Query 023674
Match_columns 279
No_of_seqs 358 out of 1674
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:53:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023674.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023674hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vje_B MDM4 protein; proto-onc 99.6 2E-15 6.8E-20 107.3 4.4 56 218-273 5-62 (63)
2 2vje_A E3 ubiquitin-protein li 99.5 3.8E-15 1.3E-19 106.2 4.7 56 218-273 6-63 (64)
3 2ea5_A Cell growth regulator w 99.5 8.7E-15 3E-19 105.6 3.9 56 217-276 12-67 (68)
4 2y1n_A E3 ubiquitin-protein li 99.4 2.2E-13 7.6E-18 128.4 6.5 149 108-274 234-386 (389)
5 4ic3_A E3 ubiquitin-protein li 99.3 3.3E-13 1.1E-17 98.6 1.8 51 219-273 23-73 (74)
6 2yho_A E3 ubiquitin-protein li 99.3 4.2E-13 1.5E-17 99.5 1.8 54 219-276 17-70 (79)
7 2d8t_A Dactylidin, ring finger 99.3 2.5E-12 8.7E-17 92.7 4.2 49 218-267 13-61 (71)
8 2csy_A Zinc finger protein 183 99.3 4.8E-12 1.6E-16 93.5 5.5 52 217-269 12-63 (81)
9 2djb_A Polycomb group ring fin 99.2 8.8E-12 3E-16 90.1 5.6 50 218-268 13-63 (72)
10 2kiz_A E3 ubiquitin-protein li 99.2 8.6E-12 2.9E-16 89.2 5.1 52 217-269 11-65 (69)
11 1chc_A Equine herpes virus-1 r 99.2 5.3E-12 1.8E-16 89.9 3.9 55 218-273 3-58 (68)
12 2ecn_A Ring finger protein 141 99.2 3E-12 1E-16 91.9 2.6 54 218-273 13-66 (70)
13 2ea6_A Ring finger protein 4; 99.2 8.1E-12 2.8E-16 88.8 4.0 49 218-267 13-68 (69)
14 2ecg_A Baculoviral IAP repeat- 99.2 1.4E-12 4.7E-17 95.4 -0.2 50 220-273 25-74 (75)
15 2ect_A Ring finger protein 126 99.2 1.6E-11 5.6E-16 89.8 4.1 50 218-268 13-65 (78)
16 2l0b_A E3 ubiquitin-protein li 99.2 1.4E-11 4.8E-16 93.3 3.8 49 218-267 38-89 (91)
17 2xeu_A Ring finger protein 4; 99.2 1.2E-11 4.1E-16 86.7 3.2 48 219-267 2-56 (64)
18 2ecm_A Ring finger and CHY zin 99.2 1.6E-11 5.5E-16 83.7 3.5 48 219-267 4-55 (55)
19 2ysl_A Tripartite motif-contai 99.2 3.4E-11 1.1E-15 86.8 5.3 49 218-267 18-69 (73)
20 2ep4_A Ring finger protein 24; 99.1 1.8E-11 6.3E-16 88.6 3.1 54 218-272 13-69 (74)
21 2yur_A Retinoblastoma-binding 99.1 3.9E-11 1.3E-15 87.3 4.8 48 218-266 13-63 (74)
22 1iym_A EL5; ring-H2 finger, ub 99.1 2.4E-11 8.1E-16 82.9 3.2 48 218-266 3-54 (55)
23 4ayc_A E3 ubiquitin-protein li 99.1 2.4E-11 8.2E-16 98.9 3.4 49 219-268 52-100 (138)
24 3ng2_A RNF4, snurf, ring finge 99.1 2.2E-11 7.4E-16 87.3 2.7 49 218-267 8-63 (71)
25 1x4j_A Ring finger protein 38; 99.1 2.9E-11 9.9E-16 88.0 3.2 49 218-267 21-72 (75)
26 2ct2_A Tripartite motif protei 99.1 6.8E-11 2.3E-15 88.1 5.2 49 218-267 13-68 (88)
27 2ecy_A TNF receptor-associated 99.1 5.6E-11 1.9E-15 84.3 4.5 49 218-267 13-62 (66)
28 2ecw_A Tripartite motif-contai 99.1 1.4E-10 4.8E-15 85.4 5.8 49 218-267 17-71 (85)
29 2egp_A Tripartite motif-contai 99.1 3.3E-11 1.1E-15 88.1 1.8 49 218-267 10-65 (79)
30 3ztg_A E3 ubiquitin-protein li 99.0 1.8E-10 6.1E-15 86.8 5.0 47 218-265 11-60 (92)
31 2ysj_A Tripartite motif-contai 99.0 3.5E-10 1.2E-14 79.3 5.8 43 218-261 18-63 (63)
32 2ecv_A Tripartite motif-contai 99.0 1.7E-10 5.8E-15 85.0 4.2 49 218-267 17-71 (85)
33 2ecj_A Tripartite motif-contai 99.0 2.8E-10 9.4E-15 78.2 4.4 43 218-261 13-58 (58)
34 1t1h_A Gspef-atpub14, armadill 99.0 3.3E-10 1.1E-14 82.7 4.8 49 218-267 6-55 (78)
35 3lrq_A E3 ubiquitin-protein li 99.0 1.6E-10 5.3E-15 89.0 2.2 49 218-267 20-70 (100)
36 2ecl_A Ring-box protein 2; RNF 99.0 3.9E-10 1.3E-14 83.6 4.2 48 219-267 14-76 (81)
37 3t6p_A Baculoviral IAP repeat- 99.0 1.1E-10 3.7E-15 108.9 1.1 52 218-273 293-344 (345)
38 2ckl_A Polycomb group ring fin 98.9 4.5E-10 1.5E-14 87.3 4.1 49 218-267 13-62 (108)
39 3fl2_A E3 ubiquitin-protein li 98.9 3E-10 1E-14 90.5 2.8 49 218-267 50-99 (124)
40 2y43_A E3 ubiquitin-protein li 98.9 3.2E-10 1.1E-14 86.7 2.7 48 219-267 21-69 (99)
41 1v87_A Deltex protein 2; ring- 98.9 5.3E-10 1.8E-14 87.5 3.7 47 220-267 25-94 (114)
42 1g25_A CDK-activating kinase a 98.9 6.1E-10 2.1E-14 78.6 2.9 47 220-267 3-55 (65)
43 4ap4_A E3 ubiquitin ligase RNF 98.9 8.5E-10 2.9E-14 87.7 4.0 56 218-274 5-69 (133)
44 1e4u_A Transcriptional repress 98.9 8.1E-10 2.8E-14 81.6 3.5 52 218-270 9-65 (78)
45 3l11_A E3 ubiquitin-protein li 98.9 3.2E-10 1.1E-14 89.1 1.0 49 218-267 13-62 (115)
46 1bor_A Transcription factor PM 98.9 2.5E-10 8.4E-15 78.7 0.3 45 218-266 4-48 (56)
47 1jm7_A BRCA1, breast cancer ty 98.9 5.2E-10 1.8E-14 87.0 1.9 47 220-267 21-70 (112)
48 1z6u_A NP95-like ring finger p 98.9 7.7E-10 2.6E-14 91.5 2.8 49 219-268 77-126 (150)
49 3hct_A TNF receptor-associated 98.8 1.2E-09 4E-14 86.4 3.0 49 218-267 16-65 (118)
50 2ckl_B Ubiquitin ligase protei 98.8 1E-09 3.5E-14 91.6 2.1 49 218-267 52-102 (165)
51 3dpl_R Ring-box protein 1; ubi 98.8 3.8E-09 1.3E-13 82.4 4.7 46 220-266 37-100 (106)
52 2kre_A Ubiquitin conjugation f 98.8 3.6E-09 1.2E-13 81.7 4.0 49 218-267 27-75 (100)
53 1rmd_A RAG1; V(D)J recombinati 98.8 2.4E-09 8.1E-14 84.2 2.5 49 218-267 21-70 (116)
54 2kr4_A Ubiquitin conjugation f 98.8 7.8E-09 2.7E-13 77.3 5.1 49 218-267 12-60 (85)
55 4ap4_A E3 ubiquitin ligase RNF 98.7 3.6E-09 1.2E-13 84.0 3.4 54 218-272 70-132 (133)
56 1wgm_A Ubiquitin conjugation f 98.7 1.2E-08 4E-13 78.5 5.1 49 218-267 20-69 (98)
57 2d8s_A Cellular modulator of i 98.7 8.9E-09 3E-13 76.3 3.2 51 218-269 13-72 (80)
58 3knv_A TNF receptor-associated 98.7 4.8E-09 1.7E-13 85.8 1.8 47 218-265 29-76 (141)
59 1jm7_B BARD1, BRCA1-associated 98.6 4.7E-09 1.6E-13 82.8 -0.4 45 219-266 21-66 (117)
60 4a0k_B E3 ubiquitin-protein li 98.6 8.6E-09 2.9E-13 81.8 0.5 46 220-266 48-111 (117)
61 2c2l_A CHIP, carboxy terminus 98.6 3.8E-08 1.3E-12 87.6 4.7 49 218-267 206-255 (281)
62 3hcs_A TNF receptor-associated 98.5 3.2E-08 1.1E-12 82.7 3.0 49 218-267 16-65 (170)
63 2yu4_A E3 SUMO-protein ligase 98.4 1.8E-07 6.1E-12 71.0 3.2 46 218-264 5-59 (94)
