567888888754
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+.|+..|++|+.|..|.+||+.+|+..+.+..|.. .|+.+.|+.+...+++| .|.++++||.+. +.++.++.
T Consensus 68 s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~a-----qVNtV~fNeesSVv~SgsfD~s~r~wDCRS--~s~ePiQi 140 (307)
T KOG0316|consen 68 SSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLA-----QVNTVRFNEESSVVASGSFDSSVRLWDCRS--RSFEPIQI 140 (307)
T ss_pred cccccccccCCCCceEEEEEcccCeeeeecccccc-----eeeEEEecCcceEEEeccccceeEEEEccc--CCCCccch
Confidence 66888999999999999999999999999999987 99999999999999977 999999999996 33344444
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+ ......|.++..+. ..+++|+.||+++.||++.|.+..-.-+ .+|+++.|++||+
T Consensus 141 l----dea~D~V~Si~v~~---heIvaGS~DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~n 196 (307)
T KOG0316|consen 141 L----DEAKDGVSSIDVAE---HEIVAGSVDGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDGN 196 (307)
T ss_pred h----hhhcCceeEEEecc---cEEEeeccCCcEEEEEeecceeehhhcC--CcceeEEecCCCC
Confidence 4 34466799998855 6899999999999999999998765554 4899999999996
No 30
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.9e-28 Score=195.56 Aligned_cols=196 Identities=15% Similarity=0.163 Sum_probs=166.1
Q ss_pred eeccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 53 FRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
.....+|++.|.+++++..+ .+|+++|.|+++++|++...+.... ... -........|...|++++.
T Consensus 404 ~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~---~~~-----~~~~~t~~aHdKdIN~Vai---- 471 (775)
T KOG0319|consen 404 VAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF---PIV-----LTCRYTERAHDKDINCVAI---- 471 (775)
T ss_pred hhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc---cce-----ehhhHHHHhhcccccceEe----
Confidence 33688999999999998755 5899999999999999986221111 000 0001123456778888865
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~ 210 (279)
+|+..++|+||.|.+.++|+++......++.+|.. .|+++.|+|..+.++++ .|.+|+||.+.+. .+
T Consensus 472 ---a~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~R-----Gvw~V~Fs~~dq~laT~SgD~TvKIW~is~f----SC 539 (775)
T KOG0319|consen 472 ---APNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTR-----GVWCVSFSKNDQLLATCSGDKTVKIWSISTF----SC 539 (775)
T ss_pred ---cCCCceEEecccccceeeecccCceEEEEeeCCcc-----ceEEEEeccccceeEeccCCceEEEEEeccc----ee
Confidence 78899999999999999999999999999999987 99999999999999955 9999999999983 67
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
+.++ .||...|..+.|-. ++..|++++.||.|++|++.+++|+.++..|++.|++++-+|.+
T Consensus 540 lkT~----eGH~~aVlra~F~~-~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~ 601 (775)
T KOG0319|consen 540 LKTF----EGHTSAVLRASFIR-NGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLL 601 (775)
T ss_pred eeee----cCccceeEeeeeee-CCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCcc
Confidence 7777 89999999999999 99999999999999999999999999999999999999998865
No 31
>PTZ00421 coronin; Provisional
Probab=99.96 E-value=3.8e-27 Score=191.42 Aligned_cols=194 Identities=14% Similarity=0.198 Sum_probs=144.2
Q ss_pred ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
.+.+|.+.|++++|+| ++++|++|+.|++|++||+.++....... .. ......|...|.+++|+|.
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~---------~~-l~~L~gH~~~V~~l~f~P~--- 136 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNIS---------DP-IVHLQGHTKKVGIVSFHPS--- 136 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccC---------cc-eEEecCCCCcEEEEEeCcC---
Confidence 4679999999999999 88999999999999999998653211100 00 1123456778999988543
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~ 212 (279)
.+.+|++++.|++|++||+++++....+..|.. .|.+++|+|++.+|+++ .|+.|++||++++ . ...
T Consensus 137 ---~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~-----~V~sla~spdG~lLatgs~Dg~IrIwD~rsg-~---~v~ 204 (493)
T PTZ00421 137 ---AMNVLASAGADMVVNVWDVERGKAVEVIKCHSD-----QITSLEWNLDGSLLCTTSKDKKLNIIDPRDG-T---IVS 204 (493)
T ss_pred ---CCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-----ceEEEEEECCCCEEEEecCCCEEEEEECCCC-c---EEE
Confidence 246899999999999999999998888877765 89999999999999966 9999999999984 2 222
Q ss_pred ecccccCCCCCc-eEEEEEccCCCcEEEEEe----CCCcEEEEecCCCe-EEEEEeec-CCCEEEEEEccCCC
Q 023672 213 TLKGNKEGQAGI-MSAIAFSPTHTGMLAIGS----YSQTSAIYREDNME-LLYVLHGQ-EGGVTHVSKLSSAY 278 (279)
Q Consensus 213 ~~~~~~~~~~~~-v~~~~~sp~~~~~l~~~~----~dg~i~~wd~~~~~-~~~~~~~~-~~~v~~~~~spdg~ 278 (279)
.+ .+|.+. +..+.|.+ ++..+++++ .|+.|++||+++.. ++.....+ ...+....|+||++
T Consensus 205 tl----~~H~~~~~~~~~w~~-~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~ 272 (493)
T PTZ00421 205 SV----EAHASAKSQRCLWAK-RKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTN 272 (493)
T ss_pred EE----ecCCCCcceEEEEcC-CCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCC
Confidence 33 456543 45678999 555665543 47899999998764 44444333 34566667888875
No 32
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.6e-27 Score=181.98 Aligned_cols=201 Identities=16% Similarity=0.229 Sum_probs=165.2
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
-+.+||..+...+. .+.+|+.+|..+.|+| ++..|++|+.|+.+++||+.+... ..
T Consensus 91 ~V~vfD~k~r~iLR------~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-----------------~~ 147 (487)
T KOG0310|consen 91 HVKVFDMKSRVILR------QLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-----------------QA 147 (487)
T ss_pred cEEEeccccHHHHH------HHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-----------------EE
Confidence 57788866655554 7889999999999999 556788999999999999997532 11
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEEEec
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY 192 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (279)
....|...|.+.+|+|. ++.++++|+.||+|++||+++. ..+..+.. +. +|..+.+-|.|..++++.
T Consensus 148 ~l~~htDYVR~g~~~~~------~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~-----pVe~vl~lpsgs~iasAg 215 (487)
T KOG0310|consen 148 ELSGHTDYVRCGDISPA------NDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GC-----PVESVLALPSGSLIASAG 215 (487)
T ss_pred EecCCcceeEeeccccC------CCeEEEecCCCceEEEEEeccCCceeEEecC-CC-----ceeeEEEcCCCCEEEEcC
Confidence 34567778999988653 5679999999999999999987 55555553 33 899999999999999888
Q ss_pred CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEE
Q 023672 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272 (279)
Q Consensus 193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 272 (279)
...|++||+-++++... .. ..|...|+|+++.. ++..|++|+-|+.+++||+.+.+.+..+. ..++|.+++
T Consensus 216 Gn~vkVWDl~~G~qll~---~~----~~H~KtVTcL~l~s-~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsia 286 (487)
T KOG0310|consen 216 GNSVKVWDLTTGGQLLT---SM----FNHNKTVTCLRLAS-DSTRLLSGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIA 286 (487)
T ss_pred CCeEEEEEecCCceehh---hh----hcccceEEEEEeec-CCceEeecccccceEEEEccceEEEEeee-cccceeeEE
Confidence 89999999997643221 12 45888999999999 88999999999999999999999998888 678999999
Q ss_pred EccCCCC
Q 023672 273 KLSSAYT 279 (279)
Q Consensus 273 ~spdg~~ 279 (279)
.+||+++
T Consensus 287 vs~dd~t 293 (487)
T KOG0310|consen 287 VSPDDQT 293 (487)
T ss_pred ecCCCce
Confidence 9998863
No 33
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.1e-28 Score=190.11 Aligned_cols=204 Identities=19% Similarity=0.281 Sum_probs=172.2
Q ss_pred ceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672 31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY 110 (279)
Q Consensus 31 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 110 (279)
+....+++|+..+++-++ .+.+|.+.|.|++.+|...+++|+|.|-+|++||.+.+=. +
T Consensus 74 sDD~~IrVfnynt~ekV~------~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa------~--------- 132 (794)
T KOG0276|consen 74 SDDMQIRVFNYNTGEKVK------TFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWA------C--------- 132 (794)
T ss_pred cCCceEEEEecccceeeE------EeeccccceeeeeecCCCCeEEecCCccEEEEeeccCcee------e---------
Confidence 344477888888888777 7889999999999999999999999999999999985311 1
Q ss_pred cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEE
Q 023672 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKI 188 (279)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l 188 (279)
.....+|..-|.+++|+|. |.+.+|+++.|++|++|.+.+..+..++.+|.. .|+|+.|-+.| .+|
T Consensus 133 -~qtfeGH~HyVMqv~fnPk------D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHek-----GVN~Vdyy~~gdkpyl 200 (794)
T KOG0276|consen 133 -EQTFEGHEHYVMQVAFNPK------DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEK-----GVNCVDYYTGGDKPYL 200 (794)
T ss_pred -eeEEcCcceEEEEEEecCC------CccceeeeeccccEEEEEcCCCCCceeeecccc-----CcceEEeccCCCcceE
Confidence 1155678889999999887 677999999999999999999999999999887 99999998876 577
Q ss_pred EEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCC
Q 023672 189 FAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG 267 (279)
Q Consensus 189 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~ 267 (279)
++| .|..++|||..+. .+++++ +||...|..++|+| .-.++++|++||+++||+..+-++..++.-.-..
T Consensus 201 IsgaDD~tiKvWDyQtk----~CV~TL----eGHt~Nvs~v~fhp-~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleR 271 (794)
T KOG0276|consen 201 ISGADDLTIKVWDYQTK----SCVQTL----EGHTNNVSFVFFHP-ELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLER 271 (794)
T ss_pred EecCCCceEEEeecchH----HHHHHh----hcccccceEEEecC-CCcEEEEecCCccEEEecCcceehhhhhhcCCce
Confidence 776 8999999999983 555566 89999999999999 8999999999999999999887776666655566
Q ss_pred EEEEEEccC
Q 023672 268 VTHVSKLSS 276 (279)
Q Consensus 268 v~~~~~spd 276 (279)
|++++-.+.
T Consensus 272 vW~I~~~k~ 280 (794)
T KOG0276|consen 272 VWCIAAHKG 280 (794)
T ss_pred EEEEeecCC
Confidence 777765554
No 34
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.4e-28 Score=178.31 Aligned_cols=209 Identities=14% Similarity=0.264 Sum_probs=160.0
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccC-CCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK-DQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
.+..|++++.+.+|++||.++|||+.|.+|+|+|++..-............ ...-++......|-.+|.++.|
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~F------ 180 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDF------ 180 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceee------
Confidence 577899999999999999999999999999999997432211111111000 1112333344567778888877
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~ 212 (279)
+|...+|++|+.|++|+++|.......+.++.... ..+|.+++|+|.|.++++| .-..+++||+.+- +++.
T Consensus 181 -HPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd---~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~----Qcfv 252 (430)
T KOG0640|consen 181 -HPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQD---TEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTY----QCFV 252 (430)
T ss_pred -cchhheEEeccCCCeEEEEecccHHHHHHHHHhhc---cceeeeEeecCCCceEEEecCCCceeEEeccce----eEee
Confidence 55678999999999999999976544443332221 1289999999999999998 6689999999983 4433
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCC-CEEEEEEccCCCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEG-GVTHVSKLSSAYT 279 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~-~v~~~~~spdg~~ 279 (279)
... ....|.+.|+++.+++ .+.+.++|+.||.|+|||--+++|+.++.. |.+ .|.+..|+.+|+|
T Consensus 253 san-Pd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~ky 319 (430)
T KOG0640|consen 253 SAN-PDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKY 319 (430)
T ss_pred ecC-cccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeE
Confidence 322 3378999999999999 999999999999999999999999988763 654 7999999999986
No 35
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=6.3e-27 Score=166.30 Aligned_cols=167 Identities=16% Similarity=0.194 Sum_probs=136.0
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
+..||+++|+|+..+-+.++|+||+.|.++++||+++++.. .....+.+|..+.|
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~l------------------a~~k~~~~Vk~~~F------- 101 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQL------------------ATWKTNSPVKRVDF------- 101 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEE------------------EEeecCCeeEEEee-------
Confidence 89999999999999999999999999999999999988653 23344567888766
Q ss_pred CCCCcEEEEecC-----CCcEEEEECC-------CCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEc
Q 023672 135 DPTSCVFASTTR-----DHPIHLWDAT-------TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDV 201 (279)
Q Consensus 135 ~~~~~~l~s~~~-----d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~ 201 (279)
+++|++++.+.. .+.|.++|++ ..++...+..+.. .++..-|.|-+++|++| .||.|..||.
T Consensus 102 ~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~s-----kit~a~Wg~l~~~ii~Ghe~G~is~~da 176 (327)
T KOG0643|consen 102 SFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDS-----KITSALWGPLGETIIAGHEDGSISIYDA 176 (327)
T ss_pred ccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcc-----ceeeeeecccCCEEEEecCCCcEEEEEc
Confidence 677887777643 4579999998 3445666766665 88999999999999988 9999999999
Q ss_pred cCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~ 259 (279)
+++.. +......|...|+.++++| +..++++++.|.+-++||+++.+++.
T Consensus 177 ~~g~~-------~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl~v~K 226 (327)
T KOG0643|consen 177 RTGKE-------LVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTLEVLK 226 (327)
T ss_pred ccCce-------eeechhhhccccccccccC-CcceEEecccCccceeeeccceeeEE
Confidence 98521 1122257788999999999 99999999999999999988765443
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.4e-26 Score=162.81 Aligned_cols=203 Identities=17% Similarity=0.268 Sum_probs=159.9
Q ss_pred ceeeeeeEecCCCCcccceeeeee-ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672 31 EYTWPLIRFDVPPHRTYHFYNQFR-TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109 (279)
Q Consensus 31 ~~~~~~~~~d~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 109 (279)
.....+++|+...+..+ .+.. .-.+|+..|..++|+|.|++|++||-|.++.||.-..+....
T Consensus 34 g~Dk~vriw~~~~~~s~---~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efec------------- 97 (312)
T KOG0645|consen 34 GTDKAVRIWSTSSGDSW---TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFEC------------- 97 (312)
T ss_pred cCCceEEEEecCCCCcE---EEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeE-------------
Confidence 33446778887753332 2222 345899999999999999999999999999999877543211
Q ss_pred ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC---eeeEEEeccCccccccceeeEEECCCCC
Q 023672 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGT 186 (279)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (279)
.....+|.+.|.+++| +++|++||+|+.|..|-||.+..+ ++...+..|.. .|..+.|+|...
T Consensus 98 --v~~lEGHEnEVK~Vaw-------s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~Htq-----DVK~V~WHPt~d 163 (312)
T KOG0645|consen 98 --VATLEGHENEVKCVAW-------SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQ-----DVKHVIWHPTED 163 (312)
T ss_pred --EeeeeccccceeEEEE-------cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccc-----cccEEEEcCCcc
Confidence 1245678889999988 789999999999999999999754 46777777776 899999999999
Q ss_pred EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ec
Q 023672 187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQ 264 (279)
Q Consensus 187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~ 264 (279)
+|+++ .|.+|++|+-.. +....+..++ .+|...|.+++|+| .|..|++++.|++++||...+. +. .|
T Consensus 164 lL~S~SYDnTIk~~~~~~-dddW~c~~tl----~g~~~TVW~~~F~~-~G~rl~s~sdD~tv~Iw~~~~~-----~~~~~ 232 (312)
T KOG0645|consen 164 LLFSCSYDNTIKVYRDED-DDDWECVQTL----DGHENTVWSLAFDN-IGSRLVSCSDDGTVSIWRLYTD-----LSGMH 232 (312)
T ss_pred eeEEeccCCeEEEEeecC-CCCeeEEEEe----cCccceEEEEEecC-CCceEEEecCCcceEeeeeccC-----cchhc
Confidence 99965 999999999886 5566777777 79999999999999 8999999999999999986522 22 14
Q ss_pred CCCEEEEEEc
Q 023672 265 EGGVTHVSKL 274 (279)
Q Consensus 265 ~~~v~~~~~s 274 (279)
...+..++|.
T Consensus 233 sr~~Y~v~W~ 242 (312)
T KOG0645|consen 233 SRALYDVPWD 242 (312)
T ss_pred ccceEeeeec
Confidence 4555555555
No 37
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=7.2e-27 Score=176.22 Aligned_cols=203 Identities=20% Similarity=0.245 Sum_probs=166.6
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
++.++|.+..+.+. ++.||.-.|+.+.|+|+...+++++.|-.|+||....... ...
T Consensus 242 ~av~~d~~s~q~l~------~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~-----------------~~~ 298 (506)
T KOG0289|consen 242 TAVLFDKPSNQILA------TLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSE-----------------PTS 298 (506)
T ss_pred ceEEEecchhhhhh------hccCcceEEEEEEeccchhheeecCCcceEEeeccccccC-----------------ccc
Confidence 44555555555554 8999999999999999999999999999999999874321 114
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (279)
...|.++|+.+.. +|.|.||++++.|++..+.|++++..+........ .-.+++.+|+|||.++.+| .|
T Consensus 299 ~~~h~~~V~~ls~-------h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s---~v~~ts~~fHpDgLifgtgt~d 368 (506)
T KOG0289|consen 299 SRPHEEPVTGLSL-------HPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS---DVEYTSAAFHPDGLIFGTGTPD 368 (506)
T ss_pred cccccccceeeee-------ccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc---cceeEEeeEcCCceEEeccCCC
Confidence 4556678888865 77899999999999999999999988777654321 1268899999999999988 99
Q ss_pred CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC-CCEEEEE
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVS 272 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~ 272 (279)
+.+++||+..+ .....+.+|.++|..++|+. ||.+|+++++|+.|++||+|..+...++...+ .+|.++.
T Consensus 369 ~~vkiwdlks~--------~~~a~Fpght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~ 439 (506)
T KOG0289|consen 369 GVVKIWDLKSQ--------TNVAKFPGHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLS 439 (506)
T ss_pred ceEEEEEcCCc--------cccccCCCCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEE
Confidence 99999999974 23334479999999999999 99999999999999999999988877777543 3799999
Q ss_pred EccCCCC
Q 023672 273 KLSSAYT 279 (279)
Q Consensus 273 ~spdg~~ 279 (279)
|.+.|+|
T Consensus 440 fD~SGt~ 446 (506)
T KOG0289|consen 440 FDQSGTY 446 (506)
T ss_pred EcCCCCe
Confidence 9999876
No 38
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=6.3e-29 Score=182.79 Aligned_cols=194 Identities=16% Similarity=0.236 Sum_probs=161.9
Q ss_pred cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672 30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109 (279)
Q Consensus 30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 109 (279)
+.+.-.+.+||..+..+.. .+.||++.|.|+.|.. +.+++||.|.+|+|||+++++...
T Consensus 213 GlrDnTikiWD~n~~~c~~------~L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~------------- 271 (499)
T KOG0281|consen 213 GLRDNTIKIWDKNSLECLK------ILTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN------------- 271 (499)
T ss_pred ccccCceEEeccccHHHHH------hhhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh-------------
Confidence 3444567889988887776 8999999999999974 589999999999999999886533
Q ss_pred ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe---eeEEEeccCccccccceeeEEECCCCC
Q 023672 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGT 186 (279)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (279)
...+|.+.|..+.| +..++++++.|.++.+||+.+.. +...+.+|.. .|..+.|+. +
T Consensus 272 ----tlihHceaVLhlrf---------~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrA-----aVNvVdfd~--k 331 (499)
T KOG0281|consen 272 ----TLIHHCEAVLHLRF---------SNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRA-----AVNVVDFDD--K 331 (499)
T ss_pred ----HHhhhcceeEEEEE---------eCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhh-----heeeecccc--c
Confidence 45678889999988 45599999999999999998764 2344556665 888998865 4
Q ss_pred EEEE-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672 187 KIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (279)
Q Consensus 187 ~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 265 (279)
++++ +.|.+|++|++.+. +.+.++ .+|...|.|+.+ ++.++++|+.|.+|++||+..|.++..+++|+
T Consensus 332 yIVsASgDRTikvW~~st~----efvRtl----~gHkRGIAClQY---r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 332 YIVSASGDRTIKVWSTSTC----EFVRTL----NGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred eEEEecCCceEEEEeccce----eeehhh----hcccccceehhc---cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 8885 49999999999984 444444 899999998887 67899999999999999999999999999999
Q ss_pred CCEEEEEEcc
Q 023672 266 GGVTHVSKLS 275 (279)
Q Consensus 266 ~~v~~~~~sp 275 (279)
.-|+++.|..
T Consensus 401 eLvRciRFd~ 410 (499)
T KOG0281|consen 401 ELVRCIRFDN 410 (499)
T ss_pred HhhhheeecC
Confidence 9999999864
No 39
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=2e-27 Score=168.22 Aligned_cols=198 Identities=18% Similarity=0.298 Sum_probs=160.6
Q ss_pred eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
+...+|...|.+++|+-+|..|++|+.|+++++|+++....... ....+|+..|-.++|.|.
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~---------------~~~~gh~~svdql~w~~~--- 75 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE---------------LVYRGHTDSVDQLCWDPK--- 75 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh---------------hcccCCCcchhhheeCCC---
Confidence 36778999999999999999999999999999999986532211 133456778999999776
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCce----
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF---- 208 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~---- 208 (279)
+...+++++.|.+|++||++++++......... . .-+.|+|+|.+++++ .|..|...|.++.....
T Consensus 76 ---~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~e-----n-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~ 146 (313)
T KOG1407|consen 76 ---HPDLFATASGDKTIRIWDIRSGKCTARIETKGE-----N-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF 146 (313)
T ss_pred ---CCcceEEecCCceEEEEEeccCcEEEEeeccCc-----c-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc
Confidence 344899999999999999999999888776553 3 358999999999977 89999999988621000
Q ss_pred -------------------------eee--e--ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672 209 -------------------------EKY--S--TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259 (279)
Q Consensus 209 -------------------------~~~--~--~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~ 259 (279)
+.+ . .......+|.....|+.|+| +|.++|+|+.|-.+.+||+...-|+.
T Consensus 147 ~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 147 KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred cceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECC-CCceEeeccccceeeccChhHhhhhe
Confidence 000 0 01112368899999999999 99999999999999999999999999
Q ss_pred EEeecCCCEEEEEEccCCCC
Q 023672 260 VLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 260 ~~~~~~~~v~~~~~spdg~~ 279 (279)
.+..++-+|+.+.||.||++
T Consensus 226 ~isRldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 226 CISRLDWPVRTLSFSHDGRM 245 (313)
T ss_pred eeccccCceEEEEeccCcce
Confidence 99999999999999999986
No 40
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-27 Score=166.25 Aligned_cols=183 Identities=21% Similarity=0.337 Sum_probs=151.2
Q ss_pred CCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 60 NNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 60 ~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
.+.+..++|+++. +.+++++.||+++|||+..... ++ .....|...|+++.|++. .+
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---------------Pi-~~~kEH~~EV~Svdwn~~------~r 117 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---------------PI-HKFKEHKREVYSVDWNTV------RR 117 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---------------ch-hHHHhhhhheEEeccccc------cc
Confidence 4679999999954 5788999999999999653211 11 133457779999999764 56
Q ss_pred cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEE-ecCCeEEEEEccCCCCceeeeeeccc
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
..+++++.|++|++|+...++.+.++.++.. .|+...|+|.. +++++ +.|+.+++||++.+++... +
T Consensus 118 ~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~-----~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~----i-- 186 (311)
T KOG0277|consen 118 RIFLTSSWDGTIKLWDPNRPNSVQTFNGHNS-----CIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS----I-- 186 (311)
T ss_pred eeEEeeccCCceEeecCCCCcceEeecCCcc-----EEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE----E--
Confidence 6888889999999999999999999998886 89999999974 55564 4999999999998654332 3
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEEEccCC
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~spdg 277 (279)
..|...+.++.|+.-+..+|+||+.|+.|+.||+++. .++..+.+|.-.|+.++|||.-
T Consensus 187 --~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~ 246 (311)
T KOG0277|consen 187 --EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHH 246 (311)
T ss_pred --EeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcch
Confidence 5788899999999988899999999999999999976 4788999999999999999963
No 41
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=1.1e-28 Score=180.08 Aligned_cols=189 Identities=17% Similarity=0.299 Sum_probs=155.7
Q ss_pred CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (279)
|....+.|..|+|||++|++|+.||-|.+|+..+++...+..... .+ .......+|.+++| +.|
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA----qd-----~fMMmd~aVlci~F-------SRD 274 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA----QD-----NFMMMDDAVLCISF-------SRD 274 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh----hc-----ceeecccceEEEee-------ccc
Confidence 456679999999999999999999999999999987654432211 11 22334568888877 788
Q ss_pred CcEEEEecCCCcEEEEECCCCeeeEEEe-ccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecc
Q 023672 138 SCVFASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~ 215 (279)
...+++|+.||.|++|.+++|.+++.+. .|.. .|+|+.|+.|+..++++ .|.++++.-++.+ +++..+
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtk-----Gvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG----K~LKEf- 344 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTK-----GVTCLSFSRDNSQILSASFDQTVRIHGLKSG----KCLKEF- 344 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhcc-----CeeEEEEccCcchhhcccccceEEEeccccc----hhHHHh-
Confidence 9999999999999999999999999887 4554 89999999999888855 9999999999984 333344
Q ss_pred cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec--CCCEEEEEEccC
Q 023672 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ--EGGVTHVSKLSS 276 (279)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~--~~~v~~~~~spd 276 (279)
.+|...|+.+.|++ +|..+++++.||+|++|+..+.+|+.+++.. +-+|.++..-|.
T Consensus 345 ---rGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PK 403 (508)
T KOG0275|consen 345 ---RGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPK 403 (508)
T ss_pred ---cCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCC
Confidence 79999999999999 9999999999999999999999999888753 346777766654
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=2.1e-27 Score=175.22 Aligned_cols=200 Identities=20% Similarity=0.261 Sum_probs=171.0
Q ss_pred eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
--+.+||+.++++.. ++.||-..|..+++|+-..||++++.|+.|+.||++..+....
T Consensus 173 rtikIwDlatg~Lkl------tltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~---------------- 230 (460)
T KOG0285|consen 173 RTIKIWDLATGQLKL------TLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRH---------------- 230 (460)
T ss_pred ceeEEEEcccCeEEE------eecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHH----------------
Confidence 356799999999876 8999999999999999999999999999999999997654322
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (279)
..+|-..|+++.. .|.-..|++|+.|.++++||+++...+..+.+|.. +|..+.+.|..-.+++| .
T Consensus 231 -YhGHlS~V~~L~l-------hPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~-----~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 231 -YHGHLSGVYCLDL-------HPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTN-----PVASVMCQPTDPQVITGSH 297 (460)
T ss_pred -hccccceeEEEec-------cccceeEEecCCcceEEEeeecccceEEEecCCCC-----cceeEEeecCCCceEEecC
Confidence 2344457888866 55667999999999999999999999999999987 99999999877666655 9
Q ss_pred CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEE
Q 023672 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272 (279)
Q Consensus 193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 272 (279)
|++|++||++.+ +...++ ..|...|.+++.+| ....+++++.|. |+-|++..|+.+..+.+|+.-|.+++
T Consensus 298 D~tvrlWDl~ag----kt~~tl----t~hkksvral~lhP-~e~~fASas~dn-ik~w~~p~g~f~~nlsgh~~iintl~ 367 (460)
T KOG0285|consen 298 DSTVRLWDLRAG----KTMITL----THHKKSVRALCLHP-KENLFASASPDN-IKQWKLPEGEFLQNLSGHNAIINTLS 367 (460)
T ss_pred CceEEEeeeccC----ceeEee----ecccceeeEEecCC-chhhhhccCCcc-ceeccCCccchhhccccccceeeeee
Confidence 999999999985 333334 57888999999999 888999998775 89999999999999999999999999
Q ss_pred EccCCC
Q 023672 273 KLSSAY 278 (279)
Q Consensus 273 ~spdg~ 278 (279)
...||-
T Consensus 368 ~nsD~v 373 (460)
T KOG0285|consen 368 VNSDGV 373 (460)
T ss_pred eccCce
Confidence 998874
No 43
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=3.9e-27 Score=179.00 Aligned_cols=215 Identities=17% Similarity=0.215 Sum_probs=171.3
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+++|.+.++.++. .+.+|-..|+|+.|+-||.+|+||+.||.|.+|.+..-.... ..........
T Consensus 104 ~lYlWelssG~LL~------v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~--------~~~~~~p~~~ 169 (476)
T KOG0646|consen 104 NLYLWELSSGILLN------VLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD--------NDHSVKPLHI 169 (476)
T ss_pred cEEEEEeccccHHH------HHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc--------cCCCccceee
Confidence 78999999999988 678999999999999999999999999999999986421110 0111222235
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (279)
...|.-+|+++...+ .+....+++++.|.++++||+..+..+.++..+. .+.+++.+|-+..+++| .+
T Consensus 170 f~~HtlsITDl~ig~-----Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~------si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 170 FSDHTLSITDLQIGS-----GGTNARLYTASEDRTIKLWDLSLGVLLLTITFPS------SIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred eccCcceeEEEEecC-----CCccceEEEecCCceEEEEEeccceeeEEEecCC------cceeEEEcccccEEEecCCc
Confidence 566778888887533 3345689999999999999999999998888776 78999999999999988 99
Q ss_pred CeEEEEEccCCC--------CceeeeeecccccCCCCC--ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672 194 KSVRVFDVHRPG--------RDFEKYSTLKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 194 ~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
|.|.+.++.... +......+-...+.+|.+ +|+|++.+- +|.+|++|+.||.++|||+.+.++++++..
T Consensus 239 G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 239 GKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred ceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 999999987532 001111122233368887 999999999 999999999999999999999999988886
Q ss_pred cCCCEEEEEEcc
Q 023672 264 QEGGVTHVSKLS 275 (279)
Q Consensus 264 ~~~~v~~~~~sp 275 (279)
..++|+.+.+.|
T Consensus 318 ~kgpVtnL~i~~ 329 (476)
T KOG0646|consen 318 SKGPVTNLQINP 329 (476)
T ss_pred hccccceeEeec
Confidence 678888888844
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.95 E-value=1.1e-27 Score=168.81 Aligned_cols=205 Identities=16% Similarity=0.219 Sum_probs=168.2
Q ss_pred cccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCC
Q 023672 28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107 (279)
Q Consensus 28 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 107 (279)
+.....+...+||..++.-++. ..|..-|.+++|+.|.++|+||+.+..++|||++......
T Consensus 75 asaaadftakvw~a~tgdelhs-------f~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App----------- 136 (334)
T KOG0278|consen 75 ASAAADFTAKVWDAVTGDELHS-------FEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPP----------- 136 (334)
T ss_pred hhhcccchhhhhhhhhhhhhhh-------hhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCc-----------
Confidence 3344556677899998888763 3488889999999999999999999999999998643211
Q ss_pred CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCE
Q 023672 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187 (279)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (279)
.-...|.+.|..+.|+ ...+.|++++.|++||+||.+++..++.+.... +|.++.++++|++
T Consensus 137 -----~E~~ghtg~Ir~v~wc-------~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s------~VtSlEvs~dG~i 198 (334)
T KOG0278|consen 137 -----KEISGHTGGIRTVLWC-------HEDKCILSSADDKTVRLWDHRTGTEVQSLEFNS------PVTSLEVSQDGRI 198 (334)
T ss_pred -----hhhcCCCCcceeEEEe-------ccCceEEeeccCCceEEEEeccCcEEEEEecCC------CCcceeeccCCCE
Confidence 1234566788888884 245577788999999999999999999998776 8999999999999
Q ss_pred EEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE-eecCC
Q 023672 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-HGQEG 266 (279)
Q Consensus 188 l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-~~~~~ 266 (279)
|..+..+.|.+||..+- ..+... .-...|.+..++| +..++++|++|..++.||..+++.+..+ ++|-+
T Consensus 199 lTia~gssV~Fwdaksf----~~lKs~-----k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~g 268 (334)
T KOG0278|consen 199 LTIAYGSSVKFWDAKSF----GLLKSY-----KMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFG 268 (334)
T ss_pred EEEecCceeEEeccccc----cceeec-----cCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCC
Confidence 99999999999999872 222222 1234688999999 8899999999999999999999998886 89999
Q ss_pred CEEEEEEccCCC
Q 023672 267 GVTHVSKLSSAY 278 (279)
Q Consensus 267 ~v~~~~~spdg~ 278 (279)
+|.++.|+|||.
T Consensus 269 pVhcVrFSPdGE 280 (334)
T KOG0278|consen 269 PVHCVRFSPDGE 280 (334)
T ss_pred ceEEEEECCCCc
Confidence 999999999984
No 45
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1e-26 Score=162.52 Aligned_cols=204 Identities=13% Similarity=0.118 Sum_probs=161.4
Q ss_pred hcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCC
Q 023672 27 ENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKD 106 (279)
Q Consensus 27 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 106 (279)
.+.......+.+||+.+++..+ .+.+|.+.|+.++|+.+...+++|+-|.++++||.+.....
T Consensus 74 f~s~GgDk~v~vwDV~TGkv~R------r~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~e----------- 136 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGKVDR------RFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFE----------- 136 (307)
T ss_pred cccCCCCceEEEEEcccCeeee------ecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCC-----------
Confidence 3344455578999999999987 78899999999999999999999999999999999864321
Q ss_pred CCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC
Q 023672 107 QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT 186 (279)
Q Consensus 107 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (279)
++..+ ......|.++.. .+..|+.|+.||+++.||++.|+....+-.+ +|++++|+++++
T Consensus 137 ---PiQil-dea~D~V~Si~v---------~~heIvaGS~DGtvRtydiR~G~l~sDy~g~-------pit~vs~s~d~n 196 (307)
T KOG0316|consen 137 ---PIQIL-DEAKDGVSSIDV---------AEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH-------PITSVSFSKDGN 196 (307)
T ss_pred ---ccchh-hhhcCceeEEEe---------cccEEEeeccCCcEEEEEeecceeehhhcCC-------cceeEEecCCCC
Confidence 11111 122235655544 5668999999999999999999876554432 889999999999
Q ss_pred EEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCc--eEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672 187 KIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI--MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 187 ~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
..+++ .|+++++.|-.++ +.+... .+|.+. -..++++. ....+++|++||.|++||+.....+..+..
T Consensus 197 c~La~~l~stlrLlDk~tG----klL~sY----kGhkn~eykldc~l~q-sdthV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 197 CSLASSLDSTLRLLDKETG----KLLKSY----KGHKNMEYKLDCCLNQ-SDTHVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred EEEEeeccceeeecccchh----HHHHHh----cccccceeeeeeeecc-cceeEEeccCCceEEEEEeccceeeeeecc
Confidence 98866 9999999999984 222233 566543 34567777 778999999999999999999999999998
Q ss_pred cCCC-EEEEEEccC
Q 023672 264 QEGG-VTHVSKLSS 276 (279)
Q Consensus 264 ~~~~-v~~~~~spd 276 (279)
+... |.+++++|.
T Consensus 268 ~~~v~v~dl~~hp~ 281 (307)
T KOG0316|consen 268 VSTVIVTDLSCHPT 281 (307)
T ss_pred CCceeEEeeecccC
Confidence 8877 899999985
No 46
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=1.4e-25 Score=183.35 Aligned_cols=178 Identities=15% Similarity=0.231 Sum_probs=130.4
Q ss_pred eccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 54 RTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
..+.+|.+.|.+++|+|+ +.+|++|+.||+|+|||+.++...... . ... ......|...|.+++|
T Consensus 68 ~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~--i------~~p-~~~L~gH~~~V~sVaf----- 133 (568)
T PTZ00420 68 IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE--I------KDP-QCILKGHKKKISIIDW----- 133 (568)
T ss_pred EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc--c------ccc-eEEeecCCCcEEEEEE-----
Confidence 367899999999999996 789999999999999999864221000 0 000 0123456778999988
Q ss_pred ccCCCCc-EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672 133 ASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 133 ~~~~~~~-~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~ 210 (279)
+|++. ++++++.|++|++||+++++....+..+ . .|.+++|+|+|.+|+++ .|+.|++||++++ ..
T Consensus 134 --~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-~-----~V~SlswspdG~lLat~s~D~~IrIwD~Rsg----~~ 201 (568)
T PTZ00420 134 --NPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-K-----KLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQ----EI 201 (568)
T ss_pred --CCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-C-----cEEEEEECCCCCEEEEEecCCEEEEEECCCC----cE
Confidence 45555 4678999999999999999877666532 2 78999999999999966 8999999999984 22
Q ss_pred eeecccccCCCCCceEE-----EEEccCCCcEEEEEeCCC----cEEEEecCC-CeEEEEEe
Q 023672 211 YSTLKGNKEGQAGIMSA-----IAFSPTHTGMLAIGSYSQ----TSAIYREDN-MELLYVLH 262 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~-----~~~sp~~~~~l~~~~~dg----~i~~wd~~~-~~~~~~~~ 262 (279)
...+ .+|.+.+.+ ..|++ ++.+|++++.|+ .|+|||+++ ++++..+.
T Consensus 202 i~tl----~gH~g~~~s~~v~~~~fs~-d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ 258 (568)
T PTZ00420 202 ASSF----HIHDGGKNTKNIWIDGLGG-DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS 258 (568)
T ss_pred EEEE----ecccCCceeEEEEeeeEcC-CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE
Confidence 2333 566655433 34568 777888877664 799999995 56665554
No 47
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=4e-27 Score=176.43 Aligned_cols=205 Identities=19% Similarity=0.209 Sum_probs=162.0
Q ss_pred ceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672 31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY 110 (279)
Q Consensus 31 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 110 (279)
.+....++|++...+..+ ++.||++.|+++.|......+++|+.|.+|++||+....+....
T Consensus 238 s~d~~~r~Wnvd~~r~~~------TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~------------ 299 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRH------TLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTV------------ 299 (459)
T ss_pred cCCCceeeeeccchhhhh------hhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccc------------
Confidence 334467788988888887 89999999999999987777999999999999999875442211
Q ss_pred cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (279)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (279)
..+..+.++.. ....+++|-.|++|++||+++..+....+.++ .|+++..++++..+.+
T Consensus 300 ------l~~S~cnDI~~---------~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg------~vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 300 ------LPGSQCNDIVC---------SISDVISGHFDKKVRFWDIRSADKTRSVPLGG------RVTSLDLSMDGLELLS 358 (459)
T ss_pred ------cccccccceEe---------cceeeeecccccceEEEeccCCceeeEeecCc------ceeeEeeccCCeEEee
Confidence 11223444433 23478899999999999999999999988877 8999999999988885
Q ss_pred e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC--C
Q 023672 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG--G 267 (279)
Q Consensus 191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~ 267 (279)
+ .|..+.++|+++. . ..........+.++ ..+.++||| ++.++++|+.||.|+||++.++++...+..... .
T Consensus 359 ssRDdtl~viDlRt~-e-I~~~~sA~g~k~as--DwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~a 433 (459)
T KOG0288|consen 359 SSRDDTLKVIDLRTK-E-IRQTFSAEGFKCAS--DWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAA 433 (459)
T ss_pred ecCCCceeeeecccc-c-EEEEeecccccccc--ccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcc
Confidence 5 9999999999973 1 12112222222333 488999999 999999999999999999999999988886554 5
Q ss_pred EEEEEEccCCCC
Q 023672 268 VTHVSKLSSAYT 279 (279)
Q Consensus 268 v~~~~~spdg~~ 279 (279)
|++++|+|.|.+
T Consensus 434 I~s~~W~~sG~~ 445 (459)
T KOG0288|consen 434 ITSLSWNPSGSG 445 (459)
T ss_pred eEEEEEcCCCch
Confidence 999999999864
No 48
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.6e-27 Score=168.18 Aligned_cols=201 Identities=20% Similarity=0.297 Sum_probs=158.0
Q ss_pred eeeEecCCC-CcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 35 PLIRFDVPP-HRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 35 ~~~~~d~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
.+++||+.. ..+++ .++.|...|.++.|++ +++.++++|.|++|++|+...+....
T Consensus 84 SLrl~d~~~~s~Pi~------~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---------------- 141 (311)
T KOG0277|consen 84 SLRLFDLTMPSKPIH------KFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---------------- 141 (311)
T ss_pred eEEEeccCCCCcchh------HHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE----------------
Confidence 456677432 23333 6778999999999999 66678899999999999998654322
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG 191 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 191 (279)
...+|..-|+...|+|. ..+.+++++.|+++++||++.......+..|.. .+.++.|+.-. +.+++|
T Consensus 142 -Tf~gh~~~Iy~a~~sp~------~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~-----Eil~cdw~ky~~~vl~Tg 209 (311)
T KOG0277|consen 142 -TFNGHNSCIYQAAFSPH------IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS-----EILCCDWSKYNHNVLATG 209 (311)
T ss_pred -eecCCccEEEEEecCCC------CCCeEEEccCCceEEEEEecCCCceeEEEeccc-----eeEeecccccCCcEEEec
Confidence 24457778999999887 455999999999999999987544444777775 88999999865 455566
Q ss_pred -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEE
Q 023672 192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVT 269 (279)
Q Consensus 192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~ 269 (279)
.|+.|+.||++.-..++. .+ .+|..+|..++|||....+|++++.|-+++|||.... .++.+...|+.-|.
T Consensus 210 ~vd~~vr~wDir~~r~pl~---eL----~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~ 282 (311)
T KOG0277|consen 210 GVDNLVRGWDIRNLRTPLF---EL----NGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVC 282 (311)
T ss_pred CCCceEEEEehhhccccce---ee----cCCceEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEe
Confidence 999999999997433322 22 7999999999999977889999999999999998744 45677778888899
Q ss_pred EEEEccC
Q 023672 270 HVSKLSS 276 (279)
Q Consensus 270 ~~~~spd 276 (279)
++.||+-
T Consensus 283 g~Dws~~ 289 (311)
T KOG0277|consen 283 GLDWSLF 289 (311)
T ss_pred ccccccc
Confidence 9998863
No 49
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.3e-27 Score=175.29 Aligned_cols=196 Identities=19% Similarity=0.256 Sum_probs=144.8
Q ss_pred eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
....++.+|..+|.-+.||||.++|++|+.|..+.+||+.++..... +...++..+.+++|
T Consensus 260 kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~----------------y~~~~~~S~~sc~W--- 320 (519)
T KOG0293|consen 260 KLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHL----------------YPSGLGFSVSSCAW--- 320 (519)
T ss_pred eeeeeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhh----------------cccCcCCCcceeEE---
Confidence 34558999999999999999999999999999999999998755322 11123456677777
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCe----------eeEEEe------------ccC--------------cccccc
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYR------------AYD--------------AVDEIT 174 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~----------~~~~~~------------~~~--------------~~~~~~ 174 (279)
.|||..+++|+.|++|..||++... .+..+. .+. -.....
T Consensus 321 ----~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~ 396 (519)
T KOG0293|consen 321 ----CPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ 396 (519)
T ss_pred ----ccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC
Confidence 4566677777777777777765210 000000 000 001223
Q ss_pred ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCC--ceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
+|++++++.+++++++. .+..+++||+..+ ..+..+ .||.. .+..-||.-.+..++++|++|+.|+||+
T Consensus 397 ~its~~iS~d~k~~LvnL~~qei~LWDl~e~----~lv~kY----~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWh 468 (519)
T KOG0293|consen 397 PITSFSISKDGKLALVNLQDQEIHLWDLEEN----KLVRKY----FGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWH 468 (519)
T ss_pred ceeEEEEcCCCcEEEEEcccCeeEEeecchh----hHHHHh----hcccccceEEEeccCCCCcceEEecCCCceEEEEE
Confidence 89999999999999988 9999999999863 222222 45543 4556678764668999999999999999
Q ss_pred cCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 252 EDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 252 ~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
..+++++.++.+|...|++++|+|-.
T Consensus 469 r~sgkll~~LsGHs~~vNcVswNP~~ 494 (519)
T KOG0293|consen 469 RISGKLLAVLSGHSKTVNCVSWNPAD 494 (519)
T ss_pred ccCCceeEeecCCcceeeEEecCCCC
Confidence 99999999999999999999999964
No 50
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.95 E-value=7.3e-28 Score=183.64 Aligned_cols=190 Identities=15% Similarity=0.243 Sum_probs=157.9
Q ss_pred eeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 52 QFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
...+..||+..|+++.|.| .+.+|++++.|+.|+||++-..+ .......+|..+|.+++|
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------~~lrtf~gH~k~Vrd~~~--- 266 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------RCLRTFKGHRKPVRDASF--- 266 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------ceehhhhcchhhhhhhhc---
Confidence 3447899999999999999 88999999999999999997421 111255678889999988
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe-cCCeEEEEEccCCCCce
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDF 208 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~ 208 (279)
+++|..+++++.|+.|++||+++|+++..+.... .++|+.|+|++ +.+++| .|+.|+.||+|++
T Consensus 267 ----s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~------~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~---- 332 (503)
T KOG0282|consen 267 ----NNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK------VPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG---- 332 (503)
T ss_pred ----cccCCeeeeeecceeeeeeccccceEEEEEecCC------CceeeecCCCCCcEEEEecCCCcEEEEeccch----
Confidence 7789999999999999999999999999998766 78999999998 555677 9999999999995
Q ss_pred eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccCCCC
Q 023672 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSSAYT 279 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spdg~~ 279 (279)
+.++.+ ..|-+.|..+.|-+ ++..+++.++|++++||+.+.+.++..+.. +.....++..+|+|.+
T Consensus 333 kvvqeY----d~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~ 399 (503)
T KOG0282|consen 333 KVVQEY----DRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKW 399 (503)
T ss_pred HHHHHH----HhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCe
Confidence 333333 67888999999999 999999999999999999998877654332 2335668888888764
No 51
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=168.03 Aligned_cols=248 Identities=44% Similarity=0.755 Sum_probs=196.6
Q ss_pred HHhcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccccc
Q 023672 25 AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA 104 (279)
Q Consensus 25 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 104 (279)
..+......|+ +.|...+.........+.+.. ......++.|+|||..|++-+.|..+.+|++...-........
T Consensus 16 ~~ede~~~s~n-~~y~qg~~~l~g~~~~~stt~-p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~--- 90 (406)
T KOG2919|consen 16 DDEDEKKKSWN-FGYVQGPINLGGNVIAFSTTK-PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGP--- 90 (406)
T ss_pred CcccchhccCc-cceeecceeccCceEEeccCC-chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCc---
Confidence 33444556666 555554444433333332222 4566788999999999999999999999999754322211100
Q ss_pred CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC
Q 023672 105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (279)
..-.....+....+..|++.+|.+.+....|+..++++.+.+..|++||.-+|+....+......+......+++|+||
T Consensus 91 -~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~D 169 (406)
T KOG2919|consen 91 -LNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPD 169 (406)
T ss_pred -cccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCC
Confidence 1112334466678889999999999999999999999999999999999999999999988877766667889999999
Q ss_pred CCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672 185 GTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 185 ~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
|..|++|....|++||+..+++......++.....+..+-+.+++|+|.+...++.|+....+-||.-....++..+-+|
T Consensus 170 GeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh 249 (406)
T KOG2919|consen 170 GEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGH 249 (406)
T ss_pred CCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeeccc
Confidence 99999999999999999766777777666665556778889999999977789999999999999999999999999999
Q ss_pred CCCEEEEEEccCCC
Q 023672 265 EGGVTHVSKLSSAY 278 (279)
Q Consensus 265 ~~~v~~~~~spdg~ 278 (279)
.++|+.+.|++||.
T Consensus 250 ~gGvThL~~~edGn 263 (406)
T KOG2919|consen 250 GGGVTHLQWCEDGN 263 (406)
T ss_pred CCCeeeEEeccCcC
Confidence 99999999999985
No 52
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=1.7e-25 Score=172.72 Aligned_cols=186 Identities=25% Similarity=0.348 Sum_probs=155.6
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+.+|.+.|++++|+|++++|++++.||.|++|++.++... .....+...+..+.|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~-----------------~~~~~~~~~i~~~~~------- 59 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELL-----------------RTLKGHTGPVRDVAA------- 59 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcE-----------------EEEecCCcceeEEEE-------
Confidence 56789999999999999999999999999999999865321 122334456667766
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+++++.+++++.++.|++||+.+++....+..+.. .+.++.|+|++.+++++ .++.+++||+++. +....
T Consensus 60 ~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~ 130 (289)
T cd00200 60 SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-----YVSSVAFSPDGRILSSSSRDKTIKVWDVETG----KCLTT 130 (289)
T ss_pred CCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCC-----cEEEEEEcCCCCEEEEecCCCeEEEEECCCc----EEEEE
Confidence 66778999999999999999998877777776654 78999999998888877 5999999999863 22223
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+ ..|...+.+++|+| ++.++++++.|+.|++||+++++++..+..|...|.+++|+|+|+
T Consensus 131 ~----~~~~~~i~~~~~~~-~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~ 190 (289)
T cd00200 131 L----RGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE 190 (289)
T ss_pred e----ccCCCcEEEEEEcC-cCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcC
Confidence 3 46778899999999 788898888899999999999999999999998999999999984
No 53
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.95 E-value=1.7e-25 Score=172.62 Aligned_cols=228 Identities=20% Similarity=0.256 Sum_probs=164.5
Q ss_pred eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc-----------
Q 023672 34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS----------- 102 (279)
Q Consensus 34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~----------- 102 (279)
-.+++||-.++..+..+. .-.+|++.|.+++|+||++.|+|++.|.+++|||+.+..+........
T Consensus 212 gki~iyDGktge~vg~l~---~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lW 288 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELE---DSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLW 288 (603)
T ss_pred ccEEEEcCCCccEEEEec---CCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEE
Confidence 367788888888765322 356999999999999999999999999999999999876532221110
Q ss_pred ---------------ccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeE-----
Q 023672 103 ---------------LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC----- 162 (279)
Q Consensus 103 ---------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~----- 162 (279)
.....+..+.....+|...|+++. .++++.+|++|+.||.|.-|+..++..-+
T Consensus 289 qkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLt-------v~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~ 361 (603)
T KOG0318|consen 289 QKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALT-------VSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKG 361 (603)
T ss_pred eCCeEEEEEcCcEEEEecccCCChhheecccccceeEEE-------EcCCCCEEEeeccCceEEEEecCCcccccccccc
Confidence 000111113334445666666664 48889999999999999999997653211
Q ss_pred ------EEeccCcc-----------------------------------------------------------------c
Q 023672 163 ------TYRAYDAV-----------------------------------------------------------------D 171 (279)
Q Consensus 163 ------~~~~~~~~-----------------------------------------------------------------~ 171 (279)
.+...... .
T Consensus 362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~ 441 (603)
T KOG0318|consen 362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIP 441 (603)
T ss_pred ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeec
Confidence 11100000 0
Q ss_pred cccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672 172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 250 (279)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w 250 (279)
-.....+++++|++..+++| .|+.|+||.+.... ..+.. .. ..|.++|+++++|| ++.+|++|...+.+.+|
T Consensus 442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~-l~ee~-~~----~~h~a~iT~vaySp-d~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDE-LKEEA-KL----LEHRAAITDVAYSP-DGAYLAAGDASRKVVLY 514 (603)
T ss_pred cccccceEEEcCCCCEEEEecccceEEEEEecCCc-cccee-ee----ecccCCceEEEECC-CCcEEEEeccCCcEEEE
Confidence 01134578899999999976 99999999998632 12221 11 58899999999999 99999999999999999
Q ss_pred ecCCCeEE-EEEeecCCCEEEEEEccCCC
Q 023672 251 REDNMELL-YVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 251 d~~~~~~~-~~~~~~~~~v~~~~~spdg~ 278 (279)
|+.+.+.. ..+.-|...|.+++|+|+.+
T Consensus 515 d~~s~~~~~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 515 DVASREVKTNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred EcccCceecceeeeeeeeEEEEEeCCCce
Confidence 99988764 34455999999999999975
No 54
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.3e-27 Score=181.74 Aligned_cols=212 Identities=17% Similarity=0.239 Sum_probs=149.5
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccc------------ccccccC-----------------
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV------------NACSLAK----------------- 105 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~----------------- 105 (279)
.+.+|+..|.++++.|.|.+|++|+.|-+|++||+......... +......
T Consensus 162 ~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~ 241 (641)
T KOG0772|consen 162 QLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLL 241 (641)
T ss_pred eccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEE
Confidence 68889999999999999999999999999999999754321000 0000000
Q ss_pred -----------CCCccccee--eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccc
Q 023672 106 -----------DQDSYEASL--VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVD 171 (279)
Q Consensus 106 -----------~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~ 171 (279)
..+.++..+ .-+|...+++.+|+|. +...+++++.||++++||+...+ .+..++.....+
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~------~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g 315 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPD------NKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG 315 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccC------cccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence 011111111 1133345667777665 45579999999999999998653 344554443333
Q ss_pred cccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCC--ceEEEEEccCCCcEEEEEeCCCcEE
Q 023672 172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG--IMSAIAFSPTHTGMLAIGSYSQTSA 248 (279)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~sp~~~~~l~~~~~dg~i~ 248 (279)
..-.++.++|+|+++.|++| .||.|.+|+..... .. .......+|.. .|+|+.||+ +|++|++-+.|++++
T Consensus 316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~--v~---p~~~vk~AH~~g~~Itsi~FS~-dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRT--VR---PVMKVKDAHLPGQDITSISFSY-DGNYLLSRGFDDTLK 389 (641)
T ss_pred cccCceeeecCCCcchhhhcccCCceeeeecCCcc--cc---cceEeeeccCCCCceeEEEecc-ccchhhhccCCCcee
Confidence 44478999999999999977 99999999986421 11 11122256766 899999999 999999999999999
Q ss_pred EEecCCC-eEEEEEeecC--CCEEEEEEccCCC
Q 023672 249 IYREDNM-ELLYVLHGQE--GGVTHVSKLSSAY 278 (279)
Q Consensus 249 ~wd~~~~-~~~~~~~~~~--~~v~~~~~spdg~ 278 (279)
+||++.. +++....+.. -+-+.++||||.+
T Consensus 390 vWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 390 VWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred eeeccccccchhhhcCCCccCCCCccccCCCce
Confidence 9999976 4666655433 2567899999865
No 55
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.8e-26 Score=174.80 Aligned_cols=215 Identities=20% Similarity=0.336 Sum_probs=164.4
Q ss_pred eeeEecCCCCcccc----eeeeeeccCCCCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672 35 PLIRFDVPPHRTYH----FYNQFRTSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109 (279)
Q Consensus 35 ~~~~~d~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 109 (279)
.+++||..+..... ..+.-..+.||.+.=.+++|++... .|++++.|++|++||+......... .
T Consensus 148 dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~----------~ 217 (422)
T KOG0264|consen 148 DVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKV----------V 217 (422)
T ss_pred CEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCcc----------c
Confidence 67888876543322 1223337889998888899999443 7889999999999999865432110 1
Q ss_pred ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC--CeeeEEEeccCccccccceeeEEECCCCCE
Q 023672 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTK 187 (279)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 187 (279)
....+...|...|.+++|+|. +...|++++.|+.+.|||+|+ .++......|.. .|.|++|+|-+.+
T Consensus 218 ~p~~~~~~h~~~VeDV~~h~~------h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~-----~vn~~~fnp~~~~ 286 (422)
T KOG0264|consen 218 DPKTIFSGHEDVVEDVAWHPL------HEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSA-----EVNCVAFNPFNEF 286 (422)
T ss_pred cceEEeecCCcceehhhcccc------chhhheeecCCCeEEEEEcCCCCCCCcccccccCC-----ceeEEEeCCCCCc
Confidence 122356678889999999876 556899999999999999994 455555556655 9999999997655
Q ss_pred EE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC----------
Q 023672 188 IF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---------- 255 (279)
Q Consensus 188 l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~---------- 255 (279)
++ +| .|++|++||+|+-.. .+..+ .+|...|.++.|+|....+|++++.|+.+.+||+..-
T Consensus 287 ilAT~S~D~tV~LwDlRnL~~---~lh~~----e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~ 359 (422)
T KOG0264|consen 287 ILATGSADKTVALWDLRNLNK---PLHTF----EGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAE 359 (422)
T ss_pred eEEeccCCCcEEEeechhccc---Cceec----cCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhc
Confidence 54 66 899999999997533 22333 7999999999999988899999999999999998531
Q ss_pred ----eEEEEEeecCCCEEEEEEccCC
Q 023672 256 ----ELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 256 ----~~~~~~~~~~~~v~~~~~spdg 277 (279)
+++..-.||...|..+.|+|+-
T Consensus 360 dgppEllF~HgGH~~kV~DfsWnp~e 385 (422)
T KOG0264|consen 360 DGPPELLFIHGGHTAKVSDFSWNPNE 385 (422)
T ss_pred cCCcceeEEecCcccccccccCCCCC
Confidence 3456667899999999999975
No 56
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.1e-26 Score=184.85 Aligned_cols=198 Identities=18% Similarity=0.337 Sum_probs=146.5
Q ss_pred ccC-CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccc-------------------------cc--c--------
Q 023672 55 TSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-------------------------YD--V-------- 98 (279)
Q Consensus 55 ~~~-~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-------------------------~~--~-------- 98 (279)
.+. +|.++|++|.|++||+|||+|+.||.|+||.+.+.... .. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 455 99999999999999999999999999999998761110 00 0
Q ss_pred ----ccccccC----CCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcc
Q 023672 99 ----NACSLAK----DQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV 170 (279)
Q Consensus 99 ----~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~ 170 (279)
..+...+ .-.........+|...|.++.|+ ..++|++++.|.+|+||++...++++.|....
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--------Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd-- 410 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--------KNNFLLSSSMDKTVRLWHPGRKECLKVFSHND-- 410 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccc--------cCCeeEeccccccEEeecCCCcceeeEEecCC--
Confidence 0000000 00000111233566788888883 34589999999999999999999999998655
Q ss_pred ccccceeeEEECCC-CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEE
Q 023672 171 DEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSA 248 (279)
Q Consensus 171 ~~~~~v~~~~~~~~-~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~ 248 (279)
.|+|++|+|. .+++++| -|+.||||++... ..... ..-..-|++++|.| +|+..+.|+.+|.++
T Consensus 411 ----fVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~--~Vv~W-------~Dl~~lITAvcy~P-dGk~avIGt~~G~C~ 476 (712)
T KOG0283|consen 411 ----FVTCVAFNPVDDRYFISGSLDGKVRLWSISDK--KVVDW-------NDLRDLITAVCYSP-DGKGAVIGTFNGYCR 476 (712)
T ss_pred ----eeEEEEecccCCCcEeecccccceEEeecCcC--eeEee-------hhhhhhheeEEecc-CCceEEEEEeccEEE
Confidence 9999999995 5788887 9999999999862 22222 12246799999999 899999999999999
Q ss_pred EEecCCCeEEEEEee--c------CCCEEEEEEccC
Q 023672 249 IYREDNMELLYVLHG--Q------EGGVTHVSKLSS 276 (279)
Q Consensus 249 ~wd~~~~~~~~~~~~--~------~~~v~~~~~spd 276 (279)
+|+....+......- | ...|+++.|.|.
T Consensus 477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~ 512 (712)
T KOG0283|consen 477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG 512 (712)
T ss_pred EEEccCCeEEEeeeEeeccCccccCceeeeeEecCC
Confidence 999988876654432 2 126999999874
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.95 E-value=4.8e-25 Score=170.14 Aligned_cols=200 Identities=24% Similarity=0.385 Sum_probs=161.8
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+.+|+....+... .+.+|...|.++.|+++++++++++.||.|.+||+.+++... .
T Consensus 74 ~i~i~~~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----------------~ 130 (289)
T cd00200 74 TIRLWDLETGECVR------TLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLT-----------------T 130 (289)
T ss_pred eEEEEEcCcccceE------EEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEE-----------------E
Confidence 56677777654433 456788899999999998889888889999999998543211 1
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (279)
...+...+.++.| +|++.++++++.++.|++||+++++....+..+.. .+.++.|+|+++.++++ .+
T Consensus 131 ~~~~~~~i~~~~~-------~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 131 LRGHTDWVNSVAF-------SPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-----EVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred eccCCCcEEEEEE-------cCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-----ccceEEECCCcCEEEEecCC
Confidence 1134557888877 56678888888899999999998888888876654 78999999999877755 89
Q ss_pred CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK 273 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 273 (279)
+.+++||++.. .....+ ..|...+.+++|+| ++.++++++.||.|++||+.+++++..+..|...|.+++|
T Consensus 199 ~~i~i~d~~~~----~~~~~~----~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~ 269 (289)
T cd00200 199 GTIKLWDLSTG----KCLGTL----RGHENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAW 269 (289)
T ss_pred CcEEEEECCCC----ceecch----hhcCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEE
Confidence 99999999873 222222 46777999999999 7888888888999999999999999999999999999999
Q ss_pred ccCCC
Q 023672 274 LSSAY 278 (279)
Q Consensus 274 spdg~ 278 (279)
+|+|+
T Consensus 270 ~~~~~ 274 (289)
T cd00200 270 SPDGK 274 (289)
T ss_pred CCCCC
Confidence 99875
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=3e-25 Score=193.14 Aligned_cols=204 Identities=13% Similarity=0.174 Sum_probs=155.0
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
.+.+||+.+++.+. .+.+|.+.|++++|+| ++.+|++|+.||+|++||+.++....
T Consensus 556 ~v~lWd~~~~~~~~------~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~----------------- 612 (793)
T PLN00181 556 VVQVWDVARSQLVT------EMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG----------------- 612 (793)
T ss_pred eEEEEECCCCeEEE------EecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE-----------------
Confidence 56788888766544 6778999999999997 78999999999999999998653311
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCCCCEEEE-e
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G 191 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~ 191 (279)
.......+.++.|. ++++.+|++|+.|+.|++||+++.+ ....+..|.. .|.++.|. ++..+++ +
T Consensus 613 -~~~~~~~v~~v~~~------~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~-----~V~~v~f~-~~~~lvs~s 679 (793)
T PLN00181 613 -TIKTKANICCVQFP------SESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK-----TVSYVRFV-DSSTLVSSS 679 (793)
T ss_pred -EEecCCCeEEEEEe------CCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC-----CEEEEEEe-CCCEEEEEE
Confidence 11223467777763 3478899999999999999998765 4556666655 89999997 5666765 4
Q ss_pred cCCeEEEEEccCCCC--ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE--------
Q 023672 192 YNKSVRVFDVHRPGR--DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL-------- 261 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~-------- 261 (279)
.|+.|++||++.+.. ....+..+ .+|...+.+++|+| ++.+|++|+.|+.|++|+.....++..+
T Consensus 680 ~D~~ikiWd~~~~~~~~~~~~l~~~----~gh~~~i~~v~~s~-~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~ 754 (793)
T PLN00181 680 TDNTLKLWDLSMSISGINETPLHSF----MGHTNVKNFVGLSV-SDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPV 754 (793)
T ss_pred CCCEEEEEeCCCCccccCCcceEEE----cCCCCCeeEEEEcC-CCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcc
Confidence 999999999985311 11222333 68889999999999 8899999999999999998766443222
Q ss_pred -----eecCCCEEEEEEccCCCC
Q 023672 262 -----HGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 262 -----~~~~~~v~~~~~spdg~~ 279 (279)
..+...|.+++|+|+|.+
T Consensus 755 ~~~~~~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 755 SGLEVDDASQFISSVCWRGQSST 777 (793)
T ss_pred cccccCCCCcEEEEEEEcCCCCe
Confidence 234457999999999863
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=1.4e-27 Score=175.67 Aligned_cols=196 Identities=15% Similarity=0.221 Sum_probs=160.5
Q ss_pred cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672 30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109 (279)
Q Consensus 30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 109 (279)
++..-.+++||+.+++++. ++.+|..+|..+.|+. .+++|+|.|.++.+||+..... .
T Consensus 253 GSSDsTvrvWDv~tge~l~------tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~--------------i 310 (499)
T KOG0281|consen 253 GSSDSTVRVWDVNTGEPLN------TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTD--------------I 310 (499)
T ss_pred cCCCceEEEEeccCCchhh------HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchH--------------H
Confidence 3344468899999999987 8899999999999984 5899999999999999985421 1
Q ss_pred ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
....+..+|...|..+.| +.+++++++.|.+|++|++.+++.++++.+|.. .|-|+.+ .+++++
T Consensus 311 t~rrVLvGHrAaVNvVdf---------d~kyIVsASgDRTikvW~~st~efvRtl~gHkR-----GIAClQY--r~rlvV 374 (499)
T KOG0281|consen 311 TLRRVLVGHRAAVNVVDF---------DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKR-----GIACLQY--RDRLVV 374 (499)
T ss_pred HHHHHHhhhhhheeeecc---------ccceEEEecCCceEEEEeccceeeehhhhcccc-----cceehhc--cCeEEE
Confidence 122245677788999887 677999999999999999999999999998886 7777665 578888
Q ss_pred Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe---------EEE
Q 023672 190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME---------LLY 259 (279)
Q Consensus 190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~---------~~~ 259 (279)
+| .|.+|++||+..+ .++..+ +||..-|.++.|.. ..+++|+.||+|++||+.++. ++.
T Consensus 375 SGSSDntIRlwdi~~G----~cLRvL----eGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~ 443 (499)
T KOG0281|consen 375 SGSSDNTIRLWDIECG----ACLRVL----EGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLR 443 (499)
T ss_pred ecCCCceEEEEecccc----HHHHHH----hchHHhhhheeecC---ceeeeccccceEEEEecccccCCcccccchHHH
Confidence 87 9999999999985 444444 89999999999954 689999999999999997653 455
Q ss_pred EEeecCCCEEEEEEc
Q 023672 260 VLHGQEGGVTHVSKL 274 (279)
Q Consensus 260 ~~~~~~~~v~~~~~s 274 (279)
++..|++.|..+.|.
T Consensus 444 ~lv~hsgRVFrLQFD 458 (499)
T KOG0281|consen 444 TLVEHSGRVFRLQFD 458 (499)
T ss_pred hhhhccceeEEEeec
Confidence 666788888887774
No 60
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.2e-25 Score=180.26 Aligned_cols=184 Identities=16% Similarity=0.320 Sum_probs=154.7
Q ss_pred CCCCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672 58 IPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (279)
Q Consensus 58 ~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (279)
--...|..++|+..|.+||.|+. -|.+.||++....+.- ...+|...+.++.+ +|
T Consensus 305 is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVl-----------------KQQgH~~~i~~l~Y-------Sp 360 (893)
T KOG0291|consen 305 ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVL-----------------KQQGHSDRITSLAY-------SP 360 (893)
T ss_pred cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceee-----------------eccccccceeeEEE-------CC
Confidence 34567999999999999998775 4899999998653311 22346668888887 88
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecc
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~ 215 (279)
||+++|+|+.||+|++||..++-+..++..|.. .|+.+.|+..++.++++ .||+|+.||+.. . ..+.++.
T Consensus 361 Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-----~Vt~v~f~~~g~~llssSLDGtVRAwDlkR-Y---rNfRTft 431 (893)
T KOG0291|consen 361 DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-----GVTAVQFTARGNVLLSSSLDGTVRAWDLKR-Y---RNFRTFT 431 (893)
T ss_pred CCcEEEeccCCCcEEEEeccCceEEEEeccCCC-----ceEEEEEEecCCEEEEeecCCeEEeeeecc-c---ceeeeec
Confidence 999999999999999999999999999999987 99999999999999965 999999999987 3 3333442
Q ss_pred cccCCCCCceEEEEEccCCCcEEEEEeCCCc-EEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
. .......|++..| .|.++++|+.|.. |.+|++.+|+++..+.+|++||.+++|+|+|.
T Consensus 432 ~---P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~ 491 (893)
T KOG0291|consen 432 S---PEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS 491 (893)
T ss_pred C---CCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence 1 2234577899999 8999999998875 99999999999999999999999999999985
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.95 E-value=2.4e-25 Score=193.78 Aligned_cols=190 Identities=17% Similarity=0.269 Sum_probs=148.2
Q ss_pred cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (279)
+.+|.+.|.+++|+|++++||+|+.|++|+||++......... .........+...+.+++|+|.
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~----------~~~~~~~~~~~~~v~~l~~~~~----- 543 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD----------IHYPVVELASRSKLSGICWNSY----- 543 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc----------cccceEEecccCceeeEEeccC-----
Confidence 4569999999999999999999999999999998642110000 0001122233457888888542
Q ss_pred CCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC-CCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
++.+|++++.|++|++||+.+++.+..+..|.. .|++++|+| ++.+|++| .|+.|++||++++ .....
T Consensus 544 -~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-----~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~----~~~~~ 613 (793)
T PLN00181 544 -IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-----RVWSIDYSSADPTLLASGSDDGSVKLWSINQG----VSIGT 613 (793)
T ss_pred -CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-----CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC----cEEEE
Confidence 467899999999999999999998888887776 899999997 67888866 9999999999873 22223
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEEEeecCCCEEEEEEcc
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~sp 275 (279)
+ .. ...+.++.|++.++.+|++|+.||.|++||+++.+ ++..+.+|...|.++.|.+
T Consensus 614 ~----~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~ 671 (793)
T PLN00181 614 I----KT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD 671 (793)
T ss_pred E----ec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC
Confidence 3 22 34689999966479999999999999999998876 5678889999999999974
No 62
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.5e-26 Score=187.23 Aligned_cols=206 Identities=14% Similarity=0.230 Sum_probs=169.3
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+..||..=+.+++ .+..|.++|.+++|+|.+.++++|+.|-.|+||+..+.++.. .
T Consensus 32 ~IQlWDYRM~tli~------rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclf-----------------t 88 (1202)
T KOG0292|consen 32 VIQLWDYRMGTLID------RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLF-----------------T 88 (1202)
T ss_pred eeeeehhhhhhHHh------hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehh-----------------h
Confidence 45667776666666 788899999999999999999999999999999998765422 2
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (279)
..+|-.-|..+.| ++.-.+|+|+|.|.+|+||+..+++++..+.+|.+ .|.|..|+|....++++ .|
T Consensus 89 L~GHlDYVRt~~F-------HheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH-----YVMcAqFhptEDlIVSaSLD 156 (1202)
T KOG0292|consen 89 LLGHLDYVRTVFF-------HHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH-----YVMCAQFHPTEDLIVSASLD 156 (1202)
T ss_pred hccccceeEEeec-------cCCCceEEEccCCCeEEEEeccCCceEEEEecCce-----EEEeeccCCccceEEEeccc
Confidence 3455566777766 45566999999999999999999999999999998 99999999999999965 99
Q ss_pred CeEEEEEccCCC----Cce-----------------eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 194 KSVRVFDVHRPG----RDF-----------------EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 194 ~~i~~~d~~~~~----~~~-----------------~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
.+|||||+..-. .+. ..-..++....||...|+-++|+| .-.++++|+.|..|++|.+
T Consensus 157 QTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp-TlpliVSG~DDRqVKlWrm 235 (1202)
T KOG0292|consen 157 QTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP-TLPLIVSGADDRQVKLWRM 235 (1202)
T ss_pred ceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC-CcceEEecCCcceeeEEEe
Confidence 999999986310 000 001233445589999999999999 8889999999999999999
Q ss_pred CCCe--EEEEEeecCCCEEEEEEccC
Q 023672 253 DNME--LLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 253 ~~~~--~~~~~~~~~~~v~~~~~spd 276 (279)
...+ .+.+..+|.++|.++-|+|.
T Consensus 236 netKaWEvDtcrgH~nnVssvlfhp~ 261 (1202)
T KOG0292|consen 236 NETKAWEVDTCRGHYNNVSSVLFHPH 261 (1202)
T ss_pred ccccceeehhhhcccCCcceEEecCc
Confidence 7655 46788999999999999994
No 63
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=7.9e-25 Score=177.94 Aligned_cols=208 Identities=10% Similarity=0.198 Sum_probs=153.3
Q ss_pred eeeeEecCCCCcccc-eeeeeeccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672 34 WPLIRFDVPPHRTYH-FYNQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 34 ~~~~~~d~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
-.+.+||+.+..... .......+.+|...|.+++|+|++ ++|++|+.|++|+|||+.++....
T Consensus 98 gtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~--------------- 162 (493)
T PTZ00421 98 GTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE--------------- 162 (493)
T ss_pred CEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE---------------
Confidence 367789887653211 112334678999999999999975 689999999999999998653211
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-E
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A 190 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 190 (279)
....|...|.+++| +|++.+|++++.|++|++||+++++.+..+..|... .+..+.|.+++..++ +
T Consensus 163 --~l~~h~~~V~sla~-------spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~----~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 163 --VIKCHSDQITSLEW-------NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA----KSQRCLWAKRKDLIITL 229 (493)
T ss_pred --EEcCCCCceEEEEE-------ECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC----cceEEEEcCCCCeEEEE
Confidence 22345678999988 668899999999999999999999988888766531 234678888877776 4
Q ss_pred e----cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecCCCeEEEEEee-c
Q 023672 191 G----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNMELLYVLHG-Q 264 (279)
Q Consensus 191 ~----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~~~~~~~~~~~-~ 264 (279)
| .|+.|++||+++...+.... . ..+...+....|++ ++.+|++|+ .|+.|++||+.+++++..... +
T Consensus 230 G~s~s~Dr~VklWDlr~~~~p~~~~-~-----~d~~~~~~~~~~d~-d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s 302 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMASPYSTV-D-----LDQSSALFIPFFDE-DTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS 302 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCCceeEe-c-----cCCCCceEEEEEcC-CCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC
Confidence 4 37899999998743332211 1 12234566678899 788888776 599999999999988776654 4
Q ss_pred CCCEEEEEEccC
Q 023672 265 EGGVTHVSKLSS 276 (279)
Q Consensus 265 ~~~v~~~~~spd 276 (279)
..++.+++|.|.
T Consensus 303 ~~~~~g~~~~pk 314 (493)
T PTZ00421 303 VEPHKGLCMMPK 314 (493)
T ss_pred CCCCcceEeccc
Confidence 457888888874
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=4e-26 Score=182.91 Aligned_cols=193 Identities=16% Similarity=0.206 Sum_probs=162.0
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec------CCCceEEEEee
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT------EGESVYDFCWF 128 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~~~~~ 128 (279)
+..+|.+.|+.++.+||++.++|||.|.+|++||..--... .......+... -...|.++.+
T Consensus 449 ti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~-----------~gt~~k~lsl~~~rtLel~ddvL~v~~- 516 (888)
T KOG0306|consen 449 TIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV-----------PGTQKKVLSLKHTRTLELEDDVLCVSV- 516 (888)
T ss_pred hhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc-----------CcccceeeeeccceEEeccccEEEEEE-
Confidence 67799999999999999999999999999999998521110 00000012222 2235666654
Q ss_pred CcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCc
Q 023672 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~ 207 (279)
|||+++|+.+--|.+|++|-+++-+....+.+|.- +|.||.++||++.+++| .|..|++|-+.-+
T Consensus 517 ------Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL-----PV~smDIS~DSklivTgSADKnVKiWGLdFG--- 582 (888)
T KOG0306|consen 517 ------SPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL-----PVLSMDISPDSKLIVTGSADKNVKIWGLDFG--- 582 (888)
T ss_pred ------cCCCcEEEEEeccCeEEEEEecceeeeeeeccccc-----ceeEEeccCCcCeEEeccCCCceEEeccccc---
Confidence 88999999999999999999999999889988887 99999999999999976 9999999999874
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
.+...+ -+|.+.|.++.|-| ...++.+++.|+.|+-||-...+++.++.+|...|++++.+|+|.|
T Consensus 583 -DCHKS~----fAHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~ 648 (888)
T KOG0306|consen 583 -DCHKSF----FAHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSF 648 (888)
T ss_pred -hhhhhh----hcccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCe
Confidence 333333 69999999999999 8999999999999999999999999999999999999999999965
No 65
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.3e-25 Score=163.56 Aligned_cols=208 Identities=17% Similarity=0.202 Sum_probs=135.9
Q ss_pred eEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc---------cccccccCCC
Q 023672 37 IRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD---------VNACSLAKDQ 107 (279)
Q Consensus 37 ~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~~ 107 (279)
..|+.......|.+. ...+++|.+.|++|+|+.||++|+|++.|++|+||+++....... .....+....
T Consensus 64 ~~~k~~q~~f~Hpl~-~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~Fap 142 (420)
T KOG2096|consen 64 DQWKAKQPTFVHPLN-VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAP 142 (420)
T ss_pred hhhcccCCCcccchh-hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECC
Confidence 344544444444332 237899999999999999999999999999999999975422100 0000000111
Q ss_pred CcccceeeecCCCceEE---------------EEeeC-----------cccccCCCCcEEEEecCCCcEEEEECCCCeee
Q 023672 108 DSYEASLVVTEGESVYD---------------FCWFP-----------HMSASDPTSCVFASTTRDHPIHLWDATTGLLR 161 (279)
Q Consensus 108 ~~~~~~~~~~~~~~v~~---------------~~~~~-----------~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~ 161 (279)
+-....+..+.++.++. +.|.. ..+-+..++.+|++++.|..|.+|+++ |+.+
T Consensus 143 Dc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 143 DCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLL 221 (420)
T ss_pred CcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Ccee
Confidence 11111111111111111 11100 011234567899999999999999998 8888
Q ss_pred EEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCC-CceeeeeecccccCCCCCceEEEEEccCCCcEEE
Q 023672 162 CTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239 (279)
Q Consensus 162 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~ 239 (279)
..+..... .-+..+.+|+|+++++ |....|++|.+--.. ..++.... ...+++|...|..++|+| +...++
T Consensus 222 ~~idtnq~-----~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r-vf~LkGH~saV~~~aFsn-~S~r~v 294 (420)
T KOG2096|consen 222 QSIDTNQS-----SNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR-VFSLKGHQSAVLAAAFSN-SSTRAV 294 (420)
T ss_pred eeeccccc-----cccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhh-hheeccchhheeeeeeCC-CcceeE
Confidence 88776554 4567899999999995 588899999874311 11111111 112379999999999999 999999
Q ss_pred EEeCCCcEEEEecC
Q 023672 240 IGSYSQTSAIYRED 253 (279)
Q Consensus 240 ~~~~dg~i~~wd~~ 253 (279)
+.+.||+++|||..
T Consensus 295 tvSkDG~wriwdtd 308 (420)
T KOG2096|consen 295 TVSKDGKWRIWDTD 308 (420)
T ss_pred EEecCCcEEEeecc
Confidence 99999999999963
No 66
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=5.2e-26 Score=181.79 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=160.7
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+++++.++..+. .+.||++.|.++....+|-+|+||+.|.++++|.++++.... .....
T Consensus 347 ~lr~y~~~~~~c~-------ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~-------------~~~a~ 406 (775)
T KOG0319|consen 347 ELRLYTLPTSYCQ-------IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS-------------LCVAQ 406 (775)
T ss_pred ceEEEecCCCceE-------EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh-------------hhhhh
Confidence 3455566655553 788999999999966678899999999999999995443211 11113
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeE---------EEeccCccccccceeeEEECCCC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC---------TYRAYDAVDEITAAFSVAFNPTG 185 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~---------~~~~~~~~~~~~~v~~~~~~~~~ 185 (279)
...|.+.|..++.+-. ...+|+++|.|.++++|++...+... ....|+. .|++++++|+.
T Consensus 407 ~~gH~~svgava~~~~------~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdK-----dIN~Vaia~nd 475 (775)
T KOG0319|consen 407 ANGHTNSVGAVAGSKL------GASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDK-----DINCVAIAPND 475 (775)
T ss_pred hcccccccceeeeccc------CccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcc-----cccceEecCCC
Confidence 3567778888876322 23489999999999999998632211 1223443 89999999999
Q ss_pred CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
+++++| .|.+.++|++... . +...+.+|...|.++.|+| ..+.++|+|.|++|+||.+.+..|+.++.+|
T Consensus 476 kLiAT~SqDktaKiW~le~~----~----l~~vLsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH 546 (775)
T KOG0319|consen 476 KLIATGSQDKTAKIWDLEQL----R----LLGVLSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGH 546 (775)
T ss_pred ceEEecccccceeeecccCc----e----EEEEeeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCc
Confidence 999976 9999999999852 3 3333489999999999999 8999999999999999999999999999999
Q ss_pred CCCEEEEEEccCCC
Q 023672 265 EGGVTHVSKLSSAY 278 (279)
Q Consensus 265 ~~~v~~~~~spdg~ 278 (279)
...|..+.|-.+|+
T Consensus 547 ~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 547 TSAVLRASFIRNGK 560 (775)
T ss_pred cceeEeeeeeeCCc
Confidence 99999999988775
No 67
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.6e-26 Score=182.73 Aligned_cols=195 Identities=18% Similarity=0.247 Sum_probs=156.4
Q ss_pred eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
.++..+.||.+.|..+.|+.++ +|+++|.|.+|+||++....+ ...+.|..-|++++|+|.
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~C------------------L~~F~HndfVTcVaFnPv 420 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKEC------------------LKVFSHNDFVTCVAFNPV 420 (712)
T ss_pred cchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcce------------------eeEEecCCeeEEEEeccc
Confidence 3455899999999999999765 899999999999999986543 245788899999999886
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~ 209 (279)
|.++|++|+.|+.|+||++...+.+.-...+. -|++++|.|+|+..++| .+|.+++|+.+.. .+.
T Consensus 421 ------DDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~------lITAvcy~PdGk~avIGt~~G~C~fY~t~~l--k~~ 486 (712)
T KOG0283|consen 421 ------DDRYFISGSLDGKVRLWSISDKKVVDWNDLRD------LITAVCYSPDGKGAVIGTFNGYCRFYDTEGL--KLV 486 (712)
T ss_pred ------CCCcEeecccccceEEeecCcCeeEeehhhhh------hheeEEeccCCceEEEEEeccEEEEEEccCC--eEE
Confidence 88999999999999999999888776666554 89999999999999988 9999999999862 121
Q ss_pred eeeec--c-cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC--CEEEEEEccCCCC
Q 023672 210 KYSTL--K-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG--GVTHVSKLSSAYT 279 (279)
Q Consensus 210 ~~~~~--~-~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~spdg~~ 279 (279)
.-..+ . .....|. .|+.+.|.|.+...+++.+.|..|+|+|.++.+++..|+++.. .-....|+.||+|
T Consensus 487 ~~~~I~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~ 560 (712)
T KOG0283|consen 487 SDFHIRLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKH 560 (712)
T ss_pred EeeeEeeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCE
Confidence 11111 1 1112333 8999999995555677778899999999999999999987542 4467889999986
No 68
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.3e-24 Score=157.91 Aligned_cols=191 Identities=23% Similarity=0.304 Sum_probs=145.5
Q ss_pred eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
..+.+.||...|++++.+|-+..+++++.|++|++||++..+... +....+.++
T Consensus 92 ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg-----------------~l~~~~~pi--------- 145 (311)
T KOG1446|consen 92 YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG-----------------LLNLSGRPI--------- 145 (311)
T ss_pred eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce-----------------EEecCCCcc---------
Confidence 344899999999999999988999999999999999998543311 111112222
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCce
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF 208 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~ 208 (279)
.|++|.|-++|++.....|++||++.- .+-.++.... ........|.|+|+|++++.+ ..+.+++.|--++ .
T Consensus 146 ~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G-~-- 220 (311)
T KOG1446|consen 146 AAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG-T-- 220 (311)
T ss_pred eeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC-c--
Confidence 366999999999998889999999863 3444554432 111267899999999999966 8899999999884 2
Q ss_pred eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccC
Q 023672 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSS 276 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spd 276 (279)
....+...... ..-..+.+|+| +++++++|+.||+|.+|+++++..+..+.+ +.+++.++.|+|-
T Consensus 221 -~~~tfs~~~~~-~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~ 286 (311)
T KOG1446|consen 221 -VKSTFSGYPNA-GNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR 286 (311)
T ss_pred -EeeeEeeccCC-CCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence 22233211111 11226789999 999999999999999999999999999998 6889999999984
No 69
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.5e-25 Score=180.05 Aligned_cols=207 Identities=14% Similarity=0.246 Sum_probs=169.9
Q ss_pred ccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672 29 QQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQD 108 (279)
Q Consensus 29 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 108 (279)
.+...+.+.+|+..+.+++. ++.||-+.|..+.|++.-.+++++|.|.+|+||++.+..+.
T Consensus 68 SGGDDykIkVWnYk~rrclf------tL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~i------------- 128 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF------TLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCI------------- 128 (1202)
T ss_pred ecCCccEEEEEecccceehh------hhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceE-------------
Confidence 34556688999999998877 89999999999999999999999999999999999876442
Q ss_pred cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee----------------------------
Q 023672 109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---------------------------- 160 (279)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~---------------------------- 160 (279)
.+..+|..-|.+..| +|....++|+|-|.+|++||+..-+.
T Consensus 129 ----avltGHnHYVMcAqF-------hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 129 ----AVLTGHNHYVMCAQF-------HPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred ----EEEecCceEEEeecc-------CCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 145677778888776 56677999999999999999963211
Q ss_pred -eEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE
Q 023672 161 -RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML 238 (279)
Q Consensus 161 -~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l 238 (279)
...+. +|.+.|+.++|+|.-.++++| .|..|++|.+.. .+.++ .-+. .+|.+.|.++-|+| ...++
T Consensus 198 VK~VLE-----GHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmne-tKaWE-vDtc----rgH~nnVssvlfhp-~q~lI 265 (1202)
T KOG0292|consen 198 VKHVLE-----GHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNE-TKAWE-VDTC----RGHYNNVSSVLFHP-HQDLI 265 (1202)
T ss_pred eeeeec-----ccccccceEEecCCcceEEecCCcceeeEEEecc-cccee-ehhh----hcccCCcceEEecC-cccee
Confidence 11122 344589999999999999987 899999999986 22222 2233 69999999999999 99999
Q ss_pred EEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 239 AIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 239 ~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
++.++|++|+|||+.....+.+++.-.+.-+.++-+|..
T Consensus 266 lSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~l 304 (1202)
T KOG0292|consen 266 LSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPEL 304 (1202)
T ss_pred EecCCCccEEEEecccccceeeeeccCCeEEEEEecCCc
Confidence 999999999999999999999998767788888888865
No 70
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=4e-24 Score=174.91 Aligned_cols=213 Identities=9% Similarity=0.198 Sum_probs=148.7
Q ss_pred eeeeeEecCCCCcc-cc-eeeeeeccCCCCCceEEEEEccCCCe-EEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672 33 TWPLIRFDVPPHRT-YH-FYNQFRTSSIPNNFLKGIKWSPDGSS-FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109 (279)
Q Consensus 33 ~~~~~~~d~~~~~~-~~-~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 109 (279)
.-.+++||+.+... .. .......+.+|.+.|.+++|+|++.. |++++.|++|+|||+.++...
T Consensus 96 DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~-------------- 161 (568)
T PTZ00420 96 DLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRA-------------- 161 (568)
T ss_pred CCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEE--------------
Confidence 34678899876432 11 11122357789999999999998875 578999999999999875421
Q ss_pred ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
....+...|.++.| +|+|.+|++++.|+.|++||+++++.+..+..|........+....|++++.+++
T Consensus 162 ----~~i~~~~~V~Slsw-------spdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~Il 230 (568)
T PTZ00420 162 ----FQINMPKKLSSLKW-------NIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYIL 230 (568)
T ss_pred ----EEEecCCcEEEEEE-------CCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEE
Confidence 11223457888877 7789999999999999999999999988888776422222334445678888888
Q ss_pred E-ecC----CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-
Q 023672 190 A-GYN----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG- 263 (279)
Q Consensus 190 ~-~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~- 263 (279)
+ |.| +.|+|||++....+.... .+ ..+.+.+.. .|.++++.++++|+.|+.|++|++..+.. ..+..
T Consensus 231 TtG~d~~~~R~VkLWDlr~~~~pl~~~-~l----d~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~ 303 (568)
T PTZ00420 231 STGFSKNNMREMKLWDLKNTTSALVTM-SI----DNASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEY 303 (568)
T ss_pred EEEcCCCCccEEEEEECCCCCCceEEE-Ee----cCCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCCcE-Eeeccc
Confidence 4 555 479999999644433222 11 233333333 34453789999999999999999987753 22322
Q ss_pred -cCCCEEEEEEccCC
Q 023672 264 -QEGGVTHVSKLSSA 277 (279)
Q Consensus 264 -~~~~v~~~~~spdg 277 (279)
+..++.+++|.|.-
T Consensus 304 ~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 304 KSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccCCCccceEEcccc
Confidence 55688999999963
No 71
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.94 E-value=2.2e-24 Score=166.57 Aligned_cols=208 Identities=14% Similarity=0.280 Sum_probs=151.0
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccc-c-ccc-----------------cccccCCCCcccceee
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS-Y-DVN-----------------ACSLAKDQDSYEASLV 115 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~-~-~~~-----------------~~~~~~~~~~~~~~~~ 115 (279)
....|...++-..|+|.|-++|+|...|+|+|||....... . +.. ......+..++...+.
T Consensus 54 iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~ 133 (603)
T KOG0318|consen 54 IYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFL 133 (603)
T ss_pred eeccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEE
Confidence 67789999999999999999999999999999998753221 0 000 0000001111111111
Q ss_pred ----------ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC
Q 023672 116 ----------VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185 (279)
Q Consensus 116 ----------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (279)
.+|...|.++.+-|. ..-.+++|+.|++|.+|+-.--+...++..|.. .|+++.|+|||
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~Kps------RPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk-----FV~~VRysPDG 202 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPS------RPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK-----FVNCVRYSPDG 202 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCC------CceEEEeccCCCeEEEeeCCCeeeeeccccccc-----ceeeEEECCCC
Confidence 123334555554433 123699999999999999766666666776665 99999999999
Q ss_pred CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE----
Q 023672 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV---- 260 (279)
Q Consensus 186 ~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~---- 260 (279)
.+++ +|.||.+.+||-.++ +....+.. ..+|.+.|.++.|+| ++..+++++.|.+++|||+.+.+++.+
T Consensus 203 ~~Fat~gsDgki~iyDGktg----e~vg~l~~-~~aHkGsIfalsWsP-Ds~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTG----EKVGELED-SDAHKGSIFALSWSP-DSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred CeEEEecCCccEEEEcCCCc----cEEEEecC-CCCccccEEEEEECC-CCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 9999 569999999999985 23333322 269999999999999 999999999999999999877654333
Q ss_pred ---------------------------------------EeecCCCEEEEEEccCCCC
Q 023672 261 ---------------------------------------LHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 261 ---------------------------------------~~~~~~~v~~~~~spdg~~ 279 (279)
+.+|...|++++.+|||+|
T Consensus 277 ~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~ 334 (603)
T KOG0318|consen 277 STVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKT 334 (603)
T ss_pred CchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCE
Confidence 4678888999999998864
No 72
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=4.1e-25 Score=159.38 Aligned_cols=203 Identities=20% Similarity=0.268 Sum_probs=152.8
Q ss_pred ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
....|.+.|+++...+ .|+++++|+.||.|.+||+++........ .. .....-........|.-.|.++.|.|.
T Consensus 38 ~~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~-li-~k~~c~v~~~h~~~Hky~iss~~WyP~--- 112 (397)
T KOG4283|consen 38 FVRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG-LI-AKHKCIVAKQHENGHKYAISSAIWYPI--- 112 (397)
T ss_pred eeccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhcc-ce-eheeeeccccCCccceeeeeeeEEeee---
Confidence 3456899999999988 89999999999999999998643111000 00 000000001122345567889999886
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC---CEEEEe-cCCeEEEEEccCCCCcee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---TKIFAG-YNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~-~d~~i~~~d~~~~~~~~~ 209 (279)
|...+.+++.|.++++||.++.+....++..+ .|++-+++|-. -++++| .+-.|++-|+..+ .
T Consensus 113 ---DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~------~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG----s 179 (397)
T KOG4283|consen 113 ---DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG------KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG----S 179 (397)
T ss_pred ---cCceeecccccceEEEeecccceeeEEeecCc------eeehhhcChhhhcceEEEEecCCCcEEEEeccCC----c
Confidence 67799999999999999999999998888877 88999999853 355577 8899999999985 2
Q ss_pred eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEE--------------eecCCCEEEEEEc
Q 023672 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVL--------------HGQEGGVTHVSKL 274 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~--------------~~~~~~v~~~~~s 274 (279)
....+ .+|.+.|.++.|+|...-.|++|+.||.|++||++.. .+...+ ..|.+.|.+++|+
T Consensus 180 ~sH~L----sGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t 255 (397)
T KOG4283|consen 180 FSHTL----SGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT 255 (397)
T ss_pred ceeee----ccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec
Confidence 22333 8999999999999966667889999999999999754 333333 3466789999999
Q ss_pred cCCCC
Q 023672 275 SSAYT 279 (279)
Q Consensus 275 pdg~~ 279 (279)
.||+|
T Consensus 256 Sd~~~ 260 (397)
T KOG4283|consen 256 SDARY 260 (397)
T ss_pred ccchh
Confidence 99975
No 73
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=1.1e-24 Score=154.93 Aligned_cols=190 Identities=18% Similarity=0.217 Sum_probs=157.6
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+.||..+++.+.++.+|.+|.+++.|.+..||-..+++... ...+|.+.|+++..
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-----------------ty~GHtGavW~~Di------- 60 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-----------------TYDGHTGAVWCCDI------- 60 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee-----------------eecCCCceEEEEEe-------
Confidence 578999999999999999999999999999999886654322 34567789998854
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe------cCCeEEEEEccCCCCce
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG------YNKSVRVFDVHRPGRDF 208 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~------~d~~i~~~d~~~~~~~~ 208 (279)
+.+...+++|+.|.++++||+.+|+.+..++... +|..+.|+++|++++.+ ..+.|.++|++......
T Consensus 61 d~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~ 134 (327)
T KOG0643|consen 61 DWDSKHLITGSADQTAKLWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDI 134 (327)
T ss_pred cCCcceeeeccccceeEEEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhh
Confidence 6678899999999999999999999999998876 89999999999988854 34679999998532111
Q ss_pred ---eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEEEeecCCCEEEEEEccCCCC
Q 023672 209 ---EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 209 ---~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
++...+ ..+...++.+-|+| -+..|++|.+||.|..||+++|. .+.....|...|++|.++||..|
T Consensus 135 ~s~ep~~kI----~t~~skit~a~Wg~-l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 135 DSEEPYLKI----PTPDSKITSALWGP-LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY 204 (327)
T ss_pred cccCceEEe----cCCccceeeeeecc-cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence 112222 34567899999999 89999999999999999999985 45666789999999999999754
No 74
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.94 E-value=1.7e-24 Score=160.11 Aligned_cols=171 Identities=12% Similarity=0.156 Sum_probs=148.3
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
++..|++.|.+++.+|+.++++||+.|..-.||++.++... .....|+..|.++.|
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~-----------------~eltgHKDSVt~~~F------- 114 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA-----------------GELTGHKDSVTCCSF------- 114 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce-----------------eEecCCCCceEEEEE-------
Confidence 78899999999999999999999999999999999987532 134678889999987
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+.+|.+||+|+.+|.|+||+..++.....+...-. .+.-+.|+|.+..|++| .||.+.+|.+... .....
T Consensus 115 shdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~-----dieWl~WHp~a~illAG~~DGsvWmw~ip~~----~~~kv 185 (399)
T KOG0296|consen 115 SHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVE-----DIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ----ALCKV 185 (399)
T ss_pred ccCceEEEecCCCccEEEEEcccCceEEEeecccC-----ceEEEEecccccEEEeecCCCcEEEEECCCc----ceeeE
Confidence 78999999999999999999999988888763332 67789999999999988 9999999999873 11222
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
+ .+|..++++=.|.| +|..++++..||+|++||+.+++++..+.+
T Consensus 186 ~----~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~ 230 (399)
T KOG0296|consen 186 M----SGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKITQ 230 (399)
T ss_pred e----cCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEecc
Confidence 3 79999999999999 899999999999999999999999988874
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-24 Score=172.09 Aligned_cols=199 Identities=19% Similarity=0.329 Sum_probs=161.6
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+++|+..++..... ..-+.+.|+++.|+++|++|++|..+|.|.|||..+..... .+
T Consensus 198 ~vylW~~~s~~v~~l------~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~----------------~~ 255 (484)
T KOG0305|consen 198 SVYLWSASSGSVTEL------CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR----------------TL 255 (484)
T ss_pred eEEEEecCCCceEEe------EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc----------------cc
Confidence 578888888875442 22237889999999999999999999999999998653322 13
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEE-EeccCccccccceeeEEECCCCCEEEEe-c
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (279)
..+|...|-+++| ++..+.+|+.|+.|..+|++..+.... +..|.. .|+.+.|++++.++++| .
T Consensus 256 ~~~h~~rvg~laW---------~~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~q-----eVCgLkws~d~~~lASGgn 321 (484)
T KOG0305|consen 256 RGSHASRVGSLAW---------NSSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQ-----EVCGLKWSPDGNQLASGGN 321 (484)
T ss_pred cCCcCceeEEEec---------cCceEEEecCCCcEEEEEEecchhhhhhhhcccc-----eeeeeEECCCCCeeccCCC
Confidence 3447788999999 466899999999999999998776555 666665 89999999999999977 9
Q ss_pred CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe--CCCcEEEEecCCCeEEEEEeecCCCEEE
Q 023672 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS--YSQTSAIYREDNMELLYVLHGQEGGVTH 270 (279)
Q Consensus 193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~~~~v~~ 270 (279)
|+.+.|||.... .....+ ..|..+|.+++|+|-...+||+|+ .|+.|++||..+++.+..+. -...|.+
T Consensus 322 DN~~~Iwd~~~~----~p~~~~----~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcs 392 (484)
T KOG0305|consen 322 DNVVFIWDGLSP----EPKFTF----TEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCS 392 (484)
T ss_pred ccceEeccCCCc----cccEEE----eccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccc-cCCceee
Confidence 999999999653 222223 689999999999998888999875 69999999999999998877 4567999
Q ss_pred EEEccCCC
Q 023672 271 VSKLSSAY 278 (279)
Q Consensus 271 ~~~spdg~ 278 (279)
|.|++..+
T Consensus 393 L~Wsk~~k 400 (484)
T KOG0305|consen 393 LIWSKKYK 400 (484)
T ss_pred EEEcCCCC
Confidence 99998753
No 76
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.5e-26 Score=182.45 Aligned_cols=186 Identities=17% Similarity=0.288 Sum_probs=159.7
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+.+|...|.++.|+++..+|++|+.+|+|++||+++..... ...+|...+..+.|
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr-----------------tLtgh~~~~~sv~f------- 120 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR-----------------TLTGHLLNITSVDF------- 120 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh-----------------hhhccccCcceeee-------
Confidence 578999999999999999999999999999999999754322 12334446666666
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+|-+.++++|+.|..+++||++...+...+..|.. .+..+.|+|+|++++.+ .|..++|||+..+ +
T Consensus 121 ~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~-----vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag----k---- 187 (825)
T KOG0267|consen 121 HPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR-----VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG----K---- 187 (825)
T ss_pred ccceEEeccccccccceehhhhccCceeeecCCcc-----eeEEEeecCCCceeeccCCcceeeeeccccc----c----
Confidence 66788999999999999999998888888887664 78899999999999976 8899999999884 2
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+...+..|...+.++.|+| ..-++++|+.|+++++||+++.+.+........+|.+++|+|||+
T Consensus 188 ~~~ef~~~e~~v~sle~hp-~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 188 LSKEFKSHEGKVQSLEFHP-LEVLLAPGSSDRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGK 251 (825)
T ss_pred cccccccccccccccccCc-hhhhhccCCCCceeeeeccceeEEeeccCCccCCceeeeecCCce
Confidence 2333378999999999999 889999999999999999999999988888888999999999986
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=156.92 Aligned_cols=195 Identities=19% Similarity=0.302 Sum_probs=150.1
Q ss_pred ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
......+.|.+++||| ...+++.+|.||+|++|+++.... ........+.++|.+++|
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~---------------~~~ka~~~~~~PvL~v~W------ 80 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ---------------LVPKAQQSHDGPVLDVCW------ 80 (347)
T ss_pred cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCc---------------ccchhhhccCCCeEEEEE------
Confidence 5667789999999999 555677999999999999986311 111244567789999999
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC--EEEEe-cCCeEEEEEccCCCCceee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KIFAG-YNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~-~d~~i~~~d~~~~~~~~~~ 210 (279)
+.+|..+++|+.|+.+++||+.+++ ...+..|.. +|..+.|-+... .|++| -|.+|+.||.|... +...
T Consensus 81 -sddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~-----pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~-pv~t 152 (347)
T KOG0647|consen 81 -SDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDA-----PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN-PVAT 152 (347)
T ss_pred -ccCCceEEeeccCCceEEEEccCCC-eeeeeeccc-----ceeEEEEecCCCcceeEecccccceeecccCCCC-eeee
Confidence 7789999999999999999999995 455666665 899999987654 67777 99999999999631 1100
Q ss_pred ---------------------------------------------------e--------------------eeccc---
Q 023672 211 ---------------------------------------------------Y--------------------STLKG--- 216 (279)
Q Consensus 211 ---------------------------------------------------~--------------------~~~~~--- 216 (279)
+ ..+..
T Consensus 153 ~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~ 232 (347)
T KOG0647|consen 153 LQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP 232 (347)
T ss_pred eeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc
Confidence 0 00000
Q ss_pred ----ccCCC---------CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 217 ----NKEGQ---------AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 217 ----~~~~~---------~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
.+.-| -.+|++++|+| .-..|++++.||++.+||-.....+.+.+.|..+|++.+|+.+|.+
T Consensus 233 ~~nFtFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 233 KDNFTFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred cCceeEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCE
Confidence 01112 23678899999 7778999999999999999888888888889999999999999964
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.4e-24 Score=180.38 Aligned_cols=209 Identities=21% Similarity=0.385 Sum_probs=159.7
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc---cCCCCcc-cceeeecCCCceEEEEeeCc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL---AKDQDSY-EASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~v~~~~~~~~ 130 (279)
+...|.+.|+|+.|+|||++||+||+|+.|.||+...... ...+.. ......+ ...+...|...|.+++|
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~---~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~W--- 137 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGS---GTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNW--- 137 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCC---cccccccccccccceeeEEEEEecCCCccceecc---
Confidence 6678999999999999999999999999999999885110 000000 0001111 22244568889999999
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCC----
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPG---- 205 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~---- 205 (279)
+|++.++++++.|++|.+||..+.+.+..+..|.. .|..+.|.|-|+++++- .|++|++|+...-+
T Consensus 138 ----sp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s-----~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~ 208 (942)
T KOG0973|consen 138 ----SPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQS-----LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKS 208 (942)
T ss_pred ----CCCccEEEEecccceEEEEccccceeeeeeecccc-----cccceEECCccCeeeeecCCceEEEEEcccceeeEe
Confidence 77899999999999999999999999999999987 89999999999999965 99999999965410
Q ss_pred --Ccee-------------------------------ee-------eecccccCCCCCceEEEEEccC----CCc-----
Q 023672 206 --RDFE-------------------------------KY-------STLKGNKEGQAGIMSAIAFSPT----HTG----- 236 (279)
Q Consensus 206 --~~~~-------------------------------~~-------~~~~~~~~~~~~~v~~~~~sp~----~~~----- 236 (279)
++++ .. ......+-||..++.++.|+|- +..
T Consensus 209 It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~ 288 (942)
T KOG0973|consen 209 ITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTST 288 (942)
T ss_pred eccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCcc
Confidence 0000 00 1112234689999999999981 111
Q ss_pred -------EEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccCCC
Q 023672 237 -------MLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSSAY 278 (279)
Q Consensus 237 -------~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spdg~ 278 (279)
.+|+|+.|++|.||.....+++..+.. ....|.+|+|+|||.
T Consensus 289 ~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 289 QPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF 338 (942)
T ss_pred CCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC
Confidence 788999999999999988888766553 456899999999996
No 79
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=2.5e-25 Score=171.47 Aligned_cols=198 Identities=19% Similarity=0.283 Sum_probs=145.8
Q ss_pred ccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
..+||...++|.+|+|+. ..++|++.||+++|||++..+....+.... .......+++.+.|
T Consensus 263 nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k-----------~~~g~Rv~~tsC~~------ 325 (641)
T KOG0772|consen 263 NTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK-----------PAGGKRVPVTSCAW------ 325 (641)
T ss_pred ccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec-----------cCCCcccCceeeec------
Confidence 567999999999999955 578999999999999998653211110000 11122235666655
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCceeeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~ 212 (279)
++++..||+|..||.|.+|+..+......+...........|+|+.|+++|++|++ |.|+++++||++...+++....
