BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023674
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LFH6|LUL2_ARATH Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana
GN=LUL2 PE=2 SV=1
Length = 299
Score = 276 bits (705), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 152/292 (52%), Positives = 174/292 (59%), Gaps = 70/292 (23%)
Query: 37 PYPSQYPNQYYPLYPGYYPPPVPVHGAYGYHHMPSGHYPAHPPPPPPPPQYMEHQKAVTI 96
PYP+ PN Y G YP P Y Y M S P QY+EHQ+AVTI
Sbjct: 21 PYPN--PN---AQYQGNYPSPYQDCARYPYGEMAS------------PVQYVEHQEAVTI 63
Query: 97 RNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLK 156
RND+N+KKETLR+EPDE+NPG+FL++FTFDA+ PGSITV FF KE DC LIATKE+L
Sbjct: 64 RNDINLKKETLRLEPDEQNPGKFLLSFTFDASVPGSITVMFFAKEGKDCNLIATKEDLFP 123
Query: 157 PVTITFQQGLGQKFRQPCGTGIDLSMFDEIAL---------------------------- 188
++F +GL Q+F+Q CGTGID S E L
Sbjct: 124 STQVSFAKGLEQRFKQACGTGIDFSDMSEADLVEANETDVYHVAVKAEVVSEDDHPESGT 183
Query: 189 ----------------------TKQILWVNRVRYELQEIYGIGSTV---AGDETDSGKEC 223
KQILWVN RY LQEIYGIG+TV D + GKEC
Sbjct: 184 PNRQITHVVLEKDHKGEYKARVVKQILWVNGNRYVLQEIYGIGNTVDDNGEDANERGKEC 243
Query: 224 VICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNN 275
VICLSEPRDTTVLPCRHMCMCS CAK+L+FQTN CPICRQPV+RLLEI VNN
Sbjct: 244 VICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQPVDRLLEITVNN 295
>sp|Q9LYW5|LUL1_ARATH Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana
GN=LUL1 PE=1 SV=1
Length = 337
Score = 273 bits (698), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 161/328 (49%), Positives = 191/328 (58%), Gaps = 65/328 (19%)
Query: 8 RRHHSNIPPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGY-YPPPV------PV 60
RR SNIPP +++VFAA PY + PN Y YPG PPPV P
Sbjct: 13 RRQRSNIPPAMETAPLELPPNRFVFAAVPPYLNPNPN-YVDQYPGNCLPPPVTEPPMLPY 71
Query: 61 HGAYGYHHMPSGHYPAHPP------PPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEE 114
+ + +H+ P+ + HP P PPP Y+ HQKAVTIRNDVN+KK+TL + PD E
Sbjct: 72 NFNHLHHYPPNSYQLPHPLFHGGRYPILPPPTYV-HQKAVTIRNDVNLKKKTLTLIPDPE 130
Query: 115 NPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPC 174
NP + LV+FTFDA+ PG ITV FF ED +C L ATKE+ L P+T F +GLGQKF Q
Sbjct: 131 NPNRLLVSFTFDASMPGRITVVFFATEDAECNLRATKEDTLPPITFDFGEGLGQKFIQSS 190
Query: 175 GTGIDLSMFDE------------------------------------------------I 186
GTGIDL+ F + I
Sbjct: 191 GTGIDLTAFKDSELFKEVDTDVFPLAVKAEATPAEEGKSGSTNVQITQVVYTKEKGEIKI 250
Query: 187 ALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSE 246
+ KQILWVN+ RYEL EIYGI +TV G +D GKECV+CLSEPRDTTVLPCRHMCMCS
Sbjct: 251 EVVKQILWVNKRRYELLEIYGIENTVDG--SDEGKECVVCLSEPRDTTVLPCRHMCMCSG 308
Query: 247 CAKVLQFQTNRCPICRQPVERLLEIKVN 274
CAK L+FQTN CP+CRQPVE LLEI N
Sbjct: 309 CAKALRFQTNLCPVCRQPVEMLLEINKN 336
>sp|Q9S752|LOFG2_ARATH Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana
GN=LOG2 PE=1 SV=1
Length = 388
Score = 258 bits (658), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 138/264 (52%), Positives = 168/264 (63%), Gaps = 66/264 (25%)
Query: 71 SGHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAP 130
+GH A P P Y+EHQKAVTIRNDVN+KKE+LR+EPD +NPG+FLV+FTFDA
Sbjct: 113 AGHMMAQPTP------YVEHQKAVTIRNDVNLKKESLRLEPDPDNPGRFLVSFTFDATVS 166
Query: 131 GSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALTK 190
G I+V FF KE DC L ATKE++L P+T+ F++GLGQKF+Q G+GID S+F+++ L K
Sbjct: 167 GRISVIFFAKESEDCKLTATKEDILPPITLDFEKGLGQKFKQSSGSGIDFSVFEDVELFK 226
Query: 191 ------------------------------------------------QILWVNRVRY-- 200
+I V ++ +
Sbjct: 227 AAADTEIYPLAVKAEAAPSGGENEEEERSGSKNAQITQAVYEKDKGEIKIRVVKQILWVN 286