64 2f42_A STIP1 homology and U-bo 98.3 1.9E-07 6.5E-12 79.3 2.7 49 218-267 104-153 (179)
65 2ct0_A Non-SMC element 1 homol 98.1 3.4E-06 1.2E-10 61.4 5.8 51 216-267 11-64 (74)
66 1vyx_A ORF K3, K3RING; zinc-bi 98.1 1.4E-06 4.9E-11 60.8 3.1 49 218-266 4-58 (60)
67 3vk6_A E3 ubiquitin-protein li 98.0 5.3E-06 1.8E-10 63.4 4.6 51 222-273 3-55 (101)
68 2bay_A PRE-mRNA splicing facto 98.0 2.9E-06 9.9E-11 59.4 2.7 48 220-268 3-51 (61)
69 3htk_C E3 SUMO-protein ligase 98.0 3.9E-06 1.3E-10 75.0 3.9 48 218-266 179-231 (267)
70 1wim_A KIAA0161 protein; ring 97.9 3.7E-06 1.3E-10 63.4 2.1 45 219-264 4-61 (94)
71 3k1l_B Fancl; UBC, ring, RWD, 97.7 1.2E-05 4.2E-10 74.4 1.9 51 217-268 305-374 (381)
72 3bux_B E3 ubiquitin-protein li 96.7 0.00037 1.3E-08 63.3 0.8 69 108-181 258-326 (329)
73 3op0_A Signal transduction pro 96.7 0.0004 1.4E-08 62.8 0.9 72 108-184 243-314 (323)
74 2ko5_A Ring finger protein Z; 95.7 0.002 6.7E-08 48.5 0.1 50 221-273 29-79 (99)
75 3nw0_A Non-structural maintena 94.4 0.033 1.1E-06 48.9 4.4 48 219-267 179-229 (238)
76 2jun_A Midline-1; B-BOX, TRIM, 93.1 0.038 1.3E-06 41.4 2.0 31 220-251 3-36 (101)
77 2cs3_A Protein C14ORF4, MY039 92.9 0.089 3E-06 38.4 3.5 34 218-252 13-50 (93)
78 2d8v_A Zinc finger FYVE domain 81.5 0.71 2.4E-05 32.3 2.0 34 217-252 5-39 (67)
79 2zet_C Melanophilin; complex, 68.6 1.1 3.6E-05 36.6 0.1 45 219-264 67-117 (153)
80 1z60_A TFIIH basal transcripti 65.0 4.6 0.00016 27.5 2.7 40 221-261 16-58 (59)
81 1weo_A Cellulose synthase, cat 63.1 6.7 0.00023 29.0 3.5 49 218-267 14-70 (93)
82 2a20_A Regulating synaptic mem 62.9 0.25 8.5E-06 33.8 -3.9 20 218-241 7-27 (62)
83 3m62_A Ubiquitin conjugation f 55.4 8.9 0.0003 39.9 4.1 50 218-267 889-938 (968)
84 2lri_C Autoimmune regulator; Z 52.1 10 0.00034 26.2 2.7 46 218-264 10-59 (66)
85 3ql9_A Transcriptional regulat 49.2 12 0.00042 29.4 3.1 47 217-264 54-111 (129)
86 1zbd_B Rabphilin-3A; G protein 47.1 2.6 8.9E-05 33.5 -1.1 46 218-264 53-107 (134)
87 3i2d_A E3 SUMO-protein ligase 41.1 13 0.00046 34.4 2.5 46 219-265 248-298 (371)
88 2fiy_A Protein FDHE homolog; F 39.1 5.1 0.00017 36.3 -0.7 46 218-264 180-231 (309)
89 2lbm_A Transcriptional regulat 36.0 28 0.00097 27.7 3.4 47 217-264 60-117 (142)
90 3iot_A Maltose-binding protein 34.7 8.2 0.00028 35.6 0.0 33 15-55 404-436 (449)
91 4fo9_A E3 SUMO-protein ligase 33.3 20 0.0007 33.0 2.4 46 220-266 215-265 (360)
92 2pv0_B DNA (cytosine-5)-methyl 32.1 37 0.0013 31.6 3.9 53 216-269 89-154 (386)
93 1gu3_A Endoglucanase C; carboh 29.6 27 0.00092 27.8 2.3 36 99-138 44-79 (149)
94 1m3v_A FLIN4, fusion of the LI 27.3 42 0.0014 25.3 3.0 47 221-268 33-82 (122)
95 3a1b_A DNA (cytosine-5)-methyl 27.1 31 0.001 28.1 2.2 52 216-270 75-141 (159)
96 1wil_A KIAA1045 protein; ring 25.9 85 0.0029 22.9 4.1 33 218-251 13-47 (89)
97 2rgt_A Fusion of LIM/homeobox 24.9 67 0.0023 25.5 3.9 46 219-267 32-77 (169)
98 2csz_A Synaptotagmin-like prot 24.1 3.4 0.00012 29.7 -3.6 46 218-264 23-73 (76)
99 1mm2_A MI2-beta; PHD, zinc fin 23.9 13 0.00045 24.9 -0.5 47 217-264 6-56 (61)
100 2yw8_A RUN and FYVE domain-con 23.0 21 0.00072 25.4 0.4 32 218-250 17-52 (82)
101 2ptt_B Natural killer cell rec 21.2 1.3E+02 0.0046 22.8 4.6 44 94-137 62-108 (112)
102 3p6b_A Cellulose 1,4-beta-cell 21.1 77 0.0026 26.5 3.7 36 100-139 91-126 (205)
103 3u5n_A E3 ubiquitin-protein li 20.6 14 0.00049 30.9 -1.1 47 217-265 4-55 (207)
104 1wfk_A Zinc finger, FYVE domai 20.6 27 0.00093 25.3 0.6 32 218-250 7-42 (88)
No 1
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.56 E-value=2e-15 Score=107.30 Aligned_cols=56 Identities=27% Similarity=0.730 Sum_probs=51.6
Q ss_pred CCCccccccccCCCccEEe--cCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 218 DSGKECVICLSEPRDTTVL--PCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~l--PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
+...+|.||+++.++++++ ||||+++|.+|+..|+.+..+||+||+.|..+++|++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 4567899999999999888 9999999999999998888899999999999999986
No 2
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.54 E-value=3.8e-15 Score=106.16 Aligned_cols=56 Identities=30% Similarity=0.768 Sum_probs=51.8
Q ss_pred CCCccccccccCCCccEEe--cCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 218 DSGKECVICLSEPRDTTVL--PCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~l--PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
+++.+|+||+++.++++++ ||||+++|.+|+..|+.+...||+||+.|..+++|++
T Consensus 6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 3457899999999999988 9999999999999999888899999999999999986
No 3
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=8.7e-15 Score=105.63 Aligned_cols=56 Identities=34% Similarity=0.927 Sum_probs=50.2
Q ss_pred CCCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEecCCC
Q 023674 217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNA 276 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~~~~ 276 (279)
+++..+|+||+++.++++++||||++||..|+..+ ..||+||+.|...++|+..++
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~~~s 67 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSGPSS 67 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCSSCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeecCCC
Confidence 36678999999999999999999999999999954 699999999999999987653
No 4
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.40 E-value=2.2e-13 Score=128.39 Aligned_cols=149 Identities=22% Similarity=0.458 Sum_probs=93.2
Q ss_pred eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCce-ecCCCCCCCC--CChhh
Q 023674 108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQK-FRQPCGTGID--LSMFD 184 (279)
Q Consensus 108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~-F~~~sg~~id--~~~~~ 184 (279)
+|....+.+|.|. |+++++..|.+.+.|........+++....+.++. +..+..+. |..++|...+ ++...
