Query 023675
Match_columns 279
No_of_seqs 348 out of 3419
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 05:48:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0529 CysC Adenylylsulfate k 100.0 1.8E-38 3.8E-43 257.4 15.8 195 81-278 2-196 (197)
2 KOG0635 Adenosine 5'-phosphosu 100.0 2.2E-36 4.8E-41 238.6 14.8 198 79-278 8-205 (207)
3 PF01583 APS_kinase: Adenylyls 100.0 2.7E-29 5.9E-34 203.9 11.0 152 101-252 1-152 (156)
4 PRK05506 bifunctional sulfate 99.9 4.6E-26 1E-30 224.4 16.5 248 15-277 383-632 (632)
5 PRK03846 adenylylsulfate kinas 99.9 7.6E-25 1.6E-29 186.3 16.6 194 82-278 4-197 (198)
6 KOG4238 Bifunctional ATP sulfu 99.9 2.9E-25 6.4E-30 197.4 11.7 178 98-278 46-225 (627)
7 TIGR00455 apsK adenylylsulfate 99.9 2.3E-23 5E-28 175.0 14.1 180 89-271 5-184 (184)
8 PRK00889 adenylylsulfate kinas 99.9 6.7E-22 1.5E-26 164.8 17.0 173 100-277 2-174 (175)
9 KOG0058 Peptide exporter, ABC 99.9 3E-22 6.6E-27 192.5 7.9 163 39-218 437-640 (716)
10 PRK05537 bifunctional sulfate 99.9 9.7E-21 2.1E-25 183.5 15.0 178 98-278 388-567 (568)
11 COG1126 GlnQ ABC-type polar am 99.8 3.6E-21 7.8E-26 161.7 6.9 139 82-223 3-177 (240)
12 COG1120 FepC ABC-type cobalami 99.8 3.7E-21 8E-26 167.9 6.0 142 81-225 2-181 (258)
13 KOG0055 Multidrug/pheromone ex 99.8 1.9E-20 4.1E-25 189.3 9.5 176 39-229 320-539 (1228)
14 KOG0055 Multidrug/pheromone ex 99.8 3.5E-20 7.5E-25 187.4 10.0 150 77-229 983-1176(1228)
15 COG1125 OpuBA ABC-type proline 99.8 5.4E-20 1.2E-24 157.9 9.5 139 82-223 2-176 (309)
16 COG3839 MalK ABC-type sugar tr 99.8 9.5E-20 2.1E-24 164.8 11.6 139 81-222 3-173 (338)
17 COG1116 TauB ABC-type nitrate/ 99.8 1.9E-19 4E-24 154.9 11.9 130 89-222 16-170 (248)
18 COG3638 ABC-type phosphate/pho 99.8 1.3E-19 2.8E-24 154.1 9.8 142 81-225 3-190 (258)
19 COG2274 SunT ABC-type bacterio 99.8 1.1E-19 2.3E-24 179.5 9.7 146 77-225 467-652 (709)
20 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 2.2E-19 4.8E-24 156.0 10.3 142 81-225 4-182 (254)
21 COG1136 SalX ABC-type antimicr 99.8 3E-19 6.5E-24 153.0 10.0 134 90-226 19-186 (226)
22 cd02027 APSK Adenosine 5'-phos 99.8 1.4E-18 2.9E-23 141.4 12.6 149 104-252 1-149 (149)
23 COG3840 ThiQ ABC-type thiamine 99.8 1E-18 2.2E-23 143.3 11.7 138 83-223 3-170 (231)
24 PRK05541 adenylylsulfate kinas 99.8 5.7E-18 1.2E-22 141.2 16.3 169 99-274 4-173 (176)
25 COG3842 PotA ABC-type spermidi 99.8 6.4E-19 1.4E-23 160.2 10.6 140 81-223 5-177 (352)
26 COG1127 Ttg2A ABC-type transpo 99.8 6.7E-19 1.4E-23 150.1 9.0 139 79-220 6-183 (263)
27 TIGR02868 CydC thiol reductant 99.8 3.2E-19 6.9E-24 172.8 7.9 144 80-226 333-514 (529)
28 KOG0056 Heavy metal exporter H 99.8 3.7E-19 7.9E-24 164.4 6.9 170 77-252 533-745 (790)
29 COG2884 FtsE Predicted ATPase 99.8 3.8E-18 8.2E-23 140.7 12.0 137 82-224 2-179 (223)
30 COG1135 AbcC ABC-type metal io 99.8 2.1E-18 4.6E-23 151.9 9.9 135 89-226 19-185 (339)
31 COG1124 DppF ABC-type dipeptid 99.8 5.5E-18 1.2E-22 144.9 11.9 139 82-223 4-182 (252)
32 COG0410 LivF ABC-type branched 99.8 3.5E-18 7.5E-23 145.1 9.9 141 82-225 4-179 (237)
33 TIGR03796 NHPM_micro_ABC1 NHPM 99.8 1E-18 2.2E-23 174.9 7.4 146 79-227 475-660 (710)
34 cd03214 ABC_Iron-Siderophores_ 99.8 1.3E-17 2.8E-22 139.6 12.8 128 85-225 3-140 (180)
35 KOG0057 Mitochondrial Fe/S clu 99.8 1.5E-18 3.4E-23 162.3 7.8 147 77-227 347-532 (591)
36 COG0411 LivG ABC-type branched 99.7 6E-19 1.3E-23 150.8 4.4 143 80-225 8-192 (250)
37 cd03229 ABC_Class3 This class 99.7 2E-18 4.4E-23 144.3 6.5 129 83-225 2-143 (178)
38 COG4987 CydC ABC-type transpor 99.7 9.8E-18 2.1E-22 156.8 11.6 140 81-224 336-516 (573)
39 COG1132 MdlB ABC-type multidru 99.7 3.9E-18 8.4E-23 166.6 9.2 145 78-225 325-508 (567)
40 TIGR03797 NHPM_micro_ABC2 NHPM 99.7 2.4E-18 5.2E-23 171.6 7.8 146 79-227 449-633 (686)
41 cd03216 ABC_Carb_Monos_I This 99.7 1E-17 2.2E-22 138.1 10.0 119 83-226 2-126 (163)
42 cd03230 ABC_DR_subfamily_A Thi 99.7 2.4E-18 5.1E-23 143.2 5.9 129 83-226 2-139 (173)
43 cd03246 ABCC_Protease_Secretio 99.7 4.3E-18 9.2E-23 141.7 7.3 127 83-226 2-140 (173)
44 TIGR00958 3a01208 Conjugate Tr 99.7 5E-18 1.1E-22 169.8 8.2 142 79-223 476-658 (711)
45 COG4608 AppF ABC-type oligopep 99.7 1.1E-17 2.4E-22 145.7 9.2 117 88-220 25-147 (268)
46 cd03233 ABC_PDR_domain1 The pl 99.7 1.4E-17 3.1E-22 142.0 9.5 143 81-226 3-162 (202)
47 TIGR03375 type_I_sec_LssB type 99.7 9.5E-18 2E-22 167.5 9.2 145 79-226 461-645 (694)
48 cd03228 ABCC_MRP_Like The MRP 99.7 9.9E-18 2.1E-22 139.2 7.6 127 83-226 2-140 (171)
49 cd03247 ABCC_cytochrome_bd The 99.7 4.8E-18 1E-22 142.0 5.6 129 83-226 2-142 (178)
50 COG1118 CysA ABC-type sulfate/ 99.7 2.9E-17 6.2E-22 144.6 10.5 138 83-223 9-178 (345)
51 TIGR01193 bacteriocin_ABC ABC- 99.7 7.4E-18 1.6E-22 168.6 7.8 146 79-227 471-656 (708)
52 PRK11174 cysteine/glutathione 99.7 7.8E-18 1.7E-22 165.1 7.5 143 80-226 348-529 (588)
53 PRK10790 putative multidrug tr 99.7 8.4E-18 1.8E-22 165.0 7.7 144 80-226 339-520 (592)
54 COG1117 PstB ABC-type phosphat 99.7 1.2E-16 2.6E-21 134.2 13.1 136 81-219 7-186 (253)
55 cd03261 ABC_Org_Solvent_Resist 99.7 5.4E-17 1.2E-21 141.4 11.5 140 83-225 2-179 (235)
56 TIGR00960 3a0501s02 Type II (G 99.7 9.5E-17 2.1E-21 138.1 12.8 142 82-226 2-182 (216)
57 COG4988 CydD ABC-type transpor 99.7 2.1E-17 4.6E-22 156.3 9.2 139 82-223 321-497 (559)
58 PTZ00265 multidrug resistance 99.7 1.3E-17 2.9E-22 176.7 8.6 145 79-226 1163-1402(1466)
59 TIGR02857 CydD thiol reductant 99.7 1.5E-17 3.3E-22 161.1 8.2 144 80-226 319-502 (529)
60 cd03259 ABC_Carb_Solutes_like 99.7 9.8E-17 2.1E-21 137.7 12.3 141 83-226 2-174 (213)
61 PRK11176 lipid transporter ATP 99.7 1.8E-17 4E-22 162.2 8.7 145 79-226 339-524 (582)
62 TIGR02314 ABC_MetN D-methionin 99.7 6.5E-17 1.4E-21 148.3 11.6 141 82-225 2-183 (343)
63 cd03224 ABC_TM1139_LivF_branch 99.7 1.1E-16 2.4E-21 138.1 12.0 141 83-226 2-176 (222)
64 cd03269 ABC_putative_ATPase Th 99.7 7.1E-17 1.5E-21 138.2 10.8 141 83-226 2-172 (210)
65 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 8.7E-17 1.9E-21 138.4 11.1 141 83-226 2-184 (218)
66 PRK11432 fbpC ferric transport 99.7 8.3E-17 1.8E-21 148.2 11.7 142 81-225 6-179 (351)
67 TIGR02673 FtsE cell division A 99.7 2E-16 4.4E-21 135.7 13.2 142 82-226 2-181 (214)
68 PRK11650 ugpC glycerol-3-phosp 99.7 1.1E-16 2.5E-21 147.5 12.2 141 82-225 4-177 (356)
69 TIGR03265 PhnT2 putative 2-ami 99.7 9.9E-17 2.1E-21 147.8 11.7 141 82-225 5-177 (353)
70 PRK11160 cysteine/glutathione 99.7 6.7E-17 1.5E-21 158.1 11.2 145 79-226 336-519 (574)
71 cd03293 ABC_NrtD_SsuB_transpor 99.7 1.2E-16 2.7E-21 137.8 11.4 140 83-226 2-175 (220)
72 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 8.6E-17 1.9E-21 130.0 9.8 107 83-226 2-114 (144)
73 cd03263 ABC_subfamily_A The AB 99.7 1.3E-16 2.8E-21 137.6 11.3 141 83-226 2-177 (220)
74 cd03215 ABC_Carb_Monos_II This 99.7 2.2E-17 4.8E-22 138.5 6.4 133 82-226 5-148 (182)
75 TIGR02315 ABC_phnC phosphonate 99.7 2E-16 4.4E-21 138.3 12.4 140 82-224 2-187 (243)
76 cd03266 ABC_NatA_sodium_export 99.7 1.4E-16 3E-21 137.1 11.2 142 82-226 2-180 (218)
77 PRK13637 cbiO cobalt transport 99.7 1.6E-16 3.4E-21 142.7 11.9 141 82-225 3-187 (287)
78 PRK13537 nodulation ABC transp 99.7 1.3E-16 2.8E-21 144.5 11.3 142 81-225 7-181 (306)
79 cd03256 ABC_PhnC_transporter A 99.7 2.7E-16 5.8E-21 137.3 12.9 140 83-225 2-187 (241)
80 COG3845 ABC-type uncharacteriz 99.7 1.4E-16 3.1E-21 147.8 11.7 140 81-226 9-184 (501)
81 COG1131 CcmA ABC-type multidru 99.7 2E-16 4.2E-21 142.4 12.1 140 82-224 5-178 (293)
82 COG4525 TauB ABC-type taurine 99.7 2.3E-16 5E-21 130.8 11.5 126 91-220 20-170 (259)
83 cd03292 ABC_FtsE_transporter F 99.7 1.8E-16 4E-21 135.9 11.4 141 83-226 2-180 (214)
84 COG4619 ABC-type uncharacteriz 99.7 1E-16 2.2E-21 130.0 9.1 118 93-220 20-171 (223)
85 cd03226 ABC_cobalt_CbiO_domain 99.7 1.9E-16 4E-21 135.2 11.3 130 94-226 18-170 (205)
86 COG4175 ProV ABC-type proline/ 99.7 1.7E-16 3.7E-21 140.1 11.2 120 91-222 43-204 (386)
87 cd03295 ABC_OpuCA_Osmoprotecti 99.7 2E-16 4.4E-21 138.4 11.8 140 83-225 2-178 (242)
88 TIGR01194 cyc_pep_trnsptr cycl 99.7 9.2E-17 2E-21 156.5 10.6 141 80-223 336-511 (555)
89 PRK13657 cyclic beta-1,2-gluca 99.7 4E-17 8.6E-22 160.1 8.0 143 80-226 333-515 (588)
90 cd03265 ABC_DrrA DrrA is the A 99.7 1.9E-16 4.1E-21 136.6 11.3 140 83-225 2-174 (220)
91 cd03262 ABC_HisP_GlnQ_permease 99.7 2.2E-16 4.8E-21 135.3 11.6 141 83-226 2-179 (213)
92 cd03217 ABC_FeS_Assembly ABC-t 99.7 6.1E-17 1.3E-21 137.8 8.0 133 83-224 2-146 (200)
93 cd03268 ABC_BcrA_bacitracin_re 99.7 2.6E-16 5.7E-21 134.5 12.0 141 83-226 2-170 (208)
94 TIGR01288 nodI ATP-binding ABC 99.7 1.8E-16 4E-21 143.3 11.6 141 81-224 4-177 (303)
95 PRK10522 multidrug transporter 99.7 2.5E-16 5.3E-21 153.3 13.2 142 80-224 321-491 (547)
96 cd03223 ABCD_peroxisomal_ALDP 99.7 2.9E-16 6.3E-21 129.9 11.7 127 83-226 2-135 (166)
97 PRK11153 metN DL-methionine tr 99.7 1.7E-16 3.7E-21 145.8 11.4 141 82-225 2-183 (343)
98 TIGR02203 MsbA_lipidA lipid A 99.7 6.7E-17 1.5E-21 157.9 9.2 145 79-226 328-513 (571)
99 PRK11248 tauB taurine transpor 99.7 2.5E-16 5.5E-21 139.0 12.0 139 82-224 2-170 (255)
100 PRK09452 potA putrescine/sperm 99.7 3.1E-16 6.8E-21 145.4 13.1 142 81-225 14-187 (375)
101 TIGR03258 PhnT 2-aminoethylpho 99.7 2.2E-16 4.8E-21 145.8 12.1 143 80-225 4-180 (362)
102 cd03301 ABC_MalK_N The N-termi 99.7 2.4E-16 5.2E-21 135.2 11.5 141 83-226 2-174 (213)
103 PRK13536 nodulation factor exp 99.7 2.1E-16 4.6E-21 144.9 11.9 142 81-225 41-215 (340)
104 cd03225 ABC_cobalt_CbiO_domain 99.7 2.5E-16 5.4E-21 134.9 11.5 130 94-226 19-178 (211)
105 PRK13541 cytochrome c biogenes 99.7 3.6E-16 7.8E-21 132.5 12.3 141 82-225 2-166 (195)
106 TIGR01846 type_I_sec_HlyB type 99.7 5.2E-17 1.1E-21 162.1 8.3 145 79-226 453-637 (694)
107 PRK11000 maltose/maltodextrin 99.7 2.1E-16 4.5E-21 146.6 11.7 140 82-224 4-175 (369)
108 PRK09536 btuD corrinoid ABC tr 99.7 2.1E-16 4.5E-21 147.6 11.6 139 82-223 4-180 (402)
109 cd03218 ABC_YhbG The ABC trans 99.7 2.6E-16 5.6E-21 136.7 11.4 139 83-224 2-175 (232)
110 PRK10908 cell division protein 99.7 3E-16 6.6E-21 135.5 11.8 141 82-225 2-180 (222)
111 cd03232 ABC_PDR_domain2 The pl 99.7 1.5E-16 3.2E-21 134.7 9.5 137 82-226 4-152 (192)
112 cd03258 ABC_MetN_methionine_tr 99.7 5.1E-16 1.1E-20 135.0 13.2 141 82-225 2-183 (233)
113 cd03296 ABC_CysA_sulfate_impor 99.7 3.3E-16 7.2E-21 136.8 11.9 141 82-225 3-179 (239)
114 PRK11629 lolD lipoprotein tran 99.7 3.6E-16 7.8E-21 136.1 12.0 142 81-225 5-188 (233)
115 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 3.1E-16 6.7E-21 136.7 11.7 141 82-225 2-175 (236)
116 TIGR02211 LolD_lipo_ex lipopro 99.7 3.4E-16 7.3E-21 135.0 11.7 141 82-225 2-184 (221)
117 cd03219 ABC_Mj1267_LivG_branch 99.7 4.4E-16 9.6E-21 135.6 12.5 140 83-225 2-186 (236)
118 cd03213 ABCG_EPDR ABCG transpo 99.7 1.9E-16 4.1E-21 134.2 9.9 137 82-226 4-155 (194)
119 COG4152 ABC-type uncharacteriz 99.7 3.3E-16 7.1E-21 133.9 11.3 140 82-224 8-172 (300)
120 cd03254 ABCC_Glucan_exporter_l 99.7 2.6E-16 5.7E-21 136.4 11.0 143 81-226 2-183 (229)
121 COG1137 YhbG ABC-type (unclass 99.7 3E-17 6.6E-22 136.4 4.8 127 93-222 21-179 (243)
122 cd03222 ABC_RNaseL_inhibitor T 99.7 1.6E-16 3.4E-21 132.7 9.1 94 96-224 19-113 (177)
123 cd03257 ABC_NikE_OppD_transpor 99.7 4E-16 8.7E-21 135.0 11.9 142 82-226 2-189 (228)
124 PRK10851 sulfate/thiosulfate t 99.7 3.2E-16 7E-21 144.4 11.9 141 82-225 3-179 (353)
125 cd03260 ABC_PstB_phosphate_tra 99.7 4.6E-16 1E-20 134.8 12.2 142 83-226 2-185 (227)
126 PRK11614 livF leucine/isoleuci 99.7 3.3E-16 7.1E-21 136.6 11.3 142 81-225 5-180 (237)
127 PRK13638 cbiO cobalt transport 99.7 2.8E-16 6.1E-21 139.9 11.1 141 82-225 2-179 (271)
128 cd03264 ABC_drug_resistance_li 99.7 4.2E-16 9E-21 133.6 11.7 140 83-226 2-174 (211)
129 PRK11607 potG putrescine trans 99.7 3E-16 6.6E-21 145.7 11.7 140 81-223 19-190 (377)
130 cd03235 ABC_Metallic_Cations A 99.7 1.8E-16 3.8E-21 136.1 9.2 131 93-226 16-176 (213)
131 PRK13540 cytochrome c biogenes 99.7 6.2E-16 1.3E-20 131.6 12.4 142 82-226 2-171 (200)
132 PRK13647 cbiO cobalt transport 99.7 5.7E-16 1.2E-20 138.2 12.7 142 81-225 4-181 (274)
133 TIGR00972 3a0107s01c2 phosphat 99.7 4.2E-16 9.2E-21 136.8 11.8 141 82-225 2-187 (247)
134 COG1122 CbiO ABC-type cobalt t 99.7 1.9E-16 4.1E-21 137.6 9.3 140 81-226 3-182 (235)
135 PRK11247 ssuB aliphatic sulfon 99.7 1.4E-15 3E-20 134.5 14.9 142 80-224 11-175 (257)
136 cd03231 ABC_CcmA_heme_exporter 99.7 6.8E-16 1.5E-20 131.5 12.4 141 83-226 2-169 (201)
137 TIGR03410 urea_trans_UrtE urea 99.7 6E-16 1.3E-20 134.3 12.3 140 83-225 2-174 (230)
138 PRK09493 glnQ glutamine ABC tr 99.7 4.5E-16 9.7E-21 136.0 11.4 141 82-225 2-179 (240)
139 PRK11124 artP arginine transpo 99.7 6.4E-16 1.4E-20 135.2 12.3 141 82-225 3-184 (242)
140 PRK13538 cytochrome c biogenes 99.7 1.6E-15 3.5E-20 129.4 14.4 142 82-226 2-173 (204)
141 PRK13631 cbiO cobalt transport 99.7 5.6E-16 1.2E-20 141.1 12.3 143 80-225 20-219 (320)
142 PRK13646 cbiO cobalt transport 99.7 6.4E-16 1.4E-20 138.7 12.5 141 82-225 3-188 (286)
143 PRK11701 phnK phosphonate C-P 99.7 4.8E-16 1E-20 137.4 11.5 142 81-225 6-194 (258)
144 COG4604 CeuD ABC-type enteroch 99.7 1.8E-16 4E-21 131.6 8.1 140 82-224 2-177 (252)
145 cd03298 ABC_ThiQ_thiamine_tran 99.7 1.4E-15 3E-20 130.3 14.0 141 83-226 2-172 (211)
146 cd03244 ABCC_MRP_domain2 Domai 99.7 5E-16 1.1E-20 134.0 11.1 143 81-226 2-183 (221)
147 PRK14235 phosphate transporter 99.7 7.3E-16 1.6E-20 137.0 12.4 145 79-225 17-206 (267)
148 COG4559 ABC-type hemin transpo 99.7 1.8E-16 3.9E-21 133.0 7.9 129 92-223 17-182 (259)
149 PRK10619 histidine/lysine/argi 99.7 6.8E-16 1.5E-20 136.3 12.0 142 80-224 4-194 (257)
150 TIGR03005 ectoine_ehuA ectoine 99.7 8.5E-16 1.8E-20 135.3 12.6 141 82-225 1-189 (252)
151 PRK13635 cbiO cobalt transport 99.7 7.3E-16 1.6E-20 137.8 12.3 142 81-225 5-183 (279)
152 PRK14242 phosphate transporter 99.7 1.1E-15 2.4E-20 134.6 13.2 145 80-226 5-193 (253)