T Consensus 326 -nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~t 404 (641)
T KOG0772|consen 326 -NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRT 404 (641)
T ss_pred -CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhc
Confidence 88999999999999999999865433222222222122237999999999999996 5999999999998665554443
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeC------CCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
.+. ...+-+.++||| +..+|++|.. .|.+.+||..+.+.++.+.-....|..+.|||-
T Consensus 405 gL~-----t~~~~tdc~FSP-d~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whpk 468 (641)
T KOG0772|consen 405 GLP-----TPFPGTDCCFSP-DDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPK 468 (641)
T ss_pred CCC-----ccCCCCccccCC-CceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecch
Confidence 332 123567899999 8899999853 567999999999999999877888999999983
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=2.8e-23 Score=144.81 Aligned_cols=207 Identities=17% Similarity=0.231 Sum_probs=147.6
Q ss_pred eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc------------ccCCC--------------
Q 023672 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS------------LAKDQ-------------- 107 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~~~-------------- 107 (279)
+..+-|++.|.|.+|+|+|++|++|+.|.+|++..++............ ++...
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 3566799999999999999999999999999998776433211000000 00000
Q ss_pred ---------CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc--cccce
Q 023672 108 ---------DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD--EITAA 176 (279)
Q Consensus 108 ---------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~v 176 (279)
.........+|.+.|..+ .+-++-.+++|+.|.+|++||++-..++.++......+ ....|
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilal--------yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILAL--------YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEE--------EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 000000111122222222 12266789999999999999999988888776433222 23479
Q ss_pred eeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672 177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (279)
Q Consensus 177 ~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~ 255 (279)
.+++..|.|++|++| .|....+||++.+ + .++.+ ..|...|.++.|+| +..+|++++.|..|++-|+...
T Consensus 235 aav~vdpsgrll~sg~~dssc~lydirg~-r---~iq~f----~phsadir~vrfsp-~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 235 AAVAVDPSGRLLASGHADSSCMLYDIRGG-R---MIQRF----HPHSADIRCVRFSP-GAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred EEEEECCCcceeeeccCCCceEEEEeeCC-c---eeeee----CCCccceeEEEeCC-CceEEEEecccceEEEeecccc
Confidence 999999999999999 9999999999973 3 33334 68899999999999 9999999999999999998532
Q ss_pred ----eEEEEEeecCCCEEEEEEccCC
Q 023672 256 ----ELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 256 ----~~~~~~~~~~~~v~~~~~spdg 277 (279)
-++..+..|.+.+..+.|+|..
T Consensus 306 la~el~~~vv~ehkdk~i~~rwh~~d 331 (350)
T KOG0641|consen 306 LAHELPIMVVAEHKDKAIQCRWHPQD 331 (350)
T ss_pred hhhcCceEEEEeccCceEEEEecCcc
Confidence 2345566788889999999864
No 81
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.93 E-value=4e-24 Score=151.62 Aligned_cols=222 Identities=15% Similarity=0.180 Sum_probs=151.1
Q ss_pred cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCcccccccccc-----c
Q 023672 30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACS-----L 103 (279)
Q Consensus 30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-----~ 103 (279)
+.....+.+|++...+... .....+|.+.|-.++|+| ....|++++.|.+|++||++.++......... .
T Consensus 38 gs~dktv~v~n~e~~r~~~----~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~ 113 (313)
T KOG1407|consen 38 GSFDKTVSVWNLERDRFRK----ELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINIT 113 (313)
T ss_pred cccCCceEEEEecchhhhh----hhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEE
Confidence 3344456677776664432 125778999999999998 56789999999999999999776532211000 0
Q ss_pred c---------CCCCcccceeeecC---------CCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEe
Q 023672 104 A---------KDQDSYEASLVVTE---------GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYR 165 (279)
Q Consensus 104 ~---------~~~~~~~~~~~~~~---------~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~ 165 (279)
. ...+..+..+.... ...+..++| +-++.+++.....|+|.|.....-+++..++
T Consensus 114 wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w-------~~~nd~Fflt~GlG~v~ILsypsLkpv~si~ 186 (313)
T KOG1407|consen 114 WSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISW-------NNSNDLFFLTNGLGCVEILSYPSLKPVQSIK 186 (313)
T ss_pred EcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeee-------cCCCCEEEEecCCceEEEEeccccccccccc
Confidence 0 00000000011000 011222222 2233344444444555555555555555566
Q ss_pred ccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC
Q 023672 166 AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS 244 (279)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d 244 (279)
.|.. .+.||.|+|+|+++++| .|..+.+||+.. +.+...+ ..+.-+|..+.||- +|++||+|++|
T Consensus 187 AH~s-----nCicI~f~p~GryfA~GsADAlvSLWD~~E----LiC~R~i----sRldwpVRTlSFS~-dg~~lASaSED 252 (313)
T KOG1407|consen 187 AHPS-----NCICIEFDPDGRYFATGSADALVSLWDVDE----LICERCI----SRLDWPVRTLSFSH-DGRMLASASED 252 (313)
T ss_pred cCCc-----ceEEEEECCCCceEeeccccceeeccChhH----hhhheee----ccccCceEEEEecc-CcceeeccCcc
Confidence 6554 78899999999999987 999999999985 2344444 67788999999999 99999999999
Q ss_pred CcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 245 QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 245 g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
..|-|=++.+|..+..++ ++++...++|+|.-
T Consensus 253 h~IDIA~vetGd~~~eI~-~~~~t~tVAWHPk~ 284 (313)
T KOG1407|consen 253 HFIDIAEVETGDRVWEIP-CEGPTFTVAWHPKR 284 (313)
T ss_pred ceEEeEecccCCeEEEee-ccCCceeEEecCCC
Confidence 999999999999999988 78899999999964
No 82
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=3.6e-25 Score=177.92 Aligned_cols=185 Identities=15% Similarity=0.225 Sum_probs=144.5
Q ss_pred ceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672 62 FLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 62 ~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (279)
.+..|.|.. +.++|||++..|.|.+||+..... .........|...+..+.|++. ...+
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r--------------nk~l~~f~EH~Rs~~~ldfh~t------ep~i 148 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIR--------------NKLLTVFNEHERSANKLDFHST------EPNI 148 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcccc--------------chhhhHhhhhccceeeeeeccC------CccE
Confidence 355678876 667999999999999999985210 0111134567789999999754 4459
Q ss_pred EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC-CCEEEEe-cCCeEEEEEccCCCCceeeeeeccccc
Q 023672 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (279)
Q Consensus 141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~ 218 (279)
|++|+.||+|++||++..+...++..... .|..+.|+|. +..++++ ..|.+.+||+|.+.+. ...+
T Consensus 149 liSGSQDg~vK~~DlR~~~S~~t~~~nSE-----SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-------~~k~ 216 (839)
T KOG0269|consen 149 LISGSQDGTVKCWDLRSKKSKSTFRSNSE-----SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC-------EKKL 216 (839)
T ss_pred EEecCCCceEEEEeeecccccccccccch-----hhhceeeccCCCceEEEecCCceEEEeeccCchhH-------HHHh
Confidence 99999999999999999888888877554 8999999997 4556666 7899999999986332 2223
Q ss_pred CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccCCCC
Q 023672 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSSAYT 279 (279)
Q Consensus 219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spdg~~ 279 (279)
.+|.++|.++.|+| ++.+||||+.|+.|+|||+.+++.-....- -..+|..++|-|+-+|
T Consensus 217 ~AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 217 TAHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred hcccCceEEEeecC-CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 79999999999999 999999999999999999987654333332 3458999999998653
No 83
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.2e-24 Score=171.93 Aligned_cols=216 Identities=19% Similarity=0.249 Sum_probs=166.5
Q ss_pred ceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672 31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY 110 (279)
Q Consensus 31 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 110 (279)
.+.-.++.|+...............+..|.+.|+.++...+++.|+++|.|-+|++|+...+.. +
T Consensus 44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~---------------~ 108 (735)
T KOG0308|consen 44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT---------------F 108 (735)
T ss_pred CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc---------------h
Confidence 3333667777654433221123346788999999999999999999999999999999985420 1
Q ss_pred cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe--eeEEEecc---Ccc-ccccceeeEEECCC
Q 023672 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL--LRCTYRAY---DAV-DEITAAFSVAFNPT 184 (279)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~--~~~~~~~~---~~~-~~~~~v~~~~~~~~ 184 (279)
.......|...|.++++- .++...+|+|+.|+.|++||++++. .+..+... ... ++..+|++++.++.
T Consensus 109 c~stir~H~DYVkcla~~------ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t 182 (735)
T KOG0308|consen 109 CMSTIRTHKDYVKCLAYI------AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT 182 (735)
T ss_pred hHhhhhcccchheeeeec------ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc
Confidence 112344567788888762 4577799999999999999999873 23222211 111 33348999999999
Q ss_pred CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672 185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 185 ~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
|..+++| ..+.+++||.++. +....+ .||...|.++-.++ +|..+++++.||+|++||+...+++.++..
T Consensus 183 ~t~ivsGgtek~lr~wDprt~----~kimkL----rGHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~v 253 (735)
T KOG0308|consen 183 GTIIVSGGTEKDLRLWDPRTC----KKIMKL----RGHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIV 253 (735)
T ss_pred ceEEEecCcccceEEeccccc----cceeee----eccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEe
Confidence 9888876 8999999999985 333344 69999999999999 999999999999999999999999999999
Q ss_pred cCCCEEEEEEccC
Q 023672 264 QEGGVTHVSKLSS 276 (279)
Q Consensus 264 ~~~~v~~~~~spd 276 (279)
|...|+++..+|+
T Consensus 254 H~e~VWaL~~~~s 266 (735)
T KOG0308|consen 254 HKEGVWALQSSPS 266 (735)
T ss_pred ccCceEEEeeCCC
Confidence 9999999998875
No 84
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.5e-24 Score=168.20 Aligned_cols=187 Identities=17% Similarity=0.248 Sum_probs=160.9
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+..|++.|.++.|+|...+++++-.+|.|.||+.++......... ...+|....|
T Consensus 8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV-----------------~~~PvRa~kf------- 63 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEV-----------------SEVPVRAAKF------- 63 (794)
T ss_pred HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeee-----------------cccchhhhee-------
Confidence 5566899999999999999999999999999999997655332211 1235555555
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
-+..+++++|+.|..|++|+.++++.+..+..|.. .|.+++.+|.-.+++++ .|-.|++||.... ..+.++
T Consensus 64 iaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-----yIR~iavHPt~P~vLtsSDDm~iKlW~we~~---wa~~qt 135 (794)
T KOG0276|consen 64 IARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-----YIRSIAVHPTLPYVLTSSDDMTIKLWDWENE---WACEQT 135 (794)
T ss_pred eeccceEEEecCCceEEEEecccceeeEEeecccc-----ceeeeeecCCCCeEEecCCccEEEEeeccCc---eeeeeE
Confidence 33566999999999999999999999999999987 99999999999999866 8899999999863 344455
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
+ .+|...|.+++|+|.+...+++++-|++|++|.+.+..+..++.+|..+|+++.+-|-|
T Consensus 136 f----eGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~g 195 (794)
T KOG0276|consen 136 F----EGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGG 195 (794)
T ss_pred E----cCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCC
Confidence 5 89999999999999888999999999999999999999999999999999999998865
No 85
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.9e-23 Score=149.08 Aligned_cols=202 Identities=15% Similarity=0.223 Sum_probs=151.6
Q ss_pred CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccc----------------cc-----------cCCCCccc
Q 023672 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNAC----------------SL-----------AKDQDSYE 111 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~----------------~~-----------~~~~~~~~ 111 (279)
-.+.|+++.|+++|.+|++++.|.+++|||..++......... .. +.-.++.-
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky 92 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY 92 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence 4567999999999999999999999999999887653222111 00 00111222
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG 191 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (279)
..+..+|...|..++. +|-+..+++++.|++|++||++..++...+..... ..++|.|.|-++|++
T Consensus 93 lRYF~GH~~~V~sL~~-------sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-------pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 93 LRYFPGHKKRVNSLSV-------SPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-------PIAAFDPEGLIFALA 158 (311)
T ss_pred EEEcCCCCceEEEEEe-------cCCCCeEEecccCCeEEeeEecCCCCceEEecCCC-------cceeECCCCcEEEEe
Confidence 2334456667777765 66778999999999999999998888777766543 358999999999977
Q ss_pred -cCCeEEEEEccCCC-CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCC--
Q 023672 192 -YNKSVRVFDVHRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG-- 267 (279)
Q Consensus 192 -~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-- 267 (279)
....|++||+|.-+ .++... .+. .+.....+.+.||| +|..|+.+...+.+++.|.-+|..+.++..+...
T Consensus 159 ~~~~~IkLyD~Rs~dkgPF~tf-~i~---~~~~~ew~~l~FS~-dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~ 233 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFDKGPFTTF-SIT---DNDEAEWTDLEFSP-DGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGN 233 (311)
T ss_pred cCCCeEEEEEecccCCCCceeE-ccC---CCCccceeeeEEcC-CCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCC
Confidence 55599999999753 333332 221 24456789999999 8999999999999999999999999999887542
Q ss_pred -EEEEEEccCCCC
Q 023672 268 -VTHVSKLSSAYT 279 (279)
Q Consensus 268 -v~~~~~spdg~~ 279 (279)
..+..|+|||+|
T Consensus 234 ~~~~a~ftPds~F 246 (311)
T KOG1446|consen 234 LPLSATFTPDSKF 246 (311)
T ss_pred cceeEEECCCCcE
Confidence 267889999985
No 86
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.93 E-value=5.8e-24 Score=173.32 Aligned_cols=190 Identities=18% Similarity=0.269 Sum_probs=158.0
Q ss_pred eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee
Q 023672 36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV 115 (279)
Q Consensus 36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (279)
+..||..++.... ..+.||.+.|.+++|..-+.+|++|+.|.++++||..++.+.. ..
T Consensus 230 l~~~~~~~~~~i~-----~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~-----------------~l 287 (537)
T KOG0274|consen 230 LHLWDLNNGYLIL-----TRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH-----------------SL 287 (537)
T ss_pred eEEeecccceEEE-----eeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE-----------------Ee
Confidence 3456655555443 1488999999999999878899999999999999999876532 33
Q ss_pred ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCC
Q 023672 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK 194 (279)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~ 194 (279)
..|...+.++.. ....+++|+.|.+|++|++.++..+..+..|.. +|+++.++ +.++++| .|+
T Consensus 288 ~gh~stv~~~~~---------~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~-----~V~~v~~~--~~~lvsgs~d~ 351 (537)
T KOG0274|consen 288 QGHTSSVRCLTI---------DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG-----PVNCVQLD--EPLLVSGSYDG 351 (537)
T ss_pred cCCCceEEEEEc---------cCceEeeccCCceEEEEeccCcceEEEeccccc-----cEEEEEec--CCEEEEEecCc
Confidence 457777877755 444888899999999999999999999998776 99999998 6777766 999
Q ss_pred eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEEE
Q 023672 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVSK 273 (279)
Q Consensus 195 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~ 273 (279)
+|++||..+. +++..+ .+|..+|.++.+.+ . ..+++|+.|++|++||+++. +++.++.+|..-|.++.+
T Consensus 352 ~v~VW~~~~~----~cl~sl----~gH~~~V~sl~~~~-~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~ 421 (537)
T KOG0274|consen 352 TVKVWDPRTG----KCLKSL----SGHTGRVYSLIVDS-E-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL 421 (537)
T ss_pred eEEEEEhhhc----eeeeee----cCCcceEEEEEecC-c-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc
Confidence 9999999973 555555 78999999998876 4 89999999999999999999 999999999887776654
No 87
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=8.6e-25 Score=159.94 Aligned_cols=212 Identities=10% Similarity=0.116 Sum_probs=170.2
Q ss_pred eeeEecCCCCcccceee--eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 35 PLIRFDVPPHRTYHFYN--QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
-+.+|+..++++..... ....+--|.++|.|+.|+.|...||+|+.||.|+||.+.++.+...
T Consensus 236 FiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRr--------------- 300 (508)
T KOG0275|consen 236 FIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRR--------------- 300 (508)
T ss_pred eeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHH---------------
Confidence 46789998888765322 2224455889999999999999999999999999999998876433
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG- 191 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 191 (279)
....|...|+++.| +.|+..+++++.|.++++.-+.+|++++.+++|.. .|+...|.++|..++++
T Consensus 301 -FdrAHtkGvt~l~F-------SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsS-----yvn~a~ft~dG~~iisaS 367 (508)
T KOG0275|consen 301 -FDRAHTKGVTCLSF-------SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSS-----YVNEATFTDDGHHIISAS 367 (508)
T ss_pred -hhhhhccCeeEEEE-------ccCcchhhcccccceEEEeccccchhHHHhcCccc-----cccceEEcCCCCeEEEec
Confidence 34456678888877 78899999999999999999999999999999987 89999999999999954
Q ss_pred cCCeEEEEEccCCCC-----------ceee-----------------------------eeecccccCCCCCceEEEEEc
Q 023672 192 YNKSVRVFDVHRPGR-----------DFEK-----------------------------YSTLKGNKEGQAGIMSAIAFS 231 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~-----------~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~s 231 (279)
.||+|++|+.++..- +... ...+... +...+...+++.|
T Consensus 368 sDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSG-kREgGdFi~~~lS 446 (508)
T KOG0275|consen 368 SDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSG-KREGGDFINAILS 446 (508)
T ss_pred CCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccC-CccCCceEEEEec
Confidence 999999999987310 0000 0000000 1123456678899
Q ss_pred cCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 232 PTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 232 p~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
| .|.++.+.++|+.++.|.+.+|.+..++..|+..|.+++-+|.
T Consensus 447 p-kGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPH 490 (508)
T KOG0275|consen 447 P-KGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPH 490 (508)
T ss_pred C-CCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcc
Confidence 9 9999999999999999999999999999999999999988875
No 88
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.5e-24 Score=162.42 Aligned_cols=200 Identities=15% Similarity=0.247 Sum_probs=156.1
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+.+|+..+..... ++.-..+.|.++.|..||++||.|...|.|+|||+.+... ...
T Consensus 49 rvqly~~~~~~~~k------~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~i-----------------LR~ 105 (487)
T KOG0310|consen 49 RVQLYSSVTRSVRK------TFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVI-----------------LRQ 105 (487)
T ss_pred EEEEEecchhhhhh------hHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHH-----------------HHH
Confidence 34455555444443 3445678899999999999999999999999999654211 113
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE-EEe-c
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI-FAG-Y 192 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~-~ 192 (279)
...|..++..+.|+|. ++..+++|+.|+.+++||+.+......+..|.. .|.|.+|+|-...+ ++| .
T Consensus 106 ~~ah~apv~~~~f~~~------d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD-----YVR~g~~~~~~~hivvtGsY 174 (487)
T KOG0310|consen 106 LYAHQAPVHVTKFSPQ------DNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD-----YVRCGDISPANDHIVVTGSY 174 (487)
T ss_pred HhhccCceeEEEeccc------CCeEEEecCCCceEEEEEcCCcEEEEEecCCcc-----eeEeeccccCCCeEEEecCC
Confidence 3457778999988765 677899999999999999999987667888877 99999999987654 466 9
Q ss_pred CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEE
Q 023672 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHV 271 (279)
Q Consensus 193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~ 271 (279)
||.|++||.+... .....+ .|..+|.++.+-| +|..+++++ ...|++||+.+| +.+..+..|...|+|+
T Consensus 175 Dg~vrl~DtR~~~---~~v~el-----nhg~pVe~vl~lp-sgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL 244 (487)
T KOG0310|consen 175 DGKVRLWDTRSLT---SRVVEL-----NHGCPVESVLALP-SGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCL 244 (487)
T ss_pred CceEEEEEeccCC---ceeEEe-----cCCCceeeEEEcC-CCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEE
Confidence 9999999999843 222233 7888999999999 989999987 456999999965 4556666699999999
Q ss_pred EEccCCC
Q 023672 272 SKLSSAY 278 (279)
Q Consensus 272 ~~spdg~ 278 (279)
++..++.
T Consensus 245 ~l~s~~~ 251 (487)
T KOG0310|consen 245 RLASDST 251 (487)
T ss_pred EeecCCc
Confidence 9998764
No 89
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.4e-24 Score=174.66 Aligned_cols=200 Identities=15% Similarity=0.213 Sum_probs=156.9
Q ss_pred eeeEecCCC---CcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672 35 PLIRFDVPP---HRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY 110 (279)
Q Consensus 35 ~~~~~d~~~---~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 110 (279)
.+.+||+.. .+++. .+..|+..|+++.|++ ...+|++||.||+|++||++......
T Consensus 111 ~i~vWdlnk~~rnk~l~------~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~-------------- 170 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLT------VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS-------------- 170 (839)
T ss_pred cEEEEecCccccchhhh------HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc--------------
Confidence 577888876 33333 6778999999999998 56789999999999999998653321
Q ss_pred cceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 111 EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 111 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
......+.|.++.|+|. .+..++++...|.+.+||++.. ++...+..|.. +|.|+.|+|++.+||
T Consensus 171 ---t~~~nSESiRDV~fsp~------~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~G-----pV~c~nwhPnr~~lA 236 (839)
T KOG0269|consen 171 ---TFRSNSESIRDVKFSPG------YGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNG-----PVLCLNWHPNREWLA 236 (839)
T ss_pred ---cccccchhhhceeeccC------CCceEEEecCCceEEEeeccCchhHHHHhhcccC-----ceEEEeecCCCceee
Confidence 22346678999999886 4779999999999999999975 45566667776 999999999999999
Q ss_pred Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC--CCcEEEEecCCC-eEEEEEeecC
Q 023672 190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNM-ELLYVLHGQE 265 (279)
Q Consensus 190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~--dg~i~~wd~~~~-~~~~~~~~~~ 265 (279)
+| .|+.|+|||+..+. . ....++ ....+|.+++|-|.....|++++. |-.|+|||++-. -+..++..|.
T Consensus 237 TGGRDK~vkiWd~t~~~-~-~~~~tI-----nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~ 309 (839)
T KOG0269|consen 237 TGGRDKMVKIWDMTDSR-A-KPKHTI-----NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT 309 (839)
T ss_pred ecCCCccEEEEeccCCC-c-cceeEE-----eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC
Confidence 76 99999999998632 1 222222 224589999999977778888764 778999999754 4567888899
Q ss_pred CCEEEEEEcc
Q 023672 266 GGVTHVSKLS 275 (279)
Q Consensus 266 ~~v~~~~~sp 275 (279)
..++.++|-.
T Consensus 310 ~~vt~i~W~~ 319 (839)
T KOG0269|consen 310 DSVTGIAWDS 319 (839)
T ss_pred ccccceeccC
Confidence 9999998865
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.92 E-value=1.7e-23 Score=147.76 Aligned_cols=163 Identities=18% Similarity=0.270 Sum_probs=132.8
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+.+|++.|..+-|....+.+++++.|++|++||.+++...+. ..-..+|.++. +
T Consensus 138 E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~s------------------L~~~s~VtSlE-------v 192 (334)
T KOG0278|consen 138 EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQS------------------LEFNSPVTSLE-------V 192 (334)
T ss_pred hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEE------------------EecCCCCccee-------e
Confidence 6889999999999999888999999999999999998754321 22223555554 4
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+++|++|.++ ..+.|.+||..+-..++.+..+. .|.+.+++|+...+++| .|..++.||..++ .....
T Consensus 193 s~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~------nV~SASL~P~k~~fVaGged~~~~kfDy~Tg-eEi~~--- 261 (334)
T KOG0278|consen 193 SQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPC------NVESASLHPKKEFFVAGGEDFKVYKFDYNTG-EEIGS--- 261 (334)
T ss_pred ccCCCEEEEe-cCceeEEeccccccceeeccCcc------ccccccccCCCceEEecCcceEEEEEeccCC-ceeee---
Confidence 7888877665 46679999999999888888776 78899999998777776 9999999999995 32222
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL 257 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~ 257 (279)
..++|.++|.|+.|+| +|...++|++||+|+||.+..++.
T Consensus 262 ---~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 262 ---YNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ---cccCCCCceEEEEECC-CCceeeccCCCceEEEEEecCCCc
Confidence 1279999999999999 999999999999999999876553
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=4.9e-23 Score=162.61 Aligned_cols=199 Identities=15% Similarity=0.233 Sum_probs=160.9
Q ss_pred eeeEecCCCCcccceeeeeeccCC-CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSI-PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
.+.+||....+... .+.+ |...|-+++|+ +..+.+|+.|+.|..+|++.......
T Consensus 240 ~v~iwD~~~~k~~~------~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~---------------- 295 (484)
T KOG0305|consen 240 TVQIWDVKEQKKTR------TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS---------------- 295 (484)
T ss_pred eEEEEehhhccccc------cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh----------------
Confidence 56788877776655 5666 99999999999 66789999999999999986533111
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEE--
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFA-- 190 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-- 190 (279)
...+|...|..+.| ++++.++|+|+.|+.+.|||.....++..+..|.. .|.+++|+|-. .+||+
T Consensus 296 ~~~~H~qeVCgLkw-------s~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~a-----AVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 296 TLQGHRQEVCGLKW-------SPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTA-----AVKALAWCPWQSGLLATGG 363 (484)
T ss_pred hhhcccceeeeeEE-------CCCCCeeccCCCccceEeccCCCccccEEEeccce-----eeeEeeeCCCccCceEEcC
Confidence 24567788999988 77999999999999999999988888888888887 99999999964 56664
Q ss_pred e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE--eCCCcEEEEecCCCeEEEEEeecCCC
Q 023672 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG--SYSQTSAIYREDNMELLYVLHGQEGG 267 (279)
Q Consensus 191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~--~~dg~i~~wd~~~~~~~~~~~~~~~~ 267 (279)
| .|+.|++||..++ . .+..+ .-...|+++.|++ ...-|+++ -.++.|.||+..+.+++..+.+|...
T Consensus 364 Gs~D~~i~fwn~~~g-~---~i~~v-----dtgsQVcsL~Wsk-~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~R 433 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTG-A---RIDSV-----DTGSQVCSLIWSK-KYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSR 433 (484)
T ss_pred CCcccEEEEEEcCCC-c---Eeccc-----ccCCceeeEEEcC-CCCEEEEecCCCCCcEEEEeccccceeeeecCCcce
Confidence 3 7999999999984 2 22222 2356799999999 55444443 34667999999999999999999999
Q ss_pred EEEEEEccCCCC
Q 023672 268 VTHVSKLSSAYT 279 (279)
Q Consensus 268 v~~~~~spdg~~ 279 (279)
|..+++||||.+
T Consensus 434 Vl~la~SPdg~~ 445 (484)
T KOG0305|consen 434 VLYLALSPDGET 445 (484)
T ss_pred eEEEEECCCCCE
Confidence 999999999864
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.91 E-value=1.8e-23 Score=152.02 Aligned_cols=182 Identities=14% Similarity=0.216 Sum_probs=147.2
Q ss_pred eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
...+++..|.+.|+++.|+|....|++|+.|++|++||+......... ..+....+|.++.|
T Consensus 163 PvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~---------------K~~qd~~~vrsiSf--- 224 (430)
T KOG0640|consen 163 PVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF---------------KVFQDTEPVRSISF--- 224 (430)
T ss_pred ceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH---------------HHhhccceeeeEee---
Confidence 345688899999999999999999999999999999999854322111 23345568888877
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~ 209 (279)
+|.|.+|+.|....++++||+++-++...-. ....+...|+++.+++.+++.+++ .||.|++||--.+ +
T Consensus 225 ----HPsGefllvgTdHp~~rlYdv~T~Qcfvsan--Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~----r 294 (430)
T KOG0640|consen 225 ----HPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN--PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSN----R 294 (430)
T ss_pred ----cCCCceEEEecCCCceeEEeccceeEeeecC--cccccccceeEEEecCCccEEEEeccCCcEEeeccccH----H
Confidence 6789999999999999999999987755443 233445589999999999988866 9999999998764 5
Q ss_pred eeeecccccCCCC-CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672 210 KYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 210 ~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
++.++. .+|. ..|++..|.. ++.++++.+.|..+++|.+.+++++..+.+.
T Consensus 295 Cv~t~~---~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 295 CVRTIG---NAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred HHHHHH---hhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 555554 3454 4799999999 9999999999999999999999998887654
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.8e-23 Score=152.65 Aligned_cols=212 Identities=17% Similarity=0.261 Sum_probs=154.7
Q ss_pred eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeC------CCCccccccc-----cc---
Q 023672 36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSL------PENGISYDVN-----AC--- 101 (279)
Q Consensus 36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~------~~~~~~~~~~-----~~--- 101 (279)
..+|.++++.++. .+.||.+.|++++|++.+.++++++.|++-.||.. .......... .+
T Consensus 172 A~iWs~Esg~CL~------~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe 245 (481)
T KOG0300|consen 172 ARIWSLESGACLA------TYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDE 245 (481)
T ss_pred eeEEeecccccee------eecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccc
Confidence 3577777777766 78999999999999999999999999999999983 2211100000 00
Q ss_pred --cccC---CCCc----ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcccc
Q 023672 102 --SLAK---DQDS----YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE 172 (279)
Q Consensus 102 --~~~~---~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 172 (279)
.... ..+. ....-..+|...|.+..| -..|+.+++++.|.+..+||+++++.+..+.+|..
T Consensus 246 ~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW-------L~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~--- 315 (481)
T KOG0300|consen 246 HNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW-------LAGGQQMVTASWDRTANLWDVETGEVVNILTGHDS--- 315 (481)
T ss_pred cccccccccccCCceeeeeeeeeeccccceEehhh-------hcCcceeeeeeccccceeeeeccCceeccccCcch---
Confidence 0000 0010 001112235556666666 45788999999999999999999999999999987
Q ss_pred ccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 173 ITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
..+.++-+|..++++++ .|.+.++||++.. +.....+ .+|...|+++.|.. + ..+++|+.|.+|++||
T Consensus 316 --ELtHcstHptQrLVvTsSrDtTFRLWDFRea---I~sV~VF----QGHtdtVTS~vF~~-d-d~vVSgSDDrTvKvWd 384 (481)
T KOG0300|consen 316 --ELTHCSTHPTQRLVVTSSRDTTFRLWDFREA---IQSVAVF----QGHTDTVTSVVFNT-D-DRVVSGSDDRTVKVWD 384 (481)
T ss_pred --hccccccCCcceEEEEeccCceeEeccchhh---cceeeee----cccccceeEEEEec-C-CceeecCCCceEEEee
Confidence 78889999999988855 9999999999852 2233333 89999999999987 3 5799999999999999
Q ss_pred cCCCe-EEEEEeecCCCEEEEEEcc
Q 023672 252 EDNME-LLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 252 ~~~~~-~~~~~~~~~~~v~~~~~sp 275 (279)
+++.. ++.++. ...+++.++.+.
T Consensus 385 LrNMRsplATIR-tdS~~NRvavs~ 408 (481)
T KOG0300|consen 385 LRNMRSPLATIR-TDSPANRVAVSK 408 (481)
T ss_pred eccccCcceeee-cCCccceeEeec
Confidence 99864 566665 344555555554
No 94
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=2.8e-23 Score=169.32 Aligned_cols=195 Identities=16% Similarity=0.286 Sum_probs=162.0
Q ss_pred cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCc
Q 023672 30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDS 109 (279)
Q Consensus 30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 109 (279)
+.....+++||..++.+.+ .+.+|.+.|.++...+ ..+++|+.|.+|++|++.++....
T Consensus 267 gS~D~t~rvWd~~sg~C~~------~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~------------- 325 (537)
T KOG0274|consen 267 GSTDKTERVWDCSTGECTH------SLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLN------------- 325 (537)
T ss_pred EecCCcEEeEecCCCcEEE------EecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcceEE-------------
Confidence 3445578899999999988 7889999999998764 467889999999999999765422
Q ss_pred ccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
+..+|..+|.++.. ++.++++|+.|++|++||+.+++++..+..|.. .|+++.+.+. ..++
T Consensus 326 ----l~~~h~~~V~~v~~---------~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~-----~V~sl~~~~~-~~~~ 386 (537)
T KOG0274|consen 326 ----LLRGHTGPVNCVQL---------DEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG-----RVYSLIVDSE-NRLL 386 (537)
T ss_pred ----EeccccccEEEEEe---------cCCEEEEEecCceEEEEEhhhceeeeeecCCcc-----eEEEEEecCc-ceEE
Confidence 23338889999976 577999999999999999999999999999887 9999988776 6777
Q ss_pred Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCC
Q 023672 190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGG 267 (279)
Q Consensus 190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~ 267 (279)
+| .|+.|++||+++.. ++..++ .+|..-+.++.+ .+.+|++++.|++|++||..+++++.++.+ |.+.
T Consensus 387 Sgs~D~~IkvWdl~~~~---~c~~tl----~~h~~~v~~l~~---~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~ 456 (537)
T KOG0274|consen 387 SGSLDTTIKVWDLRTKR---KCIHTL----QGHTSLVSSLLL---RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGG 456 (537)
T ss_pred eeeeccceEeecCCchh---hhhhhh----cCCccccccccc---ccceeEeccccccEEEeecccCceeeeeccCCccc
Confidence 65 99999999999831 344444 788888877666 457999999999999999999999999998 6688
Q ss_pred EEEEEEc
Q 023672 268 VTHVSKL 274 (279)
Q Consensus 268 v~~~~~s 274 (279)
|..+++.
T Consensus 457 v~~l~~~ 463 (537)
T KOG0274|consen 457 VSALALG 463 (537)
T ss_pred EEEeecC
Confidence 8888774
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=2.7e-24 Score=151.09 Aligned_cols=192 Identities=20% Similarity=0.258 Sum_probs=149.2
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
...+|++.|..+...-.|++|||++.|++|+|+..+++... ....-..+|.++|..+.| +-
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s--------------~ll~~L~Gh~GPVwqv~w-----ah 66 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS--------------KLLAELTGHSGPVWKVAW-----AH 66 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc--------------eeeeEecCCCCCeeEEee-----cc
Confidence 45679999999999999999999999999999999865321 111234568889999999 22
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeE--EEeccCccccccceeeEEECCCC--CEEEEe-cCCeEEEEEccCCCCcee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTG--TKIFAG-YNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~d~~i~~~d~~~~~~~~~ 209 (279)
-.-|.+||+++.||.|.||.-.+++-.+ ....|. ..|++++|.|.+ -.|+++ .||.|.|.+.+..+.
T Consensus 67 Pk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~-----~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~--- 138 (299)
T KOG1332|consen 67 PKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHS-----ASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG--- 138 (299)
T ss_pred cccCcEeeEeecCceEEEEecCCCchhhhhhhhhhc-----ccceeecccccccceEEEEeeCCCcEEEEEEcCCCC---
Confidence 2368899999999999999988885332 233333 389999999974 556665 999999999987411
Q ss_pred eeeecccccCCCCCceEEEEEccCC---C-----------cEEEEEeCCCcEEEEecCCCe--EEEEEeecCCCEEEEEE
Q 023672 210 KYSTLKGNKEGQAGIMSAIAFSPTH---T-----------GMLAIGSYSQTSAIYREDNME--LLYVLHGQEGGVTHVSK 273 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~~---~-----------~~l~~~~~dg~i~~wd~~~~~--~~~~~~~~~~~v~~~~~ 273 (279)
.........|.-.|++++|.| . | ..|++|+.|+.|+||+..+++ +-.+|.+|.+.|+.++|
T Consensus 139 --w~t~ki~~aH~~GvnsVswap-a~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAw 215 (299)
T KOG1332|consen 139 --WTTSKIVFAHEIGVNSVSWAP-ASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAW 215 (299)
T ss_pred --ccchhhhhccccccceeeecC-cCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhh
Confidence 111222268888999999999 4 3 459999999999999998763 44569999999999999
Q ss_pred ccC
Q 023672 274 LSS 276 (279)
Q Consensus 274 spd 276 (279)
.|.
T Consensus 216 aP~ 218 (299)
T KOG1332|consen 216 APS 218 (299)
T ss_pred ccc
Confidence 995
No 96
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.91 E-value=3.2e-23 Score=157.30 Aligned_cols=194 Identities=16% Similarity=0.276 Sum_probs=146.4
Q ss_pred eeeeEecCCCCccc-ceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672 34 WPLIRFDVPPHRTY-HFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 34 ~~~~~~d~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
-.+..||+.....- ........+.+|.+.|..++|++ +...|++++.|+.+.|||++++.. ..
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~---------------~~ 264 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS---------------KP 264 (422)
T ss_pred CcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC---------------CC
Confidence 35677777654431 22334447889999999999999 566889999999999999996311 11
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCC-EEE
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGT-KIF 189 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~ 189 (279)
......|...|.+++|+|. ++..||+|+.|++|.+||+|+. +++.++..|.. .|.++.|+|... .|+
T Consensus 265 ~~~~~ah~~~vn~~~fnp~------~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~d-----ev~~V~WSPh~etvLA 333 (422)
T KOG0264|consen 265 SHSVKAHSAEVNCVAFNPF------NEFILATGSADKTVALWDLRNLNKPLHTFEGHED-----EVFQVEWSPHNETVLA 333 (422)
T ss_pred cccccccCCceeEEEeCCC------CCceEEeccCCCcEEEeechhcccCceeccCCCc-----ceEEEEeCCCCCceeE
Confidence 1244567889999999876 5779999999999999999985 45677777776 999999999865 455
Q ss_pred E-ecCCeEEEEEccCCCCcee------eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 190 A-GYNKSVRVFDVHRPGRDFE------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 190 ~-~~d~~i~~~d~~~~~~~~~------~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
+ |.|+.+.|||+..-+.... -...+.....||...|..+.|+|...-.+++.++|+.+.||.+.
T Consensus 334 SSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 334 SSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred ecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 4 4999999999986432210 00011112279999999999999667788899999999999975
No 97
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.91 E-value=1.7e-23 Score=155.64 Aligned_cols=189 Identities=18% Similarity=0.313 Sum_probs=142.5
Q ss_pred eeeEecCCCCccc----------ceeeeeeccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccc
Q 023672 35 PLIRFDVPPHRTY----------HFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSL 103 (279)
Q Consensus 35 ~~~~~d~~~~~~~----------~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 103 (279)
.+.+|++...... ...++..+..+|.+.=.+++|||- .-.|++|.--+.|++|...++.......
T Consensus 176 ~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~---- 251 (440)
T KOG0302|consen 176 RVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR---- 251 (440)
T ss_pred cEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCc----
Confidence 5677877532211 123344578899999999999992 2358888888899999998765432211
Q ss_pred cCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEE--EeccCccccccceeeEEE
Q 023672 104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCT--YRAYDAVDEITAAFSVAF 181 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~v~~~~~ 181 (279)
-...|...|-+++|+|. ....|++|+.||+|+|||++.+..... .+.|.. .|+.|+|
T Consensus 252 ----------Pf~gH~~SVEDLqWSpt------E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s-----DVNVISW 310 (440)
T KOG0302|consen 252 ----------PFTGHTKSVEDLQWSPT------EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS-----DVNVISW 310 (440)
T ss_pred ----------cccccccchhhhccCCc------cCceEEeeecCceEEEEEecCCCccceeEeeccCC-----ceeeEEc
Confidence 22347789999999775 456899999999999999999833222 244443 8999999
Q ss_pred CCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 182 NPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 182 ~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
+....+|++| .||+++|||+|.- +..+.+..+ +-|..+|+++.|+|.+...|++++.|..|.|||+.
T Consensus 311 nr~~~lLasG~DdGt~~iwDLR~~-~~~~pVA~f----k~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 311 NRREPLLASGGDDGTLSIWDLRQF-KSGQPVATF----KYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred cCCcceeeecCCCceEEEEEhhhc-cCCCcceeE----EeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9998888887 8999999999972 222333344 78999999999999888899999999999999985
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=4.7e-23 Score=144.94 Aligned_cols=215 Identities=17% Similarity=0.201 Sum_probs=159.2
Q ss_pred cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCC
Q 023672 30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107 (279)
Q Consensus 30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 107 (279)
-...-.+++|.+...... ....++.||.++|..++|.. .|.+||+++.||.|.||.-.+++..+..
T Consensus 29 csSD~tVkIf~v~~n~~s---~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~--------- 96 (299)
T KOG1332|consen 29 CSSDGTVKIFEVRNNGQS---KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAY--------- 96 (299)
T ss_pred ecCCccEEEEEEcCCCCc---eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhh---------
Confidence 334446778887766542 23448999999999999966 8999999999999999998877442211
Q ss_pred CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-e--eeEEEeccCccccccceeeEEECCC
Q 023672 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-L--LRCTYRAYDAVDEITAAFSVAFNPT 184 (279)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-~--~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (279)
....|...|++++|.| +..|-.|++++.||.|.+.+.++. . ..+....|.. .|++++|.|.
T Consensus 97 ------e~~~h~~SVNsV~wap-----heygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~-----GvnsVswapa 160 (299)
T KOG1332|consen 97 ------EHAAHSASVNSVAWAP-----HEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEI-----GVNSVSWAPA 160 (299)
T ss_pred ------hhhhhcccceeecccc-----cccceEEEEeeCCCcEEEEEEcCCCCccchhhhhcccc-----ccceeeecCc
Confidence 2345677999999966 456779999999999999998764 1 2223334444 8899999986
Q ss_pred ---C-----------CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC---CcEEEEEeCCCc
Q 023672 185 ---G-----------TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH---TGMLAIGSYSQT 246 (279)
Q Consensus 185 ---~-----------~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~---~~~l~~~~~dg~ 246 (279)
| +.|++| .|..|+||+...+ .. .+...+.+|.+.|+.++|.|.. ...|+++++||+
T Consensus 161 ~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~--~w----~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~ 234 (299)
T KOG1332|consen 161 SAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD--SW----KLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGT 234 (299)
T ss_pred CCCccccccCcccccceeeccCCccceeeeecCCc--ch----hhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCc
Confidence 4 457755 9999999999874 12 2223348999999999999933 247999999999
Q ss_pred EEEEecCCC-e--EEEEEeecCCCEEEEEEccCCC
Q 023672 247 SAIYREDNM-E--LLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 247 i~~wd~~~~-~--~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+.||..+.- + ....++.....++.+.||+.|.
T Consensus 235 viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn 269 (299)
T KOG1332|consen 235 VIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGN 269 (299)
T ss_pred EEEEEecCccCcccccccccCCcceEEEEEecccc
Confidence 999987622 1 1223444567899999999885
No 99
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.91 E-value=6.9e-23 Score=164.57 Aligned_cols=202 Identities=13% Similarity=0.275 Sum_probs=160.7
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+.+|+..+.++.+. +. .+.+.+..|.|.++++++|...|.+.+||+....... .
T Consensus 395 SikiWn~~t~kciRT------i~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E-----------------t 449 (888)
T KOG0306|consen 395 SIKIWNRDTLKCIRT------IT--CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVE-----------------T 449 (888)
T ss_pred cEEEEEccCcceeEE------ec--cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhh-----------------h
Confidence 467888888877663 22 2368899999999999999999999999998543321 2
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-----CeeeEEEecc--CccccccceeeEEECCCCCE
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAY--DAVDEITAAFSVAFNPTGTK 187 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-----~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~ 187 (279)
...|.+.+++++. +||+..+++|+.|.+|++||..- +...+.+..+ ....-...|.|+.+|||+++
T Consensus 450 i~AHdgaIWsi~~-------~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~ 522 (888)
T KOG0306|consen 450 IRAHDGAIWSISL-------SPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL 522 (888)
T ss_pred hhccccceeeeee-------cCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence 2356778888865 88999999999999999999752 2111112111 11122237899999999999
Q ss_pred EEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC
Q 023672 188 IFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266 (279)
Q Consensus 188 l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 266 (279)
++++ .|.+++||-+.+- +..-.+ .||.-||.|+..|| ++.+++|||.|..|++|-+.-|.|...+-+|.+
T Consensus 523 LaVsLLdnTVkVyflDtl----KFflsL----YGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFGDCHKS~fAHdD 593 (888)
T KOG0306|consen 523 LAVSLLDNTVKVYFLDTL----KFFLSL----YGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDD 593 (888)
T ss_pred EEEEeccCeEEEEEecce----eeeeee----cccccceeEEeccC-CcCeEEeccCCCceEEeccccchhhhhhhcccC
Confidence 9998 9999999999882 333333 79999999999999 999999999999999999999999999999999
Q ss_pred CEEEEEEccCC
Q 023672 267 GVTHVSKLSSA 277 (279)
Q Consensus 267 ~v~~~~~spdg 277 (279)
.|.++.|-|..
T Consensus 594 Svm~V~F~P~~ 604 (888)
T KOG0306|consen 594 SVMSVQFLPKT 604 (888)
T ss_pred ceeEEEEcccc
Confidence 99999999964
No 100
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=9.4e-23 Score=153.41 Aligned_cols=193 Identities=16% Similarity=0.204 Sum_probs=153.1
Q ss_pred eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
...++..|++.|+-+.||++|++||+++.|.+..+|++....... ......+|..+|.-+.|
T Consensus 216 t~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~k--------------l~~tlvgh~~~V~yi~w---- 277 (519)
T KOG0293|consen 216 TWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFK--------------LKKTLVGHSQPVSYIMW---- 277 (519)
T ss_pred hhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCccee--------------eeeeeecccCceEEEEE----
Confidence 344788999999999999999999999999999999987432210 11134567778888888
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~ 210 (279)
|||.+++++|+.|..+.+||+.+|.....+..... ..+.+++|.|||..+++| .|+.+..||+... ....
T Consensus 278 ---SPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~----~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn--~~~~ 348 (519)
T KOG0293|consen 278 ---SPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLG----FSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN--ILGN 348 (519)
T ss_pred ---CCCCCeEEecCchHheeeccCCcchhhhhcccCcC----CCcceeEEccCCceeEecCCCCcEEEecCCcc--hhhc
Confidence 78999999999999999999999998877765411 278899999999999987 9999999999852 2222
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
..- .....|.+++.++ +|.++++.+.|..|++++..+......+. -..+|+++..|.||+|
T Consensus 349 W~g------vr~~~v~dlait~-Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~ 409 (519)
T KOG0293|consen 349 WEG------VRDPKVHDLAITY-DGKYVLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKL 409 (519)
T ss_pred ccc------cccceeEEEEEcC-CCcEEEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcE
Confidence 111 1124589999999 88899888999999999998776665444 4568999999999985
No 101
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.9e-23 Score=154.65 Aligned_cols=231 Identities=15% Similarity=0.187 Sum_probs=167.0
Q ss_pred hcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc-------
Q 023672 27 ENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN------- 99 (279)
Q Consensus 27 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------- 99 (279)
...+...-.+.+||+....+.. ++.+|.+.|.+|+++. ..+++++.|.+|+.|.++......-..
T Consensus 82 ~aSGs~DG~VkiWnlsqR~~~~------~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gI 153 (433)
T KOG0268|consen 82 VASGSCDGEVKIWNLSQRECIR------TFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGI 153 (433)
T ss_pred hhccccCceEEEEehhhhhhhh------eeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccc
Confidence 4445666688999999988877 7889999999999987 678899999999999976532100000
Q ss_pred ----cccccCCCCcccceeeecCCCceEEEEeeCc---ccccCCCC-cEEEEecCCCcEEEEECCCCeeeEEEeccCccc
Q 023672 100 ----ACSLAKDQDSYEASLVVTEGESVYDFCWFPH---MSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD 171 (279)
Q Consensus 100 ----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~ 171 (279)
........+..+.........++.++.|.-+ ++.|+|.. ..|++|..|+.|.+||++++.++..+...-
T Consensus 154 dh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~m--- 230 (433)
T KOG0268|consen 154 DHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTM--- 230 (433)
T ss_pred ccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeec---
Confidence 0000111112222333445557777777543 44566654 467788899999999999999887766543
Q ss_pred cccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672 172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 250 (279)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w 250 (279)
..+.|+|+|.+-.++++ .|..++.||++.-..+. ....+|.++|.+++||| .|+-+++||.|.+|+||
T Consensus 231 ---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~-------~v~~dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf 299 (433)
T KOG0268|consen 231 ---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPL-------NVHKDHVSAVMDVDFSP-TGQEFVSGSYDKSIRIF 299 (433)
T ss_pred ---cccceecCccccceeeccccccceehhhhhhcccc-------hhhcccceeEEEeccCC-CcchhccccccceEEEe
Confidence 45689999966555566 99999999999743333 22378999999999999 89999999999999999
Q ss_pred ecCCCeEEEEEee-cCCCEEEEEEccCCCC
Q 023672 251 REDNMELLYVLHG-QEGGVTHVSKLSSAYT 279 (279)
Q Consensus 251 d~~~~~~~~~~~~-~~~~v~~~~~spdg~~ 279 (279)
..+.+.....+.. -...|.++.||.|.+|
T Consensus 300 ~~~~~~SRdiYhtkRMq~V~~Vk~S~Dsky 329 (433)
T KOG0268|consen 300 PVNHGHSRDIYHTKRMQHVFCVKYSMDSKY 329 (433)
T ss_pred ecCCCcchhhhhHhhhheeeEEEEeccccE
Confidence 9988765433321 2346999999999886
No 102
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.91 E-value=6.2e-23 Score=170.79 Aligned_cols=194 Identities=16% Similarity=0.219 Sum_probs=151.9
Q ss_pred CCceEEEEEccCCCeEEEee--CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672 60 NNFLKGIKWSPDGSSFLTSS--EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (279)
...|.++..+|||..++||+ .||.++||+.+.-......... .-.........|.+.|.++.| +||
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~-----~l~k~l~~m~~h~~sv~CVR~-------S~d 80 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE-----NLPKHLCTMDDHDGSVNCVRF-------SPD 80 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc-----ccchhheeeccccCceeEEEE-------CCC
Confidence 45699999999999999999 8999999998632110000000 001112234567779999988 889
Q ss_pred CcEEEEecCCCcEEEEECCC-------C-----------eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEE
Q 023672 138 SCVFASTTRDHPIHLWDATT-------G-----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~~~-------~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~ 198 (279)
|++||+|+.|+.|.+|+... + +.+..+..|.. .|..++|+|++.+++++ .|++|.+
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~-----DV~Dv~Wsp~~~~lvS~s~DnsVii 155 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDS-----DVLDVNWSPDDSLLVSVSLDNSVII 155 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCC-----ccceeccCCCccEEEEecccceEEE
Confidence 99999999999999999872 1 24566666665 89999999999999965 9999999
Q ss_pred EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC------CCEEEEE
Q 023672 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE------GGVTHVS 272 (279)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~------~~v~~~~ 272 (279)
|+.++. +....+ .+|.+.|-.+.|.| -|++|++-+.|++|+||++.+......+..+- ...+.+.
T Consensus 156 wn~~tF----~~~~vl----~~H~s~VKGvs~DP-~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlS 226 (942)
T KOG0973|consen 156 WNAKTF----ELLKVL----RGHQSLVKGVSWDP-IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLS 226 (942)
T ss_pred Eccccc----eeeeee----ecccccccceEECC-ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecc
Confidence 999983 344444 79999999999999 99999999999999999988877777776543 2578899
Q ss_pred EccCCCC
Q 023672 273 KLSSAYT 279 (279)
Q Consensus 273 ~spdg~~ 279 (279)
|||||+|
T Consensus 227 WSPDG~~ 233 (942)
T KOG0973|consen 227 WSPDGHH 233 (942)
T ss_pred cCCCcCe
Confidence 9999986
No 103
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.91 E-value=2.6e-22 Score=151.86 Aligned_cols=206 Identities=16% Similarity=0.210 Sum_probs=159.0
Q ss_pred eeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672 32 YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 32 ~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
....+++|..+...... ....|..+|+.+..+|.|.||++++.||+....|++++.....
T Consensus 281 ad~~i~vws~~~~s~~~------~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~-------------- 340 (506)
T KOG0289|consen 281 ADEIIRVWSVPLSSEPT------SSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTV-------------- 340 (506)
T ss_pred CcceEEeeccccccCcc------ccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEE--------------
Confidence 34456777776655433 6778999999999999999999999999999999997643210
Q ss_pred ceeee-cCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672 112 ASLVV-TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (279)
Q Consensus 112 ~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (279)
... ...-.+++. +|+|||.+|.+|..|+.|++||+.++..+..|.+|.. +|..++|+.+|.++++
T Consensus 341 --vs~~~s~v~~ts~-------~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-----~vk~i~FsENGY~Lat 406 (506)
T KOG0289|consen 341 --VSDETSDVEYTSA-------AFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-----PVKAISFSENGYWLAT 406 (506)
T ss_pred --EeeccccceeEEe-------eEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-----ceeEEEeccCceEEEE
Confidence 111 111234555 4588999999999999999999999998999988886 9999999999999996
Q ss_pred e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC--CCeEEEEEeecCCC
Q 023672 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED--NMELLYVLHGQEGG 267 (279)
Q Consensus 191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~--~~~~~~~~~~~~~~ 267 (279)
+ .|+.|++||+|.. +.++.+.. .....+.++.|.+ .|.+|+.++.|=.|++++-. ++.++..+..|.+.
T Consensus 407 ~add~~V~lwDLRKl-~n~kt~~l------~~~~~v~s~~fD~-SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~ 478 (506)
T KOG0289|consen 407 AADDGSVKLWDLRKL-KNFKTIQL------DEKKEVNSLSFDQ-SGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGL 478 (506)
T ss_pred EecCCeEEEEEehhh-cccceeec------cccccceeEEEcC-CCCeEEeecceeEEEEEecccccceeeehhhhcccc
Confidence 6 8899999999973 33333211 2223699999999 99999999877666666633 56788888888888
Q ss_pred EEEEEEccCCCC
Q 023672 268 VTHVSKLSSAYT 279 (279)
Q Consensus 268 v~~~~~spdg~~ 279 (279)
.+++.|..+.+|
T Consensus 479 st~v~Fg~~aq~ 490 (506)
T KOG0289|consen 479 STGVRFGEHAQY 490 (506)
T ss_pred cceeeecccceE
Confidence 888888766543
No 104
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.91 E-value=1.8e-22 Score=150.20 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=150.3
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC---CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
.+++||..-.... ++.||.++|.+++|--.. ..|++++.|.++++|.++.+........
T Consensus 126 ~~riWd~~Gk~~~-------~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~----------- 187 (423)
T KOG0313|consen 126 TSRIWDLKGKSIK-------TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALK----------- 187 (423)
T ss_pred eeEEEecCCceEE-------EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHh-----------
Confidence 5566766544332 788999999988884422 3699999999999999987644211100
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-------------------------CeeeEEEec
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-------------------------GLLRCTYRA 166 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-------------------------~~~~~~~~~ 166 (279)
...+|...|.++.- .+++..+++|+.|..|++|+..+ +.++..+.+
T Consensus 188 --~~~GHk~~V~sVsv-------~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G 258 (423)
T KOG0313|consen 188 --VCRGHKRSVDSVSV-------DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG 258 (423)
T ss_pred --HhcccccceeEEEe-------cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence 11267778888865 77899999999999999999321 123334445
Q ss_pred cCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc
Q 023672 167 YDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT 246 (279)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~ 246 (279)
|.. +|.++.|++.+..+.++-|.+|+.||+.+++. ...+ .-...+.++..+| ...+|++|+.|..
T Consensus 259 Ht~-----~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~----~~~~-----~~~ksl~~i~~~~-~~~Ll~~gssdr~ 323 (423)
T KOG0313|consen 259 HTE-----PVSSVVWSDATVIYSVSWDHTIKVWDLETGGL----KSTL-----TTNKSLNCISYSP-LSKLLASGSSDRH 323 (423)
T ss_pred ccc-----ceeeEEEcCCCceEeecccceEEEEEeecccc----eeee-----ecCcceeEeeccc-ccceeeecCCCCc
Confidence 554 99999999944433356999999999998532 2222 1134689999999 8999999999999
Q ss_pred EEEEecCCCe---EEEEEeecCCCEEEEEEccCCC
Q 023672 247 SAIYREDNME---LLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 247 i~~wd~~~~~---~~~~~~~~~~~v~~~~~spdg~ 278 (279)
|++||.|++. ...++.+|.++|.++.|+|..-
T Consensus 324 irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~ 358 (423)
T KOG0313|consen 324 IRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNE 358 (423)
T ss_pred eeecCCCCCCCceeEEeeecchhhhhheecCCCCc
Confidence 9999999763 4578999999999999999754
No 105
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.5e-21 Score=136.27 Aligned_cols=202 Identities=19% Similarity=0.281 Sum_probs=140.3
Q ss_pred CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
-..+|.+++|+|.|.+.++|+...+.+|--...-.... ..................+|.+.|++.+| +|+|
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r--~~hea~~~pp~v~~kr~khhkgsiyc~~w-------s~~g 101 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLR--HAHEAAKQPPSVLCKRNKHHKGSIYCTAW-------SPCG 101 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcc--cccccccCCCeEEeeeccccCccEEEEEe-------cCcc
Confidence 45679999999999999999999999886543211000 00000111112223344578889999999 7789
Q ss_pred cEEEEecCCCcEEEEECCCCee-----eEEEeccCccccccceeeEEE--------------------------------
Q 023672 139 CVFASTTRDHPIHLWDATTGLL-----RCTYRAYDAVDEITAAFSVAF-------------------------------- 181 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~-----~~~~~~~~~~~~~~~v~~~~~-------------------------------- 181 (279)
.+|++|+.|.+|++...+...+ -..+..|.. .|..++|
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdg-----tirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~ 176 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDG-----TIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGF 176 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCC-----ceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcc
Confidence 9999999999999876653221 112222221 2222222
Q ss_pred --------------CCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCC---CCceEEEEEccCCCcEEEEEeC
Q 023672 182 --------------NPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ---AGIMSAIAFSPTHTGMLAIGSY 243 (279)
Q Consensus 182 --------------~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~l~~~~~ 243 (279)
+-++-.+++| .|.+|++||++-+ .+..++...+.+. ...|.+++..| .|.+|++|-.
T Consensus 177 ~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~----~~v~~l~~~~~~~glessavaav~vdp-sgrll~sg~~ 251 (350)
T KOG0641|consen 177 HALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVN----SCVNTLDNDFHDGGLESSAVAAVAVDP-SGRLLASGHA 251 (350)
T ss_pred eeecCCcccEEEEEEecCcEEEccCCCceEEEEeeecc----ceeeeccCcccCCCcccceeEEEEECC-CcceeeeccC
Confidence 2234456666 8899999999874 3344443322222 36799999999 9999999999
Q ss_pred CCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 244 SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 244 dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
|....+||++.+++++.+..|...|+++.|||...|
T Consensus 252 dssc~lydirg~r~iq~f~phsadir~vrfsp~a~y 287 (350)
T KOG0641|consen 252 DSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHY 287 (350)
T ss_pred CCceEEEEeeCCceeeeeCCCccceeEEEeCCCceE
Confidence 999999999999999999999999999999997654
No 106
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2.9e-21 Score=140.65 Aligned_cols=192 Identities=16% Similarity=0.230 Sum_probs=146.5
Q ss_pred eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
......+|.+.|++++.+ +.++|+||.|-+|+|||+....... ....|.+.|+++.|.+..
T Consensus 35 ~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg-----------------~ll~HagsitaL~F~~~~ 95 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG-----------------ILLSHAGSITALKFYPPL 95 (362)
T ss_pred ccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc-----------------ceeccccceEEEEecCCc
Confidence 344788999999999986 7899999999999999998643321 345677899999986531
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceee
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~ 210 (279)
....|++|+.||.|.+|+...-.++..++.|.. .|+.++++|.+++.+ +|.|+.+++||+-++...+..
T Consensus 96 -----S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~-----~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 96 -----SKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKG-----QVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred -----chhheeeecCCCcEEEEEcCCeEEeeeeccccc-----ccceeEecCCCceEEEEcCCceeeeehhhcCccceee
Confidence 122899999999999999999999999999987 899999999999887 679999999999874322211
Q ss_pred e----eeccc-------------------------ccCCCC--CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672 211 Y----STLKG-------------------------NKEGQA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259 (279)
Q Consensus 211 ~----~~~~~-------------------------~~~~~~--~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~ 259 (279)
. .++.. .+..-. ..+.++.| .++..|++|.+|+.|.+||..+..++.
T Consensus 166 ~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~--l~~~~L~vG~d~~~i~~~D~ds~~~~~ 243 (362)
T KOG0294|consen 166 NLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATF--LDGSELLVGGDNEWISLKDTDSDTPLT 243 (362)
T ss_pred ccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeee--cCCceEEEecCCceEEEeccCCCccce
Confidence 0 00000 000001 12334444 356789999999999999999999999
Q ss_pred EEeecCCCEEEEEEc
Q 023672 260 VLHGQEGGVTHVSKL 274 (279)
Q Consensus 260 ~~~~~~~~v~~~~~s 274 (279)
.+.+|...|.++.+-
T Consensus 244 ~~~AH~~RVK~i~~~ 258 (362)
T KOG0294|consen 244 EFLAHENRVKDIASY 258 (362)
T ss_pred eeecchhheeeeEEE
Confidence 999999999888743
No 107
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.4e-22 Score=143.91 Aligned_cols=228 Identities=17% Similarity=0.225 Sum_probs=158.2
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc------cccccCCCC
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN------ACSLAKDQD 108 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------~~~~~~~~~ 108 (279)
++.+||..+....+ .+.+|..+|.+++||+||+.|+|+|.|..|++||+..+....... .+...+...
T Consensus 46 ~vvI~D~~T~~iar------~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~ 119 (405)
T KOG1273|consen 46 RVVIYDFDTFRIAR------MLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR 119 (405)
T ss_pred cEEEEEccccchhh------hhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccC
Confidence 78899999888766 899999999999999999999999999999999999876533221 111111111
Q ss_pred cccceeeecCCCceEE----------------EEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcccc
Q 023672 109 SYEASLVVTEGESVYD----------------FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE 172 (279)
Q Consensus 109 ~~~~~~~~~~~~~v~~----------------~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 172 (279)
+............+.. +...+.+..|.+.|+++++|...|.+.++|..+-+++..++....
T Consensus 120 n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~--- 196 (405)
T KOG1273|consen 120 NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSV--- 196 (405)
T ss_pred CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechh---
Confidence 1111111111100111 111222445788899999999999999999999999988876651
Q ss_pred ccceeeEEECCCCCEEEEe-cCCeEEEEEccCC---CC--ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC
Q 023672 173 ITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP---GR--DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ 245 (279)
Q Consensus 173 ~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~---~~--~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg 245 (279)
..|..+.|+..|++++.- .|..||.|+++.- ++ ..+....+... -....-.+++|+. +|.+++.|+. -.
T Consensus 197 -~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDv--VNk~~Wk~ccfs~-dgeYv~a~s~~aH 272 (405)
T KOG1273|consen 197 -QAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDV--VNKLQWKKCCFSG-DGEYVCAGSARAH 272 (405)
T ss_pred -eeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHH--HhhhhhhheeecC-CccEEEeccccce
Confidence 278899999999999865 9999999998731 11 11111111100 1123456889999 8888877764 44
Q ss_pred cEEEEecCCCeEEEEEeecC-CCEEEEEEcc
Q 023672 246 TSAIYREDNMELLYVLHGQE-GGVTHVSKLS 275 (279)
Q Consensus 246 ~i~~wd~~~~~~~~~~~~~~-~~v~~~~~sp 275 (279)
.++||....|.++..+.|.. ....++.|+|
T Consensus 273 aLYIWE~~~GsLVKILhG~kgE~l~DV~whp 303 (405)
T KOG1273|consen 273 ALYIWEKSIGSLVKILHGTKGEELLDVNWHP 303 (405)
T ss_pred eEEEEecCCcceeeeecCCchhheeeccccc
Confidence 59999999999999999877 4566777776
No 108
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=3.4e-22 Score=148.76 Aligned_cols=203 Identities=15% Similarity=0.192 Sum_probs=144.0
Q ss_pred ccCCCCCceEEEEEccCCC--eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 55 TSSIPNNFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~--~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
...+|.+.|+.+.-++-++ +.++=+..|.|+||++...-..-..............+. ....|+..=+.++|+|.
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~-t~~ghk~EGy~LdWSp~-- 222 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLF-TFNGHKGEGYGLDWSPI-- 222 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceE-EecccCccceeeecccc--
Confidence 4557888899988887554 556667899999999974321111111111111111111 23345567788888763
Q ss_pred ccCCCCcEEEEecCCCcEEEEECCCCeeeE---EEeccCccccccceeeEEECCCCCEE-EEe-cCCeEEEEEccCCCCc
Q 023672 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRC---TYRAYDAVDEITAAFSVAFNPTGTKI-FAG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~-~d~~i~~~d~~~~~~~ 207 (279)
....|++|..-+.|++|...++.-.. .+..|. ..|..++|+|...-+ +++ .|++|+|||+|.+.+
T Consensus 223 ----~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~-----~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~- 292 (440)
T KOG0302|consen 223 ----KTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHT-----KSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPK- 292 (440)
T ss_pred ----cccccccCccccceEeeeeccCceeecCccccccc-----cchhhhccCCccCceEEeeecCceEEEEEecCCCc-
Confidence 22357888888899999998875332 233344 389999999986544 444 999999999998422
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC---CeEEEEEeecCCCEEEEEEccC
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN---MELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~---~~~~~~~~~~~~~v~~~~~spd 276 (279)
..++.+ ++|.+.|+.+.|+. +-.+|++|+.||+++|||+|+ ++++..++.|..+|+++.|+|.
T Consensus 293 ~~~~~~-----kAh~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~ 358 (440)
T KOG0302|consen 293 KAAVST-----KAHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH 358 (440)
T ss_pred cceeEe-----eccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence 222222 68889999999999 667999999999999999985 5688999999999999999985
No 109
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.90 E-value=9.2e-22 Score=159.79 Aligned_cols=207 Identities=14% Similarity=0.128 Sum_probs=163.2
Q ss_pred eeeEecCCCCccc-ceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 35 PLIRFDVPPHRTY-HFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
..+.|+......- +.+.. ..++.-...+++++.++.|++.+.|...|+|-+|++..|-......
T Consensus 423 ~~~tW~~~n~~~G~~~L~~-~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~-------------- 487 (910)
T KOG1539|consen 423 SAYTWNFRNKTSGRHVLDP-KRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG-------------- 487 (910)
T ss_pred eEEEEeccCcccccEEecC-ccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccc--------------
Confidence 4456666554441 21111 1222244679999999999999999999999999999764322111
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (279)
-...|.++|..++. +.-++.+++++.+|.+++||......+..+.... .+.++..+.....++.+ .
T Consensus 488 ~~~ah~~~V~gla~-------D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~------~~~~iv~hr~s~l~a~~~d 554 (910)
T KOG1539|consen 488 DSPAHKGEVTGLAV-------DGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGS------SITGIVYHRVSDLLAIALD 554 (910)
T ss_pred cCccccCceeEEEe-------cCCCceEEEccCcceEEEEecCCcceeeeeccCC------CcceeeeeehhhhhhhhcC
Confidence 12356778888865 5567789999999999999999988888877665 67889999888888855 8
Q ss_pred CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEE
Q 023672 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVS 272 (279)
Q Consensus 193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~ 272 (279)
|-.|+++|..+. .+...+.+|.+.|++++||| +|.+|++++.|++|++||+.++.++..+. -+.+++++.
T Consensus 555 df~I~vvD~~t~--------kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls 624 (910)
T KOG1539|consen 555 DFSIRVVDVVTR--------KVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLS 624 (910)
T ss_pred ceeEEEEEchhh--------hhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeE
Confidence 999999999882 34445589999999999999 99999999999999999999999998877 467899999
Q ss_pred EccCCCC
Q 023672 273 KLSSAYT 279 (279)
Q Consensus 273 ~spdg~~ 279 (279)
|||+|.|
T Consensus 625 ~SPngD~ 631 (910)
T KOG1539|consen 625 FSPNGDF 631 (910)
T ss_pred ECCCCCE
Confidence 9999965
No 110
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=8.1e-22 Score=157.09 Aligned_cols=191 Identities=17% Similarity=0.277 Sum_probs=157.2
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
-+.+|.+....++. ++.||...|.|++...++. +++||.|.++++|....... .
T Consensus 82 ~i~v~~~~~~~P~~------~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~-------------------~ 135 (745)
T KOG0301|consen 82 TIIVFKLSQAEPLY------TLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVY-------------------S 135 (745)
T ss_pred eEEEEecCCCCchh------hhhccccceeeeecCCcCc-eEecccccceEEecchhhhc-------------------c
Confidence 44566666665554 8999999999999988887 99999999999998764321 2
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK 194 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 194 (279)
..+|..+|+.+...| ++ .+++|+.|.+|++|.- ++.++++..|.. .|+.+++-+++.++.++.||
T Consensus 136 l~gH~asVWAv~~l~-------e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD-----~VRgL~vl~~~~flScsNDg 200 (745)
T KOG0301|consen 136 LQGHTASVWAVASLP-------EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTD-----CVRGLAVLDDSHFLSCSNDG 200 (745)
T ss_pred cCCcchheeeeeecC-------CC-cEEeccCcceeeeccC--Cchhhhhccchh-----heeeeEEecCCCeEeecCCc
Confidence 456777888886533 34 8999999999999986 788899999887 99999999999888899999
Q ss_pred eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672 195 SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL 274 (279)
Q Consensus 195 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 274 (279)
.|++|++.. ..+... .+|...++++...+ ++..++++++|+++++|+.. ++.+.+......|+++.+-
T Consensus 201 ~Ir~w~~~g-----e~l~~~----~ghtn~vYsis~~~-~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L 268 (745)
T KOG0301|consen 201 SIRLWDLDG-----EVLLEM----HGHTNFVYSISMAL-SDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVL 268 (745)
T ss_pred eEEEEeccC-----ceeeee----eccceEEEEEEecC-CCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEe
Confidence 999999954 333343 69999999999888 78899999999999999976 7888888666689998887
Q ss_pred cCCC
Q 023672 275 SSAY 278 (279)
Q Consensus 275 pdg~ 278 (279)
++|.
T Consensus 269 ~NgD 272 (745)
T KOG0301|consen 269 LNGD 272 (745)
T ss_pred eCCC
Confidence 7663
No 111
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.89 E-value=2.2e-21 Score=147.76 Aligned_cols=205 Identities=15% Similarity=0.198 Sum_probs=155.8
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+.+|+..+.+.++ .+.+|.+.|.+++|-.....|++++.|++|++|+++...+.. .
T Consensus 225 ~v~Iw~~~t~ehv~------~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ve-----------------t 281 (479)
T KOG0299|consen 225 HVQIWDCDTLEHVK------VFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVE-----------------T 281 (479)
T ss_pred eEEEecCcccchhh------cccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHH-----------------H
Confidence 55689999988877 689999999999999888899999999999999998654322 2
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNK 194 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~ 194 (279)
..+|...|..+.- ..-++.+-+|+.|+++++|++.. .....+..+.. .+.|++|-.+..++..+.+|
T Consensus 282 lyGHqd~v~~Ida-------L~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~-----sidcv~~In~~HfvsGSdnG 348 (479)
T KOG0299|consen 282 LYGHQDGVLGIDA-------LSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEG-----SIDCVAFINDEHFVSGSDNG 348 (479)
T ss_pred HhCCccceeeech-------hcccceEEeccccceeEEEeccc-cceeeeeCCCC-----CeeeEEEecccceeeccCCc
Confidence 3456667777643 33455677777999999999943 33444555544 78899998776666566999
Q ss_pred eEEEEEccCCCCceeeeeecccccC-----CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC----eEEEEEeecC
Q 023672 195 SVRVFDVHRPGRDFEKYSTLKGNKE-----GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----ELLYVLHGQE 265 (279)
Q Consensus 195 ~i~~~d~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~----~~~~~~~~~~ 265 (279)
.|.+|++-+ .+++-.......... .+...|++++..| +..++++|+.+|.|++|-+..+ .++..++ -.
T Consensus 349 ~IaLWs~~K-Kkplf~~~~AHgv~~~~~~~~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~ 425 (479)
T KOG0299|consen 349 SIALWSLLK-KKPLFTSRLAHGVIPELDPVNGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LV 425 (479)
T ss_pred eEEEeeecc-cCceeEeeccccccCCccccccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeecc-cc
Confidence 999999987 344332222211111 2234899999999 9999999999999999998876 5666776 67
Q ss_pred CCEEEEEEccCCC
Q 023672 266 GGVTHVSKLSSAY 278 (279)
Q Consensus 266 ~~v~~~~~spdg~ 278 (279)
+.|++++|+++|+
T Consensus 426 GfVNsl~f~~sgk 438 (479)
T KOG0299|consen 426 GFVNSLAFSNSGK 438 (479)
T ss_pred cEEEEEEEccCCC
Confidence 8899999999997
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=1.2e-21 Score=155.09 Aligned_cols=191 Identities=14% Similarity=0.179 Sum_probs=153.6
Q ss_pred eeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEE-ccCCCeEEEeeCCCeEEEEeCCCCcc--ccccccccccCCCC
Q 023672 32 YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKW-SPDGSSFLTSSEDKTLRIFSLPENGI--SYDVNACSLAKDQD 108 (279)
Q Consensus 32 ~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~ 108 (279)
....+.+|+...... -+..++..|++.|.|+++ .++...+|+|+-|+.|.|||++++.. ....+ .
T Consensus 93 sDtTVK~W~~~~~~~----~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n--------~ 160 (735)
T KOG0308|consen 93 SDTTVKVWNAHKDNT----FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN--------N 160 (735)
T ss_pred CCceEEEeecccCcc----hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc--------c
Confidence 334677888776641 123378889999999999 77888999999999999999997632 11111 1
Q ss_pred cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672 109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188 (279)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (279)
.....+..++..+|++++- ++.|..|++|+..+.|++||.++++.+..+++|.. -|.++..++||..+
T Consensus 161 ~t~~sl~sG~k~siYSLA~-------N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTd-----NVr~ll~~dDGt~~ 228 (735)
T KOG0308|consen 161 VTVNSLGSGPKDSIYSLAM-------NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTD-----NVRVLLVNDDGTRL 228 (735)
T ss_pred cccccCCCCCccceeeeec-------CCcceEEEecCcccceEEeccccccceeeeecccc-----ceEEEEEcCCCCeE
Confidence 1111223356678888865 67788999999999999999999999999999887 89999999999998
Q ss_pred EEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672 189 FAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (279)
Q Consensus 189 ~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~ 255 (279)
+++ .||+|++||+... +++.++ ..|...|+++..+| +-..+.+|+.||.|..=|+++.
T Consensus 229 ls~sSDgtIrlWdLgqQ----rCl~T~----~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQ----RCLATY----IVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eecCCCceEEeeecccc----ceeeeE----EeccCceEEEeeCC-CcceEEecCCCCcEEecccCCc
Confidence 865 9999999999873 555555 67888899999999 9999999999999999999884
No 113
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.1e-22 Score=149.78 Aligned_cols=165 Identities=19% Similarity=0.319 Sum_probs=133.5
Q ss_pred cCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 56 SSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
..+|+++|..++|+.+- +.||+||.|.+|++||+.+++... ...+++..|.++.|+|.
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~-----------------s~~~~~k~Vq~l~wh~~---- 297 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS-----------------SITHHGKKVQTLEWHPY---- 297 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce-----------------ehhhcCCceeEEEecCC----
Confidence 45799999999999854 578999999999999999875532 34578899999999876
Q ss_pred CCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~ 211 (279)
...+|++|+.|++|.+.|++.. ..-..++... .|..++|.|.....+ ++ .||.|+-+|+|.++++.
T Consensus 298 --~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g------~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~v--- 366 (463)
T KOG0270|consen 298 --EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDG------EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPV--- 366 (463)
T ss_pred --CceEEEeccccceEEeeeccCccccCceEEecc------ceEEEEecCCCceeEEEecCCceEEeeecCCCCCce---
Confidence 5669999999999999999952 2223333333 788999999875544 66 99999999999876443
Q ss_pred eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (279)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~ 256 (279)
.++ .+|.+.|.++++++....+|++++.|+.|++|++....
T Consensus 367 wt~----~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 367 WTL----KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred eEE----EeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 344 78999999999999778899999999999999986543
No 114
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=3.7e-21 Score=139.68 Aligned_cols=206 Identities=18% Similarity=0.160 Sum_probs=149.6
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.++.+|+.++... .+..|..+|.||.+++....+++||+|++|++||.+..... .
T Consensus 76 ~vr~~Dln~~~~~-------~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~------------------~ 130 (323)
T KOG1036|consen 76 QVRRYDLNTGNED-------QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV------------------G 130 (323)
T ss_pred eEEEEEecCCcce-------eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccc------------------c
Confidence 4566666666544 57789999999999998888999999999999999852211 2
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (279)
....++.|+++.. .++.|+.|..+..+.+||+++........... -.-.+.|+++-|++.-++ ++-|
T Consensus 131 ~~d~~kkVy~~~v---------~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~---lkyqtR~v~~~pn~eGy~~sSie 198 (323)
T KOG1036|consen 131 TFDQGKKVYCMDV---------SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS---LKYQTRCVALVPNGEGYVVSSIE 198 (323)
T ss_pred ccccCceEEEEec---------cCCEEEEeecCceEEEEEcccccchhhhcccc---ceeEEEEEEEecCCCceEEEeec
Confidence 2333457777744 67799999999999999999865433211111 112678999999876555 5599
Q ss_pred CeEEEEEccCCCCceeeeeeccccc-----CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCE
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNK-----EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGV 268 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v 268 (279)
|.|.+=.++...........++.+. ...-.+|++++|+| -...|+||+.||.|.+||+.+.+.+..+......|
T Consensus 199 GRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI 277 (323)
T KOG1036|consen 199 GRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSI 277 (323)
T ss_pred ceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcchhhhhhccCCCCce
Confidence 9999877765311111111121111 11124799999999 78889999999999999999999999998888889
Q ss_pred EEEEEccCCC
Q 023672 269 THVSKLSSAY 278 (279)
Q Consensus 269 ~~~~~spdg~ 278 (279)
.+++|+.||.
T Consensus 278 ~slsfs~dG~ 287 (323)
T KOG1036|consen 278 SSLSFSMDGS 287 (323)
T ss_pred EEEEeccCCC
Confidence 9999999984
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=5e-21 Score=157.02 Aligned_cols=216 Identities=16% Similarity=0.227 Sum_probs=154.8
Q ss_pred CCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc-cc-------------cccccCCCCcccceeeecCCC--
Q 023672 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD-VN-------------ACSLAKDQDSYEASLVVTEGE-- 120 (279)
Q Consensus 57 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~-~~-------------~~~~~~~~~~~~~~~~~~~~~-- 120 (279)
.+|++..+.++|.|+|++|++++.||.|++|+........+ .. ........+..+..+.+..+.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~ 89 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED 89 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence 47899999999999999999999999999999765421100 00 000001111122222222111
Q ss_pred -ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEE
Q 023672 121 -SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRV 198 (279)
Q Consensus 121 -~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~ 198 (279)
-+..+.+....++++.+|.++|.|+.|-.|++.++.+......++.|.. +|.++.|+|.+++|+++ .||.|++
T Consensus 90 ~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a-----pVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 90 TILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA-----PVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred ceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC-----ceeeeeEcCCCCEEEEEecCceEEE
Confidence 2233333444567799999999999999999999999999999999987 99999999999999966 9999999
Q ss_pred EEccCCCCceeeeeecccccCCC-CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee--cCCCEEEEEEcc
Q 023672 199 FDVHRPGRDFEKYSTLKGNKEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG--QEGGVTHVSKLS 275 (279)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~--~~~~v~~~~~sp 275 (279)
||+..+ .....+..+....... ...+..++|+| ++..|+..+.|+.|++|+..++++...+.. +...+..++|+|
T Consensus 165 w~~~~~-~~~~tl~~v~k~n~~~~s~i~~~~aW~P-k~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 165 WDLQDG-ILSKTLTGVDKDNEFILSRICTRLAWHP-KGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred EEcccc-hhhhhcccCCccccccccceeeeeeecC-CCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 999973 2222222221111222 45678899999 555555666799999999999999888874 445699999999
Q ss_pred CCCC
Q 023672 276 SAYT 279 (279)
Q Consensus 276 dg~~ 279 (279)
+|+|
T Consensus 243 nG~Y 246 (933)
T KOG1274|consen 243 NGKY 246 (933)
T ss_pred CCcE
Confidence 9987
No 116
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=2.3e-22 Score=168.32 Aligned_cols=192 Identities=14% Similarity=0.195 Sum_probs=151.9
Q ss_pred eccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 54 RTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
.....|++.|.++.|++.. ++||+|+.||.|.|||+.+........ .......|.+++|+..
T Consensus 110 a~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~---------------~~~~~~eI~~lsWNrk-- 172 (1049)
T KOG0307|consen 110 ATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG---------------SQAPPSEIKCLSWNRK-- 172 (1049)
T ss_pred hhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC---------------CCCCcccceEeccchh--
Confidence 3677899999999999955 599999999999999998643211110 1223457899999643
Q ss_pred ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEEEEe-cC--CeEEEEEccCCCCc
Q 023672 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG-YN--KSVRVFDVHRPGRD 207 (279)
Q Consensus 133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~d--~~i~~~d~~~~~~~ 207 (279)
..+.|++++.+|.+.|||++..+.+-.+..+... ..+..+.|+|+. ++++++ .| -.|.+||+|....+
T Consensus 173 ----vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~---~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP 245 (1049)
T KOG0307|consen 173 ----VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR---MHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP 245 (1049)
T ss_pred ----hhHHhhccCCCCCceeccccCCCcccccccCCCc---cceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc
Confidence 4568999999999999999988877776655432 257789999996 334444 33 57999999975444
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
.+.+ .+|...|.++.|++.|..+|++++.|+.|.+|+..+++.+..+.....++..+.|+|.
T Consensus 246 ~k~~-------~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 246 LKIL-------EGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred hhhh-------cccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence 3332 6899999999999977799999999999999999999999999988889999999985
No 117
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.1e-20 Score=137.68 Aligned_cols=199 Identities=16% Similarity=0.205 Sum_probs=138.3
Q ss_pred cceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCC--eEEEeeCCCeEEEEeCCCCccccccccccccCCC
Q 023672 30 QEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQ 107 (279)
Q Consensus 30 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 107 (279)
+...-.+.+||+.+..... .+..|.+.|+++.|.++.. .|++|+.||.|.+|+........
T Consensus 59 GssDetI~IYDm~k~~qlg------~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~----------- 121 (362)
T KOG0294|consen 59 GSSDETIHIYDMRKRKQLG------ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK----------- 121 (362)
T ss_pred cCCCCcEEEEeccchhhhc------ceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee-----------
Confidence 3344467788888877765 7778999999999999765 89999999999999998543211
Q ss_pred CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-
Q 023672 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT- 186 (279)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 186 (279)
..-.|.+.|+.++. +|.+++.++.+.|+.+++||+-.|+.-..++... ....+.|+|.|.
T Consensus 122 ------slK~H~~~Vt~lsi-------HPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~------~at~v~w~~~Gd~ 182 (362)
T KOG0294|consen 122 ------SLKAHKGQVTDLSI-------HPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN------KATLVSWSPQGDH 182 (362)
T ss_pred ------eecccccccceeEe-------cCCCceEEEEcCCceeeeehhhcCccceeeccCC------cceeeEEcCCCCE
Confidence 22334556888865 7789999999999999999998887554443322 112234444333
Q ss_pred --------------------------------------EEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEE
Q 023672 187 --------------------------------------KIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (279)
Q Consensus 187 --------------------------------------~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (279)
.++ .+.|+.|++||.... .+...+ .+|...|-+
T Consensus 183 F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~----~~~~~~----~AH~~RVK~ 254 (362)
T KOG0294|consen 183 FVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSD----TPLTEF----LAHENRVKD 254 (362)
T ss_pred EEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEeccCCC----ccceee----ecchhheee
Confidence 333 336666777766641 122222 689999999
Q ss_pred EEE--ccCCCcEEEEEeCCCcEEEEecCCC-----eEEEEEeecCCCEEEEEEc
Q 023672 228 IAF--SPTHTGMLAIGSYSQTSAIYREDNM-----ELLYVLHGQEGGVTHVSKL 274 (279)
Q Consensus 228 ~~~--sp~~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~s 274 (279)
+.+ .| .+.+|++++.||.|++||++.. +++..+.. ...++|+...
T Consensus 255 i~~~~~~-~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 255 IASYTNP-EHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNT-NVRLTCLRVK 306 (362)
T ss_pred eEEEecC-CceEEEEeccCceEEEEEccccccCCcceeEEeec-CCccceeeeh
Confidence 984 45 7889999999999999999865 34444442 4456666543
No 118
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=5.6e-23 Score=164.41 Aligned_cols=184 Identities=16% Similarity=0.256 Sum_probs=157.4
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
....|...|.++..-..++.+++|+.|..+.+|.+...... . -...|..+|.++.|
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i----------------~-S~~~hespIeSl~f------- 78 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI----------------T-SLTGHESPIESLTF------- 78 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh----------------h-eeeccCCcceeeec-------
Confidence 45568889999998778889999999999999988742110 0 13456678888876
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
++...+|+.|+.+|+|++||++.++.++++.++.. .+.++.|+|-+.+.+.| .|..+++||.+.. .+...
T Consensus 79 ~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~-----~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~----Gc~~~ 149 (825)
T KOG0267|consen 79 DTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLL-----NITSVDFHPYGEFFASGSTDTDLKIWDIRKK----GCSHT 149 (825)
T ss_pred CcchhhhcccccCCceeeeehhhhhhhhhhhcccc-----CcceeeeccceEEeccccccccceehhhhcc----Cceee
Confidence 67788999999999999999999999999888886 88899999999999877 9999999999963 23333
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
+ .+|...+..+.|+| +|.+++.|++|..++|||+..|+.+..|..|++.+.++.|+|.
T Consensus 150 ~----~s~~~vv~~l~lsP-~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~ 207 (825)
T KOG0267|consen 150 Y----KSHTRVVDVLRLSP-DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPL 207 (825)
T ss_pred e----cCCcceeEEEeecC-CCceeeccCCcceeeeecccccccccccccccccccccccCch
Confidence 3 67899999999999 9999999999999999999999999999999999999999985
No 119
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3.2e-22 Score=148.17 Aligned_cols=183 Identities=17% Similarity=0.213 Sum_probs=133.7
Q ss_pred ccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
.+.||.+.|.|++=+|.. ..+++|+.||.|+|||+....+.. ....|.+.|..+++..
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-----------------~f~AH~G~V~Gi~v~~---- 119 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-----------------TFKAHEGLVRGICVTQ---- 119 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-----------------eeecccCceeeEEecc----
Confidence 678999999999999976 789999999999999998644321 2223334455554411
Q ss_pred cCCCCcEEEEecCCCc--------------------------------------EEEEECCCCeeeEEEeccCccccccc
Q 023672 134 SDPTSCVFASTTRDHP--------------------------------------IHLWDATTGLLRCTYRAYDAVDEITA 175 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~--------------------------------------i~i~d~~~~~~~~~~~~~~~~~~~~~ 175 (279)
..+++++.|.+ |.|||..-..++..+.-... .
T Consensus 120 -----~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D-----t 189 (433)
T KOG0268|consen 120 -----TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD-----S 189 (433)
T ss_pred -----cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC-----c
Confidence 23344444444 45555554455555554443 6
Q ss_pred eeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 176 AFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 176 v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
+.++.|+|....++ ++ .|+.|.|||+++ ..+++.+.. ...-+.++|+| ++..+++|++|..++.||++
T Consensus 190 i~svkfNpvETsILas~~sDrsIvLyD~R~-~~Pl~KVi~--------~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 190 ISSVKFNPVETSILASCASDRSIVLYDLRQ-ASPLKKVIL--------TMRTNTICWNP-EAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred eeEEecCCCcchheeeeccCCceEEEeccc-CCccceeee--------eccccceecCc-cccceeeccccccceehhhh
Confidence 78999999876555 55 999999999998 444443322 22456799999 99999999999999999999
Q ss_pred CC-eEEEEEeecCCCEEEEEEccCCC
Q 023672 254 NM-ELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 254 ~~-~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
.. .++....+|.+.|.++.|||.|+
T Consensus 260 ~l~~p~~v~~dhvsAV~dVdfsptG~ 285 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAVMDVDFSPTGQ 285 (433)
T ss_pred hhcccchhhcccceeEEEeccCCCcc
Confidence 76 46788899999999999999996
No 120
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.6e-21 Score=147.69 Aligned_cols=199 Identities=16% Similarity=0.236 Sum_probs=154.0
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
-+.+||+....+. +.+.+|.+.|++|.++-...+||+++..|.|.|..+.++..... +
T Consensus 102 ~Vkiwdl~~kl~h------r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~----------------f 159 (673)
T KOG4378|consen 102 CVKIWDLRAKLIH------RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT----------------F 159 (673)
T ss_pred eeeehhhHHHHHh------hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc----------------e
Confidence 5778888844443 37899999999999999999999999999999999987644221 2
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEe-ccCccccccceeeEEECCCCCEEE--Ee
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYR-AYDAVDEITAAFSVAFNPTGTKIF--AG 191 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~--~~ 191 (279)
....+..|.-+.|+|. ...+|.+++.+|.|.+||+....++..+. .|.. +...|+|+|....|+ +|
T Consensus 160 ~~~sgqsvRll~ys~s------kr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsA-----P~~gicfspsne~l~vsVG 228 (673)
T KOG4378|consen 160 TIDSGQSVRLLRYSPS------KRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSA-----PCRGICFSPSNEALLVSVG 228 (673)
T ss_pred ecCCCCeEEEeecccc------cceeeEeeccCCeEEEEeccCCCcccchhhhccC-----CcCcceecCCccceEEEec
Confidence 2333455667777543 23367788999999999998776665443 3333 778999999876555 56
Q ss_pred cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEE
Q 023672 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTH 270 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~ 270 (279)
.|..|.+||.+. .+...++ ....+...++|++ +|.+|+.|...|.|..||+|.. .++.++..|...|++
T Consensus 229 ~Dkki~~yD~~s-~~s~~~l--------~y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~ 298 (673)
T KOG4378|consen 229 YDKKINIYDIRS-QASTDRL--------TYSHPLSTVAFSE-CGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTR 298 (673)
T ss_pred ccceEEEeeccc-cccccee--------eecCCcceeeecC-CceEEEeecCCceEEEEecccCCCCceEeeecccceeE
Confidence 999999999986 2222222 2245788999999 9999999999999999999954 688999999999999
Q ss_pred EEEccC
Q 023672 271 VSKLSS 276 (279)
Q Consensus 271 ~~~spd 276 (279)
++|-|.
T Consensus 299 vafq~s 304 (673)
T KOG4378|consen 299 VAFQPS 304 (673)
T ss_pred EEeeec
Confidence 999875
No 121
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=5.3e-22 Score=153.07 Aligned_cols=187 Identities=13% Similarity=0.180 Sum_probs=144.2
Q ss_pred cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeee-cCCCceEEEEeeCccccc
Q 023672 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV-TEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~ 134 (279)
...|..-|.++.++...++++||+. |-|+|||+........ +..+.. ...+.+.++..
T Consensus 415 tL~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~P-------------vsqLdcl~rdnyiRSckL------- 473 (705)
T KOG0639|consen 415 TLAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSP-------------VSQLDCLNRDNYIRSCKL------- 473 (705)
T ss_pred hhccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCc-------------cccccccCcccceeeeEe-------
Confidence 4468888999999999999999996 6799999985422111 111222 23345555544
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEE--EeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCT--YRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~ 211 (279)
.|||+.|++|+.-.++.|||+....+.-. +..... .++.++.+||.++.+++ .||.|.|||+++
T Consensus 474 ~pdgrtLivGGeastlsiWDLAapTprikaeltssap-----aCyALa~spDakvcFsccsdGnI~vwDLhn-------- 540 (705)
T KOG0639|consen 474 LPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP-----ACYALAISPDAKVCFSCCSDGNIAVWDLHN-------- 540 (705)
T ss_pred cCCCceEEeccccceeeeeeccCCCcchhhhcCCcch-----hhhhhhcCCccceeeeeccCCcEEEEEccc--------
Confidence 78999999999999999999987654332 222222 67899999999999966 999999999998
Q ss_pred eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
.++...+.+|.+.+.||..++ +|..|-+|+-|++|+-||++++..+.... ..+.|.++..+|.|-
T Consensus 541 q~~VrqfqGhtDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~d 605 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGD 605 (705)
T ss_pred ceeeecccCCCCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCcc
Confidence 244555589999999999999 99999999999999999999998765443 345688888888764
No 122
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.88 E-value=1.3e-21 Score=151.03 Aligned_cols=206 Identities=18% Similarity=0.266 Sum_probs=155.1
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
-+.+||+............ ........|.++.+.|||+.|++|+.-.++.|||+...... +
T Consensus 441 cVKVWdis~pg~k~PvsqL-dcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTpr------------------i 501 (705)
T KOG0639|consen 441 CVKVWDISQPGNKSPVSQL-DCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPR------------------I 501 (705)
T ss_pred eEEEeeccCCCCCCccccc-cccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcc------------------h
Confidence 4678887654322211111 11224577999999999999999999999999999854221 0
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d 193 (279)
.. ...+-+-.-..++++||.+..++|..||.|.|||+.+...++.+.+|.. .+.||.++++|..|-+| .|
T Consensus 502 ka----eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD-----GascIdis~dGtklWTGGlD 572 (705)
T KOG0639|consen 502 KA----ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD-----GASCIDISKDGTKLWTGGLD 572 (705)
T ss_pred hh----hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC-----CceeEEecCCCceeecCCCc
Confidence 00 1111000111246799999999999999999999999999999999987 88999999999888866 99
Q ss_pred CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEE
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSK 273 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 273 (279)
.+||.||++.+. .... ......|.++-++| .+.+|+.|-+++.+.|-... +...+.+..|++-|.++.|
T Consensus 573 ntvRcWDlregr-qlqq--------hdF~SQIfSLg~cP-~~dWlavGMens~vevlh~s-kp~kyqlhlheScVLSlKF 641 (705)
T KOG0639|consen 573 NTVRCWDLREGR-QLQQ--------HDFSSQIFSLGYCP-TGDWLAVGMENSNVEVLHTS-KPEKYQLHLHESCVLSLKF 641 (705)
T ss_pred cceeehhhhhhh-hhhh--------hhhhhhheecccCC-CccceeeecccCcEEEEecC-CccceeecccccEEEEEEe
Confidence 999999999842 1111 13356799999999 99999999999998887754 3445678889999999999
Q ss_pred ccCCCC
Q 023672 274 LSSAYT 279 (279)
Q Consensus 274 spdg~~ 279 (279)
.+.|++
T Consensus 642 a~cGkw 647 (705)
T KOG0639|consen 642 AYCGKW 647 (705)
T ss_pred cccCce
Confidence 999985
No 123
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=1.4e-21 Score=148.15 Aligned_cols=222 Identities=15% Similarity=0.275 Sum_probs=157.0
Q ss_pred cccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-------CCCeEEEeeCCCeEEEEeCCCCcccccccc
Q 023672 28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-------DGSSFLTSSEDKTLRIFSLPENGISYDVNA 100 (279)
Q Consensus 28 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-------~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~ 100 (279)
........+++|+.....++..+.. .+. ..-.|++|.. .|+++|.|+.|..|.|||+.=.... .+
T Consensus 146 eddvs~LEvYVyn~~e~nlYvHHD~--ilp---afPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v---~P 217 (463)
T KOG0270|consen 146 EDDVSYLEVYVYNEEEENLYVHHDF--ILP---AFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAV---LP 217 (463)
T ss_pred cCCceEEEEEEEcCCCcceeEecce--ecc---CcchhhhhhhcCCCCCCCcceEEEeccCceeEEecccccccc---cc
Confidence 3345556788888777555432111 111 1235666632 3679999999999999998632110 01
Q ss_pred ccccCC-------CCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccc
Q 023672 101 CSLAKD-------QDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI 173 (279)
Q Consensus 101 ~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 173 (279)
+..+.. ..+.......+|...|..+.|+-. ..+.||||+.|.+|++||+.++++..++..+..
T Consensus 218 ~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~------~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k---- 287 (463)
T KOG0270|consen 218 CVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN------FRNVLASGSADKTVKLWDVDTGKPKSSITHHGK---- 287 (463)
T ss_pred ceeechhhhhhhhhhcccccccccchHHHHHHHhccc------cceeEEecCCCceEEEEEcCCCCcceehhhcCC----
Confidence 111000 001111123356667777777432 345899999999999999999999999997776
Q ss_pred cceeeEEECCCC-CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 174 TAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 174 ~~v~~~~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
.|.++.|+|.. .+|++| .|++|.+.|+|.++.....+ . ..+.|-.++|.|.....++++..||+++-+|
T Consensus 288 -~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k-------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D 358 (463)
T KOG0270|consen 288 -KVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-K-------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFD 358 (463)
T ss_pred -ceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-E-------eccceEEEEecCCCceeEEEecCCceEEeee
Confidence 99999999975 556676 99999999999643322222 2 2457899999997778889999999999999
Q ss_pred cCCC-eEEEEEeecCCCEEEEEEccC
Q 023672 252 EDNM-ELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 252 ~~~~-~~~~~~~~~~~~v~~~~~spd 276 (279)
+|+. +++.+++.|.++|.+|.+++.
T Consensus 359 ~R~~~~~vwt~~AHd~~ISgl~~n~~ 384 (463)
T KOG0270|consen 359 IRNPGKPVWTLKAHDDEISGLSVNIQ 384 (463)
T ss_pred cCCCCCceeEEEeccCCcceEEecCC
Confidence 9976 899999999999999999864
No 124
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.88 E-value=3.8e-21 Score=140.68 Aligned_cols=218 Identities=14% Similarity=0.188 Sum_probs=155.4
Q ss_pred ccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672 29 QQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQD 108 (279)
Q Consensus 29 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 108 (279)
.+.+.-|+.+||.-++++...++.+....-- -+-.+++|+|||.+|++|- ...|++||+.......+......
T Consensus 128 ~ssr~~PIh~wdaftG~lraSy~~ydh~de~-taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~----- 200 (406)
T KOG2919|consen 128 VSSRDQPIHLWDAFTGKLRASYRAYDHQDEY-TAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVT----- 200 (406)
T ss_pred eccccCceeeeeccccccccchhhhhhHHhh-hhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhh-----
Confidence 3445558899999998887655543211111 1345899999999998665 67999999954322111111100
Q ss_pred cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672 109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188 (279)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (279)
.-.....+-+.+++++|. +...++.++....+-||.-..+.++..+-.+.. .|+.+.|.++|+.|
T Consensus 201 ----~~k~gq~giisc~a~sP~------~~~~~a~gsY~q~~giy~~~~~~pl~llggh~g-----GvThL~~~edGn~l 265 (406)
T KOG2919|consen 201 ----KGKFGQKGIISCFAFSPM------DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGG-----GVTHLQWCEDGNKL 265 (406)
T ss_pred ----cccccccceeeeeeccCC------CCcceeeecccceeeeEecCCCCceeeecccCC-----CeeeEEeccCcCee
Confidence 012223445666666554 445899999999999999888888888887776 99999999999999
Q ss_pred EEe--cCCeEEEEEccCCCCceeeeeecccccCCCC---CceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEEe
Q 023672 189 FAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA---GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLH 262 (279)
Q Consensus 189 ~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~ 262 (279)
++| .|..|..||+|....++-. + ..|. ..-.-+...| .+++|++|+.||.|++||+.+ +..+..+.
T Consensus 266 fsGaRk~dkIl~WDiR~~~~pv~~---L----~rhv~~TNQRI~FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~ 337 (406)
T KOG2919|consen 266 FSGARKDDKILCWDIRYSRDPVYA---L----ERHVGDTNQRILFDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTG 337 (406)
T ss_pred cccccCCCeEEEEeehhccchhhh---h----hhhccCccceEEEecCC-CCceeeccCCCccEEEEecCCCCCcccccc
Confidence 976 7899999999975433322 2 2332 2222456678 899999999999999999998 77778888
Q ss_pred ecCCCEEEEEEccC
Q 023672 263 GQEGGVTHVSKLSS 276 (279)
Q Consensus 263 ~~~~~v~~~~~spd 276 (279)
.+...|++++++|-
T Consensus 338 ~~sd~vNgvslnP~ 351 (406)
T KOG2919|consen 338 NYSDTVNGVSLNPI 351 (406)
T ss_pred cccccccceecCcc
Confidence 88888999998874
No 125
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=3.9e-21 Score=139.05 Aligned_cols=174 Identities=18% Similarity=0.331 Sum_probs=139.9
Q ss_pred ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
-..+|+-.|..+.|-| |.-.+.+++-|.+++|||.++.+.. ..+.-.+.|++.+|+|-.
T Consensus 96 h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a------------------~~F~me~~VYshamSp~a-- 155 (397)
T KOG4283|consen 96 HENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEA------------------VDFKMEGKVYSHAMSPMA-- 155 (397)
T ss_pred CCccceeeeeeeEEeeecCceeecccccceEEEeecccceee------------------EEeecCceeehhhcChhh--
Confidence 4668999999999999 5568889999999999999975432 334445678888887642
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~ 211 (279)
-...++|+|..|-.|++.|+.+|.....+.+|.. .|.++.|+|...+++ +| .||.|++||++.....+..+
T Consensus 156 --~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~-----~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~l 228 (397)
T KOG4283|consen 156 --MSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRD-----GVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVL 228 (397)
T ss_pred --hcceEEEEecCCCcEEEEeccCCcceeeeccccC-----ceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEe
Confidence 2345889999999999999999999999999997 999999999998877 55 99999999999743222221
Q ss_pred -------eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672 212 -------STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (279)
Q Consensus 212 -------~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~ 256 (279)
........+|.+.|..++|+. ++.++++++.|..+++|+..+|+
T Consensus 229 D~hn~k~~p~~~~n~ah~gkvngla~tS-d~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 229 DQHNTKRPPILKTNTAHYGKVNGLAWTS-DARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ecccCccCccccccccccceeeeeeecc-cchhhhhccCccceEEeecccCc
Confidence 111123368899999999999 89999999999999999998774
No 126
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=1.1e-19 Score=132.19 Aligned_cols=222 Identities=17% Similarity=0.264 Sum_probs=156.9
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
.+.+||..... ..+.+...-..|.+.|..+.|.+ -|+.+|+++.|+++.||.=....... ....++.
T Consensus 36 ~vkI~d~~~~s--~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~---------~~~~Wv~ 104 (361)
T KOG2445|consen 36 TVKIWDSTSDS--GTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEA---------HGRRWVR 104 (361)
T ss_pred cEEEEeccCCC--CceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeeccccccc---------ccceeEE
Confidence 56777753322 23445556778999999999965 78999999999999999864221110 0112222
Q ss_pred e-eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC--------ccccccceeeEEECC
Q 023672 113 S-LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD--------AVDEITAAFSVAFNP 183 (279)
Q Consensus 113 ~-~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~--------~~~~~~~v~~~~~~~ 183 (279)
. ........|++++|.|.. -|-.+|+++.||.||||+.-..-.+....... ......+..|+.|+|
T Consensus 105 ~ttl~DsrssV~DV~FaP~h-----lGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~ 179 (361)
T KOG2445|consen 105 RTTLVDSRSSVTDVKFAPKH-----LGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNP 179 (361)
T ss_pred EEEeecCCcceeEEEecchh-----cceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeecc
Confidence 2 334456789999998753 46789999999999999986543222211111 111233678999998
Q ss_pred C---CCEEEEecCC------eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC---cEEEEEeCCCcEEEEe
Q 023672 184 T---GTKIFAGYNK------SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT---GMLAIGSYSQTSAIYR 251 (279)
Q Consensus 184 ~---~~~l~~~~d~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~---~~l~~~~~dg~i~~wd 251 (279)
. ..+|++|.|. .++||.....++......++ .+|..+|++++|.|.-| .+|++++.|| |+||.
T Consensus 180 sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L----~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~ 254 (361)
T KOG2445|consen 180 SRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAEL----PDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFK 254 (361)
T ss_pred ccccCceEEEEcccCCccccceEEEEecCCcceeeeehhc----CCCCCcceeeeeccccCCceeeEEEeecCc-EEEEE
Confidence 6 3677777554 89999998876666666666 59999999999999433 4799999999 99999
Q ss_pred cCCC--------------------eEEEEEeecCCCEEEEEEccCC
Q 023672 252 EDNM--------------------ELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 252 ~~~~--------------------~~~~~~~~~~~~v~~~~~spdg 277 (279)
++.. +.+..+..|++.|+.+.|+-.|
T Consensus 255 v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG 300 (361)
T KOG2445|consen 255 VKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG 300 (361)
T ss_pred EeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence 8731 2456677899999999998655
No 127
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=1.4e-20 Score=143.49 Aligned_cols=203 Identities=16% Similarity=0.241 Sum_probs=154.5
Q ss_pred eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccc-ccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDV-NACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
+.....|.-.|.||+++|++++.++++.||+|.-|++.++...... ........+......-...|...+.++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~------ 208 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTL------ 208 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEE------
Confidence 4467789999999999999999999999999999999988643111 111111101111110111444556665
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceee
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~ 210 (279)
++++|+++|++|+.|..|.||+.++.+.++.+..|.. .|.+++|-.....++ ++.|+.|++|++...