T Consensus 234 ~Lk~~~~~~GsYI--fRls~trlGq~~LG~v~~~q~ivqti~~~ksl~~~----l~d~~~~g~yl~p~g~~~~p~l~~l~ 307 (389)
T 2y1n_A 234 RLQKFIHKPGSYI--FRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQA----LIDGFREGFYLFPDGRNQNPDLTGLC 307 (389)
T ss_dssp HHGGGTTSTTEEE--EEECSSSTTSEEEEEECTTSCEEEECCCSSCHHHH----HHHHHHTTSSCEETTCSCCCCCTTTT
T ss_pred HHHHhhccCCceE--eccCcchHhHHHHHHHHHHHHHHHHHHhHHHHHHH----HhhhcccCccccCCCCcCCccccccc
Confidence 3333445689999 89999999999999998877666666655554442 11122221 2333333222 22111
Q ss_pred hHhhhhhheeeccchhhhhhhhcCCCCCCCCCCCCCccccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccccc
Q 023674 185 EIALTKQILWVNRVRYELQEIYGIGSTVAGDETDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQ 263 (279)
Q Consensus 185 ~~e~lkq~i~~~~~~y~l~e~~~~~~s~~~~~~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~ 263 (279)
+.. ..+.+.+....++.... ..+...+|.||++...++++++|||. ||..|+..|.. ....||+||+
T Consensus 308 ~~~-~~~~i~ls~e~~~~~~e----------~~~~~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~ 375 (389)
T 2y1n_A 308 EPT-PQDHIKVTQEQYELYCE----------MGSTFQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRC 375 (389)
T ss_dssp C--------CCCHHHHHHHHH----------TTTSSSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCC
T ss_pred ccc-ccccccccHHHHHHHHh----------hcCCCCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCC
Confidence 111 01122222222221111 11234689999999999999999999 99999999987 5788999999
Q ss_pred cccceEEEecC
Q 023674 264 PVERLLEIKVN 274 (279)
Q Consensus 264 ~i~~~~~i~~~ 274 (279)
.|.....|.++
T Consensus 376 ~i~~~~~i~v~ 386 (389)
T 2y1n_A 376 EIKGTEPIVVD 386 (389)
T ss_dssp BCCEEEECSCC
T ss_pred ccCCceeEecC
Confidence 99988777665
No 5
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.32 E-value=3.3e-13 Score=98.61 Aligned_cols=51 Identities=27% Similarity=0.773 Sum_probs=47.2
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
++.+|.||++..++++++||||.+||..|+..| ..||+||+.|...++|++
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKILM 73 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECBC
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEee
Confidence 356899999999999999999999999999988 699999999999999876
No 6
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.30 E-value=4.2e-13 Score=99.48 Aligned_cols=54 Identities=33% Similarity=0.795 Sum_probs=48.8
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEecCCC
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKVNNA 276 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~~~~ 276 (279)
++.+|.||++..++++++||||.+||..|+..|+ .||+||+.|...+++++..+
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~p~~ 70 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYLPTH 70 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBCTTC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEeCcc
Confidence 3468999999999999999999999999999873 99999999999999987653
No 7
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.5e-12 Score=92.72 Aligned_cols=49 Identities=35% Similarity=0.799 Sum_probs=45.2
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
.++.+|.||++...+.++++|||. ||..|+..|......||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 567789999999999999999999 9999999998888899999998864
No 8
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=4.8e-12 Score=93.52 Aligned_cols=52 Identities=33% Similarity=0.664 Sum_probs=46.6
Q ss_pred CCCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceE
Q 023674 217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 269 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~ 269 (279)
.++..+|.||++...+.++++|||. ||..|+..|......||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 3567799999999999999999999 999999999988889999999987544
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.8e-12 Score=90.09 Aligned_cols=50 Identities=30% Similarity=0.611 Sum_probs=45.2
Q ss_pred CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
++...|.||++...+.+++ +|||. ||..|+..|......||+||+.|...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 5678999999999998887 99999 99999999998888999999988753
No 10
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.22 E-value=8.6e-12 Score=89.18 Aligned_cols=52 Identities=37% Similarity=0.811 Sum_probs=44.4
Q ss_pred CCCCccccccccCC---CccEEecCCCcccCHHHHHHHHhcCCCCccccccccceE
Q 023674 217 TDSGKECVICLSEP---RDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLL 269 (279)
Q Consensus 217 ~~~~~~C~IC~~~~---~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~ 269 (279)
+++..+|.||++.. ..+++++|||. ||..|+..|.....+||+||..|...+
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 35667899998876 45688999999 999999999988889999999987644
No 11
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.22 E-value=5.3e-12 Score=89.94 Aligned_cols=55 Identities=33% Similarity=0.805 Sum_probs=47.8
Q ss_pred CCCccccccccCCCc-cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 218 DSGKECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~-~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
+++.+|.||++...+ +++++|||. ||..|+..|..+..+||+||+.+...++...
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 58 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTIE 58 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence 345789999999998 588999999 9999999999888999999999987765543
No 12
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=3e-12 Score=91.86 Aligned_cols=54 Identities=31% Similarity=0.736 Sum_probs=47.7
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
.+..+|.||++...+ ++++|||. ||..|+..|......||+||+.|.....+++
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 556799999999999 88999999 9999999998888899999999987665544
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=8.1e-12 Score=88.82 Aligned_cols=49 Identities=27% Similarity=0.716 Sum_probs=43.8
Q ss_pred CCCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
.+..+|.||++...+. ++++|||. ||..|+..|......||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 5677899999988776 88999999 9999999999888899999998763
No 14
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-12 Score=95.42 Aligned_cols=50 Identities=28% Similarity=0.779 Sum_probs=45.3
Q ss_pred CccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
..+|.||++..++++++||||.+||..|+..+ ..||+||+.|...++|++
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEec
Confidence 46899999999999999999999999999754 689999999999888875
No 15
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.16 E-value=1.6e-11 Score=89.80 Aligned_cols=50 Identities=30% Similarity=0.694 Sum_probs=43.2
Q ss_pred CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
.+..+|.||++...+ +++++|+|. ||..|+..|.....+||+||+.|...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 667899999887653 467899999 99999999998888999999998764
No 16
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=93.33 Aligned_cols=49 Identities=31% Similarity=0.653 Sum_probs=43.4
Q ss_pred CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
+++..|.||++...+ ++.++|||. ||..|+..|......||+||..|..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456789999988776 788999999 9999999999888999999998764
No 17
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.16 E-value=1.2e-11 Score=86.65 Aligned_cols=48 Identities=27% Similarity=0.716 Sum_probs=42.9
Q ss_pred CCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 219 SGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
++.+|.||++...+. ++++|||. ||.+|+..|..+..+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCc
Confidence 356899999988765 88999999 9999999999888899999999874
No 18
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.15 E-value=1.6e-11 Score=83.68 Aligned_cols=48 Identities=31% Similarity=0.794 Sum_probs=42.4
Q ss_pred CCccccccccCCCc----cEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 219 SGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
++.+|.||++...+ +++++|||. ||..|+..|.....+||+||+.|.+
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 45789999998865 788999999 9999999999888999999998753
No 19
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.4e-11 Score=86.81 Aligned_cols=49 Identities=24% Similarity=0.666 Sum_probs=43.3
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHh---cCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---QTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~---~~~~CPiCR~~i~~ 267 (279)
++..+|.||++...+.++++|||. ||..|+..|.. ....||+||+.|..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 567799999999999999999999 99999999986 34589999998753
No 20
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=1.8e-11 Score=88.61 Aligned_cols=54 Identities=24% Similarity=0.637 Sum_probs=46.0
Q ss_pred CCCccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEe
Q 023674 218 DSGKECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIK 272 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~ 272 (279)
+++.+|.||++...+ +++++|+|. ||..|+..|.....+||+||..|..+..+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQLS 69 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSCC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccccC
Confidence 556789999998754 566799999 999999999988889999999998776554
No 21
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.13 E-value=3.9e-11 Score=87.26 Aligned_cols=48 Identities=29% Similarity=0.731 Sum_probs=43.0
Q ss_pred CCCccccccccCCCccEEec-CCCcccCHHHHHHHHhcC--CCCcccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT--NRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~--~~CPiCR~~i~ 266 (279)
.++..|.||++...+.++++ |||. ||..|+..|.... ..||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 56789999999999999999 9999 9999999998765 68999999754
No 22
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.12 E-value=2.4e-11 Score=82.89 Aligned_cols=48 Identities=40% Similarity=0.877 Sum_probs=42.0
Q ss_pred CCCccccccccCCCc---cEEec-CCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 218 DSGKECVICLSEPRD---TTVLP-CRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~---~~~lP-CgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
+++.+|.||++...+ ++.++ |||. ||..|+..|.....+||+||+.|.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 345789999999877 77887 9999 999999999988899999998763
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.11 E-value=2.4e-11 Score=98.87 Aligned_cols=49 Identities=29% Similarity=0.676 Sum_probs=44.9
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
++..|.||++...+.++++|||. ||..|+..|+....+||+||..|...