153 PRK10584 putative ABC transpor 99.7 1.2E-15 2.6E-20 132.3 13.1 142 81-225 6-189 (228)
154 PRK11264 putative amino-acid A 99.7 6E-16 1.3E-20 136.0 11.4 140 82-224 4-186 (250)
155 TIGR03522 GldA_ABC_ATP gliding 99.7 5.4E-16 1.2E-20 140.1 11.3 141 82-225 3-176 (301)
156 PRK14250 phosphate ABC transpo 99.7 1.5E-15 3.3E-20 132.9 13.7 141 82-225 4-174 (241)
157 PRK13650 cbiO cobalt transport 99.7 6.5E-16 1.4E-20 138.2 11.5 140 82-224 5-182 (279)
158 PRK13539 cytochrome c biogenes 99.7 2.2E-15 4.7E-20 128.9 14.2 141 82-225 3-170 (207)
159 PRK10789 putative multidrug tr 99.7 1.5E-16 3.2E-21 155.6 7.9 144 80-226 312-495 (569)
160 TIGR01277 thiQ thiamine ABC tr 99.7 1.3E-15 2.8E-20 130.8 12.8 140 83-225 2-171 (213)
161 TIGR03608 L_ocin_972_ABC putat 99.7 1.2E-15 2.7E-20 130.0 12.6 131 93-226 15-178 (206)
162 TIGR03740 galliderm_ABC gallid 99.7 1.3E-15 2.7E-20 131.8 12.8 140 83-225 2-167 (223)
163 PRK11831 putative ABC transpor 99.7 7.4E-16 1.6E-20 137.0 11.6 142 80-224 6-185 (269)
164 COG4618 ArpD ABC-type protease 99.7 1.2E-16 2.6E-21 148.6 6.7 145 78-225 331-515 (580)
165 TIGR01842 type_I_sec_PrtD type 99.7 1.6E-16 3.5E-21 154.5 8.0 144 80-226 315-498 (544)
166 PRK10744 pstB phosphate transp 99.7 2.1E-15 4.5E-20 133.5 14.3 147 78-226 10-200 (260)
167 TIGR01978 sufC FeS assembly AT 99.7 9.5E-16 2.1E-20 134.0 12.0 141 83-225 2-187 (243)
168 COG1129 MglA ABC-type sugar tr 99.7 9.2E-16 2E-20 144.6 12.6 141 80-226 12-189 (500)
169 PRK10247 putative ABC transpor 99.7 2.7E-15 5.9E-20 130.0 14.6 141 81-224 7-179 (225)
170 PRK13648 cbiO cobalt transport 99.7 1.2E-15 2.7E-20 135.6 12.7 142 81-225 7-185 (269)
171 TIGR03411 urea_trans_UrtD urea 99.7 1.5E-15 3.2E-20 132.8 12.9 142 82-226 3-187 (242)
172 PLN03130 ABC transporter C fam 99.7 1.5E-16 3.3E-21 170.2 7.9 145 79-226 1235-1418(1622)
173 PRK13636 cbiO cobalt transport 99.7 7E-16 1.5E-20 138.2 11.0 140 81-223 5-182 (283)
174 PRK13649 cbiO cobalt transport 99.7 8E-16 1.7E-20 137.6 11.3 141 82-225 3-188 (280)
175 PRK14247 phosphate ABC transpo 99.7 1.1E-15 2.4E-20 134.3 12.0 143 82-226 4-190 (250)
176 PRK13634 cbiO cobalt transport 99.7 8.1E-16 1.8E-20 138.3 11.4 140 82-224 3-187 (290)
177 PLN03232 ABC transporter C fam 99.7 1.4E-16 3E-21 170.0 7.4 145 79-226 1232-1415(1495)
178 PRK14248 phosphate ABC transpo 99.7 1.5E-15 3.2E-20 135.0 12.9 146 78-225 18-207 (268)
179 PRK15056 manganese/iron transp 99.6 9E-16 1.9E-20 136.7 11.5 142 81-225 6-185 (272)
180 TIGR01192 chvA glucan exporter 99.6 1.7E-16 3.7E-21 155.6 7.4 144 80-226 333-515 (585)
181 PRK13644 cbiO cobalt transport 99.6 1.1E-15 2.4E-20 136.3 12.0 141 82-225 2-179 (274)
182 PRK15112 antimicrobial peptide 99.6 1.1E-15 2.3E-20 135.9 11.7 142 81-225 4-192 (267)
183 PRK13632 cbiO cobalt transport 99.6 1.2E-15 2.7E-20 135.8 12.1 142 81-225 7-185 (271)
184 PRK13643 cbiO cobalt transport 99.6 1.2E-15 2.5E-20 137.1 12.0 140 82-224 2-186 (288)
185 PRK14254 phosphate ABC transpo 99.6 3.9E-15 8.5E-20 133.5 15.4 147 78-226 36-224 (285)
186 PRK11300 livG leucine/isoleuci 99.6 2.2E-15 4.8E-20 132.7 13.5 142 81-225 5-196 (255)
187 PRK10895 lipopolysaccharide AB 99.6 1.4E-15 2.9E-20 133.1 12.0 139 82-223 4-178 (241)
188 PRK11231 fecE iron-dicitrate t 99.6 1.3E-15 2.8E-20 134.4 11.9 141 82-225 3-181 (255)
189 PRK13641 cbiO cobalt transport 99.6 1E-15 2.2E-20 137.5 11.3 141 82-225 3-188 (287)
190 TIGR02769 nickel_nikE nickel i 99.6 1.6E-15 3.4E-20 134.6 12.5 129 94-225 29-193 (265)
191 PRK11308 dppF dipeptide transp 99.6 1.1E-15 2.5E-20 139.5 11.7 128 94-224 33-196 (327)
192 PRK14259 phosphate ABC transpo 99.6 1.4E-15 3E-20 135.3 12.0 144 80-225 12-197 (269)
193 TIGR00957 MRP_assoc_pro multi 99.6 2.3E-16 4.9E-21 168.6 8.2 146 78-226 1281-1465(1522)
194 PRK13543 cytochrome c biogenes 99.6 4.7E-15 1E-19 127.5 14.9 143 80-225 10-180 (214)
195 TIGR02204 MsbA_rel ABC transpo 99.6 2.9E-16 6.4E-21 153.6 8.4 144 80-226 336-520 (576)
196 PRK13645 cbiO cobalt transport 99.6 1.1E-15 2.3E-20 137.4 11.3 142 80-224 5-192 (289)
197 PRK13652 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 136.1 11.8 140 82-224 4-179 (277)
198 COG4181 Predicted ABC-type tra 99.6 3.3E-16 7.2E-21 127.4 7.1 129 89-220 23-184 (228)
199 PRK14269 phosphate ABC transpo 99.6 2E-15 4.4E-20 132.5 12.5 143 82-226 3-186 (246)
200 TIGR01189 ccmA heme ABC export 99.6 4.3E-15 9.4E-20 126.1 14.2 140 83-225 2-170 (198)
201 PRK15079 oligopeptide ABC tran 99.6 1.2E-15 2.7E-20 139.4 11.6 128 94-224 39-203 (331)
202 PRK14273 phosphate ABC transpo 99.6 1.6E-15 3.5E-20 133.6 12.0 143 81-226 7-194 (254)
203 PRK13639 cbiO cobalt transport 99.6 1.9E-15 4E-20 134.9 12.3 141 82-225 2-180 (275)
204 PRK13651 cobalt transporter AT 99.6 1.1E-15 2.3E-20 138.4 10.9 140 82-224 3-207 (305)
205 TIGR02323 CP_lyasePhnK phospho 99.6 1.2E-15 2.5E-20 134.4 10.9 141 81-224 3-190 (253)
206 PRK09544 znuC high-affinity zi 99.6 3.2E-15 6.9E-20 131.7 13.6 142 81-225 4-163 (251)
207 cd03245 ABCC_bacteriocin_expor 99.6 2.7E-15 5.8E-20 129.3 12.8 143 81-226 2-184 (220)
208 PRK10771 thiQ thiamine transpo 99.6 4.4E-15 9.5E-20 129.1 14.2 141 82-225 2-172 (232)
209 PRK10575 iron-hydroxamate tran 99.6 3.6E-15 7.8E-20 132.3 13.8 141 81-224 11-189 (265)
210 TIGR01186 proV glycine betaine 99.6 1.2E-15 2.6E-20 140.8 11.1 131 92-225 9-172 (363)
211 TIGR01166 cbiO cobalt transpor 99.6 1.1E-15 2.5E-20 128.8 10.1 130 93-225 9-170 (190)
212 PRK11022 dppD dipeptide transp 99.6 1.8E-15 4E-20 138.1 12.0 141 82-224 4-195 (326)
213 TIGR02982 heterocyst_DevA ABC 99.6 1.6E-15 3.4E-20 130.9 11.0 141 82-225 2-184 (220)
214 cd03369 ABCC_NFT1 Domain 2 of 99.6 4.1E-15 8.8E-20 127.1 13.3 141 80-226 5-169 (207)
215 cd03253 ABCC_ATM1_transporter 99.6 1.2E-15 2.7E-20 132.8 10.3 141 83-226 2-181 (236)
216 PRK14267 phosphate ABC transpo 99.6 2.1E-15 4.5E-20 132.8 11.7 142 81-225 4-192 (253)
217 cd03252 ABCC_Hemolysin The ABC 99.6 4E-15 8.7E-20 129.7 13.4 141 83-226 2-182 (237)
218 PRK14241 phosphate transporter 99.6 1.9E-15 4E-20 133.6 11.3 143 81-225 4-191 (258)
219 PRK10253 iron-enterobactin tra 99.6 2.3E-15 4.9E-20 133.6 11.9 143 80-225 6-186 (265)
220 PRK10418 nikD nickel transport 99.6 2.1E-15 4.5E-20 133.0 11.5 142 81-225 4-183 (254)
221 TIGR00968 3a0106s01 sulfate AB 99.6 2.8E-15 6.1E-20 130.9 12.2 141 83-226 2-174 (237)
222 cd03294 ABC_Pro_Gly_Bertaine T 99.6 2.2E-15 4.8E-20 134.0 11.7 129 93-224 41-202 (269)
223 TIGR03873 F420-0_ABC_ATP propo 99.6 2.7E-15 5.9E-20 132.4 12.2 141 82-225 2-180 (256)
224 PRK14240 phosphate transporter 99.6 4.3E-15 9.3E-20 130.6 13.4 143 81-225 3-189 (250)
225 PRK14251 phosphate ABC transpo 99.6 2.4E-15 5.2E-20 132.3 11.7 144 81-226 4-191 (251)
226 TIGR01188 drrA daunorubicin re 99.6 1.6E-15 3.6E-20 137.0 10.8 129 92-223 9-165 (302)
227 PRK13633 cobalt transporter AT 99.6 2.7E-15 5.9E-20 134.2 12.0 142 81-225 4-187 (280)
228 PTZ00243 ABC transporter; Prov 99.6 4.2E-16 9E-21 166.5 7.9 145 79-226 1306-1490(1560)
229 PRK14268 phosphate ABC transpo 99.6 2.4E-15 5.3E-20 132.9 11.5 143 81-225 12-197 (258)
230 PRK11144 modC molybdate transp 99.6 3E-15 6.4E-20 138.1 12.5 129 94-225 16-171 (352)
231 cd03300 ABC_PotA_N PotA is an 99.6 3.2E-15 7E-20 130.0 11.9 140 83-225 2-173 (232)
232 PRK14274 phosphate ABC transpo 99.6 3E-15 6.5E-20 132.4 11.8 144 80-225 11-198 (259)
233 cd03289 ABCC_CFTR2 The CFTR su 99.6 2.6E-15 5.6E-20 133.9 11.4 142 81-226 2-182 (275)
234 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.6 2.1E-15 4.5E-20 131.6 10.5 141 83-226 2-183 (238)
235 PRK09473 oppD oligopeptide tra 99.6 2.6E-15 5.6E-20 137.3 11.6 141 81-224 12-203 (330)
236 PRK14275 phosphate ABC transpo 99.6 3.6E-15 7.7E-20 133.8 12.2 145 80-226 38-226 (286)
237 PRK14256 phosphate ABC transpo 99.6 3.9E-15 8.5E-20 131.0 12.2 143 81-225 4-191 (252)
238 PRK14237 phosphate transporter 99.6 3.9E-15 8.5E-20 132.3 12.3 144 80-225 19-206 (267)
239 cd03248 ABCC_TAP TAP, the Tran 99.6 3E-15 6.6E-20 129.6 11.3 146 78-226 8-194 (226)
240 PRK14238 phosphate transporter 99.6 3.7E-15 8.1E-20 132.7 12.1 144 80-225 23-210 (271)
241 PRK10419 nikE nickel transport 99.6 4.3E-15 9.4E-20 132.1 12.5 139 82-223 4-192 (268)
242 cd03251 ABCC_MsbA MsbA is an e 99.6 6.3E-16 1.4E-20 134.5 7.0 141 83-226 2-182 (234)
243 PRK15093 antimicrobial peptide 99.6 3.7E-15 8.1E-20 136.3 12.3 141 82-224 4-200 (330)
244 COG4555 NatA ABC-type Na+ tran 99.6 2E-15 4.4E-20 125.8 9.4 130 93-225 19-176 (245)
245 PRK13548 hmuV hemin importer A 99.6 9.8E-15 2.1E-19 129.1 14.5 140 82-224 3-182 (258)
246 PRK14252 phosphate ABC transpo 99.6 6.4E-15 1.4E-19 130.7 13.2 146 78-225 13-204 (265)
247 cd00267 ABC_ATPase ABC (ATP-bi 99.6 1.4E-15 3E-20 124.4 8.2 106 94-225 17-123 (157)
248 PRK13642 cbiO cobalt transport 99.6 3.4E-15 7.3E-20 133.4 11.3 142 81-225 4-183 (277)
249 PRK09580 sufC cysteine desulfu 99.6 2.5E-15 5.4E-20 131.8 10.3 141 82-224 2-187 (248)
250 COG4598 HisP ABC-type histidin 99.6 4.5E-15 9.7E-20 121.8 10.9 138 82-222 7-192 (256)
251 PRK13640 cbiO cobalt transport 99.6 3.7E-15 8.1E-20 133.5 11.6 142 81-225 5-186 (282)
252 PRK10762 D-ribose transporter 99.6 3.5E-15 7.5E-20 143.8 12.1 140 82-224 5-183 (501)
253 COG5265 ATM1 ABC-type transpor 99.6 6.1E-16 1.3E-20 141.1 6.4 145 78-225 259-442 (497)
254 PRK14236 phosphate transporter 99.6 8.8E-15 1.9E-19 130.3 13.8 144 80-225 24-211 (272)
255 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.6 5.6E-15 1.2E-19 128.0 12.2 128 94-225 40-185 (224)
256 PTZ00265 multidrug resistance 99.6 9.7E-16 2.1E-20 162.7 8.8 62 80-142 381-451 (1466)
257 PRK09984 phosphonate/organopho 99.6 5.3E-15 1.1E-19 131.0 12.1 142 81-225 4-195 (262)
258 PRK14257 phosphate ABC transpo 99.6 7.3E-15 1.6E-19 134.2 13.3 145 79-225 78-268 (329)
259 PRK14262 phosphate ABC transpo 99.6 5.4E-15 1.2E-19 129.9 12.0 142 82-225 4-189 (250)
260 PRK15439 autoinducer 2 ABC tra 99.6 3.7E-15 8.1E-20 143.9 11.9 142 81-225 11-183 (510)
261 PRK14271 phosphate ABC transpo 99.6 6.8E-15 1.5E-19 131.4 12.6 146 79-226 19-207 (276)
262 KOG3354 Gluconate kinase [Carb 99.6 5.1E-15 1.1E-19 118.1 10.4 157 103-273 13-188 (191)
263 PRK14270 phosphate ABC transpo 99.6 6.3E-15 1.4E-19 129.7 11.9 143 81-225 4-190 (251)
264 COG3265 GntK Gluconate kinase 99.6 4.1E-15 8.9E-20 118.0 9.5 151 108-273 1-159 (161)
265 PRK14249 phosphate ABC transpo 99.6 7E-15 1.5E-19 129.4 12.1 142 81-225 4-190 (251)
266 cd03234 ABCG_White The White s 99.6 6.4E-15 1.4E-19 127.6 11.6 142 82-226 4-187 (226)
267 PRK14272 phosphate ABC transpo 99.6 7E-15 1.5E-19 129.3 11.9 142 82-226 5-192 (252)
268 TIGR02324 CP_lyasePhnL phospho 99.6 6.7E-15 1.5E-19 127.2 11.5 130 94-226 26-193 (224)
269 PRK09700 D-allose transporter 99.6 5.5E-15 1.2E-19 142.7 12.1 141 81-224 5-187 (510)
270 PRK14260 phosphate ABC transpo 99.6 7.6E-15 1.6E-19 129.8 11.9 144 81-226 7-194 (259)
271 PRK10938 putative molybdenum t 99.6 4.7E-15 1E-19 142.5 11.3 140 82-224 4-177 (490)
272 cd03288 ABCC_SUR2 The SUR doma 99.6 6.1E-15 1.3E-19 130.3 11.0 146 78-226 16-200 (257)
273 TIGR02142 modC_ABC molybdenum 99.6 6.1E-15 1.3E-19 136.1 11.4 129 94-225 15-174 (354)
274 PRK14243 phosphate transporter 99.6 2E-14 4.4E-19 127.5 14.3 143 81-225 10-194 (264)
275 PRK14264 phosphate ABC transpo 99.6 1.2E-14 2.6E-19 131.6 13.0 145 80-226 44-244 (305)
276 CHL00131 ycf16 sulfate ABC tra 99.6 1.2E-14 2.5E-19 127.9 12.5 143 81-225 7-194 (252)
277 cd03299 ABC_ModC_like Archeal 99.6 7.3E-15 1.6E-19 128.1 11.1 140 84-226 3-173 (235)
278 PRK14261 phosphate ABC transpo 99.6 8E-15 1.7E-19 129.2 11.3 143 81-225 6-192 (253)
279 PRK10070 glycine betaine trans 99.6 6.7E-15 1.4E-19 137.5 11.3 132 91-225 43-207 (400)
280 PRK14265 phosphate ABC transpo 99.6 1.5E-14 3.2E-19 129.1 13.0 145 80-226 19-205 (274)
281 cd03250 ABCC_MRP_domain1 Domai 99.6 1.6E-14 3.5E-19 123.1 12.7 137 83-223 2-168 (204)
282 PRK14239 phosphate transporter 99.6 1.1E-14 2.4E-19 128.1 11.9 144 81-226 5-192 (252)
283 PRK14245 phosphate ABC transpo 99.6 1.2E-14 2.6E-19 127.8 12.0 143 82-226 4-190 (250)
284 COG4172 ABC-type uncharacteriz 99.6 1.3E-14 2.8E-19 132.0 12.3 129 90-222 301-466 (534)
285 PRK13549 xylose transporter AT 99.6 8.9E-15 1.9E-19 141.1 12.1 142 81-224 5-185 (506)
286 PRK14253 phosphate ABC transpo 99.6 1.2E-14 2.7E-19 127.6 11.9 141 82-225 4-188 (249)
287 TIGR01184 ntrCD nitrate transp 99.6 2.3E-14 5E-19 124.6 13.2 129 94-225 3-157 (230)
288 PRK14244 phosphate ABC transpo 99.6 2.8E-14 6.1E-19 125.5 13.8 142 83-226 7-193 (251)
289 PRK13547 hmuV hemin importer A 99.6 2.8E-15 6.1E-20 133.6 7.5 141 82-225 2-197 (272)
290 PRK15134 microcin C ABC transp 99.6 1.1E-14 2.4E-19 141.3 12.2 142 81-225 5-199 (529)
291 PRK10261 glutathione transport 99.6 9.8E-15 2.1E-19 144.1 12.0 142 81-225 313-506 (623)
292 PRK11288 araG L-arabinose tran 99.6 1.3E-14 2.7E-19 140.0 12.4 142 81-225 4-183 (501)
293 cd03290 ABCC_SUR1_N The SUR do 99.6 1.1E-14 2.4E-19 125.4 10.7 127 94-223 19-181 (218)
294 PRK14263 phosphate ABC transpo 99.6 2.4E-14 5.3E-19 126.8 13.0 143 82-226 9-193 (261)
295 PRK14266 phosphate ABC transpo 99.6 1.5E-14 3.2E-19 127.1 11.4 143 82-226 4-190 (250)
296 PRK14258 phosphate ABC transpo 99.6 4.5E-14 9.8E-19 125.0 14.5 144 80-226 6-194 (261)
297 PRK14255 phosphate ABC transpo 99.6 4.4E-14 9.6E-19 124.3 14.4 143 81-225 5-191 (252)
298 PRK09700 D-allose transporter 99.6 1.3E-14 2.7E-19 140.2 11.8 142 81-225 265-452 (510)
299 cd03297 ABC_ModC_molybdenum_tr 99.6 1.7E-14 3.6E-19 124.0 11.1 129 94-226 16-175 (214)
300 COG1119 ModF ABC-type molybden 99.6 1.7E-14 3.7E-19 123.7 10.9 139 80-224 30-213 (257)
301 TIGR01271 CFTR_protein cystic 99.6 3.1E-15 6.8E-20 159.6 7.8 144 79-226 1215-1397(1490)
302 PRK10762 D-ribose transporter 99.6 1.7E-14 3.6E-19 139.1 11.9 142 81-225 257-438 (501)
303 PF00005 ABC_tran: ABC transpo 99.6 4.8E-15 1E-19 118.1 6.8 115 94-211 3-137 (137)
304 COG1123 ATPase components of v 99.6 1E-14 2.2E-19 138.5 9.9 125 93-223 308-470 (539)
