Query 023674
Match_columns 279
No_of_seqs 358 out of 1674
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 05:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023674.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023674hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4265 Predicted E3 ubiquitin 100.0 7.4E-52 1.6E-56 379.6 15.8 275 1-278 1-348 (349)
2 KOG1785 Tyrosine kinase negati 99.7 3.4E-18 7.4E-23 158.9 3.1 151 108-274 271-424 (563)
3 KOG4172 Predicted E3 ubiquitin 99.4 8.5E-15 1.8E-19 100.1 -1.6 53 220-272 7-60 (62)
4 PF13920 zf-C3HC4_3: Zinc fing 99.4 9.7E-14 2.1E-18 95.0 3.1 49 220-268 2-50 (50)
5 KOG0317 Predicted E3 ubiquitin 99.0 2.4E-10 5.1E-15 103.3 3.8 53 218-271 237-289 (293)
6 KOG4275 Predicted E3 ubiquitin 98.9 1.3E-10 2.8E-15 104.9 -0.2 50 219-272 299-348 (350)
7 PF13639 zf-RING_2: Ring finge 98.9 3.8E-10 8.3E-15 75.0 1.7 40 222-262 2-44 (44)
8 PLN03208 E3 ubiquitin-protein 98.9 1E-09 2.3E-14 94.7 4.8 54 218-272 16-87 (193)
9 PHA02929 N1R/p28-like protein; 98.9 1.1E-09 2.4E-14 98.0 4.8 55 218-273 172-234 (238)
10 KOG0823 Predicted E3 ubiquitin 98.9 2E-09 4.4E-14 94.7 5.3 57 217-274 44-105 (230)
11 PF13923 zf-C3HC4_2: Zinc fing 98.8 2.3E-09 4.9E-14 69.5 2.4 38 223-261 1-39 (39)
12 KOG1571 Predicted E3 ubiquitin 98.7 3.4E-09 7.4E-14 98.6 1.0 52 218-273 303-354 (355)
13 KOG0320 Predicted E3 ubiquitin 98.6 2.4E-08 5.2E-13 84.7 3.6 54 218-272 129-186 (187)
14 cd00162 RING RING-finger (Real 98.6 3.5E-08 7.6E-13 64.2 3.6 43 222-265 1-45 (45)
15 PF15227 zf-C3HC4_4: zinc fing 98.6 3.9E-08 8.5E-13 64.9 2.9 38 223-261 1-42 (42)
16 PHA02926 zinc finger-like prot 98.6 3.2E-08 7E-13 86.8 2.9 51 218-269 168-233 (242)
17 smart00184 RING Ring finger. E 98.5 1.1E-07 2.5E-12 59.6 3.4 38 223-261 1-39 (39)
18 PF14634 zf-RING_5: zinc-RING 98.5 8.1E-08 1.7E-12 63.9 2.7 41 222-263 1-44 (44)
19 KOG4628 Predicted E3 ubiquitin 98.5 6.7E-08 1.5E-12 90.5 3.1 49 221-270 230-282 (348)
20 PF00097 zf-C3HC4: Zinc finger 98.5 8.3E-08 1.8E-12 62.5 2.4 38 223-261 1-41 (41)
21 COG5243 HRD1 HRD ubiquitin lig 98.4 8.5E-08 1.8E-12 89.5 2.3 49 217-266 284-345 (491)
22 smart00504 Ubox Modified RING 98.4 2.6E-07 5.7E-12 65.5 4.0 46 221-267 2-47 (63)
23 PF12678 zf-rbx1: RING-H2 zinc 98.4 2E-07 4.4E-12 68.8 3.5 40 222-262 21-73 (73)
24 KOG1924 RhoA GTPase effector D 98.4 5.3E-07 1.2E-11 90.8 7.5 16 91-106 615-630 (1102)
25 TIGR00599 rad18 DNA repair pro 98.4 1.8E-07 3.8E-12 89.6 3.1 49 218-267 24-72 (397)
26 COG5540 RING-finger-containing 98.3 3E-07 6.4E-12 83.9 3.3 48 218-266 321-372 (374)
27 COG5574 PEX10 RING-finger-cont 98.3 3.2E-07 7E-12 82.3 2.4 48 218-266 213-262 (271)
28 KOG1100 Predicted E3 ubiquitin 98.3 1.9E-07 4.2E-12 82.2 0.9 47 222-272 160-206 (207)
29 KOG2164 Predicted E3 ubiquitin 98.2 7.4E-07 1.6E-11 86.4 3.4 55 220-275 186-247 (513)
30 PF13445 zf-RING_UBOX: RING-ty 98.1 1.2E-06 2.5E-11 58.2 2.1 31 223-255 1-35 (43)
31 COG5236 Uncharacterized conser 98.1 4E-06 8.7E-11 77.8 6.0 63 208-271 49-113 (493)
32 KOG0802 E3 ubiquitin ligase [P 98.1 1.5E-06 3.2E-11 86.9 1.8 48 218-266 289-341 (543)
33 KOG2177 Predicted E3 ubiquitin 97.9 3.6E-06 7.7E-11 75.1 1.4 45 218-263 11-55 (386)
34 KOG0287 Postreplication repair 97.9 3.1E-06 6.6E-11 78.4 0.9 49 218-267 21-69 (442)
35 PF02762 Cbl_N3: CBL proto-onc 97.9 2.8E-06 6E-11 62.6 0.2 69 108-181 17-85 (86)
36 PF04564 U-box: U-box domain; 97.9 1E-05 2.2E-10 59.6 2.9 48 219-267 3-51 (73)
37 COG5432 RAD18 RING-finger-cont 97.9 5.3E-06 1.1E-10 75.4 1.4 49 218-267 23-71 (391)
38 KOG0978 E3 ubiquitin ligase in 97.8 4.6E-06 9.9E-11 84.4 0.3 54 218-272 641-697 (698)
39 KOG4692 Predicted E3 ubiquitin 97.8 1.3E-05 2.9E-10 74.6 3.1 49 218-267 420-468 (489)
40 KOG0824 Predicted E3 ubiquitin 97.7 1.1E-05 2.4E-10 73.7 1.5 51 219-270 6-57 (324)
41 KOG1039 Predicted E3 ubiquitin 97.7 1.6E-05 3.4E-10 75.0 2.3 57 218-275 159-232 (344)
42 TIGR00570 cdk7 CDK-activating 97.7 2.9E-05 6.3E-10 71.9 3.7 47 220-267 3-55 (309)
43 KOG0311 Predicted E3 ubiquitin 97.6 4.7E-06 1E-10 77.6 -2.6 59 218-277 41-101 (381)
44 PF12861 zf-Apc11: Anaphase-pr 97.5 9E-05 2E-09 56.1 3.2 46 220-266 21-82 (85)
45 KOG4159 Predicted E3 ubiquitin 97.4 9E-05 1.9E-09 71.2 3.2 49 218-267 82-130 (398)
46 KOG0828 Predicted E3 ubiquitin 97.3 9.4E-05 2E-09 71.7 2.1 49 218-267 569-635 (636)
47 PF14447 Prok-RING_4: Prokaryo 97.3 8.2E-05 1.8E-09 51.5 1.0 46 219-267 6-51 (55)
48 KOG0804 Cytoplasmic Zn-finger 97.3 0.00019 4.2E-09 68.9 3.7 46 218-266 173-222 (493)
49 smart00744 RINGv The RING-vari 97.1 0.00046 1E-08 47.0 2.7 40 222-262 1-49 (49)
50 COG5152 Uncharacterized conser 97.1 0.00028 6E-09 61.2 1.9 52 219-271 195-246 (259)
51 PF14835 zf-RING_6: zf-RING of 96.9 0.00016 3.4E-09 51.8 -1.0 43 220-265 7-50 (65)
52 KOG1813 Predicted E3 ubiquitin 96.8 0.00046 1E-08 63.1 1.0 50 220-270 241-290 (313)
53 KOG0825 PHD Zn-finger protein 96.5 0.00063 1.4E-08 69.2 0.1 52 219-271 122-176 (1134)
54 KOG2879 Predicted E3 ubiquitin 96.2 0.0049 1.1E-07 56.0 3.8 51 218-269 237-290 (298)
55 KOG0297 TNF receptor-associate 96.1 0.0022 4.7E-08 61.9 1.3 53 218-271 19-72 (391)
56 KOG1814 Predicted E3 ubiquitin 96.1 0.0073 1.6E-07 57.7 4.6 33 218-251 182-217 (445)
57 PF14570 zf-RING_4: RING/Ubox 95.9 0.0045 9.7E-08 41.9 1.6 42 223-265 1-47 (48)
58 KOG4445 Uncharacterized conser 95.8 0.0031 6.8E-08 57.9 0.9 48 219-267 114-187 (368)
59 COG5219 Uncharacterized conser 95.7 0.0053 1.1E-07 63.9 2.0 48 218-266 1467-1523(1525)
60 PF04641 Rtf2: Rtf2 RING-finge 95.7 0.012 2.6E-07 53.7 4.0 56 218-275 111-170 (260)
61 KOG1734 Predicted RING-contain 95.7 0.0037 8.1E-08 56.7 0.6 49 218-267 222-282 (328)
62 PF11793 FANCL_C: FANCL C-term 95.4 0.0033 7.2E-08 45.9 -0.4 46 220-266 2-66 (70)
63 KOG0827 Predicted E3 ubiquitin 95.4 0.0088 1.9E-07 56.8 2.1 46 221-268 5-58 (465)
64 KOG4367 Predicted Zn-finger pr 95.3 0.009 2E-07 57.5 1.9 36 218-254 2-37 (699)
65 PF05883 Baculo_RING: Baculovi 95.0 0.02 4.4E-07 46.9 2.8 50 220-275 26-84 (134)
66 KOG2660 Locus-specific chromos 94.9 0.0071 1.5E-07 56.3 -0.1 50 218-268 13-63 (331)
67 COG5194 APC11 Component of SCF 94.8 0.029 6.2E-07 41.9 3.0 32 234-266 50-81 (88)
68 PF07800 DUF1644: Protein of u 94.6 0.05 1.1E-06 45.8 4.3 52 220-271 2-96 (162)
69 KOG4185 Predicted E3 ubiquitin 94.5 0.024 5.3E-07 52.2 2.4 45 220-265 3-54 (296)
70 KOG3039 Uncharacterized conser 94.4 0.045 9.8E-07 49.2 3.8 53 218-271 219-275 (303)
71 KOG1002 Nucleotide excision re 94.3 0.019 4.1E-07 56.6 1.3 49 217-266 533-586 (791)
72 PHA02825 LAP/PHD finger-like p 94.1 0.052 1.1E-06 45.8 3.4 48 218-266 6-59 (162)
73 PF05290 Baculo_IE-1: Baculovi 94.1 0.03 6.5E-07 45.8 1.9 50 218-268 78-134 (140)
74 KOG4739 Uncharacterized protei 94.0 0.02 4.2E-07 51.3 0.7 42 222-266 5-48 (233)
75 PF03854 zf-P11: P-11 zinc fin 94.0 0.024 5.3E-07 38.1 1.0 44 222-267 4-47 (50)
76 KOG1001 Helicase-like transcri 93.9 0.023 5E-07 58.4 1.1 45 221-267 455-501 (674)
77 KOG1428 Inhibitor of type V ad 93.4 0.043 9.4E-07 59.7 2.1 50 218-268 3484-3546(3738)
78 COG5175 MOT2 Transcriptional r 92.8 0.061 1.3E-06 50.5 2.0 47 220-267 14-65 (480)
79 KOG2930 SCF ubiquitin ligase, 92.8 0.069 1.5E-06 41.8 2.0 29 235-264 78-106 (114)
80 KOG0826 Predicted E3 ubiquitin 92.7 0.099 2.1E-06 48.8 3.1 53 218-271 298-353 (357)
81 KOG3002 Zn finger protein [Gen 92.6 0.079 1.7E-06 49.3 2.4 46 218-268 46-93 (299)
82 KOG2113 Predicted RNA binding 92.5 0.1 2.2E-06 48.5 3.0 52 218-271 341-392 (394)
83 KOG1645 RING-finger-containing 92.3 0.1 2.3E-06 50.0 2.8 45 219-264 3-54 (463)
84 PF10272 Tmpp129: Putative tra 92.2 0.17 3.8E-06 48.2 4.2 48 218-266 269-351 (358)
85 PHA02862 5L protein; Provision 91.9 0.13 2.8E-06 42.7 2.6 46 220-266 2-53 (156)
86 KOG2932 E3 ubiquitin ligase in 91.4 0.049 1.1E-06 50.5 -0.4 49 220-271 90-139 (389)
87 PHA03096 p28-like protein; Pro 91.4 0.11 2.4E-06 48.0 1.9 42 221-263 179-231 (284)
88 KOG1493 Anaphase-promoting com 90.0 0.086 1.9E-06 39.1 -0.1 29 237-266 50-81 (84)
89 PF12906 RINGv: RING-variant d 89.5 0.19 4.1E-06 33.7 1.2 39 223-261 1-47 (47)
90 KOG3800 Predicted E3 ubiquitin 89.0 0.33 7.1E-06 44.7 2.8 29 236-265 21-50 (300)
91 COG5222 Uncharacterized conser 88.9 0.2 4.3E-06 46.4 1.3 43 220-263 274-318 (427)
92 KOG1941 Acetylcholine receptor 88.8 0.095 2.1E-06 50.0 -0.8 48 218-266 363-416 (518)
93 PF11789 zf-Nse: Zinc-finger o 88.8 0.28 6E-06 34.4 1.7 42 218-260 9-53 (57)
94 COG5220 TFB3 Cdk activating ki 88.7 0.15 3.2E-06 45.8 0.3 46 218-264 8-62 (314)
95 PF10367 Vps39_2: Vacuolar sor 88.1 0.21 4.5E-06 38.5 0.8 31 218-249 76-108 (109)
96 KOG3842 Adaptor protein Pellin 87.1 0.51 1.1E-05 44.0 2.9 48 218-267 339-415 (429)
97 KOG3671 Actin regulatory prote 86.9 2.8 6E-05 41.5 7.8 6 2-7 349-354 (569)
98 KOG3579 Predicted E3 ubiquitin 85.9 0.34 7.4E-06 44.5 1.0 34 219-253 267-304 (352)
99 KOG2113 Predicted RNA binding 85.2 0.22 4.8E-06 46.3 -0.5 54 219-272 135-189 (394)
100 KOG3799 Rab3 effector RIM1 and 84.9 0.2 4.3E-06 41.1 -0.8 46 218-267 63-119 (169)
101 KOG3053 Uncharacterized conser 83.6 0.66 1.4E-05 42.1 1.8 48 218-265 18-81 (293)
102 COG5183 SSM4 Protein involved 83.1 1 2.2E-05 46.9 3.1 49 218-266 10-66 (1175)
103 KOG3970 Predicted E3 ubiquitin 81.9 1.3 2.9E-05 39.5 3.0 47 220-267 50-106 (299)
104 PF04710 Pellino: Pellino; In 80.4 0.53 1.1E-05 45.2 0.0 54 219-273 327-411 (416)
105 KOG0825 PHD Zn-finger protein 80.1 0.76 1.6E-05 47.7 1.0 52 218-270 97-158 (1134)
106 KOG1952 Transcription factor N 78.5 1.4 3E-05 46.1 2.3 46 218-264 189-245 (950)
107 KOG4672 Uncharacterized conser 76.6 13 0.00027 36.2 7.9 13 124-136 429-441 (487)
108 KOG0298 DEAD box-containing he 75.2 0.79 1.7E-05 49.9 -0.5 48 218-266 1151-1199(1394)
109 PLN02189 cellulose synthase 73.1 2.8 6E-05 45.1 2.9 48 219-267 33-88 (1040)
110 KOG4362 Transcriptional regula 72.6 0.85 1.8E-05 46.8 -1.0 46 220-266 21-69 (684)
111 KOG1830 Wiskott Aldrich syndro 71.0 37 0.00081 33.2 9.6 10 177-186 466-475 (518)
112 KOG1940 Zn-finger protein [Gen 71.0 2.7 5.9E-05 38.7 2.0 45 221-267 159-207 (276)
113 KOG2114 Vacuolar assembly/sort 70.4 1.6 3.4E-05 45.7 0.3 45 221-269 841-886 (933)
114 PF04216 FdhE: Protein involve 68.0 1.3 2.8E-05 40.9 -0.8 54 218-272 170-228 (290)
115 KOG3161 Predicted E3 ubiquitin 67.6 1.7 3.7E-05 44.3 -0.1 38 219-259 10-51 (861)
116 KOG2817 Predicted E3 ubiquitin 63.9 6.2 0.00014 38.0 2.9 46 219-265 333-384 (394)
117 KOG3113 Uncharacterized conser 63.6 6.4 0.00014 35.8 2.8 56 218-276 109-168 (293)
118 KOG0801 Predicted E3 ubiquitin 62.8 3.2 6.9E-05 35.3 0.7 24 218-241 175-201 (205)
119 KOG0269 WD40 repeat-containing 61.9 7.2 0.00016 40.6 3.1 40 220-260 779-820 (839)
120 KOG2068 MOT2 transcription fac 61.3 5.9 0.00013 37.3 2.2 46 221-267 250-299 (327)
121 KOG3899 Uncharacterized conser 60.5 4.7 0.0001 37.4 1.4 28 238-266 325-365 (381)
122 PF14569 zf-UDP: Zinc-binding 59.7 6.8 0.00015 29.2 1.9 48 219-267 8-63 (80)
123 COG5178 PRP8 U5 snRNP spliceos 59.7 8.1 0.00018 42.2 3.1 11 129-139 155-165 (2365)
124 PF08746 zf-RING-like: RING-li 59.5 10 0.00022 24.8 2.5 38 223-261 1-43 (43)
125 PF02891 zf-MIZ: MIZ/SP-RING z 57.7 10 0.00022 25.6 2.4 43 221-264 3-50 (50)
126 KOG1812 Predicted E3 ubiquitin 57.1 3.6 7.7E-05 39.7 0.0 32 219-251 145-180 (384)
127 PRK03564 formate dehydrogenase 56.4 8.8 0.00019 36.0 2.5 45 218-263 185-234 (309)
128 KOG0309 Conserved WD40 repeat- 56.2 6.7 0.00015 40.9 1.8 39 221-260 1029-1069(1081)
129 TIGR01562 FdhE formate dehydro 55.0 9 0.0002 35.9 2.3 46 218-264 182-233 (305)
130 KOG3268 Predicted E3 ubiquitin 53.8 9.4 0.0002 33.0 2.0 47 219-266 164-228 (234)
131 KOG1830 Wiskott Aldrich syndro 51.3 88 0.0019 30.7 8.3 6 15-20 305-310 (518)
132 KOG2034 Vacuolar sorting prote 50.1 8.7 0.00019 40.6 1.5 32 218-250 815-848 (911)
133 KOG1609 Protein involved in mR 48.5 14 0.00031 33.7 2.6 49 219-267 77-135 (323)
134 KOG1815 Predicted E3 ubiquitin 47.8 11 0.00024 37.0 1.8 49 218-267 68-127 (444)
135 KOG4185 Predicted E3 ubiquitin 45.2 2.8 6.2E-05 38.4 -2.6 45 219-264 206-265 (296)
136 PF06906 DUF1272: Protein of u 44.9 20 0.00043 25.1 2.1 22 243-266 31-52 (57)
137 COG5178 PRP8 U5 snRNP spliceos 44.4 20 0.00043 39.5 3.0 6 131-136 147-152 (2365)
138 KOG3039 Uncharacterized conser 43.8 17 0.00038 33.0 2.2 32 218-250 41-72 (303)
139 PF10764 Gin: Inhibitor of sig 41.8 21 0.00045 23.9 1.8 30 222-253 1-30 (46)
140 PF07975 C1_4: TFIIH C1-like d 40.6 15 0.00032 25.2 1.0 25 237-262 26-50 (51)
141 COG4306 Uncharacterized protei 40.2 15 0.00033 29.9 1.2 26 243-271 30-55 (160)
142 PLN02400 cellulose synthase 39.8 18 0.0004 39.3 2.0 50 218-268 34-91 (1085)
143 PLN02638 cellulose synthase A 38.3 26 0.00056 38.2 2.9 55 219-274 16-81 (1079)
144 KOG0132 RNA polymerase II C-te 38.3 1.4E+02 0.003 31.7 7.8 6 203-208 786-791 (894)