Query: 201 ----ELQEIYGIGSTVAGDETDS------GKECVICLSEPRDTTVLPCRHMCMCSECAKV 250
ELQEIYGIG+TV GD+ + GKECVICLSEPRDTTVLPCRHMCMCS CAKV
Sbjct: 287 GTRYELQEIYGIGNTVEGDDDSADDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKV 346
Query: 251 LQFQTNRCPICRQPVERLLEIKVN 274
L+FQTNRCPICRQPVERLLEIKV+
Sbjct: 347 LRFQTNRCPICRQPVERLLEIKVH 370
>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana
GN=LUL3 PE=1 SV=1
Length = 378
Score = 216 bits (550), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 165/310 (53%), Gaps = 79/310 (25%)
Query: 37 PYPSQY-PNQYYPLY-PGYYPPPVPVHGAYGYHHMPSGHYPAHPP----PPP-----PPP 85
PY Y NQYYP P Y+ GYHH +G P P P P PP
Sbjct: 78 PYGQNYHQNQYYPQQAPPYFT---------GYHH--NGFNPMMRPVYFGPTPVAVMEPPA 126
Query: 86 QYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDC 145
Y+EHQ A ++NDVNV K T+R+ D+ NPG +LV+F FDA GS T+ FFG+E+ C
Sbjct: 127 PYVEHQTAKKVKNDVNVNKATVRLVADDLNPGHYLVSFVFDALFDGSFTIIFFGEEESKC 186
Query: 146 TLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFD--------------------- 184
T++ E P+ + FQ+G GQKF Q GTGIDL F
Sbjct: 187 TIVPHLPEAFPPIKVPFQKGAGQKFLQAPGTGIDLGFFSLDDLSKPSPEEVYPLVISAET 246
Query: 185 ------------------------------EIALTKQILWVNRVRYELQEIYGI------ 208
++ + KQILW+ RYELQE+YGI
Sbjct: 247 VISPSSVSEEPLVHKQITQAVLEKTNDGSFKVKVMKQILWIEGERYELQELYGIDNSITQ 306
Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
G+ +G E GKECVICL+EP+DT V+PCRH+C+CS+CA+ L+FQTN+CPICRQP+ L
Sbjct: 307 GTAASGLEDTGGKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHEL 366
Query: 269 LEIKVNNAAD 278
++IKV ++ +
Sbjct: 367 VKIKVESSDE 376
>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana
GN=LUL4 PE=2 SV=1
Length = 359
Score = 207 bits (527), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/246 (43%), Positives = 143/246 (58%), Gaps = 54/246 (21%)
Query: 87 YMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCT 146
Y+E Q A +RNDVNV ++T+R+E D+ PG LV+F FDA GS T+ FF KE+ +CT
Sbjct: 112 YLEQQNAKKVRNDVNVHRDTVRLEVDDLVPGHHLVSFVFDALFDGSFTITFFAKEEPNCT 171
Query: 147 LIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMF--DEIA----------------- 187
+I E+ P FQ+G GQKF QP GTG DLS F D+++
Sbjct: 172 IIPQFPEVYSPTRFHFQKGPGQKFLQPSGTGTDLSFFVLDDLSKPLEEDVYPLVISAETI 231
Query: 188 --------------------------------LTKQILWVNRVRYELQEIYGI---GSTV 212
+ KQILW+ VRYEL+E+YG G+
Sbjct: 232 ISPNSISEQSSVHKQVTQAVLEKDNDGSFKVKVVKQILWIEGVRYELRELYGSTTQGAAS 291
Query: 213 AGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 272
DE+ SG ECVIC++E +DT VLPCRH+CMCS+CAK L+ Q+N+CPICRQP+E LLEIK
Sbjct: 292 GLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIK 351
Query: 273 VNNAAD 278
+N++ +
Sbjct: 352 MNSSDE 357
>sp|Q96PX1|RN157_HUMAN RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=1 SV=3
Length = 679
Score = 117 bits (293), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 87/268 (32%), Positives = 130/268 (48%), Gaps = 70/268 (26%)
Query: 72 GHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FL 120
G+ P P PPPQ + T+R+ VN++K+TLR+ + ++PG+ +
Sbjct: 64 GNRPVVFPYAAPPPQ----EPVKTLRSLVNIRKDTLRLVKCAEEVKSPGEEASKAKVHYN 119
Query: 121 VAFTFDAAAPGSITVAFFGKEDVDCTLIAT--KEELLKPVTITFQQGLGQKFRQPCGT-- 176
V FTFD A +IT+ + E+ + + K+ L+ T+ +++G+ Q+F P T
Sbjct: 120 VEFTFDTDARVAITIYYQATEEFQNGIASYIPKDNSLQSETVQYKRGVCQQFCLPSHTVD 179
Query: 177 ---------GIDL----------SMFDE------------------------IALTKQIL 193
G DL ++ DE + KQ
Sbjct: 180 PSEWAEEELGFDLDREVYPLVVHAVVDEGDEYFGHCHVLLGTFEKHTDGTFCVKPLKQKQ 239