305 COG0396 sufC Cysteine desulfur 99.6 2.2E-14 4.8E-19 121.8 10.8 136 82-219 4-181 (251)
306 PRK10982 galactose/methyl gala 99.6 1.4E-14 3E-19 139.3 10.7 130 93-225 15-177 (491)
307 TIGR00954 3a01203 Peroxysomal 99.6 3.6E-14 7.9E-19 140.8 14.0 145 80-227 450-627 (659)
308 TIGR03415 ABC_choXWV_ATP choli 99.6 1.2E-14 2.6E-19 134.9 9.6 138 85-225 33-207 (382)
309 PRK14246 phosphate ABC transpo 99.6 2.5E-14 5.5E-19 126.4 11.2 143 80-225 9-196 (257)
310 TIGR02633 xylG D-xylose ABC tr 99.6 2.2E-14 4.7E-19 138.2 11.6 140 82-224 2-183 (500)
311 PRK15064 ABC transporter ATP-b 99.6 5.6E-14 1.2E-18 136.3 14.3 142 82-227 2-200 (530)
312 PRK15439 autoinducer 2 ABC tra 99.6 3E-14 6.4E-19 137.6 12.0 142 81-225 268-446 (510)
313 PRK10982 galactose/methyl gala 99.5 3.8E-14 8.2E-19 136.3 12.3 142 81-225 250-434 (491)
314 TIGR02770 nickel_nikD nickel i 99.5 2.8E-14 6.2E-19 123.9 10.4 130 93-225 3-168 (230)
315 PRK13549 xylose transporter AT 99.5 3.3E-14 7E-19 137.2 11.8 141 81-224 259-447 (506)
316 cd03267 ABC_NatA_like Similar 99.5 3.1E-14 6.7E-19 124.2 10.5 132 92-226 37-197 (236)
317 TIGR03771 anch_rpt_ABC anchore 99.5 3.2E-14 6.9E-19 123.1 10.3 125 97-225 1-156 (223)
318 TIGR02633 xylG D-xylose ABC tr 99.5 3.3E-14 7.2E-19 137.0 11.5 140 81-223 257-444 (500)
319 PRK10261 glutathione transport 99.5 3.8E-14 8.2E-19 139.9 12.0 140 81-223 12-209 (623)
320 cd03237 ABC_RNaseL_inhibitor_d 99.5 7.2E-14 1.6E-18 122.8 12.4 125 96-224 19-157 (246)
321 PRK10636 putative ABC transpor 99.5 8.6E-14 1.9E-18 137.7 14.1 143 82-227 2-194 (638)
322 PRK11819 putative ABC transpor 99.5 9.3E-14 2E-18 135.5 14.0 143 81-227 6-208 (556)
323 COG0703 AroK Shikimate kinase 99.5 2.6E-15 5.6E-20 123.3 2.4 157 103-274 3-169 (172)
324 PRK15064 ABC transporter ATP-b 99.5 1E-13 2.2E-18 134.5 13.8 144 81-227 319-483 (530)
325 cd03291 ABCC_CFTR1 The CFTR su 99.5 1.7E-13 3.7E-18 122.7 14.0 143 78-223 36-200 (282)
326 TIGR03269 met_CoM_red_A2 methy 99.5 4.1E-14 8.9E-19 137.0 10.8 139 83-223 2-209 (520)
327 COG0444 DppD ABC-type dipeptid 99.5 7.1E-14 1.5E-18 124.5 11.4 133 89-223 18-194 (316)
328 COG4107 PhnK ABC-type phosphon 99.5 9.2E-14 2E-18 113.6 10.7 143 81-226 6-195 (258)
329 COG4615 PvdE ABC-type sideroph 99.5 1.1E-13 2.3E-18 125.7 12.3 140 78-222 319-488 (546)
330 COG4167 SapF ABC-type antimicr 99.5 3.6E-14 7.8E-19 116.8 8.4 129 88-220 25-187 (267)
331 PRK13545 tagH teichoic acids e 99.5 1.6E-13 3.6E-18 130.8 14.0 140 81-225 21-186 (549)
332 PRK10938 putative molybdenum t 99.5 8.2E-14 1.8E-18 133.9 12.1 143 80-225 259-444 (490)
333 TIGR03269 met_CoM_red_A2 methy 99.5 1.4E-13 3E-18 133.3 13.5 142 81-225 279-470 (520)
334 COG4136 ABC-type uncharacteriz 99.5 2.9E-14 6.3E-19 113.8 7.0 134 94-232 20-188 (213)
335 PRK03695 vitamin B12-transport 99.5 1.4E-14 3.1E-19 127.3 5.7 130 92-225 12-176 (248)
336 PRK13546 teichoic acids export 99.5 1E-13 2.2E-18 123.1 10.9 127 93-224 41-185 (264)
337 PRK11147 ABC transporter ATPas 99.5 1.6E-13 3.4E-18 135.8 13.3 143 82-227 4-201 (635)
338 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 2E-13 4.4E-18 133.0 13.9 142 82-227 5-206 (552)
339 cd03238 ABC_UvrA The excision 99.5 9.7E-14 2.1E-18 115.8 9.9 118 89-226 8-133 (176)
340 cd00227 CPT Chloramphenicol (C 99.5 1.4E-13 3.1E-18 114.6 10.9 158 101-271 1-174 (175)
341 PRK15134 microcin C ABC transp 99.5 8E-14 1.7E-18 135.2 10.7 142 81-226 275-469 (529)
342 PLN03130 ABC transporter C fam 99.5 6E-14 1.3E-18 150.5 10.6 142 80-224 613-782 (1622)
343 PRK11288 araG L-arabinose tran 99.5 1.4E-13 2.9E-18 132.8 12.2 141 81-224 257-438 (501)
344 PRK11147 ABC transporter ATPas 99.5 2.1E-13 4.6E-18 134.9 13.8 143 81-227 319-485 (635)
345 PRK15177 Vi polysaccharide exp 99.5 2.2E-13 4.9E-18 117.1 12.0 126 93-223 4-145 (213)
346 COG1123 ATPase components of v 99.5 2.2E-13 4.9E-18 129.4 13.0 143 82-226 6-198 (539)
347 cd03236 ABC_RNaseL_inhibitor_d 99.5 1.4E-13 3.1E-18 121.5 11.0 125 95-223 20-180 (255)
348 COG4133 CcmA ABC-type transpor 99.5 2.8E-13 6E-18 111.9 11.2 124 94-220 20-168 (209)
349 PLN03211 ABC transporter G-25; 99.5 1.1E-13 2.5E-18 137.0 10.2 129 93-224 85-248 (659)
350 PRK10636 putative ABC transpor 99.5 3.1E-13 6.7E-18 133.7 12.8 143 81-227 312-475 (638)
351 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 4.5E-13 9.8E-18 130.6 13.6 143 81-227 322-488 (552)
352 PLN03232 ABC transporter C fam 99.5 9.5E-14 2.1E-18 148.4 9.7 142 80-224 613-782 (1495)
353 PRK13409 putative ATPase RIL; 99.5 5.3E-13 1.2E-17 130.7 13.8 140 81-225 340-496 (590)
354 PRK11819 putative ABC transpor 99.5 5.7E-13 1.2E-17 130.0 13.8 143 81-227 324-490 (556)
355 COG1101 PhnK ABC-type uncharac 99.5 3.2E-13 6.9E-18 113.8 10.2 126 93-223 23-189 (263)
356 PRK10535 macrolide transporter 99.5 3.7E-13 7.9E-18 133.5 12.0 141 81-224 4-186 (648)
357 COG0488 Uup ATPase components 99.5 4.6E-13 1E-17 128.7 12.3 134 81-218 3-189 (530)
358 COG4586 ABC-type uncharacteriz 99.5 1.6E-13 3.6E-18 119.2 8.2 127 90-219 38-193 (325)
359 TIGR00956 3a01205 Pleiotropic 99.5 3.2E-13 7E-18 143.4 12.0 140 82-223 760-943 (1394)
360 PLN03073 ABC transporter F fam 99.5 9.3E-13 2E-17 131.5 14.5 143 80-226 507-671 (718)
361 COG4148 ModC ABC-type molybdat 99.4 8.7E-14 1.9E-18 121.3 5.4 122 95-222 17-168 (352)
362 TIGR01257 rim_protein retinal- 99.4 4.6E-13 1E-17 144.3 11.6 142 80-224 927-1103(2272)
363 PRK11545 gntK gluconate kinase 99.4 9E-13 1.9E-17 108.7 10.6 148 108-273 1-160 (163)
364 COG1134 TagH ABC-type polysacc 99.4 1.1E-12 2.3E-17 112.7 11.1 130 86-220 37-185 (249)
365 TIGR01257 rim_protein retinal- 99.4 5.1E-13 1.1E-17 144.0 11.1 142 80-224 1936-2112(2272)
366 PRK09825 idnK D-gluconate kina 99.4 1.7E-12 3.7E-17 108.4 11.6 153 101-273 2-168 (176)
367 TIGR00957 MRP_assoc_pro multi 99.4 6.9E-13 1.5E-17 142.1 11.3 142 81-225 636-803 (1522)
368 PRK13409 putative ATPase RIL; 99.4 1E-12 2.2E-17 128.8 11.2 130 93-226 91-256 (590)
369 KOG0054 Multidrug resistance-a 99.4 3.8E-13 8.2E-18 139.5 8.5 147 77-226 1134-1319(1381)
370 PRK13948 shikimate kinase; Pro 99.4 1E-13 2.2E-18 116.2 3.2 159 100-273 8-175 (182)
371 TIGR01313 therm_gnt_kin carboh 99.4 2.9E-12 6.3E-17 105.3 11.4 150 105-271 1-161 (163)
372 COG4778 PhnL ABC-type phosphon 99.4 1.1E-12 2.4E-17 106.9 8.5 134 91-227 26-197 (235)
373 PLN03073 ABC transporter F fam 99.4 3.2E-12 6.9E-17 127.7 13.7 147 79-227 175-389 (718)
374 PRK06762 hypothetical protein; 99.4 4.5E-13 9.7E-18 110.4 6.2 159 102-272 2-163 (166)
375 COG4161 ArtP ABC-type arginine 99.4 3.6E-12 7.7E-17 103.1 11.0 142 82-226 3-185 (242)
376 TIGR00955 3a01204 The Eye Pigm 99.4 1.6E-12 3.4E-17 128.4 10.2 130 93-225 42-209 (617)
377 COG4674 Uncharacterized ABC-ty 99.4 3.4E-13 7.4E-18 112.0 3.4 146 80-228 9-196 (249)
378 TIGR01271 CFTR_protein cystic 99.4 1.8E-12 3.9E-17 138.6 9.7 129 93-224 443-590 (1490)
379 PRK05057 aroK shikimate kinase 99.3 4E-13 8.8E-18 111.8 2.7 158 102-273 4-171 (172)
380 PLN03140 ABC transporter G fam 99.3 4.3E-12 9.3E-17 134.9 11.0 141 81-224 867-1061(1470)
381 COG0488 Uup ATPase components 99.3 6.4E-12 1.4E-16 120.9 10.3 143 79-225 319-482 (530)
382 TIGR01187 potA spermidine/putr 99.3 4.4E-12 9.4E-17 115.9 8.4 116 107-225 1-143 (325)
383 COG4172 ABC-type uncharacteriz 99.3 6.6E-12 1.4E-16 114.5 8.9 140 82-223 7-198 (534)
384 KOG0061 Transporter, ABC super 99.3 1.4E-11 3E-16 121.2 11.2 136 80-220 24-208 (613)
385 COG4178 ABC-type uncharacteriz 99.3 3.4E-11 7.4E-16 116.1 12.5 144 79-227 390-560 (604)
386 PF07931 CPT: Chloramphenicol 99.3 1.4E-11 3.1E-16 102.3 8.4 159 102-272 1-174 (174)
387 PRK14021 bifunctional shikimat 99.3 2.3E-12 4.9E-17 125.1 3.1 163 102-274 6-177 (542)
388 PRK13949 shikimate kinase; Pro 99.2 2.3E-12 5E-17 106.9 2.4 153 104-271 3-169 (169)
389 PLN02199 shikimate kinase 99.2 3.6E-12 7.8E-17 113.3 2.8 157 101-273 101-288 (303)
390 KOG0054 Multidrug resistance-a 99.2 3.7E-11 8.1E-16 124.9 10.6 150 79-231 516-692 (1381)
391 PRK00131 aroK shikimate kinase 99.2 6.8E-12 1.5E-16 103.6 3.6 157 100-273 2-171 (175)
392 TIGR00956 3a01205 Pleiotropic 99.2 4.4E-11 9.6E-16 127.2 10.3 132 91-224 76-251 (1394)
393 cd03270 ABC_UvrA_I The excisio 99.2 1.2E-10 2.6E-15 101.1 11.0 45 179-225 135-182 (226)
394 PTZ00243 ABC transporter; Prov 99.2 3E-11 6.6E-16 129.6 8.6 128 93-223 677-823 (1560)
395 cd03278 ABC_SMC_barmotin Barmo 99.2 2.1E-11 4.6E-16 103.6 5.8 131 90-226 11-161 (197)
396 PLN03140 ABC transporter G fam 99.2 5E-11 1.1E-15 126.9 9.2 130 92-224 181-378 (1470)
397 cd02021 GntK Gluconate kinase 99.2 1.9E-10 4.1E-15 93.1 9.2 112 104-220 1-118 (150)
398 PRK13947 shikimate kinase; Pro 99.1 2E-11 4.4E-16 100.9 3.1 154 104-275 3-170 (171)
399 PRK10078 ribose 1,5-bisphospho 99.1 5.6E-10 1.2E-14 93.9 11.1 155 102-273 2-176 (186)
400 PRK13946 shikimate kinase; Pro 99.1 3.1E-11 6.8E-16 101.4 3.3 154 102-273 10-176 (184)
401 KOG0065 Pleiotropic drug resis 99.1 1.4E-10 3E-15 118.8 7.2 141 80-222 786-970 (1391)
402 PRK13477 bifunctional pantoate 99.1 2.5E-10 5.5E-15 109.3 8.3 47 89-141 272-318 (512)
403 KOG0060 Long-chain acyl-CoA tr 99.1 1.8E-09 3.9E-14 102.5 13.6 150 78-231 430-619 (659)
404 TIGR03574 selen_PSTK L-seryl-t 99.1 3E-10 6.4E-15 99.9 7.6 157 104-273 1-169 (249)
405 TIGR02322 phosphon_PhnN phosph 99.1 1.6E-09 3.4E-14 90.3 11.0 154 102-273 1-178 (179)
406 KOG0927 Predicted transporter 99.1 7E-10 1.5E-14 104.5 9.3 143 80-225 388-552 (614)
407 KOG0059 Lipid exporter ABCA1 a 99.0 7.2E-10 1.6E-14 113.5 9.8 140 81-223 564-739 (885)
408 PRK08154 anaerobic benzoate ca 99.0 7.3E-11 1.6E-15 107.1 1.7 165 96-278 127-306 (309)
409 PRK00625 shikimate kinase; Pro 99.0 1.1E-10 2.4E-15 97.2 2.6 157 104-271 2-171 (173)
410 PF01202 SKI: Shikimate kinase 99.0 1.1E-11 2.4E-16 101.7 -4.5 148 111-272 1-158 (158)
411 KOG0062 ATPase component of AB 99.0 1.2E-09 2.7E-14 102.3 8.3 137 79-218 78-234 (582)
412 COG0645 Predicted kinase [Gene 99.0 1.4E-09 3E-14 88.8 7.6 112 102-218 1-122 (170)
413 cd03272 ABC_SMC3_euk Eukaryoti 99.0 2E-09 4.4E-14 94.0 8.7 46 179-226 156-206 (243)
414 cd03271 ABC_UvrA_II The excisi 99.0 1.3E-08 2.7E-13 90.2 13.4 139 84-224 3-214 (261)
415 PRK04182 cytidylate kinase; Pr 99.0 2.2E-09 4.7E-14 89.1 7.8 151 104-274 2-174 (180)
416 PRK03731 aroL shikimate kinase 99.0 3.2E-10 6.9E-15 93.8 2.6 153 103-273 3-170 (171)
417 PRK05416 glmZ(sRNA)-inactivati 98.9 3.2E-09 7E-14 95.1 6.9 142 100-273 4-160 (288)
418 cd03279 ABC_sbcCD SbcCD and ot 98.9 4.6E-09 9.9E-14 90.2 7.2 139 81-224 5-175 (213)
419 cd03240 ABC_Rad50 The catalyti 98.9 3.3E-09 7.2E-14 90.6 6.1 134 82-225 4-165 (204)
420 COG4138 BtuD ABC-type cobalami 98.8 6.4E-09 1.4E-13 85.4 6.3 45 96-142 19-63 (248)
421 PF13671 AAA_33: AAA domain; P 98.8 2.3E-09 5E-14 85.6 3.4 112 104-220 1-118 (143)
422 COG1129 MglA ABC-type sugar tr 98.8 3.1E-08 6.6E-13 94.1 10.9 143 81-226 263-445 (500)
423 cd03273 ABC_SMC2_euk Eukaryoti 98.8 8.3E-09 1.8E-13 90.8 6.7 46 179-226 164-214 (251)
424 PRK03839 putative kinase; Prov 98.8 9.4E-09 2E-13 85.8 6.4 148 104-274 2-154 (180)
425 cd00820 PEPCK_HprK Phosphoenol 98.8 6.1E-09 1.3E-13 79.4 4.7 43 93-142 6-48 (107)
426 PHA02530 pseT polynucleotide k 98.8 1.2E-08 2.7E-13 91.9 7.4 115 102-220 2-123 (300)
427 KOG0064 Peroxisomal long-chain 98.8 6.5E-08 1.4E-12 91.3 11.6 147 80-230 480-660 (728)
428 cd00464 SK Shikimate kinase (S 98.8 1.3E-09 2.8E-14 88.3 0.3 140 105-261 2-153 (154)
429 KOG0066 eIF2-interacting prote 98.7 3E-08 6.6E-13 91.7 8.3 137 80-226 585-748 (807)
430 KOG0927 Predicted transporter 98.7 4.8E-08 1E-12 92.3 9.4 52 77-129 71-127 (614)
431 PRK08233 hypothetical protein; 98.7 9.2E-08 2E-12 79.5 10.0 162 101-277 2-181 (182)
432 TIGR03238 dnd_assoc_3 dnd syst 98.7 3.2E-08 6.8E-13 93.3 6.9 48 92-142 22-70 (504)
433 COG0283 Cmk Cytidylate kinase 98.7 6.4E-08 1.4E-12 82.0 7.1 72 197-273 136-219 (222)
434 TIGR00017 cmk cytidylate kinas 98.7 1.7E-07 3.6E-12 80.9 9.9 25 103-127 3-27 (217)
435 COG1245 Predicted ATPase, RNas 98.6 9.2E-08 2E-12 89.0 8.3 121 82-216 343-489 (591)
436 cd03275 ABC_SMC1_euk Eukaryoti 98.6 3.4E-07 7.5E-12 80.4 11.1 50 82-134 4-53 (247)
437 TIGR02173 cyt_kin_arch cytidyl 98.6 1.3E-07 2.9E-12 77.7 7.3 148 104-271 2-170 (171)
438 PRK00300 gmk guanylate kinase; 98.6 3.4E-07 7.4E-12 77.8 10.1 28 100-127 3-30 (205)
439 COG2401 ABC-type ATPase fused 98.6 1.9E-07 4.2E-12 86.0 8.8 128 93-222 400-547 (593)
440 PRK14532 adenylate kinase; Pro 98.6 8.9E-08 1.9E-12 80.4 5.6 33 104-141 2-34 (188)
441 TIGR01360 aden_kin_iso1 adenyl 98.6 2E-07 4.3E-12 77.9 7.6 26 102-127 3-28 (188)
442 COG1102 Cmk Cytidylate kinase 98.6 2E-07 4.4E-12 75.5 7.3 149 104-273 2-172 (179)
443 PRK13951 bifunctional shikimat 98.6 3.1E-08 6.7E-13 95.1 2.6 147 104-271 2-160 (488)
444 PRK09518 bifunctional cytidyla 98.5 1.2E-06 2.6E-11 88.2 13.6 71 197-273 153-231 (712)
445 TIGR01663 PNK-3'Pase polynucle 98.5 9.4E-08 2E-12 92.1 5.2 102 98-220 365-468 (526)
446 PRK14527 adenylate kinase; Pro 98.5 2.8E-07 6.2E-12 77.7 7.4 29 99-127 3-31 (191)
447 cd03280 ABC_MutS2 MutS2 homolo 98.5 1.3E-07 2.8E-12 80.4 5.3 29 95-123 20-49 (200)
448 cd03276 ABC_SMC6_euk Eukaryoti 98.5 1.3E-06 2.8E-11 74.3 11.5 122 95-224 15-155 (198)
449 TIGR01359 UMP_CMP_kin_fam UMP- 98.5 1.6E-07 3.5E-12 78.3 5.5 110 104-220 1-124 (183)
450 PRK13975 thymidylate kinase; P 98.5 5.3E-07 1.2E-11 76.0 8.5 26 102-127 2-27 (196)
451 cd03243 ABC_MutS_homologs The 98.5 1.1E-07 2.5E-12 80.9 4.2 30 96-125 23-52 (202)
452 PRK01184 hypothetical protein; 98.5 1.2E-06 2.7E-11 73.1 10.0 152 104-273 3-178 (184)
453 TIGR02858 spore_III_AA stage I 98.5 5.6E-07 1.2E-11 80.1 8.1 39 103-142 112-150 (270)
454 PLN02200 adenylate kinase fami 98.4 1.5E-06 3.3E-11 75.8 9.5 166 96-276 37-227 (234)
455 cd03283 ABC_MutS-like MutS-lik 98.4 6.2E-07 1.3E-11 76.3 6.7 31 96-126 19-49 (199)
456 PRK00349 uvrA excinuclease ABC 98.4 2.3E-06 4.9E-11 87.9 11.8 42 81-122 614-655 (943)
457 PRK06217 hypothetical protein; 98.4 1.4E-06 3.1E-11 72.9 8.1 34 104-142 3-36 (183)
