BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023674
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
GS+ ++ K+CV+C + + +LPCRH C+C C K Q +CP+CRQ V+
Sbjct: 4 GSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQES 59
Query: 269 LEIK 272
+
Sbjct: 60 FALS 63
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 221 KECVICLSEPRDTTVLPCR--HMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271
K C +C PRD ++ R H+ C CA+ L+ CPIC++ ++ ++++
Sbjct: 8 KPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV 60
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICR 262
+ C +C+ + +PC H+ +C ECA L+ +CPICR
Sbjct: 296 RTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICR 333
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 37.4 bits (85), Expect = 0.010, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
EC ICL LPC+H+ C C K + RC +CRQ +
Sbjct: 17 ECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEI 59
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 218 DSGKECVICLSEPRDTTVLPCR--HMCMCSECAKVLQFQTNRCPICRQPVERLL 269
++ + CVIC P++ ++ + H+ C CAK L+ + CP+CRQP++ ++
Sbjct: 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 218 DSGKECVICLSEPRDTTVLPCR--HMCMCSECAKVLQFQTNRCPICRQPVERLL 269
++ + CVIC P++ ++ + H+ C CAK L+ + CP+CRQP++ ++
Sbjct: 5 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 58
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266
+ C +CL +PC H+ +C+ECA LQ CPICR PV
Sbjct: 14 RTCKVCLDRAVSIVFVPCGHL-VCAECAPGLQL----CPICRAPVR 54
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
C++C E ++T PC H C CA LQ CP+CR VE +
Sbjct: 21 CMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHV 62
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266
+ C +C+ + +PC H+ +C +CA L+ +CPICR ++
Sbjct: 25 RTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLR----KCPICRSTIK 66
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 33.1 bits (74), Expect = 0.18, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICR 262
+EC IC+ + R +LPC H C +C + CPICR
Sbjct: 16 EECCICM-DGRADLILPCAH-SFCQKCIDKWSDRHRNCPICR 55
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Query: 220 GKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 269
+ C ICL +P + ++ LPC H C C Q CP+C+ PVE ++
Sbjct: 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVV 54
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICR 262
C IC +D + PC H+ MC+ C Q + CP CR
Sbjct: 341 CKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCR 380
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAK--VLQFQTNRCPICRQ 263
GS+ D C+IC D V+PC C EC + +L+ + CP C Q
Sbjct: 4 GSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICR 262
C IC +D + PC H+ MC+ C Q + CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 376
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICR 262
C IC +D + PC H+ MC+ C Q + CP CR
Sbjct: 337 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 376
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICR 262
C IC +D + PC H+ MC+ C Q + CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 374
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICR 262
C IC +D + PC H+ MC+ C Q + CP CR
Sbjct: 335 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 374
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 30.4 bits (67), Expect = 1.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 209 GSTVAGDETDSGKECVICLSE--PRDTT-VLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
GS+ E + + C +CL + PRD + PC+H K L+ + CP+C PV
Sbjct: 4 GSSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR-KVCPLCNMPV 62
Query: 266 ERLLEI 271
+L ++
Sbjct: 63 LQLAQL 68
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICRQPVERLLEIKVN 274
C IC +D + PC H+ MC+ C Q + CP CR ++ I V+
Sbjct: 29 CKICAENDKDVKIEPCGHL-MCTSCLTAWQESDGQGCPFCRCEIKGTEPIIVD 80
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 30.0 bits (66), Expect = 1.7, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 218 DSGKECVICLSEPRD---TTVLP-CRHMCMCSECAKVLQFQTNRCPICRQPV 265
D G EC +CL+E D LP C H +EC + + CP+CR V
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGH-GFHAECVDMWLGSHSTCPLCRLTV 53
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICR 262
C IC +D + PC H+ MC+ C Q + CP CR
Sbjct: 27 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 66
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261
K C IC+ +PC H+ C +CA+ + ++CP+C
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMC 61
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICR 262
C IC +D + PC H+ MC+ C Q + CP CR
Sbjct: 30 CKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCR 69
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261
K C IC+ +PC H+ C +CA+ + ++CP+C
Sbjct: 25 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMC 61
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261
K C IC+ +PC H+ C +CA+ + ++CP+C
Sbjct: 26 KLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMC 62
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 214 GDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266
D ++ +C+IC + L C H CS C + CPICR+ ++
Sbjct: 58 NDVLENELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIK 109
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 28.5 bits (62), Expect = 4.5, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 218 DSGKECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPI 260
+S EC ICL R+ PC H C C K ++ ++CP+
Sbjct: 23 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPV 65
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 214 GDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
D ++ +C+IC + L C H CS C + CPICR+ +
Sbjct: 47 NDVLENELQCIICSEYFIEAVTLNCAH-SFCSYCINEWMKRKIECPICRKDI 97
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 28.1 bits (61), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAK--VLQFQTNRCPICRQ 263
C+IC D V+PC C EC + +L+ + CP C Q
Sbjct: 16 CLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 58
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 214 GDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265
D ++ +C+IC + L C H CS C + CPICR+ +
Sbjct: 47 NDVLENELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDI 97
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 222 ECVICLS---EPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266
+C ICLS E D LPC H+ C +CPICR +E
Sbjct: 16 KCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIE 62
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 27.7 bits (60), Expect = 7.5, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 219 SGKECVICLSEPRDTTVLPCRHMCMCSEC-AKVLQFQTNRCPI 260
S EC ICL R+ PC H C C K ++ ++CP+
Sbjct: 5 SKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPV 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,853,035
Number of Sequences: 62578
Number of extensions: 245012
Number of successful extensions: 414
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 41
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)