T Consensus 209 -avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-----~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~------ 276 (479)
T KOG0299|consen 209 -AVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-----AVSSLAFRKGTSELYSASADRSVKVWSIDQL------ 276 (479)
T ss_pred -EEcCCCcEEEecCCCceEEEecCcccchhhccccccc-----ceeeeeeecCccceeeeecCCceEEEehhHh------
Confidence 4589999999999999999999999999999999887 999999988777777 559999999999862
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
.+...+.+|.+.|.++.... .+..+.+|+.|+++++|++..- ....+.+|.+.+-+++|-.+.
T Consensus 277 --s~vetlyGHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ee-sqlifrg~~~sidcv~~In~~ 339 (479)
T KOG0299|consen 277 --SYVETLYGHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEE-SQLIFRGGEGSIDCVAFINDE 339 (479)
T ss_pred --HHHHHHhCCccceeeechhc-ccceEEeccccceeEEEecccc-ceeeeeCCCCCeeeEEEeccc
Confidence 33444479999999998887 7777888889999999999433 334677788888888886553
No 128
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.7e-20 Score=135.81 Aligned_cols=181 Identities=15% Similarity=0.270 Sum_probs=140.6
Q ss_pred eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (279)
-.|+.|++.|.+||+|+.||.|.|||+.+... ..+...|-.+|.+++| |++|+.|+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~i-----------------ar~lsaH~~pi~sl~W-------S~dgr~Ll 81 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRI-----------------ARMLSAHVRPITSLCW-------SRDGRKLL 81 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccch-----------------hhhhhccccceeEEEe-------cCCCCEee
Confidence 68999999999999999999999999997542 1245567789999999 78999999
Q ss_pred EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCE-EEEe-cCCeEEEEEccCCCCceeeeeecccccCC
Q 023672 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTK-IFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (279)
Q Consensus 143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 220 (279)
++|.|..|.+||+..|.+++.++... +|+...|+|.... +++. .+..-.+.++..+.. . .+.....+
T Consensus 82 tsS~D~si~lwDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h--~---~Lp~d~d~ 150 (405)
T KOG1273|consen 82 TSSRDWSIKLWDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH--S---VLPKDDDG 150 (405)
T ss_pred eecCCceeEEEeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecCCce--e---eccCCCcc
Confidence 99999999999999999999998776 8999999997533 3344 666666666664211 1 11111011
Q ss_pred C-CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC-CCEEEEEEccCCCC
Q 023672 221 Q-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE-GGVTHVSKLSSAYT 279 (279)
Q Consensus 221 ~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~spdg~~ 279 (279)
. .....+..|.+ .|.++++|...|.+.++|..+.+++..++... ..|..+.|+-.|++
T Consensus 151 dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~ 210 (405)
T KOG1273|consen 151 DLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRF 210 (405)
T ss_pred ccccccccccccC-CCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcE
Confidence 1 11223346888 99999999999999999999999998888665 68889999888763
No 129
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.87 E-value=6.3e-21 Score=145.25 Aligned_cols=194 Identities=14% Similarity=0.187 Sum_probs=146.7
Q ss_pred ccCCCCCceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 55 TSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
...-+.+.|++++|+|.. +.+|+|..-|.|-+||+.+.+. +.....+...|+.+|.++.|+|.
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~-------------d~d~v~~f~~hs~~Vs~l~F~P~-- 245 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK-------------DKDGVYLFTPHSGPVSGLKFSPA-- 245 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC-------------ccCceEEeccCCccccceEecCC--
Confidence 455688999999999944 5888999999999999963221 11112255678889999999776
Q ss_pred ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee
Q 023672 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~ 211 (279)
+...+++.|.||+|++-|++.+.....+..... ...+.++.|+.+...++.+ .=|...+||+++++.....+
T Consensus 246 ----n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d---~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~ 318 (498)
T KOG4328|consen 246 ----NTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTD---NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENL 318 (498)
T ss_pred ----ChhheeeeccCceeeeeeecchhhHHHhhcCcc---ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhh
Confidence 455899999999999999988754433333211 1267788998887666644 55699999999976555443
Q ss_pred eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe----EEEEEeecCCCEEEEEEccCC
Q 023672 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME----LLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~spdg 277 (279)
.-|...|.+++++|....+|++++.|++.+|||+|... ++-..-.|...|.+..|||+|
T Consensus 319 -------~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~ 381 (498)
T KOG4328|consen 319 -------RLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG 381 (498)
T ss_pred -------hhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC
Confidence 45666899999999888999999999999999998642 222333488999999999987
No 130
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=7.4e-20 Score=139.67 Aligned_cols=204 Identities=17% Similarity=0.195 Sum_probs=141.1
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc---------cccccccCC---------CCcccceeeecCCCc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD---------VNACSLAKD---------QDSYEASLVVTEGES 121 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~---------~~~~~~~~~---------~~~~~~~~~~~~~~~ 121 (279)
.+.|++|.|+|....|++|+.|++++||.++....... .....+.+. ..++........ ..
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~-ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET-AK 291 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccc-cc
Confidence 47899999999999999999999999999975432100 000000000 000000000000 00
Q ss_pred eEEEEe-------eCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecC
Q 023672 122 VYDFCW-------FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN 193 (279)
Q Consensus 122 v~~~~~-------~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d 193 (279)
+..+.- +-....+++++++|+..+..|.|.+....+++.+..++..+ .|..++|+.+++.|+ +|.+
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG------~v~~~~fsSdsk~l~~~~~~ 365 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG------VVSDFTFSSDSKELLASGGT 365 (514)
T ss_pred cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc------EEeeEEEecCCcEEEEEcCC
Confidence 000000 00123567888888888888888888888888888888776 789999999998888 5599
Q ss_pred CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC------CeEEEEEeecCCC
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN------MELLYVLHGQEGG 267 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~------~~~~~~~~~~~~~ 267 (279)
|.|.+||++.+ .+...+... + .-.-+++|.++ ++.+||+|+..|.|.|||..+ .+++..+..-...
T Consensus 366 GeV~v~nl~~~----~~~~rf~D~--G-~v~gts~~~S~-ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~ 437 (514)
T KOG2055|consen 366 GEVYVWNLRQN----SCLHRFVDD--G-SVHGTSLCISL-NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA 437 (514)
T ss_pred ceEEEEecCCc----ceEEEEeec--C-ccceeeeeecC-CCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee
Confidence 99999999985 344444321 1 11346788899 899999999999999999653 4677888877889
Q ss_pred EEEEEEccCCC
Q 023672 268 VTHVSKLSSAY 278 (279)
Q Consensus 268 v~~~~~spdg~ 278 (279)
|++|.|+||++
T Consensus 438 Itsl~Fn~d~q 448 (514)
T KOG2055|consen 438 ITSLQFNHDAQ 448 (514)
T ss_pred eeeeeeCcchh
Confidence 99999999986
No 131
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=5.3e-19 Score=128.63 Aligned_cols=198 Identities=17% Similarity=0.296 Sum_probs=140.8
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc-eeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA-SLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~ 133 (279)
...+|.+-|.++.|++.|+++|+|+.|++|+|||.+.... .+.. .-.-.|.+.|..+.|.+
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~--------------~W~~Ts~Wrah~~Si~rV~WAh---- 69 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG--------------TWSCTSSWRAHDGSIWRVVWAH---- 69 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC--------------ceEEeeeEEecCCcEEEEEecC----
Confidence 4568999999999999999999999999999999754321 1111 13445778999999933
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCC---------eeeEEEeccCccccccceeeEEECCC--CCEEEE-ecCCeEEEEEc
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTG---------LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFA-GYNKSVRVFDV 201 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~---------~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~-~~d~~i~~~d~ 201 (279)
..-|+.+|+++.|+++.||.-... ....++..... .|+.+.|.|. |-.+++ +.||.+|||+.
T Consensus 70 -PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrs-----sV~DV~FaP~hlGLklA~~~aDG~lRIYEA 143 (361)
T KOG2445|consen 70 -PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRS-----SVTDVKFAPKHLGLKLAAASADGILRIYEA 143 (361)
T ss_pred -ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCc-----ceeEEEecchhcceEEEEeccCcEEEEEec
Confidence 446899999999999999975211 12233333333 8999999997 556664 49999999998
Q ss_pred cCCCCc--ee---eeeecccccCCCCCceEEEEEccC--CCcEEEEEeCC-----CcEEEEecCCC----eEEEEEeecC
Q 023672 202 HRPGRD--FE---KYSTLKGNKEGQAGIMSAIAFSPT--HTGMLAIGSYS-----QTSAIYREDNM----ELLYVLHGQE 265 (279)
Q Consensus 202 ~~~~~~--~~---~~~~~~~~~~~~~~~v~~~~~sp~--~~~~l~~~~~d-----g~i~~wd~~~~----~~~~~~~~~~ 265 (279)
-.+... .. .++.+......+..+..|+.|+|. ...+|+.|+.+ +.++||....+ ..+.++.+|.
T Consensus 144 ~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~ 223 (361)
T KOG2445|consen 144 PDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT 223 (361)
T ss_pred CCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC
Confidence 653211 11 111111222456778889999982 24578888766 36888876533 3567888999
Q ss_pred CCEEEEEEccC
Q 023672 266 GGVTHVSKLSS 276 (279)
Q Consensus 266 ~~v~~~~~spd 276 (279)
++|++++|.|+
T Consensus 224 dpI~di~wAPn 234 (361)
T KOG2445|consen 224 DPIRDISWAPN 234 (361)
T ss_pred Ccceeeeeccc
Confidence 99999999996
No 132
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=2e-19 Score=147.81 Aligned_cols=184 Identities=17% Similarity=0.293 Sum_probs=140.9
Q ss_pred CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
-+-++++++|+.+|+++|.||.|-.|++-++...... ....+|..+|.++.| +|++
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~-----------------~~lrgh~apVl~l~~-------~p~~ 150 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQE-----------------KVLRGHDAPVLQLSY-------DPKG 150 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchh-----------------eeecccCCceeeeeE-------cCCC
Confidence 3456899999999999999999999999998754321 144567789999987 7789
Q ss_pred cEEEEecCCCcEEEEECCCCeeeEEEeccCcc---ccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeec
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAV---DEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTL 214 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~ 214 (279)
.+||+.+.||.|++||+.++.+...+..-... .....+..++|+|+|..++ .+.|+.|++|+.......+ .+
T Consensus 151 ~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f----~L 226 (933)
T KOG1274|consen 151 NFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF----KL 226 (933)
T ss_pred CEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe----ee
Confidence 99999999999999999998877666543221 1123567899999965554 6799999999998742222 22
Q ss_pred ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
.. ..+...+..+.|+| +|.+||+++.||.|.|||+.+-+. ......|.+++|.|++
T Consensus 227 r~--~~~ss~~~~~~wsP-nG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 227 RD--KLSSSKFSDLQWSP-NGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNA 282 (933)
T ss_pred cc--cccccceEEEEEcC-CCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCC
Confidence 11 23344599999999 999999999999999999988222 2234578999999875
No 133
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=1.3e-19 Score=135.88 Aligned_cols=172 Identities=22% Similarity=0.355 Sum_probs=131.7
Q ss_pred eeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 53 FRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
+....||++.|..++|+| +...||+||.|.+|.||++..+.+........ ....+|...|..+.|+|.
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepv----------v~L~gH~rrVg~V~wHPt- 142 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPV----------VELYGHQRRVGLVQWHPT- 142 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccce----------EEEeecceeEEEEeeccc-
Confidence 347789999999999999 66789999999999999998776544332221 244677889999999886
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~ 210 (279)
..+.|++++.|.+|.+||+.+|+.+.++. |.. .|++++|+.+|.++++. .|..|+|||.+++ ..
T Consensus 143 -----A~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd-----~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~-~~--- 207 (472)
T KOG0303|consen 143 -----APNVLLSAGSDNTVSIWNVGTGEALITLD-HPD-----MVYSMSFNRDGSLLCTTCKDKKVRVIDPRRG-TV--- 207 (472)
T ss_pred -----chhhHhhccCCceEEEEeccCCceeeecC-CCC-----eEEEEEeccCCceeeeecccceeEEEcCCCC-cE---
Confidence 34589999999999999999999888877 444 89999999999999954 9999999999984 22
Q ss_pred eeecccccCCCCC-ceEEEEEccCCCcEEEEEe---CCCcEEEEecCCC
Q 023672 211 YSTLKGNKEGQAG-IMSAIAFSPTHTGMLAIGS---YSQTSAIYREDNM 255 (279)
Q Consensus 211 ~~~~~~~~~~~~~-~v~~~~~sp~~~~~l~~~~---~dg~i~~wd~~~~ 255 (279)
...- .+|.+ ....+.|-. ++.++.+|- .+..+-|||..+.
T Consensus 208 v~e~----~~heG~k~~Raifl~-~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 208 VSEG----VAHEGAKPARAIFLA-SGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred eeec----ccccCCCcceeEEec-cCceeeeccccccccceeccCcccc
Confidence 2222 24433 344566777 677555553 4667999987654
No 134
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.85 E-value=5.9e-19 Score=136.38 Aligned_cols=207 Identities=17% Similarity=0.255 Sum_probs=146.5
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce-
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS- 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~- 113 (279)
.+.+|+..+.+... ...+|.+.|.++....+|.+| +|+.|..|..||-.-.+. .+... +.....+..
T Consensus 268 ~i~Iw~~~~~~~~k------~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~-r~~el----Pe~~G~iRtv 335 (626)
T KOG2106|consen 268 NILIWSKGTNRISK------QVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKL-RETEL----PEQFGPIRTV 335 (626)
T ss_pred eEEEEeCCCceEEe------EeeecCCceEEEEEecCccEe-ecCccceEEecccccccc-ccccC----chhcCCeeEE
Confidence 56788886666544 344899999999999999755 599999999999332111 11100 001111111
Q ss_pred ---------------------------eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec
Q 023672 114 ---------------------------LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA 166 (279)
Q Consensus 114 ---------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~ 166 (279)
....|+...+.+ +.+|+...+++++.|+.+++|+ ..++..+...
T Consensus 336 ~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgl-------a~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~ 406 (626)
T KOG2106|consen 336 AEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGL-------ATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII 406 (626)
T ss_pred ecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeE-------EcCCChhheeeccCcceEEEcc--CCceeEEEEe
Confidence 122233333333 5578888999999999999999 5566666555
Q ss_pred cCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC
Q 023672 167 YDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245 (279)
Q Consensus 167 ~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg 245 (279)
.. ++.|+.|+|.| .++.| ..|...+.|.++. .+.++. .. ..++++++|+| +|.+||.|+.|+
T Consensus 407 ~d------~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~-----~lv~~~---~d-~~~ls~v~ysp-~G~~lAvgs~d~ 469 (626)
T KOG2106|consen 407 ED------PAECADFHPSG-VVAVGTATGRWFVLDTETQ-----DLVTIH---TD-NEQLSVVRYSP-DGAFLAVGSHDN 469 (626)
T ss_pred cC------ceeEeeccCcc-eEEEeeccceEEEEecccc-----eeEEEE---ec-CCceEEEEEcC-CCCEEEEecCCC
Confidence 54 77899999999 77777 8999999999872 222221 22 67899999999 999999999999
Q ss_pred cEEEEecCCC-eEEEEEee-cCCCEEEEEEccCCCC
Q 023672 246 TSAIYREDNM-ELLYVLHG-QEGGVTHVSKLSSAYT 279 (279)
Q Consensus 246 ~i~~wd~~~~-~~~~~~~~-~~~~v~~~~~spdg~~ 279 (279)
.|+||.+..+ ........ +..+|+.+.||+|++|
T Consensus 470 ~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~ 505 (626)
T KOG2106|consen 470 HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQF 505 (626)
T ss_pred eEEEEEECCCCcEEEEeeeecCceeEEeeecCCCce
Confidence 9999998754 33333332 3479999999999986
No 135
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.85 E-value=2.7e-18 Score=133.95 Aligned_cols=229 Identities=14% Similarity=0.123 Sum_probs=141.1
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeE-EEeeCCCeEEEEeCCCCcccccccc----ccccCC---
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNA----CSLAKD--- 106 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~--- 106 (279)
.+.+||+.+++... .+..| ..+.+++|+|+++.+ ++++.++.|++||..+++....... ......
T Consensus 12 ~v~~~d~~t~~~~~------~~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g 84 (300)
T TIGR03866 12 TISVIDTATLEVTR------TFPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNG 84 (300)
T ss_pred EEEEEECCCCceEE------EEECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCC
Confidence 67889988877654 23333 336789999999876 5677899999999987654321110 000000
Q ss_pred --------CCcccceeeecCCCceEEEE--eeCcccccCCCCcEEEEecCCC-cEEEEECCCCeeeEEEeccCccccccc
Q 023672 107 --------QDSYEASLVVTEGESVYDFC--WFPHMSASDPTSCVFASTTRDH-PIHLWDATTGLLRCTYRAYDAVDEITA 175 (279)
Q Consensus 107 --------~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~~~~~~l~s~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~ 175 (279)
.+..+..+.......+..+. ..|..++++|++.++++++.++ .+.+||.++++....+.... .
T Consensus 85 ~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~------~ 158 (300)
T TIGR03866 85 KILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQ------R 158 (300)
T ss_pred CEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCC------C
Confidence 01111111111111122111 1245567889999998888765 46678988877665543322 4
Q ss_pred eeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEec
Q 023672 176 AFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYRE 252 (279)
Q Consensus 176 v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~ 252 (279)
+.+++|+|+++.++ ++ .++.|++||++++ +....+................++|+| ++.++ ++.+.++.+.+||+
T Consensus 159 ~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~ 236 (300)
T TIGR03866 159 PRFAEFTADGKELWVSSEIGGTVSVIDVATR-KVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDA 236 (300)
T ss_pred ccEEEECCCCCEEEEEcCCCCEEEEEEcCcc-eeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEEC
Confidence 56799999999886 45 6899999999874 222211100000000112345788999 77664 44455778999999
Q ss_pred CCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 253 DNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 253 ~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
++++.+..+. +...+.+++|+|+|++
T Consensus 237 ~~~~~~~~~~-~~~~~~~~~~~~~g~~ 262 (300)
T TIGR03866 237 KTYEVLDYLL-VGQRVWQLAFTPDEKY 262 (300)
T ss_pred CCCcEEEEEE-eCCCcceEEECCCCCE
Confidence 9988776654 4457899999999973
No 136
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=8.5e-20 Score=133.62 Aligned_cols=185 Identities=16% Similarity=0.255 Sum_probs=147.8
Q ss_pred eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
..+.+|.+.|.+..|-..|+.++++++|.+..+||++++.... ...+|...++.++-
T Consensus 266 ~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~-----------------~LtGHd~ELtHcst------ 322 (481)
T KOG0300|consen 266 MRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVN-----------------ILTGHDSELTHCST------ 322 (481)
T ss_pred eeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceec-----------------cccCcchhcccccc------
Confidence 3688999999999999999999999999999999999875532 22345555655544
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~ 212 (279)
+|..+++++++.|.+.++||.+.. ..+..|.+|.. .|++..|..+.+.+..+.|.+|++||+++...++..+.
T Consensus 323 -HptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd-----tVTS~vF~~dd~vVSgSDDrTvKvWdLrNMRsplATIR 396 (481)
T KOG0300|consen 323 -HPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD-----TVTSVVFNTDDRVVSGSDDRTVKVWDLRNMRSPLATIR 396 (481)
T ss_pred -CCcceEEEEeccCceeEeccchhhcceeeeeccccc-----ceeEEEEecCCceeecCCCceEEEeeeccccCcceeee
Confidence 677889999999999999999853 45677888877 89999999887665556999999999998655544332
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE----EEEEeecCCCEEEEEEccC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~~v~~~~~spd 276 (279)
-..+++.++.+. ++.+++.--.+..|++||+....+ ...-++|...|.+++|..+
T Consensus 397 --------tdS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~ee 455 (481)
T KOG0300|consen 397 --------TDSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEE 455 (481)
T ss_pred --------cCCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeecccc
Confidence 246789999999 888999999999999999965442 2244578889999999854
No 137
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=3.3e-19 Score=142.47 Aligned_cols=206 Identities=12% Similarity=0.193 Sum_probs=154.9
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
++++||...+.++. +++||.+.|.|++|+.||+++|+|+.|..|.+|.-.-... +
T Consensus 34 rlliyD~ndG~llq------tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~-------------------L 88 (1081)
T KOG1538|consen 34 RLLVYDTSDGTLLQ------PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGI-------------------L 88 (1081)
T ss_pred EEEEEeCCCccccc------ccccccceEEEEEEccCCceeccCCCceeEEEecccccce-------------------e
Confidence 67899999998887 8999999999999999999999999999999998653322 3
Q ss_pred eecCCCceEEEEeeCc--------------------------------ccccCCCCcEEEEecCCCcEEEEECCCCeeeE
Q 023672 115 VVTEGESVYDFCWFPH--------------------------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRC 162 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~--------------------------------~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~ 162 (279)
...|+..|.++.|+|- +.++..||++++.|-.+|+|.+-+- +++...
T Consensus 89 kYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~ 167 (1081)
T KOG1538|consen 89 KYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKV 167 (1081)
T ss_pred eeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC-CCCcce
Confidence 4455556666666552 3456889999999999999998763 455444
Q ss_pred EEeccCccccccceeeEEECCCC-----CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc
Q 023672 163 TYRAYDAVDEITAAFSVAFNPTG-----TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236 (279)
Q Consensus 163 ~~~~~~~~~~~~~v~~~~~~~~~-----~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 236 (279)
.+..++ +...+|++++|+|.. ..+++. -..++.+|.+.. .....- ..-.-...|+.+.| +|.
T Consensus 168 ~I~Rpg--g~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG--~~Igk~-------r~L~FdP~CisYf~-NGE 235 (1081)
T KOG1538|consen 168 KIERPG--GSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG--KQIGKD-------RALNFDPCCISYFT-NGE 235 (1081)
T ss_pred EEeCCC--CCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc--eeeccc-------ccCCCCchhheecc-CCc
Confidence 444322 233489999999973 234433 566666666653 111111 22234567899999 999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 237 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
+++.|+.|+.+.+|- +.|-.+.++...+.+|+.++..|+|++
T Consensus 236 y~LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~PNsQ~ 277 (1081)
T KOG1538|consen 236 YILLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKPNSQY 277 (1081)
T ss_pred EEEEccCCCceEEEe-ecCeEEeeccccceeEEEEEEccCCce
Confidence 999999999999996 778888888878889999999999985
No 138
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.85 E-value=9.3e-20 Score=131.53 Aligned_cols=200 Identities=17% Similarity=0.183 Sum_probs=145.9
Q ss_pred ccCCCCCceEEEEEcc-CCCeEEEeeCC-------CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEE
Q 023672 55 TSSIPNNFLKGIKWSP-DGSSFLTSSED-------KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFC 126 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (279)
.+..|.+.|..++-+| +.+.|+|+-.+ -.+.||.+.+........ .-..+..+...+-+.|.++.
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~-------tlE~v~~Ldteavg~i~cve 130 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSS-------TLECVASLDTEAVGKINCVE 130 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccc-------hhhHhhcCCHHHhCceeeEE
Confidence 5667889999999999 55566665442 236799997643221111 01122334433444888998
Q ss_pred eeCcccccCCCCcEEEEecCCCcEEEEECCCCee-eEEEeccCccccccceeeEEECC--CCCEEEEecCCeEEEEEccC
Q 023672 127 WFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNP--TGTKIFAGYNKSVRVFDVHR 203 (279)
Q Consensus 127 ~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~d~~i~~~d~~~ 203 (279)
| .|++..+++-. |..|.+|++..+.. +..+.......+....++-+|+| +++.+++..|+++..||+|+
T Consensus 131 w-------~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT 202 (370)
T KOG1007|consen 131 W-------EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRT 202 (370)
T ss_pred E-------cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccc
Confidence 8 45677787766 88899999987755 55555444433344678889999 68888888999999999998
Q ss_pred CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEEeecCCCEEEEEEccC
Q 023672 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~spd 276 (279)
. .+...+. .+|...|..+.|+|+...+|++|+.||.|+|||.|. ..++..+.+|..+|+++.|+|.
T Consensus 203 ~----~~~~sI~---dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~ 269 (370)
T KOG1007|consen 203 M----KKNNSIE---DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPE 269 (370)
T ss_pred h----hhhcchh---hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCc
Confidence 4 2222232 678889999999996667899999999999999985 4688999999999999999983
No 139
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.84 E-value=2.5e-19 Score=129.38 Aligned_cols=188 Identities=19% Similarity=0.311 Sum_probs=139.7
Q ss_pred CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (279)
.+-+.|.|+.|.|++..+++-. |..|.+|++.++...... .. ......+....++-.|+|+ .+
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vae--v~---------ss~s~e~~~~ftsg~WspH-----Hd 183 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAE--VL---------SSESAEMRHSFTSGAWSPH-----HD 183 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhee--ec---------ccccccccceecccccCCC-----Cc
Confidence 4557899999999999998776 789999999876432110 00 0011123345666778763 37
Q ss_pred CcEEEEecCCCcEEEEECCCCeeeEEEec-cCccccccceeeEEECCCCCEEE-E-ecCCeEEEEEccCCCCceeeeeec
Q 023672 138 SCVFASTTRDHPIHLWDATTGLLRCTYRA-YDAVDEITAAFSVAFNPTGTKIF-A-GYNKSVRVFDVHRPGRDFEKYSTL 214 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~-~-~~d~~i~~~d~~~~~~~~~~~~~~ 214 (279)
++.+++.+ |+++..||+++.+....+.. |.. .|..+.|+|+-++++ + |.||.|++||.|....+... +
T Consensus 184 gnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq-----~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e---l 254 (370)
T KOG1007|consen 184 GNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQ-----RVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE---L 254 (370)
T ss_pred cceEEEeC-CCcEEEEEccchhhhcchhhhhcc-----eeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc---c
Confidence 77777665 88999999998877666553 333 789999999976655 4 49999999999985443332 2
Q ss_pred ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-----------------------------eEEEEEeecC
Q 023672 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------------------------ELLYVLHGQE 265 (279)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-----------------------------~~~~~~~~~~ 265 (279)
.+|...|.++.|+|...+++++|+.|..|.+|...+- ..+.++..|+
T Consensus 255 ----~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE 330 (370)
T KOG1007|consen 255 ----PGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE 330 (370)
T ss_pred ----CCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc
Confidence 7999999999999988889999999999999965321 1345778899
Q ss_pred CCEEEEEEcc
Q 023672 266 GGVTHVSKLS 275 (279)
Q Consensus 266 ~~v~~~~~sp 275 (279)
+.|.+++||.
T Consensus 331 DSVY~~aWSs 340 (370)
T KOG1007|consen 331 DSVYALAWSS 340 (370)
T ss_pred cceEEEeecc
Confidence 9999999985
No 140
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=8.9e-19 Score=127.42 Aligned_cols=179 Identities=18% Similarity=0.305 Sum_probs=133.9
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
......+.|+.|.|+|.++.|+++++||++++||+..... .....++.++.+++|.
T Consensus 8 l~npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l------------------~~~~~~~~plL~c~F~------ 63 (323)
T KOG1036|consen 8 LENPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL------------------KLKFKHGAPLLDCAFA------ 63 (323)
T ss_pred cCCCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh------------------hhheecCCceeeeecc------
Confidence 3445678899999999999999999999999999986422 2456788899999984
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+...+++|+.||.|+.+|+.++..... ..|.. ++.|+.+++....+++| -|++|++||.+.. .....
T Consensus 64 --d~~~~~~G~~dg~vr~~Dln~~~~~~i-gth~~-----~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~----~~~~~ 131 (323)
T KOG1036|consen 64 --DESTIVTGGLDGQVRRYDLNTGNEDQI-GTHDE-----GIRCIEYSYEVGCVISGSWDKTIKFWDPRNK----VVVGT 131 (323)
T ss_pred --CCceEEEeccCceEEEEEecCCcceee-ccCCC-----ceEEEEeeccCCeEEEcccCccEEEEecccc----ccccc
Confidence 345789999999999999998875443 34444 89999999876666655 9999999999962 11111
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe--ecCCCEEEEEEccCC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGGVTHVSKLSSA 277 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~v~~~~~spdg 277 (279)
+ .....|.++.. .+..|+.|+.|..+.+||+++........ ...-.++++++-|++
T Consensus 132 ~-----d~~kkVy~~~v---~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~ 189 (323)
T KOG1036|consen 132 F-----DQGKKVYCMDV---SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG 189 (323)
T ss_pred c-----ccCceEEEEec---cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCC
Confidence 1 22236776665 56789999999999999999876443222 123467888888843
No 141
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.84 E-value=1.3e-20 Score=141.89 Aligned_cols=184 Identities=10% Similarity=0.188 Sum_probs=149.2
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+..|.+.|..+.|-++...|++|+.|..|++|+....+... . ....+..++|+.+.|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~--------------~-~tLaGs~g~it~~d~------- 227 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSEL--------------I-STLAGSLGNITSIDF------- 227 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhh--------------h-hhhhccCCCcceeee-------
Confidence 678899999999999998899999999999999998654210 0 022344467888866
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
.+++.++++++.|+.+++|++.+.+...++.+|.. .|+++.|......+++| .|.+|++||+... .+..+
T Consensus 228 d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtd-----kVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~----~C~kt 298 (459)
T KOG0288|consen 228 DSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTD-----KVTAAKFKLSHSRVVSGSADRTIKLWDLQKA----YCSKT 298 (459)
T ss_pred cCCCceEEeecCCCceeeeeccchhhhhhhccccc-----ceeeehhhccccceeeccccchhhhhhhhhh----heecc
Confidence 77899999999999999999999999999999887 99999998877667766 9999999999873 33323
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+ -....+..|+.++ ..+++|..|++|++||.++..+....+.+. .|+++..+++|.
T Consensus 299 ~-----l~~S~cnDI~~~~---~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~ 354 (459)
T KOG0288|consen 299 V-----LPGSQCNDIVCSI---SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGL 354 (459)
T ss_pred c-----cccccccceEecc---eeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCe
Confidence 2 1123466666654 678899999999999999999999998765 899999999885
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.83 E-value=9.4e-18 Score=130.88 Aligned_cols=223 Identities=12% Similarity=0.082 Sum_probs=139.2
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEE-eeCCCeEEEEeCCCCcccccccc----ccccCCCCc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLT-SSEDKTLRIFSLPENGISYDVNA----CSLAKDQDS 109 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~~~~ 109 (279)
.+++||..+++... .+..+.. +..++|+|+++.+++ ++.|+.|++||+.+......... .......+.
T Consensus 54 ~v~~~d~~~~~~~~------~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg 126 (300)
T TIGR03866 54 TIQVIDLATGEVIG------TLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDG 126 (300)
T ss_pred eEEEEECCCCcEEE------eccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCC
Confidence 46678877766543 2333333 567899999997765 45689999999987653221110 000000111
Q ss_pred -cc----------ceeeecCCCceEE--EEeeCcccccCCCCcEEEE-ecCCCcEEEEECCCCeeeEEEeccCcc--ccc
Q 023672 110 -YE----------ASLVVTEGESVYD--FCWFPHMSASDPTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYDAV--DEI 173 (279)
Q Consensus 110 -~~----------~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~l~s-~~~d~~i~i~d~~~~~~~~~~~~~~~~--~~~ 173 (279)
.. ..+.......+.. ....|..++++|+++.++. +..++.|++||+++++.+..+...... ...
T Consensus 127 ~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~ 206 (300)
T TIGR03866 127 KIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEA 206 (300)
T ss_pred CEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccccccccc
Confidence 00 0001100101111 1123445678999998854 456899999999998877666532110 001
Q ss_pred cceeeEEECCCCCEEEE--ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEE
Q 023672 174 TAAFSVAFNPTGTKIFA--GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIY 250 (279)
Q Consensus 174 ~~v~~~~~~~~~~~l~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~w 250 (279)
.....++|+|+++++++ +.++.+.+||+++. +.. ..+ .+...+.+++|+| ++.+|+++ +.+|.|.+|
T Consensus 207 ~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~-~~~---~~~-----~~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~ 276 (300)
T TIGR03866 207 VQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY-EVL---DYL-----LVGQRVWQLAFTP-DEKYLLTTNGVSNDVSVI 276 (300)
T ss_pred CCccceEECCCCCEEEEEcCCCCeEEEEECCCC-cEE---EEE-----EeCCCcceEEECC-CCCEEEEEcCCCCeEEEE
Confidence 13457899999998663 36778999999863 221 111 1234688999999 78888775 568999999
Q ss_pred ecCCCeEEEEEeecCCCEEEEEEcc
Q 023672 251 REDNMELLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 251 d~~~~~~~~~~~~~~~~v~~~~~sp 275 (279)
|+++++++..++.. ..+++++|+|
T Consensus 277 d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 277 DVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred ECCCCcEEEEEEcc-cccceeEeCC
Confidence 99999999999854 5569999986
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=1e-19 Score=143.22 Aligned_cols=215 Identities=18% Similarity=0.299 Sum_probs=154.2
Q ss_pred cCCCCccccee--eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc---------------cc
Q 023672 40 DVPPHRTYHFY--NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA---------------CS 102 (279)
Q Consensus 40 d~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~---------------~~ 102 (279)
++++.+.++.+ .+...+.||++.|.||+..|.|.+|++|+.||+|+||.+.++.+...... +.
T Consensus 378 kLPsp~dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~v 457 (733)
T KOG0650|consen 378 KLPSPKDLRPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCV 457 (733)
T ss_pred cCCChhhcCCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCcee
Confidence 44555544433 34457889999999999999999999999999999999999876211000 00
Q ss_pred cc----------------------------CC---C----------------CcccceeeecCCCceEEEEeeCcccccC
Q 023672 103 LA----------------------------KD---Q----------------DSYEASLVVTEGESVYDFCWFPHMSASD 135 (279)
Q Consensus 103 ~~----------------------------~~---~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (279)
++ .. . ......+...+..+|..+.| +
T Consensus 458 LAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtW-------H 530 (733)
T KOG0650|consen 458 LAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTW-------H 530 (733)
T ss_pred EEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeee-------e
Confidence 00 00 0 00001233344445555555 7
Q ss_pred CCCcEEEEecCC---CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672 136 PTSCVFASTTRD---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 136 ~~~~~l~s~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~ 212 (279)
..|.+|++...+ ..|.|+++........|..... .|.++.|+|...+++++....|++||+...
T Consensus 531 rkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG-----~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq-------- 597 (733)
T KOG0650|consen 531 RKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKG-----LVQRVKFHPSKPYLFVATQRSVRIYDLSKQ-------- 597 (733)
T ss_pred cCCceEEEeccCCCcceEEEEecccccccCchhhcCC-----ceeEEEecCCCceEEEEeccceEEEehhHH--------
Confidence 789999987654 4688999887766655544333 788999999999999998899999999862
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEEeecCCCEEEEEEcc
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~~~~~~~v~~~~~sp 275 (279)
.+...+......|.+++.+| +|.-|+.|+.|+.+..+|+.-+ ++..++..|...+++++||+
T Consensus 598 elvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ 660 (733)
T KOG0650|consen 598 ELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK 660 (733)
T ss_pred HHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc
Confidence 12111123355799999999 9999999999999999999744 67788888999999999885
No 144
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=1.4e-18 Score=132.83 Aligned_cols=180 Identities=13% Similarity=0.179 Sum_probs=143.3
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|.+.. +...|-.+|+++.| +-|+.
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~-----------------v~~aHYQ~ITcL~f-------s~dgs 136 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN-----------------VLSAHYQSITCLKF-------SDDGS 136 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH-----------------HHHhhccceeEEEE-------eCCCc
Confidence 4679999999999999999899999999999986643 23456678999977 77999
Q ss_pred EEEEecCCCcEEEEECCC---------CeeeEEEeccCccccccceeeEEECCCC--CEEE-EecCCeEEEEEccCCCCc
Q 023672 140 VFASTTRDHPIHLWDATT---------GLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIF-AGYNKSVRVFDVHRPGRD 207 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~-~~~d~~i~~~d~~~~~~~ 207 (279)
+|++|+.||.|.+|.+.+ -++...+..|.- +|+++...+.| ..++ ++.|.++++||+..+
T Consensus 137 ~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htl-----sITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g--- 208 (476)
T KOG0646|consen 137 HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTL-----SITDLQIGSGGTNARLYTASEDRTIKLWDLSLG--- 208 (476)
T ss_pred EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcc-----eeEEEEecCCCccceEEEecCCceEEEEEeccc---
Confidence 999999999999998742 245566666665 89998887653 4455 669999999999985
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC----------------eEEEEEeecCC--CEE
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM----------------ELLYVLHGQEG--GVT 269 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~----------------~~~~~~~~~~~--~v~ 269 (279)
..+.++ .....+.+++.+| .+..++.|+++|.|.+.++.+. ..+..+.+|.+ .|+
T Consensus 209 -~LLlti-----~fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~IT 281 (476)
T KOG0646|consen 209 -VLLLTI-----TFPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAIT 281 (476)
T ss_pred -eeeEEE-----ecCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCccee
Confidence 333232 2345799999999 9999999999999998887432 24567788988 999
Q ss_pred EEEEccCCC
Q 023672 270 HVSKLSSAY 278 (279)
Q Consensus 270 ~~~~spdg~ 278 (279)
+++.+-||.
T Consensus 282 cLais~Dgt 290 (476)
T KOG0646|consen 282 CLAISTDGT 290 (476)
T ss_pred EEEEecCcc
Confidence 999999984
No 145
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.6e-19 Score=133.93 Aligned_cols=184 Identities=22% Similarity=0.274 Sum_probs=136.3
Q ss_pred EEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (279)
Q Consensus 64 ~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 143 (279)
.+++|+++|..|++|+.||+++||++....... ....|...|.++.| +|||++|++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-----------------~e~~~~~eV~DL~F-------S~dgk~las 203 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-----------------EEIAHHAEVKDLDF-------SPDGKFLAS 203 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhh-----------------hhHhhcCcccccee-------CCCCcEEEE
Confidence 789999999999999999999999977542211 23445668888866 889999999
Q ss_pred ecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC---C-EEEEe--cCCeEEEEEccCCCCceeeeeecccc
Q 023672 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG---T-KIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (279)
Q Consensus 144 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~-~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~ 217 (279)
.+.| ..+||+++++..+........ ......+.|+.++ . ++++. ..+.|+.||+...... ... .....
T Consensus 204 ig~d-~~~VW~~~~g~~~a~~t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~-~~l-~~~~~ 277 (398)
T KOG0771|consen 204 IGAD-SARVWSVNTGAALARKTPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGS-NFL-RLRKK 277 (398)
T ss_pred ecCC-ceEEEEeccCchhhhcCCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccc-ccc-chhhh
Confidence 9999 899999999976665543221 1245678888776 2 23333 5677888887653221 111 11111
Q ss_pred cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEccCCCC
Q 023672 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~spdg~~ 279 (279)
......|.+++.++ +|.+++.|+.||.|.|++..+.+.++.++ .|..-|+++.|+||.++
T Consensus 278 -~~~~~siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~ 338 (398)
T KOG0771|consen 278 -IKRFKSISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRY 338 (398)
T ss_pred -hhccCcceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCc
Confidence 12233699999999 99999999999999999999998887665 58999999999999875
No 146
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.83 E-value=4.2e-19 Score=133.57 Aligned_cols=163 Identities=14% Similarity=0.217 Sum_probs=116.4
Q ss_pred hcccceeeeeeEecCCCCcccc---eeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc
Q 023672 27 ENQQEYTWPLIRFDVPPHRTYH---FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL 103 (279)
Q Consensus 27 ~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 103 (279)
.+.......+++|.+.....-. .......+..|..+|+++.|+|+|..||+|+.+|.|.+|....-....... +..
T Consensus 29 laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~-e~~ 107 (434)
T KOG1009|consen 29 LATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT-EAD 107 (434)
T ss_pred eecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc-hhh
Confidence 3344445566666655444333 334445789999999999999999999999999999999876421110000 000
Q ss_pred cCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672 104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (279)
.....-.+......|...++.++| +|++.++++++.|..+++||+..|+....+..|.. .+..++|.|
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~W-------s~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~-----yvqgvawDp 175 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAW-------SPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEH-----YVQGVAWDP 175 (434)
T ss_pred hCccceEEEEEecccccchhhhhc-------cCCCceeeeeeccceEEEEEeccceeEeecccccc-----ccceeecch
Confidence 001111223344557789999988 77899999999999999999999999999988887 889999999
Q ss_pred CCCEEEE-ecCCeEEEEEcc
Q 023672 184 TGTKIFA-GYNKSVRVFDVH 202 (279)
Q Consensus 184 ~~~~l~~-~~d~~i~~~d~~ 202 (279)
-++++++ +.|...+.+.+.
T Consensus 176 l~qyv~s~s~dr~~~~~~~~ 195 (434)
T KOG1009|consen 176 LNQYVASKSSDRHPEGFSAK 195 (434)
T ss_pred hhhhhhhhccCcccceeeee
Confidence 9888884 466655555554
No 147
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=5.8e-19 Score=139.86 Aligned_cols=181 Identities=18% Similarity=0.286 Sum_probs=123.3
Q ss_pred eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
+....+|.++|..+.|.|....|++++.|.++++||+.+.++.... +..+|...|.++||.|.
T Consensus 93 lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~---------------~~~GH~~SvkS~cf~~~-- 155 (720)
T KOG0321|consen 93 LKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR---------------LNLGHTGSVKSECFMPT-- 155 (720)
T ss_pred hcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce---------------eecccccccchhhhccC--
Confidence 3467789999999999996678999999999999999976553211 45678889999999775
Q ss_pred ccCCCCcEEEEecCCCcEEEEECCCCeee-------EEEec---------------cCccccccceee---EEECCCCCE
Q 023672 133 ASDPTSCVFASTTRDHPIHLWDATTGLLR-------CTYRA---------------YDAVDEITAAFS---VAFNPTGTK 187 (279)
Q Consensus 133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~-------~~~~~---------------~~~~~~~~~v~~---~~~~~~~~~ 187 (279)
+...|++|+.||.|.|||++-...- ..... +....+...|.+ +.+..|...
T Consensus 156 ----n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 156 ----NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST 231 (720)
T ss_pred ----CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence 4558999999999999999743200 00000 000111112333 445556667
Q ss_pred EE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCC---CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672 188 IF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ---AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (279)
Q Consensus 188 l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~ 255 (279)
|+ +| .|+.|+|||+++.....+.-..-...+..| ...+.++.... .|.+|++.+.|+.|++||+++-
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDs-sGt~L~AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDS-SGTYLFASCTDNSIYFYNMRSL 303 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecC-CCCeEEEEecCCcEEEEecccc
Confidence 77 66 699999999998543332211111111222 34577888877 6777777777999999999864
No 148
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=3.6e-18 Score=136.19 Aligned_cols=198 Identities=17% Similarity=0.214 Sum_probs=137.3
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc---------
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH--------- 130 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------- 130 (279)
...|.+|||+.+.+.||.+-.||.|.||++..+-.... .+..+....|..++|.+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~---------------vi~g~~drsIE~L~W~e~~RLFS~g~s 89 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP---------------VIHGPEDRSIESLAWAEGGRLFSSGLS 89 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE---------------EEecCCCCceeeEEEccCCeEEeecCC
Confidence 45699999999999999999999999999986432111 122333345555555321
Q ss_pred -------------------------ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC
Q 023672 131 -------------------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG 185 (279)
Q Consensus 131 -------------------------~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (279)
+++.+|.+..++.|+.||.+..++...++.......... .+.+.+++|+|++
T Consensus 90 g~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq---~sRvLslsw~~~~ 166 (691)
T KOG2048|consen 90 GSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQ---KSRVLSLSWNPTG 166 (691)
T ss_pred ceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccc---cceEEEEEecCCc
Confidence 234456666677777777666666655544433322221 1278999999999
Q ss_pred CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
..+++| .||.|++||...+.......+.+....++...-|+++.|-. + ..|++|...|+|.+||...+.++..+..|
T Consensus 167 ~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h 244 (691)
T KOG2048|consen 167 TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-D-STIASGDSAGTVTFWDSIFGTLIQSHSCH 244 (691)
T ss_pred cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-c-CcEEEecCCceEEEEcccCcchhhhhhhh
Confidence 999977 99999999999853222111112222122344577777765 4 47999999999999999999999999999
Q ss_pred CCCEEEEEEccCC
Q 023672 265 EGGVTHVSKLSSA 277 (279)
Q Consensus 265 ~~~v~~~~~spdg 277 (279)
...|.+|+..+++
T Consensus 245 ~adVl~Lav~~~~ 257 (691)
T KOG2048|consen 245 DADVLALAVADNE 257 (691)
T ss_pred hcceeEEEEcCCC
Confidence 9999999998875
No 149
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.82 E-value=1.7e-18 Score=125.69 Aligned_cols=171 Identities=19% Similarity=0.345 Sum_probs=126.4
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+++|++.....+.. +....|.++|.+++|+.||..+++|+.|+.+++||+.+++.. .
T Consensus 51 tVR~wevq~~g~~~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~------------------~ 108 (347)
T KOG0647|consen 51 TVRIWEVQNSGQLVP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS------------------Q 108 (347)
T ss_pred ceEEEEEecCCcccc----hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee------------------e
Confidence 677888766422211 356679999999999999999999999999999999987542 3
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcc------------------------
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAV------------------------ 170 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~------------------------ 170 (279)
...|..+|..+.|-+. .....|++||.|.+|+.||.+...++.++..++..
T Consensus 109 v~~Hd~pvkt~~wv~~-----~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL 183 (347)
T KOG0647|consen 109 VAAHDAPVKTCHWVPG-----MNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNL 183 (347)
T ss_pred eeecccceeEEEEecC-----CCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEc
Confidence 4567789999988553 23558899999999999999876655443222110
Q ss_pred -----------------------------------------------------------------ccccceeeEEECCCC
Q 023672 171 -----------------------------------------------------------------DEITAAFSVAFNPTG 185 (279)
Q Consensus 171 -----------------------------------------------------------------~~~~~v~~~~~~~~~ 185 (279)
+....|.+|+|+|..
T Consensus 184 ~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h 263 (347)
T KOG0647|consen 184 ENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH 263 (347)
T ss_pred CCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc
Confidence 113467889999987
Q ss_pred CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE
Q 023672 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241 (279)
Q Consensus 186 ~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~ 241 (279)
..|+ +|.||++.+||-... ..+.. .+.|..+|++++|+. +|.+++.+
T Consensus 264 gtlvTaGsDGtf~FWDkdar----~kLk~----s~~~~qpItcc~fn~-~G~ifaYA 311 (347)
T KOG0647|consen 264 GTLVTAGSDGTFSFWDKDAR----TKLKT----SETHPQPITCCSFNR-NGSIFAYA 311 (347)
T ss_pred ceEEEecCCceEEEecchhh----hhhhc----cCcCCCccceeEecC-CCCEEEEE
Confidence 6666 679999999998763 11112 257788999999999 88887765
No 150
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=4.1e-19 Score=140.72 Aligned_cols=227 Identities=16% Similarity=0.178 Sum_probs=146.3
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccC-------C
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK-------D 106 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~-------~ 106 (279)
.+..||+....+.. .+...||.+.|.+++|.|. ...|++|++||.|.|||++-.........+.... .
T Consensus 123 T~r~Wdvk~s~l~G----~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~pt 198 (720)
T KOG0321|consen 123 TIRPWDVKTSRLVG----GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPT 198 (720)
T ss_pred eeeeeeeccceeec----ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCC
Confidence 56788888888765 2257899999999999994 4578899999999999997554211100000000 0
Q ss_pred CCcc---cceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCcEEEEECCCCeeeEE------EeccCccccccce
Q 023672 107 QDSY---EASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCT------YRAYDAVDEITAA 176 (279)
Q Consensus 107 ~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~i~d~~~~~~~~~------~~~~~~~~~~~~v 176 (279)
..+. .......++..|..-. .+.+..|...||+++. |+.|+|||++....... ...+........+
T Consensus 199 pskp~~kr~~k~kA~s~ti~ssv----Tvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~ 274 (720)
T KOG0321|consen 199 PSKPLKKRIRKWKAASNTIFSSV----TVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQ 274 (720)
T ss_pred CCchhhccccccccccCceeeee----EEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeee
Confidence 0000 0001112222232200 0122457778999887 99999999997543222 2222221222367
Q ss_pred eeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCC--CceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 177 FSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA--GIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 177 ~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
.++.....|.+++++ .|+.|++|++..-+.. ....+ .++. .....-..+| ++.+|++|+.|...++|.+.
T Consensus 275 ~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s--P~~~~----sg~~~~sf~vks~lSp-d~~~l~SgSsd~~ayiw~vs 347 (720)
T KOG0321|consen 275 VNLILDSSGTYLFASCTDNSIYFYNMRSLSIS--PVAEF----SGKLNSSFYVKSELSP-DDCSLLSGSSDEQAYIWVVS 347 (720)
T ss_pred EEEEecCCCCeEEEEecCCcEEEEeccccCcC--chhhc----cCcccceeeeeeecCC-CCceEeccCCCcceeeeeec
Confidence 788888889888855 9999999999863211 11111 2221 1233446789 89999999999999999998
Q ss_pred CCe-EEEEEeecCCCEEEEEEccC
Q 023672 254 NME-LLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 254 ~~~-~~~~~~~~~~~v~~~~~spd 276 (279)
+.+ ....+.+|.-.|++++|.|.
T Consensus 348 ~~e~~~~~l~Ght~eVt~V~w~pS 371 (720)
T KOG0321|consen 348 SPEAPPALLLGHTREVTTVRWLPS 371 (720)
T ss_pred CccCChhhhhCcceEEEEEeeccc
Confidence 765 45677889999999999885
No 151
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=1e-18 Score=133.41 Aligned_cols=205 Identities=15% Similarity=0.096 Sum_probs=140.5
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
.+-+||+.+.... ........+|.+.|.+|.|+| +-..+++.|.||+|++-|+++......
T Consensus 211 ~VG~Wn~~~~~~d--~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v---------------- 272 (498)
T KOG4328|consen 211 QVGLWNFGTQEKD--KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEV---------------- 272 (498)
T ss_pred cEEEEecCCCCCc--cCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHH----------------
Confidence 5667777422211 122236778999999999999 556899999999999999986533111
Q ss_pred eeec-CCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee-eEEEeccCccccccceeeEEECCCCCEE-EE
Q 023672 114 LVVT-EGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKI-FA 190 (279)
Q Consensus 114 ~~~~-~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~ 190 (279)
+... ....+..+ .|+.+...++.+..=|...+||++++.. ...+..|.. .|.+++++|...++ ++
T Consensus 273 ~s~~~d~~~fs~~-------d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k-----KI~sv~~NP~~p~~laT 340 (498)
T KOG4328|consen 273 LSLDTDNIWFSSL-------DFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK-----KITSVALNPVCPWFLAT 340 (498)
T ss_pred hhcCccceeeeec-------cccCCCccEEEeecccceEEEEeecCCccchhhhhhhc-----ccceeecCCCCchheee
Confidence 0010 11122222 4566777788887777999999998654 666667766 89999999987554 44
Q ss_pred -ecCCeEEEEEccCCCCcee-eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC----CCeEEEEEeec
Q 023672 191 -GYNKSVRVFDVHRPGRDFE-KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED----NMELLYVLHGQ 264 (279)
Q Consensus 191 -~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~----~~~~~~~~~~~ 264 (279)
|.|++++|||+|.-..... .+.. ..|...|.++.|||.++. |++.+.|..|+|||.. .-.++..+. |
T Consensus 341 ~s~D~T~kIWD~R~l~~K~sp~lst-----~~HrrsV~sAyFSPs~gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~-H 413 (498)
T KOG4328|consen 341 ASLDQTAKIWDLRQLRGKASPFLST-----LPHRRSVNSAYFSPSGGT-LLTTCQDNEIRVFDSSCISAKDEPLGTIP-H 413 (498)
T ss_pred cccCcceeeeehhhhcCCCCcceec-----ccccceeeeeEEcCCCCc-eEeeccCCceEEeecccccccCCccceee-c
Confidence 4999999999997432221 2223 488899999999995555 9999999999999983 334444554 3
Q ss_pred CC------CEEEEEEccC
Q 023672 265 EG------GVTHVSKLSS 276 (279)
Q Consensus 265 ~~------~v~~~~~spd 276 (279)
+. .....+|.||
T Consensus 414 n~~t~RwlT~fKA~W~P~ 431 (498)
T KOG4328|consen 414 NNRTGRWLTPFKAAWDPD 431 (498)
T ss_pred cCcccccccchhheeCCC
Confidence 32 2344567775
No 152
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=5.3e-19 Score=136.48 Aligned_cols=181 Identities=14% Similarity=0.164 Sum_probs=142.7
Q ss_pred eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (279)
-.|++......++++|+..+.|+|||+....+. .....|...|+.+.| +....+||
T Consensus 82 ~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~h-----------------r~lkdh~stvt~v~Y-------N~~DeyiA 137 (673)
T KOG4378|consen 82 AFCVACASQSLYEISGGQSGCVKIWDLRAKLIH-----------------RFLKDHQSTVTYVDY-------NNTDEYIA 137 (673)
T ss_pred HHHHhhhhcceeeeccCcCceeeehhhHHHHHh-----------------hhccCCcceeEEEEe-------cCCcceeE
Confidence 345555555589999999999999999843221 123345678998888 45677999
Q ss_pred EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--EecCCeEEEEEccCCCCceeeeeecccccCC
Q 023672 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEG 220 (279)
Q Consensus 143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 220 (279)
+++..|.|.|..+.++.....+..... ..|.-+.|+|..++++ ++.+|.|.+||+... . .+....+.
T Consensus 138 svs~gGdiiih~~~t~~~tt~f~~~sg----qsvRll~ys~skr~lL~~asd~G~VtlwDv~g~-s------p~~~~~~~ 206 (673)
T KOG4378|consen 138 SVSDGGDIIIHGTKTKQKTTTFTIDSG----QSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGM-S------PIFHASEA 206 (673)
T ss_pred EeccCCcEEEEecccCccccceecCCC----CeEEEeecccccceeeEeeccCCeEEEEeccCC-C------cccchhhh
Confidence 999999999999999887777766532 2677899999988887 458999999999863 1 12222268
Q ss_pred CCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 221 QAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 221 ~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
|..+...+||+|-+..+|++.+.|..|.+||.+..+....+. .+.+...++|+++|.|
T Consensus 207 HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 207 HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-YSHPLSTVAFSECGTY 264 (673)
T ss_pred ccCCcCcceecCCccceEEEecccceEEEeecccccccceee-ecCCcceeeecCCceE
Confidence 999999999999888899999999999999999877777776 5678999999999965
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.80 E-value=2.8e-18 Score=138.13 Aligned_cols=210 Identities=14% Similarity=0.176 Sum_probs=154.8
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc---CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
.++++++..-+... ...+|...|.|+.|+. ..++||++++|..|.|||+.......
T Consensus 482 nlrVy~Lq~l~~~~------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~--------------- 540 (1080)
T KOG1408|consen 482 NLRVYDLQELEYTC------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLV--------------- 540 (1080)
T ss_pred ceEEEEehhhhhhh------heecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchh---------------
Confidence 44555554444333 6789999999999986 34689999999999999997542211
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-CeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (279)
...-.|...|+++.|. .+.-...+++++.|..|.+ +... ......+..+...-....++.|+..|..+++++
T Consensus 541 -qtld~HSssITsvKFa-----~~gln~~MiscGADksimF-r~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t 613 (1080)
T KOG1408|consen 541 -QTLDGHSSSITSVKFA-----CNGLNRKMISCGADKSIMF-RVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVT 613 (1080)
T ss_pred -hhhcccccceeEEEEe-----ecCCceEEEeccCchhhhe-ehhccccCceeccccccccccceEEEeeeCCCcceEEE
Confidence 0233567789999882 2333367889999998854 4332 111222322222222237899999999999995
Q ss_pred e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEE
Q 023672 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVT 269 (279)
Q Consensus 191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~ 269 (279)
+ .|..|+|||+..+ + ....++.. .+|.+....+...| .|-+|++.+.|.++.++|.-+|+++..+.+|...|+
T Consensus 614 ~cQDrnirif~i~sg-K---q~k~FKgs-~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VT 687 (1080)
T KOG1408|consen 614 VCQDRNIRIFDIESG-K---QVKSFKGS-RDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVT 687 (1080)
T ss_pred EecccceEEEecccc-c---eeeeeccc-ccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchhee
Confidence 5 9999999999984 3 33333322 57778888999999 999999999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 023672 270 HVSKLSSAY 278 (279)
Q Consensus 270 ~~~~spdg~ 278 (279)
++.|++|=+
T Consensus 688 G~kF~nDCk 696 (1080)
T KOG1408|consen 688 GVKFLNDCK 696 (1080)
T ss_pred eeeecccch
Confidence 999999854
No 154
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.80 E-value=5.1e-18 Score=122.73 Aligned_cols=196 Identities=16% Similarity=0.251 Sum_probs=141.8
Q ss_pred CCCCCceEEEEEccCCC-----eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 57 SIPNNFLKGIKWSPDGS-----SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 57 ~~h~~~v~~~~~~~~~~-----~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
..|.-+++.+.|.|+.. +|||++ ..+++|.+............. ..........+++++.|+-.
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L--------~~~kns~~~aPlTSFDWne~- 161 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVL--------NNNKNSEFCAPLTSFDWNEV- 161 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhh--------ccCcccccCCcccccccccC-
Confidence 36888999999999763 566554 379999997432111110000 01122345568999999532
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCCe---eeEEEeccCccccccceeeEEECCCCCEEE--EecCCeEEEEEccCCCC
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTGL---LRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGR 206 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~~d~~~~~~ 206 (279)
+.++|.+++.|-+..|||++++. ....+-.|.. .|+.++|...+.-++ +|.||.+|+||+|.-.
T Consensus 162 -----dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK-----EV~DIaf~~~s~~~FASvgaDGSvRmFDLR~le- 230 (364)
T KOG0290|consen 162 -----DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK-----EVYDIAFLKGSRDVFASVGADGSVRMFDLRSLE- 230 (364)
T ss_pred -----CcceeEeecccCeEEEEEEeeccccceeeEEEecCc-----ceeEEEeccCccceEEEecCCCcEEEEEecccc-
Confidence 55699999999999999999873 3555666776 999999999875554 4699999999999721
Q ss_pred ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-cEEEEecCCC-eEEEEEeecCCCEEEEEEccCCC
Q 023672 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYREDNM-ELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~i~~wd~~~~-~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
..++...-.....+...++|++.+.+++++-..|. .|.+-|+|.. .++..+++|.+.|++++|.|...
T Consensus 231 ----HSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~ 300 (364)
T KOG0290|consen 231 ----HSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSS 300 (364)
T ss_pred ----cceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCC
Confidence 12222222333567889999998888999877665 4999999975 57889999999999999999753
No 155
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.79 E-value=4.9e-18 Score=135.84 Aligned_cols=135 Identities=19% Similarity=0.310 Sum_probs=108.3
Q ss_pred ccccCCCCcEEEEecCCC-----cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCC
Q 023672 131 MSASDPTSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRP 204 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~ 204 (279)
+++.+|+++++|+++... .|++|+..+-..+..+..|.- .|+.++|+||+++|+ ++.|+++.+|.....
T Consensus 530 ~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsL-----TVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~ 604 (764)
T KOG1063|consen 530 ALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSL-----TVTRLAFSPDGRYLLSVSRDRTVSLYEVQED 604 (764)
T ss_pred EEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccce-----EEEEEEECCCCcEEEEeecCceEEeeeeecc
Confidence 456699999999997654 489999988888888888876 899999999999999 569999999998653
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC--eEEEE--EeecCCCEEEEEEcc
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYV--LHGQEGGVTHVSKLS 275 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~--~~~~~--~~~~~~~v~~~~~sp 275 (279)
......+.. .+.|+.-|.++.|+| ++.+++|+|.|.+|++|..... +.+.. ...+...|+.++|.|
T Consensus 605 ~~~e~~fa~----~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 605 IKDEFRFAC----LKAHTRIIWDCSWSP-DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred cchhhhhcc----ccccceEEEEcccCc-ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence 222111111 378999999999999 8889999999999999998877 44333 334778899999887
No 156
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.79 E-value=7.1e-18 Score=122.03 Aligned_cols=188 Identities=16% Similarity=0.225 Sum_probs=140.6
Q ss_pred CCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672 58 IPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (279)
Q Consensus 58 ~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (279)
.+..++++..|+. +.+++.++|-|-+..|||++++.. ..+..-...|...|++++|.-.
T Consensus 148 ~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~--------------~~vkTQLIAHDKEV~DIaf~~~------ 207 (364)
T KOG0290|consen 148 EFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS--------------GTVKTQLIAHDKEVYDIAFLKG------ 207 (364)
T ss_pred ccCCcccccccccCCcceeEeecccCeEEEEEEeeccc--------------cceeeEEEecCcceeEEEeccC------
Confidence 4567899999988 778999999999999999997621 1222345678889999999432
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEE-Ee-cCCeEEEEEccCCCCceeeeee
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIF-AG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
.-+.+|+.+.||.|+++|++..+....+..... ...+...++|++.. ++++ .. ....|.+.|+|.+..+.
T Consensus 208 s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~--~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpv----- 280 (364)
T KOG0290|consen 208 SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS--PSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPV----- 280 (364)
T ss_pred ccceEEEecCCCcEEEEEecccccceEEecCCC--CCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcce-----
Confidence 335899999999999999998654443332221 12267789999865 5666 34 66789999999864333
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe------EEEEEeecCCCEEEEEEcc
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME------LLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~------~~~~~~~~~~~v~~~~~sp 275 (279)
..+.+|.+.|+.++|.|.....|++++.|..+.+||+.+.- ++..+. ..+.|..+.|+|
T Consensus 281 --a~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~ 345 (364)
T KOG0290|consen 281 --ARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSS 345 (364)
T ss_pred --ehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecc
Confidence 23379999999999999888999999999999999997532 233333 456789999985
No 157
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=8.5e-19 Score=139.35 Aligned_cols=167 Identities=16% Similarity=0.359 Sum_probs=129.6
Q ss_pred CCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 60 ~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
...|+.+.|+| |..+||+++.||.|++|.+..+.......... .+...|++.|+++.|+|-. .
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe----------~~lt~h~eKI~slRfHPLA------a 690 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPE----------KILTIHGEKITSLRFHPLA------A 690 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcc----------eeeecccceEEEEEecchh------h
Confidence 35699999999 88899999999999999998776543322221 2556788899999998862 3
Q ss_pred cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeecccc
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 217 (279)
..|++++.|-+|++||+.+++....+..|.. .|..++|+|+|+.++ ++.||+|++|+.+....++..-....
T Consensus 691 dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtd-----qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv-- 763 (1012)
T KOG1445|consen 691 DVLAVASYDSTIELWDLANAKLYSRLVGHTD-----QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV-- 763 (1012)
T ss_pred hHhhhhhccceeeeeehhhhhhhheeccCcC-----ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc--
Confidence 4899999999999999999999999999987 999999999999999 67999999999998654443332221
Q ss_pred cCCCCCceEEEEEccCCCcEEEEEeCCC----cEEEEecCC
Q 023672 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQ----TSAIYREDN 254 (279)
Q Consensus 218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg----~i~~wd~~~ 254 (279)
...-..+.|.- +|.++++.+.|. .|.+||..+
T Consensus 764 ----gtRgARi~wac-dgr~viv~Gfdk~SeRQv~~Y~Aq~ 799 (1012)
T KOG1445|consen 764 ----GTRGARILWAC-DGRIVIVVGFDKSSERQVQMYDAQT 799 (1012)
T ss_pred ----cCcceeEEEEe-cCcEEEEecccccchhhhhhhhhhh
Confidence 12334677888 777777666554 477777653
No 158
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=6.8e-18 Score=127.08 Aligned_cols=199 Identities=10% Similarity=0.094 Sum_probs=147.2
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+.+|.+.|+++.|+.++++|++|+.|..+++|.++..-.... .+++.....+|...|.++.|
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~----------~KPI~~~~~~H~SNIF~L~F------- 113 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT----------PKPIGVMEHPHRSNIFSLEF------- 113 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC----------CCCceeccCccccceEEEEE-------
Confidence 6778999999999999999999999999999999874321111 12222234456678888877
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+....++++|..+++|.+.|+++.+.+..+...... ..|+.+..+|..+.+++. .++.|.+||.+....+...+..
T Consensus 114 ~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~---~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~ 190 (609)
T KOG4227|consen 114 DLENRFLYSGERWGTVIKHDIETKQSIYVANENNNR---GDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP 190 (609)
T ss_pred ccCCeeEecCCCcceeEeeecccceeeeeecccCcc---cceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee
Confidence 667789999999999999999999888777654432 279999999998888754 9999999999974334433322
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEE------EeecCCCEEEEEEccCCC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYV------LHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~------~~~~~~~v~~~~~spdg~ 278 (279)
.........+.|+|....+|++.+..+-+-+||.+... ++.. ++.....-.++.|+|+|.
T Consensus 191 -----AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~ 257 (609)
T KOG4227|consen 191 -----ANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGN 257 (609)
T ss_pred -----cCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCC
Confidence 23345678899999778899999999999999998643 2221 222122335677888874
No 159
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.7e-17 Score=126.97 Aligned_cols=206 Identities=12% Similarity=0.162 Sum_probs=153.5
Q ss_pred eeeEecCCCCcccceeeeeeccCCCC-CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPN-NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
-.+.||+.+.+..... .+.|+. ..+.....+|++++|+..+..|.|.|.-..++....
T Consensus 281 y~ysyDle~ak~~k~~----~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~----------------- 339 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLK----PPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELIT----------------- 339 (514)
T ss_pred EEEEeecccccccccc----CCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhh-----------------
Confidence 4678999888765432 233443 457778889999999999999999999888765432
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y 192 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~ 192 (279)
...-.+.|..++| +.+++.|++++.+|.|.+||+++..++..+...+.. .-++++.++++.++|+| .
T Consensus 340 -s~KieG~v~~~~f-------sSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS~ 407 (514)
T KOG2055|consen 340 -SFKIEGVVSDFTF-------SSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGSD 407 (514)
T ss_pred -eeeeccEEeeEEE-------ecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEeccC
Confidence 2333457888877 668889999999999999999999999888876643 22467888999999988 7
Q ss_pred CCeEEEEEccCC--CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC--CCcEEEEecCCCeEEEEEeecC---
Q 023672 193 NKSVRVFDVHRP--GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY--SQTSAIYREDNMELLYVLHGQE--- 265 (279)
Q Consensus 193 d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~--dg~i~~wd~~~~~~~~~~~~~~--- 265 (279)
.|.|.|||..+- +...+.+..+ ..-...|++++|+| ++++|+.+|. +..+++-.+.+......++...
T Consensus 408 ~GiVNIYd~~s~~~s~~PkPik~~----dNLtt~Itsl~Fn~-d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~v 482 (514)
T KOG2055|consen 408 SGIVNIYDGNSCFASTNPKPIKTV----DNLTTAITSLQFNH-DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKV 482 (514)
T ss_pred cceEEEeccchhhccCCCCchhhh----hhhheeeeeeeeCc-chhhhhhhhhccccceEEEeccceeeeccCCCCCCcc
Confidence 899999997641 1111222222 34466899999999 9999998875 5679999988877666666433
Q ss_pred CCEEEEEEccCCC
Q 023672 266 GGVTHVSKLSSAY 278 (279)
Q Consensus 266 ~~v~~~~~spdg~ 278 (279)
+.|+||+|||.|=
T Consensus 483 g~vtc~aFSP~sG 495 (514)
T KOG2055|consen 483 GHVTCMAFSPNSG 495 (514)
T ss_pred cceEEEEecCCCc
Confidence 4799999999663
No 160
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.78 E-value=8.2e-18 Score=137.20 Aligned_cols=175 Identities=14% Similarity=0.239 Sum_probs=133.7
Q ss_pred eEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeee
Q 023672 37 IRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV 116 (279)
Q Consensus 37 ~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (279)
.+|++.++...+.+. ....|.++|++++...-++.+++++.+|.++.||..+..... ..
T Consensus 473 d~fNmQSGi~r~sf~---~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~------------------~l 531 (910)
T KOG1539|consen 473 DRFNMQSGIHRKSFG---DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK------------------SL 531 (910)
T ss_pred EEEEcccCeeecccc---cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee------------------ee
Confidence 345555554433211 346899999999999989999999999999999998754321 11
Q ss_pred cCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCe
Q 023672 117 TEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKS 195 (279)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~ 195 (279)
.-+..+..+.+ +.....++.+..|-.|+++|+.+.+.++.+.+|.. .|++++|||||++|+++ .|++
T Consensus 532 ~l~~~~~~iv~-------hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~n-----ritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 532 RLGSSITGIVY-------HRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGN-----RITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred ccCCCcceeee-------eehhhhhhhhcCceeEEEEEchhhhhhHHhhcccc-----ceeeeEeCCCCcEEEEeecCCc
Confidence 12233444433 34455788889999999999999999999999987 99999999999999955 9999
Q ss_pred EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-CcEEEEecCC
Q 023672 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-QTSAIYREDN 254 (279)
Q Consensus 196 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-g~i~~wd~~~ 254 (279)
|++||+-++ ..+..+ .-..++.++.|+| +|++||+...| .-|++|--.+
T Consensus 600 Ir~wDlpt~-~lID~~--------~vd~~~~sls~SP-ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 600 IRTWDLPTG-TLIDGL--------LVDSPCTSLSFSP-NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred EEEEeccCc-ceeeeE--------ecCCcceeeEECC-CCCEEEEEEecCceEEEEEchh
Confidence 999999984 222222 2356789999999 99999999988 4599997543
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.2e-18 Score=144.83 Aligned_cols=192 Identities=17% Similarity=0.226 Sum_probs=137.6
Q ss_pred CCceEEEEEccCCCe----EEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672 60 NNFLKGIKWSPDGSS----FLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~----l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (279)
...-+.++|.+.+.. ||.|..||.|.+||...-.. .....+......|.+.|..+.|++.
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-----------~~~~~~la~~~~h~G~V~gLDfN~~----- 127 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-----------NASEEVLATKSKHTGPVLGLDFNPF----- 127 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhcc-----------CcchHHHhhhcccCCceeeeecccc-----
Confidence 345788999987765 88999999999999875200 0111111233456679999988654
Q ss_pred CCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeee
Q 023672 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
.++.||+|+.||.|.|||+...+.-.... .......|.+++|+..-..++ ++ .+|.+.|||++.. ++.-.+..
T Consensus 128 -q~nlLASGa~~geI~iWDlnn~~tP~~~~---~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ls~ 202 (1049)
T KOG0307|consen 128 -QGNLLASGADDGEILIWDLNKPETPFTPG---SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIKLSD 202 (1049)
T ss_pred -CCceeeccCCCCcEEEeccCCcCCCCCCC---CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Cccccccc
Confidence 45599999999999999998754433332 111223799999998765555 55 7889999999983 32222211
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCc---EEEEecCCC-eEEEEEeecCCCEEEEEEccCC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT---SAIYREDNM-ELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~---i~~wd~~~~-~~~~~~~~~~~~v~~~~~spdg 277 (279)
. +....+..++|+|++...|+++++|.. |.+||+|.. .++.++.+|..+|.+|.|++.+
T Consensus 203 ~-----~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D 265 (1049)
T KOG0307|consen 203 T-----PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQD 265 (1049)
T ss_pred C-----CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCC
Confidence 1 222458899999988888888877654 999999854 5788899999999999999854
No 162
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.77 E-value=2.2e-18 Score=126.56 Aligned_cols=214 Identities=18% Similarity=0.176 Sum_probs=139.0
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
-+++.|+.++.+.. .+.+|.+.|+.+.|.|+. ++++++|.|.+|++|++++..+.....
T Consensus 116 vIrVid~~~~~~~~------~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG-------------- 175 (385)
T KOG1034|consen 116 VIRVIDVVSGQCSK------NYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG-------------- 175 (385)
T ss_pred EEEEEecchhhhcc------ceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec--------------
Confidence 34555555555544 678999999999999954 788999999999999999765432111
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEecc------Cc-----------------c
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY------DA-----------------V 170 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~------~~-----------------~ 170 (279)
-..+|...|.++.| ++++.+|++|+.|.+|++|++...+....+... .. .
T Consensus 176 G~egHrdeVLSvD~-------~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 176 GVEGHRDEVLSVDF-------SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred ccccccCcEEEEEE-------cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 12457778999987 778999999999999999999854321111100 00 0
Q ss_pred ccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCC------ceeeeeecccccCCCCCceE--EEEEccCCCcEEEEE
Q 023672 171 DEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGR------DFEKYSTLKGNKEGQAGIMS--AIAFSPTHTGMLAIG 241 (279)
Q Consensus 171 ~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~------~~~~~~~~~~~~~~~~~~v~--~~~~sp~~~~~l~~~ 241 (279)
-|...|-|+.|- |.++++ +.++.|..|..-.-+. +.+.-.++...+.-....+. ..+|.| -+.+||.|
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~-~~~~la~g 325 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDP-WQKMLALG 325 (385)
T ss_pred cccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecH-HHHHHhhc
Confidence 011133344443 456664 4778999998722111 11111222222222233333 456677 78899999
Q ss_pred eCCCcEEEEecCCCeEE--EEEeec--CCCEEEEEEccCCC
Q 023672 242 SYSQTSAIYREDNMELL--YVLHGQ--EGGVTHVSKLSSAY 278 (279)
Q Consensus 242 ~~dg~i~~wd~~~~~~~--~~~~~~--~~~v~~~~~spdg~ 278 (279)
...|.|++||++..++. .++..+ ...|+..+||.||.
T Consensus 326 nq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 326 NQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGS 366 (385)
T ss_pred cCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCc
Confidence 99999999999987652 233322 34799999999986
No 163
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.77 E-value=9.6e-18 Score=134.20 Aligned_cols=182 Identities=13% Similarity=0.203 Sum_probs=111.2
Q ss_pred eeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEE-EEeeCcc
Q 023672 53 FRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYD-FCWFPHM 131 (279)
Q Consensus 53 ~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~ 131 (279)
...+.||...|..+++.+.. .++++|+||++++|+-..++..... ....+.+-|.. ++|.+
T Consensus 7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~---------------~~~~~~g~i~~~i~y~e-- 68 (745)
T KOG0301|consen 7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH---------------AFEGPKGFIANSICYAE-- 68 (745)
T ss_pred EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce---------------ecccCcceeeccceecc--
Confidence 34789999999999987654 7999999999999998765442211 11223333333 55522
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~ 210 (279)
.++-.+++|+.|.+|.+|.+.+..+...+..|.. .|++++...++. +++| -|.++++|-...-
T Consensus 69 ----~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~s-----nVC~ls~~~~~~-~iSgSWD~TakvW~~~~l------ 132 (745)
T KOG0301|consen 69 ----SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKS-----NVCSLSIGEDGT-LISGSWDSTAKVWRIGEL------ 132 (745)
T ss_pred ----ccCcceEeecccceEEEEecCCCCchhhhhcccc-----ceeeeecCCcCc-eEecccccceEEecchhh------
Confidence 2445689999999999999999999988888876 666666666655 4443 6777777765421
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
... ..+|...|.+++.-| .. .++|||.|.+|++|.- ++++.+|.+|.+-|+++++-|+
T Consensus 133 ~~~----l~gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~ 190 (745)
T KOG0301|consen 133 VYS----LQGHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDD 190 (745)
T ss_pred hcc----cCCcchheeeeeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecC
Confidence 011 134444444444444 22 4444444444444432 3344444444444444444443
No 164
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.77 E-value=1.6e-16 Score=118.55 Aligned_cols=206 Identities=16% Similarity=0.167 Sum_probs=135.7
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccc-----cccccccc---------C-CCCcccceeeecCCCceEEE
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY-----DVNACSLA---------K-DQDSYEASLVVTEGESVYDF 125 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~-----~~~~~~~~---------~-~~~~~~~~~~~~~~~~v~~~ 125 (279)
..+..+.|+.+...|..|+.||. ++|..+...... ....+..+ . ...+....+....+..|..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~ 84 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEI 84 (391)
T ss_pred cceeeeeeccceeEEEccCCCce-eEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEE
Confidence 34667778888888888888874 677765432100 00000000 0 01111222222223333333
Q ss_pred EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--Ee-cCCeEEEEEcc
Q 023672 126 CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG-YNKSVRVFDVH 202 (279)
Q Consensus 126 ~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~-~d~~i~~~d~~ 202 (279)
.|...-+++-=+.+.|+++-.+. |.|||+++.+.+.++..... +...+.++++++.+.+++ .+ ..|.|.+||..
T Consensus 85 ~fpt~IL~VrmNr~RLvV~Lee~-IyIydI~~MklLhTI~t~~~--n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 85 FFPTSILAVRMNRKRLVVCLEES-IYIYDIKDMKLLHTIETTPP--NPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred ecCCceEEEEEccceEEEEEccc-EEEEecccceeehhhhccCC--CccceEeeccCCCCceEEecCCCCCceEEEEEcc
Confidence 33222222222445666665554 99999999999888765421 112566666677777888 44 78999999998
Q ss_pred CCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc-EEEEecCCCeEEEEEeecC--CCEEEEEEccCCCC
Q 023672 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQE--GGVTHVSKLSSAYT 279 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~~--~~v~~~~~spdg~~ 279 (279)
+- +....+ ..|.+.+.+++|++ +|.+||++++.|+ |||+.+.+|+.++.|+--. ..|.+++|+||++|
T Consensus 162 nl----~~v~~I----~aH~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 162 NL----QPVNTI----NAHKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred cc----eeeeEE----EecCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 72 444455 69999999999999 9999999999998 7999999999999988433 36899999999975
No 165
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.76 E-value=3.1e-17 Score=120.60 Aligned_cols=175 Identities=17% Similarity=0.261 Sum_probs=132.8
Q ss_pred ccCCCCCceEEEEEcc-----CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeC
Q 023672 55 TSSIPNNFLKGIKWSP-----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~-----~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (279)
....|+.+|.+++|++ +.+.+++++. ..+.+|........... ..-....+.+..+.++|.-
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~l------------q~y~D~d~~Esfytcsw~y 99 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLL------------QSYADEDHDESFYTCSWSY 99 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeee------------eeccCCCCCcceEEEEEEe
Confidence 4567889999999985 2346666664 47889988743211000 0002234566788888865
Q ss_pred cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe-cCCeEEEEEccCCCCc
Q 023672 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~ 207 (279)
++.. ...++|.++.-|.|+|.|+.+++....+..|+. .|..+.++|+. ++++++ .|..|++|++++.
T Consensus 100 d~~~---~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~-----sINeik~~p~~~qlvls~SkD~svRlwnI~~~--- 168 (385)
T KOG1034|consen 100 DSNT---GNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGG-----SINEIKFHPDRPQLVLSASKDHSVRLWNIQTD--- 168 (385)
T ss_pred cCCC---CCeeEEeecceeEEEEEecchhhhccceeccCc-----cchhhhcCCCCCcEEEEecCCceEEEEeccCC---
Confidence 4322 245889999999999999999999999999987 99999999986 455555 9999999999984
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~ 256 (279)
.++..+ ....+|.+.|.++.|++ ++.+|++++.|.+|++|++...+
T Consensus 169 -~Cv~Vf-GG~egHrdeVLSvD~~~-~gd~i~ScGmDhslk~W~l~~~~ 214 (385)
T KOG1034|consen 169 -VCVAVF-GGVEGHRDEVLSVDFSL-DGDRIASCGMDHSLKLWRLNVKE 214 (385)
T ss_pred -eEEEEe-cccccccCcEEEEEEcC-CCCeeeccCCcceEEEEecChhH
Confidence 444333 34479999999999999 89999999999999999998543
No 166
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=8.1e-17 Score=121.15 Aligned_cols=143 Identities=20% Similarity=0.320 Sum_probs=114.9
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-------eeeEEEeccCccccccceeeEEECCCC-
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG- 185 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~- 185 (279)
...+|..+|.++.|+|. +.+.||+||.|.+|.||.+..+ +++..+.+|.. .|-.+.|+|.-
T Consensus 76 ~v~GHt~~vLDi~w~Pf------nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~r-----rVg~V~wHPtA~ 144 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPF------NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQR-----RVGLVQWHPTAP 144 (472)
T ss_pred CccCccccccccccCcc------CCceeecCCCCceEEEEECCCcccccCcccceEEEeecce-----eEEEEeecccch
Confidence 45678889999999886 6779999999999999999754 34556666665 88999999985
Q ss_pred CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 186 ~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
+.|+ +|.|..|.+||+.++ +.+.++ .|.+.|.++.|+. +|.+|++++.|..|+|||.++++.+..-.+|
T Consensus 145 NVLlsag~Dn~v~iWnv~tg----eali~l-----~hpd~i~S~sfn~-dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h 214 (472)
T KOG0303|consen 145 NVLLSAGSDNTVSIWNVGTG----EALITL-----DHPDMVYSMSFNR-DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH 214 (472)
T ss_pred hhHhhccCCceEEEEeccCC----ceeeec-----CCCCeEEEEEecc-CCceeeeecccceeEEEcCCCCcEeeecccc
Confidence 4455 569999999999995 223333 3899999999999 9999999999999999999999999888778
Q ss_pred CC-CEEEEEEccCC
Q 023672 265 EG-GVTHVSKLSSA 277 (279)
Q Consensus 265 ~~-~v~~~~~spdg 277 (279)
.+ ....+.|-.+|
T Consensus 215 eG~k~~Raifl~~g 228 (472)
T KOG0303|consen 215 EGAKPARAIFLASG 228 (472)
T ss_pred cCCCcceeEEeccC
Confidence 76 22334454444
No 167
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=2.6e-16 Score=125.76 Aligned_cols=204 Identities=17% Similarity=0.206 Sum_probs=151.7
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+..||+-+.+... ....-.+.|++++.+|.+..++.|+.||.+..++...+...... .
T Consensus 91 ~i~EwDl~~lk~~~------~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r---------------~ 149 (691)
T KOG2048|consen 91 SITEWDLHTLKQKY------NIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR---------------S 149 (691)
T ss_pred eEEEEecccCceeE------EecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe---------------e
Confidence 46678887777665 45566789999999999999999999998888887765443221 2
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEec--cCccc-cccceeeEEECCCCCEEEEe
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRA--YDAVD-EITAAFSVAFNPTGTKIFAG 191 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~l~~~ 191 (279)
.....+.|.++.| +|++..++.|+.||.|++||+.++..+..... .+... ...-|+++.|-.++ .|++|
T Consensus 150 l~rq~sRvLslsw-------~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg 221 (691)
T KOG2048|consen 150 LMRQKSRVLSLSW-------NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG 221 (691)
T ss_pred cccccceEEEEEe-------cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe
Confidence 2334568999988 67888999999999999999999887663222 11111 23367888888665 56666
Q ss_pred -cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE----EEEEeecCC
Q 023672 192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL----LYVLHGQEG 266 (279)
Q Consensus 192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~----~~~~~~~~~ 266 (279)
..|+|.+||...+ ++......|...|.+++-++ ++..+++++.|+.|..|...++.. ......|..
T Consensus 222 DS~G~V~FWd~~~g--------TLiqS~~~h~adVl~Lav~~-~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h 292 (691)
T KOG2048|consen 222 DSAGTVTFWDSIFG--------TLIQSHSCHDADVLALAVAD-NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH 292 (691)
T ss_pred cCCceEEEEcccCc--------chhhhhhhhhcceeEEEEcC-CCCeEEEccCCCceEEEEecCCccceeeeccccCCcc
Confidence 8999999999884 33333368888999999999 889999999999998888766532 233445777
Q ss_pred CEEEEEEccC
Q 023672 267 GVTHVSKLSS 276 (279)
Q Consensus 267 ~v~~~~~spd 276 (279)
.|++++..++
T Consensus 293 dvrs~av~~~ 302 (691)
T KOG2048|consen 293 DVRSMAVIEN 302 (691)
T ss_pred cceeeeeecc
Confidence 7888876654
No 168
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.76 E-value=6.9e-19 Score=143.57 Aligned_cols=196 Identities=14% Similarity=0.200 Sum_probs=153.3
Q ss_pred eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
+..+.+.||..+|.|+.|...|.++++|+.|..++||..++..+.. ...+|.+.+++++.
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lA-----------------s~rGhs~ditdlav--- 240 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLA-----------------SCRGHSGDITDLAV--- 240 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhc-----------------cCCCCccccchhcc---
Confidence 3445788999999999999999999999999999999988765422 22345567777643
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCC----
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGR---- 206 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~---- 206 (279)
+.+..++++++.|..|++|.+.++.++..+..|.. .|++++|+|.. .++.||++++||.+-...
T Consensus 241 ----s~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtg-----avtaiafsP~~---sss~dgt~~~wd~r~~~~~y~p 308 (1113)
T KOG0644|consen 241 ----SSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTG-----AVTAIAFSPRA---SSSDDGTCRIWDARLEPRIYVP 308 (1113)
T ss_pred ----chhhhhhhhcccCceEEEEecCCCchHHHHhcccc-----ceeeeccCccc---cCCCCCceEeccccccccccCC
Confidence 66777899999999999999999999999999987 99999999975 455999999999881000
Q ss_pred -cee-----------------------------------------------------------------e-e----eecc
Q 023672 207 -DFE-----------------------------------------------------------------K-Y----STLK 215 (279)
Q Consensus 207 -~~~-----------------------------------------------------------------~-~----~~~~ 215 (279)
+.+ + + ..+.
T Consensus 309 rp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~ 388 (1113)
T KOG0644|consen 309 RPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL 388 (1113)
T ss_pred CCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhh
Confidence 000 0 0 0011
Q ss_pred cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
....+|...+..+.++|.+..+..+++.||...|||+-.|.++.......+.+..-+||+||+
T Consensus 389 H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgt 451 (1113)
T KOG0644|consen 389 HNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGT 451 (1113)
T ss_pred hhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCc
Confidence 233567888999999998888888999999999999999988765554345677889999986
No 169
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.4e-17 Score=120.30 Aligned_cols=175 Identities=14% Similarity=0.197 Sum_probs=124.1
Q ss_pred CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEE
Q 023672 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152 (279)
Q Consensus 73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (279)
..+|++-..|+|++||..+++...... .+...+..+.|... .....+.+|+.||+|++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-----------------~~~~~~N~vrf~~~-----ds~h~v~s~ssDG~Vr~ 98 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-----------------GPPATTNGVRFISC-----DSPHGVISCSSDGTVRL 98 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-----------------CCCCcccceEEecC-----CCCCeeEEeccCCeEEE
Confidence 578889899999999999876543322 12234445554211 14457899999999999
Q ss_pred EECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-----cCCeEEEEEccCCCCceeeeeecccccCCCCCceEE
Q 023672 153 WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSA 227 (279)
Q Consensus 153 ~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~ 227 (279)
||+++......+...... ..+..+++..-.++.+++| .+..|.+||+|...+++ ..-...|...|++
T Consensus 99 wD~Rs~~e~a~~~~~~~~--~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l------~~~~eSH~DDVT~ 170 (376)
T KOG1188|consen 99 WDIRSQAESARISWTQQS--GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLL------RQLNESHNDDVTQ 170 (376)
T ss_pred EEeecchhhhheeccCCC--CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchh------hhhhhhccCccee
Confidence 999987665555433321 1255677776677788765 36789999999853322 2223689999999
Q ss_pred EEEccCCCcEEEEEeCCCcEEEEecCCCe---EEEEEeecCCCEEEEEEccCC
Q 023672 228 IAFSPTHTGMLAIGSYSQTSAIYREDNME---LLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 228 ~~~sp~~~~~l~~~~~dg~i~~wd~~~~~---~~~~~~~~~~~v~~~~~spdg 277 (279)
++|+|.+..+|++||.||.|.|||+..-. .+...-.|...|..+.|+.++
T Consensus 171 lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 171 LRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred EEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 99999889999999999999999997542 232333466778888888876
No 170
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=6.8e-17 Score=126.56 Aligned_cols=192 Identities=17% Similarity=0.245 Sum_probs=140.4
Q ss_pred eeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeC
Q 023672 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFP 129 (279)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (279)
....-++.+|.++|.|++..+++..+++|+.||+|+.|++....-..+. ...........+|...|+.+.+
T Consensus 334 ~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds-------~dp~vl~~~l~Ghtdavw~l~~-- 404 (577)
T KOG0642|consen 334 VEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDS-------YDPSVLSGTLLGHTDAVWLLAL-- 404 (577)
T ss_pred eeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccc-------cCcchhccceeccccceeeeee--
Confidence 3455588999999999999999999999999999999988732211111 1112233456778888988877
Q ss_pred cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCc----------------------------------------
Q 023672 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA---------------------------------------- 169 (279)
Q Consensus 130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~---------------------------------------- 169 (279)
++....|++|+.||++++|+.....+ .++.....
T Consensus 405 -----s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~ 478 (577)
T KOG0642|consen 405 -----SSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIF 478 (577)
T ss_pred -----cccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeec
Confidence 55666899999999999999865443 11110000
Q ss_pred -------cccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE
Q 023672 170 -------VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241 (279)
Q Consensus 170 -------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~ 241 (279)
......+.-+.++|...+.+++ .|+.|+++|..++ ..+... ..|...++++++.| +|.+|+++
T Consensus 479 ~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~----~~l~s~----~a~~~svtslai~~-ng~~l~s~ 549 (577)
T KOG0642|consen 479 ESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG----KILHSM----VAHKDSVTSLAIDP-NGPYLMSG 549 (577)
T ss_pred cccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc----ccchhe----eeccceecceeecC-CCceEEee
Confidence 0011245677888888888866 9999999999984 222222 57888999999999 99999999
Q ss_pred eCCCcEEEEecCCCeEEEEEeecC
Q 023672 242 SYSQTSAIYREDNMELLYVLHGQE 265 (279)
Q Consensus 242 ~~dg~i~~wd~~~~~~~~~~~~~~ 265 (279)
+.|+.+++|.+....++.....|.
T Consensus 550 s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 550 SHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred cCCceeehhhccchheeecccccc
Confidence 999999999998877766655553
No 171
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.75 E-value=9.6e-17 Score=125.24 Aligned_cols=163 Identities=17% Similarity=0.221 Sum_probs=116.2
Q ss_pred CCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 60 ~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
...|+|+.|-| +...++++-.+|.+.+||..-. .....+ +|. ..+++
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~-----------------------~~~t~p----~~~-----~~k~~ 266 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIV-----------------------CGATAP----SYQ-----ALKDG 266 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeecccc-----------------------ccCCCC----ccc-----ccCCC
Confidence 36799999999 4456777888999999987421 111111 110 01223
Q ss_pred cEEEEecCCCcEEEEE-CCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeeccc
Q 023672 139 CVFASTTRDHPIHLWD-ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
..++.. .|. ..+..++..+..... .|...+|+|||++|| ++.||.+||||+.+. .+..
T Consensus 267 ~~f~i~-------t~ksk~~rNPv~~w~~~~g-----~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~--------eLlg 326 (636)
T KOG2394|consen 267 DQFAIL-------TSKSKKTRNPVARWHIGEG-----SINEFAFSPDGKYLATVSQDGFLRIFDFDTQ--------ELLG 326 (636)
T ss_pred CeeEEe-------eeeccccCCccceeEeccc-----cccceeEcCCCceEEEEecCceEEEeeccHH--------HHHH
Confidence 233221 111 111234444443333 788999999999999 579999999999972 2333
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp 275 (279)
.++..-+...|++||| ||.+|++|++|..|.||.+...+.+..-++|..+|..++|.|
T Consensus 327 ~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred HHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 3344456799999999 999999999999999999999999999999999999999986
No 172
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.74 E-value=5.3e-17 Score=122.41 Aligned_cols=154 Identities=18% Similarity=0.215 Sum_probs=119.7
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee---------eEEEeccCccccccceeeEEECCC
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---------RCTYRAYDAVDEITAAFSVAFNPT 184 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~ 184 (279)
+..+...+++.+.|.+. ..+.+++|+.|..|++|-++.+.. ...+..|. ..|+++.|+|+
T Consensus 8 i~wH~~~pv~s~dfq~n------~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~-----~aVN~vRf~p~ 76 (434)
T KOG1009|consen 8 ISWHDHEPVYSVDFQKN------SLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHT-----RAVNVVRFSPD 76 (434)
T ss_pred EEecCCCceEEEEeccC------cccceecccCccceeeeeeeecCCCCCceeEEEeecccCCc-----ceeEEEEEcCC
Confidence 44456678888887443 222899999999999999875432 22333444 38999999999
Q ss_pred CCEEEEe-cCCeEEEEEccC--------CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672 185 GTKIFAG-YNKSVRVFDVHR--------PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (279)
Q Consensus 185 ~~~l~~~-~d~~i~~~d~~~--------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~ 255 (279)
|.++++| .+|.|.+|-... .....+..........+|...|..++|+| ++.++++++.|+.+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 9999977 889999998762 00111111223333367999999999999 9999999999999999999999
Q ss_pred eEEEEEeecCCCEEEEEEccCCCC
Q 023672 256 ELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 256 ~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
..+..+..|...|..++|.|-++|
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qy 179 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQY 179 (434)
T ss_pred eeEeeccccccccceeecchhhhh
Confidence 999999999999999999998875
No 173
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.9e-17 Score=129.61 Aligned_cols=176 Identities=17% Similarity=0.271 Sum_probs=129.8
Q ss_pred eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
.....+.||++.|+|+.|+.+|.+|++||.|-.+.|||.-.. +....+..+|...|.++.|-|.
T Consensus 41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~----------------KllhsI~TgHtaNIFsvKFvP~ 104 (758)
T KOG1310|consen 41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY----------------KLLHSISTGHTANIFSVKFVPY 104 (758)
T ss_pred chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhc----------------ceeeeeecccccceeEEeeecc
Confidence 334478999999999999999999999999999999998743 2333477788899999999885
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCe----------eeEEEeccCccccccceeeEEECCCCCEEE--EecCCeEEE
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGL----------LRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRV 198 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~ 198 (279)
.+.+++++|+.|..|+++|+...+ ....+..|.. .|..++-.|++...+ ++.||+++-
T Consensus 105 -----tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~-----rVKria~~p~~PhtfwsasEDGtirQ 174 (758)
T KOG1310|consen 105 -----TNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTD-----RVKRIATAPNGPHTFWSASEDGTIRQ 174 (758)
T ss_pred -----CCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhh-----hhhheecCCCCCceEEEecCCcceee
Confidence 366799999999999999998522 2222333333 788889999884443 559999999
Q ss_pred EEccCCCCceeee--eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 199 FDVHRPGRDFEKY--STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 199 ~d~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
+|++.+....... ..........--...++..+|.+..+|+.|+.|-..++||.
T Consensus 175 yDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 175 YDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred ecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 9999742111100 00000001112346789999988899999999999999994
No 174
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=2.1e-16 Score=115.87 Aligned_cols=187 Identities=19% Similarity=0.272 Sum_probs=139.4
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (279)
.+|+|.+|++|.+.+|++.....|.||.......-.. ......|...|+.++| +|..+.
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~--------------~htls~Hd~~vtgvdW-------ap~snr 69 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP--------------AHTLSEHDKIVTGVDW-------APKSNR 69 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCCCCcee--------------ceehhhhCcceeEEee-------cCCCCc
Confidence 5699999999999999999999999999886531100 1133456678999999 566779
Q ss_pred EEEecCCCcEEEEEC-CCCeeeEEE--eccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672 141 FASTTRDHPIHLWDA-TTGLLRCTY--RAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 141 l~s~~~d~~i~i~d~-~~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
|++|+.|..-++|.. ..++-..++ ..... .++++.|+|.++.+++| ....|.||-++.. ... ..-+.
T Consensus 70 Ivtcs~drnayVw~~~~~~~WkptlvLlRiNr-----AAt~V~WsP~enkFAVgSgar~isVcy~E~E-NdW---WVsKh 140 (361)
T KOG1523|consen 70 IVTCSHDRNAYVWTQPSGGTWKPTLVLLRINR-----AATCVKWSPKENKFAVGSGARLISVCYYEQE-NDW---WVSKH 140 (361)
T ss_pred eeEccCCCCccccccCCCCeeccceeEEEecc-----ceeeEeecCcCceEEeccCccEEEEEEEecc-cce---ehhhh
Confidence 999999999999999 444433332 22222 78999999999999977 7788999988762 222 12222
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec-----CC-------------CeEEEEEeecCCCEEEEEEccCCC
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE-----DN-------------MELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~-----~~-------------~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
....+...|.++.|+| ++-+|++|+.|+..+++.. ++ |+++..+....++|.++.|+|+|.
T Consensus 141 ikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~ 219 (361)
T KOG1523|consen 141 IKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGN 219 (361)
T ss_pred hCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCC
Confidence 2256677899999999 9999999999999999963 11 234445545567999999999984
No 175
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=8.8e-16 Score=108.71 Aligned_cols=202 Identities=16% Similarity=0.148 Sum_probs=126.9
Q ss_pred ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccc---ccccccc-CCCCcccceee-------ecCCCceEEEEeeC-
Q 023672 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYD---VNACSLA-KDQDSYEASLV-------VTEGESVYDFCWFP- 129 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~---~~~~~~~-~~~~~~~~~~~-------~~~~~~v~~~~~~~- 129 (279)
.|..-+++|.+++|+.|+.+|.|.++.+.+.-.... .....+. ..++..+..+. ....+.|+...|.-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~ 91 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEE 91 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehhheeeccCceEEEeeehhh
Confidence 366778999999999999999999999875322111 0011110 11122111111 11112333333311
Q ss_pred --------------------------cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672 130 --------------------------HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183 (279)
Q Consensus 130 --------------------------~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (279)
+.+.+.|..+.++.++.|+.++-||+++|+..+++++|.+ .+.++.--.
T Consensus 92 ~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD-----YvH~vv~R~ 166 (325)
T KOG0649|consen 92 EESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD-----YVHSVVGRN 166 (325)
T ss_pred hhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc-----eeeeeeecc
Confidence 1345677777788888999999999999999999999997 888888744
Q ss_pred CCCEEEE-ecCCeEEEEEccCCCCceeeeeecccc--cCCC-CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672 184 TGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGN--KEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259 (279)
Q Consensus 184 ~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~--~~~~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~ 259 (279)
....+++ +.||++|+||+++. +..+.+...+.. ...| ...|.+++- +..+|++|+ ...+.+|++++.++..
T Consensus 167 ~~~qilsG~EDGtvRvWd~kt~-k~v~~ie~yk~~~~lRp~~g~wigala~---~edWlvCGg-Gp~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 167 ANGQILSGAEDGTVRVWDTKTQ-KHVSMIEPYKNPNLLRPDWGKWIGALAV---NEDWLVCGG-GPKLSLWHLRSSESTC 241 (325)
T ss_pred cCcceeecCCCccEEEEecccc-ceeEEeccccChhhcCcccCceeEEEec---cCceEEecC-CCceeEEeccCCCceE
Confidence 3444554 59999999999994 333333222111 0111 234666665 456888876 4569999999998877
Q ss_pred EEeecCCCEEEEEEc
Q 023672 260 VLHGQEGGVTHVSKL 274 (279)
Q Consensus 260 ~~~~~~~~v~~~~~s 274 (279)
.++- ..+|..+.|-
T Consensus 242 vfpi-pa~v~~v~F~ 255 (325)
T KOG0649|consen 242 VFPI-PARVHLVDFV 255 (325)
T ss_pred EEec-ccceeEeeee
Confidence 7663 3345555554
No 176
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=1.4e-15 Score=123.96 Aligned_cols=195 Identities=14% Similarity=0.114 Sum_probs=124.4
Q ss_pred eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCc
Q 023672 33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDS 109 (279)
Q Consensus 33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 109 (279)
.+.+++||....... .+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.++....
T Consensus 183 ~~~i~i~d~dg~~~~-------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~------------- 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF-------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV------------- 242 (429)
T ss_pred eEEEEEECCCCCCce-------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-------------
Confidence 356666776544321 456678889999999999999987654 469999998653210
Q ss_pred ccceeeecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEE--EECCCCeeeEEEeccCccccccceeeEEECCCCC
Q 023672 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHL--WDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT 186 (279)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (279)
+.. ..+..... +|+|||+.|+.++ .+|.+.| ||+.+++.. .+..+.. .+....|+|+|+
T Consensus 243 ----l~~-~~g~~~~~-------~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~-----~~~~~~wSpDG~ 304 (429)
T PRK01742 243 ----VAS-FRGHNGAP-------AFSPDGSRLAFASSKDGVLNIYVMGANGGTPS-QLTSGAG-----NNTEPSWSPDGQ 304 (429)
T ss_pred ----Eec-CCCccCce-------eECCCCCEEEEEEecCCcEEEEEEECCCCCeE-eeccCCC-----CcCCEEECCCCC
Confidence 000 01112233 4488999888764 6776555 566666543 3333332 567899999999
Q ss_pred EEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672 187 KIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 187 ~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
.|+ ++ .++...||++...+..... + .+.. ..+.|+| ++..|+.++.++ +.+||+.+++.......+
T Consensus 305 ~i~f~s~~~g~~~I~~~~~~~~~~~~---l-----~~~~--~~~~~Sp-DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~ 372 (429)
T PRK01742 305 SILFTSDRSGSPQVYRMSASGGGASL---V-----GGRG--YSAQISA-DGKTLVMINGDN-VVKQDLTSGSTEVLSSTF 372 (429)
T ss_pred EEEEEECCCCCceEEEEECCCCCeEE---e-----cCCC--CCccCCC-CCCEEEEEcCCC-EEEEECCCCCeEEecCCC
Confidence 877 55 6788899988653322221 1 1122 3578999 888888777665 666999988754322222
Q ss_pred CCCEEEEEEccCCCC
Q 023672 265 EGGVTHVSKLSSAYT 279 (279)
Q Consensus 265 ~~~v~~~~~spdg~~ 279 (279)
...++.|+|||++
T Consensus 373 --~~~~~~~sPdG~~ 385 (429)
T PRK01742 373 --LDESPSISPNGIM 385 (429)
T ss_pred --CCCCceECCCCCE
Confidence 2356889999973
No 177
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.73 E-value=7.8e-17 Score=128.40 Aligned_cols=179 Identities=20% Similarity=0.270 Sum_probs=127.7
Q ss_pred EccCCCeEEE--eeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec
Q 023672 68 WSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT 145 (279)
Q Consensus 68 ~~~~~~~l~t--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~ 145 (279)
|+.+..++|+ ++..|.|-||+++......+. .. -....+..|+++.|.|- |...|++++
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDg-----------v~--p~l~Ngt~vtDl~WdPF------D~~rLAVa~ 647 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDG-----------VM--PGLFNGTLVTDLHWDPF------DDERLAVAT 647 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCCcc-----------cc--cccccCceeeecccCCC------ChHHeeecc
Confidence 3334455553 455799999999865432221 11 12345678999999775 666899999
Q ss_pred CCCcEEEEECCCC-------eeeEEEeccCccccccceeeEEECCCC-CEEEE-ecCCeEEEEEccCCCCceeeeeeccc
Q 023672 146 RDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 146 ~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
.||.|++|.+..+ .+...+..|.. .|+++.|+|-. ..|++ +.|.+|++||+++. ....
T Consensus 648 ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e-----KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~--------~~~~ 714 (1012)
T KOG1445|consen 648 DDGQINLWRLTANGLPENEMTPEKILTIHGE-----KITSLRFHPLAADVLAVASYDSTIELWDLANA--------KLYS 714 (1012)
T ss_pred cCceEEEEEeccCCCCcccCCcceeeecccc-----eEEEEEecchhhhHhhhhhccceeeeeehhhh--------hhhh
Confidence 9999999999754 34455666665 89999999964 56664 49999999999984 2233
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe-EEEEEeecCC-CEEEEEEccCCCC
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-LLYVLHGQEG-GVTHVSKLSSAYT 279 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-~~~~~~~~~~-~v~~~~~spdg~~ 279 (279)
.+.+|.+.|..++||| +|+.+++.+.||+|++|+.++++ +++.-.+..+ .-..+.|.-||++
T Consensus 715 ~l~gHtdqIf~~AWSp-dGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~ 778 (1012)
T KOG1445|consen 715 RLVGHTDQIFGIAWSP-DGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRI 778 (1012)
T ss_pred eeccCcCceeEEEECC-CCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcE
Confidence 3379999999999999 99999999999999999998875 3333332211 2233556666653
No 178
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=2.2e-16 Score=123.74 Aligned_cols=206 Identities=14% Similarity=0.199 Sum_probs=151.1
Q ss_pred eeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce-eeecCCCceEEEEee
Q 023672 50 YNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS-LVVTEGESVYDFCWF 128 (279)
Q Consensus 50 ~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~ 128 (279)
+....++..|.+.|..++|.|-...|++++.||++++|++... .... ....... ....|.++|.+++.