145 PF10235 Cript: Microtubule-as 38.1 20 0.00043 27.5 1.5 38 220-267 44-81 (90)
146 COG3813 Uncharacterized protei 36.6 25 0.00053 25.9 1.7 24 240-266 29-52 (84)
147 PF13240 zinc_ribbon_2: zinc-r 36.2 5.6 0.00012 22.5 -1.4 21 244-264 2-22 (23)
148 PF04423 Rad50_zn_hook: Rad50 34.6 13 0.00029 25.2 0.0 12 256-267 21-32 (54)
149 TIGR00622 ssl1 transcription f 33.2 30 0.00064 27.7 1.8 41 221-262 56-110 (112)
150 PF06937 EURL: EURL protein; 33.2 36 0.00078 31.3 2.5 16 244-259 58-74 (285)
151 PLN02436 cellulose synthase A 32.4 35 0.00077 37.2 2.7 48 219-267 35-90 (1094)
152 KOG0824 Predicted E3 ubiquitin 32.2 15 0.00033 34.2 0.0 50 218-268 103-153 (324)
153 PF10571 UPF0547: Uncharacteri 31.3 12 0.00026 21.9 -0.6 22 244-265 3-24 (26)
154 PF10083 DUF2321: Uncharacteri 31.2 27 0.00059 29.5 1.4 26 243-271 30-55 (158)
155 PF07191 zinc-ribbons_6: zinc- 30.1 2.7 5.8E-05 30.8 -4.2 42 221-268 2-43 (70)
156 PLN02248 cellulose synthase-li 29.8 61 0.0013 35.6 4.0 30 235-265 145-176 (1135)
157 cd05711 Ig_FcalphaRI Immunoglo 29.1 1.7E+02 0.0037 21.7 5.4 57 84-140 8-74 (94)
158 KOG2231 Predicted E3 ubiquitin 28.8 9.2 0.0002 39.5 -2.2 48 218-267 76-126 (669)
159 KOG0006 E3 ubiquitin-protein l 28.6 36 0.00077 32.2 1.8 31 219-250 220-252 (446)
160 COG4357 Zinc finger domain con 28.3 39 0.00086 26.3 1.7 26 243-268 64-93 (105)
161 KOG1812 Predicted E3 ubiquitin 28.1 35 0.00076 32.9 1.7 42 219-261 305-351 (384)
162 KOG4718 Non-SMC (structural ma 27.0 2.4 5.1E-05 37.5 -5.8 46 218-264 179-225 (235)
163 KOG2807 RNA polymerase II tran 26.5 41 0.00089 31.9 1.8 43 220-263 330-375 (378)
164 KOG4218 Nuclear hormone recept 25.0 51 0.0011 31.5 2.1 27 218-248 13-39 (475)
165 PHA03211 serine/threonine kina 24.7 90 0.002 30.7 4.0 14 118-131 170-183 (461)
166 KOG2169 Zn-finger transcriptio 23.5 1E+02 0.0022 31.9 4.1 43 218-265 304-355 (636)
167 PF06844 DUF1244: Protein of u 23.1 46 0.001 24.0 1.2 12 242-253 11-22 (68)
168 KOG1829 Uncharacterized conser 22.5 31 0.00067 35.2 0.2 42 218-263 509-558 (580)
169 PF10813 DUF2733: Protein of u 21.9 39 0.00085 20.9 0.5 12 1-12 1-13 (32)
170 KOG0802 E3 ubiquitin ligase [P 21.9 40 0.00086 34.0 0.9 46 218-268 477-522 (543)
171 COG3058 FdhE Uncharacterized p 21.4 76 0.0016 29.5 2.5 63 199-263 165-233 (308)
172 KOG4590 Signal transduction pr 20.3 2.8E+02 0.0061 27.2 6.2 7 258-264 398-404 (409)
173 PF12773 DZR: Double zinc ribb 20.3 52 0.0011 21.5 0.9 25 243-267 14-41 (50)
No 1
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-52 Score=379.63 Aligned_cols=275 Identities=48% Similarity=0.793 Sum_probs=213.5
Q ss_pred CCCCCCCC----CCCCCCCCCCCC-CCCCCCCcccc-ccCCCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCCC---CC
Q 023674 1 MGNSGSHR----RHHSNIPPPTPP-PTTRQTQSQYV-FAAATPYPSQYPNQYYPLYPG-YYPPPVPVH--GAYGY---HH 68 (279)
Q Consensus 1 ~~~~~s~~----~~~~~~~ppppp-p~p~~~~~~~~-~~~~~p~p~p~p~~~~~~~~~-~~ppppp~p--~p~~~---~~ 68 (279)
|||+.|.+ +|+..++.+|+. ..++++++.++ |..+.||+++.+. .+-.+.+ +.++.-..| .||+. +|
T Consensus 1 MG~v~s~~~~~~~~~~~~~~~p~~~~~~p~~~n~~~~F~~~~p~~~~~~~-~~l~~~~~~~~~~~~rp~~~Py~~~~~~h 79 (349)
T KOG4265|consen 1 MGNVLSRGFNGVSRLLSHANVPPAYYTPPPSGNYFGHFGMGGPYDNPNPE-EYLFYLNNLLPFLGSRPVLFPYYFTPLSH 79 (349)
T ss_pred CceeeecccccccccccccCCCcccccCCCCCCeeeeEeccCCCCCCChh-hhcccccccccccccccccCCCCCCCccc
Confidence 99999972 333333322111 11223356666 7777788888776 2223333 222111111 11221 11
Q ss_pred CCCCCCCC-CC-----C--CCCCCCCccccccccccccceeecCCceeEEeCCCCCCeeEEEEEecCCCCccEEEEEeee
Q 023674 69 MPSGHYPA-HP-----P--PPPPPPQYMEHQKAVTIRNDVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFGK 140 (279)
Q Consensus 69 ~~p~~~~~-~~-----~--~~~~~~~~~~~q~t~~irn~VNi~K~Slrl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~ 140 (279)
.+..+.-- +. . ...++-+++ ||+++|||||||++|++++++.|..+++.|+|+|+|||+..|.|+|+||||
T Consensus 80 ~~~~~~~~l~~~r~~s~~~~~~~~~~~~-~~~av~i~~d~~l~k~~~~l~~d~~~P~~~~~sf~fda~~~g~itV~~fak 158 (349)
T KOG4265|consen 80 APIRPLIDLVNYRKPSLLLVCAPPDQYL-HQKAVTIRNDVNLDKETLRLDPDPLTPGLLLLSFTFDALAQGAITVLFFAK 158 (349)
T ss_pred ccccchhhcccccccccceEecCCCccc-cccceeccchhhcccceEEeccCCCCcceeEEEEEeccccCccEEEEEecc
Confidence 11111110 00 0 123455688 999999999999999999999998899999999999999999999999999
Q ss_pred ecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCChhhhHh---------------------------------
Q 023674 141 EDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIA--------------------------------- 187 (279)
Q Consensus 141 E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~~~~~~e--------------------------------- 187 (279)
|+..++++......+.++|++|.+|++|.|.+++ ++||++.|++++
T Consensus 159 E~~~c~~~~~~~~~~~~~t~~f~~gl~Q~F~q~s-~~~D~~~~~~~~L~~~~~~~vyplsi~~~~~~~~~~~~~~~~~~~ 237 (349)
T KOG4265|consen 159 EEVLCGLVLLVPDELPSITVHFEKGLGQLFLQPS-TGIDFSVMSIDDLSLSLDRRVYPLSISAEVQPSDVVESMGVFHVI 237 (349)
T ss_pred ccccccccccccccCCCeeEEcccchhhhhcCCc-cccchhhcchhhhcccccCCeeeEEEEEEEeccccccccceeeEE
Confidence 9999999998888899999999999999999999 899999988776
Q ss_pred ----------------hhhhheeeccchhhhhhhhcCCCCCCCCCC----CCCccccccccCCCccEEecCCCcccCHHH
Q 023674 188 ----------------LTKQILWVNRVRYELQEIYGIGSTVAGDET----DSGKECVICLSEPRDTTVLPCRHMCMCSEC 247 (279)
Q Consensus 188 ----------------~lkq~i~~~~~~y~l~e~~~~~~s~~~~~~----~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C 247 (279)
++||++|+++..|+++|+||++++..++.+ +++++|||||++.+|+++|||||+|+|.+|
T Consensus 238 tq~v~~~~~~G~~~~~~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~C 317 (349)
T KOG4265|consen 238 TQAVYEKDEKGSIKIKVLKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGC 317 (349)
T ss_pred EeeeeccCcCCceeeeeeeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhH
Confidence 789999999999999999999976655433 678999999999999999999999999999
Q ss_pred HHHHHhcCCCCccccccccceEEEecCCCCC
Q 023674 248 AKVLQFQTNRCPICRQPVERLLEIKVNNAAD 278 (279)
Q Consensus 248 ~~~l~~~~~~CPiCR~~i~~~~~i~~~~~~~ 278 (279)
++.|+.+.++|||||+.|..+++|++++++.
T Consensus 318 a~~Lr~q~n~CPICRqpi~~ll~i~~~~~~~ 348 (349)
T KOG4265|consen 318 AKSLRYQTNNCPICRQPIEELLEIYVNKEDR 348 (349)
T ss_pred HHHHHHhhcCCCccccchHhhheeccccccC
Confidence 9999999999999999999999999998764
No 2
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=99.71 E-value=3.4e-18 Score=158.90 Aligned_cols=151 Identities=19% Similarity=0.448 Sum_probs=122.9
Q ss_pred eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCChhhhHh
Q 023674 108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFDEIA 187 (279)
Q Consensus 108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~~~~~~e 187 (279)
||.+...++|.|. |.++|++.|+|+|.|++.++...++++.++.++|..--.+..|. |.++.|...|.++-+..+
T Consensus 271 RLqk~~~KpGSYI--FRlSCTRlGQWAIGYVt~dG~IlQTIP~NKpL~QaL~eG~keGF---YlyPdGr~~npdLt~l~~ 345 (563)
T KOG1785|consen 271 RLQKYIKKPGSYI--FRLSCTRLGQWAIGYVTADGNILQTIPQNKPLFQALLEGHKEGF---YLYPDGRDQNPDLTGLCQ 345 (563)
T ss_pred HHHHHhcCCCceE--EeeccCcccceeEEEEcCCCceeeccCCCcHHHHHHHhccccce---EECCCCccCCCChhhccC
Confidence 4555557899999 99999999999999999999999999999998887333333343 678888876666555544
Q ss_pred h-hhhheeeccchhhhhhhhcCCCCCCCCCCCCCccccccccCCCccEEecCCCcccCHHHHHHHHhc--CCCCcccccc
Q 023674 188 L-TKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQP 264 (279)
Q Consensus 188 ~-lkq~i~~~~~~y~l~e~~~~~~s~~~~~~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~--~~~CPiCR~~ 264 (279)
. -.+.|.+....|+|.-.+| ....+|.||-++.+|+.+.||||+ +|..|+..|+.. +..||+||..
T Consensus 346 ~~p~d~i~VtqEQyeLYceMg----------sTFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcE 414 (563)
T KOG1785|consen 346 PPPQDRIKVTQEQYELYCEMG----------STFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCE 414 (563)
T ss_pred CCcccceeeeHHHHHHHHHcc----------chHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeE
Confidence 3 3677888888898887765 456799999999999999999999 999999999843 5789999999
Q ss_pred ccceEEEecC
Q 023674 265 VERLLEIKVN 274 (279)
Q Consensus 265 i~~~~~i~~~ 274 (279)
|.+.-.|.++
T Consensus 415 IKGte~viid 424 (563)
T KOG1785|consen 415 IKGTEPVIID 424 (563)
T ss_pred eccccceeee
Confidence 9987777654
No 3
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=8.5e-15 Score=100.13 Aligned_cols=53 Identities=38% Similarity=0.956 Sum_probs=47.5
Q ss_pred CccccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccccccccceEEEe
Q 023674 220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVERLLEIK 272 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~~~~i~ 272 (279)
+.||.||++.+.|.++.-|||||+|.+|..+++. .+..||+||++|..+++.+
T Consensus 7 ~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY 60 (62)
T KOG4172|consen 7 SDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY 60 (62)
T ss_pred ccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence 4799999999999999999999999999998665 5788999999999887654
No 4
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.42 E-value=9.7e-14 Score=95.04 Aligned_cols=49 Identities=51% Similarity=1.267 Sum_probs=43.9
Q ss_pred CccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
+.+|.||+++.++++++||||++||..|+.+|+....+||+||+.|+++
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 4689999999999999999999999999999998889999999998763
No 5
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.4e-10 Score=103.34 Aligned_cols=53 Identities=25% Similarity=0.725 Sum_probs=47.5
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i 271 (279)
+....|++|+++..+...+||||+ ||+.|+..|......||+||..+.-..-|
T Consensus 237 ~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi 289 (293)
T KOG0317|consen 237 EATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVI 289 (293)
T ss_pred CCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCccee
Confidence 566899999999999999999999 99999999999999999999988754433
No 6
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.3e-10 Score=104.89 Aligned_cols=50 Identities=44% Similarity=1.032 Sum_probs=46.3
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEe
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 272 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~ 272 (279)
...+|.|||+.++|.+||+|||+..|.+|-+.| +.|||||+.|..+.+|+
T Consensus 299 ~~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~rvvrif 348 (350)
T KOG4275|consen 299 TRRLCAICMDAPRDCVFLECGHMVTCTKCGKRM----NECPICRQYIVRVVRIF 348 (350)
T ss_pred HHHHHHHHhcCCcceEEeecCcEEeehhhcccc----ccCchHHHHHHHHHhhh
Confidence 378999999999999999999999999999987 49999999999988876
No 7
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.92 E-value=3.8e-10 Score=75.02 Aligned_cols=40 Identities=43% Similarity=0.936 Sum_probs=35.4
Q ss_pred cccccccCC---CccEEecCCCcccCHHHHHHHHhcCCCCcccc
Q 023674 222 ECVICLSEP---RDTTVLPCRHMCMCSECAKVLQFQTNRCPICR 262 (279)
Q Consensus 222 ~C~IC~~~~---~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR 262 (279)
+|.||++.. ..++.++|||. ||.+|+..|..++.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 799999876 35788899999 99999999999999999998
No 8
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.92 E-value=1e-09 Score=94.74 Aligned_cols=54 Identities=31% Similarity=0.802 Sum_probs=44.9
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc----------------CCCCccccccccc--eEEEe
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ----------------TNRCPICRQPVER--LLEIK 272 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~----------------~~~CPiCR~~i~~--~~~i~ 272 (279)
.+..+|.||++..++.++++|||. ||..|+..|... ..+||+||..|.. ++.|+
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 456899999999999999999999 999999998642 2479999999975 44443
No 9
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.91 E-value=1.1e-09 Score=97.98 Aligned_cols=55 Identities=31% Similarity=0.839 Sum_probs=46.0
Q ss_pred CCCccccccccCCCc--------cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 218 DSGKECVICLSEPRD--------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~--------~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
..+.+|.||++...+ .++.+|+|. ||.+|+..|..+..+||+||..+..+++.+.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~ 234 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRF 234 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence 346799999997554 356689999 9999999999988999999999988776543
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2e-09 Score=94.70 Aligned_cols=57 Identities=25% Similarity=0.583 Sum_probs=47.7
Q ss_pred CCCCccccccccCCCccEEecCCCcccCHHHHHHHHhc---CCCCccccccccc--eEEEecC
Q 023674 217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ---TNRCPICRQPVER--LLEIKVN 274 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~---~~~CPiCR~~i~~--~~~i~~~ 274 (279)
+....+|.||++..+|.++..|||+ ||+.|+.+|... +..||+|+..|.. ++-|+..