T Consensus 52 ~~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 52 NELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HHSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred ccCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 34679999999999999999998 99999999998889999999998764
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.11 E-value=2.2e-11 Score=87.26 Aligned_cols=49 Identities=27% Similarity=0.716 Sum_probs=43.8
Q ss_pred CCCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
+++.+|.||++...+. ++++|||. ||..|+..|..+..+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 4567899999988776 89999999 9999999999888999999998864
No 25
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.11 E-value=2.9e-11 Score=87.95 Aligned_cols=49 Identities=29% Similarity=0.702 Sum_probs=42.5
Q ss_pred CCCccccccccCCCcc---EEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDT---TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~---~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
+++.+|.||++...+. ++++|+|. ||..|+..|.....+||+||+.|..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 4567899999887654 78999999 9999999999888999999998754
No 26
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=6.8e-11 Score=88.07 Aligned_cols=49 Identities=29% Similarity=0.707 Sum_probs=43.4
Q ss_pred CCCccccccccCCCc----cEEecCCCcccCHHHHHHHHhcC---CCCccccccccc
Q 023674 218 DSGKECVICLSEPRD----TTVLPCRHMCMCSECAKVLQFQT---NRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~----~~~lPCgH~~~C~~C~~~l~~~~---~~CPiCR~~i~~ 267 (279)
.+..+|.||++...+ .++++|||. ||..|+..|.... ..||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 567899999999998 899999999 9999999998765 789999997753
No 27
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=5.6e-11 Score=84.28 Aligned_cols=49 Identities=18% Similarity=0.537 Sum_probs=43.3
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHh-cCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF-QTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~-~~~~CPiCR~~i~~ 267 (279)
.+...|.||++..++.++++|||. ||..|+..|.. ...+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 567889999999999988999999 99999999984 45689999998764
No 28
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.07 E-value=1.4e-10 Score=85.44 Aligned_cols=49 Identities=27% Similarity=0.674 Sum_probs=44.1
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc------CCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ------TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~------~~~CPiCR~~i~~ 267 (279)
.+..+|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 556799999999999999999999 999999998876 5689999998864
No 29
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.06 E-value=3.3e-11 Score=88.10 Aligned_cols=49 Identities=27% Similarity=0.645 Sum_probs=43.4
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc-------CCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-------TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-------~~~CPiCR~~i~~ 267 (279)
++..+|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 567899999999999999999999 999999998765 5689999998864
No 30
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.04 E-value=1.8e-10 Score=86.83 Aligned_cols=47 Identities=30% Similarity=0.759 Sum_probs=42.4
Q ss_pred CCCccccccccCCCccEEec-CCCcccCHHHHHHHHhcC--CCCccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT--NRCPICRQPV 265 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~--~~CPiCR~~i 265 (279)
.+...|.||++.+.+.++++ |||. ||..|+..|+... ..||+||..+
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred CcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 56789999999999999999 9999 9999999987643 5899999987
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=3.5e-10 Score=79.28 Aligned_cols=43 Identities=26% Similarity=0.685 Sum_probs=38.8
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHh---cCCCCccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---QTNRCPIC 261 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~---~~~~CPiC 261 (279)
+++.+|.||++...+.++++|||. ||..|+..|.. ...+||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 567899999999999999999999 99999999987 34589998
No 32
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.7e-10 Score=85.00 Aligned_cols=49 Identities=27% Similarity=0.658 Sum_probs=44.0
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc------CCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ------TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~------~~~CPiCR~~i~~ 267 (279)
.+..+|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 566799999999999999999999 999999998776 6789999998874
No 33
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.8e-10 Score=78.18 Aligned_cols=43 Identities=23% Similarity=0.731 Sum_probs=38.1
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHh---cCCCCccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQF---QTNRCPIC 261 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~---~~~~CPiC 261 (279)
++...|.||++...+.++++|||. ||..|+..|+. ...+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 566799999999999999999999 99999999953 45789998
No 34
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.99 E-value=3.3e-10 Score=82.71 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=44.4
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
.+...|.||++...+.++++|||. ||..|+..|... ..+||+||+.+..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 456899999999999999999999 999999999876 6789999998864
No 35
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.96 E-value=1.6e-10 Score=88.99 Aligned_cols=49 Identities=27% Similarity=0.716 Sum_probs=43.8
Q ss_pred CCCccccccccCCCccEE-ecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~ 267 (279)
++...|.||++...+.++ ++|||. ||..|+..|+... ..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 345789999999999999 999999 9999999998877 689999998853
No 36
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.96 E-value=3.9e-10 Score=83.55 Aligned_cols=48 Identities=31% Similarity=0.636 Sum_probs=39.3
Q ss_pred CCccccccccCCCc--------------cEEe-cCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 219 SGKECVICLSEPRD--------------TTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~--------------~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
++..|.||++...+ ++++ .|+|. ||..|+..|..++.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 45568888887754 4455 49999 9999999999988999999998753
No 37
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.95 E-value=1.1e-10 Score=108.94 Aligned_cols=52 Identities=29% Similarity=0.856 Sum_probs=47.4
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
+++..|.||++...+++++||||.|||..|+..| ..||+||..|...++|++
T Consensus 293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTFL 344 (345)
T ss_dssp HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC-
T ss_pred cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEeec
Confidence 4567899999999999999999999999999987 589999999999999875
No 38
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.94 E-value=4.5e-10 Score=87.31 Aligned_cols=49 Identities=29% Similarity=0.624 Sum_probs=44.6
Q ss_pred CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
.+...|.||++...+.+.+ +|||. ||..|+..|......||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 3467899999999999988 99999 9999999999888899999999875
No 39
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.93 E-value=3e-10 Score=90.46 Aligned_cols=49 Identities=22% Similarity=0.545 Sum_probs=43.3
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~ 267 (279)
.+...|.||++...+.++++|||. ||..|+..|+... ..||+||..+..
T Consensus 50 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 50 EETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred ccCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 345789999999999999999999 9999999988754 489999999875
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.93 E-value=3.2e-10 Score=86.72 Aligned_cols=48 Identities=25% Similarity=0.567 Sum_probs=43.7
Q ss_pred CCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 219 SGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
+...|.||++...+.+++ +|||. ||..|+..|......||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999999888 89999 9999999999888899999998874
No 41
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.92 E-value=5.3e-10 Score=87.49 Aligned_cols=47 Identities=19% Similarity=0.548 Sum_probs=38.7
Q ss_pred CccccccccCCCc------------------cEEecCCCcccCHHHHHHHHh-----cCCCCccccccccc
Q 023674 220 GKECVICLSEPRD------------------TTVLPCRHMCMCSECAKVLQF-----QTNRCPICRQPVER 267 (279)
Q Consensus 220 ~~~C~IC~~~~~~------------------~~~lPCgH~~~C~~C~~~l~~-----~~~~CPiCR~~i~~ 267 (279)
+..|.||++.+.+ +.+++|+|. ||..|+..|.. ....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3589999998754 237899999 99999999983 45689999998764
No 42
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=6.1e-10 Score=78.59 Aligned_cols=47 Identities=28% Similarity=0.782 Sum_probs=38.4
Q ss_pred Ccccccccc-CCCcc----EEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 220 GKECVICLS-EPRDT----TVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 220 ~~~C~IC~~-~~~~~----~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
+..|.||++ ...+. ++++|||. ||..|+..|+.+ ...||+||..+..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 568999999 55443 57899999 999999999654 4679999999864
No 43
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.89 E-value=8.5e-10 Score=87.73 Aligned_cols=56 Identities=25% Similarity=0.645 Sum_probs=47.4
Q ss_pred CCCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc--eEEEecC
Q 023674 218 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIKVN 274 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~--~~~i~~~ 274 (279)
.+..+|.||++...+. ++++|||. ||..|+..|.....+||+||+.+.. +..++++
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCccccccccccC
Confidence 3467899999998876 99999999 9999999999888899999999874 4445544
No 44
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.88 E-value=8.1e-10 Score=81.55 Aligned_cols=52 Identities=25% Similarity=0.662 Sum_probs=41.7
Q ss_pred CCCccccccccCC--CccEEec--CCCcccCHHHHHHHHhc-CCCCccccccccceEE
Q 023674 218 DSGKECVICLSEP--RDTTVLP--CRHMCMCSECAKVLQFQ-TNRCPICRQPVERLLE 270 (279)
Q Consensus 218 ~~~~~C~IC~~~~--~~~~~lP--CgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~~~~ 270 (279)
+++..|.||++.. .+.+++| |||. ||..|+..++.. ...||+||+.+.....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence 5567899999987 4566776 9999 999999997643 4679999999876433
No 45
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.87 E-value=3.2e-10 Score=89.07 Aligned_cols=49 Identities=31% Similarity=0.698 Sum_probs=43.4
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
.++..|.||++...+.++++|||. ||..|+..|... ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 456789999999999999999999 999999998765 5689999998864
No 46
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=2.5e-10 Score=78.72 Aligned_cols=45 Identities=33% Similarity=0.766 Sum_probs=39.8
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
.+...|.||++...+.++++|||. ||..|+..| ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCc-ccHHHHccC---CCCCCcCCcEee
Confidence 556789999999999999999999 999998773 568999999875
No 47
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.86 E-value=5.2e-10 Score=86.99 Aligned_cols=47 Identities=30% Similarity=0.750 Sum_probs=41.9
Q ss_pred CccccccccCCCccEEecCCCcccCHHHHHHHHhcCC---CCccccccccc
Q 023674 220 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN---RCPICRQPVER 267 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~---~CPiCR~~i~~ 267 (279)
...|.||++...+.++++|||. ||..|+..|..... .||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 4689999999999999999999 99999999987653 89999998864
No 48
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.86 E-value=7.7e-10 Score=91.45 Aligned_cols=49 Identities=22% Similarity=0.502 Sum_probs=43.6
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCC-CCccccccccce
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPVERL 268 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~-~CPiCR~~i~~~ 268 (279)
+...|.||++...+.++++|||. ||..|+..|..... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45789999999999999999999 99999999987654 799999998753
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.83 E-value=1.2e-09 Score=86.41 Aligned_cols=49 Identities=29% Similarity=0.638 Sum_probs=44.0
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCC-CCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~-~CPiCR~~i~~ 267 (279)
++...|.||++...+.++++|||. ||..|+..|..... +||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 456799999999999999999999 99999999987654 89999998875
No 50
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.81 E-value=1e-09 Score=91.59 Aligned_cols=49 Identities=29% Similarity=0.670 Sum_probs=43.1
Q ss_pred CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
.+...|.||++...+.+.+ +|||. ||..|+..|... ...||+||..+..
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 3457899999999998887 99999 999999999876 6789999998853
No 51
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.79 E-value=3.8e-09 Score=82.43 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=38.9
Q ss_pred CccccccccCCCc------------------cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 220 GKECVICLSEPRD------------------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 220 ~~~C~IC~~~~~~------------------~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
+..|.||++.+.+ +++++|+|. ||..|+..|..+..+||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 4578888887653 466899999 999999999998899999999853
No 52
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.78 E-value=3.6e-09 Score=81.67 Aligned_cols=49 Identities=14% Similarity=0.061 Sum_probs=45.1
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
.+...|.||++-++|.++++|||. ||..|+..|+....+||+||..+..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 567899999999999999999999 9999999999877899999998864
No 53
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.76 E-value=2.4e-09 Score=84.15 Aligned_cols=49 Identities=27% Similarity=0.539 Sum_probs=43.7
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
.+...|.||++...+.+.++|||. ||..|+..|... ...||+||..+..