T Consensus 284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~-~~s~---------~~~~epi~tfraH~gPVl~v~v- 352 (577)
T KOG0642|consen 284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKA-KKSA---------EKDVEPILTFRAHEGPVLCVVV- 352 (577)
T ss_pred cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhccc-CCcc---------ccceeeeEEEecccCceEEEEe-
Confidence 4444478889999999999998889999999999999999431 1100 0111111 33467789999876
Q ss_pred CcccccCCCCcEEEEecCCCcEEEEECCCC----------eeeEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEE
Q 023672 129 PHMSASDPTSCVFASTTRDHPIHLWDATTG----------LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVR 197 (279)
Q Consensus 129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~ 197 (279)
.+++..+++|+.||+|+.|++... .....+.+|.. .|+.+++|+....|++ +.||+++
T Consensus 353 ------~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtd-----avw~l~~s~~~~~Llscs~DgTvr 421 (577)
T KOG0642|consen 353 ------PSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTD-----AVWLLALSSTKDRLLSCSSDGTVR 421 (577)
T ss_pred ------cCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceecccc-----ceeeeeecccccceeeecCCceEE
Confidence 778999999999999999966421 12233445554 8999999998877875 5999999
Q ss_pred EEEccCCCCc--eeee---------------------------------------eecccc---cCCCCCceEEEEEccC
Q 023672 198 VFDVHRPGRD--FEKY---------------------------------------STLKGN---KEGQAGIMSAIAFSPT 233 (279)
Q Consensus 198 ~~d~~~~~~~--~~~~---------------------------------------~~~~~~---~~~~~~~v~~~~~sp~ 233 (279)
+|+.... .+ +... ..+... .......+..+.++|
T Consensus 422 ~w~~~~~-~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~- 499 (577)
T KOG0642|consen 422 LWEPTEE-SPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHP- 499 (577)
T ss_pred eeccCCc-CccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecC-
Confidence 9998652 21 0000 000000 000123467788999
Q ss_pred CCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
+..+.+++.+|+.|+++|..+++++.....|...++++++-|+|-|
T Consensus 500 ~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~ 545 (577)
T KOG0642|consen 500 TADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPY 545 (577)
T ss_pred CCCeeEecccCCceecccccccccchheeeccceecceeecCCCce
Confidence 8899999999999999999999999999999999999999999854
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.7e-15 Score=123.53 Aligned_cols=200 Identities=19% Similarity=0.142 Sum_probs=138.2
Q ss_pred CCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 60 NNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 60 ~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
...|+|+.|+| +..+++.|+.+|.|.+||+..+..... .........|..++..+.|-. ++.+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-----------s~ls~~~~sh~~~v~~vvW~~-----~~~~ 305 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-----------SGLSALEVSHSEPVTAVVWLQ-----NEHN 305 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-----------cccccccccCCcCeEEEEEec-----cCCC
Confidence 46799999999 667888999999999999987654211 122234566788999999954 3344
Q ss_pred cEEEEecCCCcEEEEECCCCee-eEEEecc------CccccccceeeEEECCCC-CEEEEe-cCCeEEEEEccCCCCcee
Q 023672 139 CVFASTTRDHPIHLWDATTGLL-RCTYRAY------DAVDEITAAFSVAFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~-~~~~~~~------~~~~~~~~v~~~~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~~ 209 (279)
.-+++++.||.|..|+++.-.. ...+... ........+++++|.+.. ..+++| ..|.|.--+.........
T Consensus 306 ~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~ 385 (555)
T KOG1587|consen 306 TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE 385 (555)
T ss_pred CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc
Confidence 6688999999999998875332 1111111 111222378899999875 334456 888887744332111121
Q ss_pred eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC-CCeEEEEEeecCCCEEEEEEccC
Q 023672 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED-NMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~-~~~~~~~~~~~~~~v~~~~~spd 276 (279)
...........|.++|+++.++|....++++++ |.+++||... ...++..+..+...|++++|||.
T Consensus 386 ~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt 452 (555)
T KOG1587|consen 386 VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT 452 (555)
T ss_pred ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCc
Confidence 222223334678899999999996666666666 9999999988 77788888888888999999985
No 180
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.71 E-value=4.9e-16 Score=111.15 Aligned_cols=227 Identities=12% Similarity=0.145 Sum_probs=143.6
Q ss_pred eeeeEecCCCCcccceeeeeeccC-CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccc-------ccccC
Q 023672 34 WPLIRFDVPPHRTYHFYNQFRTSS-IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNA-------CSLAK 105 (279)
Q Consensus 34 ~~~~~~d~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~ 105 (279)
--+..|++.+.+... .+. .|+..|+.+.--|+ ..|.+-++|+.+.+|++..+........ |.+..
T Consensus 35 G~V~~w~lqt~r~~~------~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl 107 (323)
T KOG0322|consen 35 GIVKMWVLQTERDLP------LIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRFSL 107 (323)
T ss_pred ceEEEEEeecCccch------hhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeecccccccccee
Confidence 357788888887765 333 46788999999998 4688999999999999987544211110 10000
Q ss_pred --CCCcc----------cceee-----------------ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECC
Q 023672 106 --DQDSY----------EASLV-----------------VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT 156 (279)
Q Consensus 106 --~~~~~----------~~~~~-----------------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~ 156 (279)
..... ..... ...-+.+.+..|.-. ....-+++.|..+|.+.+||+.
T Consensus 108 ~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~----c~s~~lllaGyEsghvv~wd~S 183 (323)
T KOG0322|consen 108 VKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHA----CGSTFLLLAGYESGHVVIWDLS 183 (323)
T ss_pred ccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecccc----ccceEEEEEeccCCeEEEEEcc
Confidence 00000 00000 001122333322110 1112357788899999999999
Q ss_pred CCeeeEEEecc-----CccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE
Q 023672 157 TGLLRCTYRAY-----DAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (279)
Q Consensus 157 ~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (279)
++..+-.++.. ....+..+|.++.|.+.-..=++ |.+..+..|.+.............. -..-.|..+.+
T Consensus 184 ~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~----lknpGv~gvrI 259 (323)
T KOG0322|consen 184 TGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEIT----LKNPGVSGVRI 259 (323)
T ss_pred CCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEE----ecCCCccceEE
Confidence 87433322211 11223348889999865433333 3677888998875322222211221 11234778899
Q ss_pred ccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 231 SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 231 sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
-| ++.++++++.|+.||||+.++.+++..++.|.+.|.+++|+||
T Consensus 260 Rp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd 304 (323)
T KOG0322|consen 260 RP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPD 304 (323)
T ss_pred cc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCC
Confidence 99 9999999999999999999999999999999999999999998
No 181
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=3.3e-16 Score=122.41 Aligned_cols=170 Identities=22% Similarity=0.313 Sum_probs=125.8
Q ss_pred eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
+...+|.++|.|-.|+|||.-|+|++.||.|++|.-... ..........+|++++|.|
T Consensus 98 ~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM------------------LRStl~Q~~~~v~c~~W~p---- 155 (737)
T KOG1524|consen 98 RSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM------------------LRSTVVQNEESIRCARWAP---- 155 (737)
T ss_pred hhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch------------------HHHHHhhcCceeEEEEECC----
Confidence 367899999999999999999999999999999987532 1223455667999999944
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~ 212 (279)
++..++.|.. +.+.+=.+.-...+-..+.|+. -|.++.|++.++++++| .|-..++||-... .+
T Consensus 156 ---~S~~vl~c~g-~h~~IKpL~~n~k~i~WkAHDG-----iiL~~~W~~~s~lI~sgGED~kfKvWD~~G~-----~L- 220 (737)
T KOG1524|consen 156 ---NSNSIVFCQG-GHISIKPLAANSKIIRWRAHDG-----LVLSLSWSTQSNIIASGGEDFRFKIWDAQGA-----NL- 220 (737)
T ss_pred ---CCCceEEecC-CeEEEeecccccceeEEeccCc-----EEEEeecCccccceeecCCceeEEeecccCc-----cc-
Confidence 5555555543 3455555555555556677776 89999999999999976 9999999998741 11
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe-ecCCCEEEEEEccCCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH-GQEGGVTHVSKLSSAY 278 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~spdg~ 278 (279)
.....|..+|++++|+| + ..++.++. ++++ +. ...+.|..++|||||.
T Consensus 221 ---f~S~~~ey~ITSva~np-d-~~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGT 269 (737)
T KOG1524|consen 221 ---FTSAAEEYAITSVAFNP-E-KDYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGT 269 (737)
T ss_pred ---ccCChhccceeeeeecc-c-cceeeeee-eeee------------ecCCCccceEEEEEcCCCc
Confidence 12268889999999999 6 55666653 2344 22 2456789999999984
No 182
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.71 E-value=1.1e-15 Score=123.44 Aligned_cols=192 Identities=15% Similarity=0.239 Sum_probs=141.3
Q ss_pred hcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCcccccccccccc
Q 023672 27 ENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLA 104 (279)
Q Consensus 27 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 104 (279)
++...+..-+-+||+...-. ...++.+|...|+++.|.-.| ..+++++.|..|.. +....... ..
T Consensus 519 LASasrdRlIHV~Dv~rny~-----l~qtld~HSssITsvKFa~~gln~~MiscGADksimF-r~~qk~~~----g~--- 585 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRNYD-----LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMF-RVNQKASS----GR--- 585 (1080)
T ss_pred hhhccCCceEEEEecccccc-----hhhhhcccccceeEEEEeecCCceEEEeccCchhhhe-ehhccccC----ce---
Confidence 34445555566777654332 234899999999999998866 67889999987654 33321000 00
Q ss_pred CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC
Q 023672 105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT 184 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 184 (279)
.+......-....++++. +.|+..++++++.|..|+|||+.+++..+.|+...... +....+...|.
T Consensus 586 ----~f~r~t~t~~ktTlYDm~-------Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e--G~lIKv~lDPS 652 (1080)
T KOG1408|consen 586 ----LFPRHTQTLSKTTLYDMA-------VDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE--GDLIKVILDPS 652 (1080)
T ss_pred ----eccccccccccceEEEee-------eCCCcceEEEEecccceEEEeccccceeeeecccccCC--CceEEEEECCC
Confidence 000111122234566664 47889999999999999999999999999998755422 24557899999
Q ss_pred CCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 185 GTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 185 ~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
|.+++++ .|.++.++|+-++ +++... .+|...|+.+.|.+ +-..|++.+.||.|.||.+.
T Consensus 653 giY~atScsdktl~~~Df~sg----EcvA~m----~GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW~lp 713 (1080)
T KOG1408|consen 653 GIYLATSCSDKTLCFVDFVSG----ECVAQM----TGHSEAVTGVKFLN-DCKHLISVSGDGCIFVWKLP 713 (1080)
T ss_pred ccEEEEeecCCceEEEEeccc----hhhhhh----cCcchheeeeeecc-cchhheeecCCceEEEEECc
Confidence 9999976 9999999999985 444444 79999999999999 88899999999999999875
No 183
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.71 E-value=1.5e-16 Score=124.36 Aligned_cols=129 Identities=15% Similarity=0.249 Sum_probs=105.0
Q ss_pred ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~ 212 (279)
.++|+|.-|++++.||.|++|. ++|-...++.-... +|+|++|.|+++.++-+..+.+.+=.+....+. .
T Consensus 111 RW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~-----~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~----i 180 (737)
T KOG1524|consen 111 RWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEE-----SIRCARWAPNSNSIVFCQGGHISIKPLAANSKI----I 180 (737)
T ss_pred ccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCc-----eeEEEEECCCCCceEEecCCeEEEeecccccce----e
Confidence 3588999999999999999999 56655555444444 899999999988887666677777666653221 1
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
.. .+|.+-|.++.|+| ..+++++|++|-..++||. -|..++.-..|+.+|++++|.||-
T Consensus 181 ~W----kAHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd~ 239 (737)
T KOG1524|consen 181 RW----RAHDGLVLSLSWST-QSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNPEK 239 (737)
T ss_pred EE----eccCcEEEEeecCc-cccceeecCCceeEEeecc-cCcccccCChhccceeeeeecccc
Confidence 22 68999999999999 8899999999999999994 677788888899999999999984
No 184
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.71 E-value=3.1e-15 Score=116.16 Aligned_cols=158 Identities=17% Similarity=0.257 Sum_probs=126.1
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
+..+|.+....++.+|+...++|++.|+.+++|+ . .+.. ....-..++.++.|
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-~-~k~~------------------wt~~~~d~~~~~~f------- 415 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-D-HKLE------------------WTKIIEDPAECADF------- 415 (626)
T ss_pred EEEecccceeeEEcCCChhheeeccCcceEEEcc-C-Ccee------------------EEEEecCceeEeec-------
Confidence 5678999999999999999999999999999999 2 1110 11112245555554
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+|.| .+|.|...|...+.|.++...+..-.. .. ++.++.|+|+|.+|+.| .|+.|++|.+..+++.+.....
T Consensus 416 hpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~-----~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 416 HPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NE-----QLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred cCcc-eEEEeeccceEEEEecccceeEEEEec-CC-----ceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeee
Confidence 7778 999999999999999998655544333 43 89999999999999977 9999999999987776665544
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
. .+ .+|+.+.||+ ++++|.+-+.|-.|..|...
T Consensus 489 ~----~g--s~ithLDwS~-Ds~~~~~~S~d~eiLyW~~~ 521 (626)
T KOG2106|consen 489 C----SG--SPITHLDWSS-DSQFLVSNSGDYEILYWKPS 521 (626)
T ss_pred e----cC--ceeEEeeecC-CCceEEeccCceEEEEEccc
Confidence 4 23 7899999999 99999999999999999543
No 185
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.1e-15 Score=112.33 Aligned_cols=182 Identities=13% Similarity=0.195 Sum_probs=123.8
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcc--ccccccccccCCCCcccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGI--SYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 112 (279)
.+.+|++. ++.+. .+......-...+.||+|+++++++-...|++|.+--++- .++....
T Consensus 210 ~i~lw~lk-Gq~L~------~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rv----------- 271 (420)
T KOG2096|consen 210 KICLWDLK-GQLLQ------SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV----------- 271 (420)
T ss_pred cEEEEecC-Cceee------eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhh-----------
Confidence 56778887 55544 2222233345678999999999999989999999742111 0000000
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-------eeeEEEeccCccccccceeeEEECCCC
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-------LLRCTYRAYDAVDEITAAFSVAFNPTG 185 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~~~~ 185 (279)
.-..+|...|..++| +++...+++.+.||++++||.+-. +.++....+...... ....++++|+|
T Consensus 272 f~LkGH~saV~~~aF-------sn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~-~p~RL~lsP~g 343 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAF-------SNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGS-EPVRLELSPSG 343 (420)
T ss_pred heeccchhheeeeee-------CCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCC-CceEEEeCCCC
Confidence 012346667877766 778899999999999999998631 222222211111111 33489999999
Q ss_pred CEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 186 ~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
+.|+.+....+++|..+++ +...+ +. ..|...|.++.|++ +|.++++++ |..+++..
T Consensus 344 ~~lA~s~gs~l~~~~se~g-~~~~~---~e---~~h~~~Is~is~~~-~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 344 DSLAVSFGSDLKVFASEDG-KDYPE---LE---DIHSTTISSISYSS-DGKYIATCG-DRYVRVIR 400 (420)
T ss_pred cEEEeecCCceEEEEcccC-ccchh---HH---HhhcCceeeEEecC-CCcEEeeec-ceeeeeec
Confidence 9999998889999999984 33322 22 57888999999999 999999987 66777775
No 186
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.70 E-value=2.1e-15 Score=121.09 Aligned_cols=214 Identities=13% Similarity=0.219 Sum_probs=149.1
Q ss_pred eeeeeeccCCCCCceEEEEEccCC---CeEEEeeCCCeEEEEeCCCCcccc-cc--ccccccCCCC------ccc-----
Q 023672 49 FYNQFRTSSIPNNFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPENGISY-DV--NACSLAKDQD------SYE----- 111 (279)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~dg~i~iwd~~~~~~~~-~~--~~~~~~~~~~------~~~----- 111 (279)
.+.....+.||.+.|.+++|...+ -+||++|.|..|+||.+.-+.... .. .......... ...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 344556899999999999998744 378899999999999986443111 00 0000000000 000
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
..+..+|...|+++.| +|.+..|++++.|.++.+|...+. --+...+.....+.....+...|+|+++.++
T Consensus 260 eall~GHeDWV~sv~W-------~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWW-------HPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred hhhhcCcccceEEEEE-------ccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEE
Confidence 1233478889999999 556778999999999999988654 3344444433333334688999999998888
Q ss_pred E-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC----CCeEEEEEeec
Q 023672 190 A-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED----NMELLYVLHGQ 264 (279)
Q Consensus 190 ~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~----~~~~~~~~~~~ 264 (279)
+ |..|..++|-... . ..........||...|..++|+| .|.+|++.+.|.+-||+-.- +...+..-+-|
T Consensus 333 ~~g~~Gg~hlWkt~d-~----~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiH 406 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKD-K----TFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIH 406 (764)
T ss_pred EecccCcEEEEeccC-c----cceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeecccccc
Confidence 5 5999999998433 1 11233333489999999999999 99999999999999998653 22344555567
Q ss_pred CCCEEEEEEcc
Q 023672 265 EGGVTHVSKLS 275 (279)
Q Consensus 265 ~~~v~~~~~sp 275 (279)
...+++++|-+
T Consensus 407 GyDl~c~~~vn 417 (764)
T KOG1063|consen 407 GYDLTCLSFVN 417 (764)
T ss_pred cccceeeehcc
Confidence 77788888876
No 187
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.69 E-value=2.3e-14 Score=103.47 Aligned_cols=156 Identities=22% Similarity=0.415 Sum_probs=105.8
Q ss_pred EEEEEccCCCeEEEeeC----------CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 64 KGIKWSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 64 ~~~~~~~~~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
..+.|+|+|++|++-.. -|...||.++... .....+.....++|.+++|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~---------------~~~~~i~l~~~~~I~~~~W------ 67 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN---------------IPVESIELKKEGPIHDVAW------ 67 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC---------------CccceeeccCCCceEEEEE------
Confidence 35789999987764322 2345566554321 2222344555567999999
Q ss_pred cCCCCcEEEEe--cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Eec---CCeEEEEEccCCCCc
Q 023672 134 SDPTSCVFAST--TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---NKSVRVFDVHRPGRD 207 (279)
Q Consensus 134 ~~~~~~~l~s~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---d~~i~~~d~~~~~~~ 207 (279)
+|++..|++. ..+..|.+||++ ++.+..+. .. .+..+.|+|+|++++ +|. .|.|.+||.++.
T Consensus 68 -sP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~-----~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--- 135 (194)
T PF08662_consen 68 -SPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQ-----PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--- 135 (194)
T ss_pred -CcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CC-----CceEEEECCCCCEEEEEEccCCCcEEEEEECCCC---
Confidence 6677776544 457799999996 55555554 22 567899999999998 442 478999999863
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC------CCcEEEEecCCCeEEEEE
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVL 261 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~ 261 (279)
+.+... .| ..++.++|+| +|++|+++.. |+.++||+. +|+++...
T Consensus 136 -~~i~~~-----~~-~~~t~~~WsP-dGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 136 -KKISTF-----EH-SDATDVEWSP-DGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred -EEeecc-----cc-CcEEEEEEcC-CCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 333232 22 3478999999 8898888764 778999997 56666544
No 188
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.1e-15 Score=111.63 Aligned_cols=186 Identities=15% Similarity=0.233 Sum_probs=130.1
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
.+.+||..+++.+. .+.+|...++.++|.. ....+.+|+.||+|++||++........
T Consensus 51 sv~lyd~~tg~~l~------~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~-------------- 110 (376)
T KOG1188|consen 51 SVRLYDKGTGQLLE------EFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARI-------------- 110 (376)
T ss_pred eEEEEeccchhhhh------eecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhe--------------
Confidence 56778888877766 7888889999999976 4567889999999999999865332111
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecC----CCcEEEEECCCCee-eEEEe-ccCccccccceeeEEECCCC-
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR----DHPIHLWDATTGLL-RCTYR-AYDAVDEITAAFSVAFNPTG- 185 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~i~d~~~~~~-~~~~~-~~~~~~~~~~v~~~~~~~~~- 185 (279)
......+.+..++ +.+.+++.+++|.. +-.|.+||++..+. +..+. .|.. .|+++.|+|..
T Consensus 111 ~~~~~~~~~f~~l-------d~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~D-----DVT~lrFHP~~p 178 (376)
T KOG1188|consen 111 SWTQQSGTPFICL-------DLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHND-----DVTQLRFHPSDP 178 (376)
T ss_pred eccCCCCCcceEe-------eccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccC-----cceeEEecCCCC
Confidence 0111112344433 33446677777743 56799999998765 44433 3443 89999999986
Q ss_pred CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC-cEEEEEeCCCcEEEEecCCCeEE
Q 023672 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT-GMLAIGSYSQTSAIYREDNMELL 258 (279)
Q Consensus 186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~-~~l~~~~~dg~i~~wd~~~~~~~ 258 (279)
++|++| .||-|.|||++.....-....++ .|...|.++.|.. ++ ..|.+-+...+..+|++..+.+.
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-----N~~sSI~~igw~~-~~ykrI~clTH~Etf~~~ele~~~~~ 247 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVI-----NHGSSIHLIGWLS-KKYKRIMCLTHMETFAIYELEDGSEE 247 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhh-----cccceeeeeeeec-CCcceEEEEEccCceeEEEccCCChh
Confidence 566677 99999999998753322222333 5667799999988 55 45777788899999999877543
No 189
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.67 E-value=9.3e-14 Score=113.26 Aligned_cols=196 Identities=26% Similarity=0.426 Sum_probs=145.6
Q ss_pred eeeEecCCC-CcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 35 PLIRFDVPP-HRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 35 ~~~~~d~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
.+.+|+... ... ...+.+|...|.+++|+|++..+++++. |+.+++|++..+....
T Consensus 135 ~~~~~~~~~~~~~------~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 192 (466)
T COG2319 135 TVKLWDLSTPGKL------IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS---------------- 192 (466)
T ss_pred cEEEEEecCCCeE------EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE----------------
Confidence 455566655 222 2267789999999999999998888885 9999999998632211
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCc-EEEEecCCCcEEEEECCCCeeeE-EEeccCccccccceeeEEECCCCCEEEE
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (279)
....+...+..+.| +|++. .+++++.|+.|++||...+.... .+..+.. .. ...|+|++.++++
T Consensus 193 -~~~~~~~~v~~~~~-------~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~ 258 (466)
T COG2319 193 -TLAGHTDPVSSLAF-------SPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD-----SV-VSSFSPDGSLLAS 258 (466)
T ss_pred -eeccCCCceEEEEE-------cCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc-----ce-eEeECCCCCEEEE
Confidence 22226678888888 45666 55556999999999988777766 4555553 32 2289999977775
Q ss_pred e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe--ecCCC
Q 023672 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH--GQEGG 267 (279)
Q Consensus 191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~--~~~~~ 267 (279)
+ .|+.+++|+++.... ..... .+|...+.++.|+| ++..+++++.|+.+.+||..+........ .|...
T Consensus 259 ~~~d~~~~~~~~~~~~~---~~~~~----~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (466)
T COG2319 259 GSSDGTIRLWDLRSSSS---LLRTL----SGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP 330 (466)
T ss_pred ecCCCcEEEeeecCCCc---EEEEE----ecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc
Confidence 5 999999999997432 11122 46788999999999 77788889889889999998887766665 77777
Q ss_pred EEEEEEc
Q 023672 268 VTHVSKL 274 (279)
Q Consensus 268 v~~~~~s 274 (279)
+..+.|.
T Consensus 331 ~~~~~~~ 337 (466)
T COG2319 331 VSSLSFS 337 (466)
T ss_pred eEEEEEC
Confidence 8888883
No 190
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=5.9e-15 Score=121.40 Aligned_cols=230 Identities=13% Similarity=0.109 Sum_probs=150.6
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC---CeEEEeeCCCeEEEEeCCCCccccccccc----------
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPENGISYDVNAC---------- 101 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~~~dg~i~iwd~~~~~~~~~~~~~---------- 101 (279)
.+.+|...++.+.+ .+.+|...++.+.+.|.. .++.+++.||+|++||...+.+.......
T Consensus 38 ~V~VyS~~Tg~~i~------~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~ 111 (792)
T KOG1963|consen 38 FVKVYSTATGECIT------SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKP 111 (792)
T ss_pred EEEEEecchHhhhh------hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEech
Confidence 56778888888876 788999999999998844 36779999999999999887653221100
Q ss_pred cccCCC-----Cccc-ceee---ecCCCceEEE---------------EeeCcccccCCCCcEEEEecCCCcEEEEECCC
Q 023672 102 SLAKDQ-----DSYE-ASLV---VTEGESVYDF---------------CWFPHMSASDPTSCVFASTTRDHPIHLWDATT 157 (279)
Q Consensus 102 ~~~~~~-----~~~~-~~~~---~~~~~~v~~~---------------~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~ 157 (279)
..+... .... ..+. ..-...+... .-.|.++..++.+.+.+..- +..+.+|+..+
T Consensus 112 ~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~-~~~~~~~~v~~ 190 (792)
T KOG1963|consen 112 AQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVH-MCKIHIYFVPK 190 (792)
T ss_pred hHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEE-eeeEEEEEecc
Confidence 000000 0000 0000 0000000000 00134555566665554443 55688888887
Q ss_pred CeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCc
Q 023672 158 GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTG 236 (279)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~ 236 (279)
+. ...........+.-.+++.++||++++++++ .||.|.+|.--...........+ .=|...|.+++|++ +|.
T Consensus 191 ~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~l----HWH~~~V~~L~fS~-~G~ 264 (792)
T KOG1963|consen 191 HT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLL----HWHHDEVNSLSFSS-DGA 264 (792)
T ss_pred cc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEE----EecccccceeEEec-CCc
Confidence 55 2222222222333357899999999999998 99999999654311111112223 56788999999999 999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 237 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+|++|+..|.+-+|.+.+++ .+-|+--.++|..+.+||||-
T Consensus 265 ~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~ 305 (792)
T KOG1963|consen 265 YLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSD 305 (792)
T ss_pred eEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCC
Confidence 99999999999999999998 556666788999999999985
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.67 E-value=2.8e-14 Score=112.77 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=118.5
Q ss_pred CceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 61 NFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
+....++|+|++++|++++. ++.|.+|++++....... . ...... ..|..++++|+++
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~------------~--~~~~~~-------~~~~~~~~~p~g~ 138 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAP------------I--QIIEGL-------EGCHSANIDPDNR 138 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCc------------e--eeccCC-------CcccEeEeCCCCC
Confidence 34678999999999887765 889999999743211000 0 000011 1234456688998
Q ss_pred EEEEe-cCCCcEEEEECCCCeeeEE-----EeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeee
Q 023672 140 VFAST-TRDHPIHLWDATTGLLRCT-----YRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 140 ~l~s~-~~d~~i~i~d~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~ 211 (279)
+++++ ..++.|.+||+.+...+.. ...... ..+..+.|+|+++++++. .++.|.+||+......++..
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g----~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~ 214 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG----AGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECV 214 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC----CCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEE
Confidence 88554 5568999999976332211 111111 146789999999999854 58999999998532223333
Q ss_pred eeccccc--CCCCCceEEEEEccCCCcEEEEEe-CCCcEEEEecCCCe----EEEEEeecCCCEEEEEEccCCCC
Q 023672 212 STLKGNK--EGQAGIMSAIAFSPTHTGMLAIGS-YSQTSAIYREDNME----LLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 212 ~~~~~~~--~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~~wd~~~~~----~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
..+.... ..+......+.++| ++.+|+++. .++.|.+|++.... .+..+.. ....+.++|+|||++
T Consensus 215 ~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~ 287 (330)
T PRK11028 215 QTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKY 287 (330)
T ss_pred EEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCE
Confidence 2221100 01122345689999 888887775 47889999986433 2222222 124568999999975
No 192
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=8.1e-15 Score=109.48 Aligned_cols=185 Identities=17% Similarity=0.226 Sum_probs=127.1
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (279)
-.+..++|++.-..+|++..|-.|++||-.... ...+.......|.+++|.|.+ +..
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~-----------------pt~Lks~sQrnvtclawRPls------ase 155 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTC-----------------PTKLKSVSQRNVTCLAWRPLS------ASE 155 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCC-----------------CceecchhhcceeEEEeccCC------cce
Confidence 457889999977778999999999999976411 112334445689999998762 336
Q ss_pred EEEecCCCcEEEEECCCC-eeeEE---Ee-----ccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCcee
Q 023672 141 FASTTRDHPIHLWDATTG-LLRCT---YR-----AYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 141 l~s~~~d~~i~i~d~~~~-~~~~~---~~-----~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~ 209 (279)
|+.|+..| |.+|..... ..-.. +. .-...++ .+|++|.|.+||..++ ++ .|..|.|||..++. ..
T Consensus 156 lavgCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~-~~- 231 (445)
T KOG2139|consen 156 LAVGCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQ-KI- 231 (445)
T ss_pred eeeeecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCC-cc-
Confidence 77777665 888977531 11110 01 0111222 3899999999999888 55 89999999999841 11
Q ss_pred eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
.+. ....+.+.-+.||| ++.+|++++-|+..++|+....-......-..+.|....|+|+|++
T Consensus 232 ---pL~---~~glgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 232 ---PLI---PKGLGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred ---ccc---ccCCCceeeEEEcC-CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 111 12235688899999 8999999999999999965433222233334558999999999975
No 193
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=3.4e-14 Score=116.02 Aligned_cols=197 Identities=15% Similarity=0.092 Sum_probs=122.2
Q ss_pred eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCc
Q 023672 33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDS 109 (279)
Q Consensus 33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~ 109 (279)
.+.+.++|....... .+..|...+.+.+|+|||+.|+.++.+ ..|.+||+.++....
T Consensus 183 ~~~l~i~D~~g~~~~-------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~------------- 242 (433)
T PRK04922 183 RYALQVADSDGYNPQ-------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL------------- 242 (433)
T ss_pred eEEEEEECCCCCCce-------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-------------
Confidence 445677776544332 344567789999999999999877643 469999997653211
Q ss_pred ccceeeecCCCceEEEEeeCcccccCCCCcEEE-EecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC
Q 023672 110 YEASLVVTEGESVYDFCWFPHMSASDPTSCVFA-STTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT 186 (279)
Q Consensus 110 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~-s~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 186 (279)
+. ...+..... .|+|+|+.|+ +.+.++ .|.+||+.+++... +..+.. .....+|+|+|+
T Consensus 243 ----l~-~~~g~~~~~-------~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~~-----~~~~~~~spDG~ 304 (433)
T PRK04922 243 ----VA-SFRGINGAP-------SFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHFG-----IDTEPTWAPDGK 304 (433)
T ss_pred ----ec-cCCCCccCc-------eECCCCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCCC-----CccceEECCCCC
Confidence 10 011112223 4588998775 445555 59999998886543 322221 335789999999
Q ss_pred EEE-Ee-cCCe--EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCCeEEE
Q 023672 187 KIF-AG-YNKS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLY 259 (279)
Q Consensus 187 ~l~-~~-~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~~~~~ 259 (279)
.++ ++ .++. |+++|+.++ . ...+ +. . ......++|+| ++..|+..+.++ .|.+||+.+++..
T Consensus 305 ~l~f~sd~~g~~~iy~~dl~~g-~-~~~l-t~----~--g~~~~~~~~Sp-DG~~Ia~~~~~~~~~~I~v~d~~~g~~~- 373 (433)
T PRK04922 305 SIYFTSDRGGRPQIYRVAASGG-S-AERL-TF----Q--GNYNARASVSP-DGKKIAMVHGSGGQYRIAVMDLSTGSVR- 373 (433)
T ss_pred EEEEEECCCCCceEEEEECCCC-C-eEEe-ec----C--CCCccCEEECC-CCCEEEEEECCCCceeEEEEECCCCCeE-
Confidence 887 44 4454 666666542 1 1211 11 1 12344689999 777777654333 5999999888754
Q ss_pred EEeecCCCEEEEEEccCCCC
Q 023672 260 VLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 260 ~~~~~~~~v~~~~~spdg~~ 279 (279)
.+. +........|+|||++
T Consensus 374 ~Lt-~~~~~~~p~~spdG~~ 392 (433)
T PRK04922 374 TLT-PGSLDESPSFAPNGSM 392 (433)
T ss_pred ECC-CCCCCCCceECCCCCE
Confidence 333 2234567899999974
No 194
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.6e-13 Score=108.53 Aligned_cols=188 Identities=9% Similarity=0.104 Sum_probs=116.6
Q ss_pred CceEEEEEccCCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 61 NFLKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
+....++++|++++|++++ .++.|.+|++......... ....... .|..++++|+++
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~---------------~~~~~~~-------~p~~i~~~~~g~ 92 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA---------------AESPLPG-------SPTHISTDHQGR 92 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe---------------eeecCCC-------CceEEEECCCCC
Confidence 4577899999999887664 4788999998632110000 0000111 233356689999
Q ss_pred EEEEecC-CCcEEEEECCC-Cee---eEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeee
Q 023672 140 VFASTTR-DHPIHLWDATT-GLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 140 ~l~s~~~-d~~i~i~d~~~-~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~ 212 (279)
++++++. ++.|.+|++.+ +.. +..+... ..+.+++++|++++++ +. .++.|.+||+.+.+. +....
T Consensus 93 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~------~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~-l~~~~ 165 (330)
T PRK11028 93 FLFSASYNANCVSVSPLDKDGIPVAPIQIIEGL------EGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGH-LVAQE 165 (330)
T ss_pred EEEEEEcCCCeEEEEEECCCCCCCCceeeccCC------CcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCc-ccccC
Confidence 8887764 88999999974 322 2222111 1456789999999887 45 789999999986322 11100
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeC-CCcEEEEecCC--C--eEEEEEeecC------CCEEEEEEccCCCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDN--M--ELLYVLHGQE------GGVTHVSKLSSAYT 279 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~i~~wd~~~--~--~~~~~~~~~~------~~v~~~~~spdg~~ 279 (279)
..... .........++|+| ++.+++++.. ++.|.+||+.. + +.+..+..+. .....+.|+|||++
T Consensus 166 ~~~~~-~~~g~~p~~~~~~p-dg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~ 241 (330)
T PRK11028 166 PAEVT-TVEGAGPRHMVFHP-NQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRH 241 (330)
T ss_pred CCcee-cCCCCCCceEEECC-CCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCE
Confidence 00000 01123466899999 8888877766 89999999973 3 3344443221 13346899999975
No 195
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=5.5e-14 Score=114.93 Aligned_cols=182 Identities=13% Similarity=0.102 Sum_probs=116.0
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeC---CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
.+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.... + ....+.+....
T Consensus 196 ~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-----------------l-~~~~g~~~~~~----- 252 (435)
T PRK05137 196 YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-----------------V-GNFPGMTFAPR----- 252 (435)
T ss_pred EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-----------------e-ecCCCcccCcE-----
Confidence 35567788999999999999887653 4689999998653310 1 11122333444
Q ss_pred cccCCCCcEEE-EecCCCc--EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCC
Q 023672 132 SASDPTSCVFA-STTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRP 204 (279)
Q Consensus 132 ~~~~~~~~~l~-s~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~ 204 (279)
|+|+|+.|+ +.+.++. |.+||+.++.... +..+.. ......|+|+|+.++ ++ .++ .|+++|+..+
T Consensus 253 --~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-Lt~~~~-----~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 253 --FSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR-LTDSPA-----IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred --ECCCCCEEEEEEecCCCceEEEEECCCCceEE-ccCCCC-----ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCC
Confidence 488998765 4555554 7788998876543 332222 345789999999887 44 333 6778887652
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
....+ ..+...+....|+| ++..|+..+.+ ..|.+||+.++.. ..+. ....+..+.|+|||++
T Consensus 325 --~~~~l-------t~~~~~~~~~~~Sp-dG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt-~~~~~~~p~~spDG~~ 390 (435)
T PRK05137 325 --NPRRI-------SFGGGRYSTPVWSP-RGDLIAFTKQGGGQFSIGVMKPDGSGE-RILT-SGFLVEGPTWAPNGRV 390 (435)
T ss_pred --CeEEe-------ecCCCcccCeEECC-CCCEEEEEEcCCCceEEEEEECCCCce-Eecc-CCCCCCCCeECCCCCE
Confidence 12221 11233456688999 77777765543 3588889765543 3333 2235678899999973
No 196
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=8.2e-14 Score=113.38 Aligned_cols=181 Identities=13% Similarity=0.092 Sum_probs=112.0
Q ss_pred cCCCCCceEEEEEccCCCeEEEeeC---CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 56 SSIPNNFLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++... +. ...+.+....
T Consensus 194 lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-----------------l~-~~~~~~~~~~------ 249 (429)
T PRK03629 194 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-----------------VA-SFPRHNGAPA------ 249 (429)
T ss_pred eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-----------------cc-CCCCCcCCeE------
Confidence 3345678999999999999886542 4578999987653211 00 0111122334
Q ss_pred ccCCCCcEEEEe-cCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEE--EccCCC
Q 023672 133 ASDPTSCVFAST-TRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVF--DVHRPG 205 (279)
Q Consensus 133 ~~~~~~~~l~s~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~--d~~~~~ 205 (279)
|+|||+.|+.. +.++ .|.+||+.+++....... .. .+....|+|+|+.|+ ++ .++...+| |+..+
T Consensus 250 -~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~-~~-----~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g- 321 (429)
T PRK03629 250 -FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG-RS-----NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG- 321 (429)
T ss_pred -ECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC-CC-----CcCceEECCCCCEEEEEeCCCCCceEEEEECCCC-
Confidence 48899888765 4444 588999988875443322 22 456899999999887 44 44544555 55442
Q ss_pred CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
....+ ...........|+| +|..|+..+.+ ..|.+||+.+++.. .+... .......|+|||++
T Consensus 322 -~~~~l-------t~~~~~~~~~~~Sp-DG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~-~~~~~p~~SpDG~~ 387 (429)
T PRK03629 322 -APQRI-------TWEGSQNQDADVSS-DGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDT-FLDETPSIAPNGTM 387 (429)
T ss_pred -CeEEe-------ecCCCCccCEEECC-CCCEEEEEEccCCCceEEEEECCCCCeE-EeCCC-CCCCCceECCCCCE
Confidence 12221 11223355789999 77777665433 34888999888643 33321 23456889999973
No 197
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=5.5e-15 Score=117.02 Aligned_cols=133 Identities=19% Similarity=0.259 Sum_probs=104.4
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~ 209 (279)
.+.|+|...+|++++ ...|++||+..+..++.+..... .|..++++|.|..|++| .|+.+..||+.-+.++++
T Consensus 571 ~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~k-----wiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk 644 (733)
T KOG0650|consen 571 RVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSK-----WISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYK 644 (733)
T ss_pred EEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCe-----eeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhH
Confidence 345677777777776 56799999998877777765554 88999999999888866 999999999987554444
Q ss_pred eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC------CC---eEEEEEeecCC----CEEEEEEccC
Q 023672 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED------NM---ELLYVLHGQEG----GVTHVSKLSS 276 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~------~~---~~~~~~~~~~~----~v~~~~~spd 276 (279)
. + .-|...+++++|++ .-.++++|+.||++.|+.-. .. -++..+++|.. +|.+..|||.
T Consensus 645 ~---l----r~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~ 716 (733)
T KOG0650|consen 645 T---L----RLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPR 716 (733)
T ss_pred H---h----hhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCC
Confidence 3 3 57888999999999 88999999999999988532 22 25678888865 4899999985
Q ss_pred C
Q 023672 277 A 277 (279)
Q Consensus 277 g 277 (279)
-
T Consensus 717 q 717 (733)
T KOG0650|consen 717 Q 717 (733)
T ss_pred C
Confidence 3
No 198
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.1e-14 Score=115.18 Aligned_cols=183 Identities=15% Similarity=0.143 Sum_probs=113.6
Q ss_pred cCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 56 SSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++.... +. ...+.+....
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-----------------l~-~~~g~~~~~~------ 246 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-----------------VA-NFKGSNSAPA------ 246 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-----------------ee-cCCCCccceE------
Confidence 44567789999999999999877643 459999998664311 11 1112223344
Q ss_pred ccCCCCcEEE-EecCCCcEEEE--ECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc
Q 023672 133 ASDPTSCVFA-STTRDHPIHLW--DATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 133 ~~~~~~~~l~-s~~~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~ 207 (279)
|+|||+.|+ +.+.++...+| |+.++. ...+..+.. ......|+|||+.++ ++ .++...+|.+...+..
T Consensus 247 -~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~-----~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~ 319 (427)
T PRK02889 247 -WSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSG-----IDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA 319 (427)
T ss_pred -ECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCC-----CCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc
Confidence 488998776 45677775555 454444 333332221 345678999999887 55 4566677766532222
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
...+ .. .+ .......|+| +|.+|+..+.++ .|.+||+.+++... +... .......|+|||++
T Consensus 320 ~~~l-t~----~g--~~~~~~~~Sp-DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~~-~~~~~p~~spdg~~ 384 (427)
T PRK02889 320 AQRV-TF----TG--SYNTSPRISP-DGKLLAYISRVGGAFKLYVQDLATGQVTA-LTDT-TRDESPSFAPNGRY 384 (427)
T ss_pred eEEE-ec----CC--CCcCceEECC-CCCEEEEEEccCCcEEEEEEECCCCCeEE-ccCC-CCccCceECCCCCE
Confidence 2222 11 11 2234678999 888887766554 59999998887543 3322 33467899999974
No 199
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.65 E-value=3.1e-13 Score=101.25 Aligned_cols=139 Identities=12% Similarity=0.220 Sum_probs=109.0
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEE--eeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
.++++|+..+++++... +...+...+.++++++.+.+||. ....|.|.|||..+-+.. .
T Consensus 107 ~IyIydI~~MklLhTI~---t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v----------------~ 167 (391)
T KOG2110|consen 107 SIYIYDIKDMKLLHTIE---TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV----------------N 167 (391)
T ss_pred cEEEEecccceeehhhh---ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee----------------e
Confidence 47889999999988433 34456677888888888888883 334789999999864321 1
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCc-EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG 191 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (279)
....|.+++.+++| +++|.+||+++..|+ |||+.+.+|+.+..++.... ...|++++|+|++.+|+++
T Consensus 168 -~I~aH~~~lAalaf-------s~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~---~~~IySL~Fs~ds~~L~~s 236 (391)
T KOG2110|consen 168 -TINAHKGPLAALAF-------SPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY---PVSIYSLSFSPDSQFLAAS 236 (391)
T ss_pred -EEEecCCceeEEEE-------CCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce---eeEEEEEEECCCCCeEEEe
Confidence 23367778888866 889999999999997 68999999999988875543 2278999999999999955
Q ss_pred -cCCeEEEEEccC
Q 023672 192 -YNKSVRVFDVHR 203 (279)
Q Consensus 192 -~d~~i~~~d~~~ 203 (279)
..++|++|.+..
T Consensus 237 S~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 237 SNTETVHIFKLEK 249 (391)
T ss_pred cCCCeEEEEEecc
Confidence 899999999875
No 200
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=5.2e-15 Score=112.32 Aligned_cols=183 Identities=19% Similarity=0.227 Sum_probs=123.4
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
-+++|+.+...... ....|.+.|.++.|+|||++|++-+.| ..+||+.+++........
T Consensus 167 ~lRv~~~Ps~~t~l------~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~-------------- 225 (398)
T KOG0771|consen 167 TLRVWEWPSMLTIL------EEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP-------------- 225 (398)
T ss_pred eEEEEecCcchhhh------hhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC--------------
Confidence 36778877776655 677899999999999999999999999 899999998733221110
Q ss_pred eecCCCceEEEEeeCcccccCCCC-----cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTS-----CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~-----~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
.........+.| +.++ ..++.....+.|+.|++.....-..++..........|.+++.+++|++++
T Consensus 226 -~~k~~~~~~cRF-------~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~A 297 (398)
T KOG0771|consen 226 -FSKDEMFSSCRF-------SVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLA 297 (398)
T ss_pred -cccchhhhhcee-------cccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEE
Confidence 111122233333 2222 223333445567776664322211122111111122789999999999999
Q ss_pred Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
.| .||.|.|++..+- +.. ......|...|+.+.|+| +.+.+++.+.|..+.|..+.-
T Consensus 298 lGT~dGsVai~~~~~l----q~~---~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 298 LGTMDGSVAIYDAKSL----QRL---QYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EeccCCcEEEEEecee----eee---EeehhhheeeeeeEEEcC-CcCcccccccCCceeEEEEee
Confidence 77 9999999999762 332 333378999999999999 889999999999888877643
No 201
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=2.2e-15 Score=115.74 Aligned_cols=199 Identities=15% Similarity=0.173 Sum_probs=142.8
Q ss_pred eEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc-------------ccCCCCcccceeeecCCCceEEEEeeC
Q 023672 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-------------LAKDQDSYEASLVVTEGESVYDFCWFP 129 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (279)
-..+.++.+|+.|+.|+.-|.|..+|+.++.+..+..... ++....+++..+ -..+..+.|+.-+.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvY-D~~GtElHClk~~~ 210 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVY-DNNGTELHCLKRHI 210 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEe-cCCCcEEeehhhcC
Confidence 3568889999999999999999999999887643322111 111122222211 12222333332211
Q ss_pred --cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCC
Q 023672 130 --HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR 206 (279)
Q Consensus 130 --~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~ 206 (279)
..+.|-|..-+|++++..|.++.-|+.+|+.+..+..... .+..++-+|-+..+-.| ..|+|.+|..... .
T Consensus 211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G-----~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-e 284 (545)
T KOG1272|consen 211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAG-----RTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-E 284 (545)
T ss_pred chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCC-----ccchhhcCCccceEEEcCCCceEEecCCCCc-c
Confidence 1234566777899999999999999999999988876654 67788889988877788 9999999999873 2
Q ss_pred ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
++ ..+ -.|.++|.++++.+ +|.+++|.+.|..++|||+++...+.++.. ..+...++||.-|
T Consensus 285 PL---vKi----LcH~g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg 346 (545)
T KOG1272|consen 285 PL---VKI----LCHRGPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG 346 (545)
T ss_pred hH---HHH----HhcCCCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc
Confidence 22 222 57899999999999 999999999999999999998876666554 3455666666544
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.8e-14 Score=117.41 Aligned_cols=191 Identities=16% Similarity=0.149 Sum_probs=120.5
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee-CCCeEEEE--eCCCCccccccccccccCCCCccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS-EDKTLRIF--SLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~-~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
.+++||+.++.... .....+| ...++|+|||+.|+.++ .+|.+.|| |+.++...
T Consensus 229 ~i~i~dl~tg~~~~----l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~---------------- 285 (429)
T PRK01742 229 QLVVHDLRSGARKV----VASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPS---------------- 285 (429)
T ss_pred EEEEEeCCCCceEE----EecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeE----------------
Confidence 36677776654321 1123344 44689999999888764 68877666 44433210
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
....+...+....| +|+|+.|+.++ .++...||++... .....+ .+. . ....|+|+|+.++
T Consensus 286 --~lt~~~~~~~~~~w-------SpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~------~-~~~~~SpDG~~ia 348 (429)
T PRK01742 286 --QLTSGAGNNTEPSW-------SPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGR------G-YSAQISADGKTLV 348 (429)
T ss_pred --eeccCCCCcCCEEE-------CCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCC------C-CCccCCCCCCEEE
Confidence 11112223444555 88898776554 5778888876532 222222 211 2 3578999999998
Q ss_pred EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec--CCCeEEEEEeecCCC
Q 023672 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE--DNMELLYVLHGQEGG 267 (279)
Q Consensus 190 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~--~~~~~~~~~~~~~~~ 267 (279)
......+.+||+.++. . .. +. ..+ ...++.|+| ++.+|+.++.++.+.+|++ .++..+..+..|.+.
T Consensus 349 ~~~~~~i~~~Dl~~g~-~-~~---lt---~~~--~~~~~~~sP-dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g~ 417 (429)
T PRK01742 349 MINGDNVVKQDLTSGS-T-EV---LS---STF--LDESPSISP-NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDGQ 417 (429)
T ss_pred EEcCCCEEEEECCCCC-e-EE---ec---CCC--CCCCceECC-CCCEEEEEEcCCCceEEEEEECCCCceEEccCCCCC
Confidence 5533456669998732 1 11 11 111 124678999 8999999998998888876 367888889888888
Q ss_pred EEEEEEccC
Q 023672 268 VTHVSKLSS 276 (279)
Q Consensus 268 v~~~~~spd 276 (279)
+..++|||-
T Consensus 418 ~~~p~wsp~ 426 (429)
T PRK01742 418 VKFPAWSPY 426 (429)
T ss_pred CCCcccCCC
Confidence 999999984
No 203
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.64 E-value=5.4e-15 Score=118.78 Aligned_cols=172 Identities=16% Similarity=0.266 Sum_probs=129.2
Q ss_pred ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (279)
.|..++|-|||..|+.+.. ..+.+||.+.|...+ ..-+|...|++++| +.||..+
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llq-----------------tLKgHKDtVycVAy-------s~dGkrF 68 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQ-----------------PLKGHKDTVYCVAY-------AKDGKRF 68 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCccccc-----------------ccccccceEEEEEE-------ccCCcee
Confidence 7999999999998887764 479999999875533 22456779999988 7899999
Q ss_pred EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCC
Q 023672 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (279)
Q Consensus 142 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 221 (279)
++|+.|..|.+|+..- +-+..+. |.. .|.|+.|+|-...++++.=...-+|..... .. .+ ...
T Consensus 69 ASG~aDK~VI~W~~kl-EG~LkYS-H~D-----~IQCMsFNP~~h~LasCsLsdFglWS~~qK-----~V--~K---~ks 131 (1081)
T KOG1538|consen 69 ASGSADKSVIIWTSKL-EGILKYS-HND-----AIQCMSFNPITHQLASCSLSDFGLWSPEQK-----SV--SK---HKS 131 (1081)
T ss_pred ccCCCceeEEEecccc-cceeeec-cCC-----eeeEeecCchHHHhhhcchhhccccChhhh-----hH--Hh---hhh
Confidence 9999999999998642 2222232 333 899999999999988664445667877651 11 11 122
Q ss_pred CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe---ecCCCEEEEEEccCC
Q 023672 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH---GQEGGVTHVSKLSSA 277 (279)
Q Consensus 222 ~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~---~~~~~v~~~~~spdg 277 (279)
...+.+++|.. +|++|+.|-.||+|.+-+ .++++...+. +.+.+|++++|+|..
T Consensus 132 s~R~~~CsWtn-DGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 132 SSRIICCSWTN-DGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred heeEEEeeecC-CCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCC
Confidence 45788999999 999999999999999876 4555544444 366799999999963
No 204
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=7.6e-15 Score=105.15 Aligned_cols=167 Identities=16% Similarity=0.184 Sum_probs=115.3
Q ss_pred CCCCceEEEEEcc-CCC--eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 58 IPNNFLKGIKWSP-DGS--SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 58 ~h~~~v~~~~~~~-~~~--~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
+..+.+.|..+.. +++ +|+.|-.+|.|.+||+.++...-.. +.. ..+..-...+..+|.++.|.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~------~~~-~kv~~~~ash~qpvlsldyas----- 215 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL------PQS-SKVESPNASHKQPVLSLDYAS----- 215 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc------ccc-cccccchhhccCcceeeeech-----
Confidence 4457788888654 344 4557788999999999976221111 111 111112345667899988743
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCee----eEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCcee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLL----RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~ 209 (279)
....=++|+.+..+..|.+..... ......... .|..+.+-||++.++ +|-|+.||||..++. +
T Consensus 216 --~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknp-----Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl-~--- 284 (323)
T KOG0322|consen 216 --SCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNP-----GVSGVRIRPDGKILATAGWDHRIRVYSWRTL-N--- 284 (323)
T ss_pred --hhcCCcCCCccccceeeeeccccCcccccceEEecCC-----CccceEEccCCcEEeecccCCcEEEEEeccC-C---
Confidence 222346677777888898864321 112222222 678899999999999 569999999999983 2
Q ss_pred eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
.+..+ +-|...|++++|+| +..++++++.|+.|.+|++
T Consensus 285 pLAVL----kyHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 285 PLAVL----KYHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred chhhh----hhhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 23333 68889999999999 8899999999999999986
No 205
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.63 E-value=5.3e-14 Score=114.91 Aligned_cols=230 Identities=12% Similarity=0.097 Sum_probs=147.7
Q ss_pred ceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672 31 EYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQD 108 (279)
Q Consensus 31 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 108 (279)
.+.-.+.+||+.................|..+|+.+.|..+. .-|++++.||.|..|+++.-...........
T Consensus 262 ~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~----- 336 (555)
T KOG1587|consen 262 CYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES----- 336 (555)
T ss_pred ccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc-----
Confidence 344477889987766533333333567799999999997643 4599999999999998774332111111110
Q ss_pred cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeee--EEEecc-CccccccceeeEEECCCC
Q 023672 109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLR--CTYRAY-DAVDEITAAFSVAFNPTG 185 (279)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~--~~~~~~-~~~~~~~~v~~~~~~~~~ 185 (279)
.............++.+.|.|. +-..++.|+.+|.|.--+-...+.. ..++.+ ....+..+|+++.++|-+
T Consensus 337 ~~~~~~~~~~~~~~t~~~F~~~------~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~ 410 (555)
T KOG1587|consen 337 KKHKGQQSSKAVGATSLKFEPT------DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY 410 (555)
T ss_pred ccccccccccccceeeEeeccC------CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc
Confidence 0000111223345677777654 3447899999999876443322111 112222 122333489999999987
Q ss_pred CEEE-EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC--eEEEEEe
Q 023672 186 TKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM--ELLYVLH 262 (279)
Q Consensus 186 ~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~--~~~~~~~ 262 (279)
..++ ++.|-+++||.......+. ..+ ..+...+++++|||.....++++..||.|.+||+... +++.+..
T Consensus 411 ~k~fls~gDW~vriWs~~~~~~Pl---~~~----~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 411 PKNFLSVGDWTVRIWSEDVIASPL---LSL----DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred cceeeeeccceeEeccccCCCCcc---hhh----hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence 6655 5579999999987322221 122 4556679999999988889999999999999999654 4555555
Q ss_pred ecCCCEEEEEEccCCC
Q 023672 263 GQEGGVTHVSKLSSAY 278 (279)
Q Consensus 263 ~~~~~v~~~~~spdg~ 278 (279)
.+....+.+.|+++|+
T Consensus 484 ~~~~~l~~~~~s~~g~ 499 (555)
T KOG1587|consen 484 VCSPALTRVRWSPNGK 499 (555)
T ss_pred ccccccceeecCCCCc
Confidence 5555667777888775
No 206
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.61 E-value=1.1e-12 Score=106.92 Aligned_cols=200 Identities=24% Similarity=0.352 Sum_probs=143.1
Q ss_pred eeeEecCCCCc-ccceeeeeeccCCCC-CceEEEEE-ccCCC-eEEEeeC-CCeEEEEeCCC-CccccccccccccCCCC
Q 023672 35 PLIRFDVPPHR-TYHFYNQFRTSSIPN-NFLKGIKW-SPDGS-SFLTSSE-DKTLRIFSLPE-NGISYDVNACSLAKDQD 108 (279)
Q Consensus 35 ~~~~~d~~~~~-~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~-~l~t~~~-dg~i~iwd~~~-~~~~~~~~~~~~~~~~~ 108 (279)
.+.+|+..... ... .+.++. ..+..+.+ ++++. .++..+. |+.+.+|+... ...
T Consensus 88 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------------- 147 (466)
T COG2319 88 TIKLWDLDNGEKLIK------SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL-------------- 147 (466)
T ss_pred cEEEEEcCCCceeEE------EEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCCeE--------------
Confidence 45566665554 222 333322 36777777 78787 5555444 99999999985 211
Q ss_pred cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-
Q 023672 109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT- 186 (279)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~- 186 (279)
......+...|..+.| +|++..+++++. |+.+++|++..+..+..+..+.. .+.+++|+|++.
T Consensus 148 ---~~~~~~~~~~v~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~ 212 (466)
T COG2319 148 ---IRTLEGHSESVTSLAF-------SPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD-----PVSSLAFSPDGGL 212 (466)
T ss_pred ---EEEEecCcccEEEEEE-------CCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC-----ceEEEEEcCCcce
Confidence 1134456667777766 677878888885 99999999998888888877665 899999999997
Q ss_pred EEEE-ecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE-EEEEeec
Q 023672 187 KIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQ 264 (279)
Q Consensus 187 ~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~ 264 (279)
.+++ +.|+.+++||...+ ..... ...+|.... ...|+| ++.++++++.|+.+++|+++.... +..+..|
T Consensus 213 ~~~~~~~d~~i~~wd~~~~----~~~~~---~~~~~~~~~-~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 283 (466)
T COG2319 213 LIASGSSDGTIRLWDLSTG----KLLRS---TLSGHSDSV-VSSFSP-DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH 283 (466)
T ss_pred EEEEecCCCcEEEEECCCC----cEEee---ecCCCCcce-eEeECC-CCCEEEEecCCCcEEEeeecCCCcEEEEEecC
Confidence 5555 59999999988742 22221 125666654 338999 778888999999999999987664 5555678
Q ss_pred CCCEEEEEEccCCC
Q 023672 265 EGGVTHVSKLSSAY 278 (279)
Q Consensus 265 ~~~v~~~~~spdg~ 278 (279)
...|.++.|+|++.
T Consensus 284 ~~~v~~~~~~~~~~ 297 (466)
T COG2319 284 SSSVLSVAFSPDGK 297 (466)
T ss_pred CccEEEEEECCCCC
Confidence 88999999999654
No 207
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=1.1e-13 Score=116.45 Aligned_cols=218 Identities=16% Similarity=0.168 Sum_probs=133.9
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
.+.+||...++.+..+.. -......|+.+.+-. |..++++|+.||.|+||+--....... ..... - ....
T Consensus 1087 ~i~vwd~e~~~~l~~F~n---~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~-eLVTa---w-~~Ls 1158 (1387)
T KOG1517|consen 1087 RIRVWDWEKGRLLNGFDN---GAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKP-ELVTA---W-SSLS 1158 (1387)
T ss_pred eEEEEecccCceeccccC---CCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCc-eeEEe---e-cccc
Confidence 567788877777653332 223456799999855 556899999999999997543211000 00000 0 0000
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC-CCCCEEEEe
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN-PTGTKIFAG 191 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~ 191 (279)
.......+.=.-+.| .....+|++++.-..|+|||+..-.....+..... ..|+++.-+ +.|+.+++|
T Consensus 1159 ~~~~~~r~~~~v~dW-------qQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~----t~vTaLS~~~~~gn~i~AG 1227 (1387)
T KOG1517|consen 1159 DQLPGARGTGLVVDW-------QQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS----TLVTALSADLVHGNIIAAG 1227 (1387)
T ss_pred ccCccCCCCCeeeeh-------hhhCCeEEecCCeeEEEEEecccceeEeecccCCC----ccceeecccccCCceEEEe
Confidence 000011111133344 44555666666688999999988777777665432 255665443 236888999
Q ss_pred -cCCeEEEEEccCCCCceeeeeecccccCCCCCc--eEEEEEccCCCc-EEEEEeCCCcEEEEecCCCeEE--EEEeecC
Q 023672 192 -YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI--MSAIAFSPTHTG-MLAIGSYSQTSAIYREDNMELL--YVLHGQE 265 (279)
Q Consensus 192 -~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~~~~~--~~~~~~~ 265 (279)
.||.|++||.|..... ..+... ..|... |..+.+.+ +|. .|++|+.||.|++||+|..... ..+..|.
T Consensus 1228 faDGsvRvyD~R~a~~d-s~v~~~----R~h~~~~~Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1228 FADGSVRVYDRRMAPPD-SLVCVY----REHNDVEPIVHLSLQR-QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHW 1301 (1387)
T ss_pred ecCCceEEeecccCCcc-ccceee----cccCCcccceeEEeec-CCCcceeeeccCCeEEEEecccCcccccceeeecc
Confidence 9999999999985332 122222 466665 99999998 554 5999999999999999984222 2222232
Q ss_pred --C-CEEEEEEccCC
Q 023672 266 --G-GVTHVSKLSSA 277 (279)
Q Consensus 266 --~-~v~~~~~spdg 277 (279)
+ .+++|..|++.
T Consensus 1302 ~yGs~lTal~VH~ha 1316 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHA 1316 (1387)
T ss_pred ccCccceeeeeccCC
Confidence 2 37777777654
No 208
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=3.6e-14 Score=112.02 Aligned_cols=211 Identities=15% Similarity=0.234 Sum_probs=137.1
Q ss_pred CCCCceEEEEEccCCCeE-EEeeCCCeEEEEeCCCCcccccccc------ccccC---------C---------------
Q 023672 58 IPNNFLKGIKWSPDGSSF-LTSSEDKTLRIFSLPENGISYDVNA------CSLAK---------D--------------- 106 (279)
Q Consensus 58 ~h~~~v~~~~~~~~~~~l-~t~~~dg~i~iwd~~~~~~~~~~~~------~~~~~---------~--------------- 106 (279)
.|...-+.|..+|||+|+ |||..-..|++||+.+..+..+... ...+. .
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 567778899999999976 5788899999999987644111000 00000 0
Q ss_pred ------------CCcccc-eeeecCCCceEEEEe------eC--------cccccCCCCcEEEEecCCCcEEEEECCCCe
Q 023672 107 ------------QDSYEA-SLVVTEGESVYDFCW------FP--------HMSASDPTSCVFASTTRDHPIHLWDATTGL 159 (279)
Q Consensus 107 ------------~~~~~~-~~~~~~~~~v~~~~~------~~--------~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~ 159 (279)
...+.+ .+..+.+..|+.+-. .| .++.+++...+|++|+.+|.|..||.++..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ks 208 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKS 208 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhh
Confidence 000000 111122222322211 01 134567777899999999999999999887
Q ss_pred eeEEEeccCc------cccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEcc
Q 023672 160 LRCTYRAYDA------VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232 (279)
Q Consensus 160 ~~~~~~~~~~------~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 232 (279)
.+..+..... ......|+++.|+.+|-.+++| .+|.+.+||+++. +++- . ...+..-+|..+.|.+
T Consensus 209 rv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-~pl~----~--kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 209 RVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-KPLL----V--KDHGYELPIKKLDWQD 281 (703)
T ss_pred hheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-Ccee----e--cccCCccceeeecccc
Confidence 7666654332 1222359999999999999988 9999999999983 2221 1 1133456899999988
Q ss_pred CCC-cEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 233 THT-GMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 233 ~~~-~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
.++ ..+++ .....++|||-.+|+....+.. ...+..+++-|++
T Consensus 282 ~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEp-t~~lND~C~~p~s 325 (703)
T KOG2321|consen 282 TDQQNKVVS-MDKRILKIWDECTGKPMASIEP-TSDLNDFCFVPGS 325 (703)
T ss_pred cCCCceEEe-cchHHhhhcccccCCceeeccc-cCCcCceeeecCC
Confidence 433 34444 4456799999999998888774 4458888888764
No 209
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.60 E-value=1.2e-13 Score=99.81 Aligned_cols=91 Identities=16% Similarity=0.295 Sum_probs=71.9
Q ss_pred ceeeEEECCCCCEEE--Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC---CCcEE
Q 023672 175 AAFSVAFNPTGTKIF--AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSA 248 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~--~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~---dg~i~ 248 (279)
+|.+++|+|+|+.++ .| .+..|.+||++. +.+..+ +...+..+.|+| +|++|++++. .|.|.
T Consensus 61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~-----~~i~~~------~~~~~n~i~wsP-~G~~l~~~g~~n~~G~l~ 128 (194)
T PF08662_consen 61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG-----KKIFSF------GTQPRNTISWSP-DGRFLVLAGFGNLNGDLE 128 (194)
T ss_pred ceEEEEECcCCCEEEEEEccCCcccEEEcCcc-----cEeEee------cCCCceEEEECC-CCCEEEEEEccCCCcEEE
Confidence 699999999998876 35 678999999973 333333 134678899999 8999998864 46699
Q ss_pred EEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 249 IYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 249 ~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
+||+++.+.+.... |. .++.++|+|||+|
T Consensus 129 ~wd~~~~~~i~~~~-~~-~~t~~~WsPdGr~ 157 (194)
T PF08662_consen 129 FWDVRKKKKISTFE-HS-DATDVEWSPDGRY 157 (194)
T ss_pred EEECCCCEEeeccc-cC-cEEEEEEcCCCCE
Confidence 99999999887776 33 4789999999986
No 210
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=4.5e-13 Score=109.10 Aligned_cols=172 Identities=14% Similarity=0.135 Sum_probs=110.0
Q ss_pred CceEEEEEccCCCeEEEe-eCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672 61 NFLKGIKWSPDGSSFLTS-SEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (279)
+.+..++|+|||+.|+.. +.+| .|.+||+.++.... + ......+....| +|+
T Consensus 243 ~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~-----------------l-t~~~~~~~~~~w-------SPD 297 (429)
T PRK03629 243 RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ-----------------V-TDGRSNNTEPTW-------FPD 297 (429)
T ss_pred CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-----------------c-cCCCCCcCceEE-------CCC
Confidence 345578999999988754 4455 48888987653311 1 111123344444 889
Q ss_pred CcEEEEecCC-C--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cC--CeEEEEEccCCCCceee
Q 023672 138 SCVFASTTRD-H--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN--KSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 138 ~~~l~s~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d--~~i~~~d~~~~~~~~~~ 210 (279)
|+.|+..+.+ + .|.++|+.+++.. .+..... ......|+|+|+.++ ++ .+ ..|.+||+.++ . ..
T Consensus 298 G~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~-----~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g-~-~~- 368 (429)
T PRK03629 298 SQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGS-----QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-G-VQ- 368 (429)
T ss_pred CCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCC-----CccCEEECCCCCEEEEEEccCCCceEEEEECCCC-C-eE-
Confidence 9988776654 4 4555577766543 3322222 345789999999887 44 33 45888998763 1 11
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc---EEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT---SAIYREDNMELLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~---i~~wd~~~~~~~~~~~~~~~~v~~~~~sp 275 (279)
.+.. . .......|+| +|.+|+.++.++. +.++++ ++.....+..|.+.+...+|+|
T Consensus 369 --~Lt~---~--~~~~~p~~Sp-DG~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 369 --VLTD---T--FLDETPSIAP-NGTMVIYSSSQGMGSVLNLVST-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred --EeCC---C--CCCCCceECC-CCCEEEEEEcCCCceEEEEEEC-CCCCeEECccCCCCcCCcccCC
Confidence 2211 1 1233578999 8888888877764 677776 5666677888888899999998
No 211
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=1e-13 Score=104.53 Aligned_cols=187 Identities=18% Similarity=0.256 Sum_probs=129.7
Q ss_pred ceEEEEEccCC-CeEEEeeCC--CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 62 FLKGIKWSPDG-SSFLTSSED--KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 62 ~v~~~~~~~~~-~~l~t~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
.+..|.-++.. ..+|+|+.. ..++|||++............ .+. +...-.-.++++.|.+. +| .
T Consensus 150 g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvp----nD~----L~LrVPvW~tdi~Fl~g----~~-~ 216 (412)
T KOG3881|consen 150 GLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVP----NDR----LGLRVPVWITDIRFLEG----SP-N 216 (412)
T ss_pred ceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCC----Ccc----ccceeeeeeccceecCC----CC-C
Confidence 34555555533 456679988 889999998763322111111 000 11111223445555332 11 6
Q ss_pred cEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672 139 CVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
..|++++.-+.+++||.+.+ +++..+..... ++.++...|+++++++| .-+.+..||++.+ + ....
T Consensus 217 ~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~-----~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~----k---l~g~ 284 (412)
T KOG3881|consen 217 YKFATITRYHQVRLYDTRHQRRPVAQFDFLEN-----PISSTGLTPSGNFIYTGNTKGQLAKFDLRGG----K---LLGC 284 (412)
T ss_pred ceEEEEecceeEEEecCcccCcceeEeccccC-----cceeeeecCCCcEEEEecccchhheecccCc----e---eecc
Confidence 68999999999999999875 56777776665 89999999999999988 8899999999984 1 2222
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp 275 (279)
.+.+..+.|.++..+| ...+|++++-|..+||+|+.+.+++...- -...++++.+.+
T Consensus 285 ~~kg~tGsirsih~hp-~~~~las~GLDRyvRIhD~ktrkll~kvY-vKs~lt~il~~~ 341 (412)
T KOG3881|consen 285 GLKGITGSIRSIHCHP-THPVLASCGLDRYVRIHDIKTRKLLHKVY-VKSRLTFILLRD 341 (412)
T ss_pred ccCCccCCcceEEEcC-CCceEEeeccceeEEEeecccchhhhhhh-hhccccEEEecC
Confidence 2367788999999999 89999999999999999999977664432 123345555544
No 212
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.58 E-value=2.3e-13 Score=100.17 Aligned_cols=181 Identities=16% Similarity=0.227 Sum_probs=129.9
Q ss_pred eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCC-ccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
...++..|...|+++.|+|..+.|++++.|..-.||....+ ..... ..........+++.|
T Consensus 47 ~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~Wkpt---------------lvLlRiNrAAt~V~W--- 108 (361)
T KOG1523|consen 47 PAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPT---------------LVLLRINRAATCVKW--- 108 (361)
T ss_pred eceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccc---------------eeEEEeccceeeEee---
Confidence 33478889999999999999999999999999999998433 22111 134556678899988
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC-----
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP----- 204 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~----- 204 (279)
+|.++.||+|+....|.||-.+..+.-..-+ |-.+.....|.+++|+|++-++++| .|+..+||..--.
T Consensus 109 ----sP~enkFAVgSgar~isVcy~E~ENdWWVsK-hikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdek 183 (361)
T KOG1523|consen 109 ----SPKENKFAVGSGARLISVCYYEQENDWWVSK-HIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEK 183 (361)
T ss_pred ----cCcCceEEeccCccEEEEEEEecccceehhh-hhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccC
Confidence 7789999999999999999887544321111 1111112378999999999999977 8999999865310
Q ss_pred --CCcee---eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672 205 --GRDFE---KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (279)
Q Consensus 205 --~~~~~---~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~ 256 (279)
..+.. .+..+........+.+..+.|+| .|..|+-.+.|..+.+-|.....
T Consensus 184 pap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~-sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 184 PAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSP-SGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred CCCCCCccCCcHHHHHHhhccCCCceeeeEeCC-CCCEeeEecCCCceEEeecCCCc
Confidence 00000 11111122234567899999999 99999999999999999876553
No 213
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=3.4e-13 Score=115.17 Aligned_cols=197 Identities=16% Similarity=0.147 Sum_probs=128.2
Q ss_pred ccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee-ecCCCceEEEEeeCccc
Q 023672 55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFPHMS 132 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 132 (279)
.+.-|...|..++.+++. .+|+|||.||+|++|+..+-...... ...... ...+..+..+..
T Consensus 1043 hL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s-----------~rS~ltys~~~sr~~~vt~----- 1106 (1431)
T KOG1240|consen 1043 HLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGS-----------ARSELTYSPEGSRVEKVTM----- 1106 (1431)
T ss_pred hhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcce-----------eeeeEEEeccCCceEEEEe-----
Confidence 456688889999987754 89999999999999999753221111 111111 224556666654
Q ss_pred ccCCCCcEEEEecCCCcEEEEECCCCee--eE-E-EeccCccccccceeeEEECCC-CC-EEEEe-cCCeEEEEEccCCC
Q 023672 133 ASDPTSCVFASTTRDHPIHLWDATTGLL--RC-T-YRAYDAVDEITAAFSVAFNPT-GT-KIFAG-YNKSVRVFDVHRPG 205 (279)
Q Consensus 133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~--~~-~-~~~~~~~~~~~~v~~~~~~~~-~~-~l~~~-~d~~i~~~d~~~~~ 205 (279)
-+++..+|.++.||.|.+.++..-+. .. . ...........-|..-+|... +. .++.+ .-+.|..||+++..
T Consensus 1107 --~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1107 --CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred --ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 45788999999999999999875211 10 0 011111111112333344332 22 44444 88999999999742
Q ss_pred CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee-cCCCEEEEEEccC
Q 023672 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG-QEGGVTHVSKLSS 276 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~-~~~~v~~~~~spd 276 (279)
. ...++. .-..+.|++++.+| .+.+++.|+..|.+.+||+|-+.++..... +..+++.+..+|-
T Consensus 1185 ~----~w~lk~--~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~ 1249 (1431)
T KOG1240|consen 1185 D----AWRLKN--QLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPT 1249 (1431)
T ss_pred h----HHhhhc--CccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeecc
Confidence 1 112211 23356899999999 999999999999999999999888877663 3467777777663
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=5.3e-12 Score=94.71 Aligned_cols=193 Identities=15% Similarity=0.192 Sum_probs=118.9
Q ss_pred CCceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 60 NNFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 60 ~~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
...|+|++|-|. ++.|+.|+..| |.+|............ .... ......+......+|+++.| ++||
T Consensus 140 QrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~r~~--~~~s--~~~~qvl~~pgh~pVtsmqw-------n~dg 207 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNANRNI--RMMS--THHLQVLQDPGHNPVTSMQW-------NEDG 207 (445)
T ss_pred hcceeEEEeccCCcceeeeeecce-eEEEEcCccccccccc--cccc--ccchhheeCCCCceeeEEEE-------cCCC
Confidence 356999999994 46788888765 8999886432111100 0000 00011122223358999988 6678
Q ss_pred cEEEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672 139 CVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 139 ~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
..+++++. |..|.|||+.++..+........ .+.-+.|+||+.++++. .|+..++|+....-. .+.. .
T Consensus 208 t~l~tAS~gsssi~iWdpdtg~~~pL~~~glg-----g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt-~erw-~--- 277 (445)
T KOG2139|consen 208 TILVTASFGSSSIMIWDPDTGQKIPLIPKGLG-----GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWT-KERW-I--- 277 (445)
T ss_pred CEEeecccCcceEEEEcCCCCCcccccccCCC-----ceeeEEEcCCCCEEEEecccceeeeehhcccce-ecce-e---
Confidence 88888875 56899999999887655532222 67789999999999866 999999997654210 0111 1
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC----Ce-----------EEEEE------ee---cCCCEEEEE
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN----ME-----------LLYVL------HG---QEGGVTHVS 272 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~----~~-----------~~~~~------~~---~~~~v~~~~ 272 (279)
-..+.|...+|+| .|.+|+.++. |.-++|.+.- +. ++..+ .+ ..+++.+|+
T Consensus 278 ---lgsgrvqtacWsp-cGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~la 352 (445)
T KOG2139|consen 278 ---LGSGRVQTACWSP-CGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLA 352 (445)
T ss_pred ---ccCCceeeeeecC-CCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceee
Confidence 1134899999999 6665554442 3334554421 10 11111 11 135788999
Q ss_pred EccCCCC
Q 023672 273 KLSSAYT 279 (279)
Q Consensus 273 ~spdg~~ 279 (279)
|.|.|.|
T Consensus 353 wDpsGey 359 (445)
T KOG2139|consen 353 WDPSGEY 359 (445)
T ss_pred ECCCCCE
Confidence 9999865
No 215
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=5.9e-12 Score=92.83 Aligned_cols=205 Identities=12% Similarity=0.118 Sum_probs=123.0
Q ss_pred eEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccc----------------ccccccccCCCC------cccceeeecCCC
Q 023672 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY----------------DVNACSLAKDQD------SYEASLVVTEGE 120 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~----------------~~~~~~~~~~~~------~~~~~~~~~~~~ 120 (279)
..+++|+.|...+++|..+| .+||+.+.-+... ..+.+.+..+.. ..+....-....
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 34588999988888888776 6888886432200 000000000111 001111111222
Q ss_pred ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECC-CCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEE
Q 023672 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDAT-TGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVR 197 (279)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~ 197 (279)
.|..+.|...-.++.-....|++.- .+.|++|... +.+.+..+.....+. ...+++=+.+..+|+ -| .-|.|.
T Consensus 87 ~i~el~f~~~I~~V~l~r~riVvvl-~~~I~VytF~~n~k~l~~~et~~NPk---GlC~~~~~~~k~~LafPg~k~GqvQ 162 (346)
T KOG2111|consen 87 CIIELSFNSEIKAVKLRRDRIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPK---GLCSLCPTSNKSLLAFPGFKTGQVQ 162 (346)
T ss_pred EEEEEEeccceeeEEEcCCeEEEEe-cCeEEEEEcCCChhheeeeecccCCC---ceEeecCCCCceEEEcCCCccceEE
Confidence 3333333221111111222444443 6789999987 456666665444222 333333333334555 36 779999
Q ss_pred EEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc-EEEEecCCCeEEEEEeec--CCCEEEEEEc
Q 023672 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-SAIYREDNMELLYVLHGQ--EGGVTHVSKL 274 (279)
Q Consensus 198 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-i~~wd~~~~~~~~~~~~~--~~~v~~~~~s 274 (279)
|-|+...... ....+ .+|.+.|.|++++. .|.++||+|..|+ |||||..+|+++..++-- ...|.+|+||
T Consensus 163 i~dL~~~~~~--~p~~I----~AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFS 235 (346)
T KOG2111|consen 163 IVDLASTKPN--APSII----NAHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFS 235 (346)
T ss_pred EEEhhhcCcC--CceEE----EcccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeC
Confidence 9999863211 11222 69999999999999 9999999999998 899999999999998743 2479999999
Q ss_pred cCCCC
Q 023672 275 SSAYT 279 (279)
Q Consensus 275 pdg~~ 279 (279)
||+.+
T Consensus 236 p~~s~ 240 (346)
T KOG2111|consen 236 PNSSW 240 (346)
T ss_pred CCccE
Confidence 99864
No 216
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.56 E-value=4.3e-13 Score=106.23 Aligned_cols=185 Identities=14% Similarity=0.132 Sum_probs=132.7
Q ss_pred cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc-------ccccCCCCcEEE
Q 023672 70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH-------MSASDPTSCVFA 142 (279)
Q Consensus 70 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------~~~~~~~~~~l~ 142 (279)
|...++|....||.++||+...++...+........+........ ..+..+|- ...-+.+...++
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~--------L~~~~s~~k~~~~~~~~~~s~~t~~lv 74 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWG--------LSADYSPMKWLSLEKAKKASLDTSMLV 74 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEE--------EEeccchHHHHhHHHHhhccCCceEEE
Confidence 456789999999999999999887654433322211111100000 11111221 001244556788
Q ss_pred EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCC
Q 023672 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (279)
Q Consensus 143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 221 (279)
-|...|.|-+|++..++....+...... ..|.++.++.+-..|.++ .|..+..|+.... ..+... ...
T Consensus 75 lgt~~g~v~~ys~~~g~it~~~st~~h~---~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~----~~~~~~----~~~ 143 (541)
T KOG4547|consen 75 LGTPQGSVLLYSVAGGEITAKLSTDKHY---GNVNEILDAQRLGCIYSVGADLKVVYILEKEK----VIIRIW----KEQ 143 (541)
T ss_pred eecCCccEEEEEecCCeEEEEEecCCCC---CcceeeecccccCceEecCCceeEEEEecccc----eeeeee----ccC
Confidence 8999999999999999998888754332 378899989888888855 9999999999872 222222 344
Q ss_pred CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 222 ~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
...+.+++.+| ++..|++++ +.|++||+.+++.+.+|.+|.++|++++|..+
T Consensus 144 ~~~~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 144 KPLVSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred CCccceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 56788999999 788999886 78999999999999999999999999999865
No 217
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.55 E-value=4.9e-14 Score=104.71 Aligned_cols=214 Identities=13% Similarity=0.185 Sum_probs=142.3
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccc-cCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSL-AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
.+-|.++.|...|.+||||..+|.|.+|.-...... +...... ......+.......-.+.|..+.|.+. .+.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~-----~n~ 98 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDD-----GNL 98 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc-ceeeeeeeeccCcccchhhhhhhhhhhhhceecCC-----CCc
Confidence 356899999999999999999999999987643221 1111110 011112222223333457888888553 345
Q ss_pred cEEEEecCCCcEEEEECCCCeeeE--------------------EEeccC-----------ccccccceeeEEECCCCCE
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRC--------------------TYRAYD-----------AVDEITAAFSVAFNPTGTK 187 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~--------------------~~~~~~-----------~~~~~~~v~~~~~~~~~~~ 187 (279)
..++....|.+|++|.+....... .+..+. ...|..-|.+++++.|...
T Consensus 99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET 178 (433)
T ss_pred cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence 567777889999999986432111 010000 0123346889999999999
Q ss_pred EEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE------EEEE
Q 023672 188 IFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL------LYVL 261 (279)
Q Consensus 188 l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~------~~~~ 261 (279)
++++.|-.|.+|++.-..+.+..+-.-+..+..-..-|++..|+|....+++-.+..|+|++-|+|...+ +...
T Consensus 179 ~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 179 FLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred EeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 9999999999999987666665554444444444567899999997778899999999999999995431 1111
Q ss_pred e----------ecCCCEEEEEEccCCCC
Q 023672 262 H----------GQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 262 ~----------~~~~~v~~~~~spdg~~ 279 (279)
+ .--..|.++.|+++|||
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGry 286 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRY 286 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcE
Confidence 1 11136889999999987
No 218
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=1.5e-12 Score=107.65 Aligned_cols=198 Identities=13% Similarity=0.183 Sum_probs=140.3
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
...+|+.+... ...........|.-.++|.+++|+++++|+|..||.|.+|.--.. ..+......
T Consensus 182 ~~~~~~v~~~~--~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------------~~~~~t~t~ 246 (792)
T KOG1963|consen 182 KIHIYFVPKHT--KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS-------------SDDSETCTL 246 (792)
T ss_pred eEEEEEecccc--eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc-------------ccccccceE
Confidence 34566666544 222233345567777999999999999999999999999975431 122233334
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecC
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN 193 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d 193 (279)
.-.|...|.++.| +++|.+|++|+..+.+.+|.+.+++ .+-++.-.. +|..+.++||+.+.+. ..|
T Consensus 247 lHWH~~~V~~L~f-------S~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs-----~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 247 LHWHHDEVNSLSF-------SSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGS-----PILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred EEecccccceeEE-------ecCCceEeecccceEEEEEeecCCC-cccccccCC-----eeEEEEEcCCCCeEEEEecC
Confidence 4556667877766 7899999999999999999999988 344443343 8999999999998884 499
Q ss_pred CeEEEEEccCCCCceeeeeecccc----cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGN----KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
..|.+....+.. ....+..+... .....+-.+.++++| ....++-.+..|.|.+||+-+.+.++.+.
T Consensus 314 NqI~li~~~dl~-~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~ 384 (792)
T KOG1963|consen 314 NQIHLIKASDLE-IKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQ 384 (792)
T ss_pred ceEEEEeccchh-hhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEE
Confidence 999998775421 11111111111 123355678899999 88888888999999999998877666554
No 219
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=4e-12 Score=103.90 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=114.5
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
.+..+...+...+|+|||++|+.++.+ ..|.+||+.++.... .......+....|
T Consensus 184 ~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~------------------~~~~~~~~~~~~~---- 241 (417)
T TIGR02800 184 TITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK------------------VASFPGMNGAPAF---- 241 (417)
T ss_pred EeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE------------------eecCCCCccceEE----
Confidence 344566678999999999999877653 479999998653211 1111223333444
Q ss_pred cccCCCCcEEEE-ecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCC
Q 023672 132 SASDPTSCVFAS-TTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRP 204 (279)
Q Consensus 132 ~~~~~~~~~l~s-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~ 204 (279)
+|+++.|+. .+.++ .|.+||+.++..... ..+.. ......|+|+++.|+ ++ .++ .|+++|+.++
T Consensus 242 ---spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l-~~~~~-----~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 242 ---SPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL-TNGPG-----IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred ---CCCCCEEEEEECCCCCccEEEEECCCCCEEEC-CCCCC-----CCCCEEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 788887654 44444 588999987754332 22221 334678999998887 44 333 5777777652
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
. .. .+ ..+...+..+.|+| ++.+|+.++.++ .|.+||+.++... .+... .......|+|||++
T Consensus 313 -~-~~---~l----~~~~~~~~~~~~sp-dg~~i~~~~~~~~~~~i~~~d~~~~~~~-~l~~~-~~~~~p~~spdg~~ 378 (417)
T TIGR02800 313 -E-VR---RL----TFRGGYNASPSWSP-DGDLIAFVHREGGGFNIAVMDLDGGGER-VLTDT-GLDESPSFAPNGRM 378 (417)
T ss_pred -C-EE---Ee----ecCCCCccCeEECC-CCCEEEEEEccCCceEEEEEeCCCCCeE-EccCC-CCCCCceECCCCCE
Confidence 1 11 11 12234566789999 788888777665 7899999876542 33322 23456789999863
No 220
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=6.7e-13 Score=111.96 Aligned_cols=196 Identities=14% Similarity=0.162 Sum_probs=130.2
Q ss_pred eeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672 33 TWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 33 ~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
..-+++||...-..++. ...+-...|+++.-+. .|+.++.|-.||.|++||.+-.... ..+
T Consensus 1186 ~r~IRIWDa~~E~~~~d-----iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d-------------s~v 1247 (1387)
T KOG1517|consen 1186 VRSIRIWDAHKEQVVAD-----IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD-------------SLV 1247 (1387)
T ss_pred eeEEEEEecccceeEee-----cccCCCccceeecccccCCceEEEeecCCceEEeecccCCcc-------------ccc
Confidence 44678899887766552 3444556688877654 5789999999999999998743211 111
Q ss_pred ceeeecCCCc--eEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 112 ASLVVTEGES--VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 112 ~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
. ..-.|... |..+.+.+. ..+ .|++|+.+|.|++||++.......+.........+..+++..++....++
T Consensus 1248 ~-~~R~h~~~~~Iv~~slq~~-----G~~-elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1248 C-VYREHNDVEPIVHLSLQRQ-----GLG-ELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred e-eecccCCcccceeEEeecC-----CCc-ceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeee
Confidence 1 22223333 666665332 122 69999999999999999753222222222111111478999999999999
Q ss_pred EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672 190 AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (279)
Q Consensus 190 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~ 256 (279)
+|..+.|+||++.. .....+.....-+....+.+.|++|+| ..-+|++|+.|.+|.||.....+
T Consensus 1321 sGs~q~ikIy~~~G--~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1321 SGSAQLIKIYSLSG--EQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecCcceEEEEecCh--hhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 98669999999974 222222222222233345679999999 88899999999999999876543
No 221
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=6e-12 Score=89.56 Aligned_cols=154 Identities=12% Similarity=0.145 Sum_probs=109.9
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (279)
-.|++|...|..+-+++++.|+.+.-||+++++... ...+|...|.++.- ......
T Consensus 115 PeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r-----------------~~rGHtDYvH~vv~-------R~~~~q 170 (325)
T KOG0649|consen 115 PEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQR-----------------EYRGHTDYVHSVVG-------RNANGQ 170 (325)
T ss_pred CccceeEeccCCCcEEEecCCeEEEEEEecCCEEEE-----------------EEcCCcceeeeeee-------cccCcc
Confidence 358999999977777777789999999999886533 33455566666643 123346
Q ss_pred EEEecCCCcEEEEECCCCeeeEEEeccCccccc-----cceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecc
Q 023672 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEI-----TAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLK 215 (279)
Q Consensus 141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~ 215 (279)
+++|+.||++++||.++++.+..+......... ..|.+ ..-+..++++|....+.+|.++.. ++...+
T Consensus 171 ilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wiga--la~~edWlvCGgGp~lslwhLrss----e~t~vf- 243 (325)
T KOG0649|consen 171 ILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGA--LAVNEDWLVCGGGPKLSLWHLRSS----ESTCVF- 243 (325)
T ss_pred eeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEE--EeccCceEEecCCCceeEEeccCC----CceEEE-
Confidence 889999999999999999999888766543221 13434 445667999999999999999973 222222
Q ss_pred cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
.-..++..+.|.. ..++++++.+.+.-|.+
T Consensus 244 ----pipa~v~~v~F~~---d~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 244 ----PIPARVHLVDFVD---DCVLIGGEGNHVQSYTL 273 (325)
T ss_pred ----ecccceeEeeeec---ceEEEeccccceeeeee
Confidence 2234577788855 46777777777888875
No 222
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.51 E-value=2.1e-13 Score=106.92 Aligned_cols=95 Identities=21% Similarity=0.351 Sum_probs=80.2
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
.+.|+..+|+|||++||+.+.||.++|||..+..+.... -..-+...+++| +|||+
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~m-----------------kSYFGGLLCvcW-------SPDGK 345 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVM-----------------KSYFGGLLCVCW-------SPDGK 345 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHH-----------------HhhccceEEEEE-------cCCcc
Confidence 457899999999999999999999999999875442211 112257889999 88999
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (279)
+|++|+.|..|.||.+..++.+..-..|.. +|..++|.|
T Consensus 346 yIvtGGEDDLVtVwSf~erRVVARGqGHkS-----WVs~VaFDp 384 (636)
T KOG2394|consen 346 YIVTGGEDDLVTVWSFEERRVVARGQGHKS-----WVSVVAFDP 384 (636)
T ss_pred EEEecCCcceEEEEEeccceEEEecccccc-----ceeeEeecc
Confidence 999999999999999999998888777776 999999997
No 223
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.1e-11 Score=101.50 Aligned_cols=181 Identities=14% Similarity=0.083 Sum_probs=109.9
Q ss_pred cCCCCCceEEEEEccCCCeEEEeeCC---CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 56 SSIPNNFLKGIKWSPDGSSFLTSSED---KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
+..+...+...+|+|||+.|+..+.+ ..|.+|++.++.... + ....+.+....
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-----------------l-~~~~g~~~~~~------ 249 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-----------------I-TNFEGLNGAPA------ 249 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-----------------c-cCCCCCcCCeE------
Confidence 44566788999999999999876543 368889998653311 0 00111222333
Q ss_pred ccCCCCcEEEE-ecCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCC
Q 023672 133 ASDPTSCVFAS-TTRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPG 205 (279)
Q Consensus 133 ~~~~~~~~l~s-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~ 205 (279)
|+|+|+.|+. .+.++ .|.+||+.+++... +..+.. ......|+|+|+.++ ++ .++ .|+++|+.++
T Consensus 250 -~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~-----~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g- 321 (430)
T PRK00178 250 -WSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPA-----IDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGG- 321 (430)
T ss_pred -ECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCC-----CcCCeEECCCCCEEEEEECCCCCceEEEEECCCC-
Confidence 4889987764 44454 58888998876543 322222 345678999998877 44 444 5777777653
Q ss_pred CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC--cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
. ...+ .. .+ .......|+| ++..|+..+. ++ .|.+||+.+++.. .+.. ........|+|||++
T Consensus 322 ~-~~~l-t~----~~--~~~~~~~~Sp-dg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~ 387 (430)
T PRK00178 322 R-AERV-TF----VG--NYNARPRLSA-DGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTM 387 (430)
T ss_pred C-EEEe-ec----CC--CCccceEECC-CCCEEEEEEccCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCE
Confidence 2 2221 11 11 1234578999 7777766554 33 4888999887643 3332 222335689999973
No 224
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=5.5e-12 Score=102.47 Aligned_cols=183 Identities=15% Similarity=0.099 Sum_probs=104.3
Q ss_pred CCCCceEEEEEccCCCe--E-EEeeCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 58 IPNNFLKGIKWSPDGSS--F-LTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 58 ~h~~~v~~~~~~~~~~~--l-~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
.....+..-+|+|||+. + ++...+| .|.+.++.++.... +.. ..+.....
T Consensus 182 ~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-----------------lt~-~~g~~~~p------- 236 (428)
T PRK01029 182 QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-----------------ILA-LQGNQLMP------- 236 (428)
T ss_pred cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-----------------eec-CCCCccce-------
Confidence 34455678899999975 2 2444444 46666776543211 111 11122223
Q ss_pred ccCCCCcEEEEecC-CC----cEEEEECCCC---eeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEE--
Q 023672 133 ASDPTSCVFASTTR-DH----PIHLWDATTG---LLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFD-- 200 (279)
Q Consensus 133 ~~~~~~~~l~s~~~-d~----~i~i~d~~~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d-- 200 (279)
+++|||+.|+..+. +| .+..|++..+ +.......... .....+|+|||+.|+ ++ .++...+|.
T Consensus 237 ~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~-----~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 237 TFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFG-----TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred EECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCC-----CcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 45889988876543 22 3444777653 32222222111 235689999999877 55 566555554
Q ss_pred ccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
+...+.... .+ ..+...+....|+| +|..|+..+.+ ..|.+||+.+++... +......+....|+|||
T Consensus 312 ~~~~g~~~~---~l----t~~~~~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG 382 (428)
T PRK01029 312 IDPEGQSPR---LL----TKKYRNSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDS 382 (428)
T ss_pred CcccccceE---Ee----ccCCCCccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCC
Confidence 432111111 11 22234567889999 77777655433 359999998887643 33333456789999999
Q ss_pred CC
Q 023672 278 YT 279 (279)
Q Consensus 278 ~~ 279 (279)
++
T Consensus 383 ~~ 384 (428)
T PRK01029 383 LH 384 (428)
T ss_pred CE
Confidence 73
No 225
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=8.6e-12 Score=102.04 Aligned_cols=190 Identities=16% Similarity=0.120 Sum_probs=114.9
Q ss_pred eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCC--eEEEEeCCCCccccccccccccCCCCcccc
Q 023672 36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
+++||+.++... .+..+.+...+++|+|||+.|+ +.+.+| .|.+||+.++....
T Consensus 230 l~~~dl~~g~~~-------~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~---------------- 286 (433)
T PRK04922 230 IYVQDLATGQRE-------LVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR---------------- 286 (433)
T ss_pred EEEEECCCCCEE-------EeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----------------
Confidence 556666555432 2223344456789999999776 455555 58889988654311
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCc--EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
+ ..+........ |+|+|+.|+.++. ++. |.++|+.+++.... ..... .....+|+|+|+.++
T Consensus 287 -l-t~~~~~~~~~~-------~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~-----~~~~~~~SpDG~~Ia 351 (433)
T PRK04922 287 -L-TNHFGIDTEPT-------WAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL-TFQGN-----YNARASVSPDGKKIA 351 (433)
T ss_pred -C-ccCCCCccceE-------ECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-ecCCC-----CccCEEECCCCCEEE
Confidence 1 11111223334 4889988877653 444 77778777654332 22222 334689999999988
Q ss_pred E-e-cC--CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEEEe
Q 023672 190 A-G-YN--KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYVLH 262 (279)
Q Consensus 190 ~-~-~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~~~ 262 (279)
. . .+ ..|.+||+.++ .. . .+. +........|+| ++.+|+..+.+ +.|.++++. +.....+.
T Consensus 352 ~~~~~~~~~~I~v~d~~~g-~~-~---~Lt-----~~~~~~~p~~sp-dG~~i~~~s~~~g~~~L~~~~~~-g~~~~~l~ 419 (433)
T PRK04922 352 MVHGSGGQYRIAVMDLSTG-SV-R---TLT-----PGSLDESPSFAP-NGSMVLYATREGGRGVLAAVSTD-GRVRQRLV 419 (433)
T ss_pred EEECCCCceeEEEEECCCC-Ce-E---ECC-----CCCCCCCceECC-CCCEEEEEEecCCceEEEEEECC-CCceEEcc
Confidence 3 3 33 26999999763 21 1 221 111234578999 77776665543 357788874 44556666
Q ss_pred ecCCCEEEEEEcc
Q 023672 263 GQEGGVTHVSKLS 275 (279)
Q Consensus 263 ~~~~~v~~~~~sp 275 (279)
.+.+.+...+|+|
T Consensus 420 ~~~g~~~~p~wsp 432 (433)
T PRK04922 420 SADGEVREPAWSP 432 (433)
T ss_pred cCCCCCCCCccCC
Confidence 6667788889987
No 226
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.49 E-value=7.1e-12 Score=94.78 Aligned_cols=191 Identities=15% Similarity=0.211 Sum_probs=134.4
Q ss_pred CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
.++.|..++.. | ..|++|-.+|.+.+|....+-... .. .+....+..+..+.-.+. ..
T Consensus 104 ~~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hs------------s~--l~~la~g~g~~~~r~~~~------~p 161 (412)
T KOG3881|consen 104 GTKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHS------------SK--LIKLATGPGLYDVRQTDT------DP 161 (412)
T ss_pred ccccccchhhc-C-CEEEEEecCCcEEEEeccCCcccc------------cc--ceeeecCCceeeeccCCC------CC
Confidence 34455555443 3 367888889999999988543210 00 122333344555543222 34
Q ss_pred cEEEEecCC--CcEEEEECCCCeeeEEEeccCcc--c--cccceeeEEECCC--CCEEEEe-cCCeEEEEEccCCCCcee
Q 023672 139 CVFASTTRD--HPIHLWDATTGLLRCTYRAYDAV--D--EITAAFSVAFNPT--GTKIFAG-YNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 139 ~~l~s~~~d--~~i~i~d~~~~~~~~~~~~~~~~--~--~~~~v~~~~~~~~--~~~l~~~-~d~~i~~~d~~~~~~~~~ 209 (279)
.++++|+.. ..+++||+++.+.+..-+..... + -+-+++++.|-+. ...++++ .-+.+++||.+.+.+|+.
T Consensus 162 ~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~ 241 (412)
T KOG3881|consen 162 YIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA 241 (412)
T ss_pred ceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee
Confidence 477779988 78999999988655443322110 0 1126778889887 6777755 899999999998766665
Q ss_pred eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE-EeecCCCEEEEEEccCCCC
Q 023672 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~~ 279 (279)
.+. --..+++++...| ++.++++|..-+.+..||++.++.+.. +.+..+.|+++..+|.+++
T Consensus 242 ~fd-------~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~ 304 (412)
T KOG3881|consen 242 QFD-------FLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPV 304 (412)
T ss_pred Eec-------cccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCce
Confidence 542 2256899999999 999999999999999999999998866 8889999999999998753
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1.2e-11 Score=100.85 Aligned_cols=192 Identities=16% Similarity=0.144 Sum_probs=113.4
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEEeCC--CCccccccccccccCCCCccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIFSLP--ENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~ 111 (279)
.+++||+.+++... +....+.+.+.+|+|||+.|+ +.+.+|...||.++ ++...
T Consensus 221 ~I~~~dl~~g~~~~-------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~---------------- 277 (427)
T PRK02889 221 VVYVHDLATGRRRV-------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR---------------- 277 (427)
T ss_pred EEEEEECCCCCEEE-------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcE----------------
Confidence 36667776665432 222334567899999999887 56778887777654 22110
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CCcEEEEE--CCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DHPIHLWD--ATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~~i~i~d--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (279)
.+ ..+........| +|||+.|+..+. ++...+|. +.+++... +..... ......|+|+|+++
T Consensus 278 -~l-t~~~~~~~~~~w-------SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~-----~~~~~~~SpDG~~I 342 (427)
T PRK02889 278 -RL-TQSSGIDTEPFF-------SPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGS-----YNTSPRISPDGKLL 342 (427)
T ss_pred -EC-CCCCCCCcCeEE-------cCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCC-----CcCceEECCCCCEE
Confidence 01 111112233344 889998876654 45555654 44444322 222221 23467899999998
Q ss_pred E-EecCC---eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-c--EEEEecCCCeEEEEE
Q 023672 189 F-AGYNK---SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-T--SAIYREDNMELLYVL 261 (279)
Q Consensus 189 ~-~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~--i~~wd~~~~~~~~~~ 261 (279)
+ ++.++ .|.+||+.++ .. . .+. .. .......|+| ++..|+.++.++ . +.+.++ ++.....+
T Consensus 343 a~~s~~~g~~~I~v~d~~~g-~~-~---~lt---~~--~~~~~p~~sp-dg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l 410 (427)
T PRK02889 343 AYISRVGGAFKLYVQDLATG-QV-T---ALT---DT--TRDESPSFAP-NGRYILYATQQGGRSVLAAVSS-DGRIKQRL 410 (427)
T ss_pred EEEEccCCcEEEEEEECCCC-Ce-E---Ecc---CC--CCccCceECC-CCCEEEEEEecCCCEEEEEEEC-CCCceEEe
Confidence 8 44332 6999999873 21 1 121 11 1235679999 777666665433 3 555566 56666677
Q ss_pred eecCCCEEEEEEccC
Q 023672 262 HGQEGGVTHVSKLSS 276 (279)
Q Consensus 262 ~~~~~~v~~~~~spd 276 (279)
..+.+.+...+|+|-
T Consensus 411 ~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 411 SVQGGDVREPSWGPF 425 (427)
T ss_pred ecCCCCCCCCccCCC
Confidence 767778888999984
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.46 E-value=1.7e-12 Score=102.42 Aligned_cols=208 Identities=14% Similarity=0.154 Sum_probs=127.6
Q ss_pred cccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccccccccC
Q 023672 28 NQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAK 105 (279)
Q Consensus 28 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 105 (279)
..++...++.+||.-..++++. .-.||...|.++.|-| +.+.+++|+.|..|+++|+...+........
T Consensus 66 ~SGSDD~r~ivWd~~~~Kllhs-----I~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~---- 136 (758)
T KOG1310|consen 66 ASGSDDTRLIVWDPFEYKLLHS-----ISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGM---- 136 (758)
T ss_pred eecCCcceEEeecchhcceeee-----eecccccceeEEeeeccCCCeEEEeccCcceEEEEecccccccccccCc----
Confidence 3455566889999998888875 6779999999999999 5568899999999999999853221100000
Q ss_pred CCCcccceeeecCCCceEEEEeeCcccccCCCC-cEEEEecCCCcEEEEECCCCeeeE-EEeccCc----cccccceeeE
Q 023672 106 DQDSYEASLVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRC-TYRAYDA----VDEITAAFSV 179 (279)
Q Consensus 106 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~-~~~~~~~----~~~~~~v~~~ 179 (279)
........-|...|..++- .|++ +.+.+++.||+|+-+|++....-. ....+.. ........++
T Consensus 137 ---~~~~~~~~cht~rVKria~-------~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~l 206 (758)
T KOG1310|consen 137 ---EETTRCWSCHTDRVKRIAT-------APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCL 206 (758)
T ss_pred ---cchhhhhhhhhhhhhheec-------CCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeee
Confidence 0001122233445555543 4555 689999999999999998642111 1000000 0001156789
Q ss_pred EECCCC-CEEEEe-cCCeEEEEEccCCCCcee--------------eeeecccccCCC--------CCc---eEEEEEcc
Q 023672 180 AFNPTG-TKIFAG-YNKSVRVFDVHRPGRDFE--------------KYSTLKGNKEGQ--------AGI---MSAIAFSP 232 (279)
Q Consensus 180 ~~~~~~-~~l~~~-~d~~i~~~d~~~~~~~~~--------------~~~~~~~~~~~~--------~~~---v~~~~~sp 232 (279)
.++|.. .+|++| .|...++||.+...+++. +...+. .+| ... ++-+.|+|
T Consensus 207 tisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~---p~hlkn~~gn~~~~~~~~t~vtfnp 283 (758)
T KOG1310|consen 207 TISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS---PGHLKNSQGNLDRYITCCTYVTFNP 283 (758)
T ss_pred eecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec---CccccCcccccccceeeeEEEEECC
Confidence 999986 455566 999999999653211110 111111 111 112 45678999
Q ss_pred CCCcEEEEEeCCCcEEEEecCCCeEE
Q 023672 233 THTGMLAIGSYSQTSAIYREDNMELL 258 (279)
Q Consensus 233 ~~~~~l~~~~~dg~i~~wd~~~~~~~ 258 (279)
+|.-|+..-..-.|+++|+..++..
T Consensus 284 -NGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 284 -NGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred -CCcEEEEeeCCeEEEEEeecCCCCc
Confidence 6655554444456999999877643
No 229
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3e-11 Score=98.92 Aligned_cols=181 Identities=14% Similarity=0.087 Sum_probs=105.6
Q ss_pred cCCCCCceEEEEEccCCCeEEEeeC-CC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 56 SSIPNNFLKGIKWSPDGSSFLTSSE-DK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
+..+...+.+..|+|||+.|+..+. ++ .|.+||+.+++... +.. ........