Query: 194 WVNRVRYELQEIYGI-------GSTVAGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCS 245
V+ V Y LQEIYGI S VA DE +D+ ECV+CLS+ RDT +LPCRH+C+C+
Sbjct: 240 VVDGVSYLLQEIYGIENKYNTQDSKVAEDEVSDNSAECVVCLSDVRDTLILPCRHLCLCN 299
Query: 246 ECAKVLQFQTNRCPICRQPVERLLEIKV 273
CA L++Q N CPICR P LL+I+
Sbjct: 300 TCADTLRYQANNCPICRLPFRALLQIRA 327
>sp|Q3TEL6|RN157_MOUSE RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2
Length = 685
Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 86/268 (32%), Positives = 128/268 (47%), Gaps = 70/268 (26%)
Query: 72 GHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLR-------VEPDEENPGQ----FL 120
G+ P P PPPQ + T+R+ +N++K+TLR V+ E G+ +
Sbjct: 64 GNRPVAFPYAAPPPQ----EPVKTLRSLINIRKDTLRLVKCAEEVKSHGEEAGKAKVHYN 119
Query: 121 VAFTFDAAAPGSITVAFFGKEDVDCTLIAT--KEELLKPVTITFQQGLGQKFRQPCGT-- 176
V FTFD A +IT+ + E+ + + K+ L+ T+ +++G+ Q+F P T
Sbjct: 120 VEFTFDTDARVAITIYYQATEEFQNGIASYIPKDNSLQSETVHYKRGVFQQFCLPSHTVD 179
Query: 177 ---------GIDL----------SMFDE------------------------IALTKQIL 193
G DL ++ DE + KQ
Sbjct: 180 PSEWAEEELGFDLDREVYPLVVHAVVDEGDEYFGHCHVLLGTFEKHPDGTFCVKPLKQKQ 239
Query: 194 WVNRVRYELQEIYGI-------GSTVAGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCS 245
V+ V Y LQEIYGI S VA D+ +D+ ECV+CLS+ RDT +LPCRH+C+C+
Sbjct: 240 VVDGVSYLLQEIYGIENKYNTQDSKVAEDDVSDNSAECVVCLSDVRDTLILPCRHLCLCN 299
Query: 246 ECAKVLQFQTNRCPICRQPVERLLEIKV 273
CA L++Q N CPICR P LL+I+
Sbjct: 300 TCADTLRYQANNCPICRLPFRALLQIRA 327
>sp|Q5XIQ4|MGRN1_RAT E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1
PE=2 SV=1
Length = 533
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 120/252 (47%), Gaps = 69/252 (27%)
Query: 90 HQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FLVAFTFDAAAPGSITVAFF 138
H+ T+R+ VN++K++LR+ + D ++P + + + FTFDA A +IT+
Sbjct: 79 HEPVKTLRSLVNIRKDSLRLVRYKDDTDSPTEDGEKPRVLYSLEFTFDADARVAITIYCQ 138
Query: 139 GKEDV--DCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT------- 189
E+ T+ + K L+ T+ +++G+ Q+F P ID S + + L
Sbjct: 139 AVEEFVNGMTVYSCKNPSLQSETVHYKRGVSQQFSLP-SFKIDFSEWKDDELNFDLDRGV 197
Query: 190 -----------------------------------------KQILWVNRVRYELQEIYGI 208
KQ V+RV Y LQEIYGI
Sbjct: 198 FPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHVDGSFSVKPLKQKQIVDRVSYLLQEIYGI 257
Query: 209 GSTV------AGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261
+ + DE +D+ ECV+CLS+ RDT +LPCRH+C+C+ CA L++Q N CPIC
Sbjct: 258 ENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPIC 317
Query: 262 RQPVERLLEIKV 273
R P LL+I+
Sbjct: 318 RLPFRALLQIRA 329
>sp|Q9D074|MGRN1_MOUSE E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1
SV=2
Length = 532
Score = 111 bits (277), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 125/270 (46%), Gaps = 73/270 (27%)
Query: 72 GHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FL 120
G P P P P H+ T+R+ VN++K++LR+ + D ++P + +
Sbjct: 64 GSRPVQFPYVTPAP----HEPVKTLRSLVNIRKDSLRLVRYKEDADSPTEDGEKPRVLYS 119
Query: 121 VAFTFDAAAPGSITVAFFGKEDV--DCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGI 178
+ FTFDA A +IT+ E++ + + K L+ T+ +++G+ Q+F P I
Sbjct: 120 LEFTFDADARVAITIYCQAVEELVNGVAVYSCKNPSLQSETVHYKRGVSQQFSLP-SFKI 178
Query: 179 DLSMFDEIALT------------------------------------------------K 190
D S + + L K
Sbjct: 179 DFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHVDGSFSVKPLK 238
Query: 191 QILWVNRVRYELQEIYGIGSTV------AGDE-TDSGKECVICLSEPRDTTVLPCRHMCM 243
Q V+RV Y LQEIYGI + + DE +D+ ECV+CLS+ RDT +LPCRH+C+
Sbjct: 239 QKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLRDTLILPCRHLCL 298
Query: 244 CSECAKVLQFQTNRCPICRQPVERLLEIKV 273
C+ CA L++Q N CPICR P LL+I+
Sbjct: 299 CTSCADTLRYQANNCPICRLPFRALLQIRA 328
>sp|O60291|MGRN1_HUMAN E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1
SV=2
Length = 552
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 119/252 (47%), Gaps = 69/252 (27%)
Query: 90 HQKAVTIRNDVNVKKETLRV---EPDEENPGQ--------FLVAFTFDAAAPGSITVAFF 138
H+ T+R+ VN++K++LR+ + D ++P + + + FTFDA A +IT+
Sbjct: 78 HEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADARVAITIYCQ 137
Query: 139 GKEDV--DCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIALT------- 189
E+ + + K L+ T+ +++G+ Q+F P ID S + + L
Sbjct: 138 ASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLP-SFKIDFSEWKDDELNFDLDRGV 196
Query: 190 -----------------------------------------KQILWVNRVRYELQEIYGI 208
KQ V+RV Y LQEIYGI
Sbjct: 197 FPVVIQAVVDEGDVVEVTGHAHVLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGI 256
Query: 209 GSTV------AGDE-TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261
+ + DE +D+ ECV+CLS+ RDT +LPCRH+C+C+ CA L++Q N CPIC
Sbjct: 257 ENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPIC 316
Query: 262 RQPVERLLEIKV 273
R P LL+I+
Sbjct: 317 RLPFRALLQIRA 328
>sp|Q6INH1|RN157_XENLA RING finger protein 157 OS=Xenopus laevis GN=rnf157 PE=2 SV=1
Length = 674
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 122/269 (45%), Gaps = 72/269 (26%)
Query: 72 GHYPAHPPPPPPPPQYMEHQKAVTIRNDVNVKKETLR-VEPDEENPG----------QFL 120
G P P P PQ + T+R+ +N++K+TLR V EE +
Sbjct: 64 GSRPVTFPYTAPSPQ----EPVKTLRSLINIRKDTLRLVRCTEELKTTGVEGSRPKVHYN 119
Query: 121 VAFTFDAAAPGSITVAFFGKEDVDCTLIAT--KEELLKPVTITFQQGLGQKFRQPCGTGI 178
V FTFD A +IT+ + E+ + + K L+ T+ F++G+ Q+F P T +
Sbjct: 120 VEFTFDTDARVAITMYYQATEEFQGGIPSYLPKSSNLQSDTVHFKRGVSQQFCFPSHT-V 178
Query: 179 DLSMFDEIALT----------------------------------------------KQI 192
D S + E LT KQ
Sbjct: 179 DPSEWREEELTFDLDREVYPMVVHAVVEEGEEHLGHSHVLMATFEKHADGSFCVKPLKQK 238
Query: 193 LWVNRVRYELQEIYGI-------GSTVAGDE-TDSGKECVICLSEPRDTTVLPCRHMCMC 244
V+ V Y LQEIYGI S VA DE +D+ ECV+CLS+ RDT +LPCRH+C+C
Sbjct: 239 QVVDGVSYLLQEIYGIENKYNSQDSKVAEDELSDNSAECVVCLSDVRDTLILPCRHLCLC 298
Query: 245 SECAKVLQFQTNRCPICRQPVERLLEIKV 273
+ CA L++Q + CPICR P LL+I+
Sbjct: 299 NACADTLRYQASNCPICRLPFRALLQIRA 327
>sp|Q7ZUL9|MGRN1_DANRE Probable E3 ubiquitin-protein ligase MGRN1 OS=Danio rerio GN=mgrn1
PE=2 SV=1
Length = 529
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 113/249 (45%), Gaps = 65/249 (26%)
Query: 90 HQKAVTIRNDVNVKKETLRV-------EPDEENPGQ----FLVAFTFDAAAPGSITVAFF 138
H+ T+R+ VN++K++LR+ + E+ G + V F FD A +IT+
Sbjct: 78 HEPVKTLRSLVNIRKDSLRLVRYKDDSDSTPEDTGDPRVLYSVEFCFDTDARVAITLYCQ 137
Query: 139 GKEDV--DCTLIATKEELLKPVTITFQQGLGQKFRQP----------------------- 173
E+ + + K + T+ +++G+ Q+F P
Sbjct: 138 AFEEFANGMAIYSAKSPSMVSETVHYKRGINQQFSLPSFKIDFTKWKPEELNFDLDKGVF 197
Query: 174 -------CGTGIDLSMFDEIALT---------------KQILWVNRVRYELQEIYGIGS- 210
G D++ + L KQ V+RV Y LQEIYGI +
Sbjct: 198 PLVVQAIVDDGDDVTGHAHVLLAAFERHVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENR 257
Query: 211 ------TVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQP 264
+ + +D+ ECV+CLS+ RDT +LPCRH+C+C+ CA L++Q N CPICR P
Sbjct: 258 NNQETKSTEDENSDNSSECVVCLSDLRDTLILPCRHLCLCNACADTLRYQANNCPICRLP 317
Query: 265 VERLLEIKV 273
LL+I+
Sbjct: 318 FRALLQIRA 326
>sp|Q7M3S9|RNGB_DICDI RING finger protein B OS=Dictyostelium discoideum GN=rngB PE=2 SV=2
Length = 943
Score = 55.5 bits (132), Expect = 4e-07, Method: Composition-based stats.