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr 105 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR 105 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence 3567899999999999999999999 999999999864 3569999998875 4555543
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.81 E-value=2.3e-09 Score=69.53 Aligned_cols=38 Identities=45% Similarity=1.089 Sum_probs=33.5
Q ss_pred ccccccCCCcc-EEecCCCcccCHHHHHHHHhcCCCCccc
Q 023674 223 CVICLSEPRDT-TVLPCRHMCMCSECAKVLQFQTNRCPIC 261 (279)
Q Consensus 223 C~IC~~~~~~~-~~lPCgH~~~C~~C~~~l~~~~~~CPiC 261 (279)
|.||++..++. ++++|||. ||.+|+.+|.....+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 88999999998 68999999 9999999998888889998
No 12
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.4e-09 Score=98.56 Aligned_cols=52 Identities=37% Similarity=0.947 Sum_probs=46.2
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
.....|+||++++.+++++||||+|.|..|.+.+. +||+||+.|...++++.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~----~CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP----QCPVCRQRIRLVRKRYR 354 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEEchHHHhhCC----CCchhHHHHHHHHHHhc
Confidence 55678999999999999999999999999999874 69999999988877653
No 13
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=2.4e-08 Score=84.67 Aligned_cols=54 Identities=31% Similarity=0.742 Sum_probs=44.0
Q ss_pred CCCccccccccCCCccE--EecCCCcccCHHHHHHHHhcCCCCccccccccc--eEEEe
Q 023674 218 DSGKECVICLSEPRDTT--VLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIK 272 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~--~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~--~~~i~ 272 (279)
+.-..|.|||+.....+ -.-|||+ ||..|++..+....+||+||..|.. +.+|+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 34468999999877654 3689999 9999999999999999999987765 45554
No 14
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.62 E-value=3.5e-08 Score=64.23 Aligned_cols=43 Identities=47% Similarity=1.108 Sum_probs=35.7
Q ss_pred cccccccCCCccEE-ecCCCcccCHHHHHHHHhc-CCCCccccccc
Q 023674 222 ECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQ-TNRCPICRQPV 265 (279)
Q Consensus 222 ~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i 265 (279)
+|.||++...+.+. .+|||. ||..|+..|..+ ...||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 59999999855544 459999 999999999877 67899999754
No 15
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.58 E-value=3.9e-08 Score=64.90 Aligned_cols=38 Identities=39% Similarity=0.906 Sum_probs=30.2
Q ss_pred ccccccCCCccEEecCCCcccCHHHHHHHHhcC----CCCccc
Q 023674 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT----NRCPIC 261 (279)
Q Consensus 223 C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~----~~CPiC 261 (279)
|.||++-+++.+.++|||. ||..|+.+|+... ..||+|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 8899999999999999999 9999999987653 359987
No 16
>PHA02926 zinc finger-like protein; Provisional
Probab=98.57 E-value=3.2e-08 Score=86.79 Aligned_cols=51 Identities=27% Similarity=0.671 Sum_probs=40.4
Q ss_pred CCCccccccccCCC---------ccEEecCCCcccCHHHHHHHHhcC------CCCccccccccceE
Q 023674 218 DSGKECVICLSEPR---------DTTVLPCRHMCMCSECAKVLQFQT------NRCPICRQPVERLL 269 (279)
Q Consensus 218 ~~~~~C~IC~~~~~---------~~~~lPCgH~~~C~~C~~~l~~~~------~~CPiCR~~i~~~~ 269 (279)
..+.+|.|||+... -.++.+|+|. ||..|+..|+... ..||+||..+..+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 45689999998631 2467799999 9999999999742 45999999877544
No 17
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.50 E-value=1.1e-07 Score=59.62 Aligned_cols=38 Identities=47% Similarity=1.104 Sum_probs=34.3
Q ss_pred ccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccc
Q 023674 223 CVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPIC 261 (279)
Q Consensus 223 C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiC 261 (279)
|.||++..++.++++|||. ||..|++.|.. ...+||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999999887 45679987
No 18
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.50 E-value=8.1e-08 Score=63.90 Aligned_cols=41 Identities=37% Similarity=0.980 Sum_probs=34.9
Q ss_pred cccccccCC---CccEEecCCCcccCHHHHHHHHhcCCCCccccc
Q 023674 222 ECVICLSEP---RDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQ 263 (279)
Q Consensus 222 ~C~IC~~~~---~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~ 263 (279)
+|.||++.. +...++.|||. ||..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 488999887 34788999999 999999998755678999985
No 19
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=6.7e-08 Score=90.52 Aligned_cols=49 Identities=29% Similarity=0.716 Sum_probs=41.8
Q ss_pred ccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCCC-CccccccccceEE
Q 023674 221 KECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNR-CPICRQPVERLLE 270 (279)
Q Consensus 221 ~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~~-CPiCR~~i~~~~~ 270 (279)
..|+||+|.++. ..+|||.|. |+..|++.|..+..+ ||+|++.+..-..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~~~ 282 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTDSG 282 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence 599999998875 678999999 999999999988755 9999997765443
No 20
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.48 E-value=8.3e-08 Score=62.51 Aligned_cols=38 Identities=37% Similarity=0.998 Sum_probs=34.1
Q ss_pred ccccccCCCccE-EecCCCcccCHHHHHHHHh--cCCCCccc
Q 023674 223 CVICLSEPRDTT-VLPCRHMCMCSECAKVLQF--QTNRCPIC 261 (279)
Q Consensus 223 C~IC~~~~~~~~-~lPCgH~~~C~~C~~~l~~--~~~~CPiC 261 (279)
|.||++...+.+ +++|||. ||..|+.+|+. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 889999999988 9999999 99999999887 45679988
No 21
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.5e-08 Score=89.47 Aligned_cols=49 Identities=39% Similarity=0.837 Sum_probs=41.5
Q ss_pred CCCCccccccccCCCc-------------cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 217 TDSGKECVICLSEPRD-------------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~-------------~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
..++..|.|||++... ..-|||||. ++..|++.|..+..+|||||.++.
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~i 345 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPVI 345 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCccc
Confidence 4677899999998322 256899999 999999999999999999999853
No 22
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.42 E-value=2.6e-07 Score=65.46 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=42.1
Q ss_pred ccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 221 ~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
..|.||++...+.++++|||. ||..|+..|.....+||+|+..+..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 579999999999999999999 9999999998878899999998843
No 23
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.42 E-value=2e-07 Score=68.82 Aligned_cols=40 Identities=33% Similarity=0.737 Sum_probs=33.4
Q ss_pred cccccccCCC-------------ccEEecCCCcccCHHHHHHHHhcCCCCcccc
Q 023674 222 ECVICLSEPR-------------DTTVLPCRHMCMCSECAKVLQFQTNRCPICR 262 (279)
Q Consensus 222 ~C~IC~~~~~-------------~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR 262 (279)
.|.||++... .+++..|||. |+..|+..|....++||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 4999998772 2456689999 99999999999999999998
No 24
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.42 E-value=5.3e-07 Score=90.79 Aligned_cols=16 Identities=6% Similarity=0.183 Sum_probs=9.7
Q ss_pred ccccccccceeecCCc
Q 023674 91 QKAVTIRNDVNVKKET 106 (279)
Q Consensus 91 q~t~~irn~VNi~K~S 106 (279)
...+..+-.|-+||--
T Consensus 615 kpKK~~k~e~~Mrr~n 630 (1102)
T KOG1924|consen 615 KPKKVYKPEVPMRRFN 630 (1102)
T ss_pred CccccCCCCCccccCC
Confidence 3345666677777643
No 25
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=1.8e-07 Score=89.58 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=44.2
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
+....|.||++...+.++++|||. ||..|+..|......||+||..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 456799999999999999999999 9999999988777789999998764
No 26
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=3e-07 Score=83.90 Aligned_cols=48 Identities=38% Similarity=0.873 Sum_probs=41.0
Q ss_pred CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHh-cCCCCcccccccc
Q 023674 218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~ 266 (279)
+.+-+|+|||+++.. .+++||.|. |+..|+..|.. -+++||+||.+|-
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 456899999987643 688999999 99999999987 4689999999863
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=3.2e-07 Score=82.27 Aligned_cols=48 Identities=31% Similarity=0.804 Sum_probs=42.2
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHH-HHhcCC-CCcccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKV-LQFQTN-RCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~-l~~~~~-~CPiCR~~i~ 266 (279)
..+.+|.||++...+...++|||+ ||..|+.. |..+.. .||+||+.+.
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhcc
Confidence 457889999999999999999999 99999998 877654 4999999764
No 28
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.9e-07 Score=82.20 Aligned_cols=47 Identities=38% Similarity=0.995 Sum_probs=42.1
Q ss_pred cccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEe
Q 023674 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 272 (279)
Q Consensus 222 ~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~ 272 (279)
.|.+|.++...++++||+|+|+|..|...+ ..||+|+..+.+.+.++
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v~ 206 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEVN 206 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeecc
Confidence 399999999999999999999999998864 47999999998887764
No 29
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=7.4e-07 Score=86.41 Aligned_cols=55 Identities=29% Similarity=0.695 Sum_probs=46.3
Q ss_pred CccccccccCCCccEEecCCCcccCHHHHHHHHhcC-----CCCccccccccc--eEEEecCC
Q 023674 220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-----NRCPICRQPVER--LLEIKVNN 275 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-----~~CPiCR~~i~~--~~~i~~~~ 275 (279)
+..|.||++...-++.+-|||. ||..|+...+... ..||+||..|.. +.-|.+.+
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~ 247 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIED 247 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecc
Confidence 6789999999999999999999 9999999855432 579999999987 77766644
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.15 E-value=1.2e-06 Score=58.17 Aligned_cols=31 Identities=35% Similarity=0.879 Sum_probs=20.8
Q ss_pred ccccccCCCc----cEEecCCCcccCHHHHHHHHhcC
Q 023674 223 CVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQT 255 (279)
Q Consensus 223 C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~ 255 (279)
|.||++ +.+ .++|+|||. ||.+|++.|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~ 35 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKS 35 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcC
Confidence 889999 766 788999999 9999999988753
No 31
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.14 E-value=4e-06 Score=77.85 Aligned_cols=63 Identities=27% Similarity=0.659 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCCccccccccCCCccEEecCCCcccCHHHHHHHHh--cCCCCccccccccceEEE
Q 023674 208 IGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF--QTNRCPICRQPVERLLEI 271 (279)
Q Consensus 208 ~~~s~~~~~~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~--~~~~CPiCR~~i~~~~~i 271 (279)
+..++.++.|++...|+||-....-..++||+|. +|..|+.+++. ....|++||..-+.++-.
T Consensus 49 lttsSaddtDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~fT 113 (493)
T COG5236 49 LTTSSADDTDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVVFT 113 (493)
T ss_pred cccccccccccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEEEe
Confidence 3344455556777899999999999999999999 99999998753 467899999988777654
No 32
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=1.5e-06 Score=86.93 Aligned_cols=48 Identities=31% Similarity=0.708 Sum_probs=43.2
Q ss_pred CCCccccccccCCCc-----cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 218 DSGKECVICLSEPRD-----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~-----~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
..+..|.||++.... ...++|+|. ||..|++.|..+.++||+||..+.
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 456799999999888 799999999 999999999999999999999443
No 33
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=3.6e-06 Score=75.09 Aligned_cols=45 Identities=33% Similarity=0.762 Sum_probs=39.9
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQ 263 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~ 263 (279)
++...|.||++.+++.++++|+|. ||..|+..++.....||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 467899999999999999999999 999999997764468999994
No 34
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=97.91 E-value=3.1e-06 Score=78.41 Aligned_cols=49 Identities=29% Similarity=0.623 Sum_probs=44.4
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
++-..|-||.+-++..++.||+|. ||.-|++........||.|+..+..
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence 445789999999999999999999 9999999988888899999988765
No 35
>PF02762 Cbl_N3: CBL proto-oncogene N-terminus, SH2-like domain; InterPro: IPR014742 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the SH2-like domain.; PDB: 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B 3BUW_B ....
Probab=97.89 E-value=2.8e-06 Score=62.58 Aligned_cols=69 Identities=14% Similarity=0.358 Sum_probs=48.8
Q ss_pred eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCC
Q 023674 108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLS 181 (279)
Q Consensus 108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~ 181 (279)
||+...+.+|.|. |+++|++.|+|+|.|++.++...++++.++++++...-.+.+|. |..+.|.+.+.+
T Consensus 17 ~L~~~~~kpGsYi--FRlSCTrLGQWAIGyV~~dg~I~QTIPqnk~L~qaLidG~reG~---ylyP~G~~~npd 85 (86)
T PF02762_consen 17 RLQHYRDKPGSYI--FRLSCTRLGQWAIGYVTQDGKILQTIPQNKSLYQALIDGSREGF---YLYPDGKDDNPD 85 (86)
T ss_dssp HHGGGTTSTTEEE--EEEESSSTTSEEEEEEETTSEEEEE--SSS-HHHHHHHHHHTTS---S-EETT-SS---
T ss_pred HHHHHhCCcccEE--EeeccccccceeEEEEcCCCcEEEecCCCchHHHHHHhccccce---EECCCCCCCCCC
Confidence 4555667899999 99999999999999999999999999999998887433333444 677777765543
No 36
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.87 E-value=1e-05 Score=59.62 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=39.2
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
+...|.||.+-.+|.++++|||. |++.|+..|..+ ...||+||+.+..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35789999999999999999999 999999999988 7889999998875
No 37
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=97.85 E-value=5.3e-06 Score=75.43 Aligned_cols=49 Identities=29% Similarity=0.512 Sum_probs=43.7
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
+....|.||-+..+..++.+|||. ||.-|++........||+||.....
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 455789999999999999999999 9999999988777899999987654
No 38
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.81 E-value=4.6e-06 Score=84.36 Aligned_cols=54 Identities=22% Similarity=0.668 Sum_probs=45.1
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHH-HHhcCCCCccccccccc--eEEEe
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKV-LQFQTNRCPICRQPVER--LLEIK 272 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~-l~~~~~~CPiCR~~i~~--~~~i~ 272 (279)
..-..|.+|.++.+|+++.-|||. ||..|++. +..+..+||.|...|.. +.+|+
T Consensus 641 K~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 641 KELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred HhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 355689999999999999999999 99999997 44456899999999865 45554
No 39
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=1.3e-05 Score=74.61 Aligned_cols=49 Identities=27% Similarity=0.669 Sum_probs=45.2
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
.++..|.||+..+.++++.||+|. -|..|+.+..++.+.|=.|...|..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence 567899999999999999999999 8999999988888999999998875
No 40
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=1.1e-05 Score=73.69 Aligned_cols=51 Identities=29% Similarity=0.669 Sum_probs=43.0
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHH-hcCCCCccccccccceEE
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQ-FQTNRCPICRQPVERLLE 270 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~-~~~~~CPiCR~~i~~~~~ 270 (279)
...+|.||+....-.+.|+|+|. ||..|++... ..+..|++||.+|.+.+.
T Consensus 6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~i~ 57 (324)
T KOG0824|consen 6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDSTID 57 (324)
T ss_pred cCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcchh
Confidence 35799999999988899999999 9999999743 345669999999988553
No 41
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=1.6e-05 Score=74.99 Aligned_cols=57 Identities=30% Similarity=0.661 Sum_probs=44.6
Q ss_pred CCCccccccccCCCccE-----E---ecCCCcccCHHHHHHHH--hc-----CCCCccccccccceEEE--ecCC
Q 023674 218 DSGKECVICLSEPRDTT-----V---LPCRHMCMCSECAKVLQ--FQ-----TNRCPICRQPVERLLEI--KVNN 275 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~-----~---lPCgH~~~C~~C~~~l~--~~-----~~~CPiCR~~i~~~~~i--~~~~ 275 (279)
..+++|.|||+...+.. + .+|.|. ||..|+..|+ .+ +..||+||.....+..- |+.+
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS~~Wv~t 232 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPSSFWVET 232 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccccceeeee
Confidence 45679999999876655 4 679999 9999999999 45 46799999987765432 5554
No 42
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=2.9e-05 Score=71.90 Aligned_cols=47 Identities=26% Similarity=0.722 Sum_probs=34.8
Q ss_pred CccccccccC---CCccE--EecCCCcccCHHHHHHHHh-cCCCCccccccccc
Q 023674 220 GKECVICLSE---PRDTT--VLPCRHMCMCSECAKVLQF-QTNRCPICRQPVER 267 (279)
Q Consensus 220 ~~~C~IC~~~---~~~~~--~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~ 267 (279)
+..|.||.+. ..++. +.+|||. ||..|+..++. ....||.|+..+..