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-----------------lt~-~~g~~~~~------- 267 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-----------------VTS-FPGINGAP------- 267 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-----------------ecC-CCCCcCCe-------
Confidence 3345667889999999999886654 33 58888887653211 000 01111223
Q ss_pred ccCCCCcEEEE-ecCCCc--EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCC
Q 023672 133 ASDPTSCVFAS-TTRDHP--IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPG 205 (279)
Q Consensus 133 ~~~~~~~~l~s-~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~ 205 (279)
+++|+|+.|+. .+.++. |.++|+.+++... +..+.. .....+|+|+|+.++ ++ .++ .|+++|+.++
T Consensus 268 ~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~-----~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g- 340 (448)
T PRK04792 268 RFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRA-----IDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG- 340 (448)
T ss_pred eECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCC-----CccceEECCCCCEEEEEECCCCCceEEEEECCCC-
Confidence 44889987765 455664 7888988776533 222222 345789999999887 44 444 4666666652
Q ss_pred CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC--cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 206 RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
. ...+ +. .+. .....+|+| ++.+|+..+. ++ .|.++|+.+++.. .+... .......|+|||++
T Consensus 341 ~-~~~L-t~----~g~--~~~~~~~Sp-DG~~l~~~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~ 406 (448)
T PRK04792 341 K-VSRL-TF----EGE--QNLGGSITP-DGRSMIMVNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTM 406 (448)
T ss_pred C-EEEE-ec----CCC--CCcCeeECC-CCCEEEEEEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCE
Confidence 2 2221 11 121 234568999 6766665544 44 3566788777643 33322 12234579999873
No 230
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.45 E-value=1.5e-11 Score=91.36 Aligned_cols=93 Identities=11% Similarity=0.088 Sum_probs=64.9
Q ss_pred ceeeEEECCCCCEEEEecC---CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 175 AAFSVAFNPTGTKIFAGYN---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
.+--++|++|+.++++-.| +.+.+||++.- +. ..+ -....+|....|+| +...|+.+.....+++|.
T Consensus 320 g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l-~av----LiQk~piraf~WdP-~~prL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 320 GAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KL-HAV----LIQKHPIRAFEWDP-GRPRLVVCTGKSRLYFWA 389 (447)
T ss_pred ccceeeecCCceEEeeecCCCCceEEEEechhh----hh-hhh----hhhccceeEEEeCC-CCceEEEEcCCceEEEEc
Confidence 5667999999999986544 67999999872 11 111 12345799999999 777777777677799998
Q ss_pred cCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 252 EDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 252 ~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
......+. .+...-.|..+.|+-+|.
T Consensus 390 psg~~~V~-vP~~GF~i~~l~W~~~g~ 415 (447)
T KOG4497|consen 390 PSGPRVVG-VPKKGFNIQKLQWLQPGE 415 (447)
T ss_pred CCCceEEe-cCCCCceeeeEEecCCCc
Confidence 75544332 333345788888887764
No 231
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.44 E-value=9.7e-11 Score=92.92 Aligned_cols=203 Identities=16% Similarity=0.176 Sum_probs=120.2
Q ss_pred ceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672 62 FLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (279)
.-..++++|++++|+++.. +|+|.++++.............. .......+.....-+|+++.++|++++
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~----------~~g~g~~~~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVR----------HEGSGPNPDRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEE----------SEEEESSTTTTSSTCEEEEEE-TTSSE
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecc----------cCCCCCcccccccccceeEEECCCCCE
Confidence 4567899999999998875 89999999986422111100000 000000000011123344566899998
Q ss_pred EEEecC-CCcEEEEECCCCe--ee--EEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeee
Q 023672 141 FASTTR-DHPIHLWDATTGL--LR--CTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 141 l~s~~~-d~~i~i~d~~~~~--~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+++... ...|.+|++.... .. ..+..... .....+.|+|++++++ +. .++.|.++++......+.....
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G----~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG----SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT----SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccC----CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 877643 4479999997654 32 22222221 2678999999999988 55 7899999999843333443333
Q ss_pred cccccCCC--CCceEEEEEccCCCcEEEEE-eCCCcEEEEecC--CCe--EEEEEeecCCCEEEEEEccCCCC
Q 023672 214 LKGNKEGQ--AGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRED--NME--LLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 214 ~~~~~~~~--~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~--~~~--~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
+.....+. ......++++| ++++|+++ ..++.|.+|++. ++. .+..+.......+.++++|||++
T Consensus 234 ~~~~~~~~~~~~~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~ 305 (345)
T PF10282_consen 234 ISTLPEGFTGENAPAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRY 305 (345)
T ss_dssp EESCETTSCSSSSEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSE
T ss_pred eeeccccccccCCceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCE
Confidence 32111111 22678999999 77766655 456789999993 343 34455544456899999999985
No 232
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.44 E-value=6e-12 Score=99.76 Aligned_cols=187 Identities=11% Similarity=0.128 Sum_probs=129.4
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.++.+++..++.+..+ ..-.+.++++..++...+|++|+.||.|..||.+............. .....
T Consensus 156 evYRlNLEqGrfL~P~------~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~------v~s~p 223 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPF------ETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS------VNSHP 223 (703)
T ss_pred ceEEEEcccccccccc------ccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc------cCCCc
Confidence 4667777777776532 22347899999999989999999999999999986544322111110 00001
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC--CCEEEEec
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAGY 192 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~ 192 (279)
.......|+++.| +.+|-.+++|..+|.|.|||+++.+++..-..... .+|..+.|.+. +..+++..
T Consensus 224 g~~~~~svTal~F-------~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e----~pi~~l~~~~~~~q~~v~S~D 292 (703)
T KOG2321|consen 224 GGDAAPSVTALKF-------RDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE----LPIKKLDWQDTDQQNKVVSMD 292 (703)
T ss_pred cccccCcceEEEe-------cCCceeEEeeccCCcEEEEEcccCCceeecccCCc----cceeeecccccCCCceEEecc
Confidence 1111224666665 66788999999999999999999887655432221 27889999876 45566668
Q ss_pred CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
...++|||-.++ ++.. .+ .....+..+|+-| ++.+++++-+++.+..|=+..
T Consensus 293 k~~~kiWd~~~G-k~~a---si-----Ept~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 293 KRILKIWDECTG-KPMA---SI-----EPTSDLNDFCFVP-GSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred hHHhhhcccccC-Ccee---ec-----cccCCcCceeeec-CCceEEEecCCCcceeEEccc
Confidence 889999999984 3332 22 2234588999999 888999999888877665543
No 233
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.43 E-value=1.4e-12 Score=101.27 Aligned_cols=195 Identities=15% Similarity=0.256 Sum_probs=138.0
Q ss_pred eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
....+.+|.+.|+.|.|+..|..|++|+.|..|.+||+..+... .....+|...|..-.|-|.
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~----------------l~f~SGH~~NvfQaKFiP~- 196 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPK----------------LSFESGHCNNVFQAKFIPF- 196 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcc----------------cccccccccchhhhhccCC-
Confidence 34478899999999999999999999999999999999865331 1234456667777777663
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCC-CeeeEE--EeccCccccccceeeEEECCCCCEEE--EecCCeEEEEEccCCCC
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATT-GLLRCT--YRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGR 206 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~-~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~~d~~~~~~ 206 (279)
.+.+.+++++.||.+++=.+.. +.+..+ +..|.. +|..++.-|+..+-+ +|.|+.+.-+|++. +.
T Consensus 197 ----s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g-----~vhklav~p~sp~~f~S~geD~~v~~~Dlr~-~~ 266 (559)
T KOG1334|consen 197 ----SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEG-----PVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQ-DV 266 (559)
T ss_pred ----CCCcCceeccccCceeeeeeccccceecceecccccC-----ccceeeecCCCCCcccccccccceeeeeecc-CC
Confidence 2456789999999999876643 333322 223333 788899999864433 66999999999998 34
Q ss_pred ceeeeeecccccCCCCC---ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe------EEEEEeec------CCCEEEE
Q 023672 207 DFEKYSTLKGNKEGQAG---IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME------LLYVLHGQ------EGGVTHV 271 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~---~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~------~~~~~~~~------~~~v~~~ 271 (279)
+...+..- ..+.. ....++..|-+...+++|+.|..+++||.+.-. .+.++..| .-.|+++
T Consensus 267 pa~~~~cr----~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl 342 (559)
T KOG1334|consen 267 PAEKFVCR----EADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGL 342 (559)
T ss_pred ccceeeee----ccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeE
Confidence 33333221 23333 577899999666799999999999999987532 22333222 2368999
Q ss_pred EEccCC
Q 023672 272 SKLSSA 277 (279)
Q Consensus 272 ~~spdg 277 (279)
+++.+|
T Consensus 343 ~Ysh~~ 348 (559)
T KOG1334|consen 343 VYSHDG 348 (559)
T ss_pred EecCCc
Confidence 999775
No 234
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.43 E-value=1.2e-12 Score=97.02 Aligned_cols=137 Identities=19% Similarity=0.282 Sum_probs=97.3
Q ss_pred EEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE-EEEe
Q 023672 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV-FAST 144 (279)
Q Consensus 66 ~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-l~s~ 144 (279)
.+|||+|+++|++++- .+.|-|.++.+..+.... -..|.-+.| ..+..+ |...
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c------------------ldki~yieW-------~ads~~ilC~~ 67 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC------------------LDKIVYIEW-------KADSCHILCVA 67 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH------------------HHHhhheee-------eccceeeeeee
Confidence 5799999999999876 788888887554322111 123444555 334444 4555
Q ss_pred cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCC
Q 023672 145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA 222 (279)
Q Consensus 145 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 222 (279)
+.++.|.+|++...+-..++..... ++.+++|+|+|+.++ .+ .+-.|.+|.+.+. ....+. -..
T Consensus 68 yk~~~vqvwsl~Qpew~ckIdeg~a-----gls~~~WSPdgrhiL~tseF~lriTVWSL~t~-----~~~~~~----~pK 133 (447)
T KOG4497|consen 68 YKDPKVQVWSLVQPEWYCKIDEGQA-----GLSSISWSPDGRHILLTSEFDLRITVWSLNTQ-----KGYLLP----HPK 133 (447)
T ss_pred eccceEEEEEeecceeEEEeccCCC-----cceeeeECCCcceEeeeecceeEEEEEEeccc-----eeEEec----ccc
Confidence 7788999999998888777776655 788999999998777 55 8999999999973 111221 112
Q ss_pred CceEEEEEccCCCcEEEEEeC
Q 023672 223 GIMSAIAFSPTHTGMLAIGSY 243 (279)
Q Consensus 223 ~~v~~~~~sp~~~~~l~~~~~ 243 (279)
..+..++|+| +|++.+..+.
T Consensus 134 ~~~kg~~f~~-dg~f~ai~sR 153 (447)
T KOG4497|consen 134 TNVKGYAFHP-DGQFCAILSR 153 (447)
T ss_pred cCceeEEECC-CCceeeeeec
Confidence 3457889999 8988877654
No 235
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.8e-11 Score=92.97 Aligned_cols=214 Identities=13% Similarity=0.106 Sum_probs=137.2
Q ss_pred eeeeEecCCCCcccceeeeee-ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccc
Q 023672 34 WPLIRFDVPPHRTYHFYNQFR-TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEA 112 (279)
Q Consensus 34 ~~~~~~d~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 112 (279)
..+.+|++...-..+....+. .-..|...|.|++|....++|++|..+++|.+.|+++.+..
T Consensus 78 ~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi----------------- 140 (609)
T KOG4227|consen 78 MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSI----------------- 140 (609)
T ss_pred ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceee-----------------
Confidence 366777764322222111111 23357789999999999999999999999999999976432
Q ss_pred eeeecC---CCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCCCCE-
Q 023672 113 SLVVTE---GESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTK- 187 (279)
Q Consensus 113 ~~~~~~---~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 187 (279)
....+ .+.|+.+.- +|..+.|++.+.++.|.+||.+... ....+-.... ....+.+.|+|....
T Consensus 141 -~V~~~~~~~~~VY~m~~-------~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~---~~~F~t~~F~P~~P~L 209 (609)
T KOG4227|consen 141 -YVANENNNRGDVYHMDQ-------HPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANS---GKNFYTAEFHPETPAL 209 (609)
T ss_pred -eeecccCcccceeeccc-------CCCCceEEEEecCceEEEEeccCCCCCCceeeecCC---CccceeeeecCCCcee
Confidence 11222 236777754 6677899999999999999998765 2222211111 116788999998754
Q ss_pred EEEe-cCCeEEEEEccCCCCceeee-------------------------eeccc---------------cc-CCCC---
Q 023672 188 IFAG-YNKSVRVFDVHRPGRDFEKY-------------------------STLKG---------------NK-EGQA--- 222 (279)
Q Consensus 188 l~~~-~d~~i~~~d~~~~~~~~~~~-------------------------~~~~~---------------~~-~~~~--- 222 (279)
|++. ..+.+-+||.+.+.+++-.. ..+.. .+ ..|.
T Consensus 210 i~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~G 289 (609)
T KOG4227|consen 210 ILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNG 289 (609)
T ss_pred EEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCc
Confidence 4454 77889999998742221000 00000 00 0111
Q ss_pred ----CceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-----------------------eEEEEEeecCCCEEEEEEcc
Q 023672 223 ----GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------------------ELLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 223 ----~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-----------------------~~~~~~~~~~~~v~~~~~sp 275 (279)
..+.+++|-. + .-+++|+.+-.|++|.+... +.+..+++|..-+..+.|+|
T Consensus 290 Y~N~~T~KS~~F~~-D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~ 367 (609)
T KOG4227|consen 290 YCNIKTIKSMTFID-D-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQ 367 (609)
T ss_pred ceeeeeeeeeeeec-c-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecC
Confidence 1244566654 3 34899999999999987421 13567899999999999998
Q ss_pred CC
Q 023672 276 SA 277 (279)
Q Consensus 276 dg 277 (279)
..
T Consensus 368 H~ 369 (609)
T KOG4227|consen 368 HN 369 (609)
T ss_pred Cc
Confidence 64
No 236
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.42 E-value=2.5e-10 Score=90.73 Aligned_cols=172 Identities=13% Similarity=0.064 Sum_probs=109.4
Q ss_pred EEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEEC
Q 023672 76 LTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDA 155 (279)
Q Consensus 76 ~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~ 155 (279)
++-..++.|.|.|..+.+.... ...+..+... +.++||++++++++.|+.|.++|+
T Consensus 10 V~~~~~~~v~viD~~t~~~~~~------------------i~~~~~~h~~------~~~s~Dgr~~yv~~rdg~vsviD~ 65 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATNKVVAR------------------IPTGGAPHAG------LKFSPDGRYLYVANRDGTVSVIDL 65 (369)
T ss_dssp EEEGGGTEEEEEETTT-SEEEE------------------EE-STTEEEE------EE-TT-SSEEEEEETTSEEEEEET
T ss_pred EEecCCCEEEEEECCCCeEEEE------------------EcCCCCceeE------EEecCCCCEEEEEcCCCeEEEEEC
Confidence 4556689999999987543221 1112222211 245899999999999999999999
Q ss_pred CCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC
Q 023672 156 TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT 233 (279)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~ 233 (279)
.+++.+..++... ...+++++++|++++++ ..+.+.++|.++ .++.+.+.............+.++..+|
T Consensus 66 ~~~~~v~~i~~G~------~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t-le~v~~I~~~~~~~~~~~~Rv~aIv~s~- 137 (369)
T PF02239_consen 66 ATGKVVATIKVGG------NPRGIAVSPDGKYVYVANYEPGTVSVIDAET-LEPVKTIPTGGMPVDGPESRVAAIVASP- 137 (369)
T ss_dssp TSSSEEEEEE-SS------EEEEEEE--TTTEEEEEEEETTEEEEEETTT---EEEEEE--EE-TTTS---EEEEEE-S-
T ss_pred CcccEEEEEecCC------CcceEEEcCCCCEEEEEecCCCceeEecccc-ccceeecccccccccccCCCceeEEecC-
Confidence 9999999988766 56789999999999954 789999999988 3434333222111112345678888888
Q ss_pred CCc-EEEEEeCCCcEEEEecCCCeEEE-EEeecCCCEEEEEEccCCCC
Q 023672 234 HTG-MLAIGSYSQTSAIYREDNMELLY-VLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 234 ~~~-~l~~~~~dg~i~~wd~~~~~~~~-~~~~~~~~v~~~~~spdg~~ 279 (279)
... ++++--+.+.|.+-|....+.+. ..........+..|+|+|||
T Consensus 138 ~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry 185 (369)
T PF02239_consen 138 GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRY 185 (369)
T ss_dssp SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSE
T ss_pred CCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccce
Confidence 555 66666666888888877655432 23334456789999999986
No 237
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.41 E-value=4.6e-11 Score=87.33 Aligned_cols=207 Identities=15% Similarity=0.219 Sum_probs=134.2
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc---CCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP---DGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSY 110 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 110 (279)
.+..|++...+.... .. ....-+..++.|.|.. +|. .++-+..+|.|.+|...............
T Consensus 47 kl~Lys~~d~~~~~l-~~--~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls-------- 115 (339)
T KOG0280|consen 47 KLHLYSLEDMKLSPL-DT--LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLS-------- 115 (339)
T ss_pred ceEEEeecccccCcc-ce--eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccc--------
Confidence 444555555544431 11 1122345577788864 555 56677788999999876432211111110
Q ss_pred cceeeecCCC--ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeE--EEeccCccccccceeeEEECCCC-
Q 023672 111 EASLVVTEGE--SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTG- 185 (279)
Q Consensus 111 ~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~- 185 (279)
...-. ...++ .+++.+..++++..+|.+.+-+........ ..+.|.- .++-..|+...
T Consensus 116 -----~~ki~~~~~lsl-------D~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~-----E~Wta~f~~~~p 178 (339)
T KOG0280|consen 116 -----SKKISVVEALSL-------DISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEF-----EAWTAKFSDKEP 178 (339)
T ss_pred -----hhhhhheeeeEE-------EeeccCceEEEEcCCCcEEEEecceeeeeecccccccce-----eeeeeecccCCC
Confidence 00001 12233 346677789999999999866655554433 6666665 77888888765
Q ss_pred CEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-CeEEEEEee
Q 023672 186 TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN-MELLYVLHG 263 (279)
Q Consensus 186 ~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~-~~~~~~~~~ 263 (279)
+++++| .|+.+..||+|.++. . +......|...|.++.-+|..+.++++|+.|-.|++||.|+ ++++..-.
T Consensus 179 nlvytGgDD~~l~~~D~R~p~~---~---i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~- 251 (339)
T KOG0280|consen 179 NLVYTGGDDGSLSCWDIRIPKT---F---IWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAK- 251 (339)
T ss_pred ceEEecCCCceEEEEEecCCcc---e---eeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCc-
Confidence 455576 999999999995431 1 12222578889999999987788999999999999999994 66765544
Q ss_pred cCCCEEEEEEccC
Q 023672 264 QEGGVTHVSKLSS 276 (279)
Q Consensus 264 ~~~~v~~~~~spd 276 (279)
-.++|+.+.++|.
T Consensus 252 v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 252 VGGGVWRIKHHPE 264 (339)
T ss_pred cccceEEEEecch
Confidence 3478999999884
No 238
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.1e-10 Score=95.66 Aligned_cols=139 Identities=14% Similarity=0.148 Sum_probs=92.3
Q ss_pred cCCCceEEEEeeCcccccCCCCcEEEEecC---CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-
Q 023672 117 TEGESVYDFCWFPHMSASDPTSCVFASTTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG- 191 (279)
Q Consensus 117 ~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~- 191 (279)
.+...+....| +|||+.|+..+. +..|.+||+.+++... +..... .+....|+|+|+.|+ +.
T Consensus 199 ~~~~~v~~p~w-------SpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~g-----~~~~~~~SPDG~~la~~~~ 265 (435)
T PRK05137 199 DGSSLVLTPRF-------SPNRQEITYMSYANGRPRVYLLDLETGQREL-VGNFPG-----MTFAPRFSPDGRKVVMSLS 265 (435)
T ss_pred cCCCCeEeeEE-------CCCCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCCC-----cccCcEECCCCCEEEEEEe
Confidence 34456777777 788998887753 4689999999886543 222222 556889999998876 43
Q ss_pred cCC--eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC--cEEEEecCCCeEEEEEeecCC
Q 023672 192 YNK--SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQEG 266 (279)
Q Consensus 192 ~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~ 266 (279)
.++ .|++||+.++ . . ..+ ..+........|+| ++..|+..+. +| .|+++|+.+++. ..+..+.+
T Consensus 266 ~~g~~~Iy~~d~~~~-~-~---~~L----t~~~~~~~~~~~sp-DG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~ 334 (435)
T PRK05137 266 QGGNTDIYTMDLRSG-T-T---TRL----TDSPAIDTSPSYSP-DGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGG 334 (435)
T ss_pred cCCCceEEEEECCCC-c-e---EEc----cCCCCccCceeEcC-CCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCC
Confidence 444 4777788763 1 1 122 23344566789999 7777766553 33 588888876654 34443455
Q ss_pred CEEEEEEccCCCC
Q 023672 267 GVTHVSKLSSAYT 279 (279)
Q Consensus 267 ~v~~~~~spdg~~ 279 (279)
.+....|||||++
T Consensus 335 ~~~~~~~SpdG~~ 347 (435)
T PRK05137 335 RYSTPVWSPRGDL 347 (435)
T ss_pred cccCeEECCCCCE
Confidence 6777899999974
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.39 E-value=1e-09 Score=87.23 Aligned_cols=189 Identities=14% Similarity=0.151 Sum_probs=116.9
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccccee
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASL 114 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (279)
.+.+.|..+.+.+. .+......-..+.|+|||+++++++.||.|.++|+.+.+....
T Consensus 17 ~v~viD~~t~~~~~------~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~----------------- 73 (369)
T PF02239_consen 17 SVAVIDGATNKVVA------RIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT----------------- 73 (369)
T ss_dssp EEEEEETTT-SEEE------EEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE-----------------
T ss_pred EEEEEECCCCeEEE------EEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEE-----------------
Confidence 46677888877665 3332223334578999999999999999999999997654221
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEec-CCCcEEEEECCCCeeeEEEeccCccc--cccceeeEEECCCCCEEE-E
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVD--EITAAFSVAFNPTGTKIF-A 190 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~-~ 190 (279)
..-+.... .++++++|++++++. .++.+.++|.++.+.++.+....... ....+..+..+|....++ +
T Consensus 74 -i~~G~~~~-------~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~ 145 (369)
T PF02239_consen 74 -IKVGGNPR-------GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVN 145 (369)
T ss_dssp -EE-SSEEE-------EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEE
T ss_pred -EecCCCcc-------eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEE
Confidence 12222333 345689999988775 68899999999999988887543211 222566788888887555 4
Q ss_pred e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEecCCCeEEEEEe
Q 023672 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
- ..+.|.+.|.... .+... ..+ ..........|+| +++++ ++...++.|-++|..+++.+..+.
T Consensus 146 lkd~~~I~vVdy~d~-~~~~~-~~i-----~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDP-KNLKV-TTI-----KVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp ETTTTEEEEEETTTS-SCEEE-EEE-----E--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred EccCCeEEEEEeccc-cccce-eee-----cccccccccccCc-ccceeeecccccceeEEEeeccceEEEEee
Confidence 4 5588988898764 22211 122 1233567889999 66655 445667789999999988776553
No 240
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=4.2e-10 Score=91.57 Aligned_cols=181 Identities=14% Similarity=0.082 Sum_probs=102.7
Q ss_pred CCceEEEEEccCCCeEEEeeC-----CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+.....+|+|||+.|+..+. |..+.+|++..+.... ...+........... ++
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~--------------~~~lt~~~~~~~~~p-------~w 288 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK--------------PRRLLNEAFGTQGNP-------SF 288 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCc--------------ceEeecCCCCCcCCe-------EE
Confidence 344567899999998886543 2234446665421000 000111111112233 44
Q ss_pred CCCCcEEEEec-CCCcEEEE--ECCC-CeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cC--CeEEEEEccCCCC
Q 023672 135 DPTSCVFASTT-RDHPIHLW--DATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YN--KSVRVFDVHRPGR 206 (279)
Q Consensus 135 ~~~~~~l~s~~-~d~~i~i~--d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d--~~i~~~d~~~~~~ 206 (279)
+|||+.|+..+ .++...+| ++.. +.....+..... .+....|+|||+.|+ ++ .+ ..|.+||+.++ .
T Consensus 289 SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-----~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g-~ 362 (428)
T PRK01029 289 SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-----NSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG-R 362 (428)
T ss_pred CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCC-----CccceeECCCCCEEEEEEcCCCCcEEEEEECCCC-C
Confidence 88999877665 45654555 4432 222333332222 456789999999887 44 32 47999999873 2
Q ss_pred ceeeeeecccccCCCCCceEEEEEccCCCcEEEE-EeC--CCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI-GSY--SQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~-~~~--dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
. . .+ ......+....|+| ++..|+. +.. ...|+++|+.+++..... ...+.+...+|+|-.
T Consensus 363 ~-~---~L----t~~~~~~~~p~wSp-DG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 363 D-Y---QL----TTSPENKESPSWAI-DSLHLVYSAGNSNESELYLISLITKKTRKIV-IGSGEKRFPSWGAFP 426 (428)
T ss_pred e-E---Ec----cCCCCCccceEECC-CCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCcccCceecCCC
Confidence 1 1 12 11123456789999 7766654 433 345888999877654333 345567889999854
No 241
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.37 E-value=2.7e-10 Score=84.26 Aligned_cols=175 Identities=19% Similarity=0.265 Sum_probs=115.2
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCc-cccccccccccCCCCcccce
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG-ISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~ 113 (279)
.+.+||-...+++. ...-...|.++.+.++ +|++.- .+.|.||...+.- ....
T Consensus 76 kviIWDD~k~~~i~-------el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~---------------- 129 (346)
T KOG2111|consen 76 KVIIWDDLKERCII-------ELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHV---------------- 129 (346)
T ss_pred eEEEEecccCcEEE-------EEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheee----------------
Confidence 57889855555443 2224567999999865 465555 5689999987431 1110
Q ss_pred eee-cCCCceEEEEeeCcccccCCCCcEEEE-ecCCCcEEEEECCCCee--eEEEeccCccccccceeeEEECCCCCEEE
Q 023672 114 LVV-TEGESVYDFCWFPHMSASDPTSCVFAS-TTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 114 ~~~-~~~~~v~~~~~~~~~~~~~~~~~~l~s-~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
+.. .....+.++ .| ..+..+||. |-.-|.|.|-|+...+. ...+..|.. .|.|++++-+|..+|
T Consensus 130 ~et~~NPkGlC~~--~~-----~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s-----~Iacv~Ln~~Gt~vA 197 (346)
T KOG2111|consen 130 IETRSNPKGLCSL--CP-----TSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDS-----DIACVALNLQGTLVA 197 (346)
T ss_pred eecccCCCceEee--cC-----CCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccC-----ceeEEEEcCCccEEE
Confidence 111 111112222 11 112233443 34568999999987654 366677776 899999999999999
Q ss_pred Ee-cCC-eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 190 AG-YNK-SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 190 ~~-~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
++ ..| -|||||..++ ..+.. +.. ......|.+++||| +..+|+++|+.|+++|+.++.
T Consensus 198 TaStkGTLIRIFdt~~g-~~l~E---~RR--G~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~ 257 (346)
T KOG2111|consen 198 TASTKGTLIRIFDTEDG-TLLQE---LRR--GVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRD 257 (346)
T ss_pred EeccCcEEEEEEEcCCC-cEeee---eec--CCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeec
Confidence 54 555 5899999995 33333 222 23345799999999 999999999999999998865
No 242
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.36 E-value=2.6e-09 Score=83.27 Aligned_cols=217 Identities=11% Similarity=0.096 Sum_probs=126.5
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeC----------CCeEEEEeCCCCcccccccccccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLA 104 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~ 104 (279)
.+.+.|..+.+.+... ..|.... .+ ++||++.|+++.. +..|.+||..+.+...+...
T Consensus 28 ~v~ViD~~~~~v~g~i-----~~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~---- 95 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMT-----DGGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIEL---- 95 (352)
T ss_pred eEEEEECCCCEEEEEE-----EccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEcc----
Confidence 4566677766655421 1222222 24 9999998876554 78999999998765433211
Q ss_pred CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec-C-CCcEEEEECCCCeeeEEEeccCccc-----------
Q 023672 105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT-R-DHPIHLWDATTGLLRCTYRAYDAVD----------- 171 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~----------- 171 (279)
.. .+-..+.-.|...+++|+|++++... . +..|.+.|+.+++.+..+.......
T Consensus 96 ------------p~-~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~ 162 (352)
T TIGR02658 96 ------------PE-GPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFM 162 (352)
T ss_pred ------------CC-CchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEE
Confidence 10 00001111233346688998888765 3 6788899998887766554332110
Q ss_pred -----c-c---------cceeeE--------------EECC-CCCEEEEecCCeEEEEEccCCCCce-eeeeecccc---
Q 023672 172 -----E-I---------TAAFSV--------------AFNP-TGTKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKGN--- 217 (279)
Q Consensus 172 -----~-~---------~~v~~~--------------~~~~-~~~~l~~~~d~~i~~~d~~~~~~~~-~~~~~~~~~--- 217 (279)
. . ...... .|.+ +|++++.+..|.|.+.|+....... ..+..+...
T Consensus 163 ~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR02658 163 HCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKA 242 (352)
T ss_pred EeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccc
Confidence 0 0 001111 2233 7888887766999999975422111 111111100
Q ss_pred cCCCCCceEEEEEccCCCcEEEE-Ee---------CCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 218 KEGQAGIMSAIAFSPTHTGMLAI-GS---------YSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 218 ~~~~~~~v~~~~~sp~~~~~l~~-~~---------~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
-.-..+.+.-++++| ++..++. .. ..+.|.++|..+++.+..+.. ...+.+++++|||+
T Consensus 243 ~~wrP~g~q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgk 311 (352)
T TIGR02658 243 DGWRPGGWQQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAK 311 (352)
T ss_pred cccCCCcceeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCC
Confidence 011233444599999 5555554 31 224799999999999988884 45789999999998
No 243
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.36 E-value=3.3e-12 Score=98.70 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=114.5
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (279)
..|..+.|-|..=+|++++..|.++--|+.+|+..... ... .+.+..+ ..+|-+..
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~----------------~t~-~G~~~vm-------~qNP~NaV 265 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI----------------RTG-AGRTDVM-------KQNPYNAV 265 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHH----------------Hcc-CCccchh-------hcCCccce
Confidence 34666667776666667777777777777766543221 111 1233333 33667778
Q ss_pred EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeecccccC
Q 023672 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (279)
Q Consensus 141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 219 (279)
+-.|...|+|.+|.....+++..+..|.. +|.++++.++|++++ +|.|..++|||++.- ..+.+.. .
T Consensus 266 ih~GhsnGtVSlWSP~skePLvKiLcH~g-----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~----~ql~t~~---t 333 (545)
T KOG1272|consen 266 IHLGHSNGTVSLWSPNSKEPLVKILCHRG-----PVSSIAVDRGGRYMATTGLDRKVKIWDLRNF----YQLHTYR---T 333 (545)
T ss_pred EEEcCCCceEEecCCCCcchHHHHHhcCC-----CcceEEECCCCcEEeecccccceeEeeeccc----cccceee---c
Confidence 99999999999999999999988888887 999999999999999 569999999999973 2222221 1
Q ss_pred CCCCceEEEEEccCCCcEEEEEeCCCcEEEEe-cCCCe----EEEEEeecCCCEEEEEEcc
Q 023672 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNME----LLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd-~~~~~----~~~~~~~~~~~v~~~~~sp 275 (279)
..+...+++|. .| +++.+....+.||. .-.+. ..+--....++|.++.|.|
T Consensus 334 --p~~a~~ls~Sq-kg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP 389 (545)
T KOG1272|consen 334 --PHPASNLSLSQ-KG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCP 389 (545)
T ss_pred --CCCcccccccc-cc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceecc
Confidence 23566788887 44 33444556799994 22211 1111111234677777776
No 244
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.33 E-value=5.4e-10 Score=91.71 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=102.6
Q ss_pred CCceEEEEEccCCCeEE-EeeCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672 60 NNFLKGIKWSPDGSSFL-TSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~-t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (279)
.+.+...+|+|||+.|+ +.+.+| .|.+||+.++.... + ..+........ |+|
T Consensus 242 ~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-----------------l-t~~~~~~~~~~-------~sp 296 (430)
T PRK00178 242 EGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-----------------V-TNHPAIDTEPF-------WGK 296 (430)
T ss_pred CCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-----------------c-ccCCCCcCCeE-------ECC
Confidence 34456789999999887 445555 57788887654311 0 01111222233 478
Q ss_pred CCcEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCCCcee
Q 023672 137 TSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFE 209 (279)
Q Consensus 137 ~~~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~~~~~ 209 (279)
+++.|+..+. ++ .|.++|+.+++..... .... ......|+|+|+.++ +. .++ .|.++|+.++ . ..
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~-----~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg-~-~~ 368 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGN-----YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG-S-VR 368 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCC-----CccceEECCCCCEEEEEEccCCceEEEEEECCCC-C-EE
Confidence 8887766553 33 5777888877643322 1111 234578999999988 44 333 5888898763 1 11
Q ss_pred eeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CC--cEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQ--TSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg--~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
. +.. . .......|+| +|..++..+. ++ .|.++++. +.....+..+.+.+...+|+|-
T Consensus 369 ~---lt~---~--~~~~~p~~sp-dg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 369 I---LTD---T--SLDESPSVAP-NGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred E---ccC---C--CCCCCceECC-CCCEEEEEEecCCceEEEEEECC-CCceEECcCCCCCcCCCccCCC
Confidence 1 211 1 1122458999 7776665554 33 46677764 4444556656667888889873
No 245
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.32 E-value=5.6e-09 Score=78.89 Aligned_cols=199 Identities=17% Similarity=0.184 Sum_probs=125.8
Q ss_pred EEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCC--ceEEEEeeCcccccCCCCcE
Q 023672 64 KGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE--SVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 64 ~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~ 140 (279)
+-+++++++++|+++.. -|.|.++-+.+.......... ..+.+. ....-.-++++..+.|++++
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~-------------~~h~g~~p~~rQ~~~h~H~a~~tP~~~~ 158 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQV-------------VKHTGSGPHERQESPHVHSANFTPDGRY 158 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccccceee-------------eecCCCCCCccccCCccceeeeCCCCCE
Confidence 77999999999998876 588999999763322111000 000000 01111222344567999999
Q ss_pred EEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeec---
Q 023672 141 FASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTL--- 214 (279)
Q Consensus 141 l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~--- 214 (279)
|++.+. -..|.+|++..|+....-...- ........|.|+|++++.+ +. .+++|-+|........++.++.+
T Consensus 159 l~v~DLG~Dri~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tl 236 (346)
T COG2706 159 LVVPDLGTDRIFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTL 236 (346)
T ss_pred EEEeecCCceEEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccC
Confidence 988854 2368999999876543322211 1112678999999999988 56 89999999998754555554443
Q ss_pred ccccCCCCCceEEEEEccCCCcEEEEEeC-CCcEEEEecCC--CeE--EEEEeecCCCEEEEEEccCCCC
Q 023672 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYREDN--MEL--LYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~i~~wd~~~--~~~--~~~~~~~~~~v~~~~~spdg~~ 279 (279)
...+.+ ......+..+| +|++|.++.. ...|.+|.+.. +++ +.....+....++..|+|+|++
T Consensus 237 P~dF~g-~~~~aaIhis~-dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~ 304 (346)
T COG2706 237 PEDFTG-TNWAAAIHISP-DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRF 304 (346)
T ss_pred ccccCC-CCceeEEEECC-CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCE
Confidence 333333 34567889999 8988887743 33578887753 332 2222233345788999998874
No 246
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.32 E-value=9.6e-12 Score=102.73 Aligned_cols=207 Identities=17% Similarity=0.258 Sum_probs=131.4
Q ss_pred HHhcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccccc
Q 023672 25 AQENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLA 104 (279)
Q Consensus 25 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~ 104 (279)
...+.+++..-+++|.++.+.++. .+.||+++|++++|+|-. +.+.||++++||.+=....... -...
T Consensus 245 ~~iaaaS~D~vIrvWrl~~~~pvs------vLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~p--rp~~ 312 (1113)
T KOG0644|consen 245 TMIAAASNDKVIRVWRLPDGAPVS------VLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVP--RPLK 312 (1113)
T ss_pred hhhhhcccCceEEEEecCCCchHH------HHhccccceeeeccCccc----cCCCCCceEeccccccccccCC--CCCC
Confidence 344556666678999999999987 799999999999999954 7888999999998711110000 0000
Q ss_pred CCCCcccceeeec---------------CCCceEEEEeeCccccc---CCC-CcEEEEecCCCcEEEEECCCCeeeEEEe
Q 023672 105 KDQDSYEASLVVT---------------EGESVYDFCWFPHMSAS---DPT-SCVFASTTRDHPIHLWDATTGLLRCTYR 165 (279)
Q Consensus 105 ~~~~~~~~~~~~~---------------~~~~v~~~~~~~~~~~~---~~~-~~~l~s~~~d~~i~i~d~~~~~~~~~~~ 165 (279)
...+..+..+.+. .......+.|.-..+-| +.+ ..+.+++-.+..+.+|++.+|.....+.
T Consensus 313 ~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ 392 (1113)
T KOG0644|consen 313 FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM 392 (1113)
T ss_pred cccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc
Confidence 0000000000000 00011111111110000 101 1244444556678899999998888888
Q ss_pred ccCccccccceeeEEECCCCCEEE--EecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC
Q 023672 166 AYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY 243 (279)
Q Consensus 166 ~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~ 243 (279)
.+.. .++.+.++|-+..++ +|.||...|||+-. +.+.+... .+| +.+...+||+ +|+.++....
T Consensus 393 ghsd-----~~yvLd~Hpfn~ri~msag~dgst~iwdi~e-g~pik~y~------~gh-~kl~d~kFSq-dgts~~lsd~ 458 (1113)
T KOG0644|consen 393 GHSD-----EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWE-GIPIKHYF------IGH-GKLVDGKFSQ-DGTSIALSDD 458 (1113)
T ss_pred cccc-----ceeeeeecCCCcHhhhhccCCCceEeeeccc-CCcceeee------ccc-ceeeccccCC-CCceEecCCC
Confidence 7776 889999999887777 56999999999987 34433332 243 4566789999 8888888888
Q ss_pred CCcEEEEecCCCeE
Q 023672 244 SQTSAIYREDNMEL 257 (279)
Q Consensus 244 dg~i~~wd~~~~~~ 257 (279)
-|.++|.....++.
T Consensus 459 hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 459 HGQLYILGTGQSKS 472 (1113)
T ss_pred CCceEEeccCCCcc
Confidence 88888887655543
No 247
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.31 E-value=5e-11 Score=90.61 Aligned_cols=164 Identities=15% Similarity=0.111 Sum_probs=103.7
Q ss_pred eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (279)
+..+..++.+++||++..+....++++....... +. ..+.++.-.|..+.+-.+...+.
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~------------kl---------~~~~~v~~~~~ai~~~~~~~sv~ 123 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGA------------KL---------LDVSCVPKRPTAISFIREDTSVL 123 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcc------------ee---------eeEeecccCcceeeeeeccceEE
Confidence 4455677888888888888777777776432100 00 01122222222222222333333
Q ss_pred Ee---cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccccc
Q 023672 143 ST---TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (279)
Q Consensus 143 s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~ 218 (279)
.+ +....+.+|....+.+... .++...++.++|+||+++|+++ .|..|++-..... ..+..-.
T Consensus 124 v~dkagD~~~~di~s~~~~~~~~~------lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~-------f~Iesfc 190 (390)
T KOG3914|consen 124 VADKAGDVYSFDILSADSGRCEPI------LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPAT-------FVIESFC 190 (390)
T ss_pred EEeecCCceeeeeecccccCcchh------hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcc-------cchhhhc
Confidence 33 3334455555544333222 2333489999999999999977 9999999877542 1222222
Q ss_pred CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
-||...|..++.-+ + +.|++|+.|++|++||+++|+++.++.
T Consensus 191 lGH~eFVS~isl~~-~-~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 191 LGHKEFVSTISLTD-N-YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred cccHhheeeeeecc-C-ceeeecCCCCcEEEEecccCCcccccc
Confidence 58999999999987 4 568999999999999999999886664
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=7.8e-10 Score=90.70 Aligned_cols=171 Identities=13% Similarity=0.189 Sum_probs=100.4
Q ss_pred ceEEEEEccCCCeEEE-eeCCCe--EEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 62 FLKGIKWSPDGSSFLT-SSEDKT--LRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
.....+|+|||+.|+. .+.+|. |.++|+.++.... +. .+........| +|++
T Consensus 263 ~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~-----------------lt-~~~~~~~~p~w-------SpDG 317 (448)
T PRK04792 263 INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTR-----------------IT-RHRAIDTEPSW-------HPDG 317 (448)
T ss_pred CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEE-----------------Cc-cCCCCccceEE-------CCCC
Confidence 3457899999998864 566675 6667776543211 11 11112233344 7888
Q ss_pred cEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCCCceeee
Q 023672 139 CVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 139 ~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~~~~~~~ 211 (279)
+.|+..+. ++ .|.++|+.+++.... ..... .....+|+|+|+.++ ++ .++ .|.++|+.++ . ...
T Consensus 318 ~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~-----~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g-~-~~~- 388 (448)
T PRK04792 318 KSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGE-----QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG-A-MQV- 388 (448)
T ss_pred CEEEEEECCCCCceEEEEECCCCCEEEE-ecCCC-----CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC-C-eEE-
Confidence 88776553 33 477778877765432 22221 223578999999887 44 444 4555677653 1 121
Q ss_pred eecccccCCCCCceEEEEEccCCCcEEEEEe-CCCc--EEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQT--SAIYREDNMELLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~sp 275 (279)
+. .. .......|+| ++..|+..+ .++. +++++. ++.....+..+.+.+...+|+|
T Consensus 389 --lt---~~--~~d~~ps~sp-dG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 --LT---ST--RLDESPSVAP-NGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred --cc---CC--CCCCCceECC-CCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCCCcCCCccCC
Confidence 11 11 1112447999 666655544 4443 677776 5666677776667788899998
No 249
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.29 E-value=1.6e-11 Score=90.56 Aligned_cols=214 Identities=12% Similarity=0.196 Sum_probs=134.6
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccccccccc-ccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACS-LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
.+.|+++.|...|.+|++|...|.|.+|.-+...- .+..-.. +......+.......-.+.|..+.|.-. ...
T Consensus 26 ad~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~-ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~-----t~r 99 (460)
T COG5170 26 ADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG-CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDD-----TGR 99 (460)
T ss_pred cceeeEEEeccccceEeecCCCceEEEeecccccc-cchhhhhhhcccccchhhhhhccHHHHhhheeeecC-----CCc
Confidence 45699999999999999999999999998765431 0110000 0000111111112222346777777321 123
Q ss_pred cEEEEecCCCcEEEEECCCCeeeE---------------------------EEeccC-----------ccccccceeeEE
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRC---------------------------TYRAYD-----------AVDEITAAFSVA 180 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~---------------------------~~~~~~-----------~~~~~~~v~~~~ 180 (279)
..++..+.|.+|++|.+....... .+..|. ...+..-+.+++
T Consensus 100 ~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS 179 (460)
T COG5170 100 NHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSIS 179 (460)
T ss_pred ceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeee
Confidence 356667789999999986431100 000000 012333577899
Q ss_pred ECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE---
Q 023672 181 FNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL--- 257 (279)
Q Consensus 181 ~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~--- 257 (279)
|+.|...++++.|-.|.+|++......+..+-.-+..+..-..-|++..|+|.....+...+..|.|++-|+|...+
T Consensus 180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 99998888888999999999987666555543333333333456899999997677788888899999999984321
Q ss_pred ---EE--EE--------eecCCCEEEEEEccCCCC
Q 023672 258 ---LY--VL--------HGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 258 ---~~--~~--------~~~~~~v~~~~~spdg~~ 279 (279)
+. .+ .+-...|..+.|+|+|||
T Consensus 260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngry 294 (460)
T COG5170 260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRY 294 (460)
T ss_pred chhhhhhccCcccchhHHHHhhhhcceEEcCCCcE
Confidence 11 11 112247889999999986
No 250
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=9.2e-10 Score=90.12 Aligned_cols=190 Identities=17% Similarity=0.163 Sum_probs=110.1
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCC--eEEEEeCCCCccccccccccccCCCCccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
.+++||+.+++.. .+..+.+.+.+++|+|||+.|+ +.+.++ .|.+||+.++....
T Consensus 215 ~i~v~d~~~g~~~-------~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~--------------- 272 (417)
T TIGR02800 215 EIYVQDLATGQRE-------KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR--------------- 272 (417)
T ss_pred EEEEEECCCCCEE-------EeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE---------------
Confidence 4566776665432 2233456677899999999776 444444 58888887653211
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (279)
+ ..+........ ++|+++.|+.++. ++ .|.++|+.+++... +..... .+....|+|+++++
T Consensus 273 --l-~~~~~~~~~~~-------~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~-l~~~~~-----~~~~~~~spdg~~i 336 (417)
T TIGR02800 273 --L-TNGPGIDTEPS-------WSPDGKSIAFTSDRGGSPQIYMMDADGGEVRR-LTFRGG-----YNASPSWSPDGDLI 336 (417)
T ss_pred --C-CCCCCCCCCEE-------ECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCC-----CccCeEECCCCCEE
Confidence 0 01111122233 4778888776654 33 57888888766433 332222 45678999999988
Q ss_pred EE-ecCC---eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC---cEEEEecCCCeEEEEE
Q 023672 189 FA-GYNK---SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ---TSAIYREDNMELLYVL 261 (279)
Q Consensus 189 ~~-~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg---~i~~wd~~~~~~~~~~ 261 (279)
+. ..++ .|.+||+.++ . .. .+. . ........|+| ++..|+..+.++ .+++.+. ++.....+
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~-~-~~---~l~----~-~~~~~~p~~sp-dg~~l~~~~~~~~~~~l~~~~~-~g~~~~~~ 404 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGG-G-ER---VLT----D-TGLDESPSFAP-NGRMILYATTRGGRGVLGLVST-DGRFRARL 404 (417)
T ss_pred EEEEccCCceEEEEEeCCCC-C-eE---Ecc----C-CCCCCCceECC-CCCEEEEEEeCCCcEEEEEEEC-CCceeeEC
Confidence 84 4443 7888888762 1 11 111 1 11234568999 777666665543 3555553 45555566
Q ss_pred eecCCCEEEEEEc
Q 023672 262 HGQEGGVTHVSKL 274 (279)
Q Consensus 262 ~~~~~~v~~~~~s 274 (279)
..+.+.+..++|+
T Consensus 405 ~~~~g~~~~~~ws 417 (417)
T TIGR02800 405 PLGNGDVREPAWS 417 (417)
T ss_pred CCCCCCcCCCCCC
Confidence 5555566666664
No 251
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.27 E-value=1.9e-09 Score=84.21 Aligned_cols=169 Identities=12% Similarity=0.098 Sum_probs=119.7
Q ss_pred Ecc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC
Q 023672 68 WSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR 146 (279)
Q Consensus 68 ~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 146 (279)
|++ +|.+++..|+ |...|.+...+.. +...+...|.-..+ ..++.-++.|..
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~~~~~~-------------------iqv~~~~~VrY~r~-------~~~~e~~vigt~ 379 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRPWDGYS-------------------IQVGKKGGVRYRRI-------QVDPEGDVIGTN 379 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECCCCCee-------------------EEcCCCCceEEEEE-------ccCCcceEEecc
Confidence 444 7888888886 5666666554322 44445445544433 345557888888
Q ss_pred CC-cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCc
Q 023672 147 DH-PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (279)
Q Consensus 147 d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (279)
|| .+-++|.++++.......-. .|.++..+|+|++++++ ....+.++|+.++.. ..+. ....+-
T Consensus 380 dgD~l~iyd~~~~e~kr~e~~lg------~I~av~vs~dGK~~vvaNdr~el~vididngnv-----~~id---kS~~~l 445 (668)
T COG4946 380 DGDKLGIYDKDGGEVKRIEKDLG------NIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-----RLID---KSEYGL 445 (668)
T ss_pred CCceEEEEecCCceEEEeeCCcc------ceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-----eEec---ccccce
Confidence 88 89999999988665554433 78899999999999988 678899999998421 1111 233567
Q ss_pred eEEEEEccCCCcEEEEEeCCC----cEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 225 MSAIAFSPTHTGMLAIGSYSQ----TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 225 v~~~~~sp~~~~~l~~~~~dg----~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
|+.+.|+| ++.++|-+--+| .|+++|+.+++...... ..+.=.+-+|.|||+|
T Consensus 446 Itdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ry 502 (668)
T COG4946 446 ITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRY 502 (668)
T ss_pred eEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcE
Confidence 99999999 999999887666 59999998887654333 3333356789999986
No 252
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.27 E-value=9.6e-10 Score=94.76 Aligned_cols=206 Identities=12% Similarity=0.085 Sum_probs=130.6
Q ss_pred eeeEecCCCCccc-ceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccce
Q 023672 35 PLIRFDVPPHRTY-HFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEAS 113 (279)
Q Consensus 35 ~~~~~d~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (279)
-+++|+.....-- ...+...+...-...+.++...+.+..+|+++.||.|.+.+++............. .
T Consensus 1072 tVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~r---------i 1142 (1431)
T KOG1240|consen 1072 TVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVR---------I 1142 (1431)
T ss_pred eEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeee---------c
Confidence 5677876543322 22333334443567899999999999999999999999999985311111111100 0
Q ss_pred eeecCCCceEEE-EeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672 114 LVVTEGESVYDF-CWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG- 191 (279)
Q Consensus 114 ~~~~~~~~v~~~-~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 191 (279)
......+.+.++ ++. .......++.+..-+.|..||++.......++..... +.|++++.+|.+.+++.|
T Consensus 1143 ~n~~~~g~vv~m~a~~-----~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h---G~vTSi~idp~~~WlviGt 1214 (1431)
T KOG1240|consen 1143 PNLKKDGVVVSMHAFT-----AIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH---GLVTSIVIDPWCNWLVIGT 1214 (1431)
T ss_pred ccccCCCceEEeeccc-----ccccceeEEEEEeccceEEecchhhhhHHhhhcCccc---cceeEEEecCCceEEEEec
Confidence 111122223222 221 1111236777888889999999987766665543322 278999999999999988
Q ss_pred cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCC--cEEEEEe--CCCcEEEEecCCCeEEEEEeec
Q 023672 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHT--GMLAIGS--YSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~--~~l~~~~--~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
..|.+.+||+|-+ .+. .... ..+..++..++.+|.-+ ...++++ ..+.|.+|++.+|.+..++-..
T Consensus 1215 s~G~l~lWDLRF~-~~i---~sw~---~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s 1284 (1431)
T KOG1240|consen 1215 SRGQLVLWDLRFR-VPI---LSWE---HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS 1284 (1431)
T ss_pred CCceEEEEEeecC-cee---eccc---CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC
Confidence 8999999999963 221 1221 24446777777776433 4555544 4677999999999877776543
No 253
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.27 E-value=1.3e-11 Score=97.94 Aligned_cols=183 Identities=21% Similarity=0.251 Sum_probs=123.8
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+.||...|..++--.+.+.+++++.|.+|++|.+....-......|. .....|..+|.++.|
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ----------fTY~aHkk~i~~igf------- 792 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ----------FTYQAHKKPIHDIGF------- 792 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceee----------eEhhhccCcccceee-------
Confidence 678999999998877777889999999999999997543222222222 244567788888877
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~ 212 (279)
-.+-++++++ |+-|.+||.--++++..+......+....|.++. +-+...+.+| ...+|+++|-+..+...+. .
T Consensus 793 L~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~-k 868 (1034)
T KOG4190|consen 793 LADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCEL-K 868 (1034)
T ss_pred eeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeE-E
Confidence 3455566654 8899999998887766544333222222333331 1123344433 7789999999974321111 1
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 261 (279)
. ....+....+.+++..| .|++++.+-.+|.|.+.|.++|+.+..+
T Consensus 869 V--cna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINsw 914 (1034)
T KOG4190|consen 869 V--CNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSW 914 (1034)
T ss_pred e--ccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccC
Confidence 1 11134456788999999 9999999999999999999999877644
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.27 E-value=1.2e-10 Score=98.41 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=113.9
Q ss_pred EEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC
Q 023672 67 KWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR 146 (279)
Q Consensus 67 ~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~ 146 (279)
.++++.-++++|+.-+.|.+|+...... .....+|.+.+..+.| +.+|+++++.|.
T Consensus 140 g~s~~~~~i~~gsv~~~iivW~~~~dn~-----------------p~~l~GHeG~iF~i~~-------s~dg~~i~s~Sd 195 (967)
T KOG0974|consen 140 GDSAEELYIASGSVFGEIIVWKPHEDNK-----------------PIRLKGHEGSIFSIVT-------SLDGRYIASVSD 195 (967)
T ss_pred eccCcEEEEEeccccccEEEEeccccCC-----------------cceecccCCceEEEEE-------ccCCcEEEEEec
Confidence 3466667899999999999999872211 0134567778888877 779999999999
Q ss_pred CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCC-Cce
Q 023672 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQA-GIM 225 (279)
Q Consensus 147 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~v 225 (279)
|.++++|++++++... ....++...|+.+.|+|+ ..+.+|.|-+.++|+... ..+..+ .+|. ..+
T Consensus 196 DRsiRlW~i~s~~~~~----~~~fgHsaRvw~~~~~~n-~i~t~gedctcrvW~~~~-----~~l~~y----~~h~g~~i 261 (967)
T KOG0974|consen 196 DRSIRLWPIDSREVLG----CTGFGHSARVWACCFLPN-RIITVGEDCTCRVWGVNG-----TQLEVY----DEHSGKGI 261 (967)
T ss_pred CcceeeeecccccccC----cccccccceeEEEEeccc-eeEEeccceEEEEEeccc-----ceehhh----hhhhhcce
Confidence 9999999999987665 222333348999999998 333467999999997764 222233 4443 468
Q ss_pred EEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 226 SAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 226 ~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
..++..+ +..+++|++.|+.+++||+..
T Consensus 262 w~~~~~~-~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 262 WKIAVPI-GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEcC-CceEEEeeccCcchhhhhhhc
Confidence 8999999 899999999999999999854
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.27 E-value=5.8e-09 Score=82.89 Aligned_cols=193 Identities=16% Similarity=0.211 Sum_probs=116.7
Q ss_pred ceEEEEEccCCCeEEEeeC----CCeEEEEeCCCC-ccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672 62 FLKGIKWSPDGSSFLTSSE----DKTLRIFSLPEN-GISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~~----dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (279)
.-..++++|++++|+++.. ++.|..|++... ...... ..... .+. .|..++++|
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~-------------~~~~~-~g~-------~p~~i~~~~ 96 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLL-------------NSVPS-GGS-------SPCHIAVDP 96 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEE-------------EEEEE-SSS-------CEEEEEECT
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEe-------------eeecc-CCC-------CcEEEEEec
Confidence 3566889999999988876 578999988753 110000 00110 122 222345689
Q ss_pred CCcEEEEec-CCCcEEEEECCC-CeeeEEEec--c------CccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCC
Q 023672 137 TSCVFASTT-RDHPIHLWDATT-GLLRCTYRA--Y------DAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRP 204 (279)
Q Consensus 137 ~~~~l~s~~-~d~~i~i~d~~~-~~~~~~~~~--~------~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~ 204 (279)
++++|+++. .+|.|.++++.. +........ + ........+.++.|+|+++++++. ....|.+|++...
T Consensus 97 ~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~ 176 (345)
T PF10282_consen 97 DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDD 176 (345)
T ss_dssp TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TT
T ss_pred CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCC
Confidence 999988886 488999999987 443332111 1 001112256789999999998854 6678999999875
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEE-EEEeCCCcEEEEecC--CCe--EEEEEeec------CCCEEEEEE
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AIGSYSQTSAIYRED--NME--LLYVLHGQ------EGGVTHVSK 273 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~~~~dg~i~~wd~~--~~~--~~~~~~~~------~~~v~~~~~ 273 (279)
...+.....+. .........++|+| ++.++ ++.-.++.|.++++. ++. .+..+... ......|++
T Consensus 177 ~~~l~~~~~~~---~~~G~GPRh~~f~p-dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~i 252 (345)
T PF10282_consen 177 TGKLTPVDSIK---VPPGSGPRHLAFSP-DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAI 252 (345)
T ss_dssp S-TEEEEEEEE---CSTTSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE
T ss_pred CceEEEeeccc---cccCCCCcEEEEcC-CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEE
Confidence 43333322221 23345688999999 66655 455567889999988 443 33333321 125789999
Q ss_pred ccCCCC
Q 023672 274 LSSAYT 279 (279)
Q Consensus 274 spdg~~ 279 (279)
+|||+|
T Consensus 253 spdg~~ 258 (345)
T PF10282_consen 253 SPDGRF 258 (345)
T ss_dssp -TTSSE
T ss_pred ecCCCE
Confidence 999985
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=4.6e-10 Score=94.93 Aligned_cols=180 Identities=14% Similarity=0.157 Sum_probs=125.4
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (279)
+.|....+..+...++.++.+..+.+||...+.......... ....++..- .-++++.-+
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~e----------------r~~l~~~~~----~g~s~~~~~ 147 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDE----------------RCTLYSSLI----IGDSAEELY 147 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCc----------------eEEEEeEEE----EeccCcEEE
Confidence 445555555666778888888999999998654432211111 001111111 134677789
Q ss_pred EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCceeeeeecccccC
Q 023672 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (279)
Q Consensus 141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 219 (279)
+++|+.-+.|.+|+....+....+.+|.. .|.++.|+-+|+++++ +.|.++++|++.+..... ..--
T Consensus 148 i~~gsv~~~iivW~~~~dn~p~~l~GHeG-----~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~-------~~~f 215 (967)
T KOG0974|consen 148 IASGSVFGEIIVWKPHEDNKPIRLKGHEG-----SIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG-------CTGF 215 (967)
T ss_pred EEeccccccEEEEeccccCCcceecccCC-----ceEEEEEccCCcEEEEEecCcceeeeecccccccC-------cccc
Confidence 99999999999999873333234556665 8999999999999994 599999999999842211 2225
Q ss_pred CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC-CEEEEEEccC
Q 023672 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG-GVTHVSKLSS 276 (279)
Q Consensus 220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~spd 276 (279)
+|+..|..++|.| + .++++++|.+.++|+. ++..+..+.+|.+ .++.++..++
T Consensus 216 gHsaRvw~~~~~~-n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 216 GHSARVWACCFLP-N--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIG 269 (967)
T ss_pred cccceeEEEEecc-c--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcCC
Confidence 9999999999999 6 8999999999999965 3444556776654 5666666553
No 257
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.1e-10 Score=90.96 Aligned_cols=243 Identities=15% Similarity=0.153 Sum_probs=144.7
Q ss_pred hcccceeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEcc--CCCeEEEeeCCCeEEEEeCCCCccccccc-----
Q 023672 27 ENQQEYTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSP--DGSSFLTSSEDKTLRIFSLPENGISYDVN----- 99 (279)
Q Consensus 27 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~~~dg~i~iwd~~~~~~~~~~~----- 99 (279)
...+.....+.+||......... ...||...|....|-| +.+-+++++.||.|++=.+...+......
T Consensus 157 l~SgSDD~~vv~WdW~~~~~~l~-----f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h 231 (559)
T KOG1334|consen 157 LASGSDDLQVVVWDWVSGSPKLS-----FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPH 231 (559)
T ss_pred eeccCccceEEeehhhccCcccc-----cccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecccc
Confidence 34445566888999888776542 6778999999999988 45679999999999988775443321110
Q ss_pred -----cc---------cccCCCCcccceeeecCCCceEEEE---eeCc------ccccCCCC-cEEEEecCCCcEEEEEC
Q 023672 100 -----AC---------SLAKDQDSYEASLVVTEGESVYDFC---WFPH------MSASDPTS-CVFASTTRDHPIHLWDA 155 (279)
Q Consensus 100 -----~~---------~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~------~~~~~~~~-~~l~s~~~d~~i~i~d~ 155 (279)
.. ....+.+..+..+......+...+. -... .++.+|.. ..+++++.|..+++||.
T Consensus 232 ~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~ 311 (559)
T KOG1334|consen 232 EGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQ 311 (559)
T ss_pred cCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcc
Confidence 00 0001122222222222222211111 0001 23344433 36888888888888888
Q ss_pred CCCee------eEEEeccCc-cccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCC--ceee---eeecccccCCCC
Q 023672 156 TTGLL------RCTYRAYDA-VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR--DFEK---YSTLKGNKEGQA 222 (279)
Q Consensus 156 ~~~~~------~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~--~~~~---~~~~~~~~~~~~ 222 (279)
+.-.. +..+..+.. ......|++++|+.++.-++++ .|-.|+++.-..+.- +... -...+..+++|.
T Consensus 312 R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHr 391 (559)
T KOG1334|consen 312 RRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHR 391 (559)
T ss_pred cchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccc
Confidence 75321 122222111 1223378999999777666655 899999995443211 1000 011222246775
Q ss_pred C--ceEEEEE-ccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672 223 G--IMSAIAF-SPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 223 ~--~v~~~~~-sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp 275 (279)
. .|..+-| -| ...++++|+.-|.|.||+-.+++.+..+.+-..-|+||.=||
T Consensus 392 N~~TVKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 392 NSRTVKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred cccccceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 4 4667766 57 889999999999999999999887777666555666665554
No 258
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.19 E-value=3.1e-09 Score=77.11 Aligned_cols=181 Identities=12% Similarity=0.057 Sum_probs=114.7
Q ss_pred EEEEEcc-----CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 64 KGIKWSP-----DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 64 ~~~~~~~-----~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
..|.|.| ..-+||.|+.-|...+|...+...... .| . .+...|.-+.- .....
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~--~c-------------d-~snn~v~~~~r------~cd~~ 128 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLY--QC-------------D-VSNNDVTLVKR------YCDLK 128 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCccccee--ee-------------c-ccccchhhhhh------hcccc
Confidence 3455655 345899999999999999986432110 00 0 01111110000 00011
Q ss_pred cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeecccc
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 217 (279)
.-+..++.|.++++.++.-+..........- .+.++++++++++++ +|....|..|.+...+.-.... ..
T Consensus 129 ~~~~i~sndht~k~~~~~~~s~~~~~h~~~~-----~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~-~~--- 199 (344)
T KOG4532|consen 129 FPLNIASNDHTGKTMVVSGDSNKFAVHNQNL-----TQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENI-YE--- 199 (344)
T ss_pred cceeeccCCcceeEEEEecCcccceeecccc-----ceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeee-Ee---
Confidence 2456678888888888875544333332221 367899999999999 5688999999998743322221 11
Q ss_pred cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE-----EEEeecCCCEEEEEEccCC
Q 023672 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-----YVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~-----~~~~~~~~~v~~~~~spdg 277 (279)
....+.-.+..|+. +...+|++..||++.|||+|..... .+-+.|.+.++.+.|+|-|
T Consensus 200 -a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 200 -APTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred -cccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence 12233345778999 8889999999999999999875421 2334588999999999865
No 259
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.5e-08 Score=80.59 Aligned_cols=182 Identities=16% Similarity=0.246 Sum_probs=116.0
Q ss_pred CCCceEEEEEccCCC--eEEE-----eeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 59 PNNFLKGIKWSPDGS--SFLT-----SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 59 h~~~v~~~~~~~~~~--~l~t-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
|...|+.+.++|.+. .+|+ .+.=+.|+||...............+ ... .-..+.|++..
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksF-------------Fka-dkvqm~WN~~g 229 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSF-------------FKA-DKVQMKWNKLG 229 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccc-------------ccc-ceeEEEeccCC
Confidence 567799999998643 4543 45567899998874333222111111 111 11233443221
Q ss_pred cccCCCCc-EEEEecCC---------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--Ee-cCCeEEE
Q 023672 132 SASDPTSC-VFASTTRD---------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG-YNKSVRV 198 (279)
Q Consensus 132 ~~~~~~~~-~l~s~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~-~d~~i~~ 198 (279)
. +- .|++...| .+++++++........+...+ +|.++.|+|+++.++ -| .-..+.+
T Consensus 230 t-----~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~G------PVhdv~W~~s~~EF~VvyGfMPAkvti 298 (566)
T KOG2315|consen 230 T-----ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEG------PVHDVTWSPSGREFAVVYGFMPAKVTI 298 (566)
T ss_pred c-----eEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCC------CceEEEECCCCCEEEEEEecccceEEE
Confidence 0 11 12222223 368888887444444443333 999999999998777 36 7789999
Q ss_pred EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC---CCcEEEEecCCCeEEEEEeecCCCEEEEEEcc
Q 023672 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQTSAIYREDNMELLYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~---dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~sp 275 (279)
||++. ..+..+ ..++-+++-|+| .|++|+.++- -|.|-|||+.+.+++..+.... -+-..|+|
T Consensus 299 fnlr~-----~~v~df------~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~P 364 (566)
T KOG2315|consen 299 FNLRG-----KPVFDF------PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSP 364 (566)
T ss_pred EcCCC-----CEeEeC------CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcC
Confidence 99996 222222 245667889999 8888887765 4679999999999988887644 45688999
Q ss_pred CCCC
Q 023672 276 SAYT 279 (279)
Q Consensus 276 dg~~ 279 (279)
||+|
T Consensus 365 dGe~ 368 (566)
T KOG2315|consen 365 DGEY 368 (566)
T ss_pred CCcE
Confidence 9986
No 260
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.16 E-value=3.2e-10 Score=84.78 Aligned_cols=175 Identities=14% Similarity=0.181 Sum_probs=105.1
Q ss_pred eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
.+..+.+|.+.|.+++|.|....|.+|..|..+.+||+..... .......+...|..+++
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g----------------~~~el~gh~~kV~~l~~---- 248 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG----------------TAYELQGHNDKVQALSY---- 248 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc----------------eeeeeccchhhhhhhhh----
Confidence 3347889999999999999999999999999999999974322 11123445556666655
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCCeeeEE-E----------------------------eccCccccccceeeEEEC
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCT-Y----------------------------RAYDAVDEITAAFSVAFN 182 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~-~----------------------------~~~~~~~~~~~v~~~~~~ 182 (279)
-+-.+.+.+++.||.|.+||.+....... . +.|........|...+-+
T Consensus 249 ---~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s 325 (404)
T KOG1409|consen 249 ---AQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSS 325 (404)
T ss_pred ---hhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCccccc
Confidence 23455789999999999999975432111 0 000000011122222222
Q ss_pred CCCCEEEEecCCeEEEEEccCCC---CceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 183 PTGTKIFAGYNKSVRVFDVHRPG---RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 183 ~~~~~l~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
....+...|..-.+|+-|--.+. .+...+..+ ..-...|+.+.+.. .-.+|+|++.|..|+|||++.
T Consensus 326 ~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~p----hei~tgItamhlqe-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 326 NRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIP----HEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred CccccccccceeEEEEecccchhhhcCCCCccccc----cccccceeEEEhhh-hccceeecCCceEEEEEechh
Confidence 22222223333445554432210 000111111 22234588999988 667999999999999999874
No 261
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.16 E-value=1e-09 Score=82.24 Aligned_cols=183 Identities=16% Similarity=0.241 Sum_probs=115.6
Q ss_pred cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (279)
..+|+-.|++++++.|+..++++. |-.|.+|.++-... ..+.....+ .....-..-|++..|+|.
T Consensus 160 aNaHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~--sFnIVDIKP-------~nmEeLteVITsaEFhp~----- 224 (433)
T KOG1354|consen 160 ANAHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQ--SFNIVDIKP-------ANMEELTEVITSAEFHPH----- 224 (433)
T ss_pred cccceeEeeeeeecCccceEeecc-ceeeeeccccccCC--ceeEEEccc-------cCHHHHHHHHhhhccCHh-----
Confidence 457999999999999999888776 78999999873211 000000000 000000123455556554
Q ss_pred CCCcEEEEecCCCcEEEEECCCCee----eEEEeccCcc-------ccccceeeEEECCCCCEEEEecCCeEEEEEccCC
Q 023672 136 PTSCVFASTTRDHPIHLWDATTGLL----RCTYRAYDAV-------DEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (279)
Q Consensus 136 ~~~~~l~s~~~d~~i~i~d~~~~~~----~~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~ 204 (279)
..+.++.++..|+|++.|++.... .+.+..+..+ +-...|..+.|+++|+++++-.=-+|++||+...
T Consensus 225 -~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme 303 (433)
T KOG1354|consen 225 -HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNME 303 (433)
T ss_pred -HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEecccc
Confidence 345788888899999999985421 1112211111 1123688999999999999876689999999776
Q ss_pred CCceeeeeeccccc-------C-CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672 205 GRDFEKYSTLKGNK-------E-GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (279)
Q Consensus 205 ~~~~~~~~~~~~~~-------~-~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~ 255 (279)
.++........... . ..-..-..++|+. ++..++||+..+.++++++..|
T Consensus 304 ~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 304 AKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred CCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCC
Confidence 66655442221100 0 0011234678998 8889999999999999996544
No 262
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.14 E-value=5e-08 Score=73.86 Aligned_cols=186 Identities=12% Similarity=0.165 Sum_probs=119.5
Q ss_pred eEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672 63 LKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (279)
+....|+|++++|++..- --.|.+|++..+.+..... .....+ ..|..+.|+|++++.
T Consensus 147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~--------------~~v~~G-------~GPRHi~FHpn~k~a 205 (346)
T COG2706 147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP--------------AEVKPG-------AGPRHIVFHPNGKYA 205 (346)
T ss_pred cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccc--------------cccCCC-------CCcceEEEcCCCcEE
Confidence 888999999999987753 2369999999765422111 111111 235556779999988
Q ss_pred EEecC-CCcEEEEECCCC-eeeEEEe----ccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeee
Q 023672 142 ASTTR-DHPIHLWDATTG-LLRCTYR----AYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 142 ~s~~~-d~~i~i~d~~~~-~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
+...+ +++|-+|..... .....+. .+.......+.-.|.++++|++|+++ ....|.+|.+...+..+.....
T Consensus 206 Y~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~ 285 (346)
T COG2706 206 YLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI 285 (346)
T ss_pred EEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence 77654 889999998763 2222222 12222233367789999999999976 4558999988875444443333
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCC-cEEEEec--CCCeEEEEEe-ecCCCEEEEEEc
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYRE--DNMELLYVLH-GQEGGVTHVSKL 274 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~i~~wd~--~~~~~~~~~~-~~~~~v~~~~~s 274 (279)
. ..+......+.|+| ++.+|+++.+++ .|.+|.. .+|++..... .......|+.|.
T Consensus 286 ~----~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 286 T----PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred e----ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 2 33444578899999 888888887655 4777765 4565543322 233455677775
No 263
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.13 E-value=3.4e-08 Score=72.62 Aligned_cols=186 Identities=12% Similarity=0.198 Sum_probs=112.6
Q ss_pred eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC-CcEE
Q 023672 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT-SCVF 141 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~l 141 (279)
=.-++||||+..||.+...|+|++||+.....-....... ....-...|..+.|..... ++. ...|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~-----------~~~d~~~Aiagl~Fl~~~~--s~~ws~EL 112 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMS-----------FPGDLSDAIAGLIFLEYKK--SAQWSYEL 112 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccc-----------cCCccccceeeeEeecccc--ccccceeE
Confidence 4568999999999999999999999998543311111000 0111233555555543311 222 2356
Q ss_pred EEecCCCcEEEEECCCC-----eeeEEEeccCccccccceeeEEECCCCCEEEE-e-cCC----------eEEEEEccCC
Q 023672 142 ASTTRDHPIHLWDATTG-----LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-G-YNK----------SVRVFDVHRP 204 (279)
Q Consensus 142 ~s~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~-~d~----------~i~~~d~~~~ 204 (279)
++-..+|.++-|-+..+ +....+..... ....|.++.++|..++|++ | ... -+..|.+-.+
T Consensus 113 lvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~--yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~ 190 (282)
T PF15492_consen 113 LVINYRGQLRSYLVSVGTNQGYQENHSFSFSSH--YPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD 190 (282)
T ss_pred EEEeccceeeeEEEEcccCCcceeeEEEEeccc--CCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC
Confidence 66777888887776332 22333332111 1227899999999888874 4 221 3566666542
Q ss_pred CCce-eee----------------eecc-----cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 205 GRDF-EKY----------------STLK-----GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 205 ~~~~-~~~----------------~~~~-----~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
.+. +.. ..+. .........|..+..|| ++.+||+...+|.|.+|++.+.++.....
T Consensus 191 -~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 191 -SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred -CCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 111 100 0000 00012356799999999 99999999999999999999988777665
Q ss_pred ecC
Q 023672 263 GQE 265 (279)
Q Consensus 263 ~~~ 265 (279)
.++
T Consensus 269 ~~e 271 (282)
T PF15492_consen 269 QDE 271 (282)
T ss_pred hhh
Confidence 443
No 264
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.13 E-value=5.3e-08 Score=79.03 Aligned_cols=173 Identities=13% Similarity=0.083 Sum_probs=101.2
Q ss_pred ceEEEEEccCCCe-EEEeeC---CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672 62 FLKGIKWSPDGSS-FLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 62 ~v~~~~~~~~~~~-l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (279)
.+....|+|||+. ++..+. +..|.++|+.+++... +. ...+......| +||
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-----------------lt-~~~g~~~~~~~-------SPD 243 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK-----------------IA-SSQGMLVVSDV-------SKD 243 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE-----------------Ee-cCCCcEEeeEE-------CCC
Confidence 6778999999985 554443 3568888887654311 11 12222333444 888
Q ss_pred CcEEEEe-cCC--CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCC--eEEEEEccCCCCceee
Q 023672 138 SCVFAST-TRD--HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNK--SVRVFDVHRPGRDFEK 210 (279)
Q Consensus 138 ~~~l~s~-~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~--~i~~~d~~~~~~~~~~ 210 (279)
|+.++.. +.+ ..|.++|+.+++... +..... ......|+|||+.|+ ++ ..+ .|.++|+.++ . .+.
T Consensus 244 G~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~-----~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g-~-~~r 315 (419)
T PRK04043 244 GSKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPG-----IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG-S-VEQ 315 (419)
T ss_pred CCEEEEEEccCCCcEEEEEECCCCcEEE-cccCCC-----ccCccEECCCCCEEEEEECCCCCceEEEEECCCC-C-eEe
Confidence 8766544 333 468888988776443 322221 123468999998877 44 333 6777787753 1 111
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEeCC---------CcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---------QTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---------g~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
+ +. .+.. ...|+| +|..|+..+.. ..|.+.|+.+++.. .+... .......|+|||+.
T Consensus 316 l-t~----~g~~----~~~~SP-DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-~~~~~p~~SPDG~~ 381 (419)
T PRK04043 316 V-VF----HGKN----NSSVST-YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-GVNQFPRFSSDGGS 381 (419)
T ss_pred C-cc----CCCc----CceECC-CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-CCcCCeEECCCCCE
Confidence 1 11 1111 248999 67766655433 26888898887643 34322 22346889999973
No 265
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1e-08 Score=81.90 Aligned_cols=180 Identities=12% Similarity=0.198 Sum_probs=130.0
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEc------c--------------CCCeEEEeeCCCeEEEEeCCCCcc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWS------P--------------DGSSFLTSSEDKTLRIFSLPENGI 94 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~------~--------------~~~~l~t~~~dg~i~iwd~~~~~~ 94 (279)
.+++|+...+++..-+.+...+ .+..++..|. | +-..++-|...|.|.+|+...++.
T Consensus 16 ~l~iw~t~~~~~~~e~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys~~~g~i 92 (541)
T KOG4547|consen 16 RLRIWDTAKNQLQQEFAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYSVAGGEI 92 (541)
T ss_pred eEEEEEccCceeeeeeccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEEecCCeE
Confidence 5788999988876644433222 2334444442 1 223567788899999999998765
Q ss_pred ccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCcccccc
Q 023672 95 SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEIT 174 (279)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 174 (279)
.... ....|.+.|.++.| +.+-..|.+++.|..+..|+....+..+.......
T Consensus 93 t~~~---------------st~~h~~~v~~~~~-------~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~----- 145 (541)
T KOG4547|consen 93 TAKL---------------STDKHYGNVNEILD-------AQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP----- 145 (541)
T ss_pred EEEE---------------ecCCCCCcceeeec-------ccccCceEecCCceeEEEEecccceeeeeeccCCC-----
Confidence 4321 12346678888876 55666899999999999999999999998887776
Q ss_pred ceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC-----CcEEE-EEeCCCcEE
Q 023672 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH-----TGMLA-IGSYSQTSA 248 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~-----~~~l~-~~~~dg~i~ 248 (279)
.+.+++++||+..++++ .+.|++||+++. +.+..+ .+|.++|.++.|.. . |.+++ +...+.-|.
T Consensus 146 ~~~sl~is~D~~~l~~a-s~~ik~~~~~~k----evv~~f----tgh~s~v~t~~f~~-~~~g~~G~~vLssa~~~r~i~ 215 (541)
T KOG4547|consen 146 LVSSLCISPDGKILLTA-SRQIKVLDIETK----EVVITF----TGHGSPVRTLSFTT-LIDGIIGKYVLSSAAAERGIT 215 (541)
T ss_pred ccceEEEcCCCCEEEec-cceEEEEEccCc----eEEEEe----cCCCcceEEEEEEE-eccccccceeeecccccccee
Confidence 78899999998887743 468999999984 444555 89999999999987 4 44444 445555678
Q ss_pred EEecCC
Q 023672 249 IYREDN 254 (279)
Q Consensus 249 ~wd~~~ 254 (279)
+|-+..
T Consensus 216 ~w~v~~ 221 (541)
T KOG4547|consen 216 VWVVEK 221 (541)
T ss_pred EEEEEc
Confidence 886654
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.12 E-value=1.6e-09 Score=79.43 Aligned_cols=171 Identities=13% Similarity=0.139 Sum_probs=113.3
Q ss_pred ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
..++|.-.++...|+. +.+.+++|+.|+.+.-||++-.+ .++......|...|.++.-+|
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---------------~~i~~n~kvH~~GV~SI~ss~---- 220 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---------------TFIWHNSKVHTSGVVSIYSSP---- 220 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---------------ceeeecceeeecceEEEecCC----
Confidence 6778999999999976 55788999999999999998321 111111222334566665433
Q ss_pred cCCCCcEEEEecCCCcEEEEECCC-CeeeEEEeccCccccccceeeEEECCCC--CEEEEecCCeEEEEEccCCCCceee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAGYNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~~~~ 210 (279)
|.+.+|++|+.|..|++||.++ ++++..-...+ .|+.+.++|.- .+++++.-...+|-+.......
T Consensus 221 --~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~G------GVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e--- 289 (339)
T KOG0280|consen 221 --PKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGG------GVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE--- 289 (339)
T ss_pred --CCCceEEEeccccceeeeehhcccCccccCcccc------ceEEEEecchhhhHHHHHHHhcCceEEEecccccc---
Confidence 4677999999999999999985 56665544443 89999999974 3444665555677777653222
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEe-CCCcEE-EEecCCCe
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS-YSQTSA-IYREDNME 256 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~-~dg~i~-~wd~~~~~ 256 (279)
........+.|.+-++.-.|.. -..+|++++ .|+.|+ +|-.-++.
T Consensus 290 ~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 290 FQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred hheeeeccccccceeecccccc-ccceeeeeeccccceeeeeeeccCC
Confidence 2222233367777777777755 445788765 466644 66554443
No 267
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.11 E-value=3.8e-10 Score=58.93 Aligned_cols=37 Identities=32% Similarity=0.561 Sum_probs=34.3
Q ss_pred eeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEe
Q 023672 52 QFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88 (279)
Q Consensus 52 ~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd 88 (279)
....+.+|.+.|++|+|+|++++|++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3457889999999999999999999999999999997
No 268
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=5.1e-10 Score=99.79 Aligned_cols=166 Identities=17% Similarity=0.260 Sum_probs=120.2
Q ss_pred CCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (279)
Q Consensus 57 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (279)
.-|-..|.++.=+|...+.+||+.||.|++|....++. +..........|+.+. |+.
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~----------------v~~~rt~g~s~vtr~~-------f~~ 2261 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ----------------VVCFRTAGNSRVTRSR-------FNH 2261 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCe----------------EEEeeccCcchhhhhh-------hcc
Confidence 33456688888888888999999999999999875432 1112222224555554 477
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee---cCCeEEEEEccCCCCceeeee
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~~~d~~~~~~~~~~~~ 212 (279)
+|+.+..+..||.+.+|.+. .++....+.|.. ......|-. ..++ +| .++.+.+||...+... ..
T Consensus 2262 qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk-----~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~-s~-- 2330 (2439)
T KOG1064|consen 2262 QGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNK-----ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMN-SL-- 2330 (2439)
T ss_pred cCCceeeeccCCceeecccC-CcceeccccCCc-----cccceeeee--hhhhccccCCCCCcccchhcccCccc-ce--
Confidence 89999999999999999987 555666666654 556666665 3444 33 5689999998763211 11
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVL 261 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 261 (279)
+. ..|.+.++++++-| ..++|++|+.+|.|++||++..+++.++
T Consensus 2331 -v~---~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2331 -VH---TCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred -ee---eecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 11 58899999999999 9999999999999999999877655444
No 269
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.05 E-value=2.4e-06 Score=64.80 Aligned_cols=180 Identities=14% Similarity=0.241 Sum_probs=112.6
Q ss_pred eEEEEEc-cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec----CCCceEEEEeeCcccccCCC
Q 023672 63 LKGIKWS-PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT----EGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 63 v~~~~~~-~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~ 137 (279)
..++++. +++. |+.+..++ +.++|..++..... .... .....+++ +++++
T Consensus 42 ~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~g~~~~~----------------~~~~~~~~~~~~~ND~-------~vd~~ 96 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADSGG-IAVVDPDTGKVTVL----------------ADLPDGGVPFNRPNDV-------AVDPD 96 (246)
T ss_dssp EEEEEEECTTSE-EEEEETTC-EEEEETTTTEEEEE----------------EEEETTCSCTEEEEEE-------EE-TT
T ss_pred CceEEEEccCCE-EEEEEcCc-eEEEecCCCcEEEE----------------eeccCCCcccCCCceE-------EEcCC
Confidence 6777887 5654 55555544 55668886533211 1110 12234444 45888
Q ss_pred CcEEEEecCC--------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc
Q 023672 138 SCVFASTTRD--------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 138 ~~~l~s~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~ 207 (279)
|++.++.... |.|..++.. ++.......-. ..+.|+|+|+++.|+ +- ..+.|..|++...+..
T Consensus 97 G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~------~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~ 169 (246)
T PF08450_consen 97 GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLG------FPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE 169 (246)
T ss_dssp S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEES------SEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC
T ss_pred CCEEEEecCCCccccccccceEEECCC-CeEEEEecCcc------cccceEECCcchheeecccccceeEEEeccccccc
Confidence 9877765543 457777776 55443333222 567999999999887 43 7888999999764432
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc-cCC
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL-SSA 277 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-pdg 277 (279)
+.....+. ......+..-.+++.. +|.+.++....+.|.++|.. |+.+..+......+++++|. ||.
T Consensus 170 ~~~~~~~~-~~~~~~g~pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~ 237 (246)
T PF08450_consen 170 LSNRRVFI-DFPGGPGYPDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDG 237 (246)
T ss_dssp EEEEEEEE-E-SSSSCEEEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTS
T ss_pred eeeeeeEE-EcCCCCcCCCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCC
Confidence 32222221 1122224578899999 88888888788999999987 99888888776689999994 554
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.05 E-value=5.3e-08 Score=87.46 Aligned_cols=182 Identities=13% Similarity=0.111 Sum_probs=108.9
Q ss_pred EEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE-
Q 023672 64 KGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF- 141 (279)
Q Consensus 64 ~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l- 141 (279)
.+++|+| ++..+++.+.++.|++||..++....-.. . ...... .... .....-..|..++++|++..|
T Consensus 686 ~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G-------~-G~~~~~-~g~~-~~~~~~~~P~GIavspdG~~LY 755 (1057)
T PLN02919 686 WDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG-------D-GYERNL-NGSS-GTSTSFAQPSGISLSPDLKELY 755 (1057)
T ss_pred eEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec-------C-CccccC-CCCc-cccccccCccEEEEeCCCCEEE
Confidence 5789999 56666777778999999987654311000 0 000000 0000 001112356667889998844
Q ss_pred EEecCCCcEEEEECCCCeeeEEEecc----------C---c---cccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC
Q 023672 142 ASTTRDHPIHLWDATTGLLRCTYRAY----------D---A---VDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP 204 (279)
Q Consensus 142 ~s~~~d~~i~i~d~~~~~~~~~~~~~----------~---~---~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~ 204 (279)
++-+.++.|++||+.++......... . . .........++++++|.++++. .++.|++||..++
T Consensus 756 VADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg 835 (1057)
T PLN02919 756 IADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK 835 (1057)
T ss_pred EEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC
Confidence 45566789999999876532111000 0 0 0001134689999999877765 8899999999863
Q ss_pred CCceeeeeeccc------ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672 205 GRDFEKYSTLKG------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL 257 (279)
Q Consensus 205 ~~~~~~~~~~~~------~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~ 257 (279)
........-.. ...+.-.....+++++ +|.++++-+.++.|++||+.+++.
T Consensus 836 -~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 836 -RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred -eEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEECCCCcc
Confidence 11111100000 0012223577899999 888999989999999999988764
No 271
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.2e-08 Score=78.82 Aligned_cols=134 Identities=19% Similarity=0.253 Sum_probs=89.9
Q ss_pred eeecCCCceEEEEeeCcccccCCCCcEEEE--ecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-E
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSCVFAS--TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A 190 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s--~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~ 190 (279)
+.....++|.++.| +++++.+++ |-.-.++.|+|++ +.++..+... +=.++-|+|.|++++ +
T Consensus 265 V~L~k~GPVhdv~W-------~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg-------pRN~~~fnp~g~ii~lA 329 (566)
T KOG2315|consen 265 VPLLKEGPVHDVTW-------SPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG-------PRNTAFFNPHGNIILLA 329 (566)
T ss_pred EecCCCCCceEEEE-------CCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC-------CccceEECCCCCEEEEe
Confidence 55566789999999 555655544 4556789999986 5555555432 336899999999988 6
Q ss_pred e---cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC------CCcEEEEecCCCeEEEEE
Q 023672 191 G---YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------SQTSAIYREDNMELLYVL 261 (279)
Q Consensus 191 ~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~------dg~i~~wd~~~~~~~~~~ 261 (279)
| ..|.|-+||+.+. +++..+. ....+-+.|+| +|.+++|++. |+.++||+. +|.++..-
T Consensus 330 GFGNL~G~mEvwDv~n~----K~i~~~~------a~~tt~~eW~P-dGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~ 397 (566)
T KOG2315|consen 330 GFGNLPGDMEVWDVPNR----KLIAKFK------AANTTVFEWSP-DGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEK 397 (566)
T ss_pred ecCCCCCceEEEeccch----hhccccc------cCCceEEEEcC-CCcEEEEEeccccEEecCCeEEEEe-cCceeehh
Confidence 6 3589999999872 3333331 12345689999 8999988864 678999997 55554332
Q ss_pred eecCCCEEEEEEcc
Q 023672 262 HGQEGGVTHVSKLS 275 (279)
Q Consensus 262 ~~~~~~v~~~~~sp 275 (279)
.-.. ....+.|-|
T Consensus 398 ~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 398 MFKS-ELLQVEWRP 410 (566)
T ss_pred hhhH-hHhheeeee
Confidence 2111 345555554
No 272
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=1.7e-09 Score=81.13 Aligned_cols=128 Identities=13% Similarity=0.117 Sum_probs=89.0
Q ss_pred CCCCcEEEEecCCCcEEEEECCCC-----eeeEEEeccCccccccceeeEEECC-CCCEEEEe-cCCeEEEEEccCCCCc
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTG-----LLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~-~d~~i~~~d~~~~~~~ 207 (279)
...++++..|...|.|..+|++.+ .+...+. |+. .|+++..-. ++.+|.++ .+|.|++||++.- +.
T Consensus 261 ~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~S-----svtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-K~ 333 (425)
T KOG2695|consen 261 AGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDS-----SVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-KC 333 (425)
T ss_pred cccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCc-----chhhhhhhccccceEeeccCcCceeEeeehhh-hc
Confidence 555779999999999999999875 2233333 333 788887766 56677655 9999999999973 22
Q ss_pred eeeeeecccccCCCCCce--EEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC----CEEEEEEc
Q 023672 208 FEKYSTLKGNKEGQAGIM--SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG----GVTHVSKL 274 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v--~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~----~v~~~~~s 274 (279)
.+.+... .+|-..- .-+-..+ ....+++++.|...+||.++.+.++.+++.... .+.+++|.
T Consensus 334 ~~~V~qY----eGHvN~~a~l~~~v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 334 KKSVMQY----EGHVNLSAYLPAHVKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccceeee----eccccccccccccccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 2224444 4553322 2233455 566888899999999999999999988875432 45666665
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.01 E-value=3.6e-08 Score=81.10 Aligned_cols=206 Identities=16% Similarity=0.157 Sum_probs=124.6
Q ss_pred CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
......|++|+....++|+|+.||.++|..+.+......... +.....-.......+|...|..+.| +.+.
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g--laa~snLsmNQtLeGH~~sV~vvTW-------Ne~~ 83 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG--LAAASNLSMNQTLEGHNASVMVVTW-------NENN 83 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc--cccccccchhhhhccCcceEEEEEe-------cccc
Confidence 345689999999999999999999999999876543222211 1111111122234567889999988 6677
Q ss_pred cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC--------CC---
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP--------GR--- 206 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~--------~~--- 206 (279)
+.|-++..+|.|.+|-+-.|.....+...... +-|.+++|+.+|..+... .||.|.+=.+..+ +.
T Consensus 84 QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnK---SvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~ 160 (1189)
T KOG2041|consen 84 QKLTTSDTSGLIIVWMLYKGSWCEEMINNRNK---SVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLA 160 (1189)
T ss_pred ccccccCCCceEEEEeeecccHHHHHhhCcCc---cEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhecc
Confidence 88999999999999999877654443332221 257788888888777644 6666554443321 00
Q ss_pred ---------------------------------ceeeeeecccccCCCCCceEEEEEc--------cCCCcEEEEEeCCC
Q 023672 207 ---------------------------------DFEKYSTLKGNKEGQAGIMSAIAFS--------PTHTGMLAIGSYSQ 245 (279)
Q Consensus 207 ---------------------------------~~~~~~~~~~~~~~~~~~v~~~~~s--------p~~~~~l~~~~~dg 245 (279)
...+.......+......+..++|. | +...|+.+-.+|
T Consensus 161 hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~p-drP~lavcy~nG 239 (1189)
T KOG2041|consen 161 HVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPP-DRPRLAVCYANG 239 (1189)
T ss_pred ceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCC-CCCEEEEEEcCc
Confidence 0000011111112222335566664 3 566788888889
Q ss_pred cEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 246 TSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 246 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
.+.|..-.+......+. -...+.++.|+|+|-
T Consensus 240 r~QiMR~eND~~Pvv~d-tgm~~vgakWnh~G~ 271 (1189)
T KOG2041|consen 240 RMQIMRSENDPEPVVVD-TGMKIVGAKWNHNGA 271 (1189)
T ss_pred eehhhhhcCCCCCeEEe-cccEeecceecCCCc
Confidence 88876544332222222 225677888888874
No 274
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=3.2e-08 Score=78.91 Aligned_cols=97 Identities=16% Similarity=0.224 Sum_probs=67.2
Q ss_pred ceeeEEECCCCCEEE--Ee--cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE---eCCCcE
Q 023672 175 AAFSVAFNPTGTKIF--AG--YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG---SYSQTS 247 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~--~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~---~~dg~i 247 (279)
.|...+|-|.|..++ +| ...++.+|-+++.......+..+. ....+.+-|+| .|++++.+ |..|.+
T Consensus 447 ~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d------k~~~N~vfwsP-kG~fvvva~l~s~~g~l 519 (698)
T KOG2314|consen 447 SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD------KKFANTVFWSP-KGRFVVVAALVSRRGDL 519 (698)
T ss_pred heeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc------ccccceEEEcC-CCcEEEEEEecccccce
Confidence 677899999997776 45 356899999986444444444442 23467899999 89988876 457889
Q ss_pred EEEecCCCeEEEE-EeecCCCEEEEEEccCCCC
Q 023672 248 AIYREDNMELLYV-LHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 248 ~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~~ 279 (279)
.++|+.-..+..+ ...|. ..+.+.|.|.|||
T Consensus 520 ~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRY 551 (698)
T KOG2314|consen 520 EFYDTDYADLKDTASPEHF-AATEVEWDPTGRY 551 (698)
T ss_pred EEEecchhhhhhccCcccc-ccccceECCCCCE
Confidence 9999875333222 12233 4577899999997
No 275
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.99 E-value=1.8e-06 Score=67.64 Aligned_cols=218 Identities=13% Similarity=0.094 Sum_probs=122.8
Q ss_pred eeeeEecCCCCcccceeeeeeccC-CCCCceEEEEEccCCCeEEEee-C-CCeEEEEeCCCCcccccccc--cccc--C-
Q 023672 34 WPLIRFDVPPHRTYHFYNQFRTSS-IPNNFLKGIKWSPDGSSFLTSS-E-DKTLRIFSLPENGISYDVNA--CSLA--K- 105 (279)
Q Consensus 34 ~~~~~~d~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~~-~-dg~i~iwd~~~~~~~~~~~~--~~~~--~- 105 (279)
-.+.+||..+.+.......-.... .....-..++++|||++|++.. . +..|.+.|+.+++....... |... .
T Consensus 77 d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~ 156 (352)
T TIGR02658 77 DYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTA 156 (352)
T ss_pred CEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEec
Confidence 357788888888765322100000 0012234788999999998776 3 78999999998876443221 1110 0
Q ss_pred -------CCCcccceeeecCCCc--eEEEE-eeC------cccccCC-CCcEEEEecCCCcEEEEECCCC-----eeeEE
Q 023672 106 -------DQDSYEASLVVTEGES--VYDFC-WFP------HMSASDP-TSCVFASTTRDHPIHLWDATTG-----LLRCT 163 (279)
Q Consensus 106 -------~~~~~~~~~~~~~~~~--v~~~~-~~~------~~~~~~~-~~~~l~s~~~d~~i~i~d~~~~-----~~~~~ 163 (279)
+.+.....+.....+. +.... |.+ ....+.+ ++.++..... |+|.+.|+... .....
T Consensus 157 e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~ 235 (352)
T TIGR02658 157 NDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEA 235 (352)
T ss_pred CCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeee
Confidence 0111111111111000 11111 111 1112234 7777776665 99999996543 22222
Q ss_pred EeccCccc--cccceeeEEECCCCCEEEEe-c--C--------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE
Q 023672 164 YRAYDAVD--EITAAFSVAFNPTGTKIFAG-Y--N--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (279)
Q Consensus 164 ~~~~~~~~--~~~~v~~~~~~~~~~~l~~~-~--d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (279)
+....... ......-++++|+++.+++. . . +.|.++|..+. +....+. . ...+..+++
T Consensus 236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~---v--G~~~~~iav 306 (352)
T TIGR02658 236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIE---L--GHEIDSINV 306 (352)
T ss_pred ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----eEEEEEe---C--CCceeeEEE
Confidence 22111100 11133459999999888852 1 2 57999999884 3333331 1 236889999
Q ss_pred ccCCCc-EEEEEe-CCCcEEEEecCCCeEEEEEe
Q 023672 231 SPTHTG-MLAIGS-YSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 231 sp~~~~-~l~~~~-~dg~i~~wd~~~~~~~~~~~ 262 (279)
+| ++. +|++.. .++.|.++|..+++.+.++.
T Consensus 307 S~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 307 SQ-DAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CC-CCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 99 666 776655 67889999999999998884
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.99 E-value=2e-07 Score=67.95 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=108.4
Q ss_pred eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceee-ecCCCceEEEEeeCcccccCCCCcEE
Q 023672 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLV-VTEGESVYDFCWFPHMSASDPTSCVF 141 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (279)
++.+++++|++++++.++...|-.|.++..... ...+. ......-.+. .|+.....+
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey---------------~~~~~~a~t~D~gF~~-------S~s~~~~~F 218 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY---------------IENIYEAPTSDHGFYN-------SFSENDLQF 218 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccce---------------eeeeEecccCCCceee-------eeccCcceE
Confidence 788999999999999999999999999753221 00111 1111122333 347778899
Q ss_pred EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEEEEe-cCCeEEEEEccCCCCceeeeeeccccc
Q 023672 142 ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (279)
Q Consensus 142 ~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~ 218 (279)
|++..||++.|||++...............+.+.+..+.|++-| .+|+.+ .-+.+.+.|+++ ....+.+.......
T Consensus 219 Av~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~-~~~~q~I~i~~d~~ 297 (344)
T KOG4532|consen 219 AVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN-YVNHQVIVIPDDVE 297 (344)
T ss_pred EEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc-CceeeEEecCcccc
Confidence 99999999999999986544433333333445589999999866 456655 788999999998 44444443333333
Q ss_pred CCCCC-ceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 219 EGQAG-IMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 219 ~~~~~-~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
..|.. .+...+|+. ++.-+.+.+++. +.=|++.+
T Consensus 298 ~~~~tq~ifgt~f~~-~n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 298 RKHNTQHIFGTNFNN-ENESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred ccccccccccccccC-CCcccccccchh-hheeeccc
Confidence 33433 377788887 555555555443 44455543
No 277
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=5e-09 Score=86.15 Aligned_cols=199 Identities=16% Similarity=0.191 Sum_probs=128.1
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccc----------------------ccc------c----cccccCCC
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGIS----------------------YDV------N----ACSLAKDQ 107 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~----------------------~~~------~----~~~~~~~~ 107 (279)
.+.+.++..+|.|+-++.+++-|. .+-|+...... .+. + .-.++...
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss 102 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS 102 (1081)
T ss_pred cCcccceeeccccchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC
Confidence 355777888888887777777663 34455432110 000 0 00011123
Q ss_pred CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCC-C
Q 023672 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPT-G 185 (279)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-~ 185 (279)
+..+..+.-+|+..|+++.|+|. +|+ .+++++.|..+..||+++.. +......-.. ....+.|+.. +
T Consensus 103 ~~aIef~lhghsraitd~n~~~q----~pd--Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-----~asqVkwnyk~p 171 (1081)
T KOG0309|consen 103 SNAIEFVLHGHSRAITDINFNPQ----HPD--VLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-----AASQVKWNYKDP 171 (1081)
T ss_pred ccceEEEEecCccceeccccCCC----CCc--ceeeccccccceeeeccCCCcceeeeecccc-----cCceeeecccCc
Confidence 33444455567778888888776 444 89999999999999999864 4444443333 4567899865 4
Q ss_pred CEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE-EEEeec
Q 023672 186 TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL-YVLHGQ 264 (279)
Q Consensus 186 ~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~ 264 (279)
..++++....|++||++.++.+.- .+ ++|...|..++|...-...+.+.+.||+|++||....... ......
T Consensus 172 ~vlasshg~~i~vwd~r~gs~pl~---s~----K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt 244 (1081)
T KOG0309|consen 172 NVLASSHGNDIFVWDLRKGSTPLC---SL----KGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT 244 (1081)
T ss_pred chhhhccCCceEEEeccCCCcceE---Ee----cccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccc
Confidence 556666889999999998654433 33 5678889999998755667889999999999998654321 122223
Q ss_pred CCCEEEEEEccCC
Q 023672 265 EGGVTHVSKLSSA 277 (279)
Q Consensus 265 ~~~v~~~~~spdg 277 (279)
..+|+--.+-|-|
T Consensus 245 ~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 245 NFPIWRGRYLPFG 257 (1081)
T ss_pred cCcceeccccccC
Confidence 4466666666543
No 278
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.97 E-value=2.5e-07 Score=70.01 Aligned_cols=193 Identities=15% Similarity=0.092 Sum_probs=116.7
Q ss_pred eeEecCCCCcccceee--eeeccCCCCCceEEEEEccCCCeEEEeeC-----CCeEEEEeCCCC-ccccccccccccCCC
Q 023672 36 LIRFDVPPHRTYHFYN--QFRTSSIPNNFLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPEN-GISYDVNACSLAKDQ 107 (279)
Q Consensus 36 ~~~~d~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-----dg~i~iwd~~~~-~~~~~~~~~~~~~~~ 107 (279)
..+||..++....... .-+-+.|| -.|++||++|++.-. .|.|-|||...+ ....
T Consensus 30 ~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~----------- 92 (305)
T PF07433_consen 30 ALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG----------- 92 (305)
T ss_pred EEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe-----------
Confidence 4678888777665322 12244555 579999999987533 588999999832 1111
Q ss_pred CcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec------------------CCCcEEEEECCCCeeeEEEeccCc
Q 023672 108 DSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------------------RDHPIHLWDATTGLLRCTYRAYDA 169 (279)
Q Consensus 108 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~------------------~d~~i~i~d~~~~~~~~~~~~~~~ 169 (279)
...+.-..|+.+.+.||+..|+.+. .+..+.+.|..+|+.+........
T Consensus 93 -------------E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 93 -------------EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred -------------EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 1111112344445567776665542 234577778888887776554221
Q ss_pred cccccceeeEEECCCCCEEEEe-cCC-------eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEE-EE
Q 023672 170 VDEITAAFSVAFNPTGTKIFAG-YNK-------SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGML-AI 240 (279)
Q Consensus 170 ~~~~~~v~~~~~~~~~~~l~~~-~d~-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l-~~ 240 (279)
. +...+..+++.++|..+++. ..+ -+.+++... .+..+..-......-.+.+-+|++++ ++.++ +|
T Consensus 160 ~-~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~---~~~~~~~p~~~~~~l~~Y~gSIa~~~-~g~~ia~t 234 (305)
T PF07433_consen 160 L-HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG---ALRLLPAPEEQWRRLNGYIGSIAADR-DGRLIAVT 234 (305)
T ss_pred c-cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC---cceeccCChHHHHhhCCceEEEEEeC-CCCEEEEE
Confidence 1 11278999999999888764 322 244444432 22222111111123356799999999 66555 55
Q ss_pred EeCCCcEEEEecCCCeEEEEEee
Q 023672 241 GSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 241 ~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
+-..+.+.+||..+++.+.....
T Consensus 235 sPrGg~~~~~d~~tg~~~~~~~l 257 (305)
T PF07433_consen 235 SPRGGRVAVWDAATGRLLGSVPL 257 (305)
T ss_pred CCCCCEEEEEECCCCCEeecccc
Confidence 56677899999999998766553
No 279
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.95 E-value=2.9e-07 Score=81.45 Aligned_cols=196 Identities=14% Similarity=0.199 Sum_probs=114.3
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc------------------cccccCCC-Ccc------ccee
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN------------------ACSLAKDQ-DSY------EASL 114 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------------------~~~~~~~~-~~~------~~~~ 114 (279)
...|.+++||||+..|+.++.++++.+.+.. .....+.. +.....+. .+. ....
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 5689999999999999999989988876532 11000000 00000000 000 0000
Q ss_pred e------ecCCCceEEEEeeCcccccCCCCcEEEEecC---C---CcEEEEECCCCeeeEEEeccCccccccceeeEEEC
Q 023672 115 V------VTEGESVYDFCWFPHMSASDPTSCVFASTTR---D---HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182 (279)
Q Consensus 115 ~------~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~---d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (279)
. ......-..++| -.||.++|+.+. . +.+++|+-+ |....+-..... --.+++|.
T Consensus 199 ~~~d~~~~s~dd~~~~ISW-------RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g-----Le~~l~Wr 265 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISW-------RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG-----LEGALSWR 265 (928)
T ss_pred CccccCccccCCCceEEEE-------CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC-----ccCCccCC
Confidence 0 001123334555 779999998865 2 579999955 665444432222 22479999
Q ss_pred CCCCEEEEe-c---CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe--
Q 023672 183 PTGTKIFAG-Y---NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME-- 256 (279)
Q Consensus 183 ~~~~~l~~~-~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~-- 256 (279)
|.|++|++. . ...|.+|.-+ |..-. .+.-........|..++|++ ++.+|+..-.|. |.+|-..+..
T Consensus 266 PsG~lIA~~q~~~~~~~VvFfErN--GLrhg---eF~l~~~~~~~~v~~l~Wn~-ds~iLAv~~~~~-vqLWt~~NYHWY 338 (928)
T PF04762_consen 266 PSGNLIASSQRLPDRHDVVFFERN--GLRHG---EFTLRFDPEEEKVIELAWNS-DSEILAVWLEDR-VQLWTRSNYHWY 338 (928)
T ss_pred CCCCEEEEEEEcCCCcEEEEEecC--CcEee---eEecCCCCCCceeeEEEECC-CCCEEEEEecCC-ceEEEeeCCEEE
Confidence 999999964 2 2455556544 22211 12111124456789999999 999999977665 9999988765
Q ss_pred EEEEEeec-CCCEEEEEEccC
Q 023672 257 LLYVLHGQ-EGGVTHVSKLSS 276 (279)
Q Consensus 257 ~~~~~~~~-~~~v~~~~~spd 276 (279)
+.+.+... ...+..+.|+|.