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271
D+ CVIC S P + +LPCRH +CS+C L +CPICR +E + I
Sbjct: 889 DQLKDQNSCVICASNPPNIVLLPCRHSSLCSDCCSKL----TKCPICRSHIENKISI 941
>sp|O10296|IAP1_NPVOP Apoptosis inhibitor 1 OS=Orgyia pseudotsugata multicapsid
polyhedrosis virus GN=IAP1 PE=4 SV=1
Length = 275
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273
EC +CL RD +LPCRH C+C +C L +CP CRQ V ++I V
Sbjct: 226 ECKVCLERQRDAVLLPCRHFCVCMQCYFALD---GKCPTCRQDVADFIKIFV 274
>sp|P41435|IAP1_NPVAC Apoptosis inhibitor 1 OS=Autographa californica nuclear
polyhedrosis virus GN=IAP1 PE=4 SV=1
Length = 286
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 214 GDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273
D+ + EC +CL RD ++PCRH C+C +C L +CP CRQ V ++I V
Sbjct: 229 ADDIEEKYECKVCLERQRDAVLMPCRHFCVCVQCYFGLD---QKCPTCRQDVTDFIKIFV 285
>sp|Q8CJC5|NEUL3_MOUSE E3 ubiquitin-protein ligase NEURL3 OS=Mus musculus GN=Neurl3 PE=2
SV=1
Length = 254
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 209 GSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
G V E SG+ECVIC +T ++PC H C CA + T RCPICR +E +
Sbjct: 183 GEPVPESEVISGEECVICFHNTANTRLMPCGHSHFCGSCAWHIFKDTARCPICRWQIEEV 242
>sp|Q8BUH7|RNF26_MOUSE Ring finger protein 26 OS=Mus musculus GN=Rnf26 PE=2 SV=1
Length = 424
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQ----FQTNRCPICRQPVERLLE 270
E + K+CVIC + + +LPCRH+C+C C ++L + N CP+CR+ + + L
Sbjct: 363 KEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRN-CPLCRRSILQTLN 421
Query: 271 I 271
+
Sbjct: 422 V 422
>sp|Q5M870|NEUL3_RAT E3 ubiquitin-protein ligase NEURL3 OS=Rattus norvegicus GN=Neurl3
PE=2 SV=1
Length = 254
Score = 51.2 bits (121), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268
E SG+ECVIC +T ++PC H C CA + T RCP+CR +E +
Sbjct: 189 SEVTSGEECVICFHNTANTRLMPCGHSQFCGSCAWHIFKDTARCPMCRWQIEEV 242
>sp|P29503|NEUR_DROME Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2
Length = 754
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 216 ETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ---TNRCPICRQPVERLLE 270
TDS EC IC P D+ + C HMCMC +CA + Q++ +CP+CR + ++
Sbjct: 694 STDSSAECTICYENPIDSVLYMCGHMCMCYDCA-IEQWRGVGGGQCPLCRAVIRDVIR 750
>sp|Q24746|NEUR_DROVI Protein neuralized OS=Drosophila virilis GN=neur PE=4 SV=1
Length = 747
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 4/58 (6%)
Query: 216 ETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ---TNRCPICRQPVERLLE 270
TDS EC IC P D+ + C HMCMC +CA + Q++ +CP+CR + ++
Sbjct: 687 STDSSAECTICYENPIDSVLYMCGHMCMCYDCA-IEQWRGVGGGQCPLCRAVIRDVIR 743
>sp|A8MQ27|NEU1B_HUMAN E3 ubiquitin-protein ligase NEURL1B OS=Homo sapiens GN=NEURL1B PE=1
SV=1
Length = 555
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICRQPVERLLEI 271
EC +C DT + C HMC+C C L+ Q CPICR+P++ +++I
Sbjct: 502 ECTVCFDGEVDTVIYTCGHMCLCHSCGLRLKRQARACCPICRRPIKDVIKI 552
>sp|Q9BY78|RNF26_HUMAN RING finger protein 26 OS=Homo sapiens GN=RNF26 PE=2 SV=1
Length = 433
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQ----FQTNRCPICRQPVERLLE 270
E + K+CVIC + + +LPCRH+C+C C ++L + N CP+CR+ + + L
Sbjct: 372 KEQEERKKCVICQDQSKTVLLLPCRHLCLCQACTEILMRHPVYHRN-CPLCRRGILQTLN 430
Query: 271 I 271
+
Sbjct: 431 V 431
>sp|Q0MW30|NEU1B_MOUSE E3 ubiquitin-protein ligase NEURL1B OS=Mus musculus GN=Neurl1b PE=1
SV=1
Length = 546
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICRQPVERLLEI 271
EC +C DT + C HMC+C C L+ Q CPICR+P++ +++I
Sbjct: 493 ECTVCFDSEVDTVIYTCGHMCLCHGCGLRLRRQARACCPICRRPIKDVIKI 543
>sp|Q5M7X9|MUL1A_DANRE Mitochondrial ubiquitin ligase activator of nfkb 1-A OS=Danio rerio
GN=mul1a PE=2 SV=1
Length = 341
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 17/91 (18%)
Query: 192 ILWVNR-------VRYELQ----EIYGIGSTVAGDETDSGKE--CVICLSEPRDTTVLPC 238
++W R +R+E + E G+G+ E D+G E CVICLS PR +L C
Sbjct: 250 LIWTGRRYYRQLKLRWEQENLRREFEGMGT--GEREEDNGVENACVICLSNPRGCVLLDC 307
Query: 239 RHMCMCSECAKVLQFQTNRCPICRQPVERLL 269
H+C C C + L CPICRQ ++R++
Sbjct: 308 GHVCCCFRCYQAL--PQPFCPICRQHIKRVV 336
>sp|Q7XI08|XB34_ORYSJ Probable E3 ubiquitin-protein ligase XBOS34 OS=Oryza sativa subsp.