458 cd01130 VirB11-like_ATPase Typ 98.4 3.6E-07 7.9E-12 76.8 4.4 43 96-139 19-61 (186)
459 TIGR03263 guanyl_kin guanylate 98.4 4.6E-06 9.9E-11 69.3 10.9 25 102-126 1-25 (180)
460 cd03274 ABC_SMC4_euk Eukaryoti 98.4 6.5E-07 1.4E-11 76.9 5.7 45 180-226 126-175 (212)
461 KOG2355 Predicted ABC-type tra 98.4 7.2E-07 1.6E-11 75.3 5.6 62 79-141 11-78 (291)
462 PRK14530 adenylate kinase; Pro 98.3 2.4E-06 5.2E-11 73.4 8.5 35 102-141 3-37 (215)
463 PRK08118 topology modulation p 98.3 1.2E-06 2.5E-11 72.6 6.0 99 104-222 3-101 (167)
464 COG2895 CysN GTPases - Sulfate 98.3 3.3E-07 7.2E-12 82.7 2.8 48 14-72 364-413 (431)
465 PRK14738 gmk guanylate kinase; 98.3 1.1E-05 2.3E-10 69.1 12.0 27 100-126 11-37 (206)
466 PF08433 KTI12: Chromatin asso 98.3 9.4E-07 2E-11 78.6 5.6 111 104-220 3-119 (270)
467 COG4170 SapD ABC-type antimicr 98.3 7.2E-07 1.6E-11 75.5 4.6 43 85-127 16-58 (330)
468 TIGR00630 uvra excinuclease AB 98.3 5.8E-06 1.3E-10 84.8 12.0 41 81-121 612-652 (924)
469 PRK11860 bifunctional 3-phosph 98.3 2.9E-06 6.2E-11 84.7 9.5 37 101-142 441-477 (661)
470 PRK00635 excinuclease ABC subu 98.3 5.3E-06 1.1E-10 89.4 11.6 40 81-120 600-639 (1809)
471 PRK14490 putative bifunctional 98.3 8.3E-07 1.8E-11 82.6 4.9 160 100-273 3-168 (369)
472 KOG0062 ATPase component of AB 98.3 6.1E-06 1.3E-10 78.0 10.4 138 79-226 360-526 (582)
473 PRK00023 cmk cytidylate kinase 98.3 7.2E-06 1.6E-10 71.1 10.2 27 102-128 4-30 (225)
474 cd03227 ABC_Class2 ABC-type Cl 98.3 2E-06 4.4E-11 70.6 6.4 103 96-224 15-123 (162)
475 PRK00698 tmk thymidylate kinas 98.3 2.8E-06 6E-11 72.0 7.2 34 101-134 2-35 (205)
476 PRK07261 topology modulation p 98.2 2.2E-06 4.8E-11 71.1 6.4 98 104-220 2-99 (171)
477 PRK13808 adenylate kinase; Pro 98.2 2.7E-06 5.8E-11 77.6 7.3 32 104-140 2-33 (333)
478 PRK06761 hypothetical protein; 98.2 5.2E-06 1.1E-10 74.1 8.9 118 102-220 3-127 (282)
479 cd01672 TMPK Thymidine monopho 98.2 1.2E-06 2.7E-11 73.4 4.6 24 104-127 2-25 (200)
480 TIGR00235 udk uridine kinase. 98.2 1.1E-06 2.5E-11 75.0 4.2 29 99-127 3-31 (207)
481 cd03277 ABC_SMC5_euk Eukaryoti 98.2 1.2E-05 2.6E-10 69.2 9.9 44 180-225 125-173 (213)
482 COG4639 Predicted kinase [Gene 98.2 1.9E-06 4.1E-11 69.5 4.5 109 103-218 3-115 (168)
483 PRK14531 adenylate kinase; Pro 98.2 3.4E-06 7.4E-11 70.7 6.2 35 103-142 3-38 (183)
484 TIGR03575 selen_PSTK_euk L-ser 98.2 5.1E-06 1.1E-10 76.1 7.3 111 105-219 2-121 (340)
485 PRK14737 gmk guanylate kinase; 98.1 6.7E-05 1.5E-09 63.1 13.3 26 101-126 3-28 (186)
486 cd01428 ADK Adenylate kinase ( 98.1 8E-06 1.7E-10 68.5 7.2 32 105-141 2-33 (194)
487 COG1245 Predicted ATPase, RNas 98.1 7E-06 1.5E-10 76.7 7.0 116 98-218 96-249 (591)
488 PRK10416 signal recognition pa 98.1 1.3E-05 2.9E-10 73.0 8.8 41 100-141 112-152 (318)
489 PF03668 ATP_bind_2: P-loop AT 98.1 6.5E-05 1.4E-09 66.8 12.7 143 103-273 2-156 (284)
490 PF13207 AAA_17: AAA domain; P 98.1 1.9E-06 4.1E-11 66.7 2.4 33 104-141 1-33 (121)
491 PRK02496 adk adenylate kinase; 98.1 9.9E-06 2.1E-10 67.7 6.9 25 104-128 3-27 (184)
492 COG3845 ABC-type uncharacteriz 98.1 2.9E-05 6.2E-10 73.2 10.5 140 80-222 256-443 (501)
493 COG4088 Predicted nucleotide k 98.1 3.2E-05 6.8E-10 65.4 9.6 110 104-218 3-120 (261)
494 PRK06547 hypothetical protein; 98.1 6.9E-06 1.5E-10 68.3 5.5 38 100-142 13-50 (172)
495 PLN02165 adenylate isopentenyl 98.1 3.3E-05 7.2E-10 70.3 10.2 30 98-127 39-68 (334)
496 PLN02924 thymidylate kinase 98.0 1.8E-05 3.8E-10 68.5 8.1 35 98-132 12-46 (220)
497 PRK08533 flagellar accessory p 98.0 2.6E-05 5.6E-10 67.9 9.0 42 98-140 20-62 (230)
498 PRK09270 nucleoside triphospha 98.0 4.3E-06 9.4E-11 72.6 4.0 33 100-133 31-63 (229)
499 PRK08356 hypothetical protein; 98.0 2.5E-05 5.5E-10 66.1 8.6 23 102-124 5-27 (195)
500 TIGR01351 adk adenylate kinase 98.0 9.7E-06 2.1E-10 69.4 6.1 105 105-220 2-124 (210)
No 1
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-38 Score=257.40 Aligned_cols=195 Identities=59% Similarity=0.991 Sum_probs=185.5
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHH
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI 160 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~ 160 (279)
++.|+...++...+..+..++|.++||+|+|||||||++++|...|...+...+++|||++|++++.+++|+.+++.+++
T Consensus 2 ni~w~~~~v~~~~r~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eni 81 (197)
T COG0529 2 NIVWHPHSVTKQEREALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENI 81 (197)
T ss_pred CccccccccCHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHH
Confidence 46677667777788888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcC
Q 023675 161 RRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPY 240 (279)
Q Consensus 161 ~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~ 240 (279)
+++.+++.+|.++|++++.++.||....|+.+|+++.+.+|++||+|+|++.|.+|++++||++++.|++.+|+++..+|
T Consensus 82 RRvaevAkll~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RDpKGLYkKAr~GeI~~fTGid~pY 161 (197)
T COG0529 82 RRVAEVAKLLADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRDPKGLYKKARAGEIKNFTGIDSPY 161 (197)
T ss_pred HHHHHHHHHHHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcCchHHHHHHHcCCCCCCcCCCCCC
Confidence 99999999999999999999999999999999999999899999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675 241 EPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278 (279)
Q Consensus 241 ~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~ 278 (279)
++|..|+++++| +..++++++++|+.+|.+...++
T Consensus 162 E~P~~Pel~l~t---~~~~vee~v~~i~~~l~~~~~~~ 196 (197)
T COG0529 162 EAPENPELHLDT---DRNSVEECVEQILDLLKERKIIK 196 (197)
T ss_pred CCCCCCeeEecc---ccCCHHHHHHHHHHHHHhccccc
Confidence 999999999999 88999999999999999876653
No 2
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-36 Score=238.63 Aligned_cols=198 Identities=82% Similarity=1.342 Sum_probs=188.2
Q ss_pred CCCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHH
Q 023675 79 STNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVE 158 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~ 158 (279)
..+|.|+...+++.+|..|.-|+|.+||++|.|||||||++-+|.+.|...+.-.+.+|||++|.+++.+++|..+++.+
T Consensus 8 atNI~wh~~~v~k~eRq~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~E 87 (207)
T KOG0635|consen 8 ATNITWHESSVTKEERQKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNE 87 (207)
T ss_pred ccceeeecCCccHHHHHHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhh
Confidence 35899999999999999999999999999999999999999999999988888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccC
Q 023675 159 NIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDD 238 (279)
Q Consensus 159 ~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~ 238 (279)
.++++.+++.+|.+.+++.+....+|++.+|+.+|+++.+.+|++||+|.|++.+.+|++++||+..+.|++..|+++.+
T Consensus 88 NIRRigeVaKLFADag~iciaSlISPYR~dRdacRel~~~~~FiEvfmdvpl~vcE~RDPKGLYK~ARaGkIKgFTGIdd 167 (207)
T KOG0635|consen 88 NIRRIGEVAKLFADAGVICIASLISPYRKDRDACRELLPEGDFIEVFMDVPLEVCEARDPKGLYKLARAGKIKGFTGIDD 167 (207)
T ss_pred hHHHHHHHHHHHhccceeeeehhcCchhccHHHHHHhccCCCeEEEEecCcHHHhhccCchhHHHHHhcccccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675 239 PYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278 (279)
Q Consensus 239 ~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~ 278 (279)
||+.|..+++++... ...+|+++++.|+.||.++|+++
T Consensus 168 PYEaP~~cEi~l~~~--~~~sp~~mae~iv~YL~~kg~l~ 205 (207)
T KOG0635|consen 168 PYEAPLNCEIVLKSH--ESSSPEEMAEIIVSYLDNKGYLQ 205 (207)
T ss_pred cccCCCCcEEEEccC--CCCCHHHHHHHHHHHHhhcChhc
Confidence 999999999999872 34468889999999999999886
No 3
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.96 E-value=2.7e-29 Score=203.94 Aligned_cols=152 Identities=63% Similarity=1.067 Sum_probs=132.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC 180 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~ 180 (279)
+|.+|||+|.||||||||++.|...|...+...++||||.++..+..+++|+.+++.++++++.+++.++.+.|.+++++
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva 80 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVA 80 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 58899999999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675 181 LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 181 ~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
..++.+..|+.+|+.+.+..|++||+++|.+.|.+|+++++|++...|++.+++++..+|++|..|+++|+|
T Consensus 81 ~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD~KglY~ka~~g~i~~~~Gvd~~ye~P~~pdl~idt 152 (156)
T PF01583_consen 81 FISPYREDREWARELIPNERFIEVYVDCPLEVCRKRDPKGLYAKARAGEIKNFTGVDDPYEEPLNPDLVIDT 152 (156)
T ss_dssp ----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHTTTSHHHHHHTTSSSSHTTTSS-----SS-SEEEET
T ss_pred eccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhCchhHHHHhhCCCcCCccccccCCCCCCCCeEEEeC
Confidence 999999999999999997789999999999999999999999999999999999999999999999999999
No 4
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.94 E-value=4.6e-26 Score=224.42 Aligned_cols=248 Identities=44% Similarity=0.758 Sum_probs=211.1
Q ss_pred cccCCCcceeeeeeccccc--CccccccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEeecceeec
Q 023675 15 AICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKR 92 (279)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 92 (279)
.|..||.|.|.|.++.|++ +|.+++.+|.|.++|+-... +.|.|.+.... +...+++|....++..
T Consensus 383 ~l~~g~~~~v~l~~~~pi~~e~~~~~~~lGRfilrdr~~~~-----------Tva~G~I~~~~-~~~~~~~~~~~~~~~~ 450 (632)
T PRK05506 383 TLELNEIGRCNLSTDAPIAFDPYARNRTTGSFILIDRLTNA-----------TVGAGMIDFAL-RRATNVHWQASDVSRE 450 (632)
T ss_pred eeCCCCEEEEEEEECCEEeeeeccccccCceEEEEeccCCc-----------eEEEEEECccc-cccccccccccccCHH
Confidence 4889999999999999998 99999999999999988877 55555553111 2456788887766665
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHh
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFAD 172 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 172 (279)
.+.+...++|.+++++|.+||||||+++.|+..|...+.+.+++++|.+++.+.....|+++++..+++.+...+..+..
T Consensus 451 ~~~~~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~ 530 (632)
T PRK05506 451 ARAARKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMAD 530 (632)
T ss_pred HHHHHhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 56566667899999999999999999999999986556678999999999888777789999999999998888888888
Q ss_pred CCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675 173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 173 ~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
.|..+++++..+.+..|+.+++++....+..+||+.|.+.+.+|..++++...+.+++..+...+.+||+|..++++|++
T Consensus 531 ~G~~Vivda~~~~~~~R~~~r~l~~~~~~~~v~L~~~~e~~~~R~~r~L~~~~~~~~l~~l~~~r~~y~~P~~a~~~Id~ 610 (632)
T PRK05506 531 AGLIVLVSFISPFREERELARALHGEGEFVEVFVDTPLEVCEARDPKGLYAKARAGEIKNFTGIDSPYEAPENPELRLDT 610 (632)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCeEEEEECCCHHHHHhhCCcchhhhccccccccccccccCCCCCCCCeEEEeC
Confidence 89888998888888889999988876567779999999999999988888766678888999999999988778899998
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCc
Q 023675 253 MGDDCPSPADMVETVVSYLDENGFL 277 (279)
Q Consensus 253 ~~~~~~~~~e~~~~Il~~l~~~~~~ 277 (279)
+..++++++++|+++|..++++
T Consensus 611 ---~~~s~~e~v~~Ii~~l~~~~~~ 632 (632)
T PRK05506 611 ---TGRSPEELAEQVLELLRRRGAI 632 (632)
T ss_pred ---CCCCHHHHHHHHHHHHHHcCCC
Confidence 7889999999999999887764
No 5
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.93 E-value=7.6e-25 Score=186.30 Aligned_cols=194 Identities=55% Similarity=0.919 Sum_probs=164.7
Q ss_pred eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHH
Q 023675 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR 161 (279)
Q Consensus 82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~ 161 (279)
+.|....++..++.....++|.+++|+|+|||||||+++.|++.+...+.|.+++|+|++++.+...+++.++++.++++
T Consensus 4 ~~~~~~~v~~~~~~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~ 83 (198)
T PRK03846 4 IVWHQHPVTKAQREQLHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIR 83 (198)
T ss_pred cccccCCCCHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHH
Confidence 45666666676777677789999999999999999999999998866677899999999987665667888888888888
Q ss_pred HHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCC
Q 023675 162 RIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE 241 (279)
Q Consensus 162 ~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~ 241 (279)
++...+..+...|..++.++.++.+..|+.++.++....++.|||++|.+.+.+|..++++...+.+++..+...+.+|+
T Consensus 84 ~l~~~a~~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~~~i~V~L~~~~e~~~~R~~r~l~~~~~~~~~~~l~~~r~~Y~ 163 (198)
T PRK03846 84 RVGEVAKLMVDAGLVVLTAFISPHRAERQMVRERLGEGEFIEVFVDTPLAICEARDPKGLYKKARAGEIRNFTGIDSVYE 163 (198)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCCCHHHHHHHHHHcccCCEEEEEEcCCHHHHHhcCchhHHHHhhcCCccCcccccccCC
Confidence 88888887777888888888877788899999998876776799999999999998777776665677888888899977
Q ss_pred CCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675 242 PPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278 (279)
Q Consensus 242 ~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~ 278 (279)
+|..++++|++ +..++++++++|+++|+.+++++
T Consensus 164 ~p~~ad~~Idt---~~~~~~~vv~~Il~~l~~~~~~~ 197 (198)
T PRK03846 164 APESPEIHLDT---GEQLVTNLVEQLLDYLRQRDIIR 197 (198)
T ss_pred CCCCCCEEEEC---CCCCHHHHHHHHHHHHHHcCCCC
Confidence 77778999999 78899999999999999988764
No 6
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=2.9e-25 Score=197.36 Aligned_cols=178 Identities=54% Similarity=0.906 Sum_probs=167.5
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcch
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC 177 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (279)
..-+|.++|+.|.||+||||+.-+|.+.|..-+-..+-+|||+++.++...++|+++++.+.++++.+++.+|.+.|++.