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence 4579999984 22322 2279999 99999999654 34679999987764
No 43
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=4.7e-06 Score=77.60 Aligned_cols=59 Identities=29% Similarity=0.589 Sum_probs=48.1
Q ss_pred CCCccccccccCCCccEEe-cCCCcccCHHHHHH-HHhcCCCCccccccccceEEEecCCCC
Q 023674 218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKV-LQFQTNRCPICRQPVERLLEIKVNNAA 277 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~-l~~~~~~CPiCR~~i~~~~~i~~~~~~ 277 (279)
..+..|.||++-.+.++.. -|.|. ||.+|+.. ++...+.||.||+...+...+..+.++
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~f 101 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNF 101 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccccCCCCccH
Confidence 3467899999998887665 49999 99999987 666678899999999887777666554
No 44
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.49 E-value=9e-05 Score=56.05 Aligned_cols=46 Identities=28% Similarity=0.543 Sum_probs=34.2
Q ss_pred CccccccccCCC-----------c--cEEecCCCcccCHHHHHHHHhc---CCCCcccccccc
Q 023674 220 GKECVICLSEPR-----------D--TTVLPCRHMCMCSECAKVLQFQ---TNRCPICRQPVE 266 (279)
Q Consensus 220 ~~~C~IC~~~~~-----------~--~~~lPCgH~~~C~~C~~~l~~~---~~~CPiCR~~i~ 266 (279)
+..|-||+..+. + .++--|+|. |+..|+.+|..+ ...||+||+..+
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 446777765443 2 355579999 999999999875 367999999764
No 45
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=9e-05 Score=71.20 Aligned_cols=49 Identities=33% Similarity=0.699 Sum_probs=44.3
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
..+.+|.||+...-..+.+||||. +|..|+.+...+...||+||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 567899999999999999999999 9999998877778899999998875
No 46
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=9.4e-05 Score=71.65 Aligned_cols=49 Identities=29% Similarity=0.720 Sum_probs=38.8
Q ss_pred CCCccccccccCC-----------------CccEEecCCCcccCHHHHHHHHh-cCCCCccccccccc
Q 023674 218 DSGKECVICLSEP-----------------RDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~-----------------~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~ 267 (279)
+....|+|||+.. ++-++.||.|+ |+..|+..|.. .+-.||+||.++-.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 5567899999742 23456799999 99999999987 44589999998743
No 47
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.31 E-value=8.2e-05 Score=51.52 Aligned_cols=46 Identities=37% Similarity=0.813 Sum_probs=39.0
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
....|+.|......-+++||||+ +|..|....+ -+-||+|-.+|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~r--YngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGER--YNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccce-eeccccChhh--ccCCCCCCCcccC
Confidence 34679999999888999999999 9999988765 3589999988763
No 48
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.31 E-value=0.00019 Score=68.87 Aligned_cols=46 Identities=22% Similarity=0.538 Sum_probs=36.8
Q ss_pred CCCccccccccCCCc----cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 218 DSGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
.+-..|.||+++.-+ ++...|.|. |...|+..|+ ..+||+||-...
T Consensus 173 tELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~--~~scpvcR~~q~ 222 (493)
T KOG0804|consen 173 TELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWW--DSSCPVCRYCQS 222 (493)
T ss_pred ccCCCcchhHhhcCccccceeeeecccc-cchHHHhhcc--cCcChhhhhhcC
Confidence 566889999998754 245679999 9999999997 458999996443
No 49
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.08 E-value=0.00046 Score=46.96 Aligned_cols=40 Identities=33% Similarity=0.767 Sum_probs=32.2
Q ss_pred ccccccc--CCCccEEecCC-----CcccCHHHHHHHHhcC--CCCcccc
Q 023674 222 ECVICLS--EPRDTTVLPCR-----HMCMCSECAKVLQFQT--NRCPICR 262 (279)
Q Consensus 222 ~C~IC~~--~~~~~~~lPCg-----H~~~C~~C~~~l~~~~--~~CPiCR 262 (279)
.|.||++ ...+..+.||. |. ++..|+..|...+ .+|++|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899997 55567788996 66 8999999998654 4799995
No 50
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.06 E-value=0.00028 Score=61.19 Aligned_cols=52 Identities=23% Similarity=0.441 Sum_probs=44.3
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i 271 (279)
--..|.||-..++..++.-|||. ||..|+..-......|-+|-....+...+
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred Cceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 34589999999999999999999 99999998666678999998877665544
No 51
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=96.87 E-value=0.00016 Score=51.76 Aligned_cols=43 Identities=28% Similarity=0.805 Sum_probs=23.3
Q ss_pred CccccccccCCCccE-EecCCCcccCHHHHHHHHhcCCCCccccccc
Q 023674 220 GKECVICLSEPRDTT-VLPCRHMCMCSECAKVLQFQTNRCPICRQPV 265 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~-~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i 265 (279)
...|.+|.+-.++.+ +.-|.|. ||+.|+..-. ...||+|+.+.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~--~~~CPvC~~Pa 50 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI--GSECPVCHTPA 50 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS---B-TTTGGGGT--TTB-SSS--B-
T ss_pred hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc--CCCCCCcCChH
Confidence 468999999999975 6789999 9999997632 35699999874
No 52
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00046 Score=63.15 Aligned_cols=50 Identities=24% Similarity=0.501 Sum_probs=43.5
Q ss_pred CccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEE
Q 023674 220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLE 270 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~ 270 (279)
...|-||...+.+.|+.-|+|. ||..|+..-...+..|.+|-+.+.++..
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFN 290 (313)
T ss_pred CccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccc
Confidence 3459999999999999999999 9999999866667899999998877554
No 53
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.53 E-value=0.00063 Score=69.21 Aligned_cols=52 Identities=21% Similarity=0.434 Sum_probs=41.8
Q ss_pred CCccccccccCCCccEE---ecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674 219 SGKECVICLSEPRDTTV---LPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~---lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i 271 (279)
....|.+|+....|-.+ .+|+|. ||..|+..|.....+||+||..|..++..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 34578888877766433 479999 99999999999889999999988765543
No 54
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.0049 Score=56.03 Aligned_cols=51 Identities=29% Similarity=0.681 Sum_probs=40.7
Q ss_pred CCCccccccccCCCccE-EecCCCcccCHHHHHHHHh--cCCCCccccccccceE
Q 023674 218 DSGKECVICLSEPRDTT-VLPCRHMCMCSECAKVLQF--QTNRCPICRQPVERLL 269 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~-~lPCgH~~~C~~C~~~l~~--~~~~CPiCR~~i~~~~ 269 (279)
..+.+|.+|-+.+.... +.+|||. +|..|+..-+. -+-+||.|-..+..+.
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq 290 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEPLQ 290 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcchh
Confidence 67789999999998864 4569999 99999987443 2458999998877544
No 55
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.13 E-value=0.0022 Score=61.90 Aligned_cols=53 Identities=32% Similarity=0.700 Sum_probs=45.5
Q ss_pred CCCccccccccCCCccEE-ecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674 218 DSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i 271 (279)
+++..|.+|+...++.+. ..|||. ||..|+..|......||.||..+.....+
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhcc
Confidence 566899999999999888 599999 99999999998888999998877654443
No 56
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.09 E-value=0.0073 Score=57.73 Aligned_cols=33 Identities=36% Similarity=0.837 Sum_probs=28.3
Q ss_pred CCCccccccccCCCc---cEEecCCCcccCHHHHHHH
Q 023674 218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVL 251 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l 251 (279)
.....|.||++...- ..++||+|. ||..|++..
T Consensus 182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY 217 (445)
T KOG1814|consen 182 NSLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDY 217 (445)
T ss_pred hhcccceeeehhhcCcceeeecccchH-HHHHHHHHH
Confidence 566789999987654 789999999 999999874
No 57
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.89 E-value=0.0045 Score=41.90 Aligned_cols=42 Identities=33% Similarity=0.810 Sum_probs=21.4
Q ss_pred ccccccCC--CccEEec--CCCcccCHHHHHHHHh-cCCCCccccccc
Q 023674 223 CVICLSEP--RDTTVLP--CRHMCMCSECAKVLQF-QTNRCPICRQPV 265 (279)
Q Consensus 223 C~IC~~~~--~~~~~lP--CgH~~~C~~C~~~l~~-~~~~CPiCR~~i 265 (279)
|.+|.+.. ++..++| ||+. +|..|...++. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 56677654 4455666 7888 99999999876 468899999864
No 58
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=95.85 E-value=0.0031 Score=57.93 Aligned_cols=48 Identities=31% Similarity=0.666 Sum_probs=34.7
Q ss_pred CCccccccccCCCc---cEEecCCCcccCHHHHHHH------------------Hhc-----CCCCccccccccc
Q 023674 219 SGKECVICLSEPRD---TTVLPCRHMCMCSECAKVL------------------QFQ-----TNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l------------------~~~-----~~~CPiCR~~i~~ 267 (279)
....|+||+--+.+ .++.+|-|. |+..|+.+. +.. ...||+||..|..
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 35689999976654 678899999 999996542 111 1359999998853
No 59
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.70 E-value=0.0053 Score=63.94 Aligned_cols=48 Identities=23% Similarity=0.620 Sum_probs=36.3
Q ss_pred CCCccccccccCCC-------ccEEecCCCcccCHHHHHHHHhcC--CCCcccccccc
Q 023674 218 DSGKECVICLSEPR-------DTTVLPCRHMCMCSECAKVLQFQT--NRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~-------~~~~lPCgH~~~C~~C~~~l~~~~--~~CPiCR~~i~ 266 (279)
+...||.||++-.. +-+---|+|- |+..|+-.|...+ ++||+||..|.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCccccccc
Confidence 34578999997433 1223349999 9999999998764 67999998765
No 60
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.68 E-value=0.012 Score=53.67 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=44.3
Q ss_pred CCCccccccccCCC----ccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEecCC
Q 023674 218 DSGKECVICLSEPR----DTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNN 275 (279)
Q Consensus 218 ~~~~~C~IC~~~~~----~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~~~ 275 (279)
.....|.|....+. -+.+++|||. |+..++..+. ....||+|-.++...=.|.++.
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence 56678999987763 3677899999 9999999995 4567999999998765555544
No 61
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.0037 Score=56.66 Aligned_cols=49 Identities=24% Similarity=0.569 Sum_probs=38.4
Q ss_pred CCCccccccccCCC----------ccEEecCCCcccCHHHHHHHHhc--CCCCccccccccc
Q 023674 218 DSGKECVICLSEPR----------DTTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~----------~~~~lPCgH~~~C~~C~~~l~~~--~~~CPiCR~~i~~ 267 (279)
.++..|.||-.... ++--|.|+|. |+..|++.|..- +.+||.|+..|+.
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence 45678999986543 3446899999 999999999753 4679999988764
No 62
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.43 E-value=0.0033 Score=45.93 Aligned_cols=46 Identities=28% Similarity=0.574 Sum_probs=22.1
Q ss_pred CccccccccCCC-c--c--EEe---cCCCcccCHHHHHHHHhc-----------CCCCcccccccc
Q 023674 220 GKECVICLSEPR-D--T--TVL---PCRHMCMCSECAKVLQFQ-----------TNRCPICRQPVE 266 (279)
Q Consensus 220 ~~~C~IC~~~~~-~--~--~~l---PCgH~~~C~~C~~~l~~~-----------~~~CPiCR~~i~ 266 (279)
+.+|.||++..- + . ++- .|+.. |+..|+.+|... ..+||.|+++|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 468999998654 2 1 121 47888 999999999653 135999999875
No 63
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.0088 Score=56.80 Aligned_cols=46 Identities=26% Similarity=0.645 Sum_probs=33.0
Q ss_pred ccccccccCCCc----c-EEecCCCcccCHHHHHHHHhc--C-CCCccccccccce
Q 023674 221 KECVICLSEPRD----T-TVLPCRHMCMCSECAKVLQFQ--T-NRCPICRQPVERL 268 (279)
Q Consensus 221 ~~C~IC~~~~~~----~-~~lPCgH~~~C~~C~~~l~~~--~-~~CPiCR~~i~~~ 268 (279)
.+|.||-+ .++ . .+--|||. |+..|+..|... + ..||+||-.+...
T Consensus 5 A~C~Ic~d-~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~~~r 58 (465)
T KOG0827|consen 5 AECHICID-GRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKLQER 58 (465)
T ss_pred ceeeEecc-CCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceeecccce
Confidence 58999944 333 2 23349999 999999999864 2 5799999444443
No 64
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.31 E-value=0.009 Score=57.52 Aligned_cols=36 Identities=33% Similarity=0.795 Sum_probs=31.9
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ 254 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~ 254 (279)
+++..|.||-.-+++.++|+|+|. +|..|+.....+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHN-LCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccH-HHHHHHHhhccc
Confidence 456789999999999999999999 999999986544
No 65
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=94.97 E-value=0.02 Score=46.90 Aligned_cols=50 Identities=26% Similarity=0.525 Sum_probs=36.3
Q ss_pred CccccccccCCCc---cEEecCC------CcccCHHHHHHHHhcCCCCccccccccceEEEecCC
Q 023674 220 GKECVICLSEPRD---TTVLPCR------HMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNN 275 (279)
Q Consensus 220 ~~~C~IC~~~~~~---~~~lPCg------H~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~~~ 275 (279)
..||.||+++..+ ++.+.|| |+ ||.+|.++|....+ |.++.+.++.+.+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~~~~-----rDPfnR~I~y~F~f 84 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRRERN-----RDPFNRNIKYWFNF 84 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHhhcc-----CCCcccceEEEEeC
Confidence 5799999987655 6777887 77 99999999964332 45566666665543
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.87 E-value=0.0071 Score=56.30 Aligned_cols=50 Identities=22% Similarity=0.557 Sum_probs=42.0
Q ss_pred CCCccccccccCCCccE-EecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 218 DSGKECVICLSEPRDTT-VLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~-~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
.....|.+|-.-..|++ +.-|-|. ||..|+.......+.||.|...|...
T Consensus 13 n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t 63 (331)
T KOG2660|consen 13 NPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKT 63 (331)
T ss_pred ccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCc
Confidence 34578999999999854 4569999 99999998777788999999888765
No 67
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=94.81 E-value=0.029 Score=41.88 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.0
Q ss_pred EEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 234 TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 234 ~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
+.--|.|. |..-|+.+|....+.||+||+...
T Consensus 50 ~wG~CnHa-FH~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 50 VWGVCNHA-FHDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred EEEecchH-HHHHHHHHHHhhCCCCCCCCceeE
Confidence 44469999 999999999999999999998754
No 68
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.60 E-value=0.05 Score=45.79 Aligned_cols=52 Identities=27% Similarity=0.635 Sum_probs=37.7
Q ss_pred CccccccccCCCccEEecCC-Ccc-----------cCHHHHHHHHhc-------------------------------CC
Q 023674 220 GKECVICLSEPRDTTVLPCR-HMC-----------MCSECAKVLQFQ-------------------------------TN 256 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCg-H~~-----------~C~~C~~~l~~~-------------------------------~~ 256 (279)
+-.|.|||+-+-++|||-|. |-- -...|+++..+. .-
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 81 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL 81 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence 45799999999999998874 211 246777765321 12
Q ss_pred CCccccccccceEEE
Q 023674 257 RCPICRQPVERLLEI 271 (279)
Q Consensus 257 ~CPiCR~~i~~~~~i 271 (279)
.||+||..|.+-..|
T Consensus 82 ~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 82 ACPLCRGEVKGWTVV 96 (162)
T ss_pred cCccccCceeceEEc
Confidence 499999999987766
No 69
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.024 Score=52.21 Aligned_cols=45 Identities=36% Similarity=0.759 Sum_probs=36.5
Q ss_pred CccccccccCCCc------cEEecCCCcccCHHHHHHHHhcC-CCCccccccc
Q 023674 220 GKECVICLSEPRD------TTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPV 265 (279)
Q Consensus 220 ~~~C~IC~~~~~~------~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i 265 (279)
..+|.||-+.+++ ..+|-|||. +|..|+..+...+ ..||.||...
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence 3579999987765 467789999 9999999977654 5699999985
No 70
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.045 Score=49.21 Aligned_cols=53 Identities=17% Similarity=0.286 Sum_probs=43.6
Q ss_pred CCCccccccccCCCc----cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674 218 DSGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i 271 (279)
+....|.||.+...+ +++-+|||. +|.+|+..+...-..||+|-.+....--|
T Consensus 219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 219 SKRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ccceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcccceE
Confidence 356789999988776 466799999 99999999987778899999888764433
No 71
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.29 E-value=0.019 Score=56.59 Aligned_cols=49 Identities=24% Similarity=0.595 Sum_probs=40.0
Q ss_pred CCCCccccccccCCCccEEecCCCcccCHHHHHHHHh-----cCCCCcccccccc
Q 023674 217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-----QTNRCPICRQPVE 266 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-----~~~~CPiCR~~i~ 266 (279)
+....+|.+|-+...|.+...|.|. ||.-|++.... ..-+||.|-..++
T Consensus 533 nk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 533 NKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred ccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 3566799999999999999999999 99999987543 2357999976543
No 72
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=94.14 E-value=0.052 Score=45.76 Aligned_cols=48 Identities=25% Similarity=0.413 Sum_probs=37.0
Q ss_pred CCCccccccccCCCccEEecCCCcc----cCHHHHHHHHhcC--CCCcccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMC----MCSECAKVLQFQT--NRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~----~C~~C~~~l~~~~--~~CPiCR~~i~ 266 (279)
..+.+|-||++...+ ...||...+ .+.+|++.|...+ ..|.+|+....