japonica GN=XBOS34 PE=2 SV=1
Length = 513
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271
CVICL P + +PC HM C C K ++ + CPICR + +++ +
Sbjct: 462 CVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRL 510
>sp|P97587|CGRF1_RAT Cell growth regulator with RING finger domain protein 1 OS=Rattus
norvegicus GN=Cgrrf1 PE=2 SV=1
Length = 332
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 212 VAGDETD----SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267
+AG E D S K+CV+C + + +LPCRH C+C C V F+ +CP+CRQ V+
Sbjct: 259 LAGAEVDPVEESSKDCVVCQNGGVNWVLLPCRHACLCDSC--VCYFK--QCPMCRQFVQE 314
Query: 268 LLEIKVNNAAD 278
+ AD
Sbjct: 315 SFALCGQKEAD 325
>sp|Q6ZQM0|RFFL_MOUSE E3 ubiquitin-protein ligase rififylin OS=Mus musculus GN=Rffl PE=1
SV=1
Length = 377
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 195 VNRVRYELQEIYGIGSTVAGDETDSGKE---------CVICLSEPRDTTVLPCRHMCMCS 245
+ RV ++ G+ V+G+E +G C IC+ P D +L C HM C+
Sbjct: 293 MERVTRLYKDQKGLQHLVSGNEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT 352
Query: 246 ECAKVLQFQTNRCPICRQPVERLLEI 271
+C K + N CPICRQ V R + +
Sbjct: 353 KCGKRM----NECPICRQYVIRAVHV 374
>sp|Q4R7G8|MUL1_MACFA Mitochondrial ubiquitin ligase activator of NFKB 1 OS=Macaca
fascicularis GN=MUL1 PE=2 SV=1
Length = 352
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 269
D CV+CLS + L C H+C C+EC + L + +CPICRQ + R++
Sbjct: 294 DRESLKSACVVCLSSFKSCVFLECGHVCSCTECYRALP-EPKKCPICRQAITRVI 347
>sp|Q969V5|MUL1_HUMAN Mitochondrial ubiquitin ligase activator of NFKB 1 OS=Homo sapiens
GN=MUL1 PE=1 SV=1
Length = 352
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 269
D CV+CLS + L C H+C C+EC + L + +CPICRQ + R++
Sbjct: 294 DRESLKSACVVCLSSFKSCVFLECGHVCSCTECYRALP-EPKKCPICRQAITRVI 347
>sp|Q99675|CGRF1_HUMAN Cell growth regulator with RING finger domain protein 1 OS=Homo
sapiens GN=CGRRF1 PE=1 SV=1
Length = 332
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 202 LQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261
L E G+ + ++ K+CV+C + + +LPCRH C+C C K Q +CP+C
Sbjct: 253 LLEKVGLSESEVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMC 308
Query: 262 RQPVE 266
RQ V+
Sbjct: 309 RQFVQ 313
>sp|Q8BMJ7|CGRF1_MOUSE Cell growth regulator with RING finger domain protein 1 OS=Mus
musculus GN=Cgrrf1 PE=2 SV=1
Length = 332
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 8/59 (13%)
Query: 212 VAGDETD----SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266
+AG++ D S ++CV+C + + +LPCRH C+C C + + +CP+CRQ V+
Sbjct: 259 LAGNDGDPVEESSRDCVVCQNGGVNWVLLPCRHACLCDSCVRYFK----QCPMCRQFVQ 313
>sp|Q8CIN9|RFFL_RAT E3 ubiquitin-protein ligase rififylin OS=Rattus norvegicus GN=Rffl
PE=1 SV=1
Length = 362
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 13/86 (15%)
Query: 195 VNRVRYELQEIYGIGSTVAGDETDSGKE---------CVICLSEPRDTTVLPCRHMCMCS 245
+ RV ++ G+ V+G+E +G C IC+ P D +L C HM C+
Sbjct: 278 MERVTRLYKDQKGLQHLVSGNEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT 337
Query: 246 ECAKVLQFQTNRCPICRQPVERLLEI 271
+C K + N CPICRQ V R + +
Sbjct: 338 KCGKRM----NECPICRQYVIRAVHV 359
>sp|Q0WPJ7|RF298_ARATH Putative E3 ubiquitin-protein ligase RF298 OS=Arabidopsis thaliana
GN=RF298 PE=2 SV=1
Length = 814
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVERLLEIK 272
+ECV+CLSE LPC H +CS+C ++ + + CP CR ++R ++ +
Sbjct: 758 RECVMCLSEEMSVIFLPCAHQVLCSKCNQLHEKEAMEDCPSCRAKIQRRIQAR 810
>sp|Q8WZ73|RFFL_HUMAN E3 ubiquitin-protein ligase rififylin OS=Homo sapiens GN=RFFL PE=1
SV=1
Length = 363
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 195 VNRVRYELQEIYGIGSTVAGDETDSGKE---------CVICLSEPRDTTVLPCRHMCMCS 245