T Consensus 339 LKqei~~~~~~~~~~~~Wdpe 359 (928)
T PF04762_consen 339 LKQEIRFSSSESVNFVKWDPE 359 (928)
T ss_pred EEEEEEccCCCCCCceEECCC
Confidence 33444422 234455888885
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.94 E-value=4.3e-07 Score=81.77 Aligned_cols=205 Identities=10% Similarity=0.118 Sum_probs=117.8
Q ss_pred eEEEEEccCCCeEEEee-CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCC-ceEEEEeeCcccccCC-CCc
Q 023672 63 LKGIKWSPDGSSFLTSS-EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDP-TSC 139 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~-~~~ 139 (279)
-.+++++++++.|+++. ..+.|+++|+.++....-...-.. . .....+. .....-..|..++++| ++.
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~-----g----~~~~gg~~~~~~~ln~P~gVa~dp~~g~ 696 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTK-----G----SDYQGGKKGTSQVLNSPWDVCFEPVNEK 696 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcc-----c----CCCCCChhhhHhhcCCCeEEEEecCCCe
Confidence 47889999887666554 457899999876532110000000 0 0000000 0000112344556677 566
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCc----------cccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDA----------VDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~ 207 (279)
++++.+.++.|++||..++... .+..... ......+..|+++|++..|+ +. .++.|++||+.+++..
T Consensus 697 LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~ 775 (1057)
T PLN02919 697 VYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSR 775 (1057)
T ss_pred EEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 6677778899999999877543 2221100 00112456899999998666 44 7799999999864211
Q ss_pred eeeee-----ecccccC--------CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe------------
Q 023672 208 FEKYS-----TLKGNKE--------GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH------------ 262 (279)
Q Consensus 208 ~~~~~-----~~~~~~~--------~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~------------ 262 (279)
..... .....+. ..-.....+++++ +|.++++-..++.|++||..++.......
T Consensus 776 ~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~ 854 (1057)
T PLN02919 776 LLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL 854 (1057)
T ss_pred EEEecccccCcccccccCCCCchhhhhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc
Confidence 00000 0000000 0112356899999 88899998999999999998876543221
Q ss_pred -ecCCCEEEEEEccCCC
Q 023672 263 -GQEGGVTHVSKLSSAY 278 (279)
Q Consensus 263 -~~~~~v~~~~~spdg~ 278 (279)
+.-....+|+++++|+
T Consensus 855 ~a~l~~P~GIavd~dG~ 871 (1057)
T PLN02919 855 KAQLSEPAGLALGENGR 871 (1057)
T ss_pred ccccCCceEEEEeCCCC
Confidence 1112568899999986
No 281
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.92 E-value=7.2e-09 Score=74.91 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=60.1
Q ss_pred ceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
.|.+++-+|..+.++ +| .||.+-+||.+... .....+..|+.++..+-|+|.++..|+++++||.+.-||.
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wda 253 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDA 253 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcC
Confidence 588999999876665 67 89999999999741 2222337899999999999988999999999999999997
Q ss_pred CC
Q 023672 253 DN 254 (279)
Q Consensus 253 ~~ 254 (279)
.+
T Consensus 254 s~ 255 (319)
T KOG4714|consen 254 ST 255 (319)
T ss_pred CC
Confidence 64
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=1.2e-06 Score=71.21 Aligned_cols=187 Identities=10% Similarity=0.088 Sum_probs=102.0
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEE-eeCC--CeEEEEeCCCCccccccccccccCCCCccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLT-SSED--KTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t-~~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
.++++|+.+++... +....+.+....|+|||+.|+. .+.+ ..|.++|+.++....
T Consensus 214 ~Iyv~dl~tg~~~~-------lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~--------------- 271 (419)
T PRK04043 214 TLYKYNLYTGKKEK-------IASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQ--------------- 271 (419)
T ss_pred EEEEEECCCCcEEE-------EecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEE---------------
Confidence 45566666555432 2224455667889999987764 3334 457777776553211
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (279)
+.. ........ .|+|||+.|+..+. .+ .|.++|+.+++....... .. ....|+|+|+.+
T Consensus 272 --LT~-~~~~d~~p-------~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-------~~~~~SPDG~~I 333 (419)
T PRK04043 272 --ITN-YPGIDVNG-------NFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-------NNSSVSTYKNYI 333 (419)
T ss_pred --ccc-CCCccCcc-------EECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC-------cCceECCCCCEE
Confidence 110 11111112 35889987776653 23 588889888776443321 11 124899999988
Q ss_pred E-Ee-cC--------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CCc--EEEEecCCC
Q 023672 189 F-AG-YN--------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQT--SAIYREDNM 255 (279)
Q Consensus 189 ~-~~-~d--------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~--i~~wd~~~~ 255 (279)
+ ++ .. ..|.+.|+.++ . .. .+.. . .......|+| +|..|+..+. .+. +.+.++..
T Consensus 334 a~~~~~~~~~~~~~~~~I~v~d~~~g-~-~~---~LT~---~--~~~~~p~~SP-DG~~I~f~~~~~~~~~L~~~~l~g- 401 (419)
T PRK04043 334 VYSSRETNNEFGKNTFNLYLISTNSD-Y-IR---RLTA---N--GVNQFPRFSS-DGGSIMFIKYLGNQSALGIIRLNY- 401 (419)
T ss_pred EEEEcCCCcccCCCCcEEEEEECCCC-C-eE---ECCC---C--CCcCCeEECC-CCCEEEEEEccCCcEEEEEEecCC-
Confidence 8 44 32 36788888763 1 12 2211 1 1223578999 7766655443 333 55666643
Q ss_pred eEEEEEeecCCCEEEEEE
Q 023672 256 ELLYVLHGQEGGVTHVSK 273 (279)
Q Consensus 256 ~~~~~~~~~~~~v~~~~~ 273 (279)
.....+....+.+...+|
T Consensus 402 ~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 402 NKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred CeeEEeecCCCccCCCCC
Confidence 334445544455554443
No 283
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.85 E-value=8e-06 Score=61.04 Aligned_cols=199 Identities=12% Similarity=0.098 Sum_probs=105.4
Q ss_pred ccCCCCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
.+.+-...+.+++|+|+.. ++++....+.|..++.+ ++.... +.....+..-.+.+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~----------------i~l~g~~D~EgI~y------ 72 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRR----------------IPLDGFGDYEGITY------ 72 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEE----------------EE-SS-SSEEEEEE------
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEE----------------EeCCCCCCceeEEE------
Confidence 4445556699999999755 56677778888888865 332211 22222233444444
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCe------eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccC--C
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGL------LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR--P 204 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~--~ 204 (279)
..++.++++.-.++.+.++++.... ....+...........+..++|+|.++.+++. ...-..+|.++. .
T Consensus 73 -~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~ 151 (248)
T PF06977_consen 73 -LGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPG 151 (248)
T ss_dssp --STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-
T ss_pred -ECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccC
Confidence 4466677766668889988884321 12223322222233368899999987777755 555566666653 1
Q ss_pred CCceeeeeecc-cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC---------CCEEEEEEc
Q 023672 205 GRDFEKYSTLK-GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE---------GGVTHVSKL 274 (279)
Q Consensus 205 ~~~~~~~~~~~-~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s 274 (279)
........... .........+.+++++|..+.+++....+..|..+| .+|+++..+.-.. ...-+|+|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d 230 (248)
T PF06977_consen 152 GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD 230 (248)
T ss_dssp SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-
T ss_pred ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEEC
Confidence 11111111110 001233446889999998888899988999999999 7888776665333 247899999
Q ss_pred cCCC
Q 023672 275 SSAY 278 (279)
Q Consensus 275 pdg~ 278 (279)
++|+
T Consensus 231 ~~G~ 234 (248)
T PF06977_consen 231 PDGN 234 (248)
T ss_dssp TT--
T ss_pred CCCC
Confidence 9985
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.84 E-value=4.4e-07 Score=71.42 Aligned_cols=147 Identities=12% Similarity=0.127 Sum_probs=105.1
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCC-eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDK-TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
...+|.+.|.-..+.-+++-++.|..|| .+-|||..++.... ....-+.|..+..
T Consensus 354 iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr------------------~e~~lg~I~av~v------ 409 (668)
T COG4946 354 IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR------------------IEKDLGNIEAVKV------ 409 (668)
T ss_pred EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE------------------eeCCccceEEEEE------
Confidence 5567888899999988888999999999 89999999775421 1222245666644
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-----cCCeEEEEEccCCCCce
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-----YNKSVRVFDVHRPGRDF 208 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~d~~i~~~d~~~~~~~~ 208 (279)
+++|++++.+.....|-+.|+.+++....-+.... -|+.+.|||+++++|-+ ....|+++|+..+ +..
T Consensus 410 -s~dGK~~vvaNdr~el~vididngnv~~idkS~~~-----lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~-Kiy 482 (668)
T COG4946 410 -SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG-----LITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG-KIY 482 (668)
T ss_pred -cCCCcEEEEEcCceEEEEEEecCCCeeEecccccc-----eeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC-eEE
Confidence 88999999999899999999999986554443333 78999999999999943 4467999999873 222
Q ss_pred eeeeecccccCCCCCceEEEEEccCCCcEEEEE
Q 023672 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~ 241 (279)
... +. .++ =.+-+|.| ++.+|.--
T Consensus 483 ~vT-T~----ta~---DfsPaFD~-d~ryLYfL 506 (668)
T COG4946 483 DVT-TP----TAY---DFSPAFDP-DGRYLYFL 506 (668)
T ss_pred Eec-CC----ccc---ccCcccCC-CCcEEEEE
Confidence 211 11 122 23457778 66655443
No 285
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.83 E-value=7.1e-08 Score=80.20 Aligned_cols=154 Identities=12% Similarity=0.079 Sum_probs=110.6
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
.+.+.|++++ +++|+-|+.+|.|.+++...... ....+.. ...+|.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~-------------------~~~~~s~-------------~~~~Ge 84 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNPK-------------------TNFDHSS-------------SILEGE 84 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCccc-------------------ccccccc-------------cccCCc
Confidence 4667787776 57899999999999999874210 0111110 144789
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC-----CCEEEEe-cCCeEEEEEccCCCCceeeeee
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-----GTKIFAG-YNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
++++|+.||+|.|-.+-+.+...++..+. ++.+++++|+ .+.+++| ..| +.++.-+--+.....
T Consensus 85 y~asCS~DGkv~I~sl~~~~~~~~~df~r------piksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--- 154 (846)
T KOG2066|consen 85 YVASCSDDGKVVIGSLFTDDEITQYDFKR------PIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--- 154 (846)
T ss_pred eEEEecCCCcEEEeeccCCccceeEecCC------cceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce---
Confidence 99999999999999999888888777766 8899999998 3556655 555 777765421111111
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
....-.++|.+++| .|+++|-++.+| |++||+.+.+.+..++..
T Consensus 155 ---~l~~~eG~I~~i~W---~g~lIAWand~G-v~vyd~~~~~~l~~i~~p 198 (846)
T KOG2066|consen 155 ---VLSEGEGPIHSIKW---RGNLIAWANDDG-VKVYDTPTRQRLTNIPPP 198 (846)
T ss_pred ---eeecCccceEEEEe---cCcEEEEecCCC-cEEEeccccceeeccCCC
Confidence 11345689999999 557999998877 899999998877766543
No 286
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.83 E-value=1.8e-08 Score=52.40 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=30.8
Q ss_pred CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
.+|...|.+++|+| ++.+|++|+.|+.|++||
T Consensus 8 ~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 8 RGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp ESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred cCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 79999999999999 899999999999999997
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.82 E-value=7.3e-07 Score=74.28 Aligned_cols=210 Identities=14% Similarity=0.232 Sum_probs=133.6
Q ss_pred eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC------------CeEEEeeCCCeEEEEeCCCCccccccccccc
Q 023672 36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG------------SSFLTSSEDKTLRIFSLPENGISYDVNACSL 103 (279)
Q Consensus 36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------------~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~ 103 (279)
+.+.|..+.+.+. .+.-|...|+.+.|.|-. -+||++...|.|.+||...+....
T Consensus 37 V~VVDs~s~q~iq------sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~------- 103 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQ------SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVIN------- 103 (1062)
T ss_pred EEEEehhhhhhhh------ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhh-------
Confidence 3444544444443 677799999999998721 156788889999999998543211
Q ss_pred cCCCCcccceeeecCCCceEEEEeeCcccccCCCC-cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC
Q 023672 104 AKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS-CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182 (279)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (279)
...++..++.+++|.|. -++. ..|+.-....+|.+|+..+|+...+...... ...|+.+.
T Consensus 104 ----------~l~~~~~~~qdl~W~~~----rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~-----iLs~f~~D 164 (1062)
T KOG1912|consen 104 ----------WLSHSNDSVQDLCWVPA----RDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE-----ILSCFRVD 164 (1062)
T ss_pred ----------hhcCCCcchhheeeeec----cCcchheeEEecCCcEEEEEEccCCceeeccccCCc-----ceeeeeeC
Confidence 23456678899999764 3344 4667777788999999999998887766554 55668888
Q ss_pred CC-CCEEE-EecCCeEEEEEccCCCC---ceeeeeeccccc------------CCCCC---------ceEEEEEccCCCc
Q 023672 183 PT-GTKIF-AGYNKSVRVFDVHRPGR---DFEKYSTLKGNK------------EGQAG---------IMSAIAFSPTHTG 236 (279)
Q Consensus 183 ~~-~~~l~-~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~------------~~~~~---------~v~~~~~sp~~~~ 236 (279)
|- .+.+. .|..|.+.+-+.-.... +.+.++.-.... ..++. ....++|+| .-.
T Consensus 165 Pfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p-~~r 243 (1062)
T KOG1912|consen 165 PFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSP-HWR 243 (1062)
T ss_pred CCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcCh-hhh
Confidence 84 34443 55777766665532111 111111110000 00000 122457788 444
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 237 MLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 237 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
-++-......+.++|+.-..++..+.-..+.+.-+.|-||++
T Consensus 244 n~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~~~ 285 (1062)
T KOG1912|consen 244 NILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPR 285 (1062)
T ss_pred ceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccCCC
Confidence 444445567799999988888888887777777788888765
No 288
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.82 E-value=2e-07 Score=70.19 Aligned_cols=201 Identities=15% Similarity=0.218 Sum_probs=108.0
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCC-Ccccccc-----ccccccCCCCcccceeeecCCCceEEEEee
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE-NGISYDV-----NACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (279)
.+.||.+.|+....-|...-+++.+.|.+++||--.. ++.-... ..+.......+....+.....+.++....+
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~s 98 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALS 98 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhh
Confidence 7889999999999989778899999999999996543 2221100 011100001111111111111222222110
Q ss_pred Cc------------------ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672 129 PH------------------MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (279)
Q Consensus 129 ~~------------------~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (279)
-. .+-|+-....+++.+.|..+..--.+.+..+..+.... ...++.+.-. +.+.
T Consensus 99 edfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~------~~t~~~~d~~--~~fv 170 (404)
T KOG1409|consen 99 EDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFET------PASALQFDAL--YAFV 170 (404)
T ss_pred hhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeec------cCCCCceeeE--EEEe
Confidence 00 11123333455555555555433334443332222211 1112222111 3335
Q ss_pred e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE-EEEEeecCCCE
Q 023672 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL-LYVLHGQEGGV 268 (279)
Q Consensus 191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v 268 (279)
| ..|.|.+-.+... ....+.++ .+|.+.+++++|.| ...+|.+|..|..+.+||+.-.+- ...+.+|...|
T Consensus 171 Gd~~gqvt~lr~~~~--~~~~i~~~----~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV 243 (404)
T KOG1409|consen 171 GDHSGQITMLKLEQN--GCQLITTF----NGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKV 243 (404)
T ss_pred cccccceEEEEEeec--CCceEEEE----cCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhh
Confidence 5 5666666555431 12233333 79999999999999 889999999999999999975542 35666666655
Q ss_pred EE
Q 023672 269 TH 270 (279)
Q Consensus 269 ~~ 270 (279)
..
T Consensus 244 ~~ 245 (404)
T KOG1409|consen 244 QA 245 (404)
T ss_pred hh
Confidence 43
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=5e-08 Score=72.56 Aligned_cols=197 Identities=15% Similarity=0.201 Sum_probs=112.3
Q ss_pred CceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCccccc------------cccc---------cccCCCCcccceeeec
Q 023672 61 NFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYD------------VNAC---------SLAKDQDSYEASLVVT 117 (279)
Q Consensus 61 ~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~------------~~~~---------~~~~~~~~~~~~~~~~ 117 (279)
..|..+.|..++ ..++..+.|.+|++|.+.+...... .... .....++..++ .
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iia----a 161 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIA----A 161 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEE----e
Confidence 457888887654 3566777899999999876532100 0000 00001111111 1
Q ss_pred CCCceE--EEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCee---eEEEeccCccccccceeeEEECCCCCEE--EE
Q 023672 118 EGESVY--DFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKI--FA 190 (279)
Q Consensus 118 ~~~~v~--~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l--~~ 190 (279)
....|+ ...++..++.++.+...++++. |-.|.+|++.-... +..++.+.......-|++..|+|....+ ++
T Consensus 162 ~p~rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS 240 (460)
T COG5170 162 KPCRVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS 240 (460)
T ss_pred ccceeccccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence 111111 1223344556677777777654 77899999875322 2333333332333367889999975333 36
Q ss_pred ecCCeEEEEEccCCCCceeeeeeccc--------ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eEEEEE
Q 023672 191 GYNKSVRVFDVHRPGRDFEKYSTLKG--------NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-ELLYVL 261 (279)
Q Consensus 191 ~~d~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~~~~~ 261 (279)
+..|.|++-|+|...........+.. .+.+-...|..+.|++ +|+++++-+. -+++|||++.. .++.++
T Consensus 241 sSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwDvnm~k~pikTi 318 (460)
T COG5170 241 SSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWDVNMAKNPIKTI 318 (460)
T ss_pred cCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEecccccCCceee
Confidence 69999999999952111000001100 1122234688899999 9988887654 57999999854 567777
Q ss_pred eec
Q 023672 262 HGQ 264 (279)
Q Consensus 262 ~~~ 264 (279)
+.|
T Consensus 319 ~~h 321 (460)
T COG5170 319 PMH 321 (460)
T ss_pred chH
Confidence 555
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=2.8e-08 Score=76.02 Aligned_cols=89 Identities=22% Similarity=0.271 Sum_probs=70.1
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
..-||-..++.++|+||+++++++.+|..|+|-.....- .+..+..+|..-|..++..
T Consensus 146 ~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f----------------~IesfclGH~eFVS~isl~------ 203 (390)
T KOG3914|consen 146 PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF----------------VIESFCLGHKEFVSTISLT------ 203 (390)
T ss_pred hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc----------------chhhhccccHhheeeeeec------
Confidence 567899999999999999999999999999997765321 1112455677778777652
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEecc
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~ 167 (279)
++..|++++.|++|++||+.+|+.+.++...
T Consensus 204 --~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 204 --DNYLLLSGSGDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred --cCceeeecCCCCcEEEEecccCCcccccchh
Confidence 4456899999999999999999988766543
No 291
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.78 E-value=8.5e-08 Score=72.24 Aligned_cols=148 Identities=10% Similarity=0.099 Sum_probs=100.4
Q ss_pred CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
-.+.|.++.|...++++..|.++|.|..+|++.+.. .+.-+.....|+..|+++.- +.-++
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq-------------G~~~~a~rlyh~Ssvtslq~------Lq~s~ 311 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ-------------GNGWCAQRLYHDSSVTSLQI------LQFSQ 311 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeeccc-------------CCCcceEEEEcCcchhhhhh------hcccc
Confidence 356789999998899999999999999999986421 11222345566677777653 12267
Q ss_pred cEEEEecCCCcEEEEECCCCee---eEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeec
Q 023672 139 CVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTL 214 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~ 214 (279)
++|.+.+.+|+|++||++--++ +..+.+|-... .-.-+...+....++ +|.|-..++|.++.+ ..+.++
T Consensus 312 q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~---a~l~~~v~~eeg~I~s~GdDcytRiWsl~~g----hLl~ti 384 (425)
T KOG2695|consen 312 QKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLS---AYLPAHVKEEEGSIFSVGDDCYTRIWSLDSG----HLLCTI 384 (425)
T ss_pred ceEeeccCcCceeEeeehhhhcccceeeeecccccc---cccccccccccceEEEccCeeEEEEEecccC----ceeecc
Confidence 7999999999999999987666 67776665421 112234556666666 569999999999974 334444
Q ss_pred ccccCCCCCceEEEEEcc
Q 023672 215 KGNKEGQAGIMSAIAFSP 232 (279)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp 232 (279)
+.........+.+++|..
T Consensus 385 pf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 385 PFPYSASEVDIPSVAFDS 402 (425)
T ss_pred CCCCccccccccceehhc
Confidence 333334444566677653
No 292
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.77 E-value=6.3e-08 Score=77.55 Aligned_cols=193 Identities=12% Similarity=0.173 Sum_probs=120.4
Q ss_pred eeeeeEecCCCC-cccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672 33 TWPLIRFDVPPH-RTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 33 ~~~~~~~d~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
...+..|.+.+. .-.....+..+...|+.+|.++.|-.+-++++++ ||-|.+||.--+.........
T Consensus 756 DKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~da---------- 823 (1034)
T KOG4190|consen 756 DKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDA---------- 823 (1034)
T ss_pred CceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcC----------
Confidence 335666765432 2222233444888999999999999998887765 789999997654432111000
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEE-EEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVF-ASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA 190 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l-~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 190 (279)
-....++.|.++. +-+...+ +.|+...+|+++|.+..+....++.....+...-+.+++..|.|+.+++
T Consensus 824 --pk~~a~~~ikcl~--------nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa 893 (1034)
T KOG4190|consen 824 --PKEGAGGNIKCLE--------NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAA 893 (1034)
T ss_pred --cccCCCceeEecc--------cCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhH
Confidence 0111223333332 2233344 4447889999999999988888876655555457889999999999998
Q ss_pred e-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEE-EecCCCeE
Q 023672 191 G-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI-YREDNMEL 257 (279)
Q Consensus 191 ~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~-wd~~~~~~ 257 (279)
+ .+|.|.+.|.+++ .....+..... ....++ .| ..+.|+....|.++.+ |..-.+..
T Consensus 894 ~LSnGci~~LDaR~G-~vINswrpmec-------dllqla-ap-sdq~L~~saldHslaVnWhaldgim 952 (1034)
T KOG4190|consen 894 ALSNGCIAILDARNG-KVINSWRPMEC-------DLLQLA-AP-SDQALAQSALDHSLAVNWHALDGIM 952 (1034)
T ss_pred HhcCCcEEEEecCCC-ceeccCCcccc-------hhhhhc-Cc-hhHHHHhhcccceeEeeehhcCCee
Confidence 8 9999999999984 22222211110 111111 24 4556666666777777 76555443
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.76 E-value=8.8e-09 Score=86.56 Aligned_cols=182 Identities=13% Similarity=0.114 Sum_probs=116.8
Q ss_pred eeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 51 NQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 51 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
+..+.+..|+...+|++|+-+.+.|++|+-.|.|++|++.+|.... ....|+.+|+-+.-
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~-----------------s~ncH~SavT~veP--- 1151 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE-----------------SVNCHQSAVTLVEP--- 1151 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc-----------------cccccccccccccc---
Confidence 3444677788999999999999999999999999999999875432 22345556666643
Q ss_pred ccccCCCCcEEEEecCC-C-cEEEEECCC-CeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCC
Q 023672 131 MSASDPTSCVFASTTRD-H-PIHLWDATT-GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGR 206 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d-~-~i~i~d~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~ 206 (279)
+.+|..+++.+.- . ...+|++.+ +....++.. -.++.|+.....-+.| ......+||+.+. .
T Consensus 1152 ----s~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~e---------d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~-~ 1217 (1516)
T KOG1832|consen 1152 ----SVDGSTQLTSSSSSSPLSALWDASSTGGPRHSFDE---------DKAVKFSNSLQFRALGTEADDALLYDVQTC-S 1217 (1516)
T ss_pred ----cCCcceeeeeccccCchHHHhccccccCccccccc---------cceeehhhhHHHHHhcccccceEEEecccC-c
Confidence 4566665555433 2 467999864 444555443 3478898775554545 6678899999984 2
Q ss_pred ceee-eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 207 DFEK-YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 207 ~~~~-~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
+... +... .+....-+.+.|+| ...+++- || .+||++..+.+..|...+..+. =.|||.|
T Consensus 1218 ~l~tylt~~----~~~~y~~n~a~FsP-~D~LIln---dG--vLWDvR~~~aIh~FD~ft~~~~-G~FHP~g 1278 (1516)
T KOG1832|consen 1218 PLQTYLTDT----VTSSYSNNLAHFSP-CDTLILN---DG--VLWDVRIPEAIHRFDQFTDYGG-GGFHPSG 1278 (1516)
T ss_pred HHHHhcCcc----hhhhhhccccccCC-CcceEee---Cc--eeeeeccHHHHhhhhhheeccc-ccccCCC
Confidence 2222 1111 22233346788999 6666653 45 3788887776666654442222 2366665
No 294
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=7.4e-07 Score=73.70 Aligned_cols=184 Identities=10% Similarity=0.102 Sum_probs=119.1
Q ss_pred eccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 54 RTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
+++.||.+.|..+.|+.+.+.|-|+..+|.|.||-+-.+....+. +.......|.+++|
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEM---------------iNnRnKSvV~SmsW------ 123 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEM---------------INNRNKSVVVSMSW------ 123 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHH---------------hhCcCccEEEEEEE------
Confidence 478999999999999999999999999999999999876543221 22334456788888
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeee-EEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEcc---------
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLR-CTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH--------- 202 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~--------- 202 (279)
+.+|..++....||.|.+=.++..+.- +.+++. ....+.|++|.+.++.+ ..|.+.+||..
T Consensus 124 -n~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~-------~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~ 195 (1189)
T KOG2041|consen 124 -NLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQ-------LLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEK 195 (1189)
T ss_pred -cCCCcEEEEEEccCCEEEEeeccceecchhcchh-------eccceeecccHHHHHhhhcCCcEEEecccccHHHhhhh
Confidence 667888888888887766555432211 111111 22345555555444433 44555555432
Q ss_pred ----------------------------------------------------CCCCceeeeeecccccCCCCCceEEEEE
Q 023672 203 ----------------------------------------------------RPGRDFEKYSTLKGNKEGQAGIMSAIAF 230 (279)
Q Consensus 203 ----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 230 (279)
+...+.. -...-.+..+.|
T Consensus 196 ~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv---------~dtgm~~vgakW 266 (1189)
T KOG2041|consen 196 DCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVV---------VDTGMKIVGAKW 266 (1189)
T ss_pred ceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeE---------EecccEeeccee
Confidence 1100000 011235778899
Q ss_pred ccCCCcEEEEEeCCC---------cEEEEecCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 231 SPTHTGMLAIGSYSQ---------TSAIYREDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 231 sp~~~~~l~~~~~dg---------~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
++ +|.+|+.++.+. .|.+|. .-|+.+.+++.....|++++|-..|
T Consensus 267 nh-~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 267 NH-NGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred cC-CCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCc
Confidence 99 999999887543 455554 4567788888888889999987655
No 295
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=9.1e-07 Score=74.93 Aligned_cols=151 Identities=11% Similarity=0.097 Sum_probs=105.2
Q ss_pred eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (279)
|+-|+. +++.+.+|...|+|.+-|..+.+... ....|.+.|.++ +-.|+.|+
T Consensus 180 v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~ih-----------------t~~aHs~siSDf---------Dv~GNlLi 231 (1118)
T KOG1275|consen 180 VTIMRY--NNRNLFCGDTRGTVFLRDPNSFETIH-----------------TFDAHSGSISDF---------DVQGNLLI 231 (1118)
T ss_pred eEEEEe--cCcEEEeecccceEEeecCCcCceee-----------------eeeccccceeee---------eccCCeEE
Confidence 554543 57889999999999999998653321 223455566555 44788999
Q ss_pred EecC---------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEEEEecCCeEEEEEccCCCCceeee
Q 023672 143 STTR---------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAGYNKSVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 143 s~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~d~~i~~~d~~~~~~~~~~~ 211 (279)
+|+. |..|+|||++.-+.+..+..+.. ..-+.|+|.- +.++++..|...+-|..+-+.+....
T Consensus 232 tCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~------P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~ 305 (1118)
T KOG1275|consen 232 TCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG------PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGV 305 (1118)
T ss_pred EeecccccccccccchhhhhhhhhhhccCCcccccC------chhhhhcccccceEEEEecccceeeccccccCCCccce
Confidence 8865 56789999998877776666553 2457888873 34446689999999944322222222
Q ss_pred eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
..+ ......+..+++|+ +++.|+.|..+|.|.+|--
T Consensus 306 ~~v----~p~~s~i~~fDiSs-n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 306 KMV----NPNGSGISAFDISS-NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eEE----ccCCCcceeEEecC-CCceEEEecccCcEeeecC
Confidence 122 22244599999999 9999999999999999973
No 296
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.69 E-value=7.3e-08 Score=86.72 Aligned_cols=151 Identities=17% Similarity=0.304 Sum_probs=105.9
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (279)
..|+.+.|+.+|+.+..+..||.+.+|........ -..-|.....++.|- +..
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~------------------s~qchnk~~~Df~Fi---------~s~ 2304 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYT------------------SWQCHNKALSDFRFI---------GSL 2304 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCccee------------------ccccCCccccceeee---------ehh
Confidence 77899999999999999999999999998732110 112234455566552 124
Q ss_pred EEEe---cCCCcEEEEECCCCeeeE-EEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecc
Q 023672 141 FAST---TRDHPIHLWDATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLK 215 (279)
Q Consensus 141 l~s~---~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~ 215 (279)
++++ +.++.+.+||..-..... .-..|.. .++++++-|..+.+++| .+|.|++||++.. +....+
T Consensus 2305 ~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~-----gaT~l~~~P~~qllisggr~G~v~l~D~rqr----ql~h~~- 2374 (2439)
T KOG1064|consen 2305 LATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG-----GATVLAYAPKHQLLISGGRKGEVCLFDIRQR----QLRHTF- 2374 (2439)
T ss_pred hhccccCCCCCcccchhcccCcccceeeeecCC-----CceEEEEcCcceEEEecCCcCcEEEeehHHH----HHHHHh-
Confidence 5554 456789999975432211 1144444 88999999999999976 9999999999972 111122
Q ss_pred cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
+. +. ...++++|+..|.|+||++..-.++.+++
T Consensus 2375 --------~~----~~--~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2375 --------QA----LD--TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred --------hh----hh--hhheeeccCcccceEEEEccccchhhcCc
Confidence 11 32 35689999999999999999887777665
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=9.8e-07 Score=67.98 Aligned_cols=82 Identities=23% Similarity=0.437 Sum_probs=64.8
Q ss_pred eeecCCCceEEEEeeCcccccCCCCc-EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEe
Q 023672 114 LVVTEGESVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAG 191 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 191 (279)
+...++..|.+++| +|..+ ++..++.+.+|+|.|+++...+..+..+. .+++++|.-+. ++|++|
T Consensus 188 ~lp~~g~~Irdlaf-------Sp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~------~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAF-------SPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYN------QIWSCCWDLDERHVIYAG 254 (463)
T ss_pred cccccchhhhhhcc-------CccccceeeeeccCceEEEEecccceeeeheeccC------CceeeeeccCCcceeEEe
Confidence 33445556777665 55554 78899999999999999999888888775 89999999876 556689
Q ss_pred -cCCeEEEEEccCCCCce
Q 023672 192 -YNKSVRVFDVHRPGRDF 208 (279)
Q Consensus 192 -~d~~i~~~d~~~~~~~~ 208 (279)
..|.|.+||++.+..++
T Consensus 255 l~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 255 LQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred ccCceEEEEEccCCCchH
Confidence 99999999999864443
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.65 E-value=1.1e-07 Score=78.58 Aligned_cols=184 Identities=11% Similarity=0.130 Sum_probs=113.6
Q ss_pred ccCCCCCceEEEEEccCC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
.+.||..+|+.+-|+|.. ..|++++.|-.+..||++.... +.......+ .....+.|+-.
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---------------p~ys~~~w~-s~asqVkwnyk--- 169 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---------------PFYSTSSWR-SAASQVKWNYK--- 169 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---------------ceeeeeccc-ccCceeeeccc---
Confidence 577999999999999954 5889999999999999985421 111122222 23445666322
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEEECCC--CCEEEEecCCeEEEEEccCCCCceee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVAFNPT--GTKIFAGYNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~d~~i~~~d~~~~~~~~~~ 210 (279)
++ .+.+.+..+.|++||++.| .++..++.+.. .|+.+.|..- +..+.++.|++|+.||........+.
T Consensus 170 ---~p-~vlasshg~~i~vwd~r~gs~pl~s~K~~vs-----~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~ 240 (1081)
T KOG0309|consen 170 ---DP-NVLASSHGNDIFVWDLRKGSTPLCSLKGHVS-----SVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKR 240 (1081)
T ss_pred ---Cc-chhhhccCCceEEEeccCCCcceEEecccce-----eeehHHHhhhhhhhhcccCCCCceeeecccccccccce
Confidence 33 3444556778999999876 56677776554 8888888764 23333559999999999864332222
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEeC----------CCcEEEEecCC-CeEEEEEeecCCCEEEEEE
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY----------SQTSAIYREDN-MELLYVLHGQEGGVTHVSK 273 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~----------dg~i~~wd~~~-~~~~~~~~~~~~~v~~~~~ 273 (279)
.. ....+|..-++-|.+..+.+.-.. +.....|+..+ ..++.++.+|.+.|....|
T Consensus 241 ~v-------tt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlW 307 (1081)
T KOG0309|consen 241 TV-------TTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLW 307 (1081)
T ss_pred ec-------cccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhh
Confidence 11 223456666666633333332221 22223344433 3578999999886654433
No 299
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.64 E-value=4.7e-07 Score=65.75 Aligned_cols=75 Identities=13% Similarity=0.312 Sum_probs=59.1
Q ss_pred CceEEEEEccC-CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 61 NFLKGIKWSPD-GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 61 ~~v~~~~~~~~-~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
+.|.+++-+|. ...+++|+.||.+.+||.+.... ...+...|..+++.+.|+|. ++.
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~----------------p~S~l~ahk~~i~eV~FHpk------~p~ 237 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM----------------PVSLLKAHKAEIWEVHFHPK------NPE 237 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccc----------------hHHHHHHhhhhhhheeccCC------Cch
Confidence 34999999994 45677899999999999986522 11244556778999999887 556
Q ss_pred EEEEecCCCcEEEEECCC
Q 023672 140 VFASTTRDHPIHLWDATT 157 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~ 157 (279)
.|++++.||.+-.||..+
T Consensus 238 ~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 238 HLFTCSEDGSLWHWDAST 255 (319)
T ss_pred heeEecCCCcEEEEcCCC
Confidence 899999999999999765
No 300
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.63 E-value=5.2e-06 Score=66.74 Aligned_cols=161 Identities=12% Similarity=0.159 Sum_probs=102.8
Q ss_pred EEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (279)
Q Consensus 64 ~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 143 (279)
+-+.|||.|.+|+|-..-| |.+|--..-.. ...+.|. .|.-+ .|||+.++|++
T Consensus 214 tyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r------------------~~RF~Hp-~Vq~i-------dfSP~EkYLVT 266 (698)
T KOG2314|consen 214 TYVRWSPKGTYLVTFHKQG-IALWGGESFDR------------------IQRFYHP-GVQFI-------DFSPNEKYLVT 266 (698)
T ss_pred eeEEecCCceEEEEEeccc-eeeecCccHHH------------------HHhccCC-Cceee-------ecCCccceEEE
Confidence 5689999999999988766 78885443211 1122232 23333 45788888887
Q ss_pred ecC-----------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672 144 TTR-----------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 144 ~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~ 212 (279)
=+. ...+.|||+++|...+.+........ .-.-..||.|++++|.-....|.||+...- ..
T Consensus 267 ~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~--~WP~frWS~DdKy~Arm~~~sisIyEtpsf----~l-- 338 (698)
T KOG2314|consen 267 YSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYL--KWPIFRWSHDDKYFARMTGNSISIYETPSF----ML-- 338 (698)
T ss_pred ecCCccccCcccCCCceEEEEEccccchhcceeccCCCcc--ccceEEeccCCceeEEeccceEEEEecCce----ee--
Confidence 542 25799999999999988887532111 112368999999999655578899887641 11
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCeEEEEEe
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNMELLYVLH 262 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~~~~~~~ 262 (279)
.....-.-..|....|+| .+.+||-=... ..+.|-.+.+++.+.+..
T Consensus 339 --ld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt~n 390 (698)
T KOG2314|consen 339 --LDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRTKN 390 (698)
T ss_pred --ecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeeecc
Confidence 111122234688899999 78888754322 236666666666555443
No 301
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=4.2e-06 Score=64.63 Aligned_cols=80 Identities=13% Similarity=0.240 Sum_probs=63.0
Q ss_pred ccCCCCCceEEEEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
.+.+|...|..++|+|..+ ++..++.+.+|+|.|+++.... ........+++++|.-+
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v------------------ssy~a~~~~wSC~wDld--- 246 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV------------------SSYIAYNQIWSCCWDLD--- 246 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceee------------------eheeccCCceeeeeccC---
Confidence 6778889999999999777 7789999999999999864321 11222368999999433
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCC
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTG 158 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~ 158 (279)
+.++|+.|...|.|.+||++..
T Consensus 247 ---e~h~IYaGl~nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 247 ---ERHVIYAGLQNGMVLVYDMRQP 268 (463)
T ss_pred ---CcceeEEeccCceEEEEEccCC
Confidence 4668899999999999999864
No 302
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.56 E-value=4.8e-06 Score=66.17 Aligned_cols=184 Identities=11% Similarity=0.120 Sum_probs=115.6
Q ss_pred CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
..-++..++|||.|.+|++.... -|.+|.-..... .....+ ..|..+. |+|++
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~------------------l~~~~~-~~V~~~~-------fSP~~ 83 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAK------------------LVRFRH-PDVKYLD-------FSPNE 83 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhh------------------eeeeec-CCceecc-------cCccc
Confidence 44568899999999999987765 488898764321 122222 2455554 47788
Q ss_pred cEEEEecCC---------------CcEEEEECCCCeeeEEEeccCcccccccee-eEEECCCCCEEEEecCCeEEEEEcc
Q 023672 139 CVFASTTRD---------------HPIHLWDATTGLLRCTYRAYDAVDEITAAF-SVAFNPTGTKIFAGYNKSVRVFDVH 202 (279)
Q Consensus 139 ~~l~s~~~d---------------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~d~~i~~~d~~ 202 (279)
.+|.+=+.. ..+.+||+.++..+..+....... ..+ -+.|+-+.++++--....++++++
T Consensus 84 kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~---~~Wp~~k~s~~D~y~ARvv~~sl~i~e~- 159 (561)
T COG5354 84 KYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPY---LGWPVLKFSIDDKYVARVVGSSLYIHEI- 159 (561)
T ss_pred ceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcc---cccceeeeeecchhhhhhccCeEEEEec-
Confidence 888876543 359999999999998888765421 123 578888888877335667999997
Q ss_pred CCCCceeeeeecccccCCCCCceEEEEEccC-CCcEEEE-----EeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccC
Q 023672 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT-HTGMLAI-----GSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~~l~~-----~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spd 276 (279)
++.-.......+ ....+....|+|. ++..|+. .+.++.+++|.+..+..+.+-.-..-.=..+.|++.
T Consensus 160 t~n~~~~p~~~l------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~ 233 (561)
T COG5354 160 TDNIEEHPFKNL------RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVL 233 (561)
T ss_pred CCccccCchhhc------cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecC
Confidence 322111111111 1246888899993 2333443 356778999999877655433222211234777777
Q ss_pred CCC
Q 023672 277 AYT 279 (279)
Q Consensus 277 g~~ 279 (279)
|.|
T Consensus 234 g~~ 236 (561)
T COG5354 234 GKY 236 (561)
T ss_pred Cce
Confidence 654
No 303
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.54 E-value=2.8e-06 Score=68.89 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=60.5
Q ss_pred CCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672 57 SIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (279)
Q Consensus 57 ~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (279)
......|.|++++|+...|+.|+.||+|.+||...+.. ......+.|..++++|
T Consensus 256 ipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t--------------------------~~~ka~~~P~~iaWHp 309 (545)
T PF11768_consen 256 IPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT--------------------------LLAKAEFIPTLIAWHP 309 (545)
T ss_pred EecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee--------------------------eeeeecccceEEEEcC
Confidence 35677899999999999999999999999999875421 1112234455566688
Q ss_pred CCcEEEEecCCCcEEEEECCCC
Q 023672 137 TSCVFASTTRDHPIHLWDATTG 158 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~ 158 (279)
+|.++++|+..|.+.+||+.-+
T Consensus 310 ~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 310 DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred CCcEEEEEcCCceEEEEEeecC
Confidence 9999999999999999999654
No 304
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.50 E-value=3.4e-05 Score=67.81 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=70.9
Q ss_pred cccCCCCcEEEEe-----cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE----ecCCeEEEEEcc
Q 023672 132 SASDPTSCVFAST-----TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA----GYNKSVRVFDVH 202 (279)
Q Consensus 132 ~~~~~~~~~l~s~-----~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~d~~i~~~d~~ 202 (279)
+.|--||.++|+. ..-+.|++||-+ |..-..-..... .=.+++|-|.|..+++ +.|+.|.+|.-+
T Consensus 201 IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~-----l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 201 ISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEG-----LQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred EEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccc-----cccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 3456788888884 223789999976 443222111111 2247999999999984 256778888765
Q ss_pred CCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEE---EeCCCcEEEEecCCCe
Q 023672 203 RPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAI---GSYSQTSAIYREDNME 256 (279)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~---~~~dg~i~~wd~~~~~ 256 (279)
.- +. ..+.-........+..++|+. ++.+|++ ......|++|-+.+-.
T Consensus 275 GL-~h----g~f~l~~p~de~~ve~L~Wns-~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 275 GL-RH----GEFVLPFPLDEKEVEELAWNS-NSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred Cc-cc----cccccCCcccccchheeeecC-CCCceeeeecccccceEEEEEecCeE
Confidence 31 11 111111122233489999999 8999988 5555569999887653
No 305
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.49 E-value=3.8e-08 Score=79.88 Aligned_cols=172 Identities=15% Similarity=0.229 Sum_probs=109.7
Q ss_pred eccCCCCCceEEEEEcc-CCCeEEEee----CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEee
Q 023672 54 RTSSIPNNFLKGIKWSP-DGSSFLTSS----EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (279)
Q Consensus 54 ~~~~~h~~~v~~~~~~~-~~~~l~t~~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (279)
....+|....++++|++ |.+.||.|- .|-.+.|||+.++-...... .. +.........++||
T Consensus 96 E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~-~~-----------fs~~~l~gqns~cw- 162 (783)
T KOG1008|consen 96 EVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKES-PL-----------FSSSTLDGQNSVCW- 162 (783)
T ss_pred eecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccc-cc-----------cccccccCcccccc-
Confidence 36677888999999998 667787764 36779999998753211000 00 11112233446777
Q ss_pred CcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC-CCCEEEEecCCeEEEEE-ccCCCC
Q 023672 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFD-VHRPGR 206 (279)
Q Consensus 129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d~~i~~~d-~~~~~~ 206 (279)
..+.+.+.+|.....+.++|++.... ........ .+..+...| .+.++++..|+.|.+|| .+.-..
T Consensus 163 ------lrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnTk-----~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnien 230 (783)
T KOG1008|consen 163 ------LRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNTK-----YVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIEN 230 (783)
T ss_pred ------ccCcchhhcccccchhhhhhhhhhhh-hhhhhhhh-----hcccceecCCCCCceeccccCceeeccchhhhcc
Confidence 45778899999999999999984322 11112222 456788888 67787777899999999 444222
Q ss_pred ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-CCcEEEEecC
Q 023672 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQTSAIYRED 253 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~i~~wd~~ 253 (279)
++..+ ..........+..++|.|.....+++... .++|+++|+.
T Consensus 231 pl~~i---~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 231 PLQII---LRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred HHHHH---hhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 22222 11111122358899999965556666654 4679999985
No 306
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.48 E-value=4e-05 Score=62.40 Aligned_cols=69 Identities=19% Similarity=0.256 Sum_probs=56.0
Q ss_pred ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
.|.+++++|+...++.| .||.|.+||...+-... ....-.++.++|+| +|.++++|+..|.+.+||+.
T Consensus 261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~----------~ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLL----------AKAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cceEEecCcccceEEEEecCCeEEEEEcCCCeeee----------eeecccceEEEEcC-CCcEEEEEcCCceEEEEEee
Confidence 78899999999888866 99999999998731111 11233578899999 99999999999999999985
Q ss_pred C
Q 023672 254 N 254 (279)
Q Consensus 254 ~ 254 (279)
-
T Consensus 330 L 330 (545)
T PF11768_consen 330 L 330 (545)
T ss_pred c
Confidence 4
No 307
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.47 E-value=4.4e-05 Score=68.09 Aligned_cols=183 Identities=15% Similarity=0.166 Sum_probs=115.9
Q ss_pred CCCceEEEEEccCCCeEEEeeCCCeEEEE----eCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIF----SLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
..+.|.++.|-++...++.+..+|.|.+. +..+... .+...-...|.+.+|
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~------------------E~VG~vd~GI~a~~W------- 128 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI------------------EIVGSVDSGILAASW------- 128 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee------------------EEEEEEcCcEEEEEE-------
Confidence 44679999999999999999999999999 4443211 122233356888888
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEe----------------------ccCccc---------------------
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYR----------------------AYDAVD--------------------- 171 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~----------------------~~~~~~--------------------- 171 (279)
|||+..|+..+.+++|.+..- +..++.... .++..+
T Consensus 129 SPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s 207 (928)
T PF04762_consen 129 SPDEELLALVTGEGNLLLMTR-DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS 207 (928)
T ss_pred CCCcCEEEEEeCCCEEEEEec-cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc
Confidence 778999999988888876542 222211110 000000
Q ss_pred cccceeeEEECCCCCEEEEe-c---C---CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-
Q 023672 172 EITAAFSVAFNPTGTKIFAG-Y---N---KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY- 243 (279)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~-~---d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~- 243 (279)
....-..|+|-.||.+++++ . . ..++||+-.. ....+. +.-.+--.+++|.| .|.++|+...
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG-----~L~stS----E~v~gLe~~l~WrP-sG~lIA~~q~~ 277 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREG-----ELQSTS----EPVDGLEGALSWRP-SGNLIASSQRL 277 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCc-----eEEecc----ccCCCccCCccCCC-CCCEEEEEEEc
Confidence 00123478999999999943 2 2 5789998872 111111 12223344789999 9999998764
Q ss_pred --CCcEEEEecCCCeEEEEEee----cCCCEEEEEEccCCC
Q 023672 244 --SQTSAIYREDNMELLYVLHG----QEGGVTHVSKLSSAY 278 (279)
Q Consensus 244 --dg~i~~wd~~~~~~~~~~~~----~~~~v~~~~~spdg~ 278 (279)
...|.+|. ++|-....|.- ....|..|+|++|+.
T Consensus 278 ~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~ 317 (928)
T PF04762_consen 278 PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSE 317 (928)
T ss_pred CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCC
Confidence 33466676 56654444432 345899999999974
No 308
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.45 E-value=1.7e-05 Score=68.32 Aligned_cols=132 Identities=14% Similarity=0.168 Sum_probs=89.2
Q ss_pred CCcEEEEe-cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-------CEEEEe-cCCeEEEEEccCCCCc
Q 023672 137 TSCVFAST-TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-------TKIFAG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 137 ~~~~l~s~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-------~~l~~~-~d~~i~~~d~~~~~~~ 207 (279)
+..+|+.. .....|+-.|++.|+.+.....+... +| ..|.|+. ...+.| .+..+..||.|-.+..
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~----~v--~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k 565 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDI----PV--VDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK 565 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCc----ce--eEecccccccccCCCceEEEECCCceEEeccCCCCCc
Confidence 34444443 34678999999999999999987741 23 3444532 234456 8899999999975422
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
.. ...... -.......|++-+. +| +||.|+.+|.||+||--..+....|++...+|.+|..+.||+|
T Consensus 566 ~v--~~~~k~-Y~~~~~Fs~~aTt~-~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw 632 (794)
T PF08553_consen 566 LV--DSQSKQ-YSSKNNFSCFATTE-DG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW 632 (794)
T ss_pred ee--eccccc-cccCCCceEEEecC-Cc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE
Confidence 21 111001 12344567777766 44 7999999999999995433444567777889999999999986
No 309
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.44 E-value=0.00028 Score=52.53 Aligned_cols=153 Identities=14% Similarity=0.219 Sum_probs=86.3
Q ss_pred EEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCC-ceEEEEeeCcccccCCCCcEEEEe
Q 023672 66 IKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGE-SVYDFCWFPHMSASDPTSCVFAST 144 (279)
Q Consensus 66 ~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~l~s~ 144 (279)
++.+.+|+.||..- |..|.|-..+..-. .....+. ...... .=..++| |||+.+||.+
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~-si~~kcq------------VpkD~~PQWRkl~W-------SpD~tlLa~a 61 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFS-SIIGKCQ------------VPKDPNPQWRKLAW-------SPDCTLLAYA 61 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCch-heeEEEe------------cCCCCCchheEEEE-------CCCCcEEEEE
Confidence 56678898777554 66777766543211 0001111 011111 1233444 8899999999
Q ss_pred cCCCcEEEEECCCCeeeEEEeccCc--cccccceeeEEECCCC-------CEEEEecCCeEEEEEccCC-CCceeeeeec
Q 023672 145 TRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTG-------TKIFAGYNKSVRVFDVHRP-GRDFEKYSTL 214 (279)
Q Consensus 145 ~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~-------~~l~~~~d~~i~~~d~~~~-~~~~~~~~~~ 214 (279)
...|+|+++|+.... +..+..... ......|..+.|-+-. .+|+...+|.++=|-+..+ .+.+.....+
T Consensus 62 ~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf 140 (282)
T PF15492_consen 62 ESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF 140 (282)
T ss_pred cCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE
Confidence 999999999997543 334333221 1112356677775432 3445668888887776331 2333333333
Q ss_pred ccccCCCCCceEEEEEccCCCcEEEEEe
Q 023672 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGS 242 (279)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~ 242 (279)
.-. ..+...|.++.++| ..++|+.|+
T Consensus 141 sf~-~~yp~Gi~~~vy~p-~h~LLlVgG 166 (282)
T PF15492_consen 141 SFS-SHYPHGINSAVYHP-KHRLLLVGG 166 (282)
T ss_pred Eec-ccCCCceeEEEEcC-CCCEEEEec
Confidence 211 23466899999999 767766664
No 310
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.41 E-value=0.00037 Score=52.84 Aligned_cols=174 Identities=20% Similarity=0.226 Sum_probs=99.3
Q ss_pred EEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC-CCCcEEE
Q 023672 65 GIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD-PTSCVFA 142 (279)
Q Consensus 65 ~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~l~ 142 (279)
++.|.+ ++.++++-...+.|..|+..++... ...... ...+. +. +++.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~-------------------~~~~~~-~~G~~-------~~~~~g~l~- 55 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVE-------------------VIDLPG-PNGMA-------FDRPDGRLY- 55 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEE-------------------EEESSS-EEEEE-------EECTTSEEE-
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEE-------------------EEecCC-CceEE-------EEccCCEEE-
Confidence 578888 6777777777899999999865331 111111 22332 34 455444
Q ss_pred EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC--------CeEEEEEccCCCCceeeeee
Q 023672 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN--------KSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d--------~~i~~~d~~~~~~~~~~~~~ 213 (279)
.+...+ +.++|+.+++................++.+++.|+|++.++. .. +.|..++.. +. ....
T Consensus 56 v~~~~~-~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~--~~-~~~~-- 129 (246)
T PF08450_consen 56 VADSGG-IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD--GK-VTVV-- 129 (246)
T ss_dssp EEETTC-EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT--SE-EEEE--
T ss_pred EEEcCc-eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC--Ce-EEEE--
Confidence 444444 556699998765555442221122378899999999977753 22 345555555 11 1111
Q ss_pred cccccCCCCCceEEEEEccCCCc-EEEEEeCCCcEEEEecCCC-e-E--EEEE---eecCCCEEEEEEccCCC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTG-MLAIGSYSQTSAIYREDNM-E-L--LYVL---HGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~-~l~~~~~dg~i~~wd~~~~-~-~--~~~~---~~~~~~v~~~~~spdg~ 278 (279)
. ..-...+.++|+| ++. ++++-+..+.|..+++... . . ...+ ....+..-++++..+|+
T Consensus 130 ~-----~~~~~pNGi~~s~-dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~ 196 (246)
T PF08450_consen 130 A-----DGLGFPNGIAFSP-DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN 196 (246)
T ss_dssp E-----EEESSEEEEEEET-TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-
T ss_pred e-----cCcccccceEECC-cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC
Confidence 1 1123478999999 665 5556777888999998632 1 1 1222 22222367788887775
No 311
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.40 E-value=6.6e-05 Score=57.23 Aligned_cols=135 Identities=16% Similarity=0.176 Sum_probs=93.8
Q ss_pred ccCC-CCcEEEEecCCCc-EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c-----CCeEEEEEccCC
Q 023672 133 ASDP-TSCVFASTTRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-----NKSVRVFDVHRP 204 (279)
Q Consensus 133 ~~~~-~~~~l~s~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-----d~~i~~~d~~~~ 204 (279)
+.+| ....++.+-.-|+ ..+||.++++....+....... .--.-.|++||++|++. . .|.|-|||....
T Consensus 11 a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH---FyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 11 AAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH---FYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred eeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE---EecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 3355 4556777777765 5689999999888776654422 12257899999999975 3 478999999842
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe------------------CCCcEEEEecCCCeEEEE--E--e
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS------------------YSQTSAIYREDNMELLYV--L--H 262 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~------------------~dg~i~~wd~~~~~~~~~--~--~ 262 (279)
+..+.++ ..|.-....+.+.| ++..|+.+. .+-++.+-|..+|+++.. + .
T Consensus 88 ---~~ri~E~----~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~ 159 (305)
T PF07433_consen 88 ---YRRIGEF----PSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD 159 (305)
T ss_pred ---cEEEeEe----cCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence 2333333 45555567788999 776666552 123566778889998876 4 2
Q ss_pred ecCCCEEEEEEccCCC
Q 023672 263 GQEGGVTHVSKLSSAY 278 (279)
Q Consensus 263 ~~~~~v~~~~~spdg~ 278 (279)
.|.-.|+.|++.+||.
T Consensus 160 ~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 160 LHQLSIRHLAVDGDGT 175 (305)
T ss_pred ccccceeeEEecCCCc
Confidence 3667899999999985
No 312
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.40 E-value=5.4e-05 Score=60.44 Aligned_cols=175 Identities=15% Similarity=0.191 Sum_probs=104.3
Q ss_pred CceEEEEEccCC--CeEE-----EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 61 NFLKGIKWSPDG--SSFL-----TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 61 ~~v~~~~~~~~~--~~l~-----t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
..|....|+|.+ ..|| ....++.++||.+..+......+... ..-..+.|
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk-----------------~~~~qLkW------ 230 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFK-----------------VSGVQLKW------ 230 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEe-----------------ecccEEEE------
Confidence 457778888853 3344 24567888888887433211110000 01122334
Q ss_pred cCCCCcEEEEec-----------CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--Ee-cCCeEEEE
Q 023672 134 SDPTSCVFASTT-----------RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AG-YNKSVRVF 199 (279)
Q Consensus 134 ~~~~~~~l~s~~-----------~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~-~d~~i~~~ 199 (279)
++.|.+++.-- ....+.|+++....+.... .-.. +|...+|.|.++.++ +| .+..+.++
T Consensus 231 -~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~-----pVhdf~W~p~S~~F~vi~g~~pa~~s~~ 303 (561)
T COG5354 231 -QVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKD-----PVHDFTWEPLSSRFAVISGYMPASVSVF 303 (561)
T ss_pred -ecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccc-----cceeeeecccCCceeEEecccccceeec
Confidence 44455443321 1245778887643322222 2222 899999999987776 56 88999999
Q ss_pred EccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeE-EEEEeecCCCEEEEEEcc
Q 023672 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMEL-LYVLHGQEGGVTHVSKLS 275 (279)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~-~~~~~~~~~~v~~~~~sp 275 (279)
|++.+ .... .....-..+-|+| .+++++.++-| |.|-+||....-. +..+.+.+ .+-+.|+|
T Consensus 304 ~lr~N-----l~~~------~Pe~~rNT~~fsp-~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wsp 369 (561)
T COG5354 304 DLRGN-----LRFY------FPEQKRNTIFFSP-HERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSP 369 (561)
T ss_pred ccccc-----eEEe------cCCcccccccccC-cccEEEEecCCccccceEEeccCCceEEEEEeecCC--ceEeeccC
Confidence 99973 1111 1223345678999 88888887655 4699999876543 33666543 45678999
Q ss_pred CCCC
Q 023672 276 SAYT 279 (279)
Q Consensus 276 dg~~ 279 (279)
||+|
T Consensus 370 d~qF 373 (561)
T COG5354 370 DGQF 373 (561)
T ss_pred CceE
Confidence 9975
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.37 E-value=4.4e-05 Score=63.65 Aligned_cols=110 Identities=13% Similarity=0.064 Sum_probs=74.0
Q ss_pred CCCCcEEEEecCCCcEEEEECCC-----CeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCc
Q 023672 135 DPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~ 207 (279)
.++|++... .++.|.+.|.++ .+.+..+.... .+..+.++|||++++ ++ .+.++.|+|+.+....
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIPVGK------sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~ 356 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVPVPK------NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL 356 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEECCC------CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence 445555544 256799999988 35555565554 678999999999998 55 8999999999873211
Q ss_pred e----eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 208 F----EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 208 ~----~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
+ +....+.....- .......+|.+ +|..+.+--.|..|..||+.+
T Consensus 357 ~~~~~~~~~~vvaevev-GlGPLHTaFDg-~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 357 FDGKIKPRDAVVAEPEL-GLGPLHTAFDG-RGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhccCCccceEEEeecc-CCCcceEEECC-CCCEEEeEeecceeEEEehHH
Confidence 1 111111111111 22345678999 788888888899999999876
No 314
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.36 E-value=3.2e-05 Score=62.81 Aligned_cols=179 Identities=17% Similarity=0.147 Sum_probs=98.0
Q ss_pred CCceEEEEEccCCCeEEEe---eCC-CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672 60 NNFLKGIKWSPDGSSFLTS---SED-KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~---~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (279)
...+..-+|+|+++.++.. ... ..+.+++++++.... +..........+|+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~-------------------------i~~~~g~~~~P~fs 246 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV-------------------------ILNFNGNNGAPAFS 246 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce-------------------------eeccCCccCCccCC
Confidence 3456667888888866533 222 357888887654321 11111111223679
Q ss_pred CCCcEEEEe-cCCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceee
Q 023672 136 PTSCVFAST-TRDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 136 ~~~~~l~s~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~ 210 (279)
|||+.|+.+ ..|+ .|.++|+.+++..+ +..... .-..-.|+|+|+.++ ++ ..|.-.||-....+.....
T Consensus 247 pDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~g-----i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 247 PDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFG-----INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCc-----cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 999887766 4455 46777888776433 332222 223678999999988 55 6665555544433332222
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEeC-CCc--EEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-SQT--SAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-dg~--i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+ +. . .+.-..-.|+| +|.+|+..+. +|. |.+.|+.++.....+. .........|.|+|+
T Consensus 321 i-T~----~--~~~~~~p~~Sp-dG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~ 382 (425)
T COG0823 321 L-TF----S--GGGNSNPVWSP-DGDKIVFESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGR 382 (425)
T ss_pred e-ec----c--CCCCcCccCCC-CCCEEEEEeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCc
Confidence 2 11 1 11122678999 7777776654 344 6777776665443333 222233444555553
No 315
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.36 E-value=1.4e-05 Score=66.99 Aligned_cols=123 Identities=13% Similarity=0.124 Sum_probs=95.1
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe----c------CCeEEEEEccCCCCcee
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----Y------NKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~------d~~i~~~d~~~~~~~~~ 209 (279)
++|.|...|+|.++|+.++.....+..|.. .|.++.|-....++..+ . -+.+.+-|++++-.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~-----~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGls--- 510 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTS-----LVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS--- 510 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhccccc-----ceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccc---
Confidence 578899999999999999998888888887 89999998887776522 1 24577889998421
Q ss_pred eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCC-EEEEEEc
Q 023672 210 KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGG-VTHVSKL 274 (279)
Q Consensus 210 ~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s 274 (279)
..+....+....+|..+..|. .+.+|+..-.+.-+.+||+++..++..... .-+ ++.+.|+
T Consensus 511 --k~fR~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~~lr~mS~-a~P~it~leWs 572 (1062)
T KOG1912|consen 511 --KRFRGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLRMLRLMSL-ALPLITVLEWS 572 (1062)
T ss_pred --cccccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccchHHHHHhh-cCCcEEEEeec
Confidence 122222245567899999999 999999999999999999998877654442 334 8888888
No 316
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.35 E-value=1.6e-07 Score=76.40 Aligned_cols=184 Identities=15% Similarity=0.212 Sum_probs=114.8
Q ss_pred CCceEEEEEccCC--CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672 60 NNFLKGIKWSPDG--SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 60 ~~~v~~~~~~~~~--~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (279)
...+.|+++.-+. ..+++|..+|.|.+-.+....-. ...+...+....++++|++. |
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS---------------s~E~tp~~ar~Ct~lAwneL------D 114 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS---------------SAEVTPGYARPCTSLAWNEL------D 114 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc---------------cceecccccccccccccccc------c
Confidence 3557888886643 47789999999999887743211 11233445567778888553 5
Q ss_pred CcEEEEec----CCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672 138 SCVFASTT----RDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 138 ~~~l~s~~----~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~ 210 (279)
.++||.|- .|..+.|||+.++ .+......... ......+++|..+.+++.+| ....+.++|++........
T Consensus 115 tn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s 192 (783)
T KOG1008|consen 115 TNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS 192 (783)
T ss_pred HHHHHhhhhhhcccCCccceecccccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh
Confidence 66777763 3668999999887 22222211111 11145588999888888888 7789999999952111111
Q ss_pred eeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe-cCCCe-EEEEEeecCC----CEEEEEEccC
Q 023672 211 YSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR-EDNME-LLYVLHGQEG----GVTHVSKLSS 276 (279)
Q Consensus 211 ~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd-~~~~~-~~~~~~~~~~----~v~~~~~spd 276 (279)
-.+..+..+..+|-.+.++++-. ||.|.+|| .++-+ ++..+..... .+..++|+|.
T Consensus 193 ---------vnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPt 254 (783)
T KOG1008|consen 193 ---------VNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPT 254 (783)
T ss_pred ---------hhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccC
Confidence 11224566777776667777665 99999999 44433 2222221122 3788888884
No 317
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.35 E-value=0.00018 Score=58.30 Aligned_cols=110 Identities=13% Similarity=0.127 Sum_probs=70.5
Q ss_pred CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeeccc
Q 023672 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
+..++.++.++.+..+|..+++.+....... ...... .+..++ ...+|.+..+|..++. .......+
T Consensus 241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-------~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~-~~W~~~~~-- 308 (377)
T TIGR03300 241 GGQVYAVSYQGRVAALDLRSGRVLWKRDASS-------YQGPAV--DDNRLYVTDADGVVVALDRRSGS-ELWKNDEL-- 308 (377)
T ss_pred CCEEEEEEcCCEEEEEECCCCcEEEeeccCC-------ccCceE--eCCEEEEECCCCeEEEEECCCCc-EEEccccc--
Confidence 4467778889999999999998776655221 112222 344555 4489999999998742 21111011
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG 266 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~ 266 (279)
.. ....+... .+..|++++.+|.|+++|..+++.+..++.+..
T Consensus 309 --~~--~~~ssp~i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~ 351 (377)
T TIGR03300 309 --KY--RQLTAPAV---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS 351 (377)
T ss_pred --cC--CccccCEE---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC
Confidence 11 11122222 245788889999999999999999988876553
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=0.00011 Score=61.97 Aligned_cols=166 Identities=14% Similarity=0.096 Sum_probs=99.5
Q ss_pred ccCCCCCceEEEEEcc-------------CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCc
Q 023672 55 TSSIPNNFLKGIKWSP-------------DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGES 121 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~-------------~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (279)
.+..|.+.|.-..+.- +|.+++|||.||+|.|-.+-+.... ....-..+
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~~~------------------~~~df~rp 114 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDDEI------------------TQYDFKRP 114 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCccc------------------eeEecCCc
Confidence 4555666655555433 4999999999999999888754321 11222357
Q ss_pred eEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-CeeeE-EEeccCccccccceeeEEECCCCCEEEEecCCeEEEE
Q 023672 122 VYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-GLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF 199 (279)
Q Consensus 122 v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~ 199 (279)
+.+++++|+-. -...+.+++|+.-| +.++.-+= |.... .+.... ++|.++.|. |++++-..|-.|++|
T Consensus 115 iksial~Pd~~--~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e-----G~I~~i~W~--g~lIAWand~Gv~vy 184 (846)
T KOG2066|consen 115 IKSIALHPDFS--RQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE-----GPIHSIKWR--GNLIAWANDDGVKVY 184 (846)
T ss_pred ceeEEeccchh--hhhhhheeecCcce-EEEehhhhhcCccceeeecCc-----cceEEEEec--CcEEEEecCCCcEEE
Confidence 77787766521 12356788999888 76665321 11111 222222 289999996 678887888889999
Q ss_pred EccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 200 DVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
|..+. +.+..+... ............+.|.+ +. .|+.|=. .+|+|..++
T Consensus 185 d~~~~-~~l~~i~~p-~~~~R~e~fpphl~W~~-~~-~LVIGW~-d~v~i~~I~ 233 (846)
T KOG2066|consen 185 DTPTR-QRLTNIPPP-SQSVRPELFPPHLHWQD-ED-RLVIGWG-DSVKICSIK 233 (846)
T ss_pred ecccc-ceeeccCCC-CCCCCcccCCCceEecC-CC-eEEEecC-CeEEEEEEe
Confidence 99873 222111111 01112233456788987 44 4555543 458888776
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.25 E-value=0.00013 Score=54.97 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=74.4
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccc
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
++..+++++.++.|..||..+|+.+..+..... +...-...++..++...++.++.+|..++....+......
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~------~~~~~~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~- 107 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGP------ISGAPVVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS- 107 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSC------GGSGEEEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeecccc------ccceeeecccccccccceeeeEecccCCcceeeeeccccc-
Confidence 455777778999999999999999888887442 1111222344444455788999999888533222111110
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecC
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQE 265 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~ 265 (279)
.... ......... .+..++.+..++.|..+|+++|+.+.......
T Consensus 108 --~~~~-~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~ 152 (238)
T PF13360_consen 108 --PPAG-VRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLLWKYPVGE 152 (238)
T ss_dssp --CTCS-TB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEEEEEESST
T ss_pred --cccc-cccccCceE-ecCEEEEEeccCcEEEEecCCCcEEEEeecCC
Confidence 1111 122223333 35677778879999999999999988776643
No 320
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.24 E-value=2e-05 Score=58.52 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=97.8
Q ss_pred EEccCCCeEEEeeCC-----CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672 67 KWSPDGSSFLTSSED-----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (279)
Q Consensus 67 ~~~~~~~~l~t~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (279)
.|||||.+|+..-.| |.|-|||...+- .+.+........|+.+.+.+||+.+
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~f-----------------------qrvgE~~t~GiGpHev~lm~DGrtl 176 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGF-----------------------QRVGEFSTHGIGPHEVTLMADGRTL 176 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEeccccc-----------------------ceecccccCCcCcceeEEecCCcEE
Confidence 589999988865443 779999988431 1112222223344445567888888
Q ss_pred EEecC------------------CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCC----eEEE
Q 023672 142 ASTTR------------------DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK----SVRV 198 (279)
Q Consensus 142 ~s~~~------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~----~i~~ 198 (279)
+.+.. .-++.+.|..+|+.+.+...+... ....+..++..++|..++.+ ..| .--+
T Consensus 177 vvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l-~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppL 255 (366)
T COG3490 177 VVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASL-RQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPL 255 (366)
T ss_pred EEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhh-hhcceeeeeeCCCCcEEEEEEeeCCCccCCcc
Confidence 77642 123555565666655444333211 12268889999999888743 222 2222
Q ss_pred EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE
Q 023672 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV 260 (279)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 260 (279)
.-...++++++.+.........-...|-+++.+..++-..+|.-..+...+||..+|..+..
T Consensus 256 vg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 256 VGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred eeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 22223344444443322222333456888999884555555555566688999999987643
No 321
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.23 E-value=4.8e-05 Score=65.01 Aligned_cols=126 Identities=17% Similarity=0.220 Sum_probs=88.0
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Eec---------CCeEEEEEccCCCC
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY---------NKSVRVFDVHRPGR 206 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~---------d~~i~~~d~~~~~~ 206 (279)
+++++.+|...|+|.+-|.++.+.+.++..|.. .+. +|+-.|+.|+ +|. |..|+|||+|+-
T Consensus 186 Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~-----siS--DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmm-- 256 (1118)
T KOG1275|consen 186 NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG-----SIS--DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMM-- 256 (1118)
T ss_pred cCcEEEeecccceEEeecCCcCceeeeeecccc-----cee--eeeccCCeEEEeecccccccccccchhhhhhhhhh--
Confidence 778999999999999999999999999999886 554 5566677777 552 567999999983
Q ss_pred ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-eE---EEEEeecCCCEEEEEEccCCC
Q 023672 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-EL---LYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-~~---~~~~~~~~~~v~~~~~spdg~ 278 (279)
+.+..+ .-+.+ ..-+.|.|.=...++.++..|...+-|..+. .+ +..+......+.++.+|++|.
T Consensus 257 --ral~PI----~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~ 325 (1118)
T KOG1275|consen 257 --RALSPI----QFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGD 325 (1118)
T ss_pred --hccCCc----ccccC-chhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCc
Confidence 222122 11122 2456788855667888888999999884322 22 222333344588899998875
No 322
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.2e-05 Score=63.18 Aligned_cols=182 Identities=12% Similarity=0.059 Sum_probs=115.3
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeC-CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSE-DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
-...|-+.|.+++.+-++..++|++. |..++++|+++-....-..... .-..++|... .
T Consensus 48 hFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~------------------lPg~a~wv~s--k 107 (558)
T KOG0882|consen 48 HFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVD------------------LPGFAEWVTS--K 107 (558)
T ss_pred hhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccccc------------------CCCceEEecC--C
Confidence 34567788889999999999999777 9999999998643321110000 0001111000 0
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCee--eEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLL--RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK 210 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~ 210 (279)
-.+-...-++.-.++.+.++|-....+ ...-..|.. +|.++.+.+.+..+.+. ..|.|.-|....+-+..+.
T Consensus 108 Gd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s-----PV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~ 182 (558)
T KOG0882|consen 108 GDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS-----PVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT 182 (558)
T ss_pred CCeeeeEEeecccCCCcEEECCcCCcCccceecccccC-----ceEEEEeeccccceeeccccceeEeecCCCcccCccc
Confidence 001112334455688999999875432 222233443 89999999999988877 7899999988731110000
Q ss_pred --e-----eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 211 --Y-----STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 211 --~-----~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
. .+....+........++.|+| ++..+.+-+.|..|++++.+++++++.+.
T Consensus 183 ~l~~~~K~eTdLy~f~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 183 NLNFELKHETDLYGFPKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred cccccccccchhhcccccccCccceEEcc-ccCcccccCcccEEEEEEeccchhhhhhh
Confidence 0 011111123355678999999 88999999999999999999998766554
No 323
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.22 E-value=0.00019 Score=61.05 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=105.6
Q ss_pred ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (279)
.|.| |++.+..++.|+.+|.|.+++-.-.-. . ...... ..+...-| ......+|
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~~-~----------------~fqa~~-~siv~~L~------~~~~~~~L 80 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQLI-R----------------GFQAYE-QSIVQFLY------ILNKQNFL 80 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccceee-e----------------hheecc-hhhhhHhh------cccCceEE
Confidence 4544 678888999999999988887541100 0 011111 11111111 11223466
Q ss_pred EEecCCC-----cEEEEECCCC------eeeEEEe--ccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCC-CC
Q 023672 142 ASTTRDH-----PIHLWDATTG------LLRCTYR--AYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRP-GR 206 (279)
Q Consensus 142 ~s~~~d~-----~i~i~d~~~~------~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~-~~ 206 (279)
++.+.|+ .|++|+++.. ++....+ .+..+....++.+++.+.+-+.+++| .+|.|..+.-+-. .+
T Consensus 81 ~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDr 160 (933)
T KOG2114|consen 81 FSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDR 160 (933)
T ss_pred EEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhcc
Confidence 6666554 4899999743 2231112 21222234478899999998899999 9999998854321 11
Q ss_pred ceeeeeecccccCCCCCceEEEEEccCCCcE-EEEEeCCCcEEEEecCCCeE-EEEEeecCCCEEEEEEccC
Q 023672 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM-LAIGSYSQTSAIYREDNMEL-LYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~-l~~~~~dg~i~~wd~~~~~~-~~~~~~~~~~v~~~~~spd 276 (279)
..+. .+. .....+|+.+.+.. ++.. ++++. -..|.+|.+....+ +..+..|..++.+-+|++.
T Consensus 161 gsr~--~~~---~~~~~pITgL~~~~-d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~ 225 (933)
T KOG2114|consen 161 GSRQ--DYS---HRGKEPITGLALRS-DGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDG 225 (933)
T ss_pred ccce--eee---ccCCCCceeeEEec-CCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCC
Confidence 1111 111 23357899999988 5554 34333 35689999874443 4457777778888887763
No 324
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=4.8e-05 Score=59.91 Aligned_cols=188 Identities=11% Similarity=0.029 Sum_probs=118.0
Q ss_pred CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (279)
-|++.|+-+.-+ ..+++.+++.||.++.|--..-.. .. ++. ....|-..+.++ +.+.+
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG------vE-------fVK-hFraHL~~I~sl-------~~S~d 64 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG------VE-------FVK-HFRAHLGVILSL-------AVSYD 64 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccc------ee-------ehh-hhHHHHHHHHhh-------hcccc
Confidence 377777766544 457899999999999997653100 00 000 001111223333 44778
Q ss_pred CcEEEEecC-CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC--CEEEEe--cCCeEEEEEccCCCCceeeee
Q 023672 138 SCVFASTTR-DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG--TKIFAG--YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 138 ~~~l~s~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~--~d~~i~~~d~~~~~~~~~~~~ 212 (279)
+..+.+.+. |..++++|+++-....-++...-++ .+ ++..++.. ..++++ .++.+.++|-+....+.
T Consensus 65 g~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg---~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~---- 136 (558)
T KOG0882|consen 65 GWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPG---FA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD---- 136 (558)
T ss_pred ceeEeeccCcccceeEEEeeccchhhhcccccCCC---ce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc----
Confidence 888999777 9999999998766554444333211 11 22223321 245544 78999999988642211
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC------CeE---------EEEEeecCCCEEEEEEccCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN------MEL---------LYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~------~~~---------~~~~~~~~~~v~~~~~spdg 277 (279)
.....-|..+|..+.+++ -+..+++....|.|.-|.... .+. +..+........++.|+|+|
T Consensus 137 --~~fkklH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g 213 (558)
T KOG0882|consen 137 --GYFKKLHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDG 213 (558)
T ss_pred --ceecccccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcccc
Confidence 111257889999999999 889999999999999998762 111 22223334567899999998
Q ss_pred C
Q 023672 278 Y 278 (279)
Q Consensus 278 ~ 278 (279)
.
T Consensus 214 ~ 214 (558)
T KOG0882|consen 214 A 214 (558)
T ss_pred C
Confidence 5
No 325
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.19 E-value=0.0013 Score=49.58 Aligned_cols=156 Identities=13% Similarity=0.065 Sum_probs=85.9
Q ss_pred CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (279)
Q Consensus 71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 150 (279)
++..+++++.|+.+..+|..+++.......... ........... ...+..++.+..++.|
T Consensus 75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~-----------~~~~~~~~~~~---------~~~~~~~~~~~~~g~l 134 (238)
T PF13360_consen 75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSS-----------PPAGVRSSSSP---------AVDGDRLYVGTSSGKL 134 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SS-----------CTCSTB--SEE---------EEETTEEEEEETCSEE
T ss_pred cccccccccceeeeEecccCCcceeeeeccccc-----------cccccccccCc---------eEecCEEEEEeccCcE
Confidence 345566677788899999887765332100000 00000000011 1135677888889999
Q ss_pred EEEECCCCeeeEEEeccCccccc-----cceeeEEECCCCCEEEEecCCe-EEEEEccCCCCceeeeeecccccCCCCCc
Q 023672 151 HLWDATTGLLRCTYRAYDAVDEI-----TAAFSVAFNPTGTKIFAGYNKS-VRVFDVHRPGRDFEKYSTLKGNKEGQAGI 224 (279)
Q Consensus 151 ~i~d~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~d~~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 224 (279)
..+|+++|+.+............ ..+..-....++..+++..++. +.+ |+.++. ..... . ...
T Consensus 135 ~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~~tg~----~~w~~----~--~~~ 203 (238)
T PF13360_consen 135 VALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DLATGE----KLWSK----P--ISG 203 (238)
T ss_dssp EEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ETTTTE----EEEEE----C--SS-
T ss_pred EEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-ECCCCC----EEEEe----c--CCC
Confidence 99999999998888764321110 0111222223443344556775 555 998852 11111 1 111
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672 225 MSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259 (279)
Q Consensus 225 v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~ 259 (279)
+..+ ..+ .+..|+.++.++.|..||+++++.+-
T Consensus 204 ~~~~-~~~-~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 204 IYSL-PSV-DGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp ECEC-EEC-CCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred ccCC-cee-eCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 2221 345 55667777789999999999998764
No 326
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.0002 Score=58.31 Aligned_cols=193 Identities=17% Similarity=0.174 Sum_probs=100.8
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEE-EeeCCCeEEEE--eCCCCccccccccccccCCCCccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFL-TSSEDKTLRIF--SLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~-t~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
.++.+++.+++..... ... +.-..-+|+|||++|+ +...||...|| |+..+....
T Consensus 219 ~i~~~~l~~g~~~~i~----~~~---g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~--------------- 276 (425)
T COG0823 219 RIYYLDLNTGKRPVIL----NFN---GNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR--------------- 276 (425)
T ss_pred eEEEEeccCCccceee----ccC---CccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee---------------
Confidence 4555566555543321 122 2344568999999876 55667765554 555433111
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEecCC-C--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRD-H--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d-~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (279)
..+...+.. + ..++|+|+.++..+.. | .|.+++++.+.......... .-..-.|+|+|+++
T Consensus 277 ----Lt~~~gi~~---~---Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~------~~~~p~~SpdG~~i 340 (425)
T COG0823 277 ----LTNGFGINT---S---PSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGG------GNSNPVWSPDGDKI 340 (425)
T ss_pred ----cccCCcccc---C---ccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCC------CCcCccCCCCCCEE
Confidence 111111111 2 2569999998877543 3 57777887666533322222 11267899999999
Q ss_pred E-Ee-cCCe--EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-cEEEEec-CCCeEEEEEe
Q 023672 189 F-AG-YNKS--VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIYRE-DNMELLYVLH 262 (279)
Q Consensus 189 ~-~~-~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~i~~wd~-~~~~~~~~~~ 262 (279)
+ .+ .+|. |.+.|+.++.. .. .+ ........-.|.| ++..+...+..+ .=.++.+ .+++....+.
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~-~~---~l-----t~~~~~e~ps~~~-ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGK-IR---IL-----TSTYLNESPSWAP-NGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred EEEeccCCceeeEEeccCCCCc-EE---Ec-----cccccCCCCCcCC-CCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 8 44 3455 66666665321 11 11 1122333457778 666555443322 2223322 3444444555
Q ss_pred ecCCCEEEEEEcc
Q 023672 263 GQEGGVTHVSKLS 275 (279)
Q Consensus 263 ~~~~~v~~~~~sp 275 (279)
...+.+...+|+|
T Consensus 411 ~~~~~~~~p~w~~ 423 (425)
T COG0823 411 LADGDVRVPAWSP 423 (425)
T ss_pred ccCcceecccccC
Confidence 4445666666655
No 327
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.00013 Score=58.91 Aligned_cols=130 Identities=16% Similarity=0.233 Sum_probs=88.3
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC--EE-----EEe-cCCeEEEEEccCCCCceeee
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT--KI-----FAG-YNKSVRVFDVHRPGRDFEKY 211 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l-----~~~-~d~~i~~~d~~~~~~~~~~~ 211 (279)
++.++.....|+-.|++.|+.+.....+. .|.-+.+.|+.+ .+ +.| .+..|.-||.|-.+.. .+
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~------di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--kl 419 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFED------DINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--KL 419 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccC------CcceeeccCCcchhcccccccEEeecCCceEEecccccCcc--ee
Confidence 34455566778889999999999998877 466677777643 12 246 8899999999964432 11
Q ss_pred eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
......--.......|++-.. ..+++.||.+|.|++||--.......+++...+|..+..+.||++
T Consensus 420 ~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKw 485 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKW 485 (644)
T ss_pred eeeeccccccccccceeeecC--CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcE
Confidence 111100011123455555544 458999999999999997333445567888889999999999974
No 328
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.17 E-value=0.0012 Score=53.53 Aligned_cols=180 Identities=16% Similarity=0.184 Sum_probs=114.9
Q ss_pred EEEEEccCCCeEE-EeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEE
Q 023672 64 KGIKWSPDGSSFL-TSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFA 142 (279)
Q Consensus 64 ~~~~~~~~~~~l~-t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~ 142 (279)
.+++.++.+..++ +...+..|.+.|..+..... ...+...|..+++++++..++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~-------------------------~~~vG~~P~~~~~~~~~~~vY 131 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG-------------------------SIPVGLGPVGLAVDPDGKYVY 131 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceee-------------------------EeeeccCCceEEECCCCCEEE
Confidence 4677888777444 44456889999865432210 011112566677899998877
Q ss_pred EecC---CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCCCceeeeeecccc
Q 023672 143 STTR---DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (279)
Q Consensus 143 s~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~ 217 (279)
.+.. ++++.+.|..+++.......... + ..++++|+|..++.. .++.|.++|.... .... ......
T Consensus 132 V~n~~~~~~~vsvid~~t~~~~~~~~vG~~-----P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~-~v~~--~~~~~~ 202 (381)
T COG3391 132 VANAGNGNNTVSVIDAATNKVTATIPVGNT-----P-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGN-SVVR--GSVGSL 202 (381)
T ss_pred EEecccCCceEEEEeCCCCeEEEEEecCCC-----c-ceEEECCCCCeEEEEecCCCeEEEEeCCCc-ceec--cccccc
Confidence 7755 68899999998888877554432 3 789999999987744 6899999997762 1110 010000
Q ss_pred cCCCCCceEEEEEccCCCcEEEEEeCC---CcEEEEecCCCeEEEE-EeecCCCEEEEEEccCCCC
Q 023672 218 KEGQAGIMSAIAFSPTHTGMLAIGSYS---QTSAIYREDNMELLYV-LHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 218 ~~~~~~~v~~~~~sp~~~~~l~~~~~d---g~i~~wd~~~~~~~~~-~~~~~~~v~~~~~spdg~~ 279 (279)
-.-......+.++| ++..+...... +.+...|..++..... +..-......+..+|+|++
T Consensus 203 -~~~~~~P~~i~v~~-~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~ 266 (381)
T COG3391 203 -VGVGTGPAGIAVDP-DGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKA 266 (381)
T ss_pred -cccCCCCceEEECC-CCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCE
Confidence 12223456789999 66654444333 5899999998887655 2221114667889998863
No 329
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.12 E-value=0.00041 Score=56.77 Aligned_cols=165 Identities=10% Similarity=0.131 Sum_probs=83.9
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
.-....++++|+|+++++++ ||...||.....+. ...+.-..+.| .+.+
T Consensus 32 ~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~----------------------k~~G~g~~~vw-------~~~n- 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRN----------------------KAFGSGLSFVW-------SSRN- 80 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEE----------------------EEEEE-SEEEE--------TSS-
T ss_pred CcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcc----------------------cccCceeEEEE-------ecCc-
Confidence 34467899999999988855 78888887432211 11123334455 4444
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccC
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 219 (279)
.+|+-...++|.++.--+......+.... .+..|-. |.+|....++.|.+||+.+. +.+..+ .
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~~------~~~~If~---G~LL~~~~~~~i~~yDw~~~----~~i~~i----~ 143 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLPF------SVEKIFG---GNLLGVKSSDFICFYDWETG----KLIRRI----D 143 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----SS-------EEEEE----SSSEEEEETTEEEEE-TTT------EEEEE----S
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCCc------ccceEEc---CcEEEEECCCCEEEEEhhHc----ceeeEE----e
Confidence 46666668889986332333333444332 2233322 88888776779999999983 333333 1
Q ss_pred CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC-----------eEEEEEeecCCCEEEEEEccC
Q 023672 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM-----------ELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~-----------~~~~~~~~~~~~v~~~~~spd 276 (279)
-.+|..+.|++ ++.+++..+.+ .+.|++.... ..+..+..-...|.+..|.-|
T Consensus 144 --v~~vk~V~Ws~-~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 144 --VSAVKYVIWSD-DGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp --S-E-EEEEE-T-TSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred --cCCCcEEEEEC-CCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 12378999999 88888888755 5777664322 023333332445666666543
No 330
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.10 E-value=9.3e-06 Score=41.36 Aligned_cols=34 Identities=24% Similarity=0.459 Sum_probs=30.7
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEe
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFS 88 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd 88 (279)
.+.+|...|.++.|++++.++++++.|+.+++|+
T Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 7 TLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4557888999999999999999999999999996
No 331
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.09 E-value=5.3e-05 Score=62.89 Aligned_cols=114 Identities=15% Similarity=0.142 Sum_probs=83.3
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeee
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~ 212 (279)
++..+.+++.|+.-|.+.+|+-..++... ++... ....+..+..+++..++++| ..|.|.++-+... .+.....
T Consensus 41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~~-~~~~~---~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~~ 115 (726)
T KOG3621|consen 41 VDATEEYLAMGSSAGSVYLYNRHTGEMRK-LKNEG---ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLDY 115 (726)
T ss_pred eecCCceEEEecccceEEEEecCchhhhc-ccccC---ccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCccee
Confidence 36678899999999999999977665433 22211 11256677889988888876 8899999998873 3222221
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
+......|...|++++|++ ++..+++|...|+|.+-.+.+
T Consensus 116 -~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 116 -VTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred -eccccccCCceEEEEEecc-cccEEeecCCCceEEEEEech
Confidence 1111245788999999999 999999999999998887766
No 332
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.08 E-value=0.00073 Score=43.22 Aligned_cols=91 Identities=16% Similarity=0.155 Sum_probs=61.4
Q ss_pred cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccccc
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNK 218 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~ 218 (279)
+.|++|+.|..|++|+-. +.+..+.... .|.+++-...+++.++-.+|+|-+|+-.. +. ...+
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~------~v~~L~~~~~~~F~Y~l~NGTVGvY~~~~-----Rl-WRiK--- 78 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITETD------KVTSLCSLGGGRFAYALANGTVGVYDRSQ-----RL-WRIK--- 78 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEeccc------ceEEEEEcCCCEEEEEecCCEEEEEeCcc-----ee-eeec---
Confidence 579999999999999854 5666666555 67788877776655566999999998754 11 2221
Q ss_pred CCCCCceEEEEEcc---CCCcEEEEEeCCCcEE
Q 023672 219 EGQAGIMSAIAFSP---THTGMLAIGSYSQTSA 248 (279)
Q Consensus 219 ~~~~~~v~~~~~sp---~~~~~l~~~~~dg~i~ 248 (279)
. ...+.++++.. ++-.-|++|-.+|.|-
T Consensus 79 S--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 79 S--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred c--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1 22355555543 2234688888888764
No 333
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.001 Score=53.76 Aligned_cols=207 Identities=12% Similarity=0.087 Sum_probs=103.2
Q ss_pred eeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEee
Q 023672 49 FYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWF 128 (279)
Q Consensus 49 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 128 (279)
.+.....+....+.|++++.|.=| ++|.|..+|.+.|.|++............ ..........++++.|.
T Consensus 75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~---------~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRE---------SFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----------T-SS----EEEEEEE
T ss_pred ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccc---------cccccccccCeeEEEEE
Confidence 344444566668999999998544 99999999999999998765533211111 00112233456677775
Q ss_pred CcccccCCCC---cEEEEecCCCcEEEEECC-C--CeeeEEEeccCccccccceeeEE-ECCC-C---------------
Q 023672 129 PHMSASDPTS---CVFASTTRDHPIHLWDAT-T--GLLRCTYRAYDAVDEITAAFSVA-FNPT-G--------------- 185 (279)
Q Consensus 129 ~~~~~~~~~~---~~l~s~~~d~~i~i~d~~-~--~~~~~~~~~~~~~~~~~~v~~~~-~~~~-~--------------- 185 (279)
.- ....|+ -.+++|...|.+.+|.+. . +.....+.... .....+|..|. |+.+ |
T Consensus 145 vm--~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~-~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 145 VM--TLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGAT-TNHDSPILSIIPINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EE--E-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE---SS----EEEEEETTT--B-B-BHHHHHGGGG
T ss_pred EE--ecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecc-ccCCCceEEEEEEECCCCCcccCchhHhhcccc
Confidence 42 222333 467888889999998774 1 21111111111 00111333333 2211 1
Q ss_pred -----CEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEE-----ccCCCcEEEEEeCCCcEEEEecCCC
Q 023672 186 -----TKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAF-----SPTHTGMLAIGSYSQTSAIYREDNM 255 (279)
Q Consensus 186 -----~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-----sp~~~~~l~~~~~dg~i~~wd~~~~ 255 (279)
.++++..+..++++..-+.. .... .+ ...-....+++ .. .+..|++-..+|.|++|.+...
T Consensus 222 g~~i~g~vVvvSe~~irv~~~~~~k-~~~K--~~-----~~~~~~~~~~vv~~~~~~-~~~~Lv~l~~~G~i~i~SLP~L 292 (395)
T PF08596_consen 222 GISIPGYVVVVSESDIRVFKPPKSK-GAHK--SF-----DDPFLCSSASVVPTISRN-GGYCLVCLFNNGSIRIYSLPSL 292 (395)
T ss_dssp T----EEEEEE-SSEEEEE-TT----EEEE--E------SS-EEEEEEEEEEEE-EE-EEEEEEEEETTSEEEEEETTT-
T ss_pred CCCcCcEEEEEcccceEEEeCCCCc-ccce--ee-----ccccccceEEEEeecccC-CceEEEEEECCCcEEEEECCCc
Confidence 14445578889999887631 1111 11 11112333444 23 5678888899999999999998
Q ss_pred eEEEEEeecCC----CEEEEEEccCC
Q 023672 256 ELLYVLHGQEG----GVTHVSKLSSA 277 (279)
Q Consensus 256 ~~~~~~~~~~~----~v~~~~~spdg 277 (279)
+.+..+..+.. .+....++++|
T Consensus 293 kei~~~~l~~~~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 293 KEIKSVSLPPPLDSRRLSSSSISRNG 318 (395)
T ss_dssp -EEEEEE-SS---HHHHTT-EE-TTS
T ss_pred hHhhcccCCCccccccccccEECCCC
Confidence 88877765321 23345556655
No 334
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=0.00085 Score=57.51 Aligned_cols=212 Identities=13% Similarity=0.127 Sum_probs=108.4
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccc------------cccccCCC----CcccceeeecC
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVN------------ACSLAKDQ----DSYEASLVVTE 118 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~~~----~~~~~~~~~~~ 118 (279)
....|+.+|..+.|||+|..|+|+..-|.|.+|....-...+..+ .|..++.. -+.......+.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD 175 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD 175 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence 566799999999999999999999999999999987322111000 00000000 00000000111
Q ss_pred CCceE-EEEeeCcc------cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-
Q 023672 119 GESVY-DFCWFPHM------SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA- 190 (279)
Q Consensus 119 ~~~v~-~~~~~~~~------~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~- 190 (279)
...+. -+.|.|.. -.-.|+|..++.+..+|+|...|- .|+.....+.... | .+-|.+...-+.+
T Consensus 176 e~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~------v-QmLf~~~~eai~~i 247 (1416)
T KOG3617|consen 176 ESALDEPFNWKESLAERSDEKSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE------V-QMLFMGYCEAISII 247 (1416)
T ss_pred hhhhcccccCccchhhccccccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch------H-HHHHhcccceEEEE
Confidence 11111 12233221 123678888999999999987773 4555444443321 1 1223332211111
Q ss_pred ecCCeEEEEEccC----------------CCCce--------eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc
Q 023672 191 GYNKSVRVFDVHR----------------PGRDF--------EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT 246 (279)
Q Consensus 191 ~~d~~i~~~d~~~----------------~~~~~--------~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~ 246 (279)
-.+-.+.++-... +++.. ..+..-..-.......+.|+|++. -+..|+.|...|.
T Consensus 248 ~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~-~~~~l~agt~~gn 326 (1416)
T KOG3617|consen 248 IEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGE-KEIRLWAGTKEGN 326 (1416)
T ss_pred eeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEec-cceEEEecccCCc
Confidence 1222222221111 11100 000000000011245689999999 8889999999999
Q ss_pred EEEEecC-C---CeE---EEEEee---cCCCEEEEEEcc
Q 023672 247 SAIYRED-N---MEL---LYVLHG---QEGGVTHVSKLS 275 (279)
Q Consensus 247 i~~wd~~-~---~~~---~~~~~~---~~~~v~~~~~sp 275 (279)
+.+|--- . |.+ ...+.+ ..+.|+.+.|.|
T Consensus 327 v~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~ 365 (1416)
T KOG3617|consen 327 VTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGP 365 (1416)
T ss_pred EEEeeecCccccCCCCcceEEecCchhhccceEEEEecc
Confidence 9999532 2 112 223332 346789999987
No 335
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.00 E-value=0.0012 Score=53.06 Aligned_cols=51 Identities=24% Similarity=0.349 Sum_probs=36.9
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENG 93 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~ 93 (279)
..+++|+.++.... +......+....|+|+|+.++... ++.|.+++..++.
T Consensus 24 ~y~i~d~~~~~~~~-------l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~ 74 (353)
T PF00930_consen 24 DYYIYDIETGEITP-------LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQ 74 (353)
T ss_dssp EEEEEETTTTEEEE-------SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSE
T ss_pred eEEEEecCCCceEE-------CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCC
Confidence 56788888876643 222256788999999999998776 5789999886653
No 336
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.97 E-value=0.001 Score=42.63 Aligned_cols=99 Identities=22% Similarity=0.342 Sum_probs=62.8
Q ss_pred eEEEEEcc---CC-CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 63 LKGIKWSP---DG-SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 63 v~~~~~~~---~~-~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
|++|++.. || +.|++||.|..|++|+-++- .........|..++.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~--------------------~~Ei~e~~~v~~L~~~--------~~ 53 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI--------------------VAEITETDKVTSLCSL--------GG 53 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE--------------------EEEEecccceEEEEEc--------CC
Confidence 66777655 33 58999999999999987631 1234455567776542 23
Q ss_pred cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC---CC-CEEEEe-cCCeEE
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP---TG-TKIFAG-YNKSVR 197 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~-~~l~~~-~d~~i~ 197 (279)
..++.+..+|+|-+|+-. ..+...+... .+.++.+.. +| ..|++| .+|.|-
T Consensus 54 ~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~------~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 54 GRFAYALANGTVGVYDRS--QRLWRIKSKN------QVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred CEEEEEecCCEEEEEeCc--ceeeeeccCC------CeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 478889999999999853 2333333322 344554433 33 356677 888764
No 337
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.96 E-value=0.00088 Score=54.30 Aligned_cols=151 Identities=11% Similarity=0.061 Sum_probs=87.1
Q ss_pred CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (279)
Q Consensus 71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 150 (279)
.+..+++++.+|.|.-+|..+++........ ..+. -.| ..++..++.++.++.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~------------------~~~~---~~p-----~v~~~~v~v~~~~g~l 117 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLD------------------ERLS---GGV-----GADGGLVFVGTEKGEV 117 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCC------------------CCcc---cce-----EEcCCEEEEEcCCCEE
Confidence 3567888889999999999887653221111 0000 001 1135577788889999
Q ss_pred EEEECCCCeeeEEEeccCccccccceee-EEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEE
Q 023672 151 HLWDATTGLLRCTYRAYDAVDEITAAFS-VAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIA 229 (279)
Q Consensus 151 ~i~d~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 229 (279)
..+|..+|+.+........ +.+ ... .++..++...++.+..||.+++....+.. ...... .... ..+..
T Consensus 118 ~ald~~tG~~~W~~~~~~~------~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~-~~~~~~-~~~~-~~sp~ 187 (377)
T TIGR03300 118 IALDAEDGKELWRAKLSSE------VLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYS-RVTPAL-TLRG-SASPV 187 (377)
T ss_pred EEEECCCCcEeeeeccCce------eecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEc-cCCCce-eecC-CCCCE
Confidence 9999999998877665432 111 111 23333334589999999998853222111 100000 0000 01112
Q ss_pred EccCCCcEEEEEeCCCcEEEEecCCCeEEEE
Q 023672 230 FSPTHTGMLAIGSYSQTSAIYREDNMELLYV 260 (279)
Q Consensus 230 ~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~ 260 (279)
.. + ..++.+..++.+..+|.++|+.+..
T Consensus 188 ~~--~-~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 188 IA--D-GGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EE--C-CEEEEECCCCEEEEEEccCCCEeee
Confidence 21 2 3567778889999999988876643
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=2.4e-05 Score=66.37 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=77.9
Q ss_pred cCCCCcEEEEecC----CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCce
Q 023672 134 SDPTSCVFASTTR----DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDF 208 (279)
Q Consensus 134 ~~~~~~~l~s~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~ 208 (279)
++|...++++++. .|.|.||- ++|++......+- .+.+++|+|..-.|+.| .-|.+.+|...+.
T Consensus 23 WHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~------hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---- 91 (1416)
T KOG3617|consen 23 WHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPV------HATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---- 91 (1416)
T ss_pred cCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccce------ehhhhccChHHHHHhhccccceeEEEecCCc----
Confidence 3556667777653 56787774 6676544333222 45689999998888888 8899999998872
Q ss_pred eeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 209 EKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 209 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
...+.. ..|..+|..+.||| +|..|+++..-|.+.+|...
T Consensus 92 -e~htv~---~th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 92 -ETHTVV---ETHPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -eeeeec---cCCCCCceeEEecC-CCCeEEEcCCCceeEEEEee
Confidence 222322 57889999999999 99999999999999999876
No 339
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.93 E-value=0.0055 Score=47.74 Aligned_cols=96 Identities=13% Similarity=0.188 Sum_probs=63.1
Q ss_pred ceeeEEECCCCCEEEEe--cCCeEEEEEccC-CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC-cEEEE
Q 023672 175 AAFSVAFNPTGTKIFAG--YNKSVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ-TSAIY 250 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg-~i~~w 250 (279)
..+.|+||||++.++.. ..+.|.-|++.. .+......... ......+..-.++... +|.+.+++..+| .|..|
T Consensus 164 ~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~--~~~~~~G~PDG~~vDa-dG~lw~~a~~~g~~v~~~ 240 (307)
T COG3386 164 IPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFV--DFDEEPGLPDGMAVDA-DGNLWVAAVWGGGRVVRF 240 (307)
T ss_pred ecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEE--EccCCCCCCCceEEeC-CCCEEEecccCCceEEEE
Confidence 55789999999888855 558888888762 11111110001 0122345566778887 777775555454 89999
Q ss_pred ecCCCeEEEEEeecCCCEEEEEEc
Q 023672 251 REDNMELLYVLHGQEGGVTHVSKL 274 (279)
Q Consensus 251 d~~~~~~~~~~~~~~~~v~~~~~s 274 (279)
+.. ++++..+..+...+++++|-
T Consensus 241 ~pd-G~l~~~i~lP~~~~t~~~Fg 263 (307)
T COG3386 241 NPD-GKLLGEIKLPVKRPTNPAFG 263 (307)
T ss_pred CCC-CcEEEEEECCCCCCccceEe
Confidence 987 99988888776677777774
No 340
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=8.3e-05 Score=61.06 Aligned_cols=93 Identities=24% Similarity=0.355 Sum_probs=69.1
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeec-CCCceE-EEEeeCcccccCCCC
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVT-EGESVY-DFCWFPHMSASDPTS 138 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~-~~~~~~~~~~~~~~~ 138 (279)
-.|.-+.|+|.-..+|++..+|.|.+..++-.+. .... ++..+. +++| .|||
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~qRl-------------------wtip~p~~~v~~sL~W-------~~DG 74 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNWQRL-------------------WTIPIPGENVTASLCW-------RPDG 74 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecccee-------------------EeccCCCCccceeeee-------cCCC
Confidence 3477899999999999999999988887762211 2222 445555 8888 7789
Q ss_pred cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP 183 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 183 (279)
+.||.|-.||+|++.|+.++..+........ ..|.++.|++
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~l~~~~~s~e----~~is~~~w~~ 115 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGRLVSFLFSVE----TDISKGIWDR 115 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCceeccccccc----cchheeeccc
Confidence 9999999999999999999987766322111 1677888864
No 341
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00012 Score=60.25 Aligned_cols=91 Identities=12% Similarity=0.118 Sum_probs=69.4
Q ss_pred ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceE-EEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS-AIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
.+.-+.|+|.-.++|.+ .+|.+.+..+.- +.+.++ .-+...++ +++|.| +|.+|+.|-.||+|++.|+
T Consensus 22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----qRlwti----p~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dv 91 (665)
T KOG4640|consen 22 NIKRIEWNPKMDLIATRTEKGELLIHRLNW-----QRLWTI----PIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDV 91 (665)
T ss_pred ceEEEEEcCccchhheeccCCcEEEEEecc-----ceeEec----cCCCCccceeeeecC-CCCEEEEEecCCeEEEEEc
Confidence 67789999999999966 888888887763 334444 22334455 999999 8999999999999999999
Q ss_pred CCCeEEEEE-eecCCCEEEEEEcc
Q 023672 253 DNMELLYVL-HGQEGGVTHVSKLS 275 (279)
Q Consensus 253 ~~~~~~~~~-~~~~~~v~~~~~sp 275 (279)
.++..+... ......|..+-|.|
T Consensus 92 e~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 92 EKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred cCCCceeccccccccchheeeccc
Confidence 999877652 22456777777763
No 342
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.87 E-value=0.0064 Score=49.25 Aligned_cols=188 Identities=11% Similarity=0.132 Sum_probs=94.8
Q ss_pred ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcccc--ccccc---------------cc------c-CC-CCcccceee-
Q 023672 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISY--DVNAC---------------SL------A-KD-QDSYEASLV- 115 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~--~~~~~---------------~~------~-~~-~~~~~~~~~- 115 (279)
.|+.+.|+++..-|++|...|.|.||.+...+... ..... .+ . .. ...+.....