T Consensus 46 ~gfrgctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvc 125 (627)
T KOG4238|consen 46 GGFRGCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVC 125 (627)
T ss_pred CCccceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCcee
Confidence 45579999999999999999999999999877777889999999999999999999999999999999999999999999
Q ss_pred hcccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCC
Q 023675 178 IACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGD 255 (279)
Q Consensus 178 i~~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~ 255 (279)
+..+.++.+++|.-+|.+-... +|+++++|.|++.|.+|++++||+..+.|++..|+++++.|+.|+.+++++++
T Consensus 126 itsfispf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd~k~lykkaragei~gftgids~ye~pe~~e~vl~t--- 202 (627)
T KOG4238|consen 126 ITSFISPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRDVKGLYKKARAGEIKGFTGIDSDYEKPETPERVLKT--- 202 (627)
T ss_pred eehhcChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcChHHHHhhhhccccccccccccccCCCCChhHHhhc---
Confidence 9999999999998899887654 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcc
Q 023675 256 DCPSPADMVETVVSYLDENGFLR 278 (279)
Q Consensus 256 ~~~~~~e~~~~Il~~l~~~~~~~ 278 (279)
+..+..++++++++.|+++++++
T Consensus 203 ~~~~v~~cvqqvve~lq~~~ivp 225 (627)
T KOG4238|consen 203 NLSTVSDCVQQVVELLQEQNIVP 225 (627)
T ss_pred CCchHHHHHHHHHHHHHhcCCCh
Confidence 78899999999999999988764
No 7
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.90 E-value=2.3e-23 Score=175.04 Aligned_cols=180 Identities=58% Similarity=0.994 Sum_probs=156.0
Q ss_pred eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHH
Q 023675 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAK 168 (279)
Q Consensus 89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 168 (279)
+++.++.+...++|++++|+|++||||||+++.|.+.+..++.+.+++++|++++.+....+|..+++..++..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (184)
T TIGR00455 5 ITKDERQALNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAK 84 (184)
T ss_pred CCHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHH
Confidence 45556667788999999999999999999999999998655556789999999887777778888888888888888888
Q ss_pred HHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCce
Q 023675 169 LFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEI 248 (279)
Q Consensus 169 ~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~ 248 (279)
.+...|..++.++..+....|+.++.++...+|+.+|+++|.+.+.+|..++++...+.+++..+...+.+||+|..+++
T Consensus 85 ~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~l~~~~~~y~~p~~adl 164 (184)
T TIGR00455 85 LFVRNGIIVITSFISPYRADRQMVRELIEKGEFIEVFVDCPLEVCEQRDPKGLYKKARNGEIKGFTGIDSPYEAPENPEV 164 (184)
T ss_pred HHHcCCCEEEEecCCCCHHHHHHHHHhCcCCCeEEEEEeCCHHHHHHhCchhHHHHHhcCCccCcccccCCCCCCCCCcE
Confidence 88888999999988888888999999888767888999999999999988788876677888888888999998888999
Q ss_pred EEEccCCCCCCHHHHHHHHHHHH
Q 023675 249 VLKQMGDDCPSPADMVETVVSYL 271 (279)
Q Consensus 249 ~i~~~~~~~~~~~e~~~~Il~~l 271 (279)
+|++ +..++++++++|+.+|
T Consensus 165 ~Idt---~~~~~~~~~~~i~~~l 184 (184)
T TIGR00455 165 VLDT---DQNDREECVGQIIEKL 184 (184)
T ss_pred EEEC---CCCCHHHHHHHHHHhC
Confidence 9999 7889999999998764
No 8
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.89 E-value=6.7e-22 Score=164.77 Aligned_cols=173 Identities=51% Similarity=0.861 Sum_probs=141.3
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA 179 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~ 179 (279)
++|++++|+|++||||||+++.|++.+...+...+++|+|.+++.+...+.+..+++..+++.+..++..+...|..++.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~ 81 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLV 81 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 68999999999999999999999999954444466799999877666666777888777777777777766666776666
Q ss_pred ccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCC
Q 023675 180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPS 259 (279)
Q Consensus 180 ~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~ 259 (279)
+..++....++.++.+.. .+..+|+++|.+.+.+|..++++...+.+++..++..+.+||.|..+++++++ +..+
T Consensus 82 ~~~~~~~~~~~~l~~~~~--~~~~v~l~~~~e~~~~R~~~~l~~~~~~~~i~~~~~~~~~~~~p~~ad~~i~~---~~~~ 156 (175)
T PRK00889 82 SAISPYRETREEVRANIG--NFLEVFVDAPLEVCEQRDVKGLYAKARAGEIKHFTGIDDPYEPPLNPEVECRT---DLES 156 (175)
T ss_pred ecCCCCHHHHHHHHhhcC--CeEEEEEcCCHHHHHHhCcccHHHHHHcCCCCCCcccCCCCCCCCCCcEEEEC---CCCC
Confidence 666666666666766653 56779999999999999877788766678888888899999988778899998 7889
Q ss_pred HHHHHHHHHHHHHhCCCc
Q 023675 260 PADMVETVVSYLDENGFL 277 (279)
Q Consensus 260 ~~e~~~~Il~~l~~~~~~ 277 (279)
+++++++|+++|...|++
T Consensus 157 ~~~~~~~i~~~l~~~~~~ 174 (175)
T PRK00889 157 LEESVDKVLQKLEELGYL 174 (175)
T ss_pred HHHHHHHHHHHHHHcCCC
Confidence 999999999999988765
No 9
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=3e-22 Score=192.51 Aligned_cols=163 Identities=20% Similarity=0.207 Sum_probs=113.1
Q ss_pred ccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEeecceeecCCc--------ceeccCCeEEEEEcC
Q 023675 39 SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGL 110 (279)
Q Consensus 39 ~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------sl~i~~g~~i~lvG~ 110 (279)
+...-|+.+||.|.+.. . |...|. ...+.|+|+||+|+|+.|. ||+++||++++||||
T Consensus 437 As~rvFel~dr~P~i~~----------~--G~~~p~--~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGP 502 (716)
T KOG0058|consen 437 ASERVFELMDRKPRIPL----------T--GTLAPD--HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGP 502 (716)
T ss_pred hHHHHHHHhccCCCCCC----------C--Cccccc--cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECC
Confidence 34445778888877610 1 222211 3568899999999999875 899999999999999
Q ss_pred CCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccccCCCCCccc-------------------HHHHHHHHHHHH
Q 023675 111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAED-------------------RVENIRRIGEVA 167 (279)
Q Consensus 111 sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~~~~~~~~~-------------------~~~~~~~v~~~~ 167 (279)
|||||||++++|.++| +|.+|.|.+||.++++ .+...+++..++ ..+.+...++.+
T Consensus 503 SGsGKSTiasLL~rfY-~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~A 581 (716)
T KOG0058|consen 503 SGSGKSTIASLLLRFY-DPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMA 581 (716)
T ss_pred CCCCHHHHHHHHHHhc-CCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 9999999999999999 9999999999999963 122222221111 011111111111
Q ss_pred --HHHH---hCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 168 --KLFA---DAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 168 --~~~~---~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
+.|- ..|.. .-+..++++|+|| ++||+++++|.+ ++|||.++.|+.--.
T Consensus 582 Nah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~V--LILDEATSALDaeSE 640 (716)
T KOG0058|consen 582 NAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRV--LILDEATSALDAESE 640 (716)
T ss_pred ChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCE--EEEechhhhcchhhH
Confidence 1111 11222 2344689999999 999999999988 999999999987653
No 10
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.85 E-value=9.7e-21 Score=183.54 Aligned_cols=178 Identities=49% Similarity=0.806 Sum_probs=151.8
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcc
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI 176 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 176 (279)
..++|.+|+|+|+|||||||+++.|++.+.. .+...+++|+|.+++.+..+.+|+..++..++.++...+......|..
T Consensus 388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~ 467 (568)
T PRK05537 388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGI 467 (568)
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 4567999999999999999999999999954 444468999999988888888999999888888777667666677888
Q ss_pred hhcccCChHHHHHHHHHHhCCC-CCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCC
Q 023675 177 CIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGD 255 (279)
Q Consensus 177 ~i~~~~~~~~~~r~~ar~l~~~-~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~ 255 (279)
++.+..++....|+.++.+++. ..|+++||+.|.+.|.+|..++++...+.+.+..++..|.+||.|..++++|++
T Consensus 468 vI~~~~~p~~~~R~~nr~llk~~g~fivV~L~~p~e~l~~R~rr~Ll~~~~~~~i~~l~~~R~~yy~p~~Adl~IDt--- 544 (568)
T PRK05537 468 AICAPIAPYRATRREVREMIEAYGGFIEVHVATPLEVCEQRDRKGLYAKAREGKIKGFTGISDPYEPPANPELVIDT--- 544 (568)
T ss_pred EEEEeCCchHHHHHHHHHHHhhcCCEEEEEEcCCHHHHHHhccccccccchhchhhccccccccccCCCCCcEEEEC---
Confidence 8888888888888888888875 346679999999999999988877655567788899999999998778999999
Q ss_pred CCCCHHHHHHHHHHHHHhCCCcc
Q 023675 256 DCPSPADMVETVVSYLDENGFLR 278 (279)
Q Consensus 256 ~~~~~~e~~~~Il~~l~~~~~~~ 278 (279)
+..++++++++|+.+|++.|+++
T Consensus 545 ~~~s~~eiv~~Il~~L~~~g~~~ 567 (568)
T PRK05537 545 TNVTPDECAHKILLYLEEKGYLR 567 (568)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC
Confidence 78899999999999999999875
No 11
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.84 E-value=3.6e-21 Score=161.66 Aligned_cols=139 Identities=22% Similarity=0.229 Sum_probs=98.9
Q ss_pred eEEeecceee-----cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCCCC
Q 023675 82 ILWHKNSVDK-----RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~-----~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~~~ 151 (279)
|+++|+.-+| ..+.++++++|++++|+||||||||||+++|.++- .+++|.|++||+++.. .++..+++
T Consensus 3 i~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-EPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-CCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 3444554444 45669999999999999999999999999999987 9999999999976632 12233344
Q ss_pred CcccHH--------HH------------HHHH-HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 152 KAEDRV--------EN------------IRRI-GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 152 ~~~~~~--------~~------------~~~v-~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
.++... ++ .+.. .....++..-|+. .+...+|++++|| ++||+++-+|++ ++
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~v--mL 159 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKV--ML 159 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCE--Ee
Confidence 333210 00 0000 1112233333433 3566799999999 999999999988 99
Q ss_pred EeCCccchhccChhhHHH
Q 023675 206 MDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~ 223 (279)
+|||++.|++-+....++
T Consensus 160 FDEPTSALDPElv~EVL~ 177 (240)
T COG1126 160 FDEPTSALDPELVGEVLD 177 (240)
T ss_pred ecCCcccCCHHHHHHHHH
Confidence 999999999998877443
No 12
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.83 E-value=3.7e-21 Score=167.86 Aligned_cols=142 Identities=19% Similarity=0.163 Sum_probs=101.2
Q ss_pred CeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc----ccCCCC
Q 023675 81 NILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~----~~~~~~ 151 (279)
.++.++++|+|..+. ||++++|++++|+||||||||||+|+|+|++ .|.+|+|++||.++.+.- ...++|
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l-~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL-KPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 367889999998543 9999999999999999999999999999999 899999999999885321 111111
Q ss_pred Cccc-----------H--------HHHHH-----HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 152 KAED-----------R--------VENIR-----RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 152 ~~~~-----------~--------~~~~~-----~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
-++. . ..++. ....+...+...++.. .+..+|++++|| -+|++++.++++
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~i- 159 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPI- 159 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCE-
Confidence 1110 0 00000 0011112222333322 355689999999 789999999998
Q ss_pred EEEEeCCccchhccChhhHHHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++||||++.|+-+.+-.+++.+
T Consensus 160 -LLLDEPTs~LDi~~Q~evl~ll 181 (258)
T COG1120 160 -LLLDEPTSHLDIAHQIEVLELL 181 (258)
T ss_pred -EEeCCCccccCHHHHHHHHHHH
Confidence 9999999999999887766543
No 13
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=1.9e-20 Score=189.33 Aligned_cols=176 Identities=22% Similarity=0.247 Sum_probs=120.8
Q ss_pred ccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEeecceeecCCc--------ceeccCCeEEEEEcC
Q 023675 39 SRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGL 110 (279)
Q Consensus 39 ~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--------sl~i~~g~~i~lvG~ 110 (279)
...--|+.||+.+.+++.. .+..... ...++|+|+|+.|+|+.|. ||.+++|++++|||+
T Consensus 320 aa~~I~~~i~~~~~i~~~~--------~~~~~~~----~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~ 387 (1228)
T KOG0055|consen 320 AAYRIFETIDRKPSIDPYS--------KGGRVLS----SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGP 387 (1228)
T ss_pred chHHHHHHhcCCCCCCccc--------ccCCccc----ccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECC
Confidence 3444577888888773221 0111222 4568999999999999875 899999999999999
Q ss_pred CCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccccCCCCCcccH-------HHH---------HHHHHHHH---
Q 023675 111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDR-------VEN---------IRRIGEVA--- 167 (279)
Q Consensus 111 sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~~~~~~~~~~-------~~~---------~~~v~~~~--- 167 (279)
|||||||+.++|+|+| +|.+|.|++||.+++. +++..++...++. ++. ...+.+.+
T Consensus 388 SGsGKST~i~LL~Rfy-dP~~G~V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~a 466 (1228)
T KOG0055|consen 388 SGSGKSTLIQLLARFY-DPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAA 466 (1228)
T ss_pred CCCCHHHHHHHHHHhc-CCCCceEEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHc
Confidence 9999999999999999 9999999999999863 2333333333221 000 11111111
Q ss_pred -------HHHHhC--CcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh---hHHHHHhCCC
Q 023675 168 -------KLFADA--GVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK---GLYKLAREGK 229 (279)
Q Consensus 168 -------~~~~~~--~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~---~l~~~~~~~~ 229 (279)
.+.... -+..-+..++++++|| ++||+++++|++ ++|||+++.|+.-..+ ..++..+.|+
T Consensus 467 na~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~I--LLLDEaTSaLD~~se~~Vq~ALd~~~~gr 539 (1228)
T KOG0055|consen 467 NAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKI--LLLDEATSALDAESERVVQEALDKASKGR 539 (1228)
T ss_pred cHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCE--EEecCcccccCHHHHHHHHHHHHHhhcCC
Confidence 111111 1112344589999999 999999999988 9999999988876544 3445556666
No 14
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.82 E-value=3.5e-20 Score=187.43 Aligned_cols=150 Identities=23% Similarity=0.251 Sum_probs=108.0
Q ss_pred cCCCCeEEeecceeecCCc--------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----c
Q 023675 77 AKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----G 144 (279)
Q Consensus 77 ~~~~~i~~~~~~~~~~~~~--------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~ 144 (279)
...++|+++|+.|+|+.|. |+++++|++++|||||||||||+..+|.|+| +|..|.|.+||+++++ +
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY-dp~~G~V~IDg~dik~lnl~~ 1061 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY-DPDAGKVKIDGVDIKDLNLKW 1061 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeEEECCcccccCCHHH
Confidence 4568899999999999877 8999999999999999999999999999999 9999999999999963 2
Q ss_pred cccCCCCCcccH-------HHH---------HHHHHHHHHHHHhC--------Cc----chhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAEDR-------VEN---------IRRIGEVAKLFADA--------GV----ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~~~-------~~~---------~~~v~~~~~~~~~~--------~~----~~i~~~~~~~~~~r-~~ar~l 195 (279)
++..+++..++. +++ ...+.+.+.+.+.+ |+ ..-+..++++|+|| ++||++
T Consensus 1062 LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1062 LRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred HHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence 222222222211 111 11122222221111 21 12355689999999 999999
Q ss_pred CCCCCccEEEEeCCccchhccCh---hhHHHHHhCCC
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDP---KGLYKLAREGK 229 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~---~~l~~~~~~~~ 229 (279)
+++|++ ++|||.++.|+..-. +.-+++.+.++
T Consensus 1142 lRnPkI--LLLDEATSALDseSErvVQeALd~a~~gR 1176 (1228)
T KOG0055|consen 1142 LRNPKI--LLLDEATSALDSESERVVQEALDRAMEGR 1176 (1228)
T ss_pred HcCCCe--eeeeccchhhhhhhHHHHHHHHHHhhcCC
Confidence 999998 999999998876544 33444555564
No 15
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=5.4e-20 Score=157.88 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=99.0
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK 152 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~ 152 (279)
|+|+|++..|.+ +.||++++|++++|+|||||||||++++|.+++ .|++|.|+++|.+++.. ++..++|.
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-ept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-EPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-CCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 567777777764 449999999999999999999999999999999 99999999999998642 23333332
Q ss_pred ccc-----------------------HHHHHHHHHHHHHHHHh-C--CcchhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 153 AED-----------------------RVENIRRIGEVAKLFAD-A--GVICIACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 153 ~~~-----------------------~~~~~~~v~~~~~~~~~-~--~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
-++ ..+..+++.++..++.- . -..-+...+|++++|| -.+|+++.+|++ ++
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i--lL 158 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI--LL 158 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe--Ee
Confidence 221 11112222222222211 0 0112455689999999 899999999998 99
Q ss_pred EeCCccchhccChhhHHH
Q 023675 206 MDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~ 223 (279)
+|||+..++.-.++.+..
T Consensus 159 MDEPFgALDpI~R~~lQ~ 176 (309)
T COG1125 159 MDEPFGALDPITRKQLQE 176 (309)
T ss_pred ecCCccccChhhHHHHHH
Confidence 999999998876655443
No 16
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.81 E-value=9.5e-20 Score=164.75 Aligned_cols=139 Identities=20% Similarity=0.215 Sum_probs=104.5
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--cc------
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NR------ 147 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~------ 147 (279)
.|+++|+..+|.+. .|+++..|++++|+|||||||||++++|+|+. .|++|.|+++|.++.+.- ..
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-EPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhHCCEEEEe
Confidence 36777887777765 59999999999999999999999999999999 999999999999986411 01
Q ss_pred -------------CCCCCccc----HHHHHHHHHHHHHHHHhCCcc-hhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 148 -------------DLSFKAED----RVENIRRIGEVAKLFADAGVI-CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 148 -------------~~~~~~~~----~~~~~~~v~~~~~~~~~~~~~-~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
++.|...- ..+..+++.+++..+.-..+. .....+|++++|| +++|+++.+|++ +++||
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v--~L~DE 159 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKV--FLLDE 159 (338)
T ss_pred CCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCE--EEecC
Confidence 11222111 123344555555554322222 2466799999999 999999999998 99999
Q ss_pred CccchhccChhhHH
Q 023675 209 PLQVCEARDPKGLY 222 (279)
Q Consensus 209 p~~~l~~R~~~~l~ 222 (279)
|++.|+.++...+-
T Consensus 160 PlSnLDa~lR~~mr 173 (338)
T COG3839 160 PLSNLDAKLRVLMR 173 (338)
T ss_pred chhHhhHHHHHHHH
Confidence 99999998876543
No 17
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.9e-19 Score=154.90 Aligned_cols=130 Identities=21% Similarity=0.253 Sum_probs=90.9
Q ss_pred eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc--HHHHHH-----
Q 023675 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED--RVENIR----- 161 (279)
Q Consensus 89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~--~~~~~~----- 161 (279)
+...++.||++.+||+++|+||||||||||+|+|+|+. .|++|+|.++|+.+. ....+.+|.+++ +..|..
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~V~~~g~~v~-~p~~~~~~vFQ~~~LlPW~Tv~~NV 93 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGEVLLDGRPVT-GPGPDIGYVFQEDALLPWLTVLDNV 93 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCcccC-CCCCCEEEEeccCcccchhhHHhhh
Confidence 33445669999999999999999999999999999999 999999999999872 211111211111 000000
Q ss_pred -------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 162 -------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 162 -------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
........+...|+. .....+|++++|| ++||+++.+|++ ++||||+..|+.-.+..+.
T Consensus 94 ~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l--LLlDEPFgALDalTR~~lq 170 (248)
T COG1116 94 ALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL--LLLDEPFGALDALTREELQ 170 (248)
T ss_pred eehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE--EEEcCCcchhhHHHHHHHH
Confidence 001122222333332 2455689999999 999999999998 9999999999887655433
No 18
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=1.3e-19 Score=154.07 Aligned_cols=142 Identities=18% Similarity=0.216 Sum_probs=101.8
Q ss_pred CeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------cc
Q 023675 81 NILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------NR 147 (279)
Q Consensus 81 ~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-------~~ 147 (279)
.|++++++.+|+.+ .||.+++||+++|+|+||||||||+++|.++. +++.|+|+++|.++.... ..