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 567899999988754 346887642 5899999998764 56999998753
No 73
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=94.09 E-value=0.03 Score=45.78 Aligned_cols=50 Identities=24% Similarity=0.533 Sum_probs=40.7
Q ss_pred CCCccccccccCCCccEEec----CCCcccCHHHHHHHHhc---CCCCccccccccce
Q 023674 218 DSGKECVICLSEPRDTTVLP----CRHMCMCSECAKVLQFQ---TNRCPICRQPVERL 268 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lP----CgH~~~C~~C~~~l~~~---~~~CPiCR~~i~~~ 268 (279)
..--+|-||.+...|-.+|- ||-. +|..|-..||+- ...||+|+..+.+.
T Consensus 78 ~~lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 78 PKLYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CCceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence 35578999999999988874 8877 999998886654 35699999988764
No 74
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.02 E-value=0.02 Score=51.29 Aligned_cols=42 Identities=31% Similarity=0.917 Sum_probs=30.0
Q ss_pred cccccccCCC-c-cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 222 ECVICLSEPR-D-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 222 ~C~IC~~~~~-~-~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
-|-.|.-... + .-++-|+|+ ||..|...-. ...|++|+..|.
T Consensus 5 hCn~C~~~~~~~~f~LTaC~Hv-fC~~C~k~~~--~~~C~lCkk~ir 48 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHV-FCEPCLKASS--PDVCPLCKKSIR 48 (233)
T ss_pred EeccccccCCCCceeeeechhh-hhhhhcccCC--ccccccccceee
Confidence 4666664433 2 356689999 9999988643 128999999854
No 75
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=94.01 E-value=0.024 Score=38.08 Aligned_cols=44 Identities=25% Similarity=0.785 Sum_probs=26.7
Q ss_pred cccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 222 ~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
-|.-|+-+.+..+ -|.-..+|..|+..|...+..|+||..++-.
T Consensus 4 nCKsCWf~~k~Li--~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S--SSEE--E-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcCCCee--eecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 4778887776644 5764449999999999999999999887644
No 76
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.90 E-value=0.023 Score=58.42 Aligned_cols=45 Identities=31% Similarity=0.678 Sum_probs=37.6
Q ss_pred ccccccccCCCccEEecCCCcccCHHHHHHHHhc--CCCCccccccccc
Q 023674 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQPVER 267 (279)
Q Consensus 221 ~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~--~~~CPiCR~~i~~ 267 (279)
..|.||++ ..+.++..|+|. +|.+|....... ...|++||..+..
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 888889999999 999999885443 2469999987754
No 77
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=93.41 E-value=0.043 Score=59.67 Aligned_cols=50 Identities=26% Similarity=0.730 Sum_probs=39.0
Q ss_pred CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHhc----------CCCCccccccccce
Q 023674 218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQ----------TNRCPICRQPVERL 268 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~----------~~~CPiCR~~i~~~ 268 (279)
+.+..|+||+.+.-. .+-|-|+|+ |+..|.+.+..+ ...||+|...|...
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 556789999987543 577899999 999998875432 35799999988753
No 78
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.85 E-value=0.061 Score=50.45 Aligned_cols=47 Identities=26% Similarity=0.752 Sum_probs=35.2
Q ss_pred CccccccccCCC--ccEEe--cCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 220 GKECVICLSEPR--DTTVL--PCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 220 ~~~C~IC~~~~~--~~~~l--PCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
+..|..|++... |--|. +||-. +|..|...++.. ..+||-||.....
T Consensus 14 ed~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 14 EDYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 445999998653 33454 57888 899999888765 5789999987654
No 79
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.85 E-value=0.069 Score=41.76 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.9
Q ss_pred EecCCCcccCHHHHHHHHhcCCCCcccccc
Q 023674 235 VLPCRHMCMCSECAKVLQFQTNRCPICRQP 264 (279)
Q Consensus 235 ~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~ 264 (279)
.--|.|. |+.-|+.+|.++.+.||+|.+.
T Consensus 78 WG~CNHa-FH~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 78 WGVCNHA-FHFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred eeecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence 3469999 9999999999999999999764
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=0.099 Score=48.83 Aligned_cols=53 Identities=25% Similarity=0.612 Sum_probs=39.1
Q ss_pred CCCccccccccCCCccEEec-CCCcccCHHHHHHHHhcCCCCcccccc--ccceEEE
Q 023674 218 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQTNRCPICRQP--VERLLEI 271 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~~~CPiCR~~--i~~~~~i 271 (279)
.+...|.||+....+.+++- -|-. ||..|+.......+.||+--.+ +..++++
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl 353 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYPASVDHLIRL 353 (357)
T ss_pred CccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCcchHHHHHHH
Confidence 56678999998888765555 4666 9999999988788999985443 3344443
No 81
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=92.60 E-value=0.079 Score=49.35 Aligned_cols=46 Identities=28% Similarity=0.821 Sum_probs=38.0
Q ss_pred CCCccccccccCCCccEEecC--CCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 218 DSGKECVICLSEPRDTTVLPC--RHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPC--gH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
.+-.+|.||.+...-.++ -| ||+ .|..|...+ .++||.||.+|..+
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~---~~~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKV---SNKCPTCRLPIGNI 93 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCcE-ehhhhhhhh---cccCCccccccccH
Confidence 456789999999988766 45 899 999999766 37999999998743
No 82
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=92.53 E-value=0.1 Score=48.47 Aligned_cols=52 Identities=12% Similarity=-0.094 Sum_probs=44.2
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i 271 (279)
-...+|.+|-...-.+++.+|+|.-+|.+|+.. .....|++|..-+..+++|
T Consensus 341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhhcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence 456789999999999999999999999999983 3357899998877777766
No 83
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.1 Score=49.99 Aligned_cols=45 Identities=29% Similarity=0.693 Sum_probs=35.9
Q ss_pred CCccccccccCCCc-----cEEecCCCcccCHHHHHHHHhc--CCCCcccccc
Q 023674 219 SGKECVICLSEPRD-----TTVLPCRHMCMCSECAKVLQFQ--TNRCPICRQP 264 (279)
Q Consensus 219 ~~~~C~IC~~~~~~-----~~~lPCgH~~~C~~C~~~l~~~--~~~CPiCR~~ 264 (279)
.+..|.||++.... ++.+-|||+ |=..|++.|.-+ ...||.|...
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~k 54 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGK 54 (463)
T ss_pred ccccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCCh
Confidence 46789999986543 567789999 999999999854 2569999764
No 84
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=92.19 E-value=0.17 Score=48.17 Aligned_cols=48 Identities=25% Similarity=0.605 Sum_probs=34.5
Q ss_pred CCCccccccccCCCccEEe-cC---------------------CCcccCHHHHHHHHh-------------cCCCCcccc
Q 023674 218 DSGKECVICLSEPRDTTVL-PC---------------------RHMCMCSECAKVLQF-------------QTNRCPICR 262 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~l-PC---------------------gH~~~C~~C~~~l~~-------------~~~~CPiCR 262 (279)
++...|.-||.+..++.+. -| +=| -|.+|+.+|.. .+..||.||
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPm-WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCR 347 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPM-WCLECMGKWFASRQDQQHPETWLSGKCPCPTCR 347 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccch-HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCc
Confidence 4566899999999888775 23 222 38899888742 235699999
Q ss_pred cccc
Q 023674 263 QPVE 266 (279)
Q Consensus 263 ~~i~ 266 (279)
+.+.
T Consensus 348 a~FC 351 (358)
T PF10272_consen 348 AKFC 351 (358)
T ss_pred ccce
Confidence 9764
No 85
>PHA02862 5L protein; Provisional
Probab=91.91 E-value=0.13 Score=42.74 Aligned_cols=46 Identities=15% Similarity=0.351 Sum_probs=35.0
Q ss_pred CccccccccCCCccEEecCCCcc----cCHHHHHHHHhcC--CCCcccccccc
Q 023674 220 GKECVICLSEPRDTTVLPCRHMC----MCSECAKVLQFQT--NRCPICRQPVE 266 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCgH~~----~C~~C~~~l~~~~--~~CPiCR~~i~ 266 (279)
+..|-||++...+. +-||+... .+.+|+.+|...+ ..|++|+.+..
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 45899999987554 57887532 6899999998653 56999998763
No 86
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=91.44 E-value=0.049 Score=50.45 Aligned_cols=49 Identities=31% Similarity=0.699 Sum_probs=34.6
Q ss_pred CccccccccCCCc-cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEE
Q 023674 220 GKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEI 271 (279)
Q Consensus 220 ~~~C~IC~~~~~~-~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i 271 (279)
.-.|.-|---... -.++||.|. ||.+||..-. .+.||.|-..|.++..+
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~--dK~Cp~C~d~VqrIeq~ 139 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHV-FCLECARSDS--DKICPLCDDRVQRIEQI 139 (389)
T ss_pred eEeecccCCcceeeecccccchh-hhhhhhhcCc--cccCcCcccHHHHHHHh
Confidence 3457777544333 356799999 9999998632 35799998888765544
No 87
>PHA03096 p28-like protein; Provisional
Probab=91.40 E-value=0.11 Score=47.98 Aligned_cols=42 Identities=24% Similarity=0.375 Sum_probs=30.8
Q ss_pred ccccccccCCC--------ccEEecCCCcccCHHHHHHHHhcC---CCCccccc
Q 023674 221 KECVICLSEPR--------DTTVLPCRHMCMCSECAKVLQFQT---NRCPICRQ 263 (279)
Q Consensus 221 ~~C~IC~~~~~--------~~~~lPCgH~~~C~~C~~~l~~~~---~~CPiCR~ 263 (279)
.+|-|||+... ..++--|.|. ||..|+..|+... ..|+.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence 78999997543 3456679999 9999999998653 33555544
No 88
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.99 E-value=0.086 Score=39.06 Aligned_cols=29 Identities=28% Similarity=0.649 Sum_probs=23.8
Q ss_pred cCCCcccCHHHHHHHHhc---CCCCcccccccc
Q 023674 237 PCRHMCMCSECAKVLQFQ---TNRCPICRQPVE 266 (279)
Q Consensus 237 PCgH~~~C~~C~~~l~~~---~~~CPiCR~~i~ 266 (279)
-|.|. |..-|+.+|... ...||+||+...
T Consensus 50 ~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHA-FHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHH-HHHHHHHHHhcCccccccCCcchheeE
Confidence 59999 999999998754 256999998653
No 89
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=89.49 E-value=0.19 Score=33.74 Aligned_cols=39 Identities=28% Similarity=0.732 Sum_probs=25.3
Q ss_pred ccccccCCCc--cEEecCCCcc----cCHHHHHHHHhc--CCCCccc
Q 023674 223 CVICLSEPRD--TTVLPCRHMC----MCSECAKVLQFQ--TNRCPIC 261 (279)
Q Consensus 223 C~IC~~~~~~--~~~lPCgH~~----~C~~C~~~l~~~--~~~CPiC 261 (279)
|.||++...+ ..+.||+-.. .+.+|+..|... ..+|.+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7899976543 4678987442 689999999874 4568887
No 90
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=0.33 Score=44.70 Aligned_cols=29 Identities=24% Similarity=0.657 Sum_probs=23.8
Q ss_pred ecCCCcccCHHHHHHHHhc-CCCCccccccc
Q 023674 236 LPCRHMCMCSECAKVLQFQ-TNRCPICRQPV 265 (279)
Q Consensus 236 lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i 265 (279)
-+|||. +|.+|...+... ...||.|-..+
T Consensus 21 n~C~H~-lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 21 NECGHR-LCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred ccccch-HHHHHHHHHHhcCCCCCCcccchh
Confidence 389999 999999998765 46799997643
No 91
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.92 E-value=0.2 Score=46.36 Aligned_cols=43 Identities=30% Similarity=0.753 Sum_probs=35.0
Q ss_pred CccccccccCCCccEEec-CCCcccCHHHHHH-HHhcCCCCccccc
Q 023674 220 GKECVICLSEPRDTTVLP-CRHMCMCSECAKV-LQFQTNRCPICRQ 263 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~-l~~~~~~CPiCR~ 263 (279)
...|..|-...++.+-.+ |+|. ||.+|+.. |....-.||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence 478999999988887775 7899 99999997 4444467999966
No 92
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=88.84 E-value=0.095 Score=50.05 Aligned_cols=48 Identities=23% Similarity=0.580 Sum_probs=37.1
Q ss_pred CCCccccccccC----CCccEEecCCCcccCHHHHHHHHhcC--CCCcccccccc
Q 023674 218 DSGKECVICLSE----PRDTTVLPCRHMCMCSECAKVLQFQT--NRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~----~~~~~~lPCgH~~~C~~C~~~l~~~~--~~CPiCR~~i~ 266 (279)
+.+.-|-.|-+. ..+.-.|||.|+ |+..|+.++..+. .+||-||.-+.
T Consensus 363 e~~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 363 ETELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred HHhhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHHHHh
Confidence 566789999864 345667899999 9999999866553 67999995444
No 93
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=88.81 E-value=0.28 Score=34.36 Aligned_cols=42 Identities=24% Similarity=0.415 Sum_probs=28.6
Q ss_pred CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhc--CCCCcc
Q 023674 218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQ--TNRCPI 260 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~--~~~CPi 260 (279)
.....|.|.+....+.+.- -|||. |..+.+..+..+ ...||+
T Consensus 9 ~~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 9 TISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp B--SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred EeccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence 3457899999999998775 89999 999999998733 356998
No 94
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.65 E-value=0.15 Score=45.81 Aligned_cols=46 Identities=30% Similarity=0.782 Sum_probs=34.2
Q ss_pred CCCccccccccCC---CccEEe--c-CCCcccCHHHHHHHHhcC-CCCc--ccccc
Q 023674 218 DSGKECVICLSEP---RDTTVL--P-CRHMCMCSECAKVLQFQT-NRCP--ICRQP 264 (279)
Q Consensus 218 ~~~~~C~IC~~~~---~~~~~l--P-CgH~~~C~~C~~~l~~~~-~~CP--iCR~~ 264 (279)
..+..|.||.+.. -|+.+| | |-|. +|..|..++.... ..|| -|..-
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kI 62 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKI 62 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHH
Confidence 4566899999753 244443 6 9999 9999999987665 5699 78553
No 95
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=88.05 E-value=0.21 Score=38.47 Aligned_cols=31 Identities=26% Similarity=0.672 Sum_probs=25.2
Q ss_pred CCCccccccccCCCc--cEEecCCCcccCHHHHH
Q 023674 218 DSGKECVICLSEPRD--TTVLPCRHMCMCSECAK 249 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~--~~~lPCgH~~~C~~C~~ 249 (279)
+++..|.+|.....+ .++.||||. ++..|++
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 456789999987765 566799999 9999975
No 96
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=87.14 E-value=0.51 Score=44.03 Aligned_cols=48 Identities=27% Similarity=0.589 Sum_probs=32.4
Q ss_pred CCCccccccccCCC-------------------ccEEecCCCcccCHHHHHHHHhc----------CCCCccccccccc
Q 023674 218 DSGKECVICLSEPR-------------------DTTVLPCRHMCMCSECAKVLQFQ----------TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~-------------------~~~~lPCgH~~~C~~C~~~l~~~----------~~~CPiCR~~i~~ 267 (279)
..+.+|.+|+..-. +-.|-||||+ |.+=....|.+ ...||+|-+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 45789999986432 2356899997 66655553333 2459999887754
No 97
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=86.89 E-value=2.8 Score=41.52 Aligned_cols=6 Identities=17% Similarity=-0.047 Sum_probs=2.5
Q ss_pred CCCCCC
Q 023674 2 GNSGSH 7 (279)
Q Consensus 2 ~~~~s~ 7 (279)
|+|.+.
T Consensus 349 g~~~~p 354 (569)
T KOG3671|consen 349 GPIPLP 354 (569)
T ss_pred CCCCCC
Confidence 344444
No 98
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.92 E-value=0.34 Score=44.53 Aligned_cols=34 Identities=24% Similarity=0.563 Sum_probs=28.9
Q ss_pred CCccccccccCCCccEEecC----CCcccCHHHHHHHHh
Q 023674 219 SGKECVICLSEPRDTTVLPC----RHMCMCSECAKVLQF 253 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPC----gH~~~C~~C~~~l~~ 253 (279)
.-..|.+|.++..|+-|+-| .|. ||+-|.++..+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HK-FCFPCSResIK 304 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHK-FCFPCSRESIK 304 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccc-eecccCHHHHH
Confidence 44789999999999999998 488 99999887443
No 99
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=85.18 E-value=0.22 Score=46.32 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=44.2
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHH-HhcCCCCccccccccceEEEe
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVL-QFQTNRCPICRQPVERLLEIK 272 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l-~~~~~~CPiCR~~i~~~~~i~ 272 (279)
..-.|++|+++...+++.+|+|-.||..|+... .++...|++|...+.....|.