+ RV ++ G+ V+G E +G C IC+ P D +L C HM C+
Sbjct: 279 MERVTRLYKDQKGLQHLVSGAEDQNGGAVPSGLEENLCKICMDSPIDCVLLECGHMVTCT 338
Query: 246 ECAKVLQFQTNRCPICRQPVERLLEI 271
+C K + N CPICRQ V R + +
Sbjct: 339 KCGKRM----NECPICRQYVIRAVHV 360
>sp|Q923S6|NEU1A_MOUSE Neuralized-like protein 1A OS=Mus musculus GN=Neurl PE=1 SV=1
Length = 574
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICRQPVERLLE 270
EC IC DT + C HMC+C C L+ + CPICR+P++ +++
Sbjct: 520 ECTICYEHAVDTVIYTCGHMCLCYSCGLRLKKALHACCPICRRPIKDIIK 569
>sp|Q4FE47|XB35_ARATH Putative E3 ubiquitin-protein ligase XBAT35 OS=Arabidopsis thaliana
GN=XBAT35 PE=2 SV=1
Length = 462
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 210 STVAGDETDSGKE--CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267
++ G+ + G C ICL P + +PC H+ C C K ++ + CP+CR +++
Sbjct: 396 ASTEGERKEDGNTGTCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQ 455
Query: 268 LLEI 271
++++
Sbjct: 456 VIKL 459
>sp|O76050|NEU1A_HUMAN Neuralized-like protein 1A OS=Homo sapiens GN=NEURL PE=2 SV=1
Length = 574
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNR-CPICRQPVERLLE 270
EC IC DT + C HMC+C C L+ + CPICR+P++ +++
Sbjct: 520 ECTICYEHAVDTVIYTCGHMCLCYACGLRLKKALHACCPICRRPIKDIIK 569
>sp|Q6R7I2|IAP1_OSHVF Putative apoptosis inhibitor ORF42 OS=Ostreid herpesvirus 1
(isolate France) GN=ORF42 PE=4 SV=1
Length = 364
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE 270
+ +ECVICL DT + PC H +C C+ Q +CP+CR+ +E+ ++
Sbjct: 311 NDEECVICLGAKADTILKPCLHYSLCYGCST----QVQKCPLCRKKIEKRVQ 358
>sp|Q8VCM5|MUL1_MOUSE Mitochondrial ubiquitin ligase activator of NFKB 1 OS=Mus musculus
GN=Mul1 PE=2 SV=2
Length = 352
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 215 DETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 269
D CV+CLS + L C H+C C +C L + RCPICR+ + R++
Sbjct: 294 DRESLKSACVVCLSNFKSCVFLECGHVCSCRQCYLALP-EPKRCPICRREITRVI 347
>sp|Q557E7|CBLA_DICDI E3 ubiquitin-protein ligase cblA OS=Dictyostelium discoideum
GN=cblA-1 PE=1 SV=1
Length = 665
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 214 GDETDSGKE-CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271
+ +D K+ C +C+ +T L C H+ CS C+ L+ +CPICR + R++ I
Sbjct: 608 NNGSDESKDLCTVCMDNEINTVFLECGHLSCCSLCSVKLK----KCPICRSRITRVINI 662
>sp|Q9FPH0|XB34_ARATH Putative E3 ubiquitin-protein ligase XBAT34 OS=Arabidopsis thaliana
GN=XBAT34 PE=2 SV=1
Length = 376
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271
CVIC+ P + +PC H+ C C K ++ + CP+CR +++++++
Sbjct: 325 CVICVDAPSEAVCVPCGHVAGCISCLKEIENKKMGCPVCRANIDQVIKL 373
>sp|Q6AYH3|RNF34_RAT E3 ubiquitin-protein ligase RNF34 OS=Rattus norvegicus GN=Rnf34
PE=1 SV=1
Length = 381
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 195 VNRV---RYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVL 251
VNR+ E Q+ YG + +E DS C IC+ D +L C HM C++C K
Sbjct: 305 VNRLYKENEENQKSYGERMQLQDEEDDS--LCRICMDAVIDCVLLECGHMVTCTKCGK-- 360
Query: 252 QFQTNRCPICRQPVERLLEI 271
+ + CPICRQ V R + +
Sbjct: 361 --RMSECPICRQYVVRAVHV 378
>sp|Q99KR6|RNF34_MOUSE E3 ubiquitin-protein ligase RNF34 OS=Mus musculus GN=Rnf34 PE=1
SV=1
Length = 376
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 195 VNRV---RYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVL 251
VNR+ E Q+ YG + +E DS C IC+ D +L C HM C++C K
Sbjct: 300 VNRLYKENEENQKSYGERMQLQDEEDDS--LCRICMDAVIDCVLLECGHMVTCTKCGK-- 355
Query: 252 QFQTNRCPICRQPVERLLEI 271
+ + CPICRQ V R + +
Sbjct: 356 --RMSECPICRQYVVRAVHV 373
>sp|Q6GNY1|MIB1_XENLA E3 ubiquitin-protein ligase mib1 OS=Xenopus laevis GN=mib1 PE=2
SV=1
Length = 1011
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267