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcceEEecccchhccchHHHHHHHH
Confidence 47888998889543 39999999999999999999999999999987 999999999998874321 22
Q ss_pred CCCCCcccH-------------------HHHHHH---------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHH
Q 023675 148 DLSFKAEDR-------------------VENIRR---------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRS 194 (279)
Q Consensus 148 ~~~~~~~~~-------------------~~~~~~---------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~ 194 (279)
.+++.++.. ..+++. ..+....+...|+.. -...+|++++|| ++||+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARa 161 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARA 161 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHH
Confidence 233322211 000000 011112222333332 234688999999 99999
Q ss_pred hCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++.+|++ ++-|||.+.|++...+.+++.+
T Consensus 162 L~Q~pki--ILADEPvasLDp~~a~~Vm~~l 190 (258)
T COG3638 162 LVQQPKI--ILADEPVASLDPESAKKVMDIL 190 (258)
T ss_pred HhcCCCE--EecCCcccccChhhHHHHHHHH
Confidence 9999998 9999999999999988755443
No 19
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.80 E-value=1.1e-19 Score=179.50 Aligned_cols=146 Identities=21% Similarity=0.207 Sum_probs=107.4
Q ss_pred cCCCCeEEeecceeecCCc-------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----cc
Q 023675 77 AKSTNILWHKNSVDKRDRQ-------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GL 145 (279)
Q Consensus 77 ~~~~~i~~~~~~~~~~~~~-------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~ 145 (279)
...+.|+++|++|+|..+. |+++++|+.++|+|.||||||||+|+|.|+| .|..|.|++||.|+.+ .+
T Consensus 467 ~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~I~~dg~dl~~i~~~~l 545 (709)
T COG2274 467 KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGRILLDGVDLNDIDLASL 545 (709)
T ss_pred ccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEeHHhcCHHHH
Confidence 4568899999999998653 8999999999999999999999999999999 9999999999999842 12
Q ss_pred ccCCCCCcccH-------H------------HHHHHHHHHHH---HHH--hCCc----chhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAEDR-------V------------ENIRRIGEVAK---LFA--DAGV----ICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~~~-------~------------~~~~~v~~~~~---~~~--~~~~----~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
+..+++.+++. + +.+....+.+. ... ..|+ ..-+..+|+||+|| .+||+++
T Consensus 546 R~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl 625 (709)
T COG2274 546 RRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALL 625 (709)
T ss_pred HhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhc
Confidence 22233322211 0 11111111111 111 1121 23456789999999 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ ++|||+++.++....+.+++.+
T Consensus 626 ~~P~I--LlLDEaTSaLD~~sE~~I~~~L 652 (709)
T COG2274 626 SKPKI--LLLDEATSALDPETEAIILQNL 652 (709)
T ss_pred cCCCE--EEEeCcccccCHhHHHHHHHHH
Confidence 99998 9999999999999888766543
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.2e-19 Score=156.04 Aligned_cols=142 Identities=21% Similarity=0.229 Sum_probs=104.4
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-cCCCCCcc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKAE 154 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-~~~~~~~~ 154 (279)
.|+++|++|+|.. +.||++.+|++++|+||||||||||+|+|.|++ .|.+|+|.+.|.+..+... ..++|.++
T Consensus 4 ~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred EEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcceEEEccccccccccCCeEEEcCc
Confidence 4788999999985 349999999999999999999999999999999 9999999999987643321 12333333
Q ss_pred cH---------------------HHHHHH-----HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 155 DR---------------------VENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 155 ~~---------------------~~~~~~-----v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
.. ..++++ -..+...+..-|... .+..+|++++|| -+||+++.+|++
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~l-- 160 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDL-- 160 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCE--
Confidence 11 001110 012223333334333 345689999999 889999999999
Q ss_pred EEEeCCccchhccChhhHHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++||||+..++....+.+++.+
T Consensus 161 llLDEP~~gvD~~~~~~i~~lL 182 (254)
T COG1121 161 LLLDEPFTGVDVAGQKEIYDLL 182 (254)
T ss_pred EEecCCcccCCHHHHHHHHHHH
Confidence 9999999999999888766543
No 21
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.79 E-value=3e-19 Score=153.02 Aligned_cols=134 Identities=21% Similarity=0.268 Sum_probs=96.5
Q ss_pred eecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCcccH-----
Q 023675 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAEDR----- 156 (279)
Q Consensus 90 ~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~~~----- 156 (279)
......+|++++|++++|+||||||||||+++|.++. .|++|.|+++|.++... .+..++|.++..
T Consensus 19 ~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld-~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ 97 (226)
T COG1136 19 EALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD-KPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPD 97 (226)
T ss_pred EecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCC
Confidence 3455669999999999999999999999999999999 88999999999887421 112233333311
Q ss_pred ---HHHHH------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675 157 ---VENIR------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (279)
Q Consensus 157 ---~~~~~------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~ 215 (279)
.+++. .......++...|+. .....+|++++|| ++||+++.+|++ |+.|||+..|+.
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~i--ilADEPTgnLD~ 175 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKI--ILADEPTGNLDS 175 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCe--EEeeCccccCCh
Confidence 11111 111122223332443 2356789999999 999999999998 999999999999
Q ss_pred cChhhHHHHHh
Q 023675 216 RDPKGLYKLAR 226 (279)
Q Consensus 216 R~~~~l~~~~~ 226 (279)
...+.+++.++
T Consensus 176 ~t~~~V~~ll~ 186 (226)
T COG1136 176 KTAKEVLELLR 186 (226)
T ss_pred HHHHHHHHHHH
Confidence 98877655433
No 22
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.79 E-value=1.4e-18 Score=141.37 Aligned_cols=149 Identities=68% Similarity=1.138 Sum_probs=126.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCC
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~ 183 (279)
+++|+|++||||||+++.|++.+..++...+++++|.+++.+....++.++++.+.++.+...+..+...|..+++++..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~ 80 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS 80 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence 47899999999999999999998655566788999999877666667887777777777666666666778888888887
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 184 ~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
.....|..++.++...++..+++++|.+.+.+|..+++|.....+++..+.++..+|++|..+++++++
T Consensus 81 ~~~~~R~~~~~l~~~~~~~~i~l~~~~e~~~~R~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd02027 81 PYREDREAARKIIGGGDFLEVFVDTPLEVCEQRDPKGLYKKARAGEIKGFTGIDDPYEAPENPDLVLDT 149 (149)
T ss_pred CCHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhCchhhHHHHhCCCCCCccccCCCCCCCCCCeeEecC
Confidence 777788888888876678889999999999999999999999999999999999999988778887764
No 23
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.79 E-value=1e-18 Score=143.26 Aligned_cols=138 Identities=18% Similarity=0.203 Sum_probs=97.1
Q ss_pred EEeecceeecCCc---ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---------c-----
Q 023675 83 LWHKNSVDKRDRQ---QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---------L----- 145 (279)
Q Consensus 83 ~~~~~~~~~~~~~---sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---------~----- 145 (279)
.+.++.|+|..-. ++.++.|++++|+||||||||||+|+++|+. .|.+|.|+++|++.... +
T Consensus 3 ~L~~V~~~y~~~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnN 81 (231)
T COG3840 3 ALDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEILINGVDHTASPPAERPVSMLFQENN 81 (231)
T ss_pred cccceEEeeCcceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEEEcCeecCcCCcccCChhhhhhccc
Confidence 4556677776543 7899999999999999999999999999999 99999999999987421 0
Q ss_pred ---------ccCCCCCccc--HHHHHHHHHHHHHHHHhCCc-chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 146 ---------NRDLSFKAED--RVENIRRIGEVAKLFADAGV-ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 146 ---------~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~-~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
+..++.++.- ..+...++..++....-.+. .-+...+|+++++| +++|.++++-++ ++||||++.
T Consensus 82 LFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~Pi--lLLDEPFsA 159 (231)
T COG3840 82 LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPI--LLLDEPFSA 159 (231)
T ss_pred cchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCe--EEecCchhh
Confidence 0112222211 11222233333222111111 12455689999999 899999998777 899999999
Q ss_pred hhccChhhHHH
Q 023675 213 CEARDPKGLYK 223 (279)
Q Consensus 213 l~~R~~~~l~~ 223 (279)
+++.++..+..
T Consensus 160 LdP~LR~eMl~ 170 (231)
T COG3840 160 LDPALRAEMLA 170 (231)
T ss_pred cCHHHHHHHHH
Confidence 99999887554
No 24
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.79 E-value=5.7e-18 Score=141.17 Aligned_cols=169 Identities=34% Similarity=0.588 Sum_probs=129.3
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchh
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICI 178 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i 178 (279)
.++|.+++|+|+|||||||+++.|++.+..++.+.+++++|.+++.+. ..++......+...+...+...+...|..++
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI 82 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILG-HYGYDKQSRIEMALKRAKLAKFLADQGMIVI 82 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcC-CCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 468999999999999999999999999976778899999998875432 2234443333443344444554545676677
Q ss_pred cccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCC-
Q 023675 179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDC- 257 (279)
Q Consensus 179 ~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~- 257 (279)
.++.+.....++.++.++.. ++.+||++|.+.+.+|..++++.....+++..+...+.++|++. ++++|++ +.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~~~v~l~~~~e~~~~R~~~~l~~~~~~~~~~~~~~~~~~~~~~~-Ad~vI~~---~~~ 156 (176)
T PRK05541 83 VTTISMFDEIYAYNRKHLPN--YFEVYLKCDMEELIRRDQKGLYTKALKGEIKNVVGVDIPFDEPK-ADLVIDN---SCR 156 (176)
T ss_pred EEeCCcHHHHHHHHHhhcCC--eEEEEEeCCHHHHHHhchhhHHHHHHcCcccccccCCCcccCCC-CCEEEeC---CCC
Confidence 77666555556667766643 45699999999999999888887777788888999999999875 7999998 55
Q ss_pred CCHHHHHHHHHHHHHhC
Q 023675 258 PSPADMVETVVSYLDEN 274 (279)
Q Consensus 258 ~~~~e~~~~Il~~l~~~ 274 (279)
.++++.+++|+++|+.+
T Consensus 157 ~~~~~~v~~i~~~l~~~ 173 (176)
T PRK05541 157 TSLDEKVDLILNKLKLR 173 (176)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 58999999999998764
No 25
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.78 E-value=6.4e-19 Score=160.16 Aligned_cols=140 Identities=22% Similarity=0.247 Sum_probs=98.8
Q ss_pred CeEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675 81 NILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~ 153 (279)
.+++++++-+|. ++.||++++|+++.|.|||||||||++++|+|+. .|++|.|+++|.++..-- ..++++.+
T Consensus 5 ~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 5 ALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred eEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhhcccceee
Confidence 355666655555 5569999999999999999999999999999999 999999999999985210 11122211
Q ss_pred ccH------------------------HHHHHHHHHHHHHHHhCCc-chhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 154 EDR------------------------VENIRRIGEVAKLFADAGV-ICIACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 154 ~~~------------------------~~~~~~v~~~~~~~~~~~~-~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
++. .+..+++.+...+..-.++ .-....+|++++|| ++||+++.+|++ ++||
T Consensus 84 Q~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~v--LLLD 161 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKV--LLLD 161 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcch--hhhc
Confidence 111 1112233333322221111 12455688999999 999999999988 9999
Q ss_pred CCccchhccChhhHHH
Q 023675 208 VPLQVCEARDPKGLYK 223 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~~ 223 (279)
||++.|+.+++..+..
T Consensus 162 EPlSaLD~kLR~~mr~ 177 (352)
T COG3842 162 EPLSALDAKLREQMRK 177 (352)
T ss_pred CcccchhHHHHHHHHH
Confidence 9999999998776543
No 26
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.78 E-value=6.7e-19 Score=150.13 Aligned_cols=139 Identities=22% Similarity=0.225 Sum_probs=97.9
Q ss_pred CCCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cc
Q 023675 79 STNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LN 146 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~ 146 (279)
...|+++++.++|.++. +|++++|++++++|+||||||||++++.|++ .|++|+|+++|.++... +.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL-RPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC-CCCCCeEEEcCcchhccCHHHHHHHH
Confidence 34689999999998655 9999999999999999999999999999999 99999999999998421 11
Q ss_pred cCCCCCccc--------HHHH------------HHHHHHHHHH-HHhCCcchh-----cccCChHHHHH-HHHHHhCCCC
Q 023675 147 RDLSFKAED--------RVEN------------IRRIGEVAKL-FADAGVICI-----ACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 147 ~~~~~~~~~--------~~~~------------~~~v~~~~~~-~~~~~~~~i-----~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
...++-++. ..++ ...+.+++.. +..-|+... ..-+|++.+.| ++||+++-+|
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 111211110 0000 0011112211 222333322 33477788888 8999999999
Q ss_pred CccEEEEeCCccchhccChhh
Q 023675 200 DFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~ 220 (279)
++ +++|||+..+++-....
T Consensus 165 el--l~~DEPtsGLDPI~a~~ 183 (263)
T COG1127 165 EL--LFLDEPTSGLDPISAGV 183 (263)
T ss_pred CE--EEecCCCCCCCcchHHH
Confidence 98 99999999999876544
No 27
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.78 E-value=3.2e-19 Score=172.79 Aligned_cols=144 Identities=24% Similarity=0.188 Sum_probs=103.4
Q ss_pred CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCC
Q 023675 80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLS 150 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~ 150 (279)
+.|+++|++|+|+++ .||++++|+.++|+|+||||||||+++|+|++ +|++|.|++||.++++. ++..++
T Consensus 333 ~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~I~i~g~~i~~~~~~lr~~i~ 411 (529)
T TIGR02868 333 PTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGEVTLDGVSVSSLQDELRRRIS 411 (529)
T ss_pred ceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhHHHHHHhheE
Confidence 469999999999753 28999999999999999999999999999999 89999999999887532 111112
Q ss_pred CCccc-------------------HHHHHHHHHHHH---HHHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675 151 FKAED-------------------RVENIRRIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 151 ~~~~~-------------------~~~~~~~v~~~~---~~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
+.+++ ..+.+....+.+ .... ..|+. ..+..+|+|++|| .+||+++++|++
T Consensus 412 ~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~i 491 (529)
T TIGR02868 412 VFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPI 491 (529)
T ss_pred EEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCE
Confidence 11111 011111111111 1111 11222 2345689999999 999999999998
Q ss_pred cEEEEeCCccchhccChhhHHHHHh
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++||||++.++....+.+++.+.
T Consensus 492 --liLDE~TSaLD~~te~~I~~~l~ 514 (529)
T TIGR02868 492 --LLLDEPTEHLDAGTESELLEDLL 514 (529)
T ss_pred --EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999988877776554
No 28
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.77 E-value=3.7e-19 Score=164.37 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=115.2
Q ss_pred cCCCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccc
Q 023675 77 AKSTNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLN 146 (279)
Q Consensus 77 ~~~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~ 146 (279)
-..+.|+|+|++|.|..+. ||.+++|++++||||||+||||++++|-+++ +..+|.|.+||+|++. .++
T Consensus 533 ~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sGsI~iDgqdIrnvt~~SLR 611 (790)
T KOG0056|consen 533 VTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSGSITIDGQDIRNVTQSSLR 611 (790)
T ss_pred ccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCceEEEcCchHHHHHHHHHH
Confidence 4568899999999997644 9999999999999999999999999999999 8999999999999962 334
Q ss_pred cCCCCCcccH--------------------HHHHHHHHHHHH------HHHh---CCcchhcccCChHHHHH-HHHHHhC
Q 023675 147 RDLSFKAEDR--------------------VENIRRIGEVAK------LFAD---AGVICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 147 ~~~~~~~~~~--------------------~~~~~~v~~~~~------~~~~---~~~~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
..++..+++. .+.++. ++.++ .|.+ ..+..-+-.++++++|| +++|.++
T Consensus 612 s~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaA-AkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiL 690 (790)
T KOG0056|consen 612 SSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAA-AKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTIL 690 (790)
T ss_pred HhcCcccCcceeecceeeeheeecCCCCChHHHHHH-HHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHh
Confidence 4444444321 111111 11111 1111 01112333578899999 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHH---HHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYK---LAREGKVKGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~---~~~~~~~~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
++|.+ |+|||.++.++....+.+.+ +...++-..... +.+....++|.++..
T Consensus 691 K~P~i--IlLDEATSALDT~tER~IQaaL~rlca~RTtIVvA--HRLSTivnAD~ILvi 745 (790)
T KOG0056|consen 691 KAPSI--ILLDEATSALDTNTERAIQAALARLCANRTTIVVA--HRLSTIVNADLILVI 745 (790)
T ss_pred cCCcE--EEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEe--eeehheecccEEEEE
Confidence 99988 99999999998877665443 333444332222 222333346655544
No 29
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.77 E-value=3.8e-18 Score=140.72 Aligned_cols=137 Identities=21% Similarity=0.262 Sum_probs=102.9
Q ss_pred eEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccC
Q 023675 82 ILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRD 148 (279)
Q Consensus 82 i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~ 148 (279)
|+|++|+-.|... .||++++|++++|+|||||||||++|+|.+.. .|++|.|+++|.++... ++..
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceEEECCeecccccccccchhhhe
Confidence 6778888888653 38999999999999999999999999999999 99999999999998532 2233
Q ss_pred CCCCcccH-----------------------HHHHHHHHHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCC
Q 023675 149 LSFKAEDR-----------------------VENIRRIGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 149 ~~~~~~~~-----------------------~~~~~~v~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
++..+++. .+..+++... +..-|+ ......+|++++|| .+||+++.+|+
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~---L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEV---LDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHH---HHHhccchhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 33333322 1222222222 222222 23566789999999 99999999998
Q ss_pred ccEEEEeCCccchhccChhhHHHH
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+ ++.|||+..+++....++++.
T Consensus 158 v--LlADEPTGNLDp~~s~~im~l 179 (223)
T COG2884 158 V--LLADEPTGNLDPDLSWEIMRL 179 (223)
T ss_pred e--EeecCCCCCCChHHHHHHHHH
Confidence 8 899999999999998875543
No 30
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.76 E-value=2.1e-18 Score=151.87 Aligned_cols=135 Identities=20% Similarity=0.240 Sum_probs=96.5
Q ss_pred eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCCCCccc------
Q 023675 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAED------ 155 (279)
Q Consensus 89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~~~~~~------ 155 (279)
+.+.++.||++++|++++|+|.||+|||||.+++.++- .|++|.|++||+++..- .+..+++.++.
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLss 97 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE-RPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSS 97 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC-CCCCceEEEcCEecccCChHHHHHHHhhccEEecccccccc
Confidence 34445569999999999999999999999999999977 99999999999888421 12223322221
Q ss_pred -----------------HHHHHHHHHHHHHHHHh-CCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 156 -----------------RVENIRRIGEVAKLFAD-AGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 156 -----------------~~~~~~~v~~~~~~~~~-~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
..+...++.++..+..- .-...+...+|++++|| .+||+++.+|++ +++||+++.|++.
T Consensus 98 rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~i--LL~DEaTSALDP~ 175 (339)
T COG1135 98 RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKI--LLCDEATSALDPE 175 (339)
T ss_pred chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCE--EEecCccccCChH
Confidence 11222233333222111 01123566799999999 999999999998 9999999999999
Q ss_pred ChhhHHHHHh
Q 023675 217 DPKGLYKLAR 226 (279)
Q Consensus 217 ~~~~l~~~~~ 226 (279)
..+.+++.++
T Consensus 176 TT~sIL~LL~ 185 (339)
T COG1135 176 TTQSILELLK 185 (339)
T ss_pred HHHHHHHHHH
Confidence 8887555433
No 31
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=5.5e-18 Score=144.93 Aligned_cols=139 Identities=22% Similarity=0.270 Sum_probs=98.0
Q ss_pred eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----ccc
Q 023675 82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNR 147 (279)
Q Consensus 82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~ 147 (279)
++.+|+++.|.. +.||++.+|++++|+|+||||||||+++|+|+. .|..|.|.++|..+... ...
T Consensus 4 l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred EEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-CCCCceEEECCcccCccccchhhcc
Confidence 456666666654 349999999999999999999999999999998 89999999999766432 111
Q ss_pred CCCCCccc-------HHHH---HHH----------HHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCc
Q 023675 148 DLSFKAED-------RVEN---IRR----------IGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 148 ~~~~~~~~-------~~~~---~~~----------v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
.+.+.+++ ++.. +.. ..++..++...|+.. ....+|++++|| +++|++..+|++
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl 162 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL 162 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE
Confidence 11111111 1100 000 011333444444432 344589999999 999999999999
Q ss_pred cEEEEeCCccchhccChhhHHH
Q 023675 202 IEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
+++|||++.|+...+..+++
T Consensus 163 --LIlDEptSaLD~siQa~Iln 182 (252)
T COG1124 163 --LILDEPTSALDVSVQAQILN 182 (252)
T ss_pred --EEecCchhhhcHHHHHHHHH
Confidence 99999999999998876443
No 32
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=3.5e-18 Score=145.14 Aligned_cols=141 Identities=18% Similarity=0.244 Sum_probs=102.5
Q ss_pred eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCC
Q 023675 82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~ 151 (279)
++++++++.|. .+.||++++|++++|+|+||+||||++++|+|.. .+.+|+|.++|.|+... ....+.|
T Consensus 4 L~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~-~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 4 LEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV-RPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred eeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 45556555554 4669999999999999999999999999999999 88899999999999532 2233445
Q ss_pred CcccHH--------HHH-------------HH-HHHHHHHHHh--CCcchhcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675 152 KAEDRV--------ENI-------------RR-IGEVAKLFAD--AGVICIACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (279)
Q Consensus 152 ~~~~~~--------~~~-------------~~-v~~~~~~~~~--~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l 206 (279)
.++.++ +++ .. +.++..+|.. .-.......+|++++|+ +++|+++.+|++ ++|
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~Pkl--LLL 160 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKL--LLL 160 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCE--EEe
Confidence 555331 100 00 2223333321 11122455688888888 999999999998 999
Q ss_pred eCCccchhccChhhHHHHH
Q 023675 207 DVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 207 d~p~~~l~~R~~~~l~~~~ 225 (279)
|||.+.+.+...+.+++.+
T Consensus 161 DEPs~GLaP~iv~~I~~~i 179 (237)
T COG0410 161 DEPSEGLAPKIVEEIFEAI 179 (237)
T ss_pred cCCccCcCHHHHHHHHHHH
Confidence 9999999999998877543
No 33
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.75 E-value=1e-18 Score=174.89 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=105.6
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.|+++|++|+|+.. .||++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++++. ++.