T Consensus 21 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 21 VKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 345789999999999999999999 999999999876 6789999998864
No 54
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.75 E-value=7.8e-09 Score=77.28 Aligned_cols=49 Identities=14% Similarity=0.038 Sum_probs=45.1
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
.+...|.||++-++|.++++|||. ||..|+..|+....+||+||+.+..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 467899999999999999999999 9999999998888899999998764
No 55
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.75 E-value=3.6e-09 Score=84.03 Aligned_cols=54 Identities=26% Similarity=0.647 Sum_probs=46.0
Q ss_pred CCCccccccccCCCcc-------EEecCCCcccCHHHHHHHHhcCCCCccccccccc--eEEEe
Q 023674 218 DSGKECVICLSEPRDT-------TVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER--LLEIK 272 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~-------~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~--~~~i~ 272 (279)
++..+|.||++...+. ++++|||. ||..|+..|.....+||+||..+.. +..++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 4567899999988775 88999999 9999999999999999999999874 44544
No 56
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.72 E-value=1.2e-08 Score=78.48 Aligned_cols=49 Identities=16% Similarity=0.054 Sum_probs=44.9
Q ss_pred CCCccccccccCCCccEEecCC-CcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCR-HMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCg-H~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
.++..|.||++-++|.++++|| |. ||..|+..|+....+||+||+.+..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4578999999999999999999 99 9999999999877889999998864
No 57
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=8.9e-09 Score=76.31 Aligned_cols=51 Identities=22% Similarity=0.495 Sum_probs=41.4
Q ss_pred CCCccccccccCC--CccEEecCC-----CcccCHHHHHHHHhcC--CCCccccccccceE
Q 023674 218 DSGKECVICLSEP--RDTTVLPCR-----HMCMCSECAKVLQFQT--NRCPICRQPVERLL 269 (279)
Q Consensus 218 ~~~~~C~IC~~~~--~~~~~lPCg-----H~~~C~~C~~~l~~~~--~~CPiCR~~i~~~~ 269 (279)
.++..|.||+++. .+.+++||+ |. |+.+|+..|...+ .+||+||..+....
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~ 72 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIMET 72 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence 5567899999865 356789996 99 9999999998765 48999999876443
No 58
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.67 E-value=4.8e-09 Score=85.77 Aligned_cols=47 Identities=21% Similarity=0.434 Sum_probs=42.0
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCC-CCccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTN-RCPICRQPV 265 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~-~CPiCR~~i 265 (279)
++...|.||++...+.+.++|||. ||..|+..|+.... .||+||..+
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 456789999999999999999999 99999999987654 899999975
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.59 E-value=4.7e-09 Score=82.78 Aligned_cols=45 Identities=29% Similarity=0.665 Sum_probs=40.7
Q ss_pred CCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 219 SGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
+...|.||++...+.+++ +|||. ||..|+..|.. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence 457899999999999998 99999 99999999875 68999999874
No 60
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.56 E-value=8.6e-09 Score=81.82 Aligned_cols=46 Identities=22% Similarity=0.394 Sum_probs=0.4
Q ss_pred CccccccccCCCc------------------cEEecCCCcccCHHHHHHHHhcCCCCcccccccc
Q 023674 220 GKECVICLSEPRD------------------TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVE 266 (279)
Q Consensus 220 ~~~C~IC~~~~~~------------------~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~ 266 (279)
+..|.||++...+ +++++|+|. ||..|+..|......||+||+.+.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 3579999988754 233689999 999999999988899999999753
No 61
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.56 E-value=3.8e-08 Score=87.56 Aligned_cols=49 Identities=12% Similarity=0.078 Sum_probs=43.5
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~ 267 (279)
.+...|.||++-++|.++++|||. ||..|+..|+..+ ..||+||..+..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 567899999999999999999999 9999999988764 449999998864
No 62
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.53 E-value=3.2e-08 Score=82.71 Aligned_cols=49 Identities=29% Similarity=0.643 Sum_probs=43.7
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~ 267 (279)
++...|.||++...+.+.++|||. ||..|+..|.... .+||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 456899999999999999999999 9999999987654 489999998875
No 63
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.36 E-value=1.8e-07 Score=71.03 Aligned_cols=46 Identities=22% Similarity=0.383 Sum_probs=40.1
Q ss_pred CCCccccccccCCCccEEec-CCCcccCHHHHHHHHhcC------CCCcc--cccc
Q 023674 218 DSGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT------NRCPI--CRQP 264 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~------~~CPi--CR~~ 264 (279)
.+...|.||++-+++.++++ |||. ||..|+..|+... .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 35678999999999999996 9999 9999999988653 48999 9865
No 64
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.32 E-value=1.9e-07 Score=79.30 Aligned_cols=49 Identities=12% Similarity=0.069 Sum_probs=43.6
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcC-CCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQT-NRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~-~~CPiCR~~i~~ 267 (279)
.+...|.||++-++|.++++|||. ||..|+..|+... .+||+||..+..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 567899999999999999999999 9999999988764 469999998864
No 65
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=3.4e-06 Score=61.43 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=41.3
Q ss_pred CCCCCccccccccCCCccEE-ecCCCcccCHHHHHHHHhcC--CCCccccccccc
Q 023674 216 ETDSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQFQT--NRCPICRQPVER 267 (279)
Q Consensus 216 ~~~~~~~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~~~~--~~CPiCR~~i~~ 267 (279)
..+...+|.||++....-.. .-|+|. |+..|+..|+... .+||+||+.+..
T Consensus 11 y~~~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 11 YPDAVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CSSSSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred ccCCCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34667799999998765433 379999 9999999998776 789999988764
No 66
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.11 E-value=1.4e-06 Score=60.78 Aligned_cols=49 Identities=18% Similarity=0.363 Sum_probs=39.1
Q ss_pred CCCccccccccCCCccEEecCCCc----ccCHHHHHHHHhc--CCCCcccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHM----CMCSECAKVLQFQ--TNRCPICRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~----~~C~~C~~~l~~~--~~~CPiCR~~i~ 266 (279)
++...|.||++...+..++||.+. .++..|+..|... +.+|++||..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 456789999988766678897652 2999999999864 568999998764
No 67
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.00 E-value=5.3e-06 Score=63.42 Aligned_cols=51 Identities=27% Similarity=0.682 Sum_probs=40.9
Q ss_pred cccccccCCCc-cEEecCCCcccCHHHHHHHHhc-CCCCccccccccceEEEec
Q 023674 222 ECVICLSEPRD-TTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 222 ~C~IC~~~~~~-~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~~~~i~~ 273 (279)
-|.+|---... ..++||.|. ||.+|+..|.++ .+.||.||..|..+-++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~ 55 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR 55 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEecc
Confidence 36667665554 467899998 999999998765 5789999999999887754
No 68
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.98 E-value=2.9e-06 Score=59.37 Aligned_cols=48 Identities=19% Similarity=0.221 Sum_probs=43.0
Q ss_pred CccccccccCCCccEEe-cCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 220 GKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 220 ~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
...|.||++-.+|.+++ +|||. |+++|+..|.....+||++++++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 46899999999999999 89999 99999999998777899999988653
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.97 E-value=3.9e-06 Score=74.98 Aligned_cols=48 Identities=19% Similarity=0.320 Sum_probs=41.5
Q ss_pred CCCccccccccCCCccEEe-cCCCcccCHHHHHHHHhcC--CCCcc--cccccc
Q 023674 218 DSGKECVICLSEPRDTTVL-PCRHMCMCSECAKVLQFQT--NRCPI--CRQPVE 266 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~l-PCgH~~~C~~C~~~l~~~~--~~CPi--CR~~i~ 266 (279)
.....|.||++.+++.+.. .|||. ||..|+..|+... ..||+ ||+.+.
T Consensus 179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 5667899999999999875 99999 9999999988654 46999 999765
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.90 E-value=3.7e-06 Score=63.36 Aligned_cols=45 Identities=24% Similarity=0.590 Sum_probs=34.4
Q ss_pred CCccccccccCCCccE--E-ecCCCcccCHHHHHHHHhc--------CCCCcc--cccc
Q 023674 219 SGKECVICLSEPRDTT--V-LPCRHMCMCSECAKVLQFQ--------TNRCPI--CRQP 264 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~--~-lPCgH~~~C~~C~~~l~~~--------~~~CPi--CR~~ 264 (279)
+...|.||++...+.. . .+|||. ||.+|+..++.. .-+||. ||..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 4568999999876532 2 379999 999999985532 136999 9987
No 71
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.66 E-value=1.2e-05 Score=74.36 Aligned_cols=51 Identities=18% Similarity=0.403 Sum_probs=39.1
Q ss_pred CCCCccccccccCCCc-cE-------EecCCCcccCHHHHHHHHhcC-----------CCCccccccccce
Q 023674 217 TDSGKECVICLSEPRD-TT-------VLPCRHMCMCSECAKVLQFQT-----------NRCPICRQPVERL 268 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~-~~-------~lPCgH~~~C~~C~~~l~~~~-----------~~CPiCR~~i~~~ 268 (279)
++...+|.||++...+ -. -..|+|. |+..|+..|.... +.||.||++|...