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i~ 189 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQIH 189 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhccc
Confidence 346799999999999999999999999998776 334456999988777766654
No 100
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.94 E-value=0.2 Score=41.13 Aligned_cols=46 Identities=30% Similarity=0.802 Sum_probs=28.1
Q ss_pred CCCcccccccc-CCCccEEecCCCcc------cCHHHHHHHHhcCC----CCccccccccc
Q 023674 218 DSGKECVICLS-EPRDTTVLPCRHMC------MCSECAKVLQFQTN----RCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~-~~~~~~~lPCgH~~------~C~~C~~~l~~~~~----~CPiCR~~i~~ 267 (279)
.++..|-||+. .+.| -|||.| +|..|--.+..+++ .|-+||...+-
T Consensus 63 ~ddatC~IC~KTKFAD----G~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~i 119 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD----GCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQEI 119 (169)
T ss_pred CcCcchhhhhhccccc----ccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHHH
Confidence 45678999995 3444 489975 35555444333333 38888876543
No 101
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.61 E-value=0.66 Score=42.11 Aligned_cols=48 Identities=25% Similarity=0.547 Sum_probs=35.7
Q ss_pred CCCccccccccCCCcc----EEecCCCcc----cCHHHHHHHHhcC--------CCCccccccc
Q 023674 218 DSGKECVICLSEPRDT----TVLPCRHMC----MCSECAKVLQFQT--------NRCPICRQPV 265 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~----~~lPCgH~~----~C~~C~~~l~~~~--------~~CPiCR~~i 265 (279)
+.++.|-||+...+|- -+-||+... .+..|+..|...+ -.|+.|++..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 6678999999877763 345887543 6899999997543 2499998754
No 102
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=83.12 E-value=1 Score=46.91 Aligned_cols=49 Identities=27% Similarity=0.578 Sum_probs=38.2
Q ss_pred CCCccccccccC--CCccEEecCCCcc----cCHHHHHHHHhc--CCCCcccccccc
Q 023674 218 DSGKECVICLSE--PRDTTVLPCRHMC----MCSECAKVLQFQ--TNRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~--~~~~~~lPCgH~~----~C~~C~~~l~~~--~~~CPiCR~~i~ 266 (279)
+++..|.||..+ ..+..+.||+... ++++|+.+|..- ..+|-+|..+++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 556889999965 4468889998753 799999999864 367999987654
No 103
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.93 E-value=1.3 Score=39.49 Aligned_cols=47 Identities=28% Similarity=0.586 Sum_probs=37.0
Q ss_pred CccccccccC--CCccEEecCCCcccCHHHHHHHHhc--------CCCCccccccccc
Q 023674 220 GKECVICLSE--PRDTTVLPCRHMCMCSECAKVLQFQ--------TNRCPICRQPVER 267 (279)
Q Consensus 220 ~~~C~IC~~~--~~~~~~lPCgH~~~C~~C~~~l~~~--------~~~CPiCR~~i~~ 267 (279)
..-|..|-.. ..|++-|-|-|+ |+.+|..+|..+ .-.||.|.++|--
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhl-fHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP 106 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHL-FHWKCLNERAANLPANTAPAGYQCPCCSQEIFP 106 (299)
T ss_pred CCCCceeCCccccCcceeehhhhh-HHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence 4568888754 467888899999 999999998754 2469999987754
No 104
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=80.39 E-value=0.53 Score=45.18 Aligned_cols=54 Identities=20% Similarity=0.538 Sum_probs=0.0
Q ss_pred CCccccccccCC-------------------CccEEecCCCcccCHHHHHHHHhc---------CCCCccccccccc---
Q 023674 219 SGKECVICLSEP-------------------RDTTVLPCRHMCMCSECAKVLQFQ---------TNRCPICRQPVER--- 267 (279)
Q Consensus 219 ~~~~C~IC~~~~-------------------~~~~~lPCgH~~~C~~C~~~l~~~---------~~~CPiCR~~i~~--- 267 (279)
...+|.+|+..- -+-+|-||||+ .=...++-|... ...||+|-..+..
T Consensus 327 ~~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv-~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g 405 (416)
T PF04710_consen 327 RSRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHV-CSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQG 405 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccCCCccccCCceeEeeccccceeecCCCCceeecccccc-cchhhhhhhhcCCCCCCcccccccCCcccCcccCCCC
Confidence 478999999622 23467899998 344455556542 2469999998875
Q ss_pred eEEEec
Q 023674 268 LLEIKV 273 (279)
Q Consensus 268 ~~~i~~ 273 (279)
++++.+
T Consensus 406 ~vrLiF 411 (416)
T PF04710_consen 406 YVRLIF 411 (416)
T ss_dssp ------
T ss_pred ceEEEE
Confidence 444443
No 105
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=80.07 E-value=0.76 Score=47.67 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=34.7
Q ss_pred CCCccccccccCCCc-cEEec---CCCcccCHHHHHHHHhc------CCCCccccccccceEE
Q 023674 218 DSGKECVICLSEPRD-TTVLP---CRHMCMCSECAKVLQFQ------TNRCPICRQPVERLLE 270 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~-~~~lP---CgH~~~C~~C~~~l~~~------~~~CPiCR~~i~~~~~ 270 (279)
+...+|.||++...| .-++| |+|. +|..|+..|+.+ ...|++|..-|...-+
T Consensus 97 ~Ss~~C~~E~S~~~ds~~i~P~~~~~~~-~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR 158 (1134)
T KOG0825|consen 97 DTSPVCEKEHSPDVDSSNICPVQTHVEN-QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSR 158 (1134)
T ss_pred cccchhheecCCcccccCcCchhhhhhh-hhhHHHHHHHHHhhccccccccccHHHHhhhhhh
Confidence 344566666666332 22334 9999 999999998765 2458898877665433
No 106
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=78.47 E-value=1.4 Score=46.11 Aligned_cols=46 Identities=30% Similarity=0.654 Sum_probs=35.4
Q ss_pred CCCccccccccCCCcc-EEec---CCCcccCHHHHHHHHhc-------CCCCcccccc
Q 023674 218 DSGKECVICLSEPRDT-TVLP---CRHMCMCSECAKVLQFQ-------TNRCPICRQP 264 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~-~~lP---CgH~~~C~~C~~~l~~~-------~~~CPiCR~~ 264 (279)
.+..+|.||+++...+ -+|. |-|+ |...|+++|..+ ..+||-|+..
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhV-FHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHV-FHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhh-hhHHHHHHHHHHhhhccCccccCCcccch
Confidence 4568999999987653 4555 5699 999999999864 2569999843
No 107
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=76.57 E-value=13 Score=36.20 Aligned_cols=13 Identities=15% Similarity=0.358 Sum_probs=5.5
Q ss_pred EecCCCCccEEEE
Q 023674 124 TFDAAAPGSITVA 136 (279)
Q Consensus 124 ~fDa~~~~~ItI~ 136 (279)
.+...++.++.|.
T Consensus 429 ElT~~VPa~lRVR 441 (487)
T KOG4672|consen 429 ELTRLVPAQLRVR 441 (487)
T ss_pred HHHhhcchheeee
Confidence 3333444444444
No 108
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=75.23 E-value=0.79 Score=49.85 Aligned_cols=48 Identities=29% Similarity=0.724 Sum_probs=39.4
Q ss_pred CCCccccccccCCCc-cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 218 DSGKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~-~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
.....|.||++..++ -.+.-|||. +|..|...|...+..|++|...+.
T Consensus 1151 ~~~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi~~ 1199 (1394)
T KOG0298|consen 1151 SGHFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSIKG 1199 (1394)
T ss_pred hcccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhhhh
Confidence 344589999998874 456679999 999999999999999999975443
No 109
>PLN02189 cellulose synthase
Probab=73.10 E-value=2.8 Score=45.12 Aligned_cols=48 Identities=27% Similarity=0.658 Sum_probs=33.9
Q ss_pred CCccccccccCCC----ccEEecC---CCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 219 SGKECVICLSEPR----DTTVLPC---RHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~----~~~~lPC---gH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
.+..|.||-++.. .-.+..| +-- +|..|.+--++. ++.||-|++...+
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fp-vCr~Cyeyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFP-VCRPCYEYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 4568999998743 2245555 444 899999765544 5679999998774
No 110
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=72.58 E-value=0.85 Score=46.78 Aligned_cols=46 Identities=28% Similarity=0.708 Sum_probs=38.0
Q ss_pred CccccccccCCCccEEecCCCcccCHHHHHHHHhc---CCCCcccccccc
Q 023674 220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ---TNRCPICRQPVE 266 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~---~~~CPiCR~~i~ 266 (279)
..+|-||+....+.+.+-|.|. ||..|+...... ...|++|+..++
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~-~l~~~~n~~f~~~~~~~~~~lc~~~~e 69 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHI-FLKFCLNKLFESKKGPKQCALCKSDIE 69 (684)
T ss_pred hccCCceeEEeeccchhhhhHH-HHhhhhhceeeccCccccchhhhhhhh
Confidence 4789999999999899999999 999998874433 356999996654
No 111
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=71.02 E-value=37 Score=33.22 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=4.7
Q ss_pred CCCCChhhhH
Q 023674 177 GIDLSMFDEI 186 (279)
Q Consensus 177 ~id~~~~~~~ 186 (279)
+|.+...++.
T Consensus 466 GiqLrKVeeq 475 (518)
T KOG1830|consen 466 GIQLRKVEEQ 475 (518)
T ss_pred cchhHHHHHH
Confidence 4555554443
No 112
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=70.99 E-value=2.7 Score=38.71 Aligned_cols=45 Identities=33% Similarity=0.654 Sum_probs=36.1
Q ss_pred ccccccccC----CCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 221 KECVICLSE----PRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 221 ~~C~IC~~~----~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
..|.||.+. ..++.+++|||. +...|........-+||+|-. +..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~-~h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHY-MHSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred CCCchhHHHhccccccCCccCcccc-hHHHHHHHHhccCCCCCcccc-hHH
Confidence 349999865 445788999999 899999998777788999988 443
No 113
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.38 E-value=1.6 Score=45.74 Aligned_cols=45 Identities=18% Similarity=0.503 Sum_probs=34.9
Q ss_pred ccccccccCCCc-cEEecCCCcccCHHHHHHHHhcCCCCccccccccceE
Q 023674 221 KECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 269 (279)
Q Consensus 221 ~~C~IC~~~~~~-~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~ 269 (279)
..|..|-....- ++..-|||. ++..|+. .....||-|+......+
T Consensus 841 skCs~C~~~LdlP~VhF~CgHs-yHqhC~e---~~~~~CP~C~~e~~~~m 886 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHS-YHQHCLE---DKEDKCPKCLPELRGVM 886 (933)
T ss_pred eeecccCCccccceeeeecccH-HHHHhhc---cCcccCCccchhhhhhH
Confidence 489999987765 455689999 9999998 33468999998555443
No 114
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=68.04 E-value=1.3 Score=40.91 Aligned_cols=54 Identities=26% Similarity=0.440 Sum_probs=28.6
Q ss_pred CCCccccccccCCCccEEecC-----CCcccCHHHHHHHHhcCCCCccccccccceEEEe
Q 023674 218 DSGKECVICLSEPRDTTVLPC-----RHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 272 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPC-----gH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~ 272 (279)
.....|.||=+.+.-.++..= +|+ .|.-|...|......||.|-..-...+..+
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 445799999998877666543 577 899999999988889999987665555543
No 115
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.57 E-value=1.7 Score=44.26 Aligned_cols=38 Identities=32% Similarity=0.685 Sum_probs=28.9
Q ss_pred CCccccccccCCC----ccEEecCCCcccCHHHHHHHHhcCCCCc
Q 023674 219 SGKECVICLSEPR----DTTVLPCRHMCMCSECAKVLQFQTNRCP 259 (279)
Q Consensus 219 ~~~~C~IC~~~~~----~~~~lPCgH~~~C~~C~~~l~~~~~~CP 259 (279)
+-..|.||+..+. ..+.+-|||. .|..|+..+-.+ +||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNA--SCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhc--cCC
Confidence 3467999976554 3566779999 999999988643 677
No 116
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=63.85 E-value=6.2 Score=37.98 Aligned_cols=46 Identities=22% Similarity=0.452 Sum_probs=33.3
Q ss_pred CCccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCC---CCccccccc
Q 023674 219 SGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTN---RCPICRQPV 265 (279)
Q Consensus 219 ~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~---~CPiCR~~i 265 (279)
....|.|=.+.-.+ .+.|.|||. +|.+=+.+|..... +||.|-...
T Consensus 333 SvF~CPVlKeqtsdeNPPm~L~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 333 SVFICPVLKEQTSDENPPMMLICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ceeecccchhhccCCCCCeeeeccce-ecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 34567775443332 577899999 99999999987644 799996543
No 117
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.60 E-value=6.4 Score=35.82 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=40.7
Q ss_pred CCCccccccccC----CCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEecCCC
Q 023674 218 DSGKECVICLSE----PRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNA 276 (279)
Q Consensus 218 ~~~~~C~IC~~~----~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~~~~ 276 (279)
.....|.|---. .+-..++.|||. |=..-++++. ...|.+|.+.++..-.|-+|.+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~ 168 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK--ASVCHVCGAAYQEDDVIVLNGT 168 (293)
T ss_pred cceeecccccceecceEEEEEEecccee-ccHHHHHHhh--hccccccCCcccccCeEeeCCC
Confidence 456778885533 344678999999 8777776664 5689999999987666666543
No 118
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=62.85 E-value=3.2 Score=35.29 Aligned_cols=24 Identities=46% Similarity=0.927 Sum_probs=17.2
Q ss_pred CCCccccccccCCC--c-cEEecCCCc
Q 023674 218 DSGKECVICLSEPR--D-TTVLPCRHM 241 (279)
Q Consensus 218 ~~~~~C~IC~~~~~--~-~~~lPCgH~ 241 (279)
++..||+||+++.. + +.-|||-.+
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLCI 201 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLCI 201 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEEE
Confidence 56679999998764 2 456788544
No 119
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=61.92 E-value=7.2 Score=40.57 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=34.5
Q ss_pred CccccccccCCCccEEec--CCCcccCHHHHHHHHhcCCCCcc
Q 023674 220 GKECVICLSEPRDTTVLP--CRHMCMCSECAKVLQFQTNRCPI 260 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lP--CgH~~~C~~C~~~l~~~~~~CPi 260 (279)
...|++|-.-.+.+.++. |||. .+.+|++.|......|+.
T Consensus 779 ~~~CtVC~~vi~G~~~~c~~C~H~-gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 779 SAKCTVCDLVIRGVDVWCQVCGHG-GHDSHLKSWFFKASPCAK 820 (839)
T ss_pred hcCceeecceeeeeEeeccccccc-ccHHHHHHHHhcCCCCcc
Confidence 347899988888888875 9999 999999999998888876
No 120
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=61.25 E-value=5.9 Score=37.27 Aligned_cols=46 Identities=39% Similarity=0.899 Sum_probs=36.7
Q ss_pred ccccccccCC--CccEEe--cCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 221 KECVICLSEP--RDTTVL--PCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 221 ~~C~IC~~~~--~~~~~l--PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
..|.||.+.. .+..++ +|++. +|..|.........+|+.||.....
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCcccc
Confidence 6899999854 334444 58999 9999999988888999999976654
No 121
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.46 E-value=4.7 Score=37.41 Aligned_cols=28 Identities=29% Similarity=0.808 Sum_probs=20.6
Q ss_pred CCCcccCHHHHHHHH-------------hcCCCCcccccccc
Q 023674 238 CRHMCMCSECAKVLQ-------------FQTNRCPICRQPVE 266 (279)
Q Consensus 238 CgH~~~C~~C~~~l~-------------~~~~~CPiCR~~i~ 266 (279)
|+-+ -|.+|+..|. .++..||.||+.+.
T Consensus 325 crp~-wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPL-WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccH-HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 5556 6889987764 34578999999764
No 122
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=59.75 E-value=6.8 Score=29.22 Aligned_cols=48 Identities=23% Similarity=0.585 Sum_probs=19.0
Q ss_pred CCccccccccCCCc----cEEe---cCCCcccCHHHHHHHHh-cCCCCccccccccc
Q 023674 219 SGKECVICLSEPRD----TTVL---PCRHMCMCSECAKVLQF-QTNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~----~~~l---PCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~ 267 (279)
++..|.||-+..-. -+|. -|+-- +|+.|..--++ ....||.|++....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fP-vCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFP-VCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCc-cchhHHHHHhhcCcccccccCCCccc
Confidence 45789999875432 1333 45555 79999886444 45679999987654
No 123
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=59.67 E-value=8.1 Score=42.22 Aligned_cols=11 Identities=27% Similarity=0.519 Sum_probs=4.3
Q ss_pred CCccEEEEEee
Q 023674 129 APGSITVAFFG 139 (279)
Q Consensus 129 ~~~~ItI~f~a 139 (279)
+.+.|.-.|+|
T Consensus 155 ~prviep~~~a 165 (2365)
T COG5178 155 VPRVIEPQLFA 165 (2365)
T ss_pred CccccCcceee
Confidence 33334333443
No 124
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=59.52 E-value=10 Score=24.82 Aligned_cols=38 Identities=21% Similarity=0.531 Sum_probs=17.8
Q ss_pred ccccccCCCccEEec---CCCcccCHHHHHHHHhcCC--CCccc
Q 023674 223 CVICLSEPRDTTVLP---CRHMCMCSECAKVLQFQTN--RCPIC 261 (279)
Q Consensus 223 C~IC~~~~~~~~~lP---CgH~~~C~~C~~~l~~~~~--~CPiC 261 (279)
|.+|.+-...-+.=+ |+=. ++..|+...+.... +||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r-~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVR-LHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--E-E-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCch-HHHHHHHHHHhcCCCCCCcCC
Confidence 444544433333322 5556 89999998655433 69987
No 125
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=57.70 E-value=10 Score=25.62 Aligned_cols=43 Identities=26% Similarity=0.655 Sum_probs=17.8
Q ss_pred ccccccccCCCccE-EecCCCcccCHHHHHHH--Hhc--CCCCcccccc
Q 023674 221 KECVICLSEPRDTT-VLPCRHMCMCSECAKVL--QFQ--TNRCPICRQP 264 (279)
Q Consensus 221 ~~C~IC~~~~~~~~-~lPCgH~~~C~~C~~~l--~~~--~~~CPiCR~~ 264 (279)
..|.|.+...+..+ -.-|.|+ -|.+=..-+ ..+ .-+||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~-~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHL-QCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCccc-ceECHHHHHHHhhccCCeECcCCcCc
Confidence 46888887777644 4469998 554432222 122 2469999863
No 126
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.12 E-value=3.6 Score=39.75 Aligned_cols=32 Identities=38% Similarity=0.851 Sum_probs=23.1
Q ss_pred CCccccccccCCCc----cEEecCCCcccCHHHHHHH
Q 023674 219 SGKECVICLSEPRD----TTVLPCRHMCMCSECAKVL 251 (279)
Q Consensus 219 ~~~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l 251 (279)
...+|.||+.+... ..+.-|+|. ||.+|.+..