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~ 553 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEILFDGIPREEIPREVLAN 553 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEeHHHCCHHHHHh
Confidence 3579999999999742 28999999999999999999999999999999 89999999999887531 111
Q ss_pred CCCCCcccH-------------------HHHHHHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAEDR-------------------VENIRRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~~~-------------------~~~~~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.+++.+++. .+.+....+.+ ..... .|+. ..+..+|+|++|| .++|+++++
T Consensus 554 ~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~ 633 (710)
T TIGR03796 554 SVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRN 633 (710)
T ss_pred heeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhC
Confidence 122211110 11111111111 11111 1222 2345689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
|++ ++||||++.++....+.+++.++.
T Consensus 634 p~i--liLDEptS~LD~~te~~i~~~l~~ 660 (710)
T TIGR03796 634 PSI--LILDEATSALDPETEKIIDDNLRR 660 (710)
T ss_pred CCE--EEEECccccCCHHHHHHHHHHHHh
Confidence 998 999999999999988888776654
No 34
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.75 E-value=1.3e-17 Score=139.65 Aligned_cols=128 Identities=22% Similarity=0.234 Sum_probs=93.8
Q ss_pred eecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHH
Q 023675 85 HKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN 159 (279)
Q Consensus 85 ~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~ 159 (279)
+++++.|.. ..||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++. .+.....+..
T Consensus 3 ~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~~g~~~~-------~~~~~~~~~~ 74 (180)
T cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILLDGKDLA-------SLSPKELARK 74 (180)
T ss_pred eEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECC-------cCCHHHHHHH
Confidence 444555543 448999999999999999999999999999999 899999999998875 2222222222
Q ss_pred HHHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 160 IRRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 160 ~~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+..+.+ .+...++. ..+..+++++++| .++++++.+|++ +++|||+..++....+.+++.+
T Consensus 75 i~~~~q---~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEP~~~LD~~~~~~~~~~l 140 (180)
T cd03214 75 IAYVPQ---ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPI--LLLDEPTSHLDIAHQIELLELL 140 (180)
T ss_pred HhHHHH---HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHH
Confidence 233333 22223322 2244578888888 899999999998 9999999999988776655443
No 35
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.5e-18 Score=162.31 Aligned_cols=147 Identities=18% Similarity=0.247 Sum_probs=110.1
Q ss_pred cCCCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccc
Q 023675 77 AKSTNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLN 146 (279)
Q Consensus 77 ~~~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~ 146 (279)
...+.|+|+|++|.|+++. ||++++|+.++|+|.|||||||++|+|.+++ + .+|.|++||.++.+ .++
T Consensus 347 ~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~-d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 347 LFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF-D-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred cCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh-c-cCCcEEECCeeHhhhChHHhh
Confidence 3446799999999998644 9999999999999999999999999999999 6 89999999999853 344
Q ss_pred cCCCCCcccHH----------------HHHHHHHHHHHH------HH--hCCc----chhcccCChHHHHH-HHHHHhCC
Q 023675 147 RDLSFKAEDRV----------------ENIRRIGEVAKL------FA--DAGV----ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 147 ~~~~~~~~~~~----------------~~~~~v~~~~~~------~~--~~~~----~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
.-+++.|++.. .....+.+.+.. +. ..|. ...+..++++++|| .++|++++
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lK 504 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLK 504 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhc
Confidence 44566555321 001112222221 11 1132 22344689999999 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
++++ +++||+++.++..-..++++.+..
T Consensus 505 da~I--l~~DEaTS~LD~~TE~~i~~~i~~ 532 (591)
T KOG0057|consen 505 DAPI--LLLDEATSALDSETEREILDMIMD 532 (591)
T ss_pred CCCe--EEecCcccccchhhHHHHHHHHHH
Confidence 9988 999999999999888887765543
No 36
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=6e-19 Score=150.85 Aligned_cols=143 Identities=16% Similarity=0.152 Sum_probs=100.5
Q ss_pred CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----ccCCCCCcc
Q 023675 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAE 154 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----~~~~~~~~~ 154 (279)
.++..++..+.+.++.||++.+|++++|+|||||||||++|+|+|+| .|++|+|.++|+++...- ...+.-+++
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ 86 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGTVIFRGRDITGLPPHRIARLGIARTFQ 86 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCceEEECCcccCCCCHHHHHhccceeecc
Confidence 46777888999999999999999999999999999999999999999 999999999999984210 000000000
Q ss_pred c--------HHH-----------------------HHHH-HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCC
Q 023675 155 D--------RVE-----------------------NIRR-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 155 ~--------~~~-----------------------~~~~-v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~ 197 (279)
. ..+ ..+. ..+...++...++.. ....++.+++.+ +++|+++.
T Consensus 87 ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~ 166 (250)
T COG0411 87 ITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALAT 166 (250)
T ss_pred cccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhc
Confidence 0 000 0011 111222222233332 233466666666 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|++ ++||||.+.+.......+.+.+
T Consensus 167 ~P~l--LLLDEPaAGln~~e~~~l~~~i 192 (250)
T COG0411 167 QPKL--LLLDEPAAGLNPEETEELAELI 192 (250)
T ss_pred CCCE--EEecCccCCCCHHHHHHHHHHH
Confidence 9998 9999999999998887765443
No 37
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=2e-18 Score=144.29 Aligned_cols=129 Identities=21% Similarity=0.244 Sum_probs=91.6
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc------ccCCCC
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSF 151 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------~~~~~~ 151 (279)
+++++++.|.. +.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++.... ...+++
T Consensus 2 ~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 2 ELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred EEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 45566666643 348999999999999999999999999999999 899999999998774210 011111
Q ss_pred CcccHHHHHHHHHHHHHHHHhCCcchhccc-CChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 152 KAEDRVENIRRIGEVAKLFADAGVICIACL-ISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~-~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.++. ..++....+..+... +|+++++| .++++++.+|++ +++|||+..++......+++.+
T Consensus 81 ~~q~-----------~~~~~~~t~~~~l~~~lS~G~~qr~~la~al~~~p~l--lilDEP~~~LD~~~~~~l~~~l 143 (178)
T cd03229 81 VFQD-----------FALFPHLTVLENIALGLSGGQQQRVALARALAMDPDV--LLLDEPTSALDPITRREVRALL 143 (178)
T ss_pred EecC-----------CccCCCCCHHHheeecCCHHHHHHHHHHHHHHCCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 1111 111111122222222 78888888 899999999998 9999999999988777665543
No 38
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.8e-18 Score=156.79 Aligned_cols=140 Identities=22% Similarity=0.237 Sum_probs=100.8
Q ss_pred CeEEeecceeecCCc-------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc----cCC
Q 023675 81 NILWHKNSVDKRDRQ-------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----RDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~-------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~----~~~ 149 (279)
.++++|++|+|++.. ||++.+||.++|+|+|||||||++++|.|.+ +|++|+|.++|.++...-. ..+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i~~~g~~~~~l~~~~~~e~i 414 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSITLNGVEIASLDEQALRETI 414 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCeeeECCcChhhCChhhHHHHH
Confidence 689999999998654 8999999999999999999999999999999 9999999999988752110 000
Q ss_pred -----------------------CCCcccHHHHHHHHHHHHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 150 -----------------------SFKAEDRVENIRRIGEVAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 150 -----------------------~~~~~~~~~~~~~v~~~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
.-++++..+..+.+. +..+..+. |+. .-+...|+++++| .++|.+++++
T Consensus 415 ~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvg-L~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 415 SVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVG-LEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred hhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcC-HHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 111111111111110 12222221 221 2334578999998 9999999998
Q ss_pred CccEEEEeCCccchhccChhhHHHH
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++ ++||||++.+++-..+.+++.
T Consensus 494 pl--~lLDEPTegLD~~TE~~vL~l 516 (573)
T COG4987 494 PL--WLLDEPTEGLDPITERQVLAL 516 (573)
T ss_pred Ce--EEecCCcccCChhhHHHHHHH
Confidence 88 999999999999887775554
No 39
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.74 E-value=3.9e-18 Score=166.58 Aligned_cols=145 Identities=20% Similarity=0.206 Sum_probs=104.2
Q ss_pred CCCCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 78 KSTNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
..+.|++++++|+|+. +.||++++|+.++|+|+|||||||++++|.|++ +|.+|.|++||.++++. ++.
T Consensus 325 ~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 325 TIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred CCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCEehhhcCHHHHHH
Confidence 3356999999999983 239999999999999999999999999999999 89999999999988532 111
Q ss_pred CCCCCcccH-------------------HHHHHHHHHHH---HHHHh--CCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAEDR-------------------VENIRRIGEVA---KLFAD--AGVIC----IACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~~~-------------------~~~~~~v~~~~---~~~~~--~~~~~----i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.+++.+++. .+.+......+ ..... .|+.. .+..+|++|+|| .+||+++++
T Consensus 404 ~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~ 483 (567)
T COG1132 404 RIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRN 483 (567)
T ss_pred hccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 222211100 01111111111 11111 13332 344689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
|++ ++|||+++.++....+.+.+.+
T Consensus 484 ~~I--LILDEaTSalD~~tE~~I~~~l 508 (567)
T COG1132 484 PPI--LILDEATSALDTETEALIQDAL 508 (567)
T ss_pred CCE--EEEeccccccCHHhHHHHHHHH
Confidence 988 9999999999999877766544
No 40
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.74 E-value=2.4e-18 Score=171.55 Aligned_cols=146 Identities=20% Similarity=0.157 Sum_probs=104.6
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.|+++|++|+|+.. .||++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++++. ++.
T Consensus 449 ~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~ 527 (686)
T TIGR03797 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSVFYDGQDLAGLDVQAVRR 527 (686)
T ss_pred CceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcCcCCHHHHHh
Confidence 3579999999999532 28999999999999999999999999999999 89999999999988531 111
Q ss_pred CCCCCccc-------HHHH-----------HHHHHHHH---HHHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 148 DLSFKAED-------RVEN-----------IRRIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 148 ~~~~~~~~-------~~~~-----------~~~v~~~~---~~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
.+++.+++ .+++ +....+.+ .... ..|.. ..+..+|+|++|| .+||+++++|
T Consensus 528 ~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p 607 (686)
T TIGR03797 528 QLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKP 607 (686)
T ss_pred ccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 12221111 0111 11111111 1111 11221 2345689999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHhC
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
++ ++||||++.++....+.+++.+..
T Consensus 608 ~i--LiLDEpTS~LD~~te~~i~~~L~~ 633 (686)
T TIGR03797 608 RI--LLFDEATSALDNRTQAIVSESLER 633 (686)
T ss_pred CE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 98 999999999999988887766554
No 41
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=1e-17 Score=138.15 Aligned_cols=119 Identities=19% Similarity=0.219 Sum_probs=90.7
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~ 157 (279)
++++++++|.+ +.+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++.. .....
T Consensus 2 ~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~-------~~~~~-- 71 (163)
T cd03216 2 ELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEILVDGKEVSF-------ASPRD-- 71 (163)
T ss_pred EEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCc-------CCHHH--
Confidence 45666777654 338999999999999999999999999999999 8999999999987741 11100
Q ss_pred HHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 158 ~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
. ... .+.....+++++++| .++++++.+|++ +++|||+..++....+.+.+.++
T Consensus 72 -~----------~~~--~i~~~~qLS~G~~qrl~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~ 126 (163)
T cd03216 72 -A----------RRA--GIAMVYQLSVGERQMVEIARALARNARL--LILDEPTAALTPAEVERLFKVIR 126 (163)
T ss_pred -H----------Hhc--CeEEEEecCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHH
Confidence 0 000 111122278888888 899999999998 99999999999888777655443
No 42
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=2.4e-18 Score=143.25 Aligned_cols=129 Identities=19% Similarity=0.252 Sum_probs=91.4
Q ss_pred EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675 83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE 154 (279)
Q Consensus 83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~ 154 (279)
++++++++|. +..+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 2 EVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred EEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 3455555554 3448999999999999999999999999999999 88999999999877421 1111222222
Q ss_pred cHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 155 DRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 155 ~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+. .++....+..+.. +++++++| .++++++.+|++ +++|||+..++....+.+++.+.
T Consensus 81 ~~-----------~~~~~~tv~~~~~-LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~l~ 139 (173)
T cd03230 81 EP-----------SLYENLTVRENLK-LSGGMKQRLALAQALLHDPEL--LILDEPTSGLDPESRREFWELLR 139 (173)
T ss_pred CC-----------ccccCCcHHHHhh-cCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence 11 1111111111111 78888888 899999999998 99999999999888777665443
No 43
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.73 E-value=4.3e-18 Score=141.71 Aligned_cols=127 Identities=21% Similarity=0.240 Sum_probs=91.2
Q ss_pred EEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675 83 LWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF 151 (279)
Q Consensus 83 ~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~ 151 (279)
++++++++|.. ..+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++... ....++|
T Consensus 2 ~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 2 EVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred EEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 45566666643 238999999999999999999999999999999 89999999999877421 0011112
Q ss_pred CcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 152 KAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.+++. .++. ..+..+. +|+++++| .++++++.+|++ +++|||+..++....+.+.+.++
T Consensus 81 ~~q~~-----------~~~~-~tv~~~l--LS~G~~qrv~la~al~~~p~~--lllDEPt~~LD~~~~~~l~~~l~ 140 (173)
T cd03246 81 LPQDD-----------ELFS-GSIAENI--LSGGQRQRLGLARALYGNPRI--LVLDEPNSHLDVEGERALNQAIA 140 (173)
T ss_pred ECCCC-----------cccc-CcHHHHC--cCHHHHHHHHHHHHHhcCCCE--EEEECCccccCHHHHHHHHHHHH
Confidence 11111 1111 0111111 78888888 999999999998 99999999999988777655443
No 44
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.73 E-value=5e-18 Score=169.78 Aligned_cols=142 Identities=22% Similarity=0.235 Sum_probs=101.3
Q ss_pred CCCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675 79 STNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN 146 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~ 146 (279)
.+.|+++|++|+|+++ .||++++|+.++|+|+||||||||+++|.|++ +|.+|.|++||.++.+. +.
T Consensus 476 ~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~lr 554 (711)
T TIGR00958 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQVLLDGVPLVQYDHHYLH 554 (711)
T ss_pred CCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHH
Confidence 3569999999999742 28999999999999999999999999999999 89999999999887421 11
Q ss_pred cCCCCCccc-------H------------HHHHHHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCC
Q 023675 147 RDLSFKAED-------R------------VENIRRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 147 ~~~~~~~~~-------~------------~~~~~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
..+++.+++ . .+.+....+.+ ..... .|+. ..+..+|++++|| .++|++++
T Consensus 555 ~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~ 634 (711)
T TIGR00958 555 RQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634 (711)
T ss_pred hhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhc
Confidence 111111110 0 11111111111 11111 1222 2344689999999 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
+|++ +++|||++.++....+.+++
T Consensus 635 ~p~I--LILDEpTSaLD~~te~~i~~ 658 (711)
T TIGR00958 635 KPRV--LILDEATSALDAECEQLLQE 658 (711)
T ss_pred CCCE--EEEEccccccCHHHHHHHHH
Confidence 9998 99999999999987766665
No 45
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=1.1e-17 Score=145.69 Aligned_cols=117 Identities=21% Similarity=0.268 Sum_probs=92.4
Q ss_pred ceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHH
Q 023675 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVA 167 (279)
Q Consensus 88 ~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~ 167 (279)
.+.+.+++||++.+|++++|||.|||||||++++|.+++ .|++|.|+++|+++. .+......+ + +.
T Consensus 25 ~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~i~f~g~~i~-------~~~~~~~~~---~---v~ 90 (268)
T COG4608 25 YVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGEILFEGKDIT-------KLSKEERRE---R---VL 90 (268)
T ss_pred ceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCceEEEcCcchh-------hcchhHHHH---H---HH
Confidence 356778889999999999999999999999999999999 899999999999986 333222222 2 22
Q ss_pred HHHHhCCc-----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 168 KLFADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 168 ~~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
.++..-|+ .-.....+++++|| .+||+++-+|++ +++|||++.++--.+..
T Consensus 91 elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~l--iV~DEpvSaLDvSiqaq 147 (268)
T COG4608 91 ELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKL--IVADEPVSALDVSVQAQ 147 (268)
T ss_pred HHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcE--EEecCchhhcchhHHHH
Confidence 22333232 22455688999999 999999999999 99999999999877665
No 46
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.4e-17 Score=142.02 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=98.6
Q ss_pred CeEEeecceeecCC---------cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc---CCccEEEEcCeecccc---c
Q 023675 81 NILWHKNSVDKRDR---------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG---L 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~~---------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~---~~~G~i~ldgd~i~~~---~ 145 (279)
.++|+|++|.|+.+ .+|++++|++++|+|+||||||||+++|+|++ . |.+|.|+++|.++... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~~~~G~i~i~g~~~~~~~~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRT-EGNVSVEGDIHYNGIPYKEFAEKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccC-CCCCCcceEEEECCEECccchhhh
Confidence 46899999999743 28999999999999999999999999999999 6 8899999999887421 1
Q ss_pred ccCCCCCcccHHHHH-HHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 146 NRDLSFKAEDRVENI-RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 146 ~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
...++|.+++..... ..+.+................+++++++| .++++++.+|++ +++|||+..++....+.+++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~l--lllDEPt~~LD~~~~~~~~~ 159 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASV--LCWDNSTRGLDSSTALEILK 159 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCE--EEEcCCCccCCHHHHHHHHH
Confidence 122233332210000 00111100000000122334578888888 899999999998 99999999999888777655
Q ss_pred HHh
Q 023675 224 LAR 226 (279)
Q Consensus 224 ~~~ 226 (279)
.+.
T Consensus 160 ~l~ 162 (202)
T cd03233 160 CIR 162 (202)
T ss_pred HHH
Confidence 433
No 47
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.72 E-value=9.5e-18 Score=167.49 Aligned_cols=145 Identities=23% Similarity=0.275 Sum_probs=103.5
Q ss_pred CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.|+++|++|+|+. +.||++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++.+. ++.
T Consensus 461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I~idg~~l~~~~~~~lr~ 539 (694)
T TIGR03375 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSVLLDGVDIRQIDPADLRR 539 (694)
T ss_pred cceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHh
Confidence 357999999999963 228999999999999999999999999999999 89999999999887531 112
Q ss_pred CCCCCcccH-------H------------HHHHHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAEDR-------V------------ENIRRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~~~-------~------------~~~~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.+++.+++. + +.+....+.+ ..... .|+. ..+..+|+|++|| .++|+++++
T Consensus 540 ~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~ 619 (694)
T TIGR03375 540 NIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRD 619 (694)
T ss_pred ccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 222222211 0 1111111111 11111 1221 2345689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHh
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
|++ ++||||++.++....+.+++.+.
T Consensus 620 p~i--liLDE~Ts~LD~~te~~i~~~l~ 645 (694)
T TIGR03375 620 PPI--LLLDEPTSAMDNRSEERFKDRLK 645 (694)
T ss_pred CCE--EEEeCCCCCCCHHHHHHHHHHHH
Confidence 998 99999999999988877665543
No 48
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=9.9e-18 Score=139.24 Aligned_cols=127 Identities=21% Similarity=0.254 Sum_probs=90.7
Q ss_pred EEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675 83 LWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF 151 (279)
Q Consensus 83 ~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~ 151 (279)
+++++++.|.. +.+|++++|++++|+|+||||||||+++|+|++ .|.+|.++++|.++... ....+++
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 2 EFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred EEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 34555555543 348999999999999999999999999999999 78999999999877421 0111222
Q ss_pred CcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 152 KAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.+++. .++. ..+..+. +++++++| .++++++.+|++ +++|||+..++......+.+.+.
T Consensus 81 ~~~~~-----------~~~~-~t~~e~l--LS~G~~~rl~la~al~~~p~l--lllDEP~~gLD~~~~~~l~~~l~ 140 (171)
T cd03228 81 VPQDP-----------FLFS-GTIRENI--LSGGQRQRIAIARALLRDPPI--LILDEATSALDPETEALILEALR 140 (171)
T ss_pred EcCCc-----------hhcc-chHHHHh--hCHHHHHHHHHHHHHhcCCCE--EEEECCCcCCCHHHHHHHHHHHH
Confidence 22211 1111 1111111 78888888 899999999988 99999999999988776665443
No 49
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.72 E-value=4.8e-18 Score=141.97 Aligned_cols=129 Identities=24% Similarity=0.218 Sum_probs=93.4
Q ss_pred EEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675 83 LWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK 152 (279)
Q Consensus 83 ~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~ 152 (279)
++++++++|..+ .+|++++|++++|+|+||||||||+++|+|.+ .|.+|+|.++|.++... ....++|.