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s 374 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS 374 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence 3566799999987765 11 1369999 9999999997542 4699999988653
No 72
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=96.66 E-value=0.00037 Score=63.27 Aligned_cols=69 Identities=16% Similarity=0.372 Sum_probs=54.7
Q ss_pred eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCC
Q 023674 108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLS 181 (279)
Q Consensus 108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~ 181 (279)
+|.+..+.+|.|. |+|+|+..|+|+|.|+.+++...++|+.+++++|..--.+.+|. |..+.|.+.+++
T Consensus 258 ~L~~~~~kpGsYI--fR~ScTrlGqwAIgyV~~~~~I~qtip~nk~l~qal~dg~~eg~---ylyp~g~~~npd 326 (329)
T 3bux_B 258 RLQKFIHKPGSYI--FRLSCTRLGQWAIGYVTADGNILQTIPHNKPLFQALIDGFREGF---YLFPDGRNQNPD 326 (329)
T ss_dssp HHGGGTTSTTEEE--EEECSSSTTSEEEEEECTTSCEEEECCSSCCHHHHHHHHHHHTS---SCEETTCSCCCC
T ss_pred HHHHhcCCCCcEE--EEeccCccCceEEEEECCCCceeeeCCCCcHHHHHHHhccccce---EECCCCCCCCCC
Confidence 3444446799999 99999999999999999999999999999999887433344444 677888765544
No 73
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=96.65 E-value=0.0004 Score=62.78 Aligned_cols=72 Identities=14% Similarity=0.321 Sum_probs=56.0
Q ss_pred eEEeCCCCCCeeEEEEEecCCCCccEEEEEeeeecCcceeeeccccccCCceeeeccccCceecCCCCCCCCCChhh
Q 023674 108 RVEPDEENPGQFLVAFTFDAAAPGSITVAFFGKEDVDCTLIATKEELLKPVTITFQQGLGQKFRQPCGTGIDLSMFD 184 (279)
Q Consensus 108 rl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a~E~~~~~l~~~~~~~~~~~~~~~~~gl~Q~F~~~sg~~id~~~~~ 184 (279)
+|.+..+.+|.|+ |.|+|+..|+|+|.|+++++...++|+.++.++|..--...+|. |..+.|.+.++++-+
T Consensus 243 ~L~~~~~KpGsYI--fR~ScTrlGqwAIgYV~s~g~I~qtip~nk~l~qaL~dG~~eg~---ylyp~g~~~npdl~~ 314 (323)
T 3op0_A 243 RLQACRDKPGSYI--FRPSCTRLGQWAIGYVSSDGSILQTIPANKPLSQVLLEGQKDGF---YLYPDGKTHNPDLTE 314 (323)
T ss_dssp HTTGGGGSTTEEE--EEECSSSTTCEEEEEECTTSCEEEECCCSSCHHHHHHHHHHTTS---SCEETTCSCCCCCHH
T ss_pred HHHHhccCCCcEE--EEeccCccCceEEEEEcCCCceeecCCCCcHHHHHHHhccccce---eECCCCCcCCcCHHH
Confidence 3443446799999 99999999999999999999999999999998887332333343 788888877666544
No 74
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.66 E-value=0.002 Score=48.49 Aligned_cols=50 Identities=32% Similarity=0.767 Sum_probs=41.1
Q ss_pred ccccccccCCCccEEecCC-CcccCHHHHHHHHhcCCCCccccccccceEEEec
Q 023674 221 KECVICLSEPRDTTVLPCR-HMCMCSECAKVLQFQTNRCPICRQPVERLLEIKV 273 (279)
Q Consensus 221 ~~C~IC~~~~~~~~~lPCg-H~~~C~~C~~~l~~~~~~CPiCR~~i~~~~~i~~ 273 (279)
.-|..|+-+.+.. +-|. |. +|..|+..|...+..|+||..++-..|++..
T Consensus 29 ~nCKsCWf~~k~L--V~C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~~~~ 79 (99)
T 2ko5_A 29 QFCKSCWFENKGL--VECNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLRPSA 79 (99)
T ss_dssp CCCCSSCSCCSSE--EECSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSCTTT
T ss_pred ccChhhccccCCe--eeecchh-hHHHHHHHHHhhccCCcccCCcCCcceecCc
Confidence 4699999988854 3575 66 9999999999999999999998877666543
No 75
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.44 E-value=0.033 Score=48.88 Aligned_cols=48 Identities=25% Similarity=0.366 Sum_probs=37.8
Q ss_pred CCccccccccCCCccEEec-CCCcccCHHHHHHHHhcC--CCCccccccccc
Q 023674 219 SGKECVICLSEPRDTTVLP-CRHMCMCSECAKVLQFQT--NRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lP-CgH~~~C~~C~~~l~~~~--~~CPiCR~~i~~ 267 (279)
...+|.||.+-......-+ |+|. |+..|+..|.... .+||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 4678999998766554443 9999 9999999997654 489999987654
No 76
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=93.07 E-value=0.038 Score=41.38 Aligned_cols=31 Identities=26% Similarity=0.638 Sum_probs=25.9
Q ss_pred CccccccccC-CCccEE--ecCCCcccCHHHHHHH
Q 023674 220 GKECVICLSE-PRDTTV--LPCRHMCMCSECAKVL 251 (279)
Q Consensus 220 ~~~C~IC~~~-~~~~~~--lPCgH~~~C~~C~~~l 251 (279)
+..|.||.+. ..+++. +.|+|. ||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHHH
Confidence 4689999976 566666 899999 999999983
No 77
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.86 E-value=0.089 Score=38.38 Aligned_cols=34 Identities=26% Similarity=0.605 Sum_probs=28.9
Q ss_pred CCCccccccccCCCccEEecC----CCcccCHHHHHHHH
Q 023674 218 DSGKECVICLSEPRDTTVLPC----RHMCMCSECAKVLQ 252 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPC----gH~~~C~~C~~~l~ 252 (279)
.....|.+|.++..|+-|+-| .|. ||..|.+...
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~sI 50 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRESI 50 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCe-eeccccHHHH
Confidence 556789999999999988888 588 9999998743
No 78
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=81.50 E-value=0.71 Score=32.27 Aligned_cols=34 Identities=18% Similarity=0.475 Sum_probs=27.0
Q ss_pred CCCCccccccccCCCccEEecC-CCcccCHHHHHHHH
Q 023674 217 TDSGKECVICLSEPRDTTVLPC-RHMCMCSECAKVLQ 252 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~~~~lPC-gH~~~C~~C~~~l~ 252 (279)
+++...|+||.+. ....-+-| +-+ ||..|.+.+.
T Consensus 5 ~ee~pWC~ICneD-AtlrC~gCdgDL-YC~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED-ATLRCAGCDGDL-YCARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC-CCEEETTTTSEE-ECSSHHHHHT
T ss_pred CcCCCeeEEeCCC-CeEEecCCCCce-ehHHHHHHHc
Confidence 3567899999998 55666788 666 9999998875
No 79
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=68.64 E-value=1.1 Score=36.61 Aligned_cols=45 Identities=22% Similarity=0.557 Sum_probs=29.4
Q ss_pred CCccccccccCCC-----ccEEecCCCcccCHHHHHHHHhc-CCCCcccccc
Q 023674 219 SGKECVICLSEPR-----DTTVLPCRHMCMCSECAKVLQFQ-TNRCPICRQP 264 (279)
Q Consensus 219 ~~~~C~IC~~~~~-----~~~~lPCgH~~~C~~C~~~l~~~-~~~CPiCR~~ 264 (279)
++..|.+|...+. -.+-.-|.|. +|..|....... .-.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLF-VCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCE-ECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCch-hhcccccccCCCCcEeeHHHHHH
Confidence 5689999998743 2344568888 899997432211 2347777653
No 80
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=64.95 E-value=4.6 Score=27.50 Aligned_cols=40 Identities=28% Similarity=0.747 Sum_probs=31.0
Q ss_pred ccccccccCCCccEEe---cCCCcccCHHHHHHHHhcCCCCccc
Q 023674 221 KECVICLSEPRDTTVL---PCRHMCMCSECAKVLQFQTNRCPIC 261 (279)
Q Consensus 221 ~~C~IC~~~~~~~~~l---PCgH~~~C~~C~~~l~~~~~~CPiC 261 (279)
..|..|.....+.... -|++. ||.+|-.-+...-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCC
Confidence 4699999888665433 47888 9999987766666789988
No 81
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=63.14 E-value=6.7 Score=28.99 Aligned_cols=49 Identities=27% Similarity=0.564 Sum_probs=34.7
Q ss_pred CCCccccccccCCCcc----EEec---CCCcccCHHHHHHHHhc-CCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDT----TVLP---CRHMCMCSECAKVLQFQ-TNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~----~~lP---CgH~~~C~~C~~~l~~~-~~~CPiCR~~i~~ 267 (279)
.....|.||-+..-.+ +|.- |+-- +|+.|..--+.. +..||-|.+...+
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FP-vCrpCyEYErkeG~q~CpqCktrYkr 70 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACNECGFP-ACRPCYEYERREGTQNCPQCKTRYKR 70 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCSSSCCC-CCHHHHHHHHHTSCSSCTTTCCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeeeccCCh-hhHHHHHHHHhccCccccccCCcccc
Confidence 3557899999874321 4444 4444 799999976655 4679999998764
No 82
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=62.88 E-value=0.25 Score=33.84 Aligned_cols=20 Identities=30% Similarity=0.617 Sum_probs=13.7
Q ss_pred CCCcccccccc-CCCccEEecCCCc
Q 023674 218 DSGKECVICLS-EPRDTTVLPCRHM 241 (279)
Q Consensus 218 ~~~~~C~IC~~-~~~~~~~lPCgH~ 241 (279)
++...|.||+. .+.|- |||.
T Consensus 7 ~d~~~C~iC~KTKFADG----~Gh~ 27 (62)
T 2a20_A 7 GDAPTCGICHKTKFADG----CGHN 27 (62)
T ss_dssp SCCCCCSSSSCSCCCSS----CCEE
T ss_pred CCcchhhhhccceeccC----CCcc
Confidence 45678999995 45553 6765
No 83
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=55.36 E-value=8.9 Score=39.89 Aligned_cols=50 Identities=16% Similarity=0.190 Sum_probs=44.4
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
-+...|.|-++-.+|.++++.||..+=+.++.+|.....+||+=|+++..