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~-fC~~C~k~~ 180 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHR-FCKDCVKQH 180 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccch-hhhHHhHHH
Confidence 35689999943322 234679999 999998863
No 127
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=56.40 E-value=8.8 Score=36.01 Aligned_cols=45 Identities=24% Similarity=0.529 Sum_probs=35.1
Q ss_pred CCCccccccccCCCccEEec-----CCCcccCHHHHHHHHhcCCCCccccc
Q 023674 218 DSGKECVICLSEPRDTTVLP-----CRHMCMCSECAKVLQFQTNRCPICRQ 263 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lP-----CgH~~~C~~C~~~l~~~~~~CPiCR~ 263 (279)
+....|.||-+.+.-.++.- =+|+ .|.-|...|.....+|+.|-.
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYL-HCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEE-EcCCCCCcccccCccCCCCCC
Confidence 45678999999886544321 2455 899999999998899999986
No 128
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=56.23 E-value=6.7 Score=40.87 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=28.3
Q ss_pred ccccccccCCC--ccEEecCCCcccCHHHHHHHHhcCCCCcc
Q 023674 221 KECVICLSEPR--DTTVLPCRHMCMCSECAKVLQFQTNRCPI 260 (279)
Q Consensus 221 ~~C~IC~~~~~--~~~~lPCgH~~~C~~C~~~l~~~~~~CPi 260 (279)
..|.||--..+ ..+-.-|+|. ++..|+..|+.....||-
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv-~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHV-GHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred eeeeeEeeEeeccchhhcccccc-ccHHHHHHHHhcCCcCCC
Confidence 34666554333 2344679999 999999999998888874
No 129
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=55.04 E-value=9 Score=35.87 Aligned_cols=46 Identities=28% Similarity=0.577 Sum_probs=35.1
Q ss_pred CCCccccccccCCCccEEec------CCCcccCHHHHHHHHhcCCCCcccccc
Q 023674 218 DSGKECVICLSEPRDTTVLP------CRHMCMCSECAKVLQFQTNRCPICRQP 264 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lP------CgH~~~C~~C~~~l~~~~~~CPiCR~~ 264 (279)
+....|.||-+.+.-.++.- =+++ .|.-|...|.....+|+.|-..
T Consensus 182 ~~~~~CPvCGs~P~~s~~~~~~~~~G~RyL-~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 182 ESRTLCPACGSPPVASMVRQGGKETGLRYL-SCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCCCcCCCCCChhhhhhhcccCCCCCceEE-EcCCCCCcccccCccCCCCCCC
Confidence 34558999999886543322 2355 8999999999988999999874
No 130
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.77 E-value=9.4 Score=33.03 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=34.0
Q ss_pred CCccccccccCCCccEE-------ecCCCcccCHHHHHHHHhc-----------CCCCcccccccc
Q 023674 219 SGKECVICLSEPRDTTV-------LPCRHMCMCSECAKVLQFQ-----------TNRCPICRQPVE 266 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~-------lPCgH~~~C~~C~~~l~~~-----------~~~CPiCR~~i~ 266 (279)
+-..|-||+.-.-+-++ .-||-- |+.-|+..|.+. ...||.|..+|.
T Consensus 164 ~~~~cgicyayqldGTipDqtCdN~qCgkp-FHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 164 ELGACGICYAYQLDGTIPDQTCDNIQCGKP-FHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhcccceeeeecCCccccccccccccCCc-HHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 34579999865443222 469988 999999998752 257999988875
No 131
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=51.33 E-value=88 Score=30.73 Aligned_cols=6 Identities=83% Similarity=2.112 Sum_probs=2.4
Q ss_pred CCCCCC
Q 023674 15 PPPTPP 20 (279)
Q Consensus 15 ~ppppp 20 (279)
+||+||
T Consensus 305 pPP~pp 310 (518)
T KOG1830|consen 305 PPPPPP 310 (518)
T ss_pred CCCCCC
Confidence 334444
No 132
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.12 E-value=8.7 Score=40.63 Aligned_cols=32 Identities=22% Similarity=0.458 Sum_probs=25.3
Q ss_pred CCCccccccccCCC--ccEEecCCCcccCHHHHHH
Q 023674 218 DSGKECVICLSEPR--DTTVLPCRHMCMCSECAKV 250 (279)
Q Consensus 218 ~~~~~C~IC~~~~~--~~~~lPCgH~~~C~~C~~~ 250 (279)
+.+..|-+|....- --.+.||||. |+++|+..
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~-FH~~Cl~~ 848 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHC-FHRDCLIR 848 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccch-HHHHHHHH
Confidence 45678999987543 4567799999 99999765
No 133
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=48.48 E-value=14 Score=33.67 Aligned_cols=49 Identities=24% Similarity=0.485 Sum_probs=35.8
Q ss_pred CCccccccccCCCc----cEEecCCCcc----cCHHHHHHHHh--cCCCCccccccccc
Q 023674 219 SGKECVICLSEPRD----TTVLPCRHMC----MCSECAKVLQF--QTNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~----~~~lPCgH~~----~C~~C~~~l~~--~~~~CPiCR~~i~~ 267 (279)
++..|.||..+... ..+.||.... .+..|+..|.. ....|-+|......
T Consensus 77 ~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 77 SGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred CCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 35789999986643 3577887432 58899999987 44679999875543
No 134
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.78 E-value=11 Score=37.00 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=35.8
Q ss_pred CCCccccccccCCCc-cEEecCCCcccCHHHHHHHHhc------C--CCC--ccccccccc
Q 023674 218 DSGKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQ------T--NRC--PICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~-~~~lPCgH~~~C~~C~~~l~~~------~--~~C--PiCR~~i~~ 267 (279)
....+|-||.+.... ++.+.|||. ||..|......+ . -+| .-|++.+..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~ 127 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHP-FCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGE 127 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcH-HHHHHHHHHhhheeeccccccccCCCCCccccCCC
Confidence 345789999999885 888899999 999998874332 1 134 447776664
No 135
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.16 E-value=2.8 Score=38.44 Aligned_cols=45 Identities=31% Similarity=0.658 Sum_probs=34.1
Q ss_pred CCccccccccCCC-c-----cEEec--------CCCcccCHHHHHHHHhcC-CCCcccccc
Q 023674 219 SGKECVICLSEPR-D-----TTVLP--------CRHMCMCSECAKVLQFQT-NRCPICRQP 264 (279)
Q Consensus 219 ~~~~C~IC~~~~~-~-----~~~lP--------CgH~~~C~~C~~~l~~~~-~~CPiCR~~ 264 (279)
....|.||..... + ..++. |||. +|..|+.....+. ..||.||..
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~ht-lc~~c~~~~l~~~~~~cp~~~~~ 265 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHT-LCKECIDTILLQAGIKCPFCTWS 265 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHH-HHhcchHHHHHHhhhcCCcccce
Confidence 4477999997665 2 24455 9999 9999999876554 589999864
No 136
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=44.85 E-value=20 Score=25.10 Aligned_cols=22 Identities=27% Similarity=0.868 Sum_probs=18.1
Q ss_pred cCHHHHHHHHhcCCCCcccccccc
Q 023674 243 MCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 243 ~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
||.+|+..+. .+.||-|...+.
T Consensus 31 FC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 31 FCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred ccHHHHHHHh--cCcCcCCCCccc
Confidence 8999999875 468999987654
No 137
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=44.39 E-value=20 Score=39.48 Aligned_cols=6 Identities=50% Similarity=0.800 Sum_probs=2.9
Q ss_pred ccEEEE
Q 023674 131 GSITVA 136 (279)
Q Consensus 131 ~~ItI~ 136 (279)
|.|++.
T Consensus 147 Gaitfv 152 (2365)
T COG5178 147 GAITFV 152 (2365)
T ss_pred ceEEEe
Confidence 555444
No 138
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.81 E-value=17 Score=33.02 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=29.0
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHH
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKV 250 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~ 250 (279)
.+...|..|+.-.++.++.+=||+ ||++|+.+
T Consensus 41 K~FdcCsLtLqPc~dPvit~~Gyl-fdrEaILe 72 (303)
T KOG3039|consen 41 KPFDCCSLTLQPCRDPVITPDGYL-FDREAILE 72 (303)
T ss_pred CCcceeeeecccccCCccCCCCee-eeHHHHHH
Confidence 456789999999999999999999 99999876
No 139
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=41.79 E-value=21 Score=23.87 Aligned_cols=30 Identities=27% Similarity=0.638 Sum_probs=23.3
Q ss_pred cccccccCCCccEEecCCCcccCHHHHHHHHh
Q 023674 222 ECVICLSEPRDTTVLPCRHMCMCSECAKVLQF 253 (279)
Q Consensus 222 ~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~ 253 (279)
.|.||-....+-+. -.|.. +|.+|-..+..
T Consensus 1 ~CiiC~~~~~~GI~-I~~~f-IC~~CE~~iv~ 30 (46)
T PF10764_consen 1 KCIICGKEKEEGIH-IYGKF-ICSDCEKEIVN 30 (46)
T ss_pred CeEeCCCcCCCCEE-EECeE-ehHHHHHHhcc
Confidence 48999988887433 46888 99999998764
No 140
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=40.64 E-value=15 Score=25.17 Aligned_cols=25 Identities=24% Similarity=0.851 Sum_probs=16.0
Q ss_pred cCCCcccCHHHHHHHHhcCCCCcccc
Q 023674 237 PCRHMCMCSECAKVLQFQTNRCPICR 262 (279)
Q Consensus 237 PCgH~~~C~~C~~~l~~~~~~CPiCR 262 (279)
-|++. ||.+|-.-+...-..||-|-
T Consensus 26 ~C~~~-FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNH-FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTT---B-HHHHHTTTTTS-SSSTT-
T ss_pred CCCCc-cccCcChhhhccccCCcCCC
Confidence 47888 99999877666667899984
No 141
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.15 E-value=15 Score=29.92 Aligned_cols=26 Identities=27% Similarity=0.796 Sum_probs=20.0
Q ss_pred cCHHHHHHHHhcCCCCccccccccceEEE
Q 023674 243 MCSECAKVLQFQTNRCPICRQPVERLLEI 271 (279)
Q Consensus 243 ~C~~C~~~l~~~~~~CPiCR~~i~~~~~i 271 (279)
||+.|-.... ..||+|..+|.+...+
T Consensus 30 fcskcgeati---~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATI---TQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHH---hcCCccCCccccccee
Confidence 8999977642 4799999999875544
No 142
>PLN02400 cellulose synthase
Probab=39.75 E-value=18 Score=39.31 Aligned_cols=50 Identities=26% Similarity=0.559 Sum_probs=33.6
Q ss_pred CCCccccccccCCCcc----EEec---CCCcccCHHHHHHHHh-cCCCCccccccccce
Q 023674 218 DSGKECVICLSEPRDT----TVLP---CRHMCMCSECAKVLQF-QTNRCPICRQPVERL 268 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~----~~lP---CgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~~ 268 (279)
-.+..|.||-++..-+ .|.- |+-- .|+.|.+-=++ .+..||.|++..++.
T Consensus 34 ~~gqiCqICGD~VG~t~dGe~FVAC~eCaFP-VCRpCYEYERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 34 LNGQICQICGDDVGVTETGDVFVACNECAFP-VCRPCYEYERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred cCCceeeecccccCcCCCCCEEEEEccCCCc-cccchhheecccCCccCcccCCccccc
Confidence 3456899999875432 3444 4444 79999875333 356799999987743
No 143
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=38.33 E-value=26 Score=38.17 Aligned_cols=55 Identities=24% Similarity=0.541 Sum_probs=36.5
Q ss_pred CCccccccccCCCcc----EEecC---CCcccCHHHHHHHHh-cCCCCccccccccc---eEEEecC
Q 023674 219 SGKECVICLSEPRDT----TVLPC---RHMCMCSECAKVLQF-QTNRCPICRQPVER---LLEIKVN 274 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~----~~lPC---gH~~~C~~C~~~l~~-~~~~CPiCR~~i~~---~~~i~~~ 274 (279)
++..|.||-++..-+ .++-| +-- .|+.|.+-=++ .+..||.|++...+ .-++..+
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FP-VCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gD 81 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGD 81 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCc-cccchhhhhhhcCCccCCccCCchhhhcCCCCcCcc
Confidence 456899999874432 34444 444 79999875444 45679999998774 3355554
No 144
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=38.31 E-value=1.4e+02 Score=31.66 Aligned_cols=6 Identities=50% Similarity=0.794 Sum_probs=3.0
Q ss_pred hhhhcC
Q 023674 203 QEIYGI 208 (279)
Q Consensus 203 ~e~~~~ 208 (279)
+|.||.
T Consensus 786 Rer~G~ 791 (894)
T KOG0132|consen 786 RERYGN 791 (894)
T ss_pred hhhhcC
Confidence 445554
No 145
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=38.13 E-value=20 Score=27.54 Aligned_cols=38 Identities=21% Similarity=0.610 Sum_probs=28.4
Q ss_pred CccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
...|.||-...... ||. +|..||-. ...|.+|-..|..
T Consensus 44 ~~~C~~CK~~v~q~-----g~~-YCq~CAYk----kGiCamCGKki~d 81 (90)
T PF10235_consen 44 SSKCKICKTKVHQP-----GAK-YCQTCAYK----KGICAMCGKKILD 81 (90)
T ss_pred CccccccccccccC-----CCc-cChhhhcc----cCcccccCCeecc
Confidence 46799998775543 555 89999765 4789999887743
No 146
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.59 E-value=25 Score=25.95 Aligned_cols=24 Identities=25% Similarity=0.656 Sum_probs=18.2
Q ss_pred CcccCHHHHHHHHhcCCCCcccccccc
Q 023674 240 HMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 240 H~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
|. ||.+|+.... ...||-|-..+.
T Consensus 29 cT-FCadCae~~l--~g~CPnCGGelv 52 (84)
T COG3813 29 CT-FCADCAENRL--HGLCPNCGGELV 52 (84)
T ss_pred ee-hhHhHHHHhh--cCcCCCCCchhh
Confidence 55 9999998643 568999976554
No 147
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=36.22 E-value=5.6 Score=22.53 Aligned_cols=21 Identities=29% Similarity=0.888 Sum_probs=11.1
Q ss_pred CHHHHHHHHhcCCCCcccccc
Q 023674 244 CSECAKVLQFQTNRCPICRQP 264 (279)
Q Consensus 244 C~~C~~~l~~~~~~CPiCR~~ 264 (279)
|..|-..+......|+.|-..
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CcccCCCCCCcCcchhhhCCc
Confidence 445555554444556666543
No 148
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=34.59 E-value=13 Score=25.21 Aligned_cols=12 Identities=33% Similarity=1.237 Sum_probs=6.1
Q ss_pred CCCccccccccc
Q 023674 256 NRCPICRQPVER 267 (279)
Q Consensus 256 ~~CPiCR~~i~~ 267 (279)
..||+|.+.+..
T Consensus 21 ~~CPlC~r~l~~ 32 (54)
T PF04423_consen 21 GCCPLCGRPLDE 32 (54)
T ss_dssp EE-TTT--EE-H
T ss_pred CcCCCCCCCCCH
Confidence 489999988753
No 149
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=33.17 E-value=30 Score=27.67 Aligned_cols=41 Identities=20% Similarity=0.575 Sum_probs=29.9
Q ss_pred ccccccccCCCcc--------------EEecCCCcccCHHHHHHHHhcCCCCcccc
Q 023674 221 KECVICLSEPRDT--------------TVLPCRHMCMCSECAKVLQFQTNRCPICR 262 (279)
Q Consensus 221 ~~C~IC~~~~~~~--------------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR 262 (279)
..|.-|+..+.+. .-.-|.+. ||.+|-.-+...-..||.|-
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNV-FCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCc-cccccchhhhhhccCCcCCC
Confidence 4588887755432 12358888 99999888877778899995
No 150
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=33.16 E-value=36 Score=31.31 Aligned_cols=16 Identities=19% Similarity=0.650 Sum_probs=10.2
Q ss_pred CHHHHHHHHhc-CCCCc
Q 023674 244 CSECAKVLQFQ-TNRCP 259 (279)
Q Consensus 244 C~~C~~~l~~~-~~~CP 259 (279)
+.+|...|... ...||
T Consensus 58 HrdCFEK~HlIanQ~~p 74 (285)
T PF06937_consen 58 HRDCFEKYHLIANQDCP 74 (285)
T ss_pred hHHHHHHHHHHHcCCCC
Confidence 56788876543 34677
No 151
>PLN02436 cellulose synthase A
Probab=32.44 E-value=35 Score=37.17 Aligned_cols=48 Identities=29% Similarity=0.676 Sum_probs=33.7
Q ss_pred CCccccccccCCCcc----EEecC---CCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 219 SGKECVICLSEPRDT----TVLPC---RHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~----~~lPC---gH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
....|.||-++...+ .|.-| +-- +|..|.+--++. ++.||-|++...+
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fp-vCr~Cyeyer~eg~~~Cpqckt~Y~r 90 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFP-VCRPCYEYERREGNQACPQCKTRYKR 90 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCc-cccchhhhhhhcCCccCcccCCchhh
Confidence 456899999875322 44555 444 899999765544 5679999998774
No 152
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.17 E-value=15 Score=34.23 Aligned_cols=50 Identities=28% Similarity=0.555 Sum_probs=39.9
Q ss_pred CCCccccccccCCCccEE-ecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 218 DSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
++...|-||+....-... --|.|. ||.-|...|....+.|+.||..++-.