+ECV+C + PC HMC C CA +++ +C CR VER
Sbjct: 865 EECVVCSDKKAAVLFQPCGHMCACENCASLMK----KCVQCRAVVER 907
Score = 41.2 bits (95), Expect = 0.009, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 211 TVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE 270
++ +++++ +EC++C RDT PC H+ CS C+ + +C +C++ V+ +
Sbjct: 808 SMINNDSETLEECMVCSDLKRDTLFGPCGHIATCSLCSP----RVKKCLLCKEQVQSRTK 863
Query: 271 IK 272
I+
Sbjct: 864 IE 865
>sp|Q86YT6|MIB1_HUMAN E3 ubiquitin-protein ligase MIB1 OS=Homo sapiens GN=MIB1 PE=1 SV=1
Length = 1006
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267
+ECV+C + PC HMC C CA +++ +C CR VER
Sbjct: 864 EECVVCSDKKAAVLFQPCGHMCACENCANLMK----KCVQCRAVVER 906
Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 211 TVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE 270
++ +++++ +EC++C RDT PC H+ CS C+ + +C IC++ V+ +
Sbjct: 807 SMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSP----RVKKCLICKEQVQSRTK 862
Query: 271 IK 272
I+
Sbjct: 863 IE 864
>sp|Q80SY4|MIB1_MOUSE E3 ubiquitin-protein ligase MIB1 OS=Mus musculus GN=Mib1 PE=1 SV=1
Length = 1006
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267
+ECV+C + PC HMC C CA +++ +C CR VER
Sbjct: 864 EECVVCSDKKAAVLFQPCGHMCACENCASLMK----KCVQCRAVVER 906
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 17/62 (27%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 211 TVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE 270
++ +++++ +EC++C RDT PC H+ CS C+ + +C IC++ V+ +
Sbjct: 807 SMISNDSETLEECMVCSDMKRDTLFGPCGHIATCSLCSP----RVKKCLICKEQVQSRTK 862
Query: 271 IK 272
I+
Sbjct: 863 IE 864
>sp|Q804S5|MIB1_DANRE E3 ubiquitin-protein ligase mib1 OS=Danio rerio GN=mib1 PE=1 SV=1
Length = 1030
Score = 43.9 bits (102), Expect = 0.001, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267
+ECV+C + PC HMC C CA +++ +C CR VER
Sbjct: 862 EECVVCSDKKAAVLFQPCGHMCACENCASLMK----KCVQCRAVVER 904
Score = 40.8 bits (94), Expect = 0.010, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 272
+EC++C RDT PC H+ CS C+ + +C IC++ V+ +I+
Sbjct: 815 EECMVCSDMKRDTLFGPCGHIATCSLCSP----RVKKCLICKEQVQSRTKIE 862
>sp|Q6ZSG1|RN165_HUMAN RING finger protein 165 OS=Homo sapiens GN=RNF165 PE=1 SV=1
Length = 346
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 207 GIGSTVAGDETDSGKECVICLS---EPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQ 263
G G G+E+D+ ++C ICLS + D LPC H+ C + +CPICR
Sbjct: 278 GKGKKDEGEESDTDEKCTICLSMLEDGEDVRRLPCMHL-FHQLCVDQWLAMSKKCPICRV 336
Query: 264 PVERLL 269
+E L
Sbjct: 337 DIETQL 342
>sp|C0HBT3|RN146_SALSA E3 ubiquitin-protein ligase rnf146 OS=Salmo salar GN=rnf146 PE=2
SV=1
Length = 349
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPV-ERLLE 270
EC ICL LPCRH+ C C K +Q+ RC +CRQ V E LE
Sbjct: 40 ECAICLQSCVHPVQLPCRHV-FCFLCVKGASWQSKRCALCRQEVPEDFLE 88
>sp|Q5NVC7|RNF34_PONAB E3 ubiquitin-protein ligase RNF34 OS=Pongo abelii GN=RNF34 PE=2
SV=2
Length = 372
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 195 VNRV---RYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVL 251
VNR+ E Q+ YG + +E DS C IC+ D +L C HM C++C K
Sbjct: 296 VNRLYKENEENQKSYGERLQLQDEEDDS--LCRICMDAVIDCVLLECGHMVTCTKCGK-- 351
Query: 252 QFQTNRCPICRQPVERLLEI 271
+ + CPICRQ V R + +
Sbjct: 352 --RMSECPICRQYVVRAVHV 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,571,255
Number of Sequences: 539616
Number of extensions: 6120108
Number of successful extensions: 54110
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 1116
Number of HSP's that attempted gapping in prelim test: 37086
Number of HSP's gapped (non-prelim): 9161
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)