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999998899999999999999886543221 00000 00 0 00 111221111
Q ss_pred ecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccC---ccccccceeeEEECC-----CC--
Q 023672 116 VTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYD---AVDEITAAFSVAFNP-----TG-- 185 (279)
Q Consensus 116 ~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~-----~~-- 185 (279)
....++|..++. | |=.+++.|+.+|.+.|.|+|....+..-.... .......++++.|.. |+
T Consensus 83 ~~~~g~vtal~~-------S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 83 DAKQGPVTALKN-------S-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp ---S-SEEEEEE---------BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred eccCCcEeEEec-------C-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 122456777654 2 44589999999999999999888777644333 111223577777762 32
Q ss_pred -CEEEEe-cCCeEEEEEccC-CCCceeeeeecccccCCCCCceEEEE-EccCC--------------------CcEEEEE
Q 023672 186 -TKIFAG-YNKSVRVFDVHR-PGRDFEKYSTLKGNKEGQAGIMSAIA-FSPTH--------------------TGMLAIG 241 (279)
Q Consensus 186 -~~l~~~-~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~-~sp~~--------------------~~~l~~~ 241 (279)
-.+++| ..|.+.+|.+.- .+..+.. .+......+.++|..+. ++.+. ..+++.+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~g~f~v--~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv 232 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSNGRFSV--QFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV 232 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GGG-EEE--EEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred ceEEEEEeCCCCEEEEEEecCCCCceEE--EEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence 345577 889999998862 1111211 11111124455555554 32211 1134444
Q ss_pred eCCCcEEEEecCCCeEEEE
Q 023672 242 SYSQTSAIYREDNMELLYV 260 (279)
Q Consensus 242 ~~dg~i~~wd~~~~~~~~~ 260 (279)
+ +..++++...+.+...+
T Consensus 233 S-e~~irv~~~~~~k~~~K 250 (395)
T PF08596_consen 233 S-ESDIRVFKPPKSKGAHK 250 (395)
T ss_dssp --SSEEEEE-TT---EEEE
T ss_pred c-ccceEEEeCCCCcccce
Confidence 4 66799999887765443
No 343
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.80 E-value=0.0016 Score=52.93 Aligned_cols=137 Identities=14% Similarity=0.148 Sum_probs=84.2
Q ss_pred eeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCC--eE-----EEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672 36 LIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGS--SF-----LTSSEDKTLRIFSLPENGISYDVNACSLAKDQD 108 (279)
Q Consensus 36 ~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l-----~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 108 (279)
++-.|++.++.+..|.. |.+ |+-+.+.|+.+ .| +.|-.|..|.-||.+-.... ...
T Consensus 358 l~klDIE~GKIVeEWk~------~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~----kl~------ 420 (644)
T KOG2395|consen 358 LYKLDIERGKIVEEWKF------EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN----KLA------ 420 (644)
T ss_pred ceeeecccceeeeEeec------cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc----eee------
Confidence 44556677776654432 333 77777887653 22 35666888999998732110 000
Q ss_pred cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEE
Q 023672 109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKI 188 (279)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 188 (279)
.........+....+++ .. ...+|++|+.+|.|++||--..+....++.-+. +|..+..+.+|++|
T Consensus 421 -~~q~kqy~~k~nFsc~a-------TT-~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-----~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 421 -VVQSKQYSTKNNFSCFA-------TT-ESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-----AIKHVDVTADGKWI 486 (644)
T ss_pred -eeeccccccccccceee-------ec-CCceEEEeecCCcEEeehhhhhhhhhcccccCC-----ceeeEEeeccCcEE
Confidence 00001111122222222 12 334899999999999999733344445555555 89999999999999
Q ss_pred EEecCCeEEEEEccC
Q 023672 189 FAGYNKSVRVFDVHR 203 (279)
Q Consensus 189 ~~~~d~~i~~~d~~~ 203 (279)
++..+..+.+.++.-
T Consensus 487 l~Tc~tyLlLi~t~~ 501 (644)
T KOG2395|consen 487 LATCKTYLLLIDTLI 501 (644)
T ss_pred EEecccEEEEEEEec
Confidence 988888998888753
No 344
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.00038 Score=58.07 Aligned_cols=122 Identities=8% Similarity=0.065 Sum_probs=83.3
Q ss_pred CCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 59 PNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
|...|.--+++..+++++.|+.-|.+.+|+-..+..... .......+.+++ .++++.
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~-----------------~~~~~~~~~~~~------~vs~~e 88 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKL-----------------KNEGATGITCVR------SVSSVE 88 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcc-----------------cccCccceEEEE------Eecchh
Confidence 334455455667788999999999999999876644211 111122222222 347788
Q ss_pred cEEEEecCCCcEEEEECCCCee-eEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccC
Q 023672 139 CVFASTTRDHPIHLWDATTGLL-RCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR 203 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~ 203 (279)
.++|.|+..|.|.++-+..+.+ ...+..+.+..+...|++++|++++..+++| ..|.|.+-.+..
T Consensus 89 ~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 89 YLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred HhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 8999999999999998876432 2222223333344589999999999999999 889988887765
No 345
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.77 E-value=0.012 Score=46.58 Aligned_cols=149 Identities=12% Similarity=0.117 Sum_probs=84.8
Q ss_pred CCeEEEeeC----------CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEE
Q 023672 72 GSSFLTSSE----------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVF 141 (279)
Q Consensus 72 ~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l 141 (279)
..+|++|+. .|.|.++++.+.... ..+..........++|++++-. ++. |
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~-----------~~~l~~i~~~~~~g~V~ai~~~--------~~~-l 101 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPEN-----------NFKLKLIHSTEVKGPVTAICSF--------NGR-L 101 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------EEEEEEEEEESS-EEEEEEE--------TTE-E
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEccccc-----------ceEEEEEEEEeecCcceEhhhh--------CCE-E
Confidence 457776643 289999999864000 0011111223345678888641 344 4
Q ss_pred EEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccC
Q 023672 142 ASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (279)
Q Consensus 142 ~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 219 (279)
+.+. ++.|.+|++...+ ....-..+.. ..+.++.. .++++++| ....+.++..+.....+..+.. .
T Consensus 102 v~~~-g~~l~v~~l~~~~~l~~~~~~~~~----~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~-----d 169 (321)
T PF03178_consen 102 VVAV-GNKLYVYDLDNSKTLLKKAFYDSP----FYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLILVAR-----D 169 (321)
T ss_dssp EEEE-TTEEEEEEEETTSSEEEEEEE-BS----SSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEEEEE-----E
T ss_pred EEee-cCEEEEEEccCcccchhhheecce----EEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEEEEe-----c
Confidence 4433 5789999998877 4433332221 13444444 45688877 6777887766542332333322 2
Q ss_pred CCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
.....++++++-+ ++..++.+..+|.+.++...
T Consensus 170 ~~~~~v~~~~~l~-d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 170 YQPRWVTAAEFLV-DEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp SS-BEEEEEEEE--SSSEEEEEETTSEEEEEEE-
T ss_pred CCCccEEEEEEec-CCcEEEEEcCCCeEEEEEEC
Confidence 2345688999986 44689999999999998875
No 346
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.76 E-value=0.0022 Score=55.82 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=66.6
Q ss_pred EEEEecCCCcEEEEECCCCe--eeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccc
Q 023672 140 VFASTTRDHPIHLWDATTGL--LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGN 217 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 217 (279)
..+.|-.+..+..||.|-.. .+.. ..+ .........|++-+.+|.+.+++.+|.||+||--. . ..+..
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~-~~k-~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g--~------~AKT~ 613 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDS-QSK-QYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLG--K------RAKTA 613 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeec-ccc-ccccCCCceEEEecCCceEEEEeCCCcEEeecccc--h------hhhhc
Confidence 34556667889999998643 2211 111 11111257788888888777777999999999431 1 12222
Q ss_pred cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
+.+-..+|..|+.+. +|.++++.+ +..|.|++.
T Consensus 614 lp~lG~pI~~iDvt~-DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTA-DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCCCCCCeeEEEecC-CCcEEEEee-cceEEEEEE
Confidence 356678999999999 888888777 455777775
No 347
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.75 E-value=0.0014 Score=56.19 Aligned_cols=137 Identities=12% Similarity=0.131 Sum_probs=87.4
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccc-eeeEEECCCCCEEE-EecC-C----eEEEEEccCC--C
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITA-AFSVAFNPTGTKIF-AGYN-K----SVRVFDVHRP--G 205 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~-~~~d-~----~i~~~d~~~~--~ 205 (279)
++.+..++.|+.+|.|.+++- +-+....+..+.. . |..+.......+|+ .|.| + .+++||+... .
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~-----siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n 105 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQ-----SIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN 105 (933)
T ss_pred cCCCceEEEeeccccEEEecc-cceeeehheecch-----hhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCC
Confidence 678889999999999988773 3444466666554 3 44443333445666 4533 3 6999999863 1
Q ss_pred Cceeee---eecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC---C-CeEEEEEeecCCCEEEEEEccCCC
Q 023672 206 RDFEKY---STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED---N-MELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 206 ~~~~~~---~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~---~-~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
.+..++ ............++.+++.+. +-..+|+|-.+|.|..+.-. . +....-......+|+++++..||+
T Consensus 106 ~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 106 NSPQCLYEHRIFTIKNPTNPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGK 184 (933)
T ss_pred CCcceeeeeeeeccCCCCCCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCc
Confidence 223333 222222233467889999999 78899999999999888532 1 111111222356899999988875
No 348
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.70 E-value=0.00013 Score=36.81 Aligned_cols=32 Identities=31% Similarity=0.511 Sum_probs=28.5
Q ss_pred CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 219 EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 219 ~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
..|...|.++.|++ ++.++++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 46677899999999 778999999999999996
No 349
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=97.69 E-value=0.0028 Score=52.31 Aligned_cols=128 Identities=13% Similarity=0.199 Sum_probs=73.2
Q ss_pred eecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC-----CeeeEEEeccCccccccceeeEEECCCCCEEE
Q 023672 115 VVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT-----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF 189 (279)
Q Consensus 115 ~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 189 (279)
..+.-+.|..+.|.|.+.+-.| -+++......|.+|.+.- ++.+.....+-...-.--...+.|+|....|+
T Consensus 52 viGqFEhV~GlsW~P~~~~~~p---aLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~ 128 (671)
T PF15390_consen 52 VIGQFEHVHGLSWAPPCTADTP---ALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILT 128 (671)
T ss_pred EeeccceeeeeeecCcccCCCC---ceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEE
Confidence 3455578999999987544333 444555677899998852 23222221111100001234688999998888
Q ss_pred Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEEecC
Q 023672 190 AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYRED 253 (279)
Q Consensus 190 ~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~ 253 (279)
+- ....-.+++++......+. .+ ...+.|.|.||.+ +|+.|+.+ +..=.-++||-.
T Consensus 129 VLT~~dvSV~~sV~~d~srVka--Di-----~~~G~IhCACWT~-DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 129 VLTARDVSVLPSVHCDSSRVKA--DI-----KTSGLIHCACWTK-DGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EEecCceeEeeeeeeCCceEEE--ec-----cCCceEEEEEecC-cCCEEEEEeCCeEEEEEecCc
Confidence 53 3333345666653322221 22 2356799999999 66655554 444446889854
No 350
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.69 E-value=0.015 Score=45.37 Aligned_cols=186 Identities=11% Similarity=0.096 Sum_probs=107.7
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEee----------CCCeEEEEeCCCCcccccccccccc
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSS----------EDKTLRIFSLPENGISYDVNACSLA 104 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~----------~dg~i~iwd~~~~~~~~~~~~~~~~ 104 (279)
+++++|..+++.+.... .+..-.+..+|+++.+++++ +.-.|.+||..+.....+.
T Consensus 18 rv~viD~d~~k~lGmi~--------~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI------ 83 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMID--------TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI------ 83 (342)
T ss_dssp EEEEEETTTTEEEEEEE--------EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE------
T ss_pred eEEEEECCCCcEEEEee--------cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE------
Confidence 67888888888665321 12234467899999888643 3457999999976443321
Q ss_pred CCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecC--CCcEEEEECCCCeeeEEEeccCccccccceeeEEEC
Q 023672 105 KDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182 (279)
Q Consensus 105 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (279)
....+.....+ -.+...+++.++++++.... ...|.|-|+..++.+..+..++. ..+-=+
T Consensus 84 ----------~iP~k~R~~~~-~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC-------~~iyP~ 145 (342)
T PF06433_consen 84 ----------EIPPKPRAQVV-PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC-------WLIYPS 145 (342)
T ss_dssp ----------EETTS-B--BS---GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE-------EEEEEE
T ss_pred ----------ecCCcchheec-ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE-------EEEEec
Confidence 22211111111 13334566888988877643 45799999999999988887652 222222
Q ss_pred CCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCC-ceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672 183 PTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG-IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (279)
Q Consensus 183 ~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~ 256 (279)
++..+...|.||.+.-..+...++....... .+..... .+..-++.. .+..++--+.+|.|+--|+....
T Consensus 146 ~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~---~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 146 GNRGFSMLCGDGSLLTVTLDADGKEAQKSTK---VFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp ETTEEEEEETTSCEEEEEETSTSSEEEEEEE---ESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSS
T ss_pred CCCceEEEecCCceEEEEECCCCCEeEeecc---ccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCc
Confidence 2334444679999999999876665433222 2222222 233445555 44444446788888888776543
No 351
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.015 Score=43.98 Aligned_cols=183 Identities=10% Similarity=0.149 Sum_probs=104.6
Q ss_pred cCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccC
Q 023672 56 SSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASD 135 (279)
Q Consensus 56 ~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 135 (279)
+.|-...|.++.|+|+.+.|++......-.|+=-.+|.......... .+..+.| +..
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-------------~~DpE~I----------eyi 137 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-------------FSDPETI----------EYI 137 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-------------cCChhHe----------EEe
Confidence 34555669999999999988877776666665444444322211110 1111122 224
Q ss_pred CCCcEEEEecCCCcEEEEECCCCeeeE-----EEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCcee
Q 023672 136 PTSCVFASTTRDHPIHLWDATTGLLRC-----TYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFE 209 (279)
Q Consensus 136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~ 209 (279)
.+++++++--.++.+.++.+....... .+......+.......++|.|....++.. .-.-+.||..........
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~ 217 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLS 217 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccc
Confidence 466677776777888777766542211 22322222224478899999998877766 666677776664222221
Q ss_pred eeeeccc--ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 210 KYSTLKG--NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 210 ~~~~~~~--~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
....... ...-.-..+.++.|++..+.+|+-+.+++.+.-.|. .|+++..+.
T Consensus 218 ~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~-~G~~~~~ls 271 (316)
T COG3204 218 VHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDL-SGEVIELLS 271 (316)
T ss_pred cccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEec-CCCeeeeEE
Confidence 1111100 000012357889999867788888888888877775 444444443
No 352
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=3.5e-05 Score=65.85 Aligned_cols=130 Identities=13% Similarity=0.137 Sum_probs=95.1
Q ss_pred ccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--cCCeEEEEEccCCCCc
Q 023672 131 MSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--YNKSVRVFDVHRPGRD 207 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~d~~i~~~d~~~~~~~ 207 (279)
+++|+.+.++|+.|+..|.|+++++.+|........|.. .|+.+.-+.+|..++ ++ ...-..+|++...+
T Consensus 1106 c~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-----avT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~-- 1178 (1516)
T KOG1832|consen 1106 CIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-----AVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTG-- 1178 (1516)
T ss_pred eEEeecCCceEEeeeccceEEEEEccCcccccccccccc-----ccccccccCCcceeeeeccccCchHHHhcccccc--
Confidence 567899999999999999999999999999888888887 899999899998776 33 34467899997522
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEE-Eee---cCCCEEEEEEccCC
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYV-LHG---QEGGVTHVSKLSSA 277 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~-~~~---~~~~v~~~~~spdg 277 (279)
.....+ ..-.++.|+. ..+.-+.|+......+||+.++.++.+ +.+ .+-.-....|||+.
T Consensus 1179 -~~~Hsf--------~ed~~vkFsn-~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D 1242 (1516)
T KOG1832|consen 1179 -GPRHSF--------DEDKAVKFSN-SLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCD 1242 (1516)
T ss_pred -Cccccc--------cccceeehhh-hHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCc
Confidence 111122 2345789988 566666666667789999999987655 322 11122567788864
No 353
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.56 E-value=0.002 Score=52.88 Aligned_cols=127 Identities=10% Similarity=0.120 Sum_probs=68.9
Q ss_pred EEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEE-EccC
Q 023672 125 FCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVF-DVHR 203 (279)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~-d~~~ 203 (279)
+...|..+..+|+|++++.++ ||...++.....+... .+ ......|.+++++.+.-.++.|.++ ++..
T Consensus 31 ~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~--~G--------~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~ 99 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKA--FG--------SGLSFVWSSRNRYAVLESSSTIKIYKNFKN 99 (443)
T ss_dssp -SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEE--EE--------E-SEEEE-TSSEEEEE-TTS-EEEEETTEE
T ss_pred CCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccc--cC--------ceeEEEEecCccEEEEECCCeEEEEEcCcc
Confidence 334466677799999999855 7777777744333322 11 3347889997665554468889996 3322
Q ss_pred CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 204 PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
. ..+ .+. ....+..+- + |.+|+..+. +.|.+||+.+++.+..+... +|..+.|+++|.+
T Consensus 100 -~-~~k---~i~-----~~~~~~~If--~--G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 100 -E-VVK---SIK-----LPFSVEKIF--G--GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL 158 (443)
T ss_dssp ---TT-------------SS-EEEEE-----SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSE
T ss_pred -c-cce---EEc-----CCcccceEE--c--CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCE
Confidence 1 000 110 011122222 2 566666654 48999999999999998843 4899999999863
No 354
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.55 E-value=0.00039 Score=37.19 Aligned_cols=34 Identities=21% Similarity=0.444 Sum_probs=30.0
Q ss_pred CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL 257 (279)
Q Consensus 222 ~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~ 257 (279)
...|.+++|+| ...+||.|+.+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 45699999999 8999999999999999998 5554
No 355
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.49 E-value=0.04 Score=45.08 Aligned_cols=107 Identities=14% Similarity=0.126 Sum_probs=65.6
Q ss_pred CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCCceeeeeeccc
Q 023672 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
+..++.++.++.+..+|+.+|+.+....... ...+.. .+..++ .+.++.+..+|..++..... ....
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~-------~~~~~~--~~~~vy~~~~~g~l~ald~~tG~~~W~-~~~~-- 323 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKREYGS-------VNDFAV--DGGRIYLVDQNDRVYALDTRGGVELWS-QSDL-- 323 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeecCCC-------ccCcEE--ECCEEEEEcCCCeEEEEECCCCcEEEc-cccc--
Confidence 4456677788999999999998776654321 111222 234454 55899999999987421111 1011
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
.+ ....+.... +..|+.++.+|.|+..|..+|+.+...+.
T Consensus 324 ---~~-~~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 324 ---LH-RLLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred ---CC-CcccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 00 111222221 34677888999999999999998877654
No 356
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.48 E-value=0.028 Score=48.14 Aligned_cols=74 Identities=8% Similarity=0.179 Sum_probs=42.0
Q ss_pred ceeeEEECCCCCEEEEecCCeEEEEEccC--CCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHR--PGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
.|..+.|+|||..++.-.++.|.+--+.. ++. .. +........+-...+.++.|.+ ++.++ .+..++...+|.+
T Consensus 449 ~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~-l~~~~~l~~~l~~~~~~l~W~~-~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 449 PISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YA-LTNPREVGPGLGDTAVSLDWRT-GDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred CcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-ee-ecccEEeecccCCccccceEec-CCEEE-EEecCCCCceEEE
Confidence 68999999999998855467777733222 121 11 1111111122233467899999 77755 5455554445554
No 357
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.47 E-value=0.0073 Score=53.95 Aligned_cols=114 Identities=18% Similarity=0.334 Sum_probs=70.8
Q ss_pred eEEEEEccCCCeEEEe-----eCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672 63 LKGIKWSPDGSSFLTS-----SEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (279)
=+.|.|--||+++|+. ..-..|+|||.+ +.+.. ......+.-.+++| -|.
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns-----------------~se~~~~l~~~LsW-------kPs 252 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNS-----------------TSEPVEGLQHSLSW-------KPS 252 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhc-----------------ccCcccccccceee-------cCC
Confidence 3568999999999873 323799999988 33211 11111122234555 566
Q ss_pred CcEEEEe---cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE---e-cCCeEEEEEccC
Q 023672 138 SCVFAST---TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA---G-YNKSVRVFDVHR 203 (279)
Q Consensus 138 ~~~l~s~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~---~-~d~~i~~~d~~~ 203 (279)
|..+++- ..|+.|.++.- +|-....+......+.. .|..++|+.++..|++ . ....|++|-+.+
T Consensus 253 gs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~-~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 253 GSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEK-EVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCeEeeeeecCCCCcEEEEec-CCccccccccCCccccc-chheeeecCCCCceeeeecccccceEEEEEecC
Confidence 7777775 34557888884 44433333332221111 4889999999999984 3 445599998876
No 358
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.46 E-value=0.053 Score=46.04 Aligned_cols=133 Identities=14% Similarity=0.023 Sum_probs=77.8
Q ss_pred ccCCCCcEEEE-ecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c------------------
Q 023672 133 ASDPTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y------------------ 192 (279)
Q Consensus 133 ~~~~~~~~l~s-~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~------------------ 192 (279)
-++|+|+.+.. .-..+.+.+.|..+.+....+.... ....+.++|+|+++++. .
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg------npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~ 272 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG------NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDW 272 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC------CcccceECCCCCEEEEeccCcccCcceeeeccccCce
Confidence 45778876543 3345678888998888777776655 33467788888877633 1
Q ss_pred ----------------------CCeEEEEEccCCC-CceeeeeecccccCCCCCceEEEEEccCCCcE-EEEEeCCCcEE
Q 023672 193 ----------------------NKSVRVFDVHRPG-RDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM-LAIGSYSQTSA 248 (279)
Q Consensus 193 ----------------------d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~-l~~~~~dg~i~ 248 (279)
++.|.++|.++.. ........+. -......+.++| +|.+ ++++..+.++.
T Consensus 273 ~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIP-----VGKsPHGV~vSP-DGkylyVanklS~tVS 346 (635)
T PRK02888 273 VVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVP-----VPKNPHGVNTSP-DGKYFIANGKLSPTVT 346 (635)
T ss_pred EEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEE-----CCCCccceEECC-CCCEEEEeCCCCCcEE
Confidence 1335555554400 0001111121 123466889999 5555 55556689999
Q ss_pred EEecCCCeE------------EEEEeecCCCEEEEEEccCCC
Q 023672 249 IYREDNMEL------------LYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 249 ~wd~~~~~~------------~~~~~~~~~~v~~~~~spdg~ 278 (279)
|.|+.+.+. +.+...-. .....+|.++|.
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaevevGl-GPLHTaFDg~G~ 387 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPELGL-GPLHTAFDGRGN 387 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeeccCC-CcceEEECCCCC
Confidence 999987542 33333322 345577777763
No 359
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.43 E-value=0.012 Score=43.72 Aligned_cols=109 Identities=12% Similarity=0.070 Sum_probs=76.1
Q ss_pred CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
..+++.|+..+.+.--|..+|+......... .+.+-+.- -|++++.| ..|.+++.+.+++ ..........
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~------RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tG-s~~w~f~~~~- 93 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGV------RIECSAIV-VGDFVVLGCYSGGLYFLCVKTG-SQIWNFVILE- 93 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehhhCc------eeeeeeEE-ECCEEEEEEccCcEEEEEecch-hheeeeeehh-
Confidence 3478888999999999999998877655443 22222221 36677766 9999999999994 3333332221
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
.--......+ ++.++..|+.|+..+..|.++..++.+.+
T Consensus 94 ------~vk~~a~~d~-~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 94 ------TVKVRAQCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred ------hhccceEEcC-CCceEEEecCCCcEEEecccccceEEecc
Confidence 1112345667 88899999999999999999988887755
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.43 E-value=0.00078 Score=36.02 Aligned_cols=31 Identities=16% Similarity=0.370 Sum_probs=28.4
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCC
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLP 90 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~ 90 (279)
...|.+++|+|...+||.|+.||.|.+|.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 3569999999999999999999999999984
No 361
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=0.056 Score=43.94 Aligned_cols=181 Identities=14% Similarity=0.153 Sum_probs=110.0
Q ss_pred ceEEEEEccCCCeEEEeeC---CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 62 FLKGIKWSPDGSSFLTSSE---DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
.-..++++|+++.+.++.. ++++.+.|..+...... ..-+. .|..++++|++
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~------------------~~vG~-------~P~~~a~~p~g 171 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT------------------IPVGN-------TPTGVAVDPDG 171 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE------------------EecCC-------CcceEEECCCC
Confidence 4567899999987776655 67888888776543211 11110 23345678999
Q ss_pred cEEEEec-CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe--cC--CeEEEEEccCCCCceeeeee
Q 023672 139 CVFASTT-RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YN--KSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 139 ~~l~s~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d--~~i~~~d~~~~~~~~~~~~~ 213 (279)
..++.+. .++.|.+.|........ -..............+.++|++..+++. .+ +.+...|..++ ........
T Consensus 172 ~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~-~v~~~~~~ 249 (381)
T COG3391 172 NKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG-NVTATDLP 249 (381)
T ss_pred CeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCc-eEEEeccc
Confidence 9766665 78899999977665543 1111011111145689999999977743 33 58888888873 11111001
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEEecCCCeEEEEEeecCC---CEEEEEEccC
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQEG---GVTHVSKLSS 276 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~~~---~v~~~~~spd 276 (279)
.+-. ....+..+| .+..+... +..+.+.+.|..+......+..... .+..+++.+.
T Consensus 250 -----~~~~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 309 (381)
T COG3391 250 -----VGSG-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL 309 (381)
T ss_pred -----cccC-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence 1111 455689999 77766666 4458899999988877766554332 3555555553
No 362
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.36 E-value=0.018 Score=47.13 Aligned_cols=137 Identities=11% Similarity=0.045 Sum_probs=75.6
Q ss_pred CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEE
Q 023672 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (279)
Q Consensus 72 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 151 (279)
+..++.++.+|.+..+|..+++...... . .....+ ...+..++.++.++.+.
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~----------------~---~~~~~~---------~~~~~~vy~~~~~g~l~ 307 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQIVWKRE----------------Y---GSVNDF---------AVDGGRIYLVDQNDRVY 307 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCEEEeec----------------C---CCccCc---------EEECCEEEEEcCCCeEE
Confidence 4456667778888888888765422110 0 000000 11345777788899999
Q ss_pred EEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceE-EEEE
Q 023672 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMS-AIAF 230 (279)
Q Consensus 152 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~ 230 (279)
.+|..+|+.+......... ...+..+. ++.+++...+|.+.++|..++ +....... . ...+. ...+
T Consensus 308 ald~~tG~~~W~~~~~~~~----~~~sp~v~-~g~l~v~~~~G~l~~ld~~tG-~~~~~~~~------~-~~~~~s~P~~ 374 (394)
T PRK11138 308 ALDTRGGVELWSQSDLLHR----LLTAPVLY-NGYLVVGDSEGYLHWINREDG-RFVAQQKV------D-SSGFLSEPVV 374 (394)
T ss_pred EEECCCCcEEEcccccCCC----cccCCEEE-CCEEEEEeCCCEEEEEECCCC-CEEEEEEc------C-CCcceeCCEE
Confidence 9999999876654321110 11122221 344444558999999999884 32221111 1 11121 2222
Q ss_pred ccCCCcEEEEEeCCCcEEEEec
Q 023672 231 SPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 231 sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
. ++ .|+.++.||.|+.+++
T Consensus 375 -~-~~-~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 375 -A-DD-KLLIQARDGTVYAITR 393 (394)
T ss_pred -E-CC-EEEEEeCCceEEEEeC
Confidence 2 33 6777788999887764
No 363
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=97.36 E-value=0.018 Score=46.50 Aligned_cols=142 Identities=13% Similarity=0.040 Sum_probs=72.8
Q ss_pred CcccccCCCCcEEEEec-----------CCC-cEEEEECCC--Ceee--EEEeccCccccccceeeEEECCCCCEEEEec
Q 023672 129 PHMSASDPTSCVFASTT-----------RDH-PIHLWDATT--GLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFAGY 192 (279)
Q Consensus 129 ~~~~~~~~~~~~l~s~~-----------~d~-~i~i~d~~~--~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (279)
|..+++.++|+++++-. ..+ .|.+++-.+ |+.. ..+...-. ....+++.+++ ++++..
T Consensus 16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~-----~p~Gi~~~~~G-lyV~~~ 89 (367)
T TIGR02604 16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS-----MVTGLAVAVGG-VYVATP 89 (367)
T ss_pred CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC-----CccceeEecCC-EEEeCC
Confidence 44456688888777643 223 676665433 3322 22221111 45789999998 444444
Q ss_pred CCeEEEEEccCCCCc---eeee-eecccccCCCCCceEEEEEccCCCcEEEEEeCC-------------------CcEEE
Q 023672 193 NKSVRVFDVHRPGRD---FEKY-STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-------------------QTSAI 249 (279)
Q Consensus 193 d~~i~~~d~~~~~~~---~~~~-~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-------------------g~i~~ 249 (279)
....++.|....+.. .+.+ ..+......+......++|.| +|.+.++-+.. |.|.-
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 433334455432111 1111 112111011234577899999 77766654421 34555
Q ss_pred EecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 250 YREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 250 wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
+|..+++. ..+...-....+++|+|+|+
T Consensus 169 ~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~ 196 (367)
T TIGR02604 169 YNPDGGKL-RVVAHGFQNPYGHSVDSWGD 196 (367)
T ss_pred EecCCCeE-EEEecCcCCCccceECCCCC
Confidence 56555443 23322223457899999885
No 364
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.35 E-value=0.043 Score=42.35 Aligned_cols=154 Identities=14% Similarity=0.146 Sum_probs=85.4
Q ss_pred cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCc
Q 023672 70 PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHP 149 (279)
Q Consensus 70 ~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~ 149 (279)
..++.|+.|+.+| +.+++....... ....+..+|..+.. -++-+.+++-+ |+.
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~------------------~~i~~~~~I~ql~v-------l~~~~~llvLs-d~~ 57 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKP------------------TRILKLSSITQLSV-------LPELNLLLVLS-DGQ 57 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccc------------------eeEeecceEEEEEE-------ecccCEEEEEc-CCc
Confidence 3578899999999 899988321110 11112223666654 33334444444 599
Q ss_pred EEEEECCCCeeeEEEe---c------cCccccccceeeEE---ECCCCCEEEEecCCeEEEEEccCCCCce-eeeeeccc
Q 023672 150 IHLWDATTGLLRCTYR---A------YDAVDEITAAFSVA---FNPTGTKIFAGYNKSVRVFDVHRPGRDF-EKYSTLKG 216 (279)
Q Consensus 150 i~i~d~~~~~~~~~~~---~------~~~~~~~~~v~~~~---~~~~~~~l~~~~d~~i~~~d~~~~~~~~-~~~~~~~~ 216 (279)
+.++++..-....... . .........+...+ -......++++....|.+|....+...+ .....+
T Consensus 58 l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-- 135 (275)
T PF00780_consen 58 LYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEI-- 135 (275)
T ss_pred cEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEE--
Confidence 9999997654333110 0 00011111333333 1223345556677799999998743333 333333
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEE
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLY 259 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~ 259 (279)
.-...+.+++|.+ ..++.|..++ ..+.|+.++....
T Consensus 136 ---~lp~~~~~i~~~~---~~i~v~~~~~-f~~idl~~~~~~~ 171 (275)
T PF00780_consen 136 ---SLPDPPSSIAFLG---NKICVGTSKG-FYLIDLNTGSPSE 171 (275)
T ss_pred ---EcCCCcEEEEEeC---CEEEEEeCCc-eEEEecCCCCceE
Confidence 2236788999985 4666666444 7788988776543
No 365
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.22 E-value=0.038 Score=40.53 Aligned_cols=97 Identities=9% Similarity=0.045 Sum_probs=63.9
Q ss_pred eeEEECCCCCEEE-E-ecCCeEEEEEc--cCCCC-ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 177 FSVAFNPTGTKIF-A-GYNKSVRVFDV--HRPGR-DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 177 ~~~~~~~~~~~l~-~-~~d~~i~~~d~--~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
..++|+.+.+.++ . +.+-.|.-||. .++.. ..+.+..++.......-..-.++... +|.+.++.-..++|.-.|
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~-eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDT-EGNLYVATFNGGTVQKVD 239 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEcc-CCcEEEEEecCcEEEEEC
Confidence 5789998877776 4 37778877884 33211 11111112111011111233456666 788888888888999999
Q ss_pred cCCCeEEEEEeecCCCEEEEEEc
Q 023672 252 EDNMELLYVLHGQEGGVTHVSKL 274 (279)
Q Consensus 252 ~~~~~~~~~~~~~~~~v~~~~~s 274 (279)
..+|+.+.++.-....|++++|-
T Consensus 240 p~tGK~L~eiklPt~qitsccFg 262 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQITSCCFG 262 (310)
T ss_pred CCCCcEEEEEEcCCCceEEEEec
Confidence 99999999999888899999985
No 366
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.20 E-value=0.054 Score=40.40 Aligned_cols=102 Identities=13% Similarity=0.029 Sum_probs=66.3
Q ss_pred CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEE
Q 023672 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (279)
Q Consensus 72 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 151 (279)
|++++.|...|.+.+.+..++........+ +.|..- ....+++..+..++.|+...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~------------------~~vk~~------a~~d~~~glIycgshd~~~y 118 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL------------------ETVKVR------AQCDFDGGLIYCGSHDGNFY 118 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeeh------------------hhhccc------eEEcCCCceEEEecCCCcEE
Confidence 567888999999999998887442221111 111111 12366889999999999999
Q ss_pred EEECCCCeeeEEEeccCccccccceeeEEECC-CCCEEEEecCCeEEEEEcc
Q 023672 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNP-TGTKIFAGYNKSVRVFDVH 202 (279)
Q Consensus 152 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~d~~i~~~d~~ 202 (279)
..|.++..++.+.+..+. -..+-++.| ++.+.++...|.+.--..+
T Consensus 119 alD~~~~~cVykskcgG~-----~f~sP~i~~g~~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 119 ALDPKTYGCVYKSKCGGG-----TFVSPVIAPGDGSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EecccccceEEecccCCc-----eeccceecCCCceEEEEeccceEEEEccC
Confidence 999999988888776654 333455666 4555555555555444444
No 367
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0024 Score=56.19 Aligned_cols=103 Identities=19% Similarity=0.210 Sum_probs=66.3
Q ss_pred CcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeeccc
Q 023672 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
+..++.|+..|.+-..|.... ... .+.......+|++++|+.+|..++.| .+|.|.+||+.+ +...+.+...
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n-L~~---~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~-~k~l~~i~e~-- 171 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN-LGP---LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR-AKILKVITEH-- 171 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc-cch---hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC-Ccceeeeeec--
Confidence 336888888888988887653 111 12222223489999999999999999 999999999998 3444333222
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
...+.+ |.-+.+.. ++..++++...|. +|.+
T Consensus 172 -~ap~t~-vi~v~~t~-~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 -GAPVTG-VIFVGRTS-QNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -CCccce-EEEEEEeC-CCcEEEEccCCCc--eEEE
Confidence 122233 33444444 4457888877775 5543
No 368
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.13 E-value=0.081 Score=44.61 Aligned_cols=111 Identities=13% Similarity=0.111 Sum_probs=64.6
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE------------------ecCCeEEEEEc
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA------------------GYNKSVRVFDV 201 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~------------------~~d~~i~~~d~ 201 (279)
.++.++.+|.+...|.++|+.+........ .+..+| +..++. ..+|.+.-.|+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~~--------~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~ 373 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVEQ--------PMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDP 373 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeecc--------ccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeC
Confidence 577888899999999999998887654211 122333 211111 13577888888
Q ss_pred cCCCCceeeeeecccccC-CCCCce--EEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672 202 HRPGRDFEKYSTLKGNKE-GQAGIM--SAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~-~~~~~v--~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
.++....+.. ....... .-..+. ..+.. .+..|+.++.||.|+.+|..+|+.+-+.+.
T Consensus 374 ~tG~~~W~~~-~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 374 KTGKVVWEKR-EGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CCCcEeeEee-CCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 8753222111 0000000 000011 11222 446788888999999999999998877664
No 369
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.13 E-value=0.073 Score=40.56 Aligned_cols=154 Identities=17% Similarity=0.165 Sum_probs=84.8
Q ss_pred ceEEEEEccCCCeEEEee---CCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 62 FLKGIKWSPDGSSFLTSS---EDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
.+...+++++++.+|... ....+.++....... ....+..+..-.| ++++
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~--------------------~~~~g~~l~~PS~-------d~~g 77 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVR--------------------PVLTGGSLTRPSW-------DPDG 77 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcce--------------------eeccCCccccccc-------cCCC
Confidence 688999999999877555 233444444332110 0112224444444 7777
Q ss_pred cEEEEecCCCcEEEEE-CCCCeeeE-EEeccCccccccceeeEEECCCCCEEE-Ee---cCCeEEEEEccCCCCc-eeee
Q 023672 139 CVFASTTRDHPIHLWD-ATTGLLRC-TYRAYDAVDEITAAFSVAFNPTGTKIF-AG---YNKSVRVFDVHRPGRD-FEKY 211 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d-~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~---~d~~i~~~d~~~~~~~-~~~~ 211 (279)
...+....+...+++. ..++.... ......... .|..+.++|||..++ .. .++.|.+--+...... ...+
T Consensus 78 ~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~---~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l 154 (253)
T PF10647_consen 78 WVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRG---RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRL 154 (253)
T ss_pred CEEEEEcCCCceEEEEecCCCcceeEEecccccCC---ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCccee
Confidence 6666666666666663 33333221 222221101 689999999998887 32 3677877766542222 1111
Q ss_pred eecccccCCCCCceEEEEEccCCCcEEEEEeCCCc
Q 023672 212 STLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT 246 (279)
Q Consensus 212 ~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~ 246 (279)
.............+..+.|.+ ++.+++.+...+.
T Consensus 155 ~~~~~~~~~~~~~v~~v~W~~-~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 155 TGPRRVAPPLLSDVTDVAWSD-DSTLVVLGRSAGG 188 (253)
T ss_pred ccceEecccccCcceeeeecC-CCEEEEEeCCCCC
Confidence 111111123346789999999 7777776655443
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.12 E-value=0.095 Score=43.20 Aligned_cols=112 Identities=15% Similarity=0.109 Sum_probs=65.4
Q ss_pred ccCCCCcEEEEe-cCCC----cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee--c---------CCe
Q 023672 133 ASDPTSCVFAST-TRDH----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG--Y---------NKS 195 (279)
Q Consensus 133 ~~~~~~~~l~s~-~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~--~---------d~~ 195 (279)
.++|+++++|.+ +..| .|+++|+.+++.+...-... ....+.|.++++.++ +. . ...
T Consensus 130 ~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~------~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 130 SVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP------KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE------ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc------ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 458999988865 3334 59999999997664321111 223499999988776 43 2 224
Q ss_pred EEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC-C---CcEEEEecCCC
Q 023672 196 VRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY-S---QTSAIYREDNM 255 (279)
Q Consensus 196 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~-d---g~i~~wd~~~~ 255 (279)
|+.|.+.++...-..+..- .........+..++ ++.+|+..+. . ..+++.|+..+
T Consensus 204 v~~~~~gt~~~~d~lvfe~----~~~~~~~~~~~~s~-d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEE----PDEPFWFVSVSRSK-DGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-----TTCTTSEEEEEE-T-TSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCChHhCeeEEee----cCCCcEEEEEEecC-cccEEEEEEEccccCCeEEEEecccc
Confidence 7788887642221222111 11122366888999 6776664332 2 34788888764
No 371
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=97.11 E-value=0.0024 Score=33.06 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=27.2
Q ss_pred CceEEEEEccCCC--cEEEEEeCCCcEEEEecCC
Q 023672 223 GIMSAIAFSPTHT--GMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 223 ~~v~~~~~sp~~~--~~l~~~~~dg~i~~wd~~~ 254 (279)
+++.++.|+|.++ .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 3688999998555 6899988889999999995
No 372
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.03 E-value=0.14 Score=42.12 Aligned_cols=30 Identities=10% Similarity=0.297 Sum_probs=22.0
Q ss_pred CceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC
Q 023672 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 157 (279)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~ 157 (279)
+.+..+.| +.+. .|+....||.++++|+..
T Consensus 81 ~~iv~~~w-------t~~e-~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 81 GRIVGMGW-------TDDE-ELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred CCEEEEEE-------CCCC-eEEEEEcCCEEEEEeCCC
Confidence 57777777 4443 555667899999999863
No 373
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.06 Score=40.77 Aligned_cols=128 Identities=12% Similarity=0.129 Sum_probs=82.2
Q ss_pred EEEEecCCCc-EEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC-----CeEEEEEccCCCCceeeee
Q 023672 140 VFASTTRDHP-IHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN-----KSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 140 ~l~s~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d-----~~i~~~d~~~~~~~~~~~~ 212 (279)
-++.+-.-|+ ..++|..+.+...++....... ..-.=.|||||.+|++. .| |.|-|||.+.. +....
T Consensus 82 avafARrPGtf~~vfD~~~~~~pv~~~s~~~RH---fyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~---fqrvg 155 (366)
T COG3490 82 AVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH---FYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG---FQRVG 155 (366)
T ss_pred eEEEEecCCceEEEECCCCCcCcEEEecccCce---eecccccCCCCcEEEeecCCCCCCCceEEEEecccc---cceec
Confidence 4566666665 4578998888777766554322 22245799999999965 33 78999999853 23323
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeC------------------CCcEEEEecCCCeEEEE--Ee--ecCCCEEE
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY------------------SQTSAIYREDNMELLYV--LH--GQEGGVTH 270 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~------------------dg~i~~wd~~~~~~~~~--~~--~~~~~v~~ 270 (279)
.+ ..|.-....+.|.+ +|..|+.+.. .-++.+.|..+|+++.+ +. .+.-.|+.
T Consensus 156 E~----~t~GiGpHev~lm~-DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH 230 (366)
T COG3490 156 EF----STHGIGPHEVTLMA-DGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH 230 (366)
T ss_pred cc----ccCCcCcceeEEec-CCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence 33 56666777899999 7887776632 11344556566665543 22 23346788
Q ss_pred EEEccCCC
Q 023672 271 VSKLSSAY 278 (279)
Q Consensus 271 ~~~spdg~ 278 (279)
++.-+||+
T Consensus 231 ld~g~dgt 238 (366)
T COG3490 231 LDIGRDGT 238 (366)
T ss_pred eeeCCCCc
Confidence 88888875
No 374
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0027 Score=55.94 Aligned_cols=83 Identities=19% Similarity=0.211 Sum_probs=61.9
Q ss_pred CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 184 TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 184 ~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
.+..++.| ..|.+...|+..+-.+ + .....-.++|++++|+. +|.+++.|-.+|.|.+||+..++++..+.
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~------~-~~ne~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~ 169 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGP------L-HQNERVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVIT 169 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccch------h-hcCCccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeee
Confidence 34566666 7788988888763111 1 11133467899999999 99999999999999999999999888888
Q ss_pred ecCCCEEEEEEc
Q 023672 263 GQEGGVTHVSKL 274 (279)
Q Consensus 263 ~~~~~v~~~~~s 274 (279)
.|..+.+++-++
T Consensus 170 e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 170 EHGAPVTGVIFV 181 (1206)
T ss_pred ecCCccceEEEE
Confidence 777766665443
No 375
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.97 E-value=0.0082 Score=48.23 Aligned_cols=63 Identities=13% Similarity=0.127 Sum_probs=44.5
Q ss_pred CCCCcEEEEe---------cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672 135 DPTSCVFAST---------TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (279)
Q Consensus 135 ~~~~~~l~s~---------~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~ 203 (279)
|||+++++.. +..+.+.++|+.+++....... .. .+....|+|+|+.++-..++.|.++++.+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~-----~~~~~~~sP~g~~~~~v~~~nly~~~~~~ 72 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PP-----KLQDAKWSPDGKYIAFVRDNNLYLRDLAT 72 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ET-----TBSEEEE-SSSTEEEEEETTEEEEESSTT
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-cc-----ccccceeecCCCeeEEEecCceEEEECCC
Confidence 4566666653 2245789999999765443333 22 67789999999999988889999998876
No 376
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=96.95 E-value=0.13 Score=40.92 Aligned_cols=168 Identities=18% Similarity=0.243 Sum_probs=90.0
Q ss_pred CCceEEEEEccCCCeEEEeeCCCe------EEEEeCCCCcc-ccccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKT------LRIFSLPENGI-SYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~------i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
-+.+.++.+.+++..+++.+.+|. +..+++..... ........ ...+....+.+...-...+..+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~L~~~~G~~~~~~~~D~Egi 90 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILD--------MIPLRDPDGQPFPKNGLDPEGI 90 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEecc--------ceeccCCCCCcCCcCCCChhHe
Confidence 467899999976666777777777 65555543100 00000000 0001111122222122234445
Q ss_pred ccCCCCcEEEEecCC------CcEEEEECCCCeeeEEEeccC----------ccccccceeeEEECCCCCEEEEe-----
Q 023672 133 ASDPTSCVFASTTRD------HPIHLWDATTGLLRCTYRAYD----------AVDEITAAFSVAFNPTGTKIFAG----- 191 (279)
Q Consensus 133 ~~~~~~~~l~s~~~d------~~i~i~d~~~~~~~~~~~~~~----------~~~~~~~v~~~~~~~~~~~l~~~----- 191 (279)
++.+++.++++.-.+ ..|..++.. |+....+..+. .......+.+|+++|+|+.|++.
T Consensus 91 ~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l 169 (326)
T PF13449_consen 91 AVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPL 169 (326)
T ss_pred EEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccc
Confidence 566778788877667 788888876 76655553222 12234478899999999955422
Q ss_pred -cCC--e-------EEEEEcc--CCCCceeeeeecccccCC-----CCCceEEEEEccCCCcEEEE
Q 023672 192 -YNK--S-------VRVFDVH--RPGRDFEKYSTLKGNKEG-----QAGIMSAIAFSPTHTGMLAI 240 (279)
Q Consensus 192 -~d~--~-------i~~~d~~--~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~sp~~~~~l~~ 240 (279)
.|+ . ++++... +.+.....+ ...... ....+..+.+-+ ++.+|+.
T Consensus 170 ~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~---~y~ld~~~~~~~~~~isd~~al~-d~~lLvL 231 (326)
T PF13449_consen 170 KQDGPRANPDNGSPLRILRYDPKTPGEPVAEY---AYPLDPPPTAPGDNGISDIAALP-DGRLLVL 231 (326)
T ss_pred cCCCcccccccCceEEEEEecCCCCCccceEE---EEeCCccccccCCCCceeEEEEC-CCcEEEE
Confidence 122 1 5555444 322222222 111121 456788899999 7777664
No 377
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.93 E-value=0.11 Score=39.26 Aligned_cols=122 Identities=11% Similarity=0.170 Sum_probs=73.0
Q ss_pred ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEE
Q 023672 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVF 199 (279)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~ 199 (279)
.+..+.|.|. ++.++++....+.|..++. +|+.+..+..... .....|++..++.++++. .++.+.++
T Consensus 23 e~SGLTy~pd------~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~----~D~EgI~y~g~~~~vl~~Er~~~L~~~ 91 (248)
T PF06977_consen 23 ELSGLTYNPD------TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGF----GDYEGITYLGNGRYVLSEERDQRLYIF 91 (248)
T ss_dssp -EEEEEEETT------TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEEE
T ss_pred CccccEEcCC------CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCC----CCceeEEEECCCEEEEEEcCCCcEEEE
Confidence 4778877443 3557777788888988886 5788888776542 156789998888888877 79999999
Q ss_pred EccCCCCce--eeeeeccccc-CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 200 DVHRPGRDF--EKYSTLKGNK-EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 200 d~~~~~~~~--~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
++....... .....+.-.. ..+...+-.++|+| .+..|+.+-+..-..||.++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~-~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 92 TIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDP-KTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EE----TT--EEEEEEEE---S---SS--EEEEEET-TTTEEEEEEESSSEEEEEEES
T ss_pred EEeccccccchhhceEEecccccCCCcceEEEEEcC-CCCEEEEEeCCCChhhEEEcc
Confidence 995433222 1112222111 23456689999999 666666667766666776653
No 378
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=96.92 E-value=0.21 Score=43.39 Aligned_cols=105 Identities=12% Similarity=0.081 Sum_probs=68.2
Q ss_pred CCcEEEEecCCCcEEEEECCC-------C----e---------eeEEEeccCccccccceeeEEEC--CCCCEEEEe-cC
Q 023672 137 TSCVFASTTRDHPIHLWDATT-------G----L---------LRCTYRAYDAVDEITAAFSVAFN--PTGTKIFAG-YN 193 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~-------~----~---------~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~-~d 193 (279)
+...|+.|..||.|.+|.+++ . . +...+... ..+++++++ ...++||+| ..
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~------~SaWGLdIh~~~~~rlIAVSsNs 186 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVG------ASAWGLDIHDYKKSRLIAVSSNS 186 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecC------CceeEEEEEecCcceEEEEecCC
Confidence 455789999999999997632 0 0 11111111 278999998 888899977 77
Q ss_pred CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC----Cc-EEEEEeCCCcEEEEec
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH----TG-MLAIGSYSQTSAIYRE 252 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~-~l~~~~~dg~i~~wd~ 252 (279)
..|.||-+............ ..+...|.+|+|-+++ |. .+++++-.|.+.+|++
T Consensus 187 ~~VTVFaf~l~~~r~~~~~s-----~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 187 QEVTVFAFALVDERFYHVPS-----HQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEEEeccccccccccc-----cccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 78888766542111111101 2355678899998732 22 7888899999888887
No 379
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.92 E-value=0.18 Score=41.59 Aligned_cols=114 Identities=23% Similarity=0.257 Sum_probs=65.1
Q ss_pred ceEEEEEccCCCeEEEe-eCC----CeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672 62 FLKGIKWSPDGSSFLTS-SED----KTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~-~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (279)
.+...+++|++++||.+ +.. ..++++|+.+++..... +.. .....+.| .+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~---------------i~~---~~~~~~~W-------~~ 179 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG---------------IEN---PKFSSVSW-------SD 179 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE---------------EEE---EESEEEEE-------CT
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc---------------ccc---cccceEEE-------eC
Confidence 34467899999988843 333 45999999987442110 000 01112555 66
Q ss_pred CCcEEEEecCC-----------CcEEEEECCCCeee--EEEeccCccccccceeeEEECCCCCEEEE--e--cC-CeEEE
Q 023672 137 TSCVFASTTRD-----------HPIHLWDATTGLLR--CTYRAYDAVDEITAAFSVAFNPTGTKIFA--G--YN-KSVRV 198 (279)
Q Consensus 137 ~~~~l~s~~~d-----------~~i~i~d~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~--~d-~~i~~ 198 (279)
++..|+....+ ..|..|.+.+.... ..+..... .. ....+..++++++++. . .+ ..+.+
T Consensus 180 d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~--~~-~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 180 DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDE--PF-WFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTC--TT-SEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCC--Cc-EEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 76665554322 24788888776443 33333322 10 1457889999999873 2 33 56888
Q ss_pred EEccC
Q 023672 199 FDVHR 203 (279)
Q Consensus 199 ~d~~~ 203 (279)
.|+..
T Consensus 257 ~d~~~ 261 (414)
T PF02897_consen 257 LDLDD 261 (414)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 88876
No 380
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.87 E-value=0.014 Score=52.12 Aligned_cols=155 Identities=14% Similarity=0.142 Sum_probs=87.9
Q ss_pred ceEEEEEccCCCeEEE--eeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 62 FLKGIKWSPDGSSFLT--SSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
.|..+...+|+...++ .+.+-.|..||+++-..........+ ..............++.|+|.. |.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl------~~s~ts~ek~vf~~~~~wnP~v----p~-- 169 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPL------KNSATSFEKPVFQLKNVWNPLV----PL-- 169 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhcccc------ccccchhccccccccccccCCc----cc--
Confidence 4556666778765443 34455788999975432110000000 0001222333455667776652 11
Q ss_pred EEEEecCCCcEEEEECCCCe-eeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccc
Q 023672 140 VFASTTRDHPIHLWDATTGL-LRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~ 217 (279)
..+.+..|+.|++..+.... ....+.... ..++++|+|.|+.+++| ..|++.-|-..- +....+...
T Consensus 170 n~av~l~dlsl~V~~~~~~~~~v~s~p~t~------~~Tav~WSprGKQl~iG~nnGt~vQy~P~l-----eik~~ip~P 238 (1405)
T KOG3630|consen 170 NSAVDLSDLSLRVKSTKQLAQNVTSFPVTN------SQTAVLWSPRGKQLFIGRNNGTEVQYEPSL-----EIKSEIPEP 238 (1405)
T ss_pred hhhhhccccchhhhhhhhhhhhhcccCccc------ceeeEEeccccceeeEecCCCeEEEeeccc-----ceeecccCC
Confidence 45667778888887765432 222223222 67899999999999999 889888876653 111122211
Q ss_pred cCCCCCceEEEEEccCCCcEEEE
Q 023672 218 KEGQAGIMSAIAFSPTHTGMLAI 240 (279)
Q Consensus 218 ~~~~~~~v~~~~~sp~~~~~l~~ 240 (279)
-......|.+++|-. ...+|+.
T Consensus 239 p~~e~yrvl~v~Wl~-t~eflvv 260 (1405)
T KOG3630|consen 239 PVEENYRVLSVTWLS-TQEFLVV 260 (1405)
T ss_pred CcCCCcceeEEEEec-ceeEEEE
Confidence 112257899999977 5555554
No 381
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.81 E-value=0.073 Score=45.72 Aligned_cols=138 Identities=10% Similarity=0.039 Sum_probs=69.8
Q ss_pred ccccCCCCcEEEEec------CCC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecC--CeEEEEE
Q 023672 131 MSASDPTSCVFASTT------RDH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYN--KSVRVFD 200 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~------~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d--~~i~~~d 200 (279)
..+++|+|+.++... .|. .|.+++. .+.. ..+.. .. ....-.|+|+|..+....| ..+++.+
T Consensus 354 spaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~-~~lt~-g~-----~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 354 SAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVA-VQVLE-GH-----SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcc-eeeec-CC-----CCCCceECCCCCceEEEecCcceEEEec
Confidence 346789999887665 243 4555554 2222 22221 11 3567899999877663322 2233332
Q ss_pred ccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEE---EecCCCeE-E---EEEe-ecCCCEEEEE
Q 023672 201 VHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAI---YREDNMEL-L---YVLH-GQEGGVTHVS 272 (279)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~---wd~~~~~~-~---~~~~-~~~~~v~~~~ 272 (279)
-...+........-........+.|..+.||| +|..++... +|.|++ -....|+. + ..+. .-...+.++.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSp-DG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~ 503 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSR-DGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD 503 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECC-CCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence 22111110000000000002245699999999 777766655 477776 44344431 1 1122 2233468889
Q ss_pred EccCCC
Q 023672 273 KLSSAY 278 (279)
Q Consensus 273 ~spdg~ 278 (279)
|.+++.
T Consensus 504 W~~~~~ 509 (591)
T PRK13616 504 WRTGDS 509 (591)
T ss_pred EecCCE
Confidence 988874
No 382
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.77 E-value=0.026 Score=41.32 Aligned_cols=106 Identities=15% Similarity=0.240 Sum_probs=69.5
Q ss_pred EEEEEccCCCeEE-EeeCCCeEEEEe--CCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE
Q 023672 64 KGIKWSPDGSSFL-TSSEDKTLRIFS--LPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV 140 (279)
Q Consensus 64 ~~~~~~~~~~~l~-t~~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 140 (279)
+.++|+.+.+.+. +-+.+-+|.-|| ..++........ +......+.- ...|+.+++..+|.+
T Consensus 161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i-------------~dlrk~~~~e--~~~PDGm~ID~eG~L 225 (310)
T KOG4499|consen 161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVI-------------FDLRKSQPFE--SLEPDGMTIDTEGNL 225 (310)
T ss_pred ccccccccCcEEEEEccCceEEeeeecCCCcccccCccee-------------EEeccCCCcC--CCCCCcceEccCCcE
Confidence 4578887776554 556677787787 555543221110 1111111110 113556677788888
Q ss_pred EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCC-CCEEE
Q 023672 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPT-GTKIF 189 (279)
Q Consensus 141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~ 189 (279)
.+++-..++|...|..+|+.+..+..+.. .+++++|-.. -..++
T Consensus 226 ~Va~~ng~~V~~~dp~tGK~L~eiklPt~-----qitsccFgGkn~d~~y 270 (310)
T KOG4499|consen 226 YVATFNGGTVQKVDPTTGKILLEIKLPTP-----QITSCCFGGKNLDILY 270 (310)
T ss_pred EEEEecCcEEEEECCCCCcEEEEEEcCCC-----ceEEEEecCCCccEEE
Confidence 89888899999999999999999998876 8999999644 23444
No 383
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.74 E-value=0.19 Score=39.23 Aligned_cols=159 Identities=14% Similarity=0.147 Sum_probs=78.1
Q ss_pred CCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCC
Q 023672 58 IPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPT 137 (279)
Q Consensus 58 ~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 137 (279)
.-.+.+..+.-++||+++++++.-....-||--.... ..........|..+.| +|+
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-----------------~~~~r~~~~riq~~gf-------~~~ 197 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-----------------QPHNRNSSRRIQSMGF-------SPD 197 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS------------------EEEE--SSS-EEEEEE--------TT
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-----------------eEEccCccceehhcee-------cCC
Confidence 3446788888899999998887766666776542111 0012223457777776 667
Q ss_pred CcEEEEecCCCcEEEEEC-CCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeeccc
Q 023672 138 SCVFASTTRDHPIHLWDA-TTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKG 216 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 216 (279)
+.+.+.+ ..|.|+.=+. ...+.-.. .........-.+..++|.+++...++|..|.+.+ -..+++..+.....
T Consensus 198 ~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~--S~DgGktW~~~~~~-- 271 (302)
T PF14870_consen 198 GNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV--STDGGKTWQKDRVG-- 271 (302)
T ss_dssp S-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE--ESSTTSS-EE-GGG--
T ss_pred CCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEEEecCCCCEEEEeCCccEEE--eCCCCccceECccc--
Confidence 6665544 7888887762 22221111 1011101111478899999988888887775432 33335555544332
Q ss_pred ccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672 217 NKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 250 (279)
Q Consensus 217 ~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w 250 (279)
..-...++.+.|.+ ...-++.| .+|.|.-|
T Consensus 272 --~~~~~n~~~i~f~~-~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 272 --ENVPSNLYRIVFVN-PDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp --TTSSS---EEEEEE-TTEEEEE--STTEEEEE
T ss_pred --cCCCCceEEEEEcC-CCceEEEC-CCcEEEEe
Confidence 23345688899977 55555554 57776544
No 384
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.68 E-value=0.2 Score=38.70 Aligned_cols=132 Identities=12% Similarity=0.055 Sum_probs=75.3
Q ss_pred CCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee-ec
Q 023672 136 PTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS-TL 214 (279)
Q Consensus 136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~-~~ 214 (279)
..++.|+.|..+| |.++++............. .|..+...|+-+.+++-.|+.++++++..-........ ..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~------~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~ 77 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLS------SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAF 77 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecc------eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccc
Confidence 3567889998888 8999983322222222111 58889999988888877779999999986321111000 00
Q ss_pred -c----cccCCCCCceEEEE--EccCCCcEEEEEeCCCcEEEEecCCC-----eEEEEEeecCCCEEEEEEccC
Q 023672 215 -K----GNKEGQAGIMSAIA--FSPTHTGMLAIGSYSQTSAIYREDNM-----ELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 215 -~----~~~~~~~~~v~~~~--~sp~~~~~l~~~~~dg~i~~wd~~~~-----~~~~~~~~~~~~v~~~~~spd 276 (279)
. ...-.....+..++ -...+...|+.+ ...+|.+|..... .....+.. ...+.+++|.++
T Consensus 78 ~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~l-p~~~~~i~~~~~ 149 (275)
T PF00780_consen 78 PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISL-PDPPSSIAFLGN 149 (275)
T ss_pred cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEc-CCCcEEEEEeCC
Confidence 0 00011223344444 122133444444 4558888877653 34555553 467788888754
No 385
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.61 E-value=0.015 Score=42.27 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=60.0
Q ss_pred CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEE
Q 023672 72 GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIH 151 (279)
Q Consensus 72 ~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~ 151 (279)
+..+++|+.+|.|.+|.........+ ......+.+.+. +....++.+..+++.|+.|+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d----------------~~~s~~e~i~~~------Ip~~~~~~~~c~~~~dg~ir 127 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSD----------------RVCSGEESIDLG------IPNGRDSSLGCVGAQDGRIR 127 (238)
T ss_pred CceEEeecccceEEEecCCccchHHH----------------hhhcccccceec------cccccccceeEEeccCCcee
Confidence 45688999999999999873221111 111111122111 11234556888999999999
Q ss_pred EEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-E--ecCCeEEEEEccC
Q 023672 152 LWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-A--GYNKSVRVFDVHR 203 (279)
Q Consensus 152 i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~--~~d~~i~~~d~~~ 203 (279)
.|++.-.+.+.....+... ++.....+..++++. + +.|..++.|++..
T Consensus 128 ~~n~~p~k~~g~~g~h~~~----~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 128 ACNIKPNKVLGYVGQHNFE----SGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeccccCceeeeeccccCC----CcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 9999877665554444310 233333344444444 3 4666666776654
No 386
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.54 E-value=0.18 Score=43.32 Aligned_cols=116 Identities=16% Similarity=0.162 Sum_probs=72.4
Q ss_pred EEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (279)
Q Consensus 64 ~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 143 (279)
.-+.-+.-++.-++-+....+.|||...+..... -.....+.|.++.| ...|+++.+++
T Consensus 33 ~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~----------------~~f~~~~~I~dLDW-----tst~d~qsiLa 91 (631)
T PF12234_consen 33 SLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYE----------------ESFSEDDPIRDLDW-----TSTPDGQSILA 91 (631)
T ss_pred ceEeecccCcEEEEECCCCEEEEEEcCCcEEEEe----------------eeecCCCceeecee-----eecCCCCEEEE
Confidence 3344444444333444455799999987653221 22345678999999 55899999999
Q ss_pred ecCCCcEEEEECC-----C----CeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672 144 TTRDHPIHLWDAT-----T----GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (279)
Q Consensus 144 ~~~d~~i~i~d~~-----~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~ 203 (279)
.+..+.|.+|--. . -..+..+....... .+|.+..|.++|.+++ |.++.+.|+|-.-
T Consensus 92 VGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk~~ 157 (631)
T PF12234_consen 92 VGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDKWL 157 (631)
T ss_pred EEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECCCc
Confidence 9999999988542 1 12333333222111 1678899999986655 4456777776543
No 387
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.51 E-value=0.29 Score=38.51 Aligned_cols=165 Identities=12% Similarity=0.145 Sum_probs=85.8
Q ss_pred CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEE
Q 023672 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHL 152 (279)
Q Consensus 73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i 152 (279)
+.|.+-+.||++.-..+............. ......++..- .+....+..++.-+..|.|+-
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~------------F~~~~dp~f~~------~~~~~~~~~~~F~Sy~G~v~~ 209 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKV------------FDPDDDPLFEH------PAYSRDGGRLYFVSYEGNVYS 209 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEE------------SSTTTS-B-S--------EEETTTTEEEEEBTTSEEEE
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccc------------cCCCCcccccc------cceECCCCeEEEEecCCEEEE
Confidence 457778889999888887433221111111 11111111111 011223445555778888888
Q ss_pred EECCCCee--eEEEeccCccc-----cccceeeEEECCCCCEEEE----ec-----CC--eEEEEEccCCCCceeeeeec
Q 023672 153 WDATTGLL--RCTYRAYDAVD-----EITAAFSVAFNPTGTKIFA----GY-----NK--SVRVFDVHRPGRDFEKYSTL 214 (279)
Q Consensus 153 ~d~~~~~~--~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~----~~-----d~--~i~~~d~~~~~~~~~~~~~~ 214 (279)
-|+..... ...+......+ .++.-.-+++++..+.|++ +. |+ .|.++|+.+. +.+..+
T Consensus 210 ~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~----krv~Ri 285 (342)
T PF06433_consen 210 ADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH----KRVARI 285 (342)
T ss_dssp EEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT----EEEEEE
T ss_pred EeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCC----eEEEEE
Confidence 88865532 22222211100 0113345788877665553 21 22 4777788774 333333
Q ss_pred ccccCCCCCceEEEEEccCCCcEEEEE-eCCCcEEEEecCCCeEEEEEeec
Q 023672 215 KGNKEGQAGIMSAIAFSPTHTGMLAIG-SYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~-~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
. -..++.++..+.++..+|++. ..++.+.+||..+|+++.++..-
T Consensus 286 ~-----l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 286 P-----LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp E-----EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred e-----CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 1 123577999999666677665 45789999999999999988854
No 388
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.50 E-value=0.1 Score=44.69 Aligned_cols=107 Identities=10% Similarity=0.250 Sum_probs=64.7
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC--CCCCEEE-EecCCeEEEEEcc-----CCCCce
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN--PTGTKIF-AGYNKSVRVFDVH-----RPGRDF 208 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~-~~~d~~i~~~d~~-----~~~~~~ 208 (279)
-++..++-+....+.|||.+.+.....-.. .....|.++.|. |+++.++ +|..+.|.+|--. ..+..+
T Consensus 40 ~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f----~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w 115 (631)
T PF12234_consen 40 IKKIAVVDSSRSELTIWDTRSGVLEYEESF----SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW 115 (631)
T ss_pred cCcEEEEECCCCEEEEEEcCCcEEEEeeee----cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence 343444444455799999998875444333 111278899885 6777666 7889999888542 212222
Q ss_pred eeeeecccccCCCC-CceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 209 EKYSTLKGNKEGQA-GIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 209 ~~~~~~~~~~~~~~-~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
..+..+.. ..++ .+|.+..|.+ +|.+++.+ ++.+.|+|-
T Consensus 116 ~~i~~i~i--~~~T~h~Igds~Wl~-~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 116 APIRKIDI--SSHTPHPIGDSIWLK-DGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred ceeEEEEe--ecCCCCCccceeEec-CCeEEEEe--CCEEEEECC
Confidence 22222211 2333 5789999999 87665544 356888874
No 389
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.47 E-value=0.0048 Score=53.52 Aligned_cols=181 Identities=10% Similarity=0.038 Sum_probs=98.0
Q ss_pred ccCCCCCceEEEEEcc-CCCeEEEeeCCCeEEEEeCCC--CccccccccccccCCCCcccceeeecCCCceEEEEeeCcc
Q 023672 55 TSSIPNNFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPE--NGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHM 131 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 131 (279)
.++|..+.|-.++|.. +...++ -.-|.+.|||++- |++.. ..........+..+.-+.|+|.
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~------------~l~v~~~~p~gs~~~~V~wcp~- 191 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQP------------QLEVTPITPYGSDPQLVSWCPI- 191 (1283)
T ss_pred HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhcccccc------------ceEEeecCcCCCCcceeeeccc-
Confidence 4667788888888854 322333 3336788998863 22111 1112233345566677888775
Q ss_pred cccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccc------cccceeeEEECCCCCEEEE-ecCCeEEEEEccCC
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVD------EITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRP 204 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~ 204 (279)
-++..++..+-.++.|++.+..+... ..+..|.... ..+.+.--..+|||..++. ..||.++.|.+.-.
T Consensus 192 ---~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~ 267 (1283)
T KOG1916|consen 192 ---AVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYIT 267 (1283)
T ss_pred ---ccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeee
Confidence 34556788888899999887765432 2222232200 0001111237899999985 49999998887532
Q ss_pred C-CceeeeeecccccCCCCC-ceEEEEEccC------CC--cEEEEEeC-CCcEEEEecCCCeEE
Q 023672 205 G-RDFEKYSTLKGNKEGQAG-IMSAIAFSPT------HT--GMLAIGSY-SQTSAIYREDNMELL 258 (279)
Q Consensus 205 ~-~~~~~~~~~~~~~~~~~~-~v~~~~~sp~------~~--~~l~~~~~-dg~i~~wd~~~~~~~ 258 (279)
+ ....+.... +.|.. +-.|.-|..+ -+ .++++++. +..+++|.-..++|+
T Consensus 268 g~~~~rclhew----kphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 268 GKIVHRCLHEW----KPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred ccccHhhhhcc----CCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 2 122232222 34442 2222223220 11 13444443 445999998877776
No 390
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.46 E-value=0.34 Score=38.84 Aligned_cols=174 Identities=16% Similarity=0.171 Sum_probs=79.1
Q ss_pred EEccCCCeEEEeeC-CC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEE
Q 023672 67 KWSPDGSSFLTSSE-DK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAS 143 (279)
Q Consensus 67 ~~~~~~~~l~t~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s 143 (279)
+|.+||+.|+.++. || .+.+.|+.+++..+... ..+...... .++|+++.++-
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTd-----------------g~g~~~~g~-------~~s~~~~~~~Y 97 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTD-----------------GPGDNTFGG-------FLSPDDRALYY 97 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE--------------------SS-B-TTT--------EE-TTSSEEEE
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECcc-----------------CCCCCccce-------EEecCCCeEEE
Confidence 56788977665444 55 45666777765432211 111111111 22566677665
Q ss_pred ecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEE--CCCCCEEEEe----cC-------------------CeEEE
Q 023672 144 TTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAF--NPTGTKIFAG----YN-------------------KSVRV 198 (279)
Q Consensus 144 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~----~d-------------------~~i~~ 198 (279)
......|+-.|+++.+....+..+.. .+-...| +.++..++.. .| ..|.-
T Consensus 98 v~~~~~l~~vdL~T~e~~~vy~~p~~-----~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 98 VKNGRSLRRVDLDTLEERVVYEVPDD-----WKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp EETTTEEEEEETTT--EEEEEE--TT-----EEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred EECCCeEEEEECCcCcEEEEEECCcc-----cccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 55566888899999887766666654 3333444 4456665521 11 23555
Q ss_pred EEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeC---CC-cEEEEecCC-CeEEEEEeecC--CCEEEE
Q 023672 199 FDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSY---SQ-TSAIYREDN-MELLYVLHGQE--GGVTHV 271 (279)
Q Consensus 199 ~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~---dg-~i~~wd~~~-~~~~~~~~~~~--~~v~~~ 271 (279)
.|+.++ +. +.+ + .....+..+.|+|.+..+|+-|-+ +. .-+||-+++ +.....+..+. ..+..=
T Consensus 173 idl~tG-~~-~~v--~-----~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE 243 (386)
T PF14583_consen 173 IDLKTG-ER-KVV--F-----EDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE 243 (386)
T ss_dssp EETTT---E-EEE--E-----EESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred EECCCC-ce-eEE--E-----ecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence 566652 11 111 1 124467789999977766666543 11 125665543 22222222222 234444
Q ss_pred EEccCCC
Q 023672 272 SKLSSAY 278 (279)
Q Consensus 272 ~~spdg~ 278 (279)
-|.|||.
T Consensus 244 fw~~DG~ 250 (386)
T PF14583_consen 244 FWVPDGS 250 (386)
T ss_dssp EE-TTSS
T ss_pred cccCCCC
Confidence 5777775
No 391
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.44 E-value=0.27 Score=37.46 Aligned_cols=133 Identities=15% Similarity=0.051 Sum_probs=73.2
Q ss_pred cccCCCCcEEEEec---CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEE-ccCCCC
Q 023672 132 SASDPTSCVFASTT---RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFD-VHRPGR 206 (279)
Q Consensus 132 ~~~~~~~~~l~s~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d-~~~~~~ 206 (279)
.++++++..++... ....+.++.. +........ .. .+...+|++++...+.. .+...+++. ...+..
T Consensus 29 ~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~-g~-----~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 29 PAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLT-GG-----SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred eEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeecc-CC-----ccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 35688888776655 2334555443 333333221 11 56778999998887765 556666663 222111
Q ss_pred ceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe---CCCcEEEEecC---CC------eEEEEEeecCCCEEEEEEc
Q 023672 207 DFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS---YSQTSAIYRED---NM------ELLYVLHGQEGGVTHVSKL 274 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~---~dg~i~~wd~~---~~------~~~~~~~~~~~~v~~~~~s 274 (279)
..... .. ..-...|.++.+|| +|..++... .++.|.+--+. .+ .++.........+.+++|.
T Consensus 101 ~~~~v-~~----~~~~~~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~ 174 (253)
T PF10647_consen 101 EPVEV-DW----PGLRGRITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS 174 (253)
T ss_pred eeEEe-cc----cccCCceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence 11111 11 11112799999999 777666554 34666666442 23 1122222334578999999
Q ss_pred cCCC
Q 023672 275 SSAY 278 (279)
Q Consensus 275 pdg~ 278 (279)
+++.
T Consensus 175 ~~~~ 178 (253)
T PF10647_consen 175 DDST 178 (253)
T ss_pred CCCE
Confidence 9874
No 392
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.41 E-value=0.33 Score=38.09 Aligned_cols=150 Identities=15% Similarity=0.146 Sum_probs=78.6
Q ss_pred EEEccCCC-eEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEe
Q 023672 66 IKWSPDGS-SFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (279)
Q Consensus 66 ~~~~~~~~-~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 144 (279)
-.|.++.. ++.+--..+.|.-|+..++.. ........+.... .++..+ .|+++
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-------------------~~~~~p~~~~~~~------~~d~~g-~Lv~~ 83 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKK-------------------RVFPSPGGFSSGA------LIDAGG-RLIAC 83 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCce-------------------EEEECCCCcccce------eecCCC-eEEEE
Confidence 34667666 444556677888888875532 1111122222221 223344 34433
Q ss_pred cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-c-----------CCeEEEEEccCCCCceeeee
Q 023672 145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-Y-----------NKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 145 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~-----------d~~i~~~d~~~~~~~~~~~~ 212 (279)
+.-+.+++.+++..+..+............+.+...|+|.+.+.. . -|.++.+|. . +...+..
T Consensus 84 --~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~-g~~~~l~- 158 (307)
T COG3386 84 --EHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-D-GGVVRLL- 158 (307)
T ss_pred --ccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-C-CCEEEee-
Confidence 234666777666553333322222222366788999999988854 3 133444443 1 2222211
Q ss_pred ecccccCCCCCceEEEEEccCCC-cEEEEEeCCCcEEEEecC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHT-GMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~-~~l~~~~~dg~i~~wd~~ 253 (279)
..+-...+.++||| ++ .++++=+..+.|.-|++.
T Consensus 159 ------~~~~~~~NGla~Sp-Dg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 159 ------DDDLTIPNGLAFSP-DGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred ------cCcEEecCceEECC-CCCEEEEEeCCCCeEEEEecC
Confidence 23334567899999 56 455555556778877764
No 393
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.41 E-value=0.42 Score=39.33 Aligned_cols=54 Identities=19% Similarity=0.153 Sum_probs=41.1
Q ss_pred CCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec-CCCEEEEEEccC
Q 023672 222 AGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ-EGGVTHVSKLSS 276 (279)
Q Consensus 222 ~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~-~~~v~~~~~spd 276 (279)
.+++..++.|| ++.++|.-..+|.+.+.+..-.+.+..+... ......|.|.-+
T Consensus 216 ~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 216 DGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECC
Confidence 35799999999 9999999999999999887666666665543 345677777654
No 394
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.40 E-value=0.36 Score=38.33 Aligned_cols=146 Identities=11% Similarity=0.126 Sum_probs=78.8
Q ss_pred eeecCCCceEEEEeeCcccccCC----CCcEEEEecC----------CCcEEEEECCCC----eeeEEEeccCccccccc
Q 023672 114 LVVTEGESVYDFCWFPHMSASDP----TSCVFASTTR----------DHPIHLWDATTG----LLRCTYRAYDAVDEITA 175 (279)
Q Consensus 114 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~l~s~~~----------d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~ 175 (279)
+.....+.+.+++.. .+.. ...+|+.|.. .|.|.++++... ..+..+.... ...+
T Consensus 18 ~~l~~~E~~~s~~~~----~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~---~~g~ 90 (321)
T PF03178_consen 18 FELEPNEHVTSLCSV----KLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTE---VKGP 90 (321)
T ss_dssp EEEETTEEEEEEEEE----EETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEE---ESS-
T ss_pred EECCCCceEEEEEEE----EEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEe---ecCc
Confidence 444455566655431 2222 2457777642 288999999884 1122111111 1127
Q ss_pred eeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC-
Q 023672 176 AFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN- 254 (279)
Q Consensus 176 v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~- 254 (279)
|++++-- +..++++.++.|.+|++.... .+...... .....+.++.... .+++.|..-..+.++..+.
T Consensus 91 V~ai~~~--~~~lv~~~g~~l~v~~l~~~~-~l~~~~~~-----~~~~~i~sl~~~~---~~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 91 VTAICSF--NGRLVVAVGNKLYVYDLDNSK-TLLKKAFY-----DSPFYITSLSVFK---NYILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp EEEEEEE--TTEEEEEETTEEEEEEEETTS-SEEEEEEE------BSSSEEEEEEET---TEEEEEESSSSEEEEEEETT
T ss_pred ceEhhhh--CCEEEEeecCEEEEEEccCcc-cchhhhee-----cceEEEEEEeccc---cEEEEEEcccCEEEEEEEcc
Confidence 7777766 344777888999999999743 22222222 1122566666544 5888888878888775443
Q ss_pred CeEEEEEee--cCCCEEEEEEccCC
Q 023672 255 MELLYVLHG--QEGGVTHVSKLSSA 277 (279)
Q Consensus 255 ~~~~~~~~~--~~~~v~~~~~spdg 277 (279)
...+..+.. ...+++++.|-+|+
T Consensus 160 ~~~l~~va~d~~~~~v~~~~~l~d~ 184 (321)
T PF03178_consen 160 NNKLILVARDYQPRWVTAAEFLVDE 184 (321)
T ss_dssp TE-EEEEEEESS-BEEEEEEEE-SS
T ss_pred CCEEEEEEecCCCccEEEEEEecCC
Confidence 332333322 23357777776554
No 395
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.37 E-value=0.29 Score=37.05 Aligned_cols=181 Identities=9% Similarity=0.099 Sum_probs=104.9
Q ss_pred CceEEEEEccCCCeEEEeeCCC--eEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDK--TLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
..--++.|..++.++-+.+.-| .|+.+|+.+++.......... .++. .++.+ ++
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~-----------~FgE--Git~~-----------~d 100 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPR-----------YFGE--GITIL-----------GD 100 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT-------------EE--EEEEE-----------TT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCcc-----------ccce--eEEEE-----------CC
Confidence 3455788877888777777766 688999998765322211110 0000 01100 22
Q ss_pred cEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccc
Q 023672 139 CVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGN 217 (279)
Q Consensus 139 ~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~ 217 (279)
++....-.++...+||..+-+.+..+.... .=+.++ .+++.|+.+ ....++.+|..+- +....+.....
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~------EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f-~~~~~i~V~~~- 170 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYPG------EGWGLT--SDGKRLIMSDGSSRLYFLDPETF-KEVRTIQVTDN- 170 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-SS------S--EEE--ECSSCEEEE-SSSEEEEE-TTT--SEEEEEE-EET-
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecCC------cceEEE--cCCCEEEEECCccceEEECCccc-ceEEEEEEEEC-
Confidence 233333457888999999998888887654 335666 456666655 7889999998762 22222211100
Q ss_pred cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee------------c---CCCEEEEEEccCCC
Q 023672 218 KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG------------Q---EGGVTHVSKLSSAY 278 (279)
Q Consensus 218 ~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~------------~---~~~v~~~~~spdg~ 278 (279)
...-..++-+.|- +|.+.|-.=....|...|..+|+.+..+.. + .+-.+++|+.|.+.
T Consensus 171 -g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 171 -GRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp -TEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred -CEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCC
Confidence 1112346667775 567777776777888999999998876631 0 23578999988653
No 396
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=96.35 E-value=0.42 Score=39.56 Aligned_cols=127 Identities=15% Similarity=0.163 Sum_probs=82.7
Q ss_pred EEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCC-------EEEEe-cCCeEEEEEccCCCCceeeee
Q 023672 141 FASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGT-------KIFAG-YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 141 l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------~l~~~-~d~~i~~~d~~~~~~~~~~~~ 212 (279)
+..|.....+.-.|++.|+.+.....+.. + -+.|.|..+ .-++| .+..|.-.|.+..+..+....
T Consensus 483 ~~dg~~~~kLykmDIErGkvveeW~~~dd------v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 483 YLDGGERDKLYKMDIERGKVVEEWDLKDD------V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred EecCCCcccceeeecccceeeeEeecCCc------c-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 34456667788889999999999888874 4 578888632 12245 788888888887553333221
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
.-. -.......+..-. ...+++.|+..|.|++||.-.-+....+++....|..+..+.+|++
T Consensus 556 sKd---Y~tKn~Fss~~tT--esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ 617 (776)
T COG5167 556 SKD---YKTKNKFSSGMTT--ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKH 617 (776)
T ss_pred ehh---ccccccccccccc--cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcE
Confidence 110 0111223333322 4568999999999999996554555566777777888888888763
No 397
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.33 E-value=0.021 Score=29.58 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=25.9
Q ss_pred CceEEEEEccCC---CeEEEeeCCCeEEEEeCCC
Q 023672 61 NFLKGIKWSPDG---SSFLTSSEDKTLRIFSLPE 91 (279)
Q Consensus 61 ~~v~~~~~~~~~---~~l~t~~~dg~i~iwd~~~ 91 (279)
++|.++.|+|+. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468999999844 5888888889999999984
No 398
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.00045 Score=55.45 Aligned_cols=128 Identities=16% Similarity=0.240 Sum_probs=90.2
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~ 212 (279)
.+.+.-++.++.+..+..||- .++......... ....++|..++..++ .. ..+.+.+||+.+. ...
T Consensus 43 ~~e~~nlavaca~tiv~~YD~-agq~~le~n~tg------~aldm~wDkegdvlavlAek~~piylwd~n~e-----ytq 110 (615)
T KOG2247|consen 43 RPEGHNLAVACANTIVIYYDK-AGQVILELNPTG------KALDMAWDKEGDVLAVLAEKTGPIYLWDVNSE-----YTQ 110 (615)
T ss_pred ecCCCceehhhhhhHHHhhhh-hcceecccCCch------hHhhhhhccccchhhhhhhcCCCeeechhhhh-----hHH
Confidence 455666888888888999994 444444444333 455788988887776 34 8899999999862 111
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAY 278 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~ 278 (279)
.+... ..|... -+.|++ +...++.|...|.+.|++..+.+.+-..-.|...+++++|.+.++
T Consensus 111 qLE~g-g~~s~s--ll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~ 172 (615)
T KOG2247|consen 111 QLESG-GTSSKS--LLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDY 172 (615)
T ss_pred HHhcc-CcchHH--HHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecccce
Confidence 22111 112222 278999 999999999999999999998887666655888889999988764
No 399
>PHA02713 hypothetical protein; Provisional
Probab=96.28 E-value=0.38 Score=41.36 Aligned_cols=104 Identities=9% Similarity=0.128 Sum_probs=52.5
Q ss_pred cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecC------CeEEEEEccCCCCceeeeeecccccCCC
Q 023672 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYN------KSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (279)
Q Consensus 149 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 221 (279)
.+..||..+.+-...-....... . .+++.. ++++.+ .|.+ ..+..||..+ ...+.....+ ...
T Consensus 433 ~ve~YDP~td~W~~v~~m~~~r~---~-~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~-~~~W~~~~~m----~~~ 502 (557)
T PHA02713 433 KVIRYDTVNNIWETLPNFWTGTI---R-PGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNT-YNGWELITTT----ESR 502 (557)
T ss_pred eEEEECCCCCeEeecCCCCcccc---c-CcEEEE-CCEEEEEeCCCCCCccceeEEEecCCC-CCCeeEcccc----Ccc
Confidence 47778887765432222211100 1 122222 344444 3433 2467888876 1123333233 222
Q ss_pred CCceEEEEEccCCCcEEEEEeCCC--cEEEEecCCCeEEEEEeecC
Q 023672 222 AGIMSAIAFSPTHTGMLAIGSYSQ--TSAIYREDNMELLYVLHGQE 265 (279)
Q Consensus 222 ~~~v~~~~~sp~~~~~l~~~~~dg--~i~~wd~~~~~~~~~~~~~~ 265 (279)
......+.+ ++.+.++|+.++ .+..||..+.+-....+.|.
T Consensus 503 r~~~~~~~~---~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~~~~ 545 (557)
T PHA02713 503 LSALHTILH---DNTIMMLHCYESYMLQDTFNVYTYEWNHICHQHS 545 (557)
T ss_pred cccceeEEE---CCEEEEEeeecceeehhhcCcccccccchhhhcC
Confidence 222333333 678999999888 78889988776444444443
No 400
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.12 Score=46.64 Aligned_cols=130 Identities=15% Similarity=0.118 Sum_probs=74.9
Q ss_pred CCCCcEE--EEecCCCcEEEEECCCCeeeE-----EEeccC-ccccccceeeEEECCCCC--EEEEecCCeEEEEEccCC
Q 023672 135 DPTSCVF--ASTTRDHPIHLWDATTGLLRC-----TYRAYD-AVDEITAAFSVAFNPTGT--KIFAGYNKSVRVFDVHRP 204 (279)
Q Consensus 135 ~~~~~~l--~s~~~d~~i~i~d~~~~~~~~-----~~~~~~-~~~~~~~v~~~~~~~~~~--~l~~~~d~~i~~~d~~~~ 204 (279)
.+|+... +..+.+-.|..||+++-..-. .+..+. .........++.|+|.-. .+++..|+.|++..+...
T Consensus 109 ~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~ 188 (1405)
T KOG3630|consen 109 FHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQL 188 (1405)
T ss_pred ccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhh
Confidence 4454433 333444478899997532111 111111 111122456788998743 233448999999887642
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEeec----CCCEEEEEEc
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHGQ----EGGVTHVSKL 274 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~----~~~v~~~~~s 274 (279)
.... .. .......++++|+| .|..++.|-..|++.-|-. +++....+... ...|.++.|-
T Consensus 189 ~~~v---~s-----~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl 252 (1405)
T KOG3630|consen 189 AQNV---TS-----FPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWL 252 (1405)
T ss_pred hhhh---cc-----cCcccceeeEEecc-ccceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeEEEEe
Confidence 1111 11 12245689999999 9999999999999988864 34433333322 2467787774
No 401
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.19 E-value=0.66 Score=39.27 Aligned_cols=168 Identities=11% Similarity=0.115 Sum_probs=86.4
Q ss_pred CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec-------
Q 023672 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------- 145 (279)
Q Consensus 73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~------- 145 (279)
..++.++.++.|.-+|.++++........... ..-..+.-.|. +. + ..++.++
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~---------------~~~~~i~ssP~---v~-~-~~v~vg~~~~~~~~ 170 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQV---------------PPGYTMTGAPT---IV-K-KLVIIGSSGAEFFA 170 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCc---------------CcceEecCCCE---EE-C-CEEEEecccccccc
Confidence 57778888999999999988664332111000 00000111110 01 1 2333433
Q ss_pred --CCCcEEEEECCCCeeeEEEeccCccccc---------------cce-eeEEECCCCCEEEEe-cCC------------
Q 023672 146 --RDHPIHLWDATTGLLRCTYRAYDAVDEI---------------TAA-FSVAFNPTGTKIFAG-YNK------------ 194 (279)
Q Consensus 146 --~d~~i~i~d~~~~~~~~~~~~~~~~~~~---------------~~v-~~~~~~~~~~~l~~~-~d~------------ 194 (279)
.++.|.-+|..+|+.+..+......... ..+ ...++.+.+..++.+ .++
T Consensus 171 ~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~ 250 (488)
T cd00216 171 CGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPG 250 (488)
T ss_pred CCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCC
Confidence 4678899999999988877653210000 001 124455555555544 443
Q ss_pred ------eEEEEEccCCCCceeeeeecccc---cCCCCCceEEEEEccCCC---cEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 195 ------SVRVFDVHRPGRDFEKYSTLKGN---KEGQAGIMSAIAFSPTHT---GMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 195 ------~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~sp~~~---~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
.|.-+|..++....+ ....... ......++. ......++ ..++.++.+|.+...|.++|+.+-...
T Consensus 251 ~~~~~~~l~Ald~~tG~~~W~-~~~~~~~~~~~~~~s~p~~-~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 251 DNLYTDSIVALDADTGKVKWF-YQTTPHDLWDYDGPNQPSL-ADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCCceeeEEEEcCCCCCEEEE-eeCCCCCCcccccCCCCeE-EeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 688889988532222 1111000 001111111 01111123 267788889999999999999876543
No 402
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=96.18 E-value=0.84 Score=40.39 Aligned_cols=91 Identities=15% Similarity=0.273 Sum_probs=57.0
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCC-ccc------cccccccccCCCCcccceeeecCCCceEEEEeeCccc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN-GIS------YDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMS 132 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 132 (279)
.-.|..|.++|+|++|+..+..| |.|-.+... ... .....|....-... .........|..+.|+|.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~---~~~~~~~~~i~qv~WhP~-- 157 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDER---FFTSNSSLEIKQVRWHPW-- 157 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechh---hccCCCCceEEEEEEcCC--
Confidence 34688899999999999888765 445454321 100 00111111110000 011233457899999997
Q ss_pred ccCCCCcEEEEecCCCcEEEEECCCC
Q 023672 133 ASDPTSCVFASTTRDHPIHLWDATTG 158 (279)
Q Consensus 133 ~~~~~~~~l~s~~~d~~i~i~d~~~~ 158 (279)
++++.+|+.-..|+++++||+...
T Consensus 158 --s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 158 --SESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred --CCCCCeEEEEecCCEEEEEecCCC
Confidence 667888999999999999999764
No 403
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=95.97 E-value=0.32 Score=35.51 Aligned_cols=105 Identities=11% Similarity=0.189 Sum_probs=62.2
Q ss_pred EEEEecCCCcEEEEECCC--CeeeEEEeccCccccccceeeEEECCCCCEEEEe----cCC---eEEEE-EccCC---CC
Q 023672 140 VFASTTRDHPIHLWDATT--GLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG----YNK---SVRVF-DVHRP---GR 206 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~d~---~i~~~-d~~~~---~~ 206 (279)
.|..+.....|.+|++.+ .+....+..-+ .|..+.++..|+++++- ... .+|+| +.+.. ..
T Consensus 30 ~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~------~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~ 103 (215)
T PF14761_consen 30 ALFVAASGCKVEVYDLEQEECPLLCTFSTVG------RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENS 103 (215)
T ss_pred eEEEEcCCCEEEEEEcccCCCceeEEEcchh------heeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCC
Confidence 444446677899999983 35566666554 88899999999999963 123 56665 22221 11
Q ss_pred ceeeeeeccc-----cc------------CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 207 DFEKYSTLKG-----NK------------EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 207 ~~~~~~~~~~-----~~------------~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
+... .+.+ .. -.-..++.+++..|..|++|+. + ++++.||.+..
T Consensus 104 ~v~v--RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg-~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 104 PVRV--RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVG-C-GNKLVLFTLKY 164 (215)
T ss_pred cEEE--EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEE-c-CCEEEEEEEEE
Confidence 1110 0000 00 0113467788888866666654 3 56788888753
No 404
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.88 E-value=0.62 Score=37.97 Aligned_cols=67 Identities=13% Similarity=0.128 Sum_probs=31.5
Q ss_pred ceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeeccccc-----------CCCCCceEEEEEccCCCcEE-EE
Q 023672 175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNK-----------EGQAGIMSAIAFSPTHTGML-AI 240 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~~~~sp~~~~~l-~~ 240 (279)
-|+.|.+|.|.++|+ +. ..|.|+.||+..+..+...-+...... ..-.+...-+..|. +|..| +|
T Consensus 313 LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~-DGkRlYvT 391 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL-DGKRLYVT 391 (461)
T ss_dssp ----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T-TSSEEEEE
T ss_pred ceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc-CCeEEEEE
Confidence 578999999999999 55 899999999998655443332221110 01123456788888 55544 44
Q ss_pred Ee
Q 023672 241 GS 242 (279)
Q Consensus 241 ~~ 242 (279)
.|
T Consensus 392 nS 393 (461)
T PF05694_consen 392 NS 393 (461)
T ss_dssp --
T ss_pred ee
Confidence 43
No 405
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.68 E-value=0.062 Score=39.23 Aligned_cols=103 Identities=8% Similarity=0.012 Sum_probs=55.8
Q ss_pred CcEEEEecCCCcEEEEECCCC-eeeEEEeccCccccccceeeEE-ECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeec
Q 023672 138 SCVFASTTRDHPIHLWDATTG-LLRCTYRAYDAVDEITAAFSVA-FNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTL 214 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~ 214 (279)
+..++.|+.+|.|.+|+...- ........... .+-++. --.++.+..++ .|+.|+.|+.... + .....
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e-----~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~-k---~~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEE-----SIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN-K---VLGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHhhhcccc-----cceeccccccccceeEEeccCCceeeeccccC-c---eeeee
Confidence 447889999999999987621 11111111111 222221 12233344555 9999999999863 1 11111
Q ss_pred ccccCCCC-CceEEEEEccCCCcEEEEE--eCCCcEEEEecCC
Q 023672 215 KGNKEGQA-GIMSAIAFSPTHTGMLAIG--SYSQTSAIYREDN 254 (279)
Q Consensus 215 ~~~~~~~~-~~v~~~~~sp~~~~~l~~~--~~dg~i~~wd~~~ 254 (279)
..|. .++..+..+. .+.+++.+ |.|..++.|++..
T Consensus 141 ----g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 ----GQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ----ccccCCCcceeEEec-CCceEEeeccccchhhhhcchhh
Confidence 3343 3444444444 55566666 6677777777653
No 406
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.67 E-value=0.94 Score=38.29 Aligned_cols=126 Identities=11% Similarity=0.194 Sum_probs=70.7
Q ss_pred CCCCceEEEEEccC----CCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccc
Q 023672 58 IPNNFLKGIKWSPD----GSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSA 133 (279)
Q Consensus 58 ~h~~~v~~~~~~~~----~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 133 (279)
|.-..|.++.|.|- ...|+.......|.||.+....... .+....-...-+++. ...|....
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~-----------~K~l~sQtcEi~e~~---pvLpQGCV 119 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTER-----------NKLLMSQTCEIREPF---PVLPQGCV 119 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcccc-----------ccceeeeeeeccCCc---ccCCCccc
Confidence 34456999999984 2245555557789999986322111 011111111111111 11233344
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccC
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHR 203 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~ 203 (279)
|+|....|+.-.....-.++++... +....++..+ .|.|.+|.+||+.|+++ ..-.-++||-..
T Consensus 120 WHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G------~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 120 WHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSG------LIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCc------eEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 5666777776655544345666543 3334444333 79999999999888754 555667888654
No 407
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.63 E-value=0.55 Score=37.47 Aligned_cols=102 Identities=15% Similarity=0.067 Sum_probs=56.5
Q ss_pred ceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccC---CCcEEEEEeCC-------
Q 023672 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPT---HTGMLAIGSYS------- 244 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~---~~~~l~~~~~d------- 244 (279)
..+.|+|.|+|+++++-..|.|++++... .....+..+.............++++|+ ++.+.++.+..
T Consensus 3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~~g--~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAERSGRIWVVDKDG--SLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEEETTTEEEEEETTT--EECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEEeCCceEEEEeCCC--cCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 45789999999888877899999999322 2112222222223344567899999992 35555555432
Q ss_pred -CcEEEEecCCC-------eE-EEEEee---cCCCEEEEEEccCCC
Q 023672 245 -QTSAIYREDNM-------EL-LYVLHG---QEGGVTHVSKLSSAY 278 (279)
Q Consensus 245 -g~i~~wd~~~~-------~~-~~~~~~---~~~~v~~~~~spdg~ 278 (279)
..|.-|....+ +. +..+.. ....-..|+|.|||+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~ 126 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK 126 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc
Confidence 23433443332 11 222232 234567799999984
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.56 E-value=0.85 Score=37.23 Aligned_cols=130 Identities=17% Similarity=0.138 Sum_probs=61.6
Q ss_pred CCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC--CCCCEEEE--ecCCeEEEEEc-cCCCCceeeeeecccc---
Q 023672 146 RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN--PTGTKIFA--GYNKSVRVFDV-HRPGRDFEKYSTLKGN--- 217 (279)
Q Consensus 146 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~--~~d~~i~~~d~-~~~~~~~~~~~~~~~~--- 217 (279)
...++.+||+.+.+.++++....... .+.-+.|. |+..+-++ ...++|..|-- ..+.-..+....+...
T Consensus 220 yG~~l~vWD~~~r~~~Q~idLg~~g~---~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 220 YGHSLHVWDWSTRKLLQTIDLGEEGQ---MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp S--EEEEEETTTTEEEEEEES-TTEE---EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred ccCeEEEEECCCCcEeeEEecCCCCC---ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 35689999999999999998765311 34455664 55555443 35555555544 3322222222222111
Q ss_pred ----------cCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC---eEEEEEee----------------cCCCE
Q 023672 218 ----------KEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---ELLYVLHG----------------QEGGV 268 (279)
Q Consensus 218 ----------~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~~----------------~~~~v 268 (279)
+..-..-|+.|.+|.|+..+.++.=.+|.|+.||+... +++.++.- -.+..
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgP 376 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGP 376 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S--
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCC
Confidence 01113457899999955555556667999999999753 33333321 11234
Q ss_pred EEEEEccCCC
Q 023672 269 THVSKLSSAY 278 (279)
Q Consensus 269 ~~~~~spdg~ 278 (279)
.-|..|-||+
T Consensus 377 qMvqlS~DGk 386 (461)
T PF05694_consen 377 QMVQLSLDGK 386 (461)
T ss_dssp --EEE-TTSS
T ss_pred CeEEEccCCe
Confidence 6688888886
No 409
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.52 E-value=1.4 Score=37.75 Aligned_cols=31 Identities=10% Similarity=0.123 Sum_probs=25.6
Q ss_pred CCcEEEEEeCCCcEEEEecCCCeEEEEEeec
Q 023672 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
.+.+++.++.+|.++.+|.++|+.+..++..
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 3457777888999999999999999877654
No 410
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=95.50 E-value=0.19 Score=37.27 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=48.1
Q ss_pred CCCcEEEEecCCCcEEEEECCCCeeeEEE-eccCcc--------ccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672 136 PTSCVFASTTRDHPIHLWDATTGLLRCTY-RAYDAV--------DEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (279)
Q Consensus 136 ~~~~~l~s~~~d~~i~i~d~~~~~~~~~~-~~~~~~--------~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~ 203 (279)
.++.++++.+.+|.+++||+.+++.+..- ....-. .....|..+.++.+|.-+++-.+|..+.|+..-
T Consensus 20 ~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L 96 (219)
T PF07569_consen 20 CNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDL 96 (219)
T ss_pred eCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEecccc
Confidence 36778999999999999999988764332 100000 122367888899888877765778889998875
No 411
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.42 E-value=0.41 Score=39.15 Aligned_cols=106 Identities=11% Similarity=0.033 Sum_probs=60.2
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCce-EEEEeeCcccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESV-YDFCWFPHMSA 133 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~ 133 (279)
.+......+.++..+|++++.|+...-|.|.++|+.++....-.+..... ....+.......- ......+ .
T Consensus 302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdA-----qc~wi~~~~~~~~~~~~~~~~---~ 373 (415)
T PF14655_consen 302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDA-----QCGWIEVPEEGDRDRSNSNSP---K 373 (415)
T ss_pred eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccc-----eEEEEEeeccccccccccccc---C
Confidence 44455667899999999998888888899999999987553322222110 0000000000000 0000000 0
Q ss_pred cCC--CCcEEEEecCCCcEEEEECCCCeeeEEEeccC
Q 023672 134 SDP--TSCVFASTTRDHPIHLWDATTGLLRCTYRAYD 168 (279)
Q Consensus 134 ~~~--~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~ 168 (279)
..+ .--+++-+-.-|.|.||.+++|..+..+....
T Consensus 374 ~~~~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v~k 410 (415)
T PF14655_consen 374 SSSRFALFLVIYAPRRGILEVWSMRQGPRVAAFNVGK 410 (415)
T ss_pred CCCcceEEEEEEeccCCeEEEEecCCCCEEEEEEeCC
Confidence 000 01145556778999999999998887776543
No 412
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.42 E-value=0.89 Score=34.92 Aligned_cols=121 Identities=10% Similarity=0.105 Sum_probs=79.8
Q ss_pred ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEE
Q 023672 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVF 199 (279)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~ 199 (279)
.+.++.| +|+.+.|++......-.++=-..|+.+.+++...-. ....|.+..++++.++- .++.+.++
T Consensus 87 nvS~LTy-------np~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~----DpE~Ieyig~n~fvi~dER~~~l~~~ 155 (316)
T COG3204 87 NVSSLTY-------NPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFS----DPETIEYIGGNQFVIVDERDRALYLF 155 (316)
T ss_pred cccceee-------CCCcceEEEecCCCceEEEEecCCceEEEecccccC----ChhHeEEecCCEEEEEehhcceEEEE
Confidence 3666666 778888888777776667766779999888765532 34578888888888887 89999999
Q ss_pred EccCCCCceeeee-ecccccCCC-CCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 200 DVHRPGRDFEKYS-TLKGNKEGQ-AGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 200 d~~~~~~~~~~~~-~~~~~~~~~-~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
.+........... .+.-....+ ....-.++|+| ....|..+-+-.-+.||.+.
T Consensus 156 ~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 156 TVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred EEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEe
Confidence 8876432211111 111111122 45678899999 56666666666666666554
No 413
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=95.31 E-value=2.1 Score=38.57 Aligned_cols=180 Identities=13% Similarity=0.098 Sum_probs=103.4
Q ss_pred eeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccC-CCeEEEeeC----------CCeEEEEeCCCCcccccccccc
Q 023672 34 WPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPD-GSSFLTSSE----------DKTLRIFSLPENGISYDVNACS 102 (279)
Q Consensus 34 ~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~----------dg~i~iwd~~~~~~~~~~~~~~ 102 (279)
.-++++|..+-+.++.++...- --.-.|.++.|..| +.++++|.. .|.|.||.+.+......
T Consensus 750 s~l~vlD~nTf~vl~~hef~~~--E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~----- 822 (1096)
T KOG1897|consen 750 SFLRVLDQNTFEVLSSHEFERN--ETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL----- 822 (1096)
T ss_pred EEEEEecCCceeEEeecccccc--ceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee-----
Confidence 3567778777776654322110 01124666678877 677877753 46677776664211110
Q ss_pred ccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC
Q 023672 103 LAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN 182 (279)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (279)
.....-.+.++++.- -+|+++| +....|++|+..+.+.++.-..+.. ++..+...
T Consensus 823 ----------v~e~~v~Gav~aL~~--------fngkllA--~In~~vrLye~t~~~eLr~e~~~~~-----~~~aL~l~ 877 (1096)
T KOG1897|consen 823 ----------VAETVVKGAVYALVE--------FNGKLLA--GINQSVRLYEWTTERELRIECNISN-----PIIALDLQ 877 (1096)
T ss_pred ----------eeeeeeccceeehhh--------hCCeEEE--ecCcEEEEEEccccceehhhhcccC-----CeEEEEEE
Confidence 011111234444431 1565555 4567899999988755544433333 77888888
Q ss_pred CCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 183 PTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 183 ~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
-.+..+++| .-+++.+...+.....+..... .-+..+.+++.+-. + ..++.+..+|.+.+-..
T Consensus 878 v~gdeI~VgDlm~Sitll~y~~~eg~f~evAr-----D~~p~Wmtaveil~-~-d~ylgae~~gNlf~v~~ 941 (1096)
T KOG1897|consen 878 VKGDEIAVGDLMRSITLLQYKGDEGNFEEVAR-----DYNPNWMTAVEILD-D-DTYLGAENSGNLFTVRK 941 (1096)
T ss_pred ecCcEEEEeeccceEEEEEEeccCCceEEeeh-----hhCccceeeEEEec-C-ceEEeecccccEEEEEe
Confidence 899999988 6777777766653323333322 34566778888765 3 34455556776666543
No 414
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=95.14 E-value=1.2 Score=34.87 Aligned_cols=111 Identities=18% Similarity=0.209 Sum_probs=58.3
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeec
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTL 214 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~ 214 (279)
+++|.++++++....+.-||.-...-...-+.... .|..|.|.|++.+.+.+..|.|+.=+..... ......