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~q-f~~~~p~~~~~~~~~~~d~~~~~~pv 153 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQ-FCYVCPKSNFAMGNDCPDCRGKISPV 153 (324)
T ss_pred CCccceeeeeeeEEecccccCceee-eeecCCchhhhhhhccchhhcCcCce
Confidence 566789999987665433 359999 99999999988888999999877654
No 153
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=31.31 E-value=12 Score=21.92 Aligned_cols=22 Identities=27% Similarity=0.703 Sum_probs=11.8
Q ss_pred CHHHHHHHHhcCCCCccccccc
Q 023674 244 CSECAKVLQFQTNRCPICRQPV 265 (279)
Q Consensus 244 C~~C~~~l~~~~~~CPiCR~~i 265 (279)
|-+|...+......||.|--.+
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCCC
Confidence 4455555554555666665443
No 154
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.18 E-value=27 Score=29.47 Aligned_cols=26 Identities=27% Similarity=0.778 Sum_probs=20.8
Q ss_pred cCHHHHHHHHhcCCCCccccccccceEEE
Q 023674 243 MCSECAKVLQFQTNRCPICRQPVERLLEI 271 (279)
Q Consensus 243 ~C~~C~~~l~~~~~~CPiCR~~i~~~~~i 271 (279)
||..|-.... ..||.|..+|.+...+
T Consensus 30 fC~kCG~~tI---~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTI---TSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHH---HHCcCCCCCCCCceec
Confidence 9999988753 5899999999875443
No 155
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=30.06 E-value=2.7 Score=30.75 Aligned_cols=42 Identities=33% Similarity=0.625 Sum_probs=21.4
Q ss_pred ccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 221 KECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 221 ~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
..|..|.......- +|. .|..|...... ...||-|.++++.+
T Consensus 2 ~~CP~C~~~L~~~~----~~~-~C~~C~~~~~~-~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHY-HCEACQKDYKK-EAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEET----TEE-EETTT--EEEE-EEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEeC----CEE-ECcccccccee-cccCCCcccHHHHH
Confidence 46888877644332 566 88888776432 24689888876654
No 156
>PLN02248 cellulose synthase-like protein
Probab=29.82 E-value=61 Score=35.57 Aligned_cols=30 Identities=30% Similarity=0.792 Sum_probs=24.8
Q ss_pred Eec--CCCcccCHHHHHHHHhcCCCCccccccc
Q 023674 235 VLP--CRHMCMCSECAKVLQFQTNRCPICRQPV 265 (279)
Q Consensus 235 ~lP--CgH~~~C~~C~~~l~~~~~~CPiCR~~i 265 (279)
++| |++. +|++|..........||-|+.+.
T Consensus 145 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 176 (1135)
T PLN02248 145 LLPCECGFK-ICRDCYIDAVKSGGICPGCKEPY 176 (1135)
T ss_pred CCcccccch-hHHhHhhhhhhcCCCCCCCcccc
Confidence 445 7788 89999988777788999998876
No 157
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=29.08 E-value=1.7e+02 Score=21.73 Aligned_cols=57 Identities=12% Similarity=0.234 Sum_probs=37.7
Q ss_pred CCCccccccccccccceeecCCceeEEeCCCC----------CCeeEEEEEecCCCCccEEEEEeee
Q 023674 84 PPQYMEHQKAVTIRNDVNVKKETLRVEPDEEN----------PGQFLVAFTFDAAAPGSITVAFFGK 140 (279)
Q Consensus 84 ~~~~~~~q~t~~irn~VNi~K~Slrl~~~~~~----------~~~y~l~F~fDa~~~~~ItI~f~a~ 140 (279)
|.+-+.--.+.||++...+..+++.|.+++.. .+.+..+|.+.+.....--+|+|+.
T Consensus 8 p~~vV~~G~~VTL~C~~~~~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~ 74 (94)
T cd05711 8 PSPVVPSGENVTLQCHSDIRFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYG 74 (94)
T ss_pred CCCccCCCCeEEEEEecCCCCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEE
Confidence 33445566678899877777777777775432 1345667777777777777777764
No 158
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.78 E-value=9.2 Score=39.46 Aligned_cols=48 Identities=21% Similarity=0.583 Sum_probs=32.9
Q ss_pred CCCcccccccc-CCCccEEecCCCcccCHHHHHHHH--hcCCCCccccccccc
Q 023674 218 DSGKECVICLS-EPRDTTVLPCRHMCMCSECAKVLQ--FQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~-~~~~~~~lPCgH~~~C~~C~~~l~--~~~~~CPiCR~~i~~ 267 (279)
+.+..|+||++ ...-+.+..|.|. +|..|..... +....|..| ..+..
T Consensus 76 ~~e~~~~if~~d~~~y~~~~~~~~~-~C~~C~~~~~~~~~~~~~~~c-~~~~s 126 (669)
T KOG2231|consen 76 EHEDTCVIFFADKLTYTKLEACLHH-SCHICDRRFRALYNKKECLHC-TEFKS 126 (669)
T ss_pred cccceeeeeeccccHHHHHHHHHhh-hcCccccchhhhcccCCCccc-cchhH
Confidence 55668999954 4444666788888 8999987753 345678888 55444
No 159
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=28.57 E-value=36 Score=32.18 Aligned_cols=31 Identities=23% Similarity=0.726 Sum_probs=27.2
Q ss_pred CCccccccccCCCccEEecCC--CcccCHHHHHH
Q 023674 219 SGKECVICLSEPRDTTVLPCR--HMCMCSECAKV 250 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCg--H~~~C~~C~~~ 250 (279)
....|..|.+....+.+++|. |. .|.+|...
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr~ 252 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHV-TCLDCFRL 252 (446)
T ss_pred ccceeEEecCCccceEEEecCCcee-ehHHhhhh
Confidence 456899999999999999998 99 99999874
No 160
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=28.33 E-value=39 Score=26.26 Aligned_cols=26 Identities=31% Similarity=0.815 Sum_probs=18.4
Q ss_pred cCHHHHHHHHhc----CCCCccccccccce
Q 023674 243 MCSECAKVLQFQ----TNRCPICRQPVERL 268 (279)
Q Consensus 243 ~C~~C~~~l~~~----~~~CPiCR~~i~~~ 268 (279)
+|..|...|... ...||.|+.++.--
T Consensus 64 iCGvC~~~LT~~EY~~~~~Cp~C~spFNp~ 93 (105)
T COG4357 64 ICGVCRKLLTRAEYGMCGSCPYCQSPFNPG 93 (105)
T ss_pred EhhhhhhhhhHHHHhhcCCCCCcCCCCCcc
Confidence 577777766432 46799999988653
No 161
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.13 E-value=35 Score=32.95 Aligned_cols=42 Identities=19% Similarity=0.457 Sum_probs=28.3
Q ss_pred CCccccccccCC-----CccEEecCCCcccCHHHHHHHHhcCCCCccc
Q 023674 219 SGKECVICLSEP-----RDTTVLPCRHMCMCSECAKVLQFQTNRCPIC 261 (279)
Q Consensus 219 ~~~~C~IC~~~~-----~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiC 261 (279)
..+.|..|.... .+-+.--|||. ||+.|...|......|..|
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~-fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQ-FCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeecccc-chhhcCcchhhCCccccCc
Confidence 356788887432 22333349999 9999999998776666444
No 162
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=27.01 E-value=2.4 Score=37.54 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=32.1
Q ss_pred CCCccccccccCCCcc-EEecCCCcccCHHHHHHHHhcCCCCcccccc
Q 023674 218 DSGKECVICLSEPRDT-TVLPCRHMCMCSECAKVLQFQTNRCPICRQP 264 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~-~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~ 264 (279)
++-..|.+|..-.... .--.|+=. +...|......+...||-|..-
T Consensus 179 dnlk~Cn~Ch~LvIqg~rCg~c~i~-~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 179 DNLKNCNLCHCLVIQGIRCGSCNIQ-YHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHHHHhHhHHHhheeeccCcccch-hhhHHHHHHhcccCcCCchhcc
Confidence 4567899998765433 33456655 6788888876667889999543
No 163
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=26.49 E-value=41 Score=31.87 Aligned_cols=43 Identities=21% Similarity=0.670 Sum_probs=31.6
Q ss_pred CccccccccCCCccE---EecCCCcccCHHHHHHHHhcCCCCccccc
Q 023674 220 GKECVICLSEPRDTT---VLPCRHMCMCSECAKVLQFQTNRCPICRQ 263 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~---~lPCgH~~~C~~C~~~l~~~~~~CPiCR~ 263 (279)
...|-.|.++..+.- ---|.+. ||.+|-.-+...-..||-|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNV-FCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccce-eeccchHHHHhhhhcCCCcCC
Confidence 345999976665532 2358899 999998877666678999963
No 164
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=25.05 E-value=51 Score=31.52 Aligned_cols=27 Identities=22% Similarity=0.572 Sum_probs=17.2
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHH
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECA 248 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~ 248 (279)
+.+.+|.||-++..---. |-+ .|..|-
T Consensus 13 dl~ElCPVCGDkVSGYHY---GLL-TCESCK 39 (475)
T KOG4218|consen 13 DLGELCPVCGDKVSGYHY---GLL-TCESCK 39 (475)
T ss_pred ccccccccccCcccccee---eee-ehhhhh
Confidence 446789999998776422 222 577773
No 165
>PHA03211 serine/threonine kinase US3; Provisional
Probab=24.74 E-value=90 Score=30.65 Aligned_cols=14 Identities=14% Similarity=0.347 Sum_probs=6.0
Q ss_pred eeEEEEEecCCCCc
Q 023674 118 QFLVAFTFDAAAPG 131 (279)
Q Consensus 118 ~y~l~F~fDa~~~~ 131 (279)
.|.|.-.+.....|
T Consensus 170 gy~i~~~Lg~G~~G 183 (461)
T PHA03211 170 GFAIHRALTPGSEG 183 (461)
T ss_pred CeEEEEEEccCCCe
Confidence 35544444433333
No 166
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=23.46 E-value=1e+02 Score=31.94 Aligned_cols=43 Identities=30% Similarity=0.700 Sum_probs=24.9
Q ss_pred CCCccccccccCCCccEEecCCCcccCH--HHHHH---HHhc----CCCCccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCS--ECAKV---LQFQ----TNRCPICRQPV 265 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~--~C~~~---l~~~----~~~CPiCR~~i 265 (279)
.-...|.|+..+. .+||++. .|. .|.+. +..+ ...||+|-..+
T Consensus 304 ~vSL~CPl~~~Rm----~~P~r~~-~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~ 355 (636)
T KOG2169|consen 304 RVSLNCPLSKMRM----SLPARGH-TCKHLQCFDALSYLQMNEQKPTWRCPVCQKAA 355 (636)
T ss_pred eeEecCCccccee----ecCCccc-ccccceecchhhhHHhccCCCeeeCccCCccc
Confidence 3456788876654 3465544 444 56554 3332 24699997754
No 167
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=23.15 E-value=46 Score=24.04 Aligned_cols=12 Identities=17% Similarity=0.415 Sum_probs=8.1
Q ss_pred ccCHHHHHHHHh
Q 023674 242 CMCSECAKVLQF 253 (279)
Q Consensus 242 ~~C~~C~~~l~~ 253 (279)
.||+.|+..|..
T Consensus 11 gFCRNCLskWy~ 22 (68)
T PF06844_consen 11 GFCRNCLSKWYR 22 (68)
T ss_dssp S--HHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 399999999864
No 168
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=22.53 E-value=31 Score=35.16 Aligned_cols=42 Identities=19% Similarity=0.524 Sum_probs=23.4
Q ss_pred CCCccccccccCCCccEE--------ecCCCcccCHHHHHHHHhcCCCCccccc
Q 023674 218 DSGKECVICLSEPRDTTV--------LPCRHMCMCSECAKVLQFQTNRCPICRQ 263 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~--------lPCgH~~~C~~C~~~l~~~~~~CPiCR~ 263 (279)
..+..|.+|..+...--+ .-|++. |+..|... .+..||.|-.
T Consensus 509 ~~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~av-fH~~C~~r---~s~~CPrC~R 558 (580)
T KOG1829|consen 509 GKGFICELCQHNDIIYPFETRNTRRCSTCLAV-FHKKCLRR---KSPCCPRCER 558 (580)
T ss_pred cCeeeeeeccCCCcccccccccceeHHHHHHH-HHHHHHhc---cCCCCCchHH
Confidence 566778888432221111 336666 66666443 3455999943
No 169
>PF10813 DUF2733: Protein of unknown function (DUF2733); InterPro: IPR024360 The UL11 gene product of herpes simplex virus is a membrane-associated tegument protein that is incorporated into the HSV virion and functions in viral envelopment []. UL11 is acylated, which is crucial for lipid raft association [].
Probab=21.88 E-value=39 Score=20.87 Aligned_cols=12 Identities=42% Similarity=0.587 Sum_probs=8.6
Q ss_pred CCCCCCC-CCCCC
Q 023674 1 MGNSGSH-RRHHS 12 (279)
Q Consensus 1 ~~~~~s~-~~~~~ 12 (279)
||+..|- +||++
T Consensus 1 MG~~~s~Ckrr~n 13 (32)
T PF10813_consen 1 MGSLLSMCKRRHN 13 (32)
T ss_pred CcceeeeeeccCC
Confidence 8888887 56655
No 170
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=40 Score=33.99 Aligned_cols=46 Identities=24% Similarity=0.732 Sum_probs=32.5
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
+....|.||+... ...+.+|.|. .|. ..|......||.|++.+..-
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~~~-~~l---~~~~~~~~~~pl~~~~~~~~ 522 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCSHA-LCL---RKWLYVQEVCPLCHTYMKED 522 (543)
T ss_pred cccCcchHHHHHH-Hhccccccch-hHH---HhhhhhccccCCCchhhhcc
Confidence 5567899999888 6666677755 444 44554457899999876543
No 171
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=21.44 E-value=76 Score=29.48 Aligned_cols=63 Identities=27% Similarity=0.459 Sum_probs=41.1
Q ss_pred hhhhhhhhcCCCCCCCCCCCCCccccccccCCCccEEecC------CCcccCHHHHHHHHhcCCCCccccc
Q 023674 199 RYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPC------RHMCMCSECAKVLQFQTNRCPICRQ 263 (279)
Q Consensus 199 ~y~l~e~~~~~~s~~~~~~~~~~~C~IC~~~~~~~~~lPC------gH~~~C~~C~~~l~~~~~~CPiCR~ 263 (279)
-|-.+...++.-+...+. +....|.||-+.+...++.-= |-+ -|.-|...|..-..+|--|-+
T Consensus 165 lyw~q~a~~i~~~~~~e~-e~~~~CPvCGS~PvaSmV~~g~~~~GlRYL-~CslC~teW~~VR~KC~nC~~ 233 (308)
T COG3058 165 LYWAQMAQGIPGKARVEN-ESRQYCPVCGSMPVASMVQIGETEQGLRYL-HCSLCETEWHYVRVKCSNCEQ 233 (308)
T ss_pred HHHHHHHhcCCccccccc-cccccCCCcCCCCcceeeeecCccccchhh-hhhhHHHHHHHHHHHhccccc
Confidence 344455555554444333 455689999999877554321 122 599999999877678888865
No 172
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=20.34 E-value=2.8e+02 Score=27.16 Aligned_cols=7 Identities=29% Similarity=0.861 Sum_probs=2.9
Q ss_pred Ccccccc
Q 023674 258 CPICRQP 264 (279)
Q Consensus 258 CPiCR~~ 264 (279)
|-.|+..
T Consensus 398 ~~~~~~~ 404 (409)
T KOG4590|consen 398 CGACGGE 404 (409)
T ss_pred hhhhhcc
Confidence 4444443
No 173
>PF12773 DZR: Double zinc ribbon
Probab=20.31 E-value=52 Score=21.54 Aligned_cols=25 Identities=24% Similarity=0.596 Sum_probs=14.3
Q ss_pred cCHHHHHHHH--h-cCCCCccccccccc
Q 023674 243 MCSECAKVLQ--F-QTNRCPICRQPVER 267 (279)
Q Consensus 243 ~C~~C~~~l~--~-~~~~CPiCR~~i~~ 267 (279)
||..|-..+. . ....|+.|...+..
T Consensus 14 fC~~CG~~l~~~~~~~~~C~~Cg~~~~~ 41 (50)
T PF12773_consen 14 FCPHCGTPLPPPDQSKKICPNCGAENPP 41 (50)
T ss_pred CChhhcCChhhccCCCCCCcCCcCCCcC
Confidence 6666665554 1 13457777766543
Done!