T Consensus 889 P~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 889 PDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred cHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 45788999999999999999986449999999999888899999998864
No 84
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=52.06 E-value=10 Score=26.16 Aligned_cols=46 Identities=17% Similarity=0.327 Sum_probs=28.9
Q ss_pred CCCccccccccCCCccEEecCCCcccCHHHHHHHHhc----CCCCcccccc
Q 023674 218 DSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQ----TNRCPICRQP 264 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~----~~~CPiCR~~ 264 (279)
..+..|.||.+...-+.---|... |+..|+.-.... .-.|+.|+..
T Consensus 10 ~~~~~C~vC~~~~~ll~Cd~C~~~-~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDGTDVLRCTHCAAA-FHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCCTTCEECSSSCCE-ECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCCCeEEECCCCCCc-eecccCCCccCcCCCCCEECccccCC
Confidence 455689999865432222246665 999998642222 2479999764
No 85
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=49.16 E-value=12 Score=29.39 Aligned_cols=47 Identities=17% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCCCccccccccCCCccEEecCCCcccCHHHHHHH------H-----hcCCCCcccccc
Q 023674 217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVL------Q-----FQTNRCPICRQP 264 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l------~-----~~~~~CPiCR~~ 264 (279)
+..+..|.||.+.-.-+.---|-.. ||.+|+... . ...-.|.+|+..
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~-Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCE-EEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchh-hhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 4556679999976442222246555 999999853 1 123579999764
No 86
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.08 E-value=2.6 Score=33.49 Aligned_cols=46 Identities=20% Similarity=0.554 Sum_probs=29.3
Q ss_pred CCCccccccccCCC-----ccEEecCCCcccCHHHHHHHHhc----CCCCcccccc
Q 023674 218 DSGKECVICLSEPR-----DTTVLPCRHMCMCSECAKVLQFQ----TNRCPICRQP 264 (279)
Q Consensus 218 ~~~~~C~IC~~~~~-----~~~~lPCgH~~~C~~C~~~l~~~----~~~CPiCR~~ 264 (279)
.+...|.+|...+. ..+-.-|.|. +|..|....... .-.|-+|+..
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~-VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKN-VCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCE-EETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcc-cccccCCccCCCCCccceechhhHHH
Confidence 45678999998773 1234468888 888886643211 1247777653
No 87
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=41.13 E-value=13 Score=34.36 Aligned_cols=46 Identities=22% Similarity=0.584 Sum_probs=31.0
Q ss_pred CCccccccccCCCcc-EEecCCCcccCHHHHHHHHh----cCCCCccccccc
Q 023674 219 SGKECVICLSEPRDT-TVLPCRHMCMCSECAKVLQF----QTNRCPICRQPV 265 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~-~~lPCgH~~~C~~C~~~l~~----~~~~CPiCR~~i 265 (279)
-...|.+-+...... .-.-|.|+ -|.+-..-+.+ ....||+|...+
T Consensus 248 vSL~CPlS~~ri~~PvRg~~C~Hl-QCFDl~sfL~~~~~~~~W~CPIC~k~~ 298 (371)
T 3i2d_A 248 MSLQCPISYTRMKYPSKSINCKHL-QCFDALWFLHSQLQIPTWQCPVCQIDI 298 (371)
T ss_dssp EESBCTTTSSBCSSEEEETTCCSS-CCEEHHHHHHHHHHSCCCBCTTTCCBC
T ss_pred EeecCCCccccccccCcCCcCCCc-ceECHHHHHHHhhcCCceeCCCCCccc
Confidence 346788877777764 44579998 56666443322 246799998876
No 88
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=39.06 E-value=5.1 Score=36.25 Aligned_cols=46 Identities=24% Similarity=0.499 Sum_probs=36.9
Q ss_pred CCCccccccccCCCccEEec----CC--CcccCHHHHHHHHhcCCCCcccccc
Q 023674 218 DSGKECVICLSEPRDTTVLP----CR--HMCMCSECAKVLQFQTNRCPICRQP 264 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lP----Cg--H~~~C~~C~~~l~~~~~~CPiCR~~ 264 (279)
.....|.||-+...-.++.. =| ++ .|.-|...|.....+|+.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l-~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYL-SCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEE-EETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEE-EeCCCCCEEeecCcCCcCCCCC
Confidence 45678999999987766542 23 45 8999999999888899999886
No 89
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=36.04 E-value=28 Score=27.72 Aligned_cols=47 Identities=17% Similarity=0.355 Sum_probs=32.0
Q ss_pred CCCCccccccccCCCccEEecCCCcccCHHHHHHHH-----------hcCCCCcccccc
Q 023674 217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQ-----------FQTNRCPICRQP 264 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~-----------~~~~~CPiCR~~ 264 (279)
+..+..|.||.+.-.-+.---|--. ||..|+.... ...-.|++|+..
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~-Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNA-FCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCE-EEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCe-eeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4566789999987753333356666 9999998532 123569999853
No 90
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=34.68 E-value=8.2 Score=35.59 Aligned_cols=33 Identities=27% Similarity=0.503 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCCCCCC
Q 023674 15 PPPTPPPTTRQTQSQYVFAAATPYPSQYPNQYYPLYPGYYP 55 (279)
Q Consensus 15 ~pppppp~p~~~~~~~~~~~~~p~p~p~p~~~~~~~~~~~p 55 (279)
++|++||+|++++ .++|+|+++|+.++....+.
T Consensus 404 ~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 436 (449)
T 3iot_A 404 QPPPPPPPPPPPQ--------LPQPPPQAQPLLPQQSYQIT 436 (449)
T ss_dssp -----------------------------------------
T ss_pred CCCCCCCCCCcCC--------CCCCCCCCCCCCCCCCcccC
No 91
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=33.29 E-value=20 Score=32.98 Aligned_cols=46 Identities=24% Similarity=0.497 Sum_probs=31.6
Q ss_pred CccccccccCCCcc-EEecCCCcccCHHHHHHHHh----cCCCCcccccccc
Q 023674 220 GKECVICLSEPRDT-TVLPCRHMCMCSECAKVLQF----QTNRCPICRQPVE 266 (279)
Q Consensus 220 ~~~C~IC~~~~~~~-~~lPCgH~~~C~~C~~~l~~----~~~~CPiCR~~i~ 266 (279)
...|.|-+...... .-.-|.|+ -|.+-..-+.+ ....||+|.+.+.
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~Hl-qCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHL-QCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCC-CCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeeCCCccceeccCCcCCCCCCC-ccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 45688877777764 44679998 67766554332 2467999998764
No 92
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=32.12 E-value=37 Score=31.58 Aligned_cols=53 Identities=25% Similarity=0.410 Sum_probs=34.3
Q ss_pred CCCCCccccccccCCCccEEe--cCCCcccCHHHHHHHHh----------cCCCCccccccc-cceE
Q 023674 216 ETDSGKECVICLSEPRDTTVL--PCRHMCMCSECAKVLQF----------QTNRCPICRQPV-ERLL 269 (279)
Q Consensus 216 ~~~~~~~C~IC~~~~~~~~~l--PCgH~~~C~~C~~~l~~----------~~~~CPiCR~~i-~~~~ 269 (279)
+|..+..|.+|-+...-+.-- .|... ||..|++.+.- ..-.|=+|...- ..++
T Consensus 89 ~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~-FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p~~~ll 154 (386)
T 2pv0_B 89 DDGYQSYCSICCSGETLLICGNPDCTRC-YCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSSRSGLL 154 (386)
T ss_dssp SSSSBCSCTTTCCCSSCEECCSTTCCCE-ECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCCEETTE
T ss_pred CCCCcccceEcCCCCeEEEeCCCCCCcc-hHHHHHHHhcChhHHHHhhccCCceEEEcCCcchHhhh
Confidence 345567899999876433222 45555 99999988642 235799998654 3444
No 93
>1gu3_A Endoglucanase C; carbohydrate-binding module, carbohydrate binding module, CBM, cellulose; HET: BGC; 2.3A {Cellulomonas fimi} SCOP: b.18.1.14 PDB: 1ulo_A 1ulp_A
Probab=29.57 E-value=27 Score=27.77 Aligned_cols=36 Identities=14% Similarity=0.171 Sum_probs=26.9
Q ss_pred ceeecCCceeEEeCCCCCCeeEEEEEecCCCCccEEEEEe
Q 023674 99 DVNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFF 138 (279)
Q Consensus 99 ~VNi~K~Slrl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~ 138 (279)
+|.|..+-|.|++. ..|.|+|...|+.+..|.+...
T Consensus 44 ~vql~q~gi~L~~G----~tY~lsF~A~as~~r~i~v~i~ 79 (149)
T 1gu3_A 44 GVGVVLNGVAIEEG----TTYTLRYTATASTDVTVRALVG 79 (149)
T ss_dssp SSEEEEEEECBCTT----CEEEEEEEEEESSCEECEEEEE
T ss_pred EEEEEeCCEEEcCC----CEEEEEEEEEeCCCcEEEEEEe
Confidence 45566666666543 4899999999999998888643
No 94
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=27.34 E-value=42 Score=25.26 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=32.7
Q ss_pred ccccccccCCCc---cEEecCCCcccCHHHHHHHHhcCCCCccccccccce
Q 023674 221 KECVICLSEPRD---TTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVERL 268 (279)
Q Consensus 221 ~~C~IC~~~~~~---~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~~ 268 (279)
..|..|.....+ ..+.-=|.. +|..|...+.....+|-.|...|...