T Consensus 153 ~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~-----riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~---~~w~~~ 224 (302)
T PF14870_consen 153 SSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSR-----RIQSMGFSPDGNLWMLARGGQIQFSDDPDDG---ETWSEP 224 (302)
T ss_dssp -TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS------EEEEEE-TTS-EEEEETTTEEEEEE-TTEE---EEE---
T ss_pred CCCCcEEEEECcccEEEEecCCCccceEEccCccc-----eehhceecCCCCEEEEeCCcEEEEccCCCCc---cccccc
Confidence 78999999888777777888643322222222222 8899999999988887799999988732211 221111
Q ss_pred ccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCe
Q 023672 215 KGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNME 256 (279)
Q Consensus 215 ~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~ 256 (279)
..........+..++|.+ ++.+.++|+ .|.+ +.....|+
T Consensus 225 ~~~~~~~~~~~ld~a~~~-~~~~wa~gg-~G~l-~~S~DgGk 263 (302)
T PF14870_consen 225 IIPIKTNGYGILDLAYRP-PNEIWAVGG-SGTL-LVSTDGGK 263 (302)
T ss_dssp B-TTSS--S-EEEEEESS-SS-EEEEES-TT-E-EEESSTTS
T ss_pred cCCcccCceeeEEEEecC-CCCEEEEeC-CccE-EEeCCCCc
Confidence 111112234588999999 777777665 4443 33444443
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.12 E-value=2.2 Score=37.84 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=50.6
Q ss_pred ceeeEEECCCCCEEE-EecCCeEEEEEccC-CC---------Cceeeeeecc-c--ccCCCCCceEEEEEccC--CCcEE
Q 023672 175 AAFSVAFNPTGTKIF-AGYNKSVRVFDVHR-PG---------RDFEKYSTLK-G--NKEGQAGIMSAIAFSPT--HTGML 238 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~-~~---------~~~~~~~~~~-~--~~~~~~~~v~~~~~sp~--~~~~l 238 (279)
.|..+.++|+|.+++ +|. ..|.|..+-. .+ ....+..... . ....+...|..+.|+|. ++..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~-~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGP-RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcC-CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 688999999999998 555 4444444432 11 1112211111 0 11234567899999993 24678
Q ss_pred EEEeCCCcEEEEecCCC
Q 023672 239 AIGSYSQTSAIYREDNM 255 (279)
Q Consensus 239 ~~~~~dg~i~~wd~~~~ 255 (279)
+.-..|+++++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 88888999999999754
No 416
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=95.10 E-value=1.5 Score=35.85 Aligned_cols=114 Identities=13% Similarity=0.177 Sum_probs=62.8
Q ss_pred CceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeE--EEeccCccccccceeeEEECCCCCEEEEecCCeEE
Q 023672 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRC--TYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVR 197 (279)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~ 197 (279)
..+..+.+ .+++..++++ .+|.+. +....++.-. .+...........+..+.|.+++..+++|.+|.+.
T Consensus 281 ~~l~~v~~-------~~dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~ 351 (398)
T PLN00033 281 RRIQNMGW-------RADGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILL 351 (398)
T ss_pred cceeeeeE-------cCCCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEE
Confidence 45555655 5677766655 455553 3344443110 12111110011257889999999998899888776
Q ss_pred EEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672 198 VFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIY 250 (279)
Q Consensus 198 ~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~w 250 (279)
.-. .+++.++..... ..-....+.+.|.+ ++..+++| .+|.|.-|
T Consensus 352 ~s~--D~G~tW~~~~~~----~~~~~~ly~v~f~~-~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 352 RST--DGGKSWKRDKGA----DNIAANLYSVKFFD-DKKGFVLG-NDGVLLRY 396 (398)
T ss_pred EeC--CCCcceeEcccc----CCCCcceeEEEEcC-CCceEEEe-CCcEEEEe
Confidence 653 234444332211 22245678999977 66666655 57776544
No 417
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=95.04 E-value=0.2 Score=25.75 Aligned_cols=40 Identities=15% Similarity=0.047 Sum_probs=28.3
Q ss_pred CCcEEEEEeCCCcEEEEecCCCeEEEEEeecCCCEEEEEEc
Q 023672 234 HTGMLAIGSYSQTSAIYREDNMELLYVLHGQEGGVTHVSKL 274 (279)
Q Consensus 234 ~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~s 274 (279)
+..++++...++.|.++|..+++.+..+... .....++|+
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~~ 42 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAVS 42 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEeC
Confidence 3344555556889999999999988888763 444666664
No 418
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.00 E-value=0.49 Score=38.74 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=52.1
Q ss_pred cceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEc-------------cCCCc-EE
Q 023672 174 TAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFS-------------PTHTG-ML 238 (279)
Q Consensus 174 ~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s-------------p~~~~-~l 238 (279)
..+.+++.+|++++.++. .-|.|.++|+.++ . .+...+.-..+.-+.+....-. +.... ++
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~-~---vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARG-I---VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCC-h---hhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 367899999999888876 6699999999873 2 2222211111111111111110 00011 33
Q ss_pred EEEeCCCcEEEEecCCCeEEEEEeec
Q 023672 239 AIGSYSQTSAIYREDNMELLYVLHGQ 264 (279)
Q Consensus 239 ~~~~~dg~i~~wd~~~~~~~~~~~~~ 264 (279)
+-+-.-|.|.||++++|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 34566889999999999988877653
No 419
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.97 E-value=1.2 Score=33.90 Aligned_cols=104 Identities=12% Similarity=0.123 Sum_probs=59.3
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeee--ee
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKY--ST 213 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~--~~ 213 (279)
++..|+.+.....|.++|..+.+....+...........++-+.|- +|...+-- ....|...|..++ .....+ ..
T Consensus 138 dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG-~V~~~iDls~ 215 (264)
T PF05096_consen 138 DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETG-KVVGWIDLSG 215 (264)
T ss_dssp CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT--BEEEEEE-HH
T ss_pred CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCC-eEEEEEEhhH
Confidence 6778888877889999999988877777665443334456666665 45555533 6677777787773 222111 01
Q ss_pred cccc------cCCCCCceEEEEEccCCCcEEEEEe
Q 023672 214 LKGN------KEGQAGIMSAIAFSPTHTGMLAIGS 242 (279)
Q Consensus 214 ~~~~------~~~~~~~v~~~~~sp~~~~~l~~~~ 242 (279)
+... .....+-.+.+++.|..+.+++||-
T Consensus 216 L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 216 LRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp HHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred hhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 1100 0111456889999996777788774
No 420
>PRK13684 Ycf48-like protein; Provisional
Probab=94.85 E-value=1.6 Score=34.88 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=79.3
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
.+.+.++.+.|++.+++++. .|.+..- .+.+.. .+.. ........++.+.+ .+++.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~gg~--------------tW~~-~~~~~~~~l~~i~~-------~~~g~ 227 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPGQT--------------AWTP-HQRNSSRRLQSMGF-------QPDGN 227 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCCCC--------------eEEE-eeCCCcccceeeeE-------cCCCC
Confidence 45678888888876665554 4544321 111100 0000 11122234555544 56676
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccC
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKE 219 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 219 (279)
.++.+ ..|.+.+=..+.+..-.....+.. .....+..+.+.|++..++++.+|.+.. .... ++..+..... .
T Consensus 228 ~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~-~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~-G~tW~~~~~~----~ 299 (334)
T PRK13684 228 LWMLA-RGGQIRFNDPDDLESWSKPIIPEI-TNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDG-GKTWEKDPVG----E 299 (334)
T ss_pred EEEEe-cCCEEEEccCCCCCccccccCCcc-ccccceeeEEEcCCCCEEEEcCCCeEEE-eCCC-CCCCeECCcC----C
Confidence 66654 456554322344432222221100 0111567899999888888888886653 3332 3333332111 1
Q ss_pred CCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 220 GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 220 ~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
.-....+.+.|.. ++..+++ +..|.|.-|+
T Consensus 300 ~~~~~~~~~~~~~-~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 300 EVPSNFYKIVFLD-PEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred CCCcceEEEEEeC-CCceEEE-CCCceEEEec
Confidence 1223577777776 5555554 5578877665
No 421
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=94.82 E-value=0.97 Score=36.08 Aligned_cols=113 Identities=17% Similarity=0.180 Sum_probs=54.4
Q ss_pred CcccccCCCCcEEEEecCCCcEEEEECCCCee---eEEEeccCccccccceeeEEECCC---CCEEE-Ee-cC-------
Q 023672 129 PHMSASDPTSCVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNPT---GTKIF-AG-YN------- 193 (279)
Q Consensus 129 ~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~-~~-~d------- 193 (279)
|..+++.|+++++++ ...|.|++++ ..+.. +..+. .-..........++++|+ ..+|+ +. ..
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~-~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLP-EVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-T-TTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccc-cccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 334566888877665 5599999999 44443 22221 111122236789999995 23444 22 21
Q ss_pred -CeEEEEEccCCCCceeeeeecc---cccCCCCCceEEEEEccCCCcEEEEEeCCC
Q 023672 194 -KSVRVFDVHRPGRDFEKYSTLK---GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ 245 (279)
Q Consensus 194 -~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg 245 (279)
..|.-|.+............+. ............+.|.| ++.++++.+..+
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgp-DG~LYvs~G~~~ 135 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGP-DGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-T-TSEEEEEEB-TT
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCC-CCcEEEEeCCCC
Confidence 2344455543211222111111 11011223456799999 777777665433
No 422
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.66 E-value=2 Score=34.94 Aligned_cols=58 Identities=12% Similarity=0.143 Sum_probs=33.1
Q ss_pred ceeeEEECCCCCEEEE-ecC-------------------CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCC
Q 023672 175 AAFSVAFNPTGTKIFA-GYN-------------------KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTH 234 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~-~~d-------------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 234 (279)
....+.|.|+|.+.++ |.. +.|.-+|... ...+.+. .++ .....++|+| .
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg--~~~e~~a------~G~-rnp~Gl~~d~-~ 194 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDG--GKLRVVA------HGF-QNPYGHSVDS-W 194 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCC--CeEEEEe------cCc-CCCccceECC-C
Confidence 4678999999987663 311 2333344432 2222211 232 3356899999 8
Q ss_pred CcEEEEEe
Q 023672 235 TGMLAIGS 242 (279)
Q Consensus 235 ~~~l~~~~ 242 (279)
+.++++-.
T Consensus 195 G~l~~tdn 202 (367)
T TIGR02604 195 GDVFFCDN 202 (367)
T ss_pred CCEEEEcc
Confidence 88877644
No 423
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.65 E-value=1.9 Score=34.78 Aligned_cols=132 Identities=11% Similarity=0.025 Sum_probs=66.5
Q ss_pred ccccCCCCcEEEEecC-CC--cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-EecCCeEEEEEccCCCC
Q 023672 131 MSASDPTSCVFASTTR-DH--PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGYNKSVRVFDVHRPGR 206 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~d~~i~~~d~~~~~~ 206 (279)
.-+|.++|+.|+.++. || .+.+.|+.+++..+....... ......++|+++.++ .-.+..++-.|+.+..
T Consensus 40 ~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~-----~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e- 113 (386)
T PF14583_consen 40 QNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGD-----NTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE- 113 (386)
T ss_dssp S--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B------TTT-EE-TTSSEEEEEETTTEEEEEETTT---
T ss_pred CCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCC-----CccceEEecCCCeEEEEECCCeEEEEECCcCc-
Confidence 3466888876665544 44 678889999987665554332 233567788888876 5567789999998832
Q ss_pred ceeeeeecccccCCCCCceEEEEEcc-CCCcEEEEEeC----------------------CCcEEEEecCCCeEEEEEee
Q 023672 207 DFEKYSTLKGNKEGQAGIMSAIAFSP-THTGMLAIGSY----------------------SQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~v~~~~~sp-~~~~~l~~~~~----------------------dg~i~~wd~~~~~~~~~~~~ 263 (279)
...+..+. ...+-...|.. .++..++..-. ...|.--|+.+|+....+.
T Consensus 114 -~~~vy~~p------~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~- 185 (386)
T PF14583_consen 114 -ERVVYEVP------DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE- 185 (386)
T ss_dssp -EEEEEE--------TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-
T ss_pred -EEEEEECC------cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-
Confidence 12222332 23343345542 14444433211 1246666888887655544
Q ss_pred cCCCEEEEEEccC
Q 023672 264 QEGGVTHVSKLSS 276 (279)
Q Consensus 264 ~~~~v~~~~~spd 276 (279)
-..++..+.|||.
T Consensus 186 ~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 186 DTDWLGHVQFSPT 198 (386)
T ss_dssp ESS-EEEEEEETT
T ss_pred cCccccCcccCCC
Confidence 3456777777774
No 424
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.62 E-value=2.1 Score=35.71 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=34.7
Q ss_pred eCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCc--cccccceeeEEECCCC
Q 023672 128 FPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDA--VDEITAAFSVAFNPTG 185 (279)
Q Consensus 128 ~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~ 185 (279)
.|..++|.|++++|++--..|.|++++..++........... .........|+++|+-
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 345566788998777665569999998665432221111100 0012367899999884
No 425
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.57 E-value=2.8 Score=36.31 Aligned_cols=106 Identities=13% Similarity=0.239 Sum_probs=56.9
Q ss_pred CCcEEEEecCCC------cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCC-----eEEEEEccCC
Q 023672 137 TSCVFASTTRDH------PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNK-----SVRVFDVHRP 204 (279)
Q Consensus 137 ~~~~l~s~~~d~------~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~-----~i~~~d~~~~ 204 (279)
+|.+.++|+.++ ++..||..+++....-+...... -..++.- ++.+.++| .|+ +|..||..+.
T Consensus 427 ~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~----~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 427 GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS----GFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc----cceEEEE-CCEEEEECCccCCCccceEEEEcCCCC
Confidence 667777777554 57788988876543333222211 1123332 34444444 554 3778888873
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc-----EEEEecCCCe
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-----SAIYREDNME 256 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-----i~~wd~~~~~ 256 (279)
. +..+... ......+..+.+ ++.+.+.|+.||. |..||..+.+
T Consensus 502 ~--W~~v~~m----~~~rs~~g~~~~---~~~ly~vGG~~~~~~l~~ve~ydp~~d~ 549 (571)
T KOG4441|consen 502 Q--WTMVAPM----TSPRSAVGVVVL---GGKLYAVGGFDGNNNLNTVECYDPETDT 549 (571)
T ss_pred c--eeEcccC----ccccccccEEEE---CCEEEEEecccCccccceeEEcCCCCCc
Confidence 1 2222111 222222322333 6788888888874 7788876554
No 426
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.56 E-value=0.068 Score=46.89 Aligned_cols=109 Identities=14% Similarity=0.194 Sum_probs=63.9
Q ss_pred CcEEEEECC--CCeeeEEEeccCccccccceeeEEECC---CCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCC
Q 023672 148 HPIHLWDAT--TGLLRCTYRAYDAVDEITAAFSVAFNP---TGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (279)
Q Consensus 148 ~~i~i~d~~--~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 221 (279)
|.+.+||+. .|+....+..+........+.-+.|.| +..++.++ .++.+++..+.+... ..+ .+|
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-----~l~----rsH 223 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-----SLF----RSH 223 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-----HHH----Hhc
Confidence 568889886 354443333222111111344555555 44555567 788999888875211 111 235
Q ss_pred CCceEEE-----------EEccCCCcEEEEEeCCCcEEEEec-----CCCeEEEEEeecCC
Q 023672 222 AGIMSAI-----------AFSPTHTGMLAIGSYSQTSAIYRE-----DNMELLYVLHGQEG 266 (279)
Q Consensus 222 ~~~v~~~-----------~~sp~~~~~l~~~~~dg~i~~wd~-----~~~~~~~~~~~~~~ 266 (279)
...+..+ ..|| ||..++.++.||.+++|.+ +.-.|+...+.|++
T Consensus 224 s~~~~d~a~~~~g~~~l~~lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~ 283 (1283)
T KOG1916|consen 224 SQRVTDMAFFAEGVLKLASLSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDK 283 (1283)
T ss_pred CCCcccHHHHhhchhhheeeCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCC
Confidence 4433332 4789 9999999999999887765 33345666666763
No 427
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.52 E-value=0.95 Score=37.70 Aligned_cols=29 Identities=10% Similarity=-0.110 Sum_probs=19.9
Q ss_pred EEeeCcccccCCCCcEEEEecCCCcEEEE
Q 023672 125 FCWFPHMSASDPTSCVFASTTRDHPIHLW 153 (279)
Q Consensus 125 ~~~~~~~~~~~~~~~~l~s~~~d~~i~i~ 153 (279)
+.|.-..+..++.|..++.++.+|.+.++
T Consensus 102 V~feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 102 VLFEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred ceEEEEEEEecCCCceEEEecCCeeEEEE
Confidence 34444445668889999988888866544
No 428
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=94.47 E-value=0.34 Score=36.02 Aligned_cols=72 Identities=10% Similarity=0.087 Sum_probs=46.5
Q ss_pred ECCCCCEEEE-ecCCeEEEEEccCCCCceeeeeecccccC-------CCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 181 FNPTGTKIFA-GYNKSVRVFDVHRPGRDFEKYSTLKGNKE-------GQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 181 ~~~~~~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-------~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
+..++.++++ ..+|.+++||+.+........ .+..... .....|..+.++. +|.-+++-+ +|..+.||.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-Si~pll~~~~~~~~~~~~~i~~~~lt~-~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-SIAPLLNSSPVSDKSSSPNITSCSLTS-NGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-cHHHHhcccccccCCCCCcEEEEEEcC-CCCEEEEEe-CCCEEEecc
Confidence 4456667764 599999999999853222221 1111111 3456788999998 777777665 578899986
Q ss_pred CCC
Q 023672 253 DNM 255 (279)
Q Consensus 253 ~~~ 255 (279)
.-+
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 543
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.42 E-value=0.67 Score=38.42 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=49.7
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~ 203 (279)
.+.++|.++..|-|++||--..+....++.-+. .|..+..+.+|+++++.....+.+.|++-
T Consensus 572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~-----aIk~idvta~Gk~ilaTCk~yllL~d~~i 633 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGD-----AIKHIDVTANGKHILATCKNYLLLTDVPI 633 (776)
T ss_pred cCceEEEecCCCceeeehhhcchhhhcCccccc-----ceeeeEeecCCcEEEEeecceEEEEeccc
Confidence 455899999999999999765555555555554 78899999999999988888888888863
No 430
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=94.38 E-value=1.2 Score=31.70 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=27.8
Q ss_pred ceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCC
Q 023672 121 SVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATT 157 (279)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~ 157 (279)
.+..++|+|..+.- ..+.+|++.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~-~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGP-NGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCC-CCceEEEEEcCCCeEEEEecCC
Confidence 68889999976532 2356788889999999998763
No 431
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=1.9 Score=40.00 Aligned_cols=79 Identities=14% Similarity=0.136 Sum_probs=53.4
Q ss_pred ceeeEEECCCCCEEEEecCCeEEEEEccCC-CCcee--------------eeeecccccCCCCCceEEEEEccCCCcEEE
Q 023672 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRP-GRDFE--------------KYSTLKGNKEGQAGIMSAIAFSPTHTGMLA 239 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~-~~~~~--------------~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~ 239 (279)
.|.++....+|+.+++|.||.++=.-.... +.-.+ ....+......+..+|..+.... ...+|.
T Consensus 180 ~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-SR~IlY 258 (1311)
T KOG1900|consen 180 SVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-SRNILY 258 (1311)
T ss_pred eEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-ccceee
Confidence 788999889999999998885442222211 00000 01111111135677999999988 888999
Q ss_pred EEeCCCcEEEEecCC
Q 023672 240 IGSYSQTSAIYREDN 254 (279)
Q Consensus 240 ~~~~dg~i~~wd~~~ 254 (279)
+-++.|+|.+||+..
T Consensus 259 ~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 259 VLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeccCceEEEEEccC
Confidence 999999999999975
No 432
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=94.22 E-value=2.8 Score=34.94 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=24.2
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCCC
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN 92 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~ 92 (279)
..-+.|+|.||+++|++--..|.|++++..++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~ 61 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETG 61 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCC
Confidence 34688999999987766654699999976543
No 433
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.05 E-value=0.4 Score=24.56 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=24.0
Q ss_pred CCCcEEEE-ecCCCcEEEEECCCCeeeEEEeccC
Q 023672 136 PTSCVFAS-TTRDHPIHLWDATTGLLRCTYRAYD 168 (279)
Q Consensus 136 ~~~~~l~s-~~~d~~i~i~d~~~~~~~~~~~~~~ 168 (279)
|+++.|++ ...++.|.++|..+++.+..+....
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 35555554 4457899999999998888877643
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=3 Score=34.36 Aligned_cols=124 Identities=8% Similarity=0.129 Sum_probs=71.0
Q ss_pred eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEec
Q 023672 113 SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY 192 (279)
Q Consensus 113 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 192 (279)
.+.....++|.++.| ++|.+.+|.--.+.+|.+++....+....+. +........|....|+.+ .-++.-.
T Consensus 60 Sfdm~d~G~I~SIkF-------SlDnkilAVQR~~~~v~f~nf~~d~~~l~~~-~~ck~k~~~IlGF~W~~s-~e~A~i~ 130 (657)
T KOG2377|consen 60 SFDMDDKGEIKSIKF-------SLDNKILAVQRTSKTVDFCNFIPDNSQLEYT-QECKTKNANILGFCWTSS-TEIAFIT 130 (657)
T ss_pred eeeecCCCceeEEEe-------ccCcceEEEEecCceEEEEecCCCchhhHHH-HHhccCcceeEEEEEecC-eeEEEEe
Confidence 344555569999987 7889999999999999999974333222211 111112225788888876 4444335
Q ss_pred CCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcE-EEEEe-CCCcEEEEecC
Q 023672 193 NKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGM-LAIGS-YSQTSAIYRED 253 (279)
Q Consensus 193 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~-l~~~~-~dg~i~~wd~~ 253 (279)
+..+-+|-.....+..+.. +.|...|.=..|.+ +... |++.+ ..+++.=+.++
T Consensus 131 ~~G~e~y~v~pekrslRlV-------ks~~~nvnWy~yc~-et~v~LL~t~~~~n~lnpf~~~ 185 (657)
T KOG2377|consen 131 DQGIEFYQVLPEKRSLRLV-------KSHNLNVNWYMYCP-ETAVILLSTTVLENVLNPFHFR 185 (657)
T ss_pred cCCeEEEEEchhhhhhhhh-------hhcccCccEEEEcc-ccceEeeeccccccccccEEEe
Confidence 5556777665432222222 34555666677777 4443 33333 33433334333
No 435
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=93.87 E-value=1.3 Score=29.75 Aligned_cols=111 Identities=13% Similarity=0.169 Sum_probs=66.9
Q ss_pred CCCCcEEEEecCCCcEEEEECCCC--------eeeEEEeccCccccccceeeEE---ECC--CCCEEEEecCCeEEEEEc
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTG--------LLRCTYRAYDAVDEITAAFSVA---FNP--TGTKIFAGYNKSVRVFDV 201 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~--------~~~~~~~~~~~~~~~~~v~~~~---~~~--~~~~l~~~~d~~i~~~d~ 201 (279)
......|+.++..++|.|++.... ..+..+.... .|++++ |.| ....|+.|....+..||+
T Consensus 7 DG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~------~italaaG~l~~~~~~D~LliGt~t~llaYDV 80 (136)
T PF14781_consen 7 DGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ------EITALAAGRLKPDDGRDCLLIGTQTSLLAYDV 80 (136)
T ss_pred CCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC------ceEEEEEEecCCCCCcCEEEEeccceEEEEEc
Confidence 334446788888899999987633 2344555444 555654 433 346777899999999999
Q ss_pred cCCCCceeeeeecccccCCCCCceEEEEEcc---CCCcEEEEEeCCCcEEEEecCCCeEEEEE
Q 023672 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP---THTGMLAIGSYSQTSAIYREDNMELLYVL 261 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp---~~~~~l~~~~~dg~i~~wd~~~~~~~~~~ 261 (279)
..+...+. +.-.+.|.++.+-. ....+++.| .+..|.-||..-.+...+.
T Consensus 81 ~~N~d~Fy---------ke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFY---------KEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhh---------hhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcEEEEEe
Confidence 87422111 12234577776632 123344444 4677888887655554443
No 436
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=93.74 E-value=0.8 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=25.1
Q ss_pred ceEEEEEccC-----CCcEEEEEeCCCcEEEEecC
Q 023672 224 IMSAIAFSPT-----HTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 224 ~v~~~~~sp~-----~~~~l~~~~~dg~i~~wd~~ 253 (279)
.+.+++|||. .+.+|++-+.++.|.||...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~ 121 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP 121 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence 7889999992 34578899999999999865
No 437
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.73 E-value=2.6 Score=32.87 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=36.9
Q ss_pred ceEEEEEccCCCcEEEEEeCCCcEEEEecCCC---eEEEEEe-ec--CCCEEEEEEcc--CCC
Q 023672 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM---ELLYVLH-GQ--EGGVTHVSKLS--SAY 278 (279)
Q Consensus 224 ~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~---~~~~~~~-~~--~~~v~~~~~sp--dg~ 278 (279)
....+++++ +|.++++--..+.|..|+..+. +....+. .. -.++.++.+.+ +|.
T Consensus 187 ~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~ 248 (287)
T PF03022_consen 187 QSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY 248 (287)
T ss_dssp SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred CCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce
Confidence 456788999 8999999999999999998762 1122222 12 24788898888 653
No 438
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=93.73 E-value=0.39 Score=24.27 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=19.5
Q ss_pred CCCceEEEEEccCCCeEEE-eeCC--CeEEEE
Q 023672 59 PNNFLKGIKWSPDGSSFLT-SSED--KTLRIF 87 (279)
Q Consensus 59 h~~~v~~~~~~~~~~~l~t-~~~d--g~i~iw 87 (279)
..+.-....|+|||+.|+- +..+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 3456778999999998874 4445 666665
No 439
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=93.28 E-value=0.96 Score=38.96 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=29.2
Q ss_pred ceEEEEEcc---CCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672 224 IMSAIAFSP---THTGMLAIGSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 224 ~v~~~~~sp---~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
.+.+++.++ ++..+|++.+.|+.+|+||+.+++++.+...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 344455544 2567899999999999999999999776643
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=93.20 E-value=3.7 Score=32.91 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=51.1
Q ss_pred ceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCC
Q 023672 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~ 254 (279)
.++++.+.++++.++++..|.+++=.... +.......... ......+.++.+.| ++.++++| .+|.+. .....
T Consensus 216 ~l~~i~~~~~g~~~~vg~~G~~~~~s~d~-G~sW~~~~~~~---~~~~~~l~~v~~~~-~~~~~~~G-~~G~v~-~S~d~ 288 (334)
T PRK13684 216 RLQSMGFQPDGNLWMLARGGQIRFNDPDD-LESWSKPIIPE---ITNGYGYLDLAYRT-PGEIWAGG-GNGTLL-VSKDG 288 (334)
T ss_pred cceeeeEcCCCCEEEEecCCEEEEccCCC-CCccccccCCc---cccccceeeEEEcC-CCCEEEEc-CCCeEE-EeCCC
Confidence 78899999999988888778765322222 33333211100 01123578889998 77666554 567554 33333
Q ss_pred CeEEEEEe---ecCCCEEEEEEccCC
Q 023672 255 MELLYVLH---GQEGGVTHVSKLSSA 277 (279)
Q Consensus 255 ~~~~~~~~---~~~~~v~~~~~spdg 277 (279)
++.-.... .-......+.|..++
T Consensus 289 G~tW~~~~~~~~~~~~~~~~~~~~~~ 314 (334)
T PRK13684 289 GKTWEKDPVGEEVPSNFYKIVFLDPE 314 (334)
T ss_pred CCCCeECCcCCCCCcceEEEEEeCCC
Confidence 33222221 112245556655443
No 441
>PHA03098 kelch-like protein; Provisional
Probab=93.17 E-value=5.1 Score=34.48 Aligned_cols=106 Identities=8% Similarity=0.059 Sum_probs=50.8
Q ss_pred CCcEEEEecCC------CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEE-ecC--------CeEEEEEc
Q 023672 137 TSCVFASTTRD------HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYN--------KSVRVFDV 201 (279)
Q Consensus 137 ~~~~l~s~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d--------~~i~~~d~ 201 (279)
++.+.+.|+.+ ..+..||+.+.+-...-...... .-.++.. -++.+++. |.+ ..+.+||.
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~ 463 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISH----YGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNP 463 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccc----cCceEEE-ECCEEEEECCccCCCCCcccceEEEecC
Confidence 45566666632 35788998876543322111110 1112222 23444443 332 23888888
Q ss_pred cCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCe
Q 023672 202 HRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME 256 (279)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~ 256 (279)
.+.. +....... ........+. . ++.+++.|+.+ +.+.+||..+.+
T Consensus 464 ~~~~--W~~~~~~~----~~r~~~~~~~--~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 464 VTNK--WTELSSLN----FPRINASLCI--F-NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCc--eeeCCCCC----cccccceEEE--E-CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 7631 22221111 1111112222 2 56777777754 468889887654
No 442
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.12 E-value=1.6 Score=35.82 Aligned_cols=95 Identities=9% Similarity=0.054 Sum_probs=57.3
Q ss_pred ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecC
Q 023672 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRED 253 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~ 253 (279)
+|.++.|++|.+.+++- .+..|.+++............+. +.....|...+|+. + .-++.-+..| +-+|-..
T Consensus 68 ~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~c----k~k~~~IlGF~W~~-s-~e~A~i~~~G-~e~y~v~ 140 (657)
T KOG2377|consen 68 EIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQEC----KTKNANILGFCWTS-S-TEIAFITDQG-IEFYQVL 140 (657)
T ss_pred ceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHh----ccCcceeEEEEEec-C-eeEEEEecCC-eEEEEEc
Confidence 89999999999999987 89999999985421111111111 22344588999987 5 3444444344 5555543
Q ss_pred C-CeEEEEEeecCCCEEEEEEccC
Q 023672 254 N-MELLYVLHGQEGGVTHVSKLSS 276 (279)
Q Consensus 254 ~-~~~~~~~~~~~~~v~~~~~spd 276 (279)
. .+.+...+.|.-.|.-..|.|+
T Consensus 141 pekrslRlVks~~~nvnWy~yc~e 164 (657)
T KOG2377|consen 141 PEKRSLRLVKSHNLNVNWYMYCPE 164 (657)
T ss_pred hhhhhhhhhhhcccCccEEEEccc
Confidence 2 2233444455555655556554
No 443
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.66 E-value=3.9 Score=31.77 Aligned_cols=117 Identities=12% Similarity=0.230 Sum_probs=66.4
Q ss_pred cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-------cCCeEEEEEccCCCCceeeeeeccccc-CC
Q 023672 149 PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-------YNKSVRVFDVHRPGRDFEKYSTLKGNK-EG 220 (279)
Q Consensus 149 ~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~ 220 (279)
.|.+||..+.+-...-..-. ..|..+.|..+.+++++| ....+..||+.+. .+..+.... ..
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~-----G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~-----~w~~~~~~~s~~ 86 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGIS-----GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ-----TWSSLGGGSSNS 86 (281)
T ss_pred EEEEEECCCCEeecCCCCce-----EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC-----eeeecCCccccc
Confidence 58899988776544332222 279999998766666654 2346888999862 222332211 12
Q ss_pred CCCceEEEEEccCCC-cEEEEEe-CCC--cEEEEecCCCeEEEE-EeecCCCEEEEEEcc
Q 023672 221 QAGIMSAIAFSPTHT-GMLAIGS-YSQ--TSAIYREDNMELLYV-LHGQEGGVTHVSKLS 275 (279)
Q Consensus 221 ~~~~v~~~~~sp~~~-~~l~~~~-~dg--~i~~wd~~~~~~~~~-~~~~~~~v~~~~~sp 275 (279)
-.++|..+.+...+. .+.+.|. .+| .|..||=.++..+.. .-.....|.++.+-|
T Consensus 87 ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 87 IPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred CCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 346788888754344 4554544 333 377777666555443 222234556655443
No 444
>PHA02713 hypothetical protein; Provisional
Probab=91.91 E-value=7.8 Score=33.60 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=17.0
Q ss_pred CCcEEEEecCCC-----cEEEEECCCCeee
Q 023672 137 TSCVFASTTRDH-----PIHLWDATTGLLR 161 (279)
Q Consensus 137 ~~~~l~s~~~d~-----~i~i~d~~~~~~~ 161 (279)
++.+.+.|+.++ .+..||..+.+-.
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 566777777654 4788998876543
No 445
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.83 E-value=4.7 Score=30.92 Aligned_cols=99 Identities=15% Similarity=0.213 Sum_probs=65.9
Q ss_pred ccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeee
Q 023672 133 ASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 133 ~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~ 212 (279)
+-.|||..-+++...+.|--.|..+|+....--.... ....|..-|||...++-....|.-+|-++. .++
T Consensus 68 apapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga-----~Phgiv~gpdg~~Witd~~~aI~R~dpkt~--evt--- 137 (353)
T COG4257 68 APAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGA-----SPHGIVVGPDGSAWITDTGLAIGRLDPKTL--EVT--- 137 (353)
T ss_pred ccCCCCceEEecCccccceecCCCCCceEEEecCCCC-----CCceEEECCCCCeeEecCcceeEEecCccc--ceE---
Confidence 4478888888888888898899999986554443333 556788899987766542225666666552 111
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEe
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGS 242 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~ 242 (279)
++.-..+..........|.+ .|.+.+++.
T Consensus 138 ~f~lp~~~a~~nlet~vfD~-~G~lWFt~q 166 (353)
T COG4257 138 RFPLPLEHADANLETAVFDP-WGNLWFTGQ 166 (353)
T ss_pred EeecccccCCCcccceeeCC-CccEEEeec
Confidence 22222233345677889999 888888875
No 446
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.53 E-value=6.9 Score=32.21 Aligned_cols=96 Identities=9% Similarity=-0.008 Sum_probs=54.0
Q ss_pred ceeeEEECCCCCEEEEecCCeEEEEEccCCCCcee--eeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 175 AAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFE--KYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
.+..+.|.+++..++++.+|.+..= ... +.... .+..... ......+.++.|.+ ++..+++| .+|.+....
T Consensus 282 ~l~~v~~~~dg~l~l~g~~G~l~~S-~d~-G~~~~~~~f~~~~~--~~~~~~l~~v~~~~-d~~~~a~G-~~G~v~~s~- 354 (398)
T PLN00033 282 RIQNMGWRADGGLWLLTRGGGLYVS-KGT-GLTEEDFDFEEADI--KSRGFGILDVGYRS-KKEAWAAG-GSGILLRST- 354 (398)
T ss_pred ceeeeeEcCCCCEEEEeCCceEEEe-cCC-CCcccccceeeccc--CCCCcceEEEEEcC-CCcEEEEE-CCCcEEEeC-
Confidence 6789999999999988877776543 222 22111 1111110 11223588899988 77666555 567665543
Q ss_pred CCCeEEEEE---eecCCCEEEEEEccCC
Q 023672 253 DNMELLYVL---HGQEGGVTHVSKLSSA 277 (279)
Q Consensus 253 ~~~~~~~~~---~~~~~~v~~~~~spdg 277 (279)
..|+.=... ..-....+.+.|.+++
T Consensus 355 D~G~tW~~~~~~~~~~~~ly~v~f~~~~ 382 (398)
T PLN00033 355 DGGKSWKRDKGADNIAANLYSVKFFDDK 382 (398)
T ss_pred CCCcceeEccccCCCCcceeEEEEcCCC
Confidence 333322222 2223467788877654
No 447
>PRK10115 protease 2; Provisional
Probab=91.45 E-value=5.9 Score=35.32 Aligned_cols=71 Identities=7% Similarity=0.029 Sum_probs=42.8
Q ss_pred ceeeEEECCCCCEEEEe--cC----CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCC----
Q 023672 175 AAFSVAFNPTGTKIFAG--YN----KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS---- 244 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~--~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d---- 244 (279)
.+..+.++|++++|+.+ .+ ..|++.|+.++ ..+ ...+ .+ .-..++|++++..++++...+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg-~~l--~~~i----~~---~~~~~~w~~D~~~~~y~~~~~~~~~ 197 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG-NWY--PELL----DN---VEPSFVWANDSWTFYYVRKHPVTLL 197 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC-CCC--Cccc----cC---cceEEEEeeCCCEEEEEEecCCCCC
Confidence 45678899999998843 22 35888898763 111 0011 11 114689999444455554322
Q ss_pred -CcEEEEecCCC
Q 023672 245 -QTSAIYREDNM 255 (279)
Q Consensus 245 -g~i~~wd~~~~ 255 (279)
..|+.+++.++
T Consensus 198 ~~~v~~h~lgt~ 209 (686)
T PRK10115 198 PYQVWRHTIGTP 209 (686)
T ss_pred CCEEEEEECCCC
Confidence 35888888887
No 448
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=91.25 E-value=5.2 Score=30.29 Aligned_cols=127 Identities=13% Similarity=0.174 Sum_probs=65.8
Q ss_pred ccCCCCcEEEEecC-C--CcEEEEECCCC--eeeEEEeccCccccccceeeEEECCCCCEEEEe--cCCeEEEEEccCCC
Q 023672 133 ASDPTSCVFASTTR-D--HPIHLWDATTG--LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG--YNKSVRVFDVHRPG 205 (279)
Q Consensus 133 ~~~~~~~~l~s~~~-d--~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~d~~i~~~d~~~~~ 205 (279)
++-+||++|.+|+. + ..+++++..+. .+... .........+.--....-|||+.|+.| ......+|.-....
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~-e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~ 151 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWT-ESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG 151 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCCCCCCce-ECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence 45789999998865 2 35788876541 11110 000001111133355667899988854 43455566553211
Q ss_pred Cceeeeeeccccc-CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672 206 RDFEKYSTLKGNK-EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 206 ~~~~~~~~~~~~~-~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
........+.... ......-..+...| +|++++.+..+. .|||..+.+.+..+..
T Consensus 152 ~~~~~~~~l~~~~~~~~~nlYP~~~llP-dG~lFi~an~~s--~i~d~~~n~v~~~lP~ 207 (243)
T PF07250_consen 152 PGPVTLPFLSQTSDTLPNNLYPFVHLLP-DGNLFIFANRGS--IIYDYKTNTVVRTLPD 207 (243)
T ss_pred CCceeeecchhhhccCccccCceEEEcC-CCCEEEEEcCCc--EEEeCCCCeEEeeCCC
Confidence 1111111111000 11122233567789 899998887654 4678888877666654
No 449
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.13 E-value=9.2 Score=32.91 Aligned_cols=164 Identities=15% Similarity=0.094 Sum_probs=85.9
Q ss_pred CeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEec------C
Q 023672 73 SSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTT------R 146 (279)
Q Consensus 73 ~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~------~ 146 (279)
..++.++.|+.+.-+|..+++.......... .....+ .-.|. +. ++ .++.+. .
T Consensus 121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~-------------~~~~~~---tssP~---v~-~g-~Vivg~~~~~~~~ 179 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDY-------------KAGYTI---TAAPL---VV-KG-KVITGISGGEFGV 179 (527)
T ss_pred CEEEEEcCCCEEEEEECCCCCEEeecccccc-------------cccccc---cCCcE---EE-CC-EEEEeecccccCC
Confidence 4577788899999999988876443221100 000000 00010 00 23 333332 3
Q ss_pred CCcEEEEECCCCeeeEEEeccCccc--------------------------ccccee-eEEECCCCCEEEEe--c----C
Q 023672 147 DHPIHLWDATTGLLRCTYRAYDAVD--------------------------EITAAF-SVAFNPTGTKIFAG--Y----N 193 (279)
Q Consensus 147 d~~i~i~d~~~~~~~~~~~~~~~~~--------------------------~~~~v~-~~~~~~~~~~l~~~--~----d 193 (279)
+|.|.-+|.++|+.+..+....... ....++ .+++.|...+++.+ . +
T Consensus 180 ~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~ 259 (527)
T TIGR03075 180 RGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWN 259 (527)
T ss_pred CcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCC
Confidence 6889999999998887765432110 000111 34677766666633 2 2
Q ss_pred C-----------eEEEEEccCCCCceeeeeecccccCCCC--CceEEEEEccCCCc---EEEEEeCCCcEEEEecCCCeE
Q 023672 194 K-----------SVRVFDVHRPGRDFEKYSTLKGNKEGQA--GIMSAIAFSPTHTG---MLAIGSYSQTSAIYREDNMEL 257 (279)
Q Consensus 194 ~-----------~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~sp~~~~---~l~~~~~dg~i~~wd~~~~~~ 257 (279)
+ .|.-.|+++++ ..-.++......-... ....-+.... ++. .++.+..+|.+++.|.++|++
T Consensus 260 ~~~r~gdnl~~~s~vAld~~TG~-~~W~~Q~~~~D~wD~d~~~~p~l~d~~~-~G~~~~~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 260 SHLRPGDNLYTSSIVARDPDTGK-IKWHYQTTPHDEWDYDGVNEMILFDLKK-DGKPRKLLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred CCCCCCCCccceeEEEEccccCC-EEEeeeCCCCCCccccCCCCcEEEEecc-CCcEEEEEEEeCCCceEEEEECCCCce
Confidence 2 56667777742 2222222211000001 1122233334 444 788999999999999999998
Q ss_pred EE
Q 023672 258 LY 259 (279)
Q Consensus 258 ~~ 259 (279)
+.
T Consensus 338 i~ 339 (527)
T TIGR03075 338 LS 339 (527)
T ss_pred ec
Confidence 63
No 450
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=91.12 E-value=9.6 Score=33.14 Aligned_cols=106 Identities=12% Similarity=0.181 Sum_probs=55.7
Q ss_pred CCcEEEEecCCC-----cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cC------CeEEEEEccCC
Q 023672 137 TSCVFASTTRDH-----PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YN------KSVRVFDVHRP 204 (279)
Q Consensus 137 ~~~~l~s~~~d~-----~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d------~~i~~~d~~~~ 204 (279)
+|.+.|+|+.|| ++-.||..+.+....-....... .+-...+ +|++.++| .+ .++..||..++
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~---~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~ 454 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRS---GHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETN 454 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCcccccCCCCccee---eeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCC
Confidence 677888888886 47788887765332221111100 1111222 45555543 33 45788888873
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCc-----EEEEecCCCe
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQT-----SAIYREDNME 256 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~-----i~~wd~~~~~ 256 (279)
. +...........++ .... - ++.+++.|+.|+. |..||..+.+
T Consensus 455 ~--W~~~~~M~~~R~~~----g~a~--~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~ 502 (571)
T KOG4441|consen 455 T--WTLIAPMNTRRSGF----GVAV--L-NGKIYVVGGFDGTSALSSVERYDPETNQ 502 (571)
T ss_pred c--eeecCCcccccccc----eEEE--E-CCEEEEECCccCCCccceEEEEcCCCCc
Confidence 2 22222222111222 1222 2 6788889988773 7778887654
No 451
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=90.93 E-value=3.5 Score=27.75 Aligned_cols=120 Identities=13% Similarity=0.048 Sum_probs=69.6
Q ss_pred EEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEe
Q 023672 65 GIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (279)
Q Consensus 65 ~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 144 (279)
.-.|......|++++.-|+|.|++.......... ....+ ....-+..|++++-.+-.. +.....|+.|
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~--------~~~~i--~~LNin~~italaaG~l~~--~~~~D~LliG 70 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR--------QDSDI--SFLNINQEITALAAGRLKP--DDGRDCLLIG 70 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc--------ccCce--eEEECCCceEEEEEEecCC--CCCcCEEEEe
Confidence 3456666668888999999999987654221110 11111 1222334666665433211 2334467777
Q ss_pred cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECC----CCCEEEEecCCeEEEEEccC
Q 023672 145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNP----TGTKIFAGYNKSVRVFDVHR 203 (279)
Q Consensus 145 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~d~~i~~~d~~~ 203 (279)
+. ..|..||+.....+.....+. .|.++.+-. ...++++|.+-.|.-||..-
T Consensus 71 t~-t~llaYDV~~N~d~Fyke~~D------Gvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 71 TQ-TSLLAYDVENNSDLFYKEVPD------GVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred cc-ceEEEEEcccCchhhhhhCcc------ceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 64 468899998776554433333 566666632 24566677878888888764
No 452
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=90.86 E-value=2.7 Score=34.55 Aligned_cols=169 Identities=12% Similarity=0.104 Sum_probs=86.8
Q ss_pred ccCCCCCceEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCccccc
Q 023672 55 TSSIPNNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSAS 134 (279)
Q Consensus 55 ~~~~h~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 134 (279)
.+......|..+-..|||+.|+.-+. ..+.|+++.+....... .. ....++.+..+. .....
T Consensus 215 ~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rk-l~-------------~dspg~~~~~Vt---e~l~l 276 (733)
T COG4590 215 LLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRK-LV-------------DDSPGDSRHQVT---EQLYL 276 (733)
T ss_pred hcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhh-hh-------------hcCCCchHHHHH---HHHHH
Confidence 35555677888999999998876655 67889998865442210 00 000110000000 00011
Q ss_pred CCCCcEEEEecCCCcEEEE-ECCCCee-----eEEEeccCccccccceeeEEECCCCCEEEE-ecCCeEEEEEccCCCCc
Q 023672 135 DPTSCVFASTTRDHPIHLW-DATTGLL-----RCTYRAYDAVDEITAAFSVAFNPTGTKIFA-GYNKSVRVFDVHRPGRD 207 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~-d~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~d~~i~~~d~~~~~~~ 207 (279)
-..|..+..++.||.|.-| |++.+.. ++.++.... ++..+.-..+.+-+++ ...|.+.++..... +.
T Consensus 277 L~Gg~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa-----~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~-~~ 350 (733)
T COG4590 277 LSGGFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPA-----EVQFLLPETNRKGFYSLYRNGTLQSFYSTSE-KL 350 (733)
T ss_pred HhCceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcc-----cceeeccccccceEEEEcCCCceeeeecccC-cc
Confidence 2245567888889988755 6654321 111111111 2222211112233333 26677776655431 11
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeE
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMEL 257 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~ 257 (279)
- -+ ...-..+.-+++|| ++.+|++-. .|.|+++.+.+..+
T Consensus 351 -l---L~----~~~~~~~~~~~~Sp-~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 351 -L---LF----ERAYQAPQLVAMSP-NQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred -e---eh----hhhhcCcceeeeCc-ccchheeec-CCceEEEEecCCCC
Confidence 0 01 11122466789999 888887653 56799998876543
No 453
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=90.51 E-value=6.5 Score=34.94 Aligned_cols=92 Identities=15% Similarity=0.220 Sum_probs=50.4
Q ss_pred eEEECCCCCEEEE-ecCC-----eEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 178 SVAFNPTGTKIFA-GYNK-----SVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 178 ~~~~~~~~~~l~~-~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
.++|-|.|..+++ +.|| .|.++..+. ..-..... ..+....+..++|+- ....++.+ ..+.|++|-
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNG--LrHGef~l----r~~~dEk~~~~~wn~-~s~vlav~-~~n~~~lwt 322 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNG--LRHGEFDL----RVGCDEKAFLENWNL-LSTVLAVA-EGNLLKLWT 322 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCC--cccCCccc----cCCchhhhhhhhhhH-HHHHHHHh-hcceEEEEE
Confidence 4899999999884 3333 344444332 11000000 013344567788887 66666554 456799998
Q ss_pred cCCCeEEEEEeecCCCEEEEEEccCC
Q 023672 252 EDNMELLYVLHGQEGGVTHVSKLSSA 277 (279)
Q Consensus 252 ~~~~~~~~~~~~~~~~v~~~~~spdg 277 (279)
..+-.---...-.-..+.-+.|+|.-
T Consensus 323 tkNyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 323 TKNYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ccceEEEEEEeecCCCcceeeecccc
Confidence 76654332222233345667777753
No 454
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.41 E-value=13 Score=33.55 Aligned_cols=123 Identities=13% Similarity=0.139 Sum_probs=66.4
Q ss_pred CcEEEEecCCCcEEEEECCCCeeeEEEeccCcccc---ccceeeEEECC----------------CCCEEE-EecCCeEE
Q 023672 138 SCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDE---ITAAFSVAFNP----------------TGTKIF-AGYNKSVR 197 (279)
Q Consensus 138 ~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~----------------~~~~l~-~~~d~~i~ 197 (279)
+..++.++.++.|.-.|..+|+.+..+........ ...+..+.+.. .+..++ ...|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 44677788889999999999999888765432111 00122233321 223555 44899999
Q ss_pred EEEccCCCCceeeeee-----cccccCCCCCceEEEEEcc--CCCcEEEEEeC----------CCcEEEEecCCCeEEEE
Q 023672 198 VFDVHRPGRDFEKYST-----LKGNKEGQAGIMSAIAFSP--THTGMLAIGSY----------SQTSAIYREDNMELLYV 260 (279)
Q Consensus 198 ~~d~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~sp--~~~~~l~~~~~----------dg~i~~wd~~~~~~~~~ 260 (279)
-.|.+++ +....+.. +...+......-..+.-.| .++ .++.|+. +|.|+-+|.++|+++-.
T Consensus 274 ALDA~TG-k~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g-~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 274 ALDADTG-KLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGT-TVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEECCCC-CEEEEecCCCceeeecccCcCCCcccccccCCEEECC-EEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 9999885 22211100 1000000000000111111 133 4445532 68899999999998876
Q ss_pred Ee
Q 023672 261 LH 262 (279)
Q Consensus 261 ~~ 262 (279)
+.
T Consensus 352 ~~ 353 (764)
T TIGR03074 352 WD 353 (764)
T ss_pred Ee
Confidence 65
No 455
>PHA02790 Kelch-like protein; Provisional
Probab=90.41 E-value=10 Score=32.21 Aligned_cols=104 Identities=8% Similarity=0.073 Sum_probs=50.3
Q ss_pred CCcEEEEecCCC---cEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCceeeeee
Q 023672 137 TSCVFASTTRDH---PIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRDFEKYST 213 (279)
Q Consensus 137 ~~~~l~s~~~d~---~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~~~~~~~ 213 (279)
++++.+.|+.++ .+..||.++.+-...-....... .. +++ .-++++.+.| |.+.+||.+++ .+.....
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~---~~-~~~-~~~~~IYv~G--G~~e~ydp~~~--~W~~~~~ 432 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY---KS-CAL-VFGRRLFLVG--RNAEFYCESSN--TWTLIDD 432 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc---cc-eEE-EECCEEEEEC--CceEEecCCCC--cEeEcCC
Confidence 566667766543 46788887765433211111100 11 121 2234454555 34678888763 2222222
Q ss_pred cccccCCCCCceEEEEEccCCCcEEEEEeCC-----CcEEEEecCCCe
Q 023672 214 LKGNKEGQAGIMSAIAFSPTHTGMLAIGSYS-----QTSAIYREDNME 256 (279)
Q Consensus 214 ~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~d-----g~i~~wd~~~~~ 256 (279)
+ .........+.+ ++.+.+.|+.+ ..+..||..+.+
T Consensus 433 m----~~~r~~~~~~v~---~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 433 P----IYPRDNPELIIV---DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred C----CCCccccEEEEE---CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 2 111112222222 66788888754 346677766544
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.39 E-value=7.9 Score=30.91 Aligned_cols=101 Identities=19% Similarity=0.291 Sum_probs=59.1
Q ss_pred ceeeEEECCCCCEEEEe-cC------CeEEEEEccCCCCceeeeeeccc--------ccCCCCCceEEEEEccCCCcEEE
Q 023672 175 AAFSVAFNPTGTKIFAG-YN------KSVRVFDVHRPGRDFEKYSTLKG--------NKEGQAGIMSAIAFSPTHTGMLA 239 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d------~~i~~~d~~~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~sp~~~~~l~ 239 (279)
...+|++.+++.++++. .+ ..|+.++.. +.....+..... .........-+++++| ++..|+
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~-dG~~l~ 162 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP-DGRTLF 162 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECC-CCCEEE
Confidence 34578887888888877 67 788888866 333222211110 1123355788999999 777555
Q ss_pred EEeC-----CC--c-------EEE--EecCC-CeE----EEEEee-----cCCCEEEEEEccCCC
Q 023672 240 IGSY-----SQ--T-------SAI--YREDN-MEL----LYVLHG-----QEGGVTHVSKLSSAY 278 (279)
Q Consensus 240 ~~~~-----dg--~-------i~~--wd~~~-~~~----~~~~~~-----~~~~v~~~~~spdg~ 278 (279)
++.+ |+ . ++| ||..+ ++. .+.+.. ....|..+.+-+|++
T Consensus 163 ~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 163 AAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred EEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 5543 22 1 344 55544 322 233332 345788999998886
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.36 E-value=0.05 Score=44.31 Aligned_cols=136 Identities=13% Similarity=0.268 Sum_probs=82.5
Q ss_pred EEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcE-EE
Q 023672 64 KGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCV-FA 142 (279)
Q Consensus 64 ~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-l~ 142 (279)
....|-|.+.-++.++.+..+..||-..... ......+...+++| +-++.. ++
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~agq~~-------------------le~n~tg~aldm~w-------Dkegdvlav 91 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAGQVI-------------------LELNPTGKALDMAW-------DKEGDVLAV 91 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhccee-------------------cccCCchhHhhhhh-------ccccchhhh
Confidence 3456777666688888888899998764322 11111223334444 334443 44
Q ss_pred EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCC
Q 023672 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQ 221 (279)
Q Consensus 143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 221 (279)
.+-..+.+.+||+.+.... .+..... + .-.-+.|++.+..++.+ ..+.+.+++..+.. ..... ..|
T Consensus 92 lAek~~piylwd~n~eytq-qLE~gg~--~--s~sll~wsKg~~el~ig~~~gn~viynhgtsR----~iiv~----Gkh 158 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYTQ-QLESGGT--S--SKSLLAWSKGTPELVIGNNAGNIVIYNHGTSR----RIIVM----GKH 158 (615)
T ss_pred hhhcCCCeeechhhhhhHH-HHhccCc--c--hHHHHhhccCCccccccccccceEEEeccchh----hhhhh----ccc
Confidence 4566789999999764321 1211111 0 11227889988888888 88999999998731 11111 338
Q ss_pred CCceEEEEEccCCCcEEE
Q 023672 222 AGIMSAIAFSPTHTGMLA 239 (279)
Q Consensus 222 ~~~v~~~~~sp~~~~~l~ 239 (279)
...++++++.+ .+..+.
T Consensus 159 ~RRgtq~av~l-Ed~vil 175 (615)
T KOG2247|consen 159 QRRGTQIAVTL-EDYVIL 175 (615)
T ss_pred ccceeEEEecc-cceeee
Confidence 88899999999 554433
No 458
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.15 E-value=5.4 Score=33.59 Aligned_cols=92 Identities=13% Similarity=0.101 Sum_probs=51.7
Q ss_pred ceEEEEEccCCCeEEEeeCCCeEEEEeCCCCcc---ccc---cccccccCCCCcccceeeec-CCCceEEEEeeCccccc
Q 023672 62 FLKGIKWSPDGSSFLTSSEDKTLRIFSLPENGI---SYD---VNACSLAKDQDSYEASLVVT-EGESVYDFCWFPHMSAS 134 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~ 134 (279)
.|..+..++.|..++-++.+|.+.++=....+. ..+ .-.|....-. ..+... ..-.+...+|+|+++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~----~~~ftss~~ltl~Qa~WHP~S~-- 178 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVA----ERFFTSSTSLTLKQAAWHPSSI-- 178 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeeccc----ceeeccCCceeeeeccccCCcc--
Confidence 467788899999999888898765543221111 000 0111111000 001111 112466778888743
Q ss_pred CCCCcEEEEecCCCcEEEEECCCCeee
Q 023672 135 DPTSCVFASTTRDHPIHLWDATTGLLR 161 (279)
Q Consensus 135 ~~~~~~l~s~~~d~~i~i~d~~~~~~~ 161 (279)
....+..-+.|..|++||+.....+
T Consensus 179 --~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 179 --LDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred --CCceEEEEecCcEEEEEecCCcchh
Confidence 2346667777999999999866544
No 459
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.95 E-value=4.5 Score=34.96 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=26.1
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEecc
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAY 167 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~ 167 (279)
+..++++.+.|+++|+||+.+++++......
T Consensus 229 ~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 229 DDTFLFTLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp TTTEEEEEETTSEEEEEETTTTCEEEEEETT
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEeccc
Confidence 5568999999999999999999997766443
No 460
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=89.90 E-value=1.2 Score=27.66 Aligned_cols=43 Identities=12% Similarity=0.102 Sum_probs=29.3
Q ss_pred EecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe
Q 023672 143 STTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG 191 (279)
Q Consensus 143 s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 191 (279)
.+..+|.+.-||..+++....+..-. ..+.+++++++.+++.+
T Consensus 32 e~~~~GRll~ydp~t~~~~vl~~~L~------fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 32 EGRPTGRLLRYDPSTKETTVLLDGLY------FPNGVALSPDESFVLVA 74 (89)
T ss_dssp HT---EEEEEEETTTTEEEEEEEEES------SEEEEEE-TTSSEEEEE
T ss_pred cCCCCcCEEEEECCCCeEEEehhCCC------ccCeEEEcCCCCEEEEE
Confidence 34456778889999987655554433 56789999999988865
No 461
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.71 E-value=14 Score=32.71 Aligned_cols=39 Identities=18% Similarity=0.201 Sum_probs=31.7
Q ss_pred CceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 223 GIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 223 ~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
..+..+..|| +..+|+-=...|.|.+-+....+.+..+.
T Consensus 217 ~~~~ki~VS~-n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSP-NRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcC-CcceEEEEecCCcEEEEecchhhhhhccC
Confidence 4577899999 89999999999999998887776655554
No 462
>PRK10115 protease 2; Provisional
Probab=89.63 E-value=15 Score=32.91 Aligned_cols=111 Identities=14% Similarity=0.202 Sum_probs=61.5
Q ss_pred ceEEEEEccCCCeEEEeeC-----CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCC
Q 023672 62 FLKGIKWSPDGSSFLTSSE-----DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDP 136 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 136 (279)
.+..+.++||+++|+.+.. .-.|++.|+.++..... .... .. ..++| .+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-----------------~i~~-~~-~~~~w-------~~ 181 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-----------------LLDN-VE-PSFVW-------AN 181 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-----------------cccC-cc-eEEEE-------ee
Confidence 4677889999998875432 33578888876532100 0000 01 33556 55
Q ss_pred CCcEEEEecCC------CcEEEEECCCC--eeeEEEeccCcccccccee-eEEECCCCCEEE--E-e-cCCeEEEEEccC
Q 023672 137 TSCVFASTTRD------HPIHLWDATTG--LLRCTYRAYDAVDEITAAF-SVAFNPTGTKIF--A-G-YNKSVRVFDVHR 203 (279)
Q Consensus 137 ~~~~l~s~~~d------~~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~--~-~-~d~~i~~~d~~~ 203 (279)
+++.|+....+ ..|..+++.++ +....+..... ... .+..+.++++++ + + .++.+.+++...
T Consensus 182 D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~-----~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~ 256 (686)
T PRK10115 182 DSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDD-----TFYVSLHKTTSKHYVVIHLASATTSEVLLLDAEL 256 (686)
T ss_pred CCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCC-----CEEEEEEEcCCCCEEEEEEECCccccEEEEECcC
Confidence 66655544322 36788888887 33334442221 122 334455777665 2 2 457899998643
No 463
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=89.09 E-value=12 Score=31.06 Aligned_cols=111 Identities=8% Similarity=0.117 Sum_probs=64.8
Q ss_pred CCcEEEEecCCCcEEEEECCCCe-----eeEEEeccCccccccceeeEEEC---C--CCCEEEEecCCeEEEEEccCCCC
Q 023672 137 TSCVFASTTRDHPIHLWDATTGL-----LRCTYRAYDAVDEITAAFSVAFN---P--TGTKIFAGYNKSVRVFDVHRPGR 206 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~-----~~~~~~~~~~~~~~~~v~~~~~~---~--~~~~l~~~~d~~i~~~d~~~~~~ 206 (279)
+...|++|+..|.++||+..... .+....... +|..+..- + +...|++-.-..+.+|.+.....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~------PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g 109 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKD------PILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDG 109 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCC------cEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCC
Confidence 45689999999999999986543 122222221 55555543 2 22455555888899998853211
Q ss_pred ------ceeeeeecccccCCCCCceEEEEEccCC----CcEEEEEeCCCcEEEEecCCCe
Q 023672 207 ------DFEKYSTLKGNKEGQAGIMSAIAFSPTH----TGMLAIGSYSQTSAIYREDNME 256 (279)
Q Consensus 207 ------~~~~~~~~~~~~~~~~~~v~~~~~sp~~----~~~l~~~~~dg~i~~wd~~~~~ 256 (279)
...........+ ......+++-|.+ ..+++.=+.||.+.+|+-+.-.
T Consensus 110 ~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~ 166 (418)
T PF14727_consen 110 TVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA 166 (418)
T ss_pred CcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE
Confidence 122211222111 2234445554422 4678888999999999976544
No 464
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=88.39 E-value=13 Score=30.77 Aligned_cols=153 Identities=14% Similarity=0.174 Sum_probs=80.2
Q ss_pred CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcE
Q 023672 71 DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPI 150 (279)
Q Consensus 71 ~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i 150 (279)
+...+++||..|.++||+......... ...+...-+.+|..+....- .-..+...||. =.-..+
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-------------~lllE~~l~~PILqv~~G~F--~s~~~~~~LaV-LhP~kl 99 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-------------DLLLETQLKDPILQVECGKF--VSGSEDLQLAV-LHPRKL 99 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-------------cEEEEEecCCcEEEEEeccc--cCCCCcceEEE-ecCCEE
Confidence 345899999999999999865432111 11234445567777765321 00112234443 335567
Q ss_pred EEEECCC--Ce-------eeEEEeccCccccccceeeEEECCC----C-CEEEE-ecCCeEEEEEccCCCCceeeeeecc
Q 023672 151 HLWDATT--GL-------LRCTYRAYDAVDEITAAFSVAFNPT----G-TKIFA-GYNKSVRVFDVHRPGRDFEKYSTLK 215 (279)
Q Consensus 151 ~i~d~~~--~~-------~~~~~~~~~~~~~~~~v~~~~~~~~----~-~~l~~-~~d~~i~~~d~~~~~~~~~~~~~~~ 215 (279)
.+|.+.. |. .+..+..|.- ....+.+++-|- + .++.+ +.||.+.+|+-+. ..+..+.
T Consensus 100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~-----~~f~~~l 171 (418)
T PF14727_consen 100 SVYSVSLVDGTVEHGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQES-----FAFSRFL 171 (418)
T ss_pred EEEEEEecCCCcccCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCc-----EEEEEEc
Confidence 7777631 11 1111111111 012334444332 2 34443 5999999999876 1111111
Q ss_pred cccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEec
Q 023672 216 GNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYRE 252 (279)
Q Consensus 216 ~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~ 252 (279)
.+ ---...++|.+ ..+.+++++.+..+.-|..
T Consensus 172 ---p~-~llPgPl~Y~~-~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 172 ---PD-FLLPGPLCYCP-RTDSFVTASSSWTLECYKY 203 (418)
T ss_pred ---CC-CCCCcCeEEee-cCCEEEEecCceeEEEecH
Confidence 11 11233467888 7777888887777777754
No 465
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=88.27 E-value=1.5 Score=20.91 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=20.5
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEE
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTY 164 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~ 164 (279)
.++.++.++.+..+|.++|+.+..+
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999876653
No 466
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=87.93 E-value=21 Score=32.49 Aligned_cols=131 Identities=13% Similarity=0.126 Sum_probs=71.3
Q ss_pred CceEEEEEcc-CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCc
Q 023672 61 NFLKGIKWSP-DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSC 139 (279)
Q Consensus 61 ~~v~~~~~~~-~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (279)
.+...++|+| +.+.||.....|.-.||++....... ...........+.+ ......-..-..+.| .++..
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~-~~~~~~~~~~~gsi-~~d~~e~s~w~rI~W-------~~~~~ 216 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRK-SSNLRLSRNISGSI-IFDPEELSNWKRILW-------VSDSN 216 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEeccccccC-CcceeeccCCCccc-cCCCcccCcceeeEe-------cCCCC
Confidence 3567899999 56689999999999999993221110 00111000000000 001111123345556 45555
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCC-CEEEEecCCeEEEEEccCC
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTG-TKIFAGYNKSVRVFDVHRP 204 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~d~~i~~~d~~~~ 204 (279)
.|+.++. ..+.++|+++......+..... ...|..+.-+|.. .+++.-....|...|+...
T Consensus 217 ~lLv~~r-~~l~~~d~~~~~~~~~l~~~~~---~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~ 278 (765)
T PF10214_consen 217 RLLVCNR-SKLMLIDFESNWQTEYLVTAKT---WSWILDVKRSPDNPSHVFILTSKEIIWLDVKSS 278 (765)
T ss_pred EEEEEcC-CceEEEECCCCCccchhccCCC---hhheeeEEecCCccceEEEEecCeEEEEEccCC
Confidence 6776664 4588899987765332222211 1267777777762 3333334467888888764
No 467
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.75 E-value=19 Score=30.66 Aligned_cols=124 Identities=9% Similarity=0.101 Sum_probs=59.3
Q ss_pred cCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEec--------------CCeEEEE
Q 023672 134 SDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGY--------------NKSVRVF 199 (279)
Q Consensus 134 ~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------d~~i~~~ 199 (279)
..++|.+++... ..+..+|+. |+.+.......... ..=..+...|+|++|+.+. ...|..+
T Consensus 155 ~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~--~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivev 229 (477)
T PF05935_consen 155 QLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY--DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEV 229 (477)
T ss_dssp E-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE---B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE
T ss_pred EcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc--ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEE
Confidence 356787776655 778888875 66666655444210 0113577788888877322 1223333
Q ss_pred EccCCCCceeeeeeccccc---------------------CCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEE
Q 023672 200 DVHRPGRDFEKYSTLKGNK---------------------EGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELL 258 (279)
Q Consensus 200 d~~~~~~~~~~~~~~~~~~---------------------~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~ 258 (279)
| .+ ++....+... ..+ ...=-.+.++.+.+.++.+|+++-.-..|...|.++++..
T Consensus 230 d-~t-G~vv~~wd~~-d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 230 D-PT-GEVVWEWDFF-DHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp --TT-S-EEEEEEGG-GTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred C-CC-CCEEEEEehH-HhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 4 33 2221111100 000 0001248899999856667777665667888998888887
Q ss_pred EEEeecC
Q 023672 259 YVLHGQE 265 (279)
Q Consensus 259 ~~~~~~~ 265 (279)
..+-.+.
T Consensus 307 Wilg~~~ 313 (477)
T PF05935_consen 307 WILGPPG 313 (477)
T ss_dssp EEES-ST
T ss_pred EEeCCCC
Confidence 7776554
No 468
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=86.43 E-value=2.8 Score=20.98 Aligned_cols=29 Identities=21% Similarity=0.114 Sum_probs=24.3
Q ss_pred EEEEecCCCcEEEEECCCCeeeEEEeccC
Q 023672 140 VFASTTRDHPIHLWDATTGLLRCTYRAYD 168 (279)
Q Consensus 140 ~l~s~~~d~~i~i~d~~~~~~~~~~~~~~ 168 (279)
.++.++.+|.|.-.|.++|+.+..+....
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~~~ 30 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQTGP 30 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEESSS
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeCCC
Confidence 35566899999999999999998887654
No 469
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=86.39 E-value=5.9 Score=24.61 Aligned_cols=37 Identities=14% Similarity=-0.038 Sum_probs=25.0
Q ss_pred eCCCcEEEEecCCCeEEEEEeecCCCEEEEEEccCCCC
Q 023672 242 SYSQTSAIYREDNMELLYVLHGQEGGVTHVSKLSSAYT 279 (279)
Q Consensus 242 ~~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~spdg~~ 279 (279)
..+|.+.-||..+++..-.+.+-. -.++++++||+.+
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~ 70 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESF 70 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSE
T ss_pred CCCcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCE
Confidence 346789999999988655555433 5689999999863
No 470
>PHA03098 kelch-like protein; Provisional
Probab=86.35 E-value=21 Score=30.82 Aligned_cols=106 Identities=14% Similarity=0.101 Sum_probs=50.0
Q ss_pred CCcEEEEecCC-----CcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE-Eec-C-----CeEEEEEccCC
Q 023672 137 TSCVFASTTRD-----HPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF-AGY-N-----KSVRVFDVHRP 204 (279)
Q Consensus 137 ~~~~l~s~~~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~-d-----~~i~~~d~~~~ 204 (279)
++.+++.|+.+ ..+..||..+.+-...-..+... .-.+++. -++++++ .|. . ..+..||..+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r----~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~ 416 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPR----YNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTN 416 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCC----ccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCC
Confidence 45566777654 34777888776543221111110 1112222 2344444 342 1 45888998763
Q ss_pred CCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCC--------cEEEEecCCCe
Q 023672 205 GRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQ--------TSAIYREDNME 256 (279)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg--------~i~~wd~~~~~ 256 (279)
. +...........+ . ++ ... ++.+++.|+.++ .+.+||..+.+
T Consensus 417 ~--W~~~~~~p~~r~~----~-~~-~~~-~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 417 K--WSKGSPLPISHYG----G-CA-IYH-DGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred e--eeecCCCCccccC----c-eE-EEE-CCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 1 2222122111111 1 22 223 566777776432 37888887653
No 471
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.71 E-value=6.7 Score=34.67 Aligned_cols=79 Identities=9% Similarity=0.116 Sum_probs=54.1
Q ss_pred CceEEEEEc--cCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCC
Q 023672 61 NFLKGIKWS--PDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTS 138 (279)
Q Consensus 61 ~~v~~~~~~--~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 138 (279)
..++++++. ...++||+++....|.||-...... +....-...+...|.+++|.+.. .+++|
T Consensus 164 ~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~--------------r~~~~~s~~~~hNIP~VSFl~~~--~d~~G 227 (717)
T PF08728_consen 164 ASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDE--------------RFYHVPSHQHSHNIPNVSFLDDD--LDPNG 227 (717)
T ss_pred CceeEEEEEecCcceEEEEecCCceEEEEEEecccc--------------ccccccccccccCCCeeEeecCC--CCCcc
Confidence 478999998 7888899999888888886653210 00000112256678888887662 24455
Q ss_pred c-EEEEecCCCcEEEEEC
Q 023672 139 C-VFASTTRDHPIHLWDA 155 (279)
Q Consensus 139 ~-~l~s~~~d~~i~i~d~ 155 (279)
. .+++++..|.+.+|++
T Consensus 228 ~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 228 HVKVVATDISGEVWTFKI 245 (717)
T ss_pred ceEEEEEeccCcEEEEEE
Confidence 4 7888999999988887
No 472
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=85.32 E-value=15 Score=33.47 Aligned_cols=73 Identities=18% Similarity=0.236 Sum_probs=45.4
Q ss_pred CCcEEEEECCCCeeeEE-EeccCccccccceeeEEECCCCCEEE--EecC-----CeEEEEEccCCCCceeeeeeccccc
Q 023672 147 DHPIHLWDATTGLLRCT-YRAYDAVDEITAAFSVAFNPTGTKIF--AGYN-----KSVRVFDVHRPGRDFEKYSTLKGNK 218 (279)
Q Consensus 147 d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~ 218 (279)
.+.|.+-|......... +.... ++.+-.|||||+.|+ ++.. ..|++-|+++.+..+..+.
T Consensus 328 ~~~L~~~D~dG~n~~~ve~~~~~------~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~------ 395 (912)
T TIGR02171 328 TGNLAYIDYTKGASRAVEIEDTI------SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLP------ 395 (912)
T ss_pred CCeEEEEecCCCCceEEEecCCC------ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEee------
Confidence 35777888776555443 33322 788999999999988 3432 2588999988654433331
Q ss_pred CCCCCceEEEEEcc
Q 023672 219 EGQAGIMSAIAFSP 232 (279)
Q Consensus 219 ~~~~~~v~~~~~sp 232 (279)
-....|..-...+
T Consensus 396 -ve~aaiprwrv~e 408 (912)
T TIGR02171 396 -VENAAIPRWRVLE 408 (912)
T ss_pred -cccccccceEecC
Confidence 1234455555556
No 473
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=85.11 E-value=16 Score=28.54 Aligned_cols=158 Identities=14% Similarity=0.166 Sum_probs=83.1
Q ss_pred eeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCC-----CeE-EEeeCCCeEEEEeCCCCccccccccccccCCCC
Q 023672 35 PLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDG-----SSF-LTSSEDKTLRIFSLPENGISYDVNACSLAKDQD 108 (279)
Q Consensus 35 ~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~l-~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 108 (279)
.+..||+.+.+.++.+..........+.+..+.+.... .+. ++=+..+-|.|+|+.+++......... .....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~-~~~p~ 113 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSF-SPDPD 113 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGC-TTS-S
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCc-ceecc
Confidence 46789999999888766555444456789999987622 222 233445689999999876533322211 11110
Q ss_pred cccc---eeeecCCCceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCC-----e---------eeEEEeccCccc
Q 023672 109 SYEA---SLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTG-----L---------LRCTYRAYDAVD 171 (279)
Q Consensus 109 ~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~-----~---------~~~~~~~~~~~~ 171 (279)
.... .........+..++..| .+++++.|+.+...+ -++|-+.+. . .+..+-...
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~----~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~--- 185 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSP----ISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKG--- 185 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-T----TSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-----
T ss_pred ccceeccCceEecCCCccccccCC----CCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceeccccC---
Confidence 0000 00111112244444433 255777777665443 223333211 1 011111000
Q ss_pred cccceeeEEECCCCCEEEEe-cCCeEEEEEccC
Q 023672 172 EITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHR 203 (279)
Q Consensus 172 ~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~ 203 (279)
.....++++++|.++++- ..+.|..|+..+
T Consensus 186 --~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~ 216 (287)
T PF03022_consen 186 --SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDG 216 (287)
T ss_dssp ---SECEEEEETTTEEEEEECCCTEEEEEETTT
T ss_pred --CCCceEEECCCCcEEEecCCCCeEEEEeCCC
Confidence 144578889988888876 889999999986
No 474
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=82.70 E-value=38 Score=30.84 Aligned_cols=73 Identities=14% Similarity=-0.038 Sum_probs=43.6
Q ss_pred ceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceee---------eeeccc-cc-CCCCCceEEEEEccCCCcEEEEEe
Q 023672 175 AAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEK---------YSTLKG-NK-EGQAGIMSAIAFSPTHTGMLAIGS 242 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~---------~~~~~~-~~-~~~~~~v~~~~~sp~~~~~l~~~~ 242 (279)
.|.++....-+.+++.. .||+|.++|-.+-...... +..+.. .+ -..-..+..++||| ++..++.-.
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSP-t~c~~v~~~ 339 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSP-TMCSLVQID 339 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECc-ccceEEEEe
Confidence 56666666667777755 9999999998763111111 101100 00 00111344588999 888888888
Q ss_pred CCCcEE
Q 023672 243 YSQTSA 248 (279)
Q Consensus 243 ~dg~i~ 248 (279)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 888865
No 475
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=82.29 E-value=4.7 Score=20.16 Aligned_cols=27 Identities=7% Similarity=0.091 Sum_probs=22.2
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEEee
Q 023672 237 MLAIGSYSQTSAIYREDNMELLYVLHG 263 (279)
Q Consensus 237 ~l~~~~~dg~i~~wd~~~~~~~~~~~~ 263 (279)
.++.++.+|.|+-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355668999999999999999877763
No 476
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=82.27 E-value=9.4 Score=23.57 Aligned_cols=29 Identities=24% Similarity=0.482 Sum_probs=24.0
Q ss_pred ceeeEEECCCCCEEE-Ee-cCCeEEEEEccC
Q 023672 175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHR 203 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~ 203 (279)
....|.++|++++|+ ++ ..+.|++|..+.
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 557899999999998 44 889999998764
No 477
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=81.75 E-value=24 Score=27.92 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=0.0
Q ss_pred eEecCCCCcccceeeeeeccCCCCCceEEEEE--cc---CCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCccc
Q 023672 37 IRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKW--SP---DGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYE 111 (279)
Q Consensus 37 ~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~---~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 111 (279)
.+.|+.+++.+ +..+++ +| +|++.++=+..|.+.-+|.+++..
T Consensus 188 ~vidv~s~evl---------------~~GLsmPhSPRWhdgrLwvldsgtGev~~vD~~~G~~----------------- 235 (335)
T TIGR03032 188 CVIDIPSGEVV---------------ASGLSMPHSPRWYQGKLWLLNSGRGELGYVDPQAGKF----------------- 235 (335)
T ss_pred EEEEeCCCCEE---------------EcCccCCcCCcEeCCeEEEEECCCCEEEEEcCCCCcE-----------------
Q ss_pred ceeeecCCCceEEEEeeCcccccCCCCcEEEEe--------------------cCCCcEEEEECCCCeeeEEEeccCccc
Q 023672 112 ASLVVTEGESVYDFCWFPHMSASDPTSCVFAST--------------------TRDHPIHLWDATTGLLRCTYRAYDAVD 171 (279)
Q Consensus 112 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~--------------------~~d~~i~i~d~~~~~~~~~~~~~~~~~ 171 (279)
..|..+.-.|..++|. |.+++++ ....-|.+.|+++|..+..++......
T Consensus 236 --------e~Va~vpG~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l~~~~CGv~vidl~tG~vv~~l~feg~v~ 305 (335)
T TIGR03032 236 --------QPVAFLPGFTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERLDALGCGVAVIDLNSGDVVHWLRFEGVIE 305 (335)
T ss_pred --------EEEEECCCCCccccee--CCEEEEEeccccCCCCcCCCchhhhhhhhcccEEEEECCCCCEEEEEEeCCcee
Q ss_pred cccceeeEEECCC
Q 023672 172 EITAAFSVAFNPT 184 (279)
Q Consensus 172 ~~~~v~~~~~~~~ 184 (279)
.+++++.-|.
T Consensus 306 ---EifdV~vLPg 315 (335)
T TIGR03032 306 ---EIYDVAVLPG 315 (335)
T ss_pred ---EEEEEEEecC
No 478
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.74 E-value=19 Score=26.63 Aligned_cols=23 Identities=22% Similarity=0.494 Sum_probs=16.6
Q ss_pred CCCCceEEEEEccCCCcEEEEEe
Q 023672 220 GQAGIMSAIAFSPTHTGMLAIGS 242 (279)
Q Consensus 220 ~~~~~v~~~~~sp~~~~~l~~~~ 242 (279)
.+.+-.+.+++.|+.+.++++|-
T Consensus 226 ~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 226 SNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred cccccccceeecCcCCeEEEecC
Confidence 44556788999995557777763
No 479
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=80.86 E-value=44 Score=30.41 Aligned_cols=26 Identities=8% Similarity=-0.012 Sum_probs=22.9
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 237 MLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 237 ~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
.++.++.+|.+++.|.++|+++...+
T Consensus 461 ~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 461 ALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred EEEEECCCCEEEEEECCCCCEEeece
Confidence 78899999999999999999886544
No 480
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=80.74 E-value=26 Score=27.66 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=45.8
Q ss_pred cccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEcc
Q 023672 130 HMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVH 202 (279)
Q Consensus 130 ~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~ 202 (279)
+++...++|.+|+|+-.-..|.+.|.++|+.+..+.......-...-...++.-+-+++-.+ .++.|.|+|-.
T Consensus 147 NsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN~ 220 (299)
T PF14269_consen 147 NSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDNA 220 (299)
T ss_pred eeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcCC
Confidence 33455778899999988889999999999999988665220000001123333333444333 67778888773
No 481
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=80.64 E-value=29 Score=28.15 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=23.6
Q ss_pred cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEE
Q 023672 192 YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIG 241 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~ 241 (279)
.+|.+.-||..+ +....+. ..-...+.++.|| ++.+++.+
T Consensus 197 ~~GRl~~YD~~t-----K~~~VLl----d~L~F~NGlaLS~-d~sfvl~~ 236 (376)
T KOG1520|consen 197 PTGRLFRYDPST-----KVTKVLL----DGLYFPNGLALSP-DGSFVLVA 236 (376)
T ss_pred CccceEEecCcc-----cchhhhh----hcccccccccCCC-CCCEEEEE
Confidence 456677777765 2222221 1123467899999 77777665
No 482
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=80.40 E-value=4.5 Score=18.66 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=17.9
Q ss_pred eEEEEEccCCCcEEEEEeCCCcEEEE
Q 023672 225 MSAIAFSPTHTGMLAIGSYSQTSAIY 250 (279)
Q Consensus 225 v~~~~~sp~~~~~l~~~~~dg~i~~w 250 (279)
...++.++ +|.++++=+....|+++
T Consensus 4 P~gvav~~-~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDS-DGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEET-TSEEEEEECCCTEEEEE
T ss_pred CcEEEEeC-CCCEEEEECCCCEEEEC
Confidence 45777877 78888777777766654
No 483
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=79.88 E-value=25 Score=26.93 Aligned_cols=78 Identities=9% Similarity=-0.018 Sum_probs=47.8
Q ss_pred CceEEEEeeCcccccCCCCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEEC-CCCCEEEEecCCeEEE
Q 023672 120 ESVYDFCWFPHMSASDPTSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFN-PTGTKIFAGYNKSVRV 198 (279)
Q Consensus 120 ~~v~~~~~~~~~~~~~~~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~d~~i~~ 198 (279)
..|++++--....+-...-..++.|..++.|.+.|...-.....+....-+.. -+..-.|. -|.+.++++.||.|++
T Consensus 177 t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~--i~~~G~~devdyRI~Va~Rdg~iy~ 254 (257)
T PF14779_consen 177 TVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQLPSVPVF--ISVSGQYDEVDYRIVVACRDGKIYT 254 (257)
T ss_pred ceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEecCCCceE--EEEEeeeeccceEEEEEeCCCEEEE
Confidence 45666654333222122234789999999999999988877777776653110 01122343 4556666779998876
Q ss_pred E
Q 023672 199 F 199 (279)
Q Consensus 199 ~ 199 (279)
.
T Consensus 255 i 255 (257)
T PF14779_consen 255 I 255 (257)
T ss_pred E
Confidence 4
No 484
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=79.78 E-value=20 Score=29.85 Aligned_cols=62 Identities=21% Similarity=0.235 Sum_probs=43.7
Q ss_pred CCcEEEEecCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCC
Q 023672 137 TSCVFASTTRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRP 204 (279)
Q Consensus 137 ~~~~l~s~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~ 204 (279)
+.+-+++-+..|++.++.-...+.+..-.... .+..+++||.+.++++-..|.++++.+++.
T Consensus 327 ~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~------~~~~~~~Sp~~~~Ll~e~~gki~~~~l~Nr 388 (733)
T COG4590 327 NRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ------APQLVAMSPNQAYLLSEDQGKIRLAQLENR 388 (733)
T ss_pred ccceEEEEcCCCceeeeecccCcceehhhhhc------CcceeeeCcccchheeecCCceEEEEecCC
Confidence 34457777888888877654444333222222 455789999999999888999999999863
No 485
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=78.74 E-value=15 Score=25.06 Aligned_cols=53 Identities=15% Similarity=0.276 Sum_probs=28.0
Q ss_pred ceeeEEECCCCCEEE-Ee-cCCeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEcc
Q 023672 175 AAFSVAFNPTGTKIF-AG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSP 232 (279)
Q Consensus 175 ~v~~~~~~~~~~~l~-~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp 232 (279)
.+.-.-|.+|.+.++ +| .|+.|+.|.+......+.....+ ........+++-|
T Consensus 12 g~L~P~yD~dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~-----~s~~~~~G~~~lP 66 (136)
T PF08954_consen 12 GVLMPFYDEDTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEY-----RSPEPQKGFAFLP 66 (136)
T ss_dssp S-EEEEE-TTT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE-------SS--SEEEE--
T ss_pred ceeEeeEcCCCCEEEEEeccCcEEEEEEEcCCCCceEEcccc-----ccCCCeEeeEecC
Confidence 556677888888887 78 89999999998743233333333 2345566788888
No 486
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.46 E-value=25 Score=26.05 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=54.4
Q ss_pred CCcEEEEecC--CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEE--EecCCeEEEEEccCCCCceeeee
Q 023672 137 TSCVFASTTR--DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIF--AGYNKSVRVFDVHRPGRDFEKYS 212 (279)
Q Consensus 137 ~~~~l~s~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~--~~~d~~i~~~d~~~~~~~~~~~~ 212 (279)
++.++.+.+. ...|++||+.+++.+........ .+..=-...-+..+. +=.++.-..+|.++- +++.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~-----~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~----~~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD-----TVFGEGITKLGDYFYQLTWKEGVAFKYDADTL----EELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCc-----cccccceeeccceEEEEEeccceeEEEChHHh----hhhc
Confidence 4555666554 34699999999988777665521 111111112233333 448888899998872 3222
Q ss_pred ecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCC
Q 023672 213 TLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNM 255 (279)
Q Consensus 213 ~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~ 255 (279)
.+. ..+.-..++. ++.-|.++....+++.-|..+.
T Consensus 126 ~~~-----y~GeGWgLt~---d~~~LimsdGsatL~frdP~tf 160 (262)
T COG3823 126 RFS-----YEGEGWGLTS---DDKNLIMSDGSATLQFRDPKTF 160 (262)
T ss_pred ccc-----cCCcceeeec---CCcceEeeCCceEEEecCHHHh
Confidence 221 1222334443 3334555554555666665543
No 487
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=78.45 E-value=36 Score=27.90 Aligned_cols=129 Identities=11% Similarity=0.217 Sum_probs=73.0
Q ss_pred ceEEEEeeCcccccCCCCc-EEEEecCCCcEEEEECC---CC----eeeEEEeccCccccccceeeEEECCCCCEEEEe-
Q 023672 121 SVYDFCWFPHMSASDPTSC-VFASTTRDHPIHLWDAT---TG----LLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG- 191 (279)
Q Consensus 121 ~v~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~i~d~~---~~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 191 (279)
.++.+|.... ..++. +++....+|.+.-|.+. .+ +.++.+.... .+..|........|+.+
T Consensus 157 e~yGlcly~~----~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s------Q~EGCVVDDe~g~LYvgE 226 (381)
T PF02333_consen 157 EPYGLCLYRS----PSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGS------QPEGCVVDDETGRLYVGE 226 (381)
T ss_dssp SEEEEEEEE-----TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-------EEEEEEETTTTEEEEEE
T ss_pred cceeeEEeec----CCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCC------cceEEEEecccCCEEEec
Confidence 4666665321 12343 56667788888777664 33 3566666544 77889999888888888
Q ss_pred cCCeEEEEEccCCCCc-eeeeeecccccCCCCCceEEEEEcc--C-CCcEEEEEeCCCcEEEEecCCC-eEEEEE
Q 023672 192 YNKSVRVFDVHRPGRD-FEKYSTLKGNKEGQAGIMSAIAFSP--T-HTGMLAIGSYSQTSAIYREDNM-ELLYVL 261 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~sp--~-~~~~l~~~~~dg~i~~wd~~~~-~~~~~~ 261 (279)
.+.-|.-|+.+..... ...+.... -......|-.+++-. + .+.+|++.-.+++..||+.... ..+..+
T Consensus 227 E~~GIW~y~Aep~~~~~~~~v~~~~--g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 227 EDVGIWRYDAEPEGGNDRTLVASAD--GDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp TTTEEEEEESSCCC-S--EEEEEBS--SSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred CccEEEEEecCCCCCCcceeeeccc--ccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 8888888888743221 12221111 122345677777743 1 2345556556778999997653 444444
No 488
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.08 E-value=16 Score=32.42 Aligned_cols=51 Identities=12% Similarity=0.157 Sum_probs=37.7
Q ss_pred CCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccC
Q 023672 147 DHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHR 203 (279)
Q Consensus 147 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~ 203 (279)
...|+|+++. |+.+..+.-... .+-.+.|+.+..+|....+|++++|++..
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~-----~lI~mgWs~~eeLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHG-----ELIGMGWSDDEELICVQKDGTVHVYGLLG 113 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCC-----CeeeecccCCceEEEEeccceEEEeecch
Confidence 3457888864 555544443332 56689999999888889999999999974
No 489
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=77.84 E-value=5.6 Score=18.35 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=19.4
Q ss_pred ceEEEEEccCCCcEEEEEeCCCcEEEEe
Q 023672 224 IMSAIAFSPTHTGMLAIGSYSQTSAIYR 251 (279)
Q Consensus 224 ~v~~~~~sp~~~~~l~~~~~dg~i~~wd 251 (279)
.|.+++.++ .+++.+...+.+|+|.
T Consensus 3 ~i~aia~g~---~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 3 EIEAIAAGD---SWVAVATSAGYLRIFS 27 (27)
T ss_pred eEEEEEccC---CEEEEEeCCCeEEecC
Confidence 467777766 5888888889999873
No 490
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=77.25 E-value=34 Score=27.00 Aligned_cols=204 Identities=13% Similarity=0.139 Sum_probs=103.0
Q ss_pred eEEEEEccCCCeEEEeeCCCeEEEEeCCCCccccccccccccCCCCcccceeee----cCCCceEEEEeeCcc-cccCCC
Q 023672 63 LKGIKWSPDGSSFLTSSEDKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVV----TEGESVYDFCWFPHM-SASDPT 137 (279)
Q Consensus 63 v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~-~~~~~~ 137 (279)
-+.|+++|.+.+-++....+...+||........... ..+..+.. ......+.+.|+... ..++..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~---------~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~ 95 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQD---------PLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGE 95 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCcc---------ceEEEecCCCCCCCCCCccEEEEeCCCceEEcCC
Confidence 4689999999887777778899999987221100000 00000110 011123334443221 111222
Q ss_pred C----cEEEEecCCCcEEEEECCCCee---eEEEeccCccccccceeeEEECC--CCCEEEEe--cCCeEEEEEccCCCC
Q 023672 138 S----CVFASTTRDHPIHLWDATTGLL---RCTYRAYDAVDEITAAFSVAFNP--TGTKIFAG--YNKSVRVFDVHRPGR 206 (279)
Q Consensus 138 ~----~~l~s~~~d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~--~d~~i~~~d~~~~~~ 206 (279)
+ ..++.+++||+|.-|...-+.. ...+....... ..--..+++-. .+.+|++. ..++|.|||-.-...
T Consensus 96 g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~-gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 96 GITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQ-GNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred CcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCC-cceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 1 2467889999999998643322 11111111100 00223455543 35667644 788888887643100
Q ss_pred ----------------ce----------eeeeeccc---------------------------ccCCCCCceEEEEEcc-
Q 023672 207 ----------------DF----------EKYSTLKG---------------------------NKEGQAGIMSAIAFSP- 232 (279)
Q Consensus 207 ----------------~~----------~~~~~~~~---------------------------~~~~~~~~v~~~~~sp- 232 (279)
++ ..+..... ...+.-...+.++..|
T Consensus 175 ~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 175 PLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred cCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChh
Confidence 00 00000000 0011112233444433
Q ss_pred ----CCCcEEEEEeCCCcEEEEecCCCeEEEEEeecCC------CEEEEEEccC
Q 023672 233 ----THTGMLAIGSYSQTSAIYREDNMELLYVLHGQEG------GVTHVSKLSS 276 (279)
Q Consensus 233 ----~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~------~v~~~~~spd 276 (279)
-.+.+|+---.||+|..||..+++.+..+....+ .+++|+|...
T Consensus 255 ~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng 308 (336)
T TIGR03118 255 SFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNG 308 (336)
T ss_pred hhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCC
Confidence 2455666656699999999999988877765443 5678887653
No 491
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=76.16 E-value=36 Score=26.83 Aligned_cols=119 Identities=12% Similarity=0.094 Sum_probs=64.2
Q ss_pred cccCCCCcEEEEecCCCcEEEEECC------CC-eeeEEEeccCccccccceeeEEECCCC-------------CEEEEe
Q 023672 132 SASDPTSCVFASTTRDHPIHLWDAT------TG-LLRCTYRAYDAVDEITAAFSVAFNPTG-------------TKIFAG 191 (279)
Q Consensus 132 ~~~~~~~~~l~s~~~d~~i~i~d~~------~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------~~l~~~ 191 (279)
++++|.+.+-++....+...+||.. .. ..+.++...........++.+.|+... .+|+++
T Consensus 28 ia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~t 107 (336)
T TIGR03118 28 LSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFLFVT 107 (336)
T ss_pred eEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEEEEe
Confidence 4668888888888888899999986 12 223333322221122256677777432 246677
Q ss_pred cCCeEEEEEccCCCCc-eeeeeecccccCCCCCc-eEEEEEccC-CCcEEEEE-eCCCcEEEEecC
Q 023672 192 YNKSVRVFDVHRPGRD-FEKYSTLKGNKEGQAGI-MSAIAFSPT-HTGMLAIG-SYSQTSAIYRED 253 (279)
Q Consensus 192 ~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~-v~~~~~sp~-~~~~l~~~-~~dg~i~~wd~~ 253 (279)
.||+|.-|...-.... ......+. ...... ...+++... .+.+|..+ -..++|.+||-.
T Consensus 108 EdGTisaW~p~v~~t~~~~~~~~~d---~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~ 170 (336)
T TIGR03118 108 EDGTLSGWAPALGTTRMTRAEIVVD---ASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS 170 (336)
T ss_pred CCceEEeecCcCCcccccccEEEEc---cCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc
Confidence 9999999986432110 00111111 111122 234555431 34455444 457889999853
No 492
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=75.90 E-value=33 Score=26.14 Aligned_cols=147 Identities=16% Similarity=0.227 Sum_probs=75.0
Q ss_pred eeeeeeEecCCCCcccceeeeeeccCCCCCceEEEEEccCCCeEEEeeC-C--CeEEEEeCCCCccccccccccccCCCC
Q 023672 32 YTWPLIRFDVPPHRTYHFYNQFRTSSIPNNFLKGIKWSPDGSSFLTSSE-D--KTLRIFSLPENGISYDVNACSLAKDQD 108 (279)
Q Consensus 32 ~~~~~~~~d~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-d--g~i~iwd~~~~~~~~~~~~~~~~~~~~ 108 (279)
..| ..+||+.+...... .....-...+-++.+||++|.+|+. | ..+++++..+... .+
T Consensus 45 ~a~-s~~yD~~tn~~rpl------~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~-----~~------- 105 (243)
T PF07250_consen 45 PAH-SVEYDPNTNTFRPL------TVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDG-----TC------- 105 (243)
T ss_pred eEE-EEEEecCCCcEEec------cCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCC-----CC-------
Confidence 445 56788888766431 1112233444567889999998876 2 3466776543000 00
Q ss_pred cccceeeecCCCceEEEEeeCcccccCCCCcEEEEecCCC-cEEEEECCCC-eeeEEEe--cc-CccccccceeeEEECC
Q 023672 109 SYEASLVVTEGESVYDFCWFPHMSASDPTSCVFASTTRDH-PIHLWDATTG-LLRCTYR--AY-DAVDEITAAFSVAFNP 183 (279)
Q Consensus 109 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~~~d~-~i~i~d~~~~-~~~~~~~--~~-~~~~~~~~v~~~~~~~ 183 (279)
...........-.|.|... .-+||+.|+.|+... +..+|.-... .....+. .. .......---.+...|
T Consensus 106 -----~w~e~~~~m~~~RWYpT~~-~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llP 179 (243)
T PF07250_consen 106 -----DWTESPNDMQSGRWYPTAT-TLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLP 179 (243)
T ss_pred -----CceECcccccCCCccccce-ECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcC
Confidence 0111111234446777643 367899888887764 3455554321 1111111 10 0000000112466789
Q ss_pred CCCEEEEecCCeEEEEEccCC
Q 023672 184 TGTKIFAGYNKSVRVFDVHRP 204 (279)
Q Consensus 184 ~~~~l~~~~d~~i~~~d~~~~ 204 (279)
+|++++.+..+ -.|||..+.
T Consensus 180 dG~lFi~an~~-s~i~d~~~n 199 (243)
T PF07250_consen 180 DGNLFIFANRG-SIIYDYKTN 199 (243)
T ss_pred CCCEEEEEcCC-cEEEeCCCC
Confidence 99998866433 345688763
No 493
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=75.69 E-value=58 Score=28.92 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=0.0
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeC---------CCCccccccccccccCCCCcccceeeecCCCceEEEEeeCc
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSL---------PENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPH 130 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (279)
.+.|-++.|.++++.+++.-.+|.|.+||. . ....+...+.--+|-++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~-----------------------l~~~~~~~v~ys~fv~~ 185 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQ-----------------------LKLKSSINVSYSKFVND 185 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccc-----------------------cccccccceehhhhhcc
Q ss_pred ccccCCCCcEEEEec---CCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEecCCeEEEEEccCCCCc
Q 023672 131 MSASDPTSCVFASTT---RDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAGYNKSVRVFDVHRPGRD 207 (279)
Q Consensus 131 ~~~~~~~~~~l~s~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~~~d~~~~~~~ 207 (279)
.-.-..+.-.++.+. ..-..+++.+ .......+......-.........|.-....++.=.++.|.+|++-. -+.
T Consensus 186 ~~~~~~~~~ll~v~~~~~~k~~ykL~~l-~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l~~~~i~~ysip~-f~~ 263 (670)
T PF10395_consen 186 FELENGKDLLLTVSQLSNSKLSYKLISL-SNESSSIFELSSTILENFGLEDSKFCYQFGKLYQLSKKTISSYSIPN-FQI 263 (670)
T ss_pred cccccCCceEEEEEEcCCCcEEEEEEEe-ccCCcceEEeehheeccCCcccceEEEeCCEEEEEeCCEEEEEEcCC-ceE
Q ss_pred eeeeeecccccCCCCCceEEEEEccCCCcEEEEEeCCCcEEEEecCCCeEEEEEe
Q 023672 208 FEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGSYSQTSAIYREDNMELLYVLH 262 (279)
Q Consensus 208 ~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~ 262 (279)
...+.......... ..+.++.--. ..+.|++. +++|++.|+.-...+..+.
T Consensus 264 ~~tI~l~~ii~~~~-~~~vSl~~~s-~nRvLLs~--~nkIyLld~~~~siLse~~ 314 (670)
T PF10395_consen 264 QKTISLPSIIDKES-DDLVSLKPPS-PNRVLLSV--NNKIYLLDLKFESILSEFE 314 (670)
T ss_pred EEEEEechhhcccc-ccceEeecCC-CCeEEEEc--CCEEEEEeehhhhhhhhhh
No 494
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.42 E-value=64 Score=30.50 Aligned_cols=31 Identities=10% Similarity=0.330 Sum_probs=26.1
Q ss_pred CceEEEEEccCCCeEEEeeCCCeEEEEeCCC
Q 023672 61 NFLKGIKWSPDGSSFLTSSEDKTLRIFSLPE 91 (279)
Q Consensus 61 ~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~ 91 (279)
..-..++|+|...++|.++..|.|++|-...
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ 66 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPG 66 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccc
Confidence 3456789999999999999999999997653
No 495
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=73.60 E-value=9.9 Score=33.69 Aligned_cols=33 Identities=24% Similarity=0.542 Sum_probs=28.5
Q ss_pred CCceEEEEEccCCCeEEEeeCCCeEEEEeCCCC
Q 023672 60 NNFLKGIKWSPDGSSFLTSSEDKTLRIFSLPEN 92 (279)
Q Consensus 60 ~~~v~~~~~~~~~~~l~t~~~dg~i~iwd~~~~ 92 (279)
...++++.-+|.++.++.++.||+|.+|++...
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r 46 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPR 46 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeeccc
Confidence 456788888999999999999999999998743
No 496
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=73.42 E-value=39 Score=26.39 Aligned_cols=71 Identities=21% Similarity=0.357 Sum_probs=44.5
Q ss_pred CeEEEEEccCCCCceeeeeecccccCCCCCceEEEEEccCCCcEEEEEe------CCCcEEEEecCCCeEEEEEee----
Q 023672 194 KSVRVFDVHRPGRDFEKYSTLKGNKEGQAGIMSAIAFSPTHTGMLAIGS------YSQTSAIYREDNMELLYVLHG---- 263 (279)
Q Consensus 194 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~~l~~~~------~dg~i~~wd~~~~~~~~~~~~---- 263 (279)
..|++||.... .+..+. .+-.+.|+++.|.. +.++++.|. ....+..||..+..-. .+..
T Consensus 16 ~~lC~yd~~~~-----qW~~~g---~~i~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~-~~~~~~s~ 85 (281)
T PF12768_consen 16 PGLCLYDTDNS-----QWSSPG---NGISGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQTWS-SLGGGSSN 85 (281)
T ss_pred CEEEEEECCCC-----EeecCC---CCceEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCeee-ecCCcccc
Confidence 46899998862 222221 34567899999987 777888774 3445888998765432 2222
Q ss_pred -cCCCEEEEEEc
Q 023672 264 -QEGGVTHVSKL 274 (279)
Q Consensus 264 -~~~~v~~~~~s 274 (279)
-.++|..+.+.
T Consensus 86 ~ipgpv~a~~~~ 97 (281)
T PF12768_consen 86 SIPGPVTALTFI 97 (281)
T ss_pred cCCCcEEEEEee
Confidence 13566666653
No 497
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=71.69 E-value=11 Score=23.19 Aligned_cols=29 Identities=24% Similarity=0.453 Sum_probs=22.9
Q ss_pred ceEEEEEccCCCeEEEee-CCCeEEEEeCC
Q 023672 62 FLKGIKWSPDGSSFLTSS-EDKTLRIFSLP 90 (279)
Q Consensus 62 ~v~~~~~~~~~~~l~t~~-~dg~i~iwd~~ 90 (279)
.-++|.++|++++|.+++ ..+.|.+|...
T Consensus 55 ~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 55 FANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 357899999999887655 46889999875
No 498
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=71.65 E-value=8.6 Score=19.35 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=14.8
Q ss_pred CcEEEEEeCCCcEEEEecCC
Q 023672 235 TGMLAIGSYSQTSAIYREDN 254 (279)
Q Consensus 235 ~~~l~~~~~dg~i~~wd~~~ 254 (279)
+..++.++.||.++.+|.++
T Consensus 21 ~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 21 GGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp TSEEEEE-TTSEEEEEETT-
T ss_pred CCEEEEEcCCCEEEEEeCCC
Confidence 45788888899999998764
No 499
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=71.44 E-value=1.9 Score=19.04 Aligned_cols=7 Identities=0% Similarity=-0.202 Sum_probs=5.2
Q ss_pred EEccCCC
Q 023672 272 SKLSSAY 278 (279)
Q Consensus 272 ~~spdg~ 278 (279)
.|||+||
T Consensus 7 ~FSp~Gr 13 (23)
T PF10584_consen 7 TFSPDGR 13 (23)
T ss_dssp SBBTTSS
T ss_pred eECCCCe
Confidence 3788886
No 500
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=70.05 E-value=1e+02 Score=29.43 Aligned_cols=175 Identities=11% Similarity=0.087 Sum_probs=0.0
Q ss_pred eEEEeeC---------CCeEEEEeCCCCccccccccccccCCCCcccceeeecCCCceEEEEeeCcccccCCCCcEEEEe
Q 023672 74 SFLTSSE---------DKTLRIFSLPENGISYDVNACSLAKDQDSYEASLVVTEGESVYDFCWFPHMSASDPTSCVFAST 144 (279)
Q Consensus 74 ~l~t~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~l~s~ 144 (279)
+|++|.. -|.+.|||+-+ ............+..........++|..++- -..+|+++
T Consensus 1048 ylavGT~~~~gEDv~~RGr~hi~diIe-----VVPepgkP~t~~KlKel~~eE~KGtVsavce---------V~G~l~~~ 1113 (1366)
T KOG1896|consen 1048 YLAVGTAFIQGEDVPARGRIHIFDIIE-----VVPEPGKPFTKNKLKELYIEEQKGTVSAVCE---------VRGHLLSS 1113 (1366)
T ss_pred eEEEEEeecccccccCcccEEEEEEEE-----ecCCCCCCcccceeeeeehhhcccceEEEEE---------eccEEEEc
Q ss_pred cCCCcEEEEECCCCeeeEEEeccCccccccceeeEEECCCCCEEEEe-cCCeEEEEEccCCCCceeeeeecccccCCCCC
Q 023672 145 TRDHPIHLWDATTGLLRCTYRAYDAVDEITAAFSVAFNPTGTKIFAG-YNKSVRVFDVHRPGRDFEKYSTLKGNKEGQAG 223 (279)
Q Consensus 145 ~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 223 (279)
. ..+|.+|+++....+--...... +++-....--.++|+.| --..|.+.-... +.............-
T Consensus 1114 ~-GqKI~v~~l~r~~~ligVaFiD~-----~~yv~s~~~vknlIl~gDV~ksisfl~fqe-----ep~rlsL~srd~~~l 1182 (1366)
T KOG1896|consen 1114 Q-GQKIIVRKLDRDSELIGVAFIDL-----PLYVHSMKVVKNLILAGDVMKSISFLGFQE-----EPYRLSLLSRDFEPL 1182 (1366)
T ss_pred c-CcEEEEEEeccCCcceeeEEecc-----ceeEEehhhhhhheehhhhhhceEEEEEcc-----CceEEEEeecCCchh
Q ss_pred ceEEEEEccCCCc-EEEEEeCCCcEEEE--------ecCCCeEEEEEeecCCCEEEEEE
Q 023672 224 IMSAIAFSPTHTG-MLAIGSYSQTSAIY--------REDNMELLYVLHGQEGGVTHVSK 273 (279)
Q Consensus 224 ~v~~~~~sp~~~~-~l~~~~~dg~i~~w--------d~~~~~~~~~~~~~~~~v~~~~~ 273 (279)
.+.++.|--++++ .++++..++.|++| .+...+++..-.-|-+.+...-|
T Consensus 1183 ~v~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~~vs~m~ 1241 (1366)
T KOG1896|consen 1183 NVYSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGAHVSTMF 1241 (1366)
T ss_pred hceeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEeccceeeeE
Done!