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~-yC~~cy~~~f~~~~~C~~C~~~I~~~ 82 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMI-LCRNDYIRLFGNSGAGGSGGHMGSGG 82 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEE-ECHHHHHHHHCCCCSSSCSSCCSCCE
T ss_pred CCcCCCCCcccccCCeEEEECCee-ecHHHHHHHcCCCCccccCCCCcCch
Confidence 567777776642 233344555 89999988764444899999999863
No 95
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.15 E-value=31 Score=28.11 Aligned_cols=52 Identities=29% Similarity=0.592 Sum_probs=33.5
Q ss_pred CCCCCccccccccCCCccEEecCC----CcccCHHHHHHHHhc----------CCCCccccccc-cceEE
Q 023674 216 ETDSGKECVICLSEPRDTTVLPCR----HMCMCSECAKVLQFQ----------TNRCPICRQPV-ERLLE 270 (279)
Q Consensus 216 ~~~~~~~C~IC~~~~~~~~~lPCg----H~~~C~~C~~~l~~~----------~~~CPiCR~~i-~~~~~ 270 (279)
+|..+..|.||-+.. .++-|+ ..+||.+|+..+.-. .-.|=+|.-.- .++|+
T Consensus 75 eDG~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~l~~ll~ 141 (159)
T 3a1b_A 75 DDGYQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKGTYGLLR 141 (159)
T ss_dssp TTSSBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSCEETTEE
T ss_pred CCCCcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCccHHHHhh
Confidence 345567899999764 344455 344999999886432 24599997644 34444
No 96
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=25.85 E-value=85 Score=22.86 Aligned_cols=33 Identities=18% Similarity=0.561 Sum_probs=23.5
Q ss_pred CCCccccccccCCCccEEecCC--CcccCHHHHHHH
Q 023674 218 DSGKECVICLSEPRDTTVLPCR--HMCMCSECAKVL 251 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~~lPCg--H~~~C~~C~~~l 251 (279)
..+..|.||-.-..+. ++||+ -.+|+..|++.+
T Consensus 13 ~~D~~C~VC~~~t~~~-l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAES-LFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSSC-CSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCccccccccc-eeccccccccccHhhcccc
Confidence 4567899998555444 55765 334999999997
No 97
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=24.86 E-value=67 Score=25.47 Aligned_cols=46 Identities=11% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCccccccccCCCccEEecCCCcccCHHHHHHHHhcCCCCccccccccc
Q 023674 219 SGKECVICLSEPRDTTVLPCRHMCMCSECAKVLQFQTNRCPICRQPVER 267 (279)
Q Consensus 219 ~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~i~~ 267 (279)
+-..|..|.....+..+.-=|.. +|..|...+. ..+|-.|...|..
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~-yC~~~y~~~f--~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESV-YCKDDFFKRF--GTKCAACQLGIPP 77 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCE-ECHHHHHHHH--SCBCTTTCCBCCT
T ss_pred ccCccCCCCCcCCCCCcccCCee-eecccccccc--cccccccccccCC
Confidence 34677788776665545444555 8999987765 4578889888864
No 98
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.15 E-value=3.4 Score=29.65 Aligned_cols=46 Identities=28% Similarity=0.649 Sum_probs=29.6
Q ss_pred CCCccccccccCCCc-----cEEecCCCcccCHHHHHHHHhcCCCCcccccc
Q 023674 218 DSGKECVICLSEPRD-----TTVLPCRHMCMCSECAKVLQFQTNRCPICRQP 264 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~-----~~~lPCgH~~~C~~C~~~l~~~~~~CPiCR~~ 264 (279)
.....|..|.+..-- .+---|.|. +|.+|-.......-.|-||-..
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~r-VC~~Crv~~~~~~W~C~VC~k~ 73 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHL-VCRDCRIQESNGTWRCKVCSGP 73 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEE-CCTTSEEECSTTCEEEHHHHSS
T ss_pred CCccchhhhCccccccccCCCcCcccChh-hcccccccCCCCCEEEeeCchh
Confidence 456789999987642 344568899 8888854432223357777543
No 99
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=23.93 E-value=13 Score=24.94 Aligned_cols=47 Identities=19% Similarity=0.336 Sum_probs=25.2
Q ss_pred CCCCccccccccCCCccEEecCCCcccCHHHHHH-HH---hcCCCCcccccc
Q 023674 217 TDSGKECVICLSEPRDTTVLPCRHMCMCSECAKV-LQ---FQTNRCPICRQP 264 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~~~~lPCgH~~~C~~C~~~-l~---~~~~~CPiCR~~ 264 (279)
+.++..|.||.+...-+.---|... |+..|+.. +. ...-.|+.|+..
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~-fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSS-YHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCC-BCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHH-HcccccCCCcCcCCCCccCChhhcCc
Confidence 3456789999864321111234444 66666552 11 112359999764
No 100
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=22.95 E-value=21 Score=25.38 Aligned_cols=32 Identities=25% Similarity=0.622 Sum_probs=22.8
Q ss_pred CCCccccccccCCCccE----EecCCCcccCHHHHHH
Q 023674 218 DSGKECVICLSEPRDTT----VLPCRHMCMCSECAKV 250 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~----~lPCgH~~~C~~C~~~ 250 (279)
++...|.+|...+.-.. ---||.. ||..|...
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v-~C~~Cs~~ 52 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHI-FCNTCSSN 52 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCE-ECSGGGCE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCE-EChHHhCC
Confidence 34568999998876431 1358888 99999764
No 101
>2ptt_B Natural killer cell receptor 2B4; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptu_A 1z2k_A
Probab=21.19 E-value=1.3e+02 Score=22.83 Aligned_cols=44 Identities=9% Similarity=0.161 Sum_probs=28.9
Q ss_pred cccccceeecCCceeEEeC---CCCCCeeEEEEEecCCCCccEEEEE
Q 023674 94 VTIRNDVNVKKETLRVEPD---EENPGQFLVAFTFDAAAPGSITVAF 137 (279)
Q Consensus 94 ~~irn~VNi~K~Slrl~~~---~~~~~~y~l~F~fDa~~~~~ItI~f 137 (279)
.+.++.|++..++..|--. .++.|.|+|+.+-+....+.+.|-.
T Consensus 62 ~~fk~r~~fd~~n~AL~I~~vQ~eDSg~Y~LeVt~~tG~v~~~~fql 108 (112)
T 2ptt_B 62 VSFSDIYGFDYGDFALSIKSAKLQDSGHYLLEITNTGGKVCNKNFQL 108 (112)
T ss_dssp GGGGGTEEECTTTCCEEESSCCGGGCEEEEEEEECTTCBEEEEEEEE
T ss_pred eeeCCEEEEecCCcEEEEEecCcccCceEEEEEecCCCcEEEEEEEE
Confidence 4556666666655555442 2567889999988877777766653
No 102
>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate binding, sugar binding protein; 2.00A {Clostridium thermocellum}
Probab=21.12 E-value=77 Score=26.47 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=24.4
Q ss_pred eeecCCceeEEeCCCCCCeeEEEEEecCCCCccEEEEEee
Q 023674 100 VNVKKETLRVEPDEENPGQFLVAFTFDAAAPGSITVAFFG 139 (279)
Q Consensus 100 VNi~K~Slrl~~~~~~~~~y~l~F~fDa~~~~~ItI~f~a 139 (279)
|-|..+-|.|++ ...|.|+|...|+.++.|.+....
T Consensus 91 vQl~q~gi~L~~----G~tY~lSFdAkA~~~r~i~v~i~~ 126 (205)
T 3p6b_A 91 VQMRHRGITLEQ----GHTYTVRFTIWSDKSCRVYAKIGQ 126 (205)
T ss_dssp EEEEEEEEEECT----TCEEEEEEEEEESSCEEEEEEEEE
T ss_pred EEEEECCEEecC----CCEEEEEEEEEeCCCceEEEEEec
Confidence 334444555544 348999999999999888766433
No 103
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=20.65 E-value=14 Score=30.92 Aligned_cols=47 Identities=15% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCCCccccccccCCCccEE-ecCCCcccCHHHHHHHH----hcCCCCccccccc
Q 023674 217 TDSGKECVICLSEPRDTTV-LPCRHMCMCSECAKVLQ----FQTNRCPICRQPV 265 (279)
Q Consensus 217 ~~~~~~C~IC~~~~~~~~~-lPCgH~~~C~~C~~~l~----~~~~~CPiCR~~i 265 (279)
+.++..|.||..... .++ --|... |+..|+..-. ...-.|+.|+..-
T Consensus 4 d~~~~~C~~C~~~g~-ll~Cd~C~~~-~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGGD-LLCCEKCPKV-FHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCEE-EEECSSSSCE-ECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCc-eEEcCCCCCc-cCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 345668999986542 221 135544 7777764211 1124799998754
No 104
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=20.62 E-value=27 Score=25.27 Aligned_cols=32 Identities=16% Similarity=0.374 Sum_probs=22.0
Q ss_pred CCCccccccccCCCccE----EecCCCcccCHHHHHH
Q 023674 218 DSGKECVICLSEPRDTT----VLPCRHMCMCSECAKV 250 (279)
Q Consensus 218 ~~~~~C~IC~~~~~~~~----~lPCgH~~~C~~C~~~ 250 (279)
.+...|.+|...+.-.. ---||.+ ||..|...
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~v-fC~~Cs~~ 42 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRA-FCNGCLSF 42 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCE-EETTTSCE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCE-EChhHcCC
Confidence 44568999998776431 1358888 88888654
Done!