T Consensus 2 ~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 2 SINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred EEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 456666666542 38999999999999999999999999999999 89999999999876311 01111222
Q ss_pred cccHHHHHHHHHHHHHHHHhCCcch-hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 153 AEDRVENIRRIGEVAKLFADAGVIC-IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 153 ~~~~~~~~~~v~~~~~~~~~~~~~~-i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++. .++. ..+.. +...+++++++| .++++++.+|++ +++|||++.++....+.+++.+.
T Consensus 81 ~q~~-----------~~~~-~tv~~~i~~~LS~G~~qrv~laral~~~p~~--lllDEP~~~LD~~~~~~l~~~l~ 142 (178)
T cd03247 81 NQRP-----------YLFD-TTLRNNLGRRFSGGERQRLALARILLQDAPI--VLLDEPTVGLDPITERQLLSLIF 142 (178)
T ss_pred ccCC-----------eeec-ccHHHhhcccCCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHHHH
Confidence 2111 0110 01111 155688888888 899999999998 99999999999988777666554
No 50
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.9e-17 Score=144.56 Aligned_cols=138 Identities=21% Similarity=0.235 Sum_probs=100.3
Q ss_pred EEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe---eccc--ccccCCCCCcccH-
Q 023675 83 LWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---NCRH--GLNRDLSFKAEDR- 156 (279)
Q Consensus 83 ~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd---~i~~--~~~~~~~~~~~~~- 156 (279)
+.....+.+.++.++.++.|+.++|.||||||||||+++|+|+. .|+.|.|.++|+ |..+ .....+||.+++.
T Consensus 9 ~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YA 87 (345)
T COG1118 9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-TPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYA 87 (345)
T ss_pred hhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-CCCCceEEECCEeccchhccchhhcceeEEEechh
Confidence 33444566666789999999999999999999999999999999 999999999999 4432 0111233333221
Q ss_pred ------------------------HHHHHHHHHHHHHHHhCCcch-hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675 157 ------------------------VENIRRIGEVAKLFADAGVIC-IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (279)
Q Consensus 157 ------------------------~~~~~~v~~~~~~~~~~~~~~-i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~ 210 (279)
.+...++.++..+.+-.++.. ....+++++++| ++||+++.+|++ ++||||+
T Consensus 88 LF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~v--LLLDEPf 165 (345)
T COG1118 88 LFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKV--LLLDEPF 165 (345)
T ss_pred hcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCe--EeecCCc
Confidence 122334444444443333322 456789999999 999999999988 9999999
Q ss_pred cchhccChhhHHH
Q 023675 211 QVCEARDPKGLYK 223 (279)
Q Consensus 211 ~~l~~R~~~~l~~ 223 (279)
..++....+.+-+
T Consensus 166 ~ALDa~vr~~lr~ 178 (345)
T COG1118 166 GALDAKVRKELRR 178 (345)
T ss_pred hhhhHHHHHHHHH
Confidence 9999988776443
No 51
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.72 E-value=7.4e-18 Score=168.60 Aligned_cols=146 Identities=21% Similarity=0.196 Sum_probs=104.0
Q ss_pred CCCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675 79 STNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD 148 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~ 148 (279)
.+.|++++++|+|+. +.||++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++.+. ++..
T Consensus 471 ~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I~idg~~i~~~~~~~lr~~ 549 (708)
T TIGR01193 471 NGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEILLNGFSLKDIDRHTLRQF 549 (708)
T ss_pred CCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEEEECCEEHHHcCHHHHHHh
Confidence 457999999999964 229999999999999999999999999999999 89999999999887421 1111
Q ss_pred CCCCccc--------------------HHHHHHHHHHHH---HHHHh--CCc----chhcccCChHHHHH-HHHHHhCCC
Q 023675 149 LSFKAED--------------------RVENIRRIGEVA---KLFAD--AGV----ICIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 149 ~~~~~~~--------------------~~~~~~~v~~~~---~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
+++.+++ ..+.+....+.+ ..... .|+ ...+..+|+|++|| .++|+++++
T Consensus 550 i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~ 629 (708)
T TIGR01193 550 INYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTD 629 (708)
T ss_pred eEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhC
Confidence 2221111 001111111111 11111 122 12345689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
|++ ++||||++.++....+.+++.+..
T Consensus 630 p~i--liLDE~Ts~LD~~te~~i~~~L~~ 656 (708)
T TIGR01193 630 SKV--LILDESTSNLDTITEKKIVNNLLN 656 (708)
T ss_pred CCE--EEEeCccccCCHHHHHHHHHHHHH
Confidence 998 999999999999888777766553
No 52
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.72 E-value=7.8e-18 Score=165.09 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=100.1
Q ss_pred CCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 80 TNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
..|+++|++|.|.+ +.||++++|+.++|+|+||||||||+++|+|++ |.+|.|++||.++.+. ++..+
T Consensus 348 ~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~I~i~g~~i~~~~~~~lr~~i 425 (588)
T PRK11174 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHL 425 (588)
T ss_pred ceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcEEEECCEecccCCHHHHHhhe
Confidence 46999999876643 238999999999999999999999999999998 5699999999887531 11111
Q ss_pred CCCccc-------------------HHHHHHHHHHHHH---HHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCCC
Q 023675 150 SFKAED-------------------RVENIRRIGEVAK---LFAD--AGVI----CIACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 150 ~~~~~~-------------------~~~~~~~v~~~~~---~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
++.+++ ..+.+....+.+. .... .|.. ..+..+|+|++|| .+||+++++|+
T Consensus 426 ~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~ 505 (588)
T PRK11174 426 SWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQ 505 (588)
T ss_pred EEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 111110 0111111111111 1111 1222 2345689999999 99999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ ++||||++.++....+.+.+.+.
T Consensus 506 I--liLDE~TSaLD~~te~~i~~~l~ 529 (588)
T PRK11174 506 L--LLLDEPTASLDAHSEQLVMQALN 529 (588)
T ss_pred E--EEEeCCccCCCHHHHHHHHHHHH
Confidence 8 99999999999998877665543
No 53
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.72 E-value=8.4e-18 Score=165.02 Aligned_cols=144 Identities=19% Similarity=0.151 Sum_probs=102.4
Q ss_pred CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
+.+++++++|+|+++ .+|++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++.+. +...+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~idg~~i~~~~~~~l~~~i 417 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEIRLDGRPLSSLSHSVLRQGV 417 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceEEECCEEhhhCCHHHHHhhe
Confidence 569999999999642 28999999999999999999999999999999 89999999999987531 11112
Q ss_pred CCCccc-------HHH-----------HHHHHHHHH---HHHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675 150 SFKAED-------RVE-----------NIRRIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 150 ~~~~~~-------~~~-----------~~~~v~~~~---~~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
++.+++ .+. .+....+.+ .... ..|+. ..+..+|+|++|| .++|++++++++
T Consensus 418 ~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~i 497 (592)
T PRK10790 418 AMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQI 497 (592)
T ss_pred EEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 221111 111 111111100 1111 11221 2345689999999 999999999988
Q ss_pred cEEEEeCCccchhccChhhHHHHHh
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++|||++.++....+.+.+.++
T Consensus 498 --lllDEpts~LD~~t~~~i~~~l~ 520 (592)
T PRK10790 498 --LILDEATANIDSGTEQAIQQALA 520 (592)
T ss_pred --EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999988777665543
No 54
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.71 E-value=1.2e-16 Score=134.21 Aligned_cols=136 Identities=22% Similarity=0.156 Sum_probs=92.5
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-----ccEEEEcCeecccc------
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG------ 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-----~G~i~ldgd~i~~~------ 144 (279)
.++.+++.+-|.+ +.++.++++++++|+|||||||||++++|.++. +.. .|.|.++|.++...
T Consensus 7 ~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn-dl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN-DLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred eeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc-ccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 4566677776764 459999999999999999999999999999987 444 49999999998643
Q ss_pred cccCCCCCccc-------------------------HHHHHHHHHHHHHHHHh--CCcchhcccCChHHHHH-HHHHHhC
Q 023675 145 LNRDLSFKAED-------------------------RVENIRRIGEVAKLFAD--AGVICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 145 ~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~--~~~~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
++..+++.++. ..+....-..-+.++.+ ..+......+|++++|| -+||+++
T Consensus 86 lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalA 165 (253)
T COG1117 86 LRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALA 165 (253)
T ss_pred HHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHh
Confidence 12222222210 00101111111222211 11222345689999999 8999999
Q ss_pred CCCCccEEEEeCCccchhccChh
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
-+|++ +++|||++.|++-...
T Consensus 166 v~PeV--lLmDEPtSALDPIsT~ 186 (253)
T COG1117 166 VKPEV--LLMDEPTSALDPISTL 186 (253)
T ss_pred cCCcE--EEecCcccccCchhHH
Confidence 99988 9999999999886543
No 55
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=5.4e-17 Score=141.38 Aligned_cols=140 Identities=20% Similarity=0.186 Sum_probs=96.0
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCC
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLS 150 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~ 150 (279)
+++++++.|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....++
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 2 ELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL-RPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred eEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccChhhHHHHhcceE
Confidence 45666666643 449999999999999999999999999999999 89999999999876321 111122
Q ss_pred CCccc--------HHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 151 FKAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 151 ~~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
|.++. ..+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ +
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~l--l 158 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPEL--L 158 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 22211 1111100 001122233333322 334588899998 999999999998 9
Q ss_pred EEeCCccchhccChhhHHHHH
Q 023675 205 FMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+||||+..++......+++.+
T Consensus 159 llDEPt~~LD~~~~~~l~~~l 179 (235)
T cd03261 159 LYDEPTAGLDPIASGVIDDLI 179 (235)
T ss_pred EecCCcccCCHHHHHHHHHHH
Confidence 999999999998877655543
No 56
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.71 E-value=9.5e-17 Score=138.06 Aligned_cols=142 Identities=17% Similarity=0.231 Sum_probs=97.9
Q ss_pred eEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------ccc
Q 023675 82 ILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNR 147 (279)
Q Consensus 82 i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~ 147 (279)
+++++++++|.. +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ...
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-KPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEehhhcChhHHHHHHH
Confidence 456777777743 238999999999999999999999999999999 89999999999876321 111
Q ss_pred CCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 148 DLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 148 ~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
.++|.+++ ..+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l- 159 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPL- 159 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 12221111 1111110 011222233333322 334588899998 999999999998
Q ss_pred EEEEeCCccchhccChhhHHHHHh
Q 023675 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++|||++.++....+.+.+.+.
T Consensus 160 -lllDEPt~~LD~~~~~~l~~~l~ 182 (216)
T TIGR00960 160 -LLADEPTGNLDPELSRDIMRLFE 182 (216)
T ss_pred -EEEeCCCCcCCHHHHHHHHHHHH
Confidence 99999999999988777655443
No 57
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.1e-17 Score=156.31 Aligned_cols=139 Identities=20% Similarity=0.210 Sum_probs=97.2
Q ss_pred eEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc----ccCCCC
Q 023675 82 ILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~----~~~~~~ 151 (279)
+..++++|.|+++. +|++++|+.++|+|+||||||||+++|+|++ .|+.|+|.+||.++++-- +..+.+
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCccccccCHHHHHhHeee
Confidence 44459999998752 8999999999999999999999999999999 899999999998875211 111111
Q ss_pred Ccc-------cHH------------HHHHHHHH---HHHHHHh-CCcc----hhcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 152 KAE-------DRV------------ENIRRIGE---VAKLFAD-AGVI----CIACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 152 ~~~-------~~~------------~~~~~v~~---~~~~~~~-~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
..+ ..+ +.+....+ +...... .|+. ..+..+|+++++| ..+|+++.++++
T Consensus 400 v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l-- 477 (559)
T COG4988 400 VSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL-- 477 (559)
T ss_pred eCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE--
Confidence 111 011 11111111 1111211 1222 2345689999999 999999999888
Q ss_pred EEEeCCccchhccChhhHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~ 223 (279)
+++|||++.++.+..+.+.+
T Consensus 478 ~llDEpTA~LD~etE~~i~~ 497 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQ 497 (559)
T ss_pred EEecCCccCCCHhHHHHHHH
Confidence 99999999999887665443
No 58
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.71 E-value=1.3e-17 Score=176.73 Aligned_cols=145 Identities=19% Similarity=0.147 Sum_probs=103.5
Q ss_pred CCCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccC---------------------
Q 023675 79 STNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--------------------- 129 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~--------------------- 129 (279)
.+.|+|++++|+|+.+ .||++++|++++|||+||||||||+++|+|+| +|
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~y-dp~~~~~~~~~~~~~~~~~~~~~ 1241 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFY-DLKNDHHIVFKNEHTNDMTNEQD 1241 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhC-CCccccccccccccccccccccc
Confidence 3579999999999643 28999999999999999999999999999999 66
Q ss_pred ---------------------------------CccEEEEcCeecccc----cccCCCCCcccH----------------
Q 023675 130 ---------------------------------GKLTYILDGDNCRHG----LNRDLSFKAEDR---------------- 156 (279)
Q Consensus 130 ---------------------------------~~G~i~ldgd~i~~~----~~~~~~~~~~~~---------------- 156 (279)
.+|.|++||.++++. ++..+++.+++.
T Consensus 1242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1242 YQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKE 1321 (1466)
T ss_pred cccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCC
Confidence 699999999998531 222233222211
Q ss_pred ---HHHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 157 ---VENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 157 ---~~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
.+.+....+.+. ... ..|+. ..+..+|+||+|| .+||+++++|++ ++|||+++.|+....+.+.+
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~I--LLLDEaTSaLD~~sE~~I~~ 1399 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKI--LLLDEATSSLDSNSEKLIEK 1399 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccCHHHHHHHHH
Confidence 111111111111 111 11222 2345689999999 999999999998 99999999999987776665
Q ss_pred HHh
Q 023675 224 LAR 226 (279)
Q Consensus 224 ~~~ 226 (279)
.+.
T Consensus 1400 ~L~ 1402 (1466)
T PTZ00265 1400 TIV 1402 (1466)
T ss_pred HHH
Confidence 443
No 59
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.71 E-value=1.5e-17 Score=161.09 Aligned_cols=144 Identities=21% Similarity=0.219 Sum_probs=102.8
Q ss_pred CCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675 80 TNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD 148 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~ 148 (279)
+.|++++++|+|+++ .|+++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++++. ++..
T Consensus 319 ~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~I~~~g~~i~~~~~~~lr~~ 397 (529)
T TIGR02857 319 PSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPTEGSIAVNGVPLADADADSWRDQ 397 (529)
T ss_pred CeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEehhhCCHHHHHhh
Confidence 469999999999752 28999999999999999999999999999999 89999999999987531 1111
Q ss_pred CCCCccc-------HHHH------------HHHHHH---HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 149 LSFKAED-------RVEN------------IRRIGE---VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 149 ~~~~~~~-------~~~~------------~~~v~~---~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
+++.+++ .+++ +....+ +...... .|+. ..+..+++|++|| .++|+++++|
T Consensus 398 i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~ 477 (529)
T TIGR02857 398 IAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDA 477 (529)
T ss_pred eEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCC
Confidence 1111111 1111 111111 1111111 1221 2344689999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ +++|||++.++....+.+++.+.
T Consensus 478 ~i--lilDE~ts~lD~~~~~~i~~~l~ 502 (529)
T TIGR02857 478 PL--LLLDEPTAHLDAETEALVTEALR 502 (529)
T ss_pred CE--EEEeCcccccCHHHHHHHHHHHH
Confidence 98 99999999999998888776555
No 60
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=9.8e-17 Score=137.67 Aligned_cols=141 Identities=21% Similarity=0.220 Sum_probs=96.4
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCccc
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED 155 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~~ 155 (279)
+++++++.|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....++|.+++
T Consensus 2 ~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 2 ELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred eeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 45566666643 449999999999999999999999999999999 89999999999876421 11112222211
Q ss_pred H--------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675 156 R--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (279)
Q Consensus 156 ~--------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~ 210 (279)
. .+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ +++|||+
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~--lllDEPt 158 (213)
T cd03259 81 YALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSL--LLLDEPL 158 (213)
T ss_pred hhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence 1 111100 011122233333322 234588899998 899999999998 9999999
Q ss_pred cchhccChhhHHHHHh
Q 023675 211 QVCEARDPKGLYKLAR 226 (279)
Q Consensus 211 ~~l~~R~~~~l~~~~~ 226 (279)
..++....+.+++.+.
T Consensus 159 ~~LD~~~~~~l~~~l~ 174 (213)
T cd03259 159 SALDAKLREELREELK 174 (213)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999988777665443
No 61
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.71 E-value=1.8e-17 Score=162.23 Aligned_cols=145 Identities=19% Similarity=0.288 Sum_probs=102.3
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.+++++++|+|+++ .++++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++.+. +..
T Consensus 339 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I~i~g~~i~~~~~~~~~~ 417 (582)
T PRK11176 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEILLDGHDLRDYTLASLRN 417 (582)
T ss_pred CCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceEEECCEEhhhcCHHHHHh
Confidence 3469999999999642 28999999999999999999999999999999 89999999999887421 111
Q ss_pred CCCCCccc-------HH-------------HHHHHHHHHH---HHHH--hCCcc----hhcccCChHHHHH-HHHHHhCC
Q 023675 148 DLSFKAED-------RV-------------ENIRRIGEVA---KLFA--DAGVI----CIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 148 ~~~~~~~~-------~~-------------~~~~~v~~~~---~~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
.++|.+++ .+ +.+....+.+ .... ..|+. ..+..+|+|++|| .++|++++
T Consensus 418 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~ 497 (582)
T PRK11176 418 QVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_pred hceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHh
Confidence 11111111 00 1111111111 1111 11222 2334589999999 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|++ +++|||++.++....+.+++.+.
T Consensus 498 ~~~i--lilDEptsaLD~~t~~~i~~~l~ 524 (582)
T PRK11176 498 DSPI--LILDEATSALDTESERAIQAALD 524 (582)
T ss_pred CCCE--EEEECccccCCHHHHHHHHHHHH
Confidence 9998 99999999999988877665544
No 62
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.71 E-value=6.5e-17 Score=148.31 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=99.3
Q ss_pred eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675 82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L 145 (279)
Q Consensus 82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~ 145 (279)
|++++++++|. ++.||++++|++++|+|+||||||||+++|++++ .|++|.|+++|.++... .
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHHH
Confidence 56677777774 2338999999999999999999999999999999 89999999999987421 1
Q ss_pred ccCCCCCcccH--------HHHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCC
Q 023675 146 NRDLSFKAEDR--------VENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 146 ~~~~~~~~~~~--------~~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
...+++.+++. .+.+.. ...+..++...++. .....+|+++++| .++|+++.+|+
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~ 160 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 22233322211 111110 01122223333332 2345689999999 99999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHH
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+ +++|||++.++......+++.+
T Consensus 161 i--LLlDEPts~LD~~t~~~i~~lL 183 (343)
T TIGR02314 161 V--LLCDEATSALDPATTQSILELL 183 (343)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHH
Confidence 8 9999999999999887755433
No 63
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.70 E-value=1.1e-16 Score=138.11 Aligned_cols=141 Identities=17% Similarity=0.210 Sum_probs=94.5
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK 152 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~ 152 (279)
++++++++|.. ..||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....++|.
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-PPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred EEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 45555555543 448999999999999999999999999999999 89999999999876321 11112222
Q ss_pred ccc--------HHHHHH-------------HHHHHHHHHH--hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 153 AED--------RVENIR-------------RIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 153 ~~~--------~~~~~~-------------~v~~~~~~~~--~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
++. ..+.+. .+......+. .......+..+|+++++| .++++++.+|++ +++||
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDE 158 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKL--LLLDE 158 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCE--EEECC
Confidence 111 111110 1111111111 111112344578888888 899999999998 99999
Q ss_pred CccchhccChhhHHHHHh
Q 023675 209 PLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~~~ 226 (279)
|+..++....+.+++.+.
T Consensus 159 Pt~~LD~~~~~~l~~~l~ 176 (222)
T cd03224 159 PSEGLAPKIVEEIFEAIR 176 (222)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999988777665443
No 64
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=7.1e-17 Score=138.23 Aligned_cols=141 Identities=11% Similarity=0.152 Sum_probs=95.1
Q ss_pred EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc---
Q 023675 83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE--- 154 (279)
Q Consensus 83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~--- 154 (279)
+++++++.|. ++.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++.......++|.++
T Consensus 2 ~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 2 EVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred EEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 4556666664 3449999999999999999999999999999999 899999999998763211111111111
Q ss_pred -----cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 155 -----DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 155 -----~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
...+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++ +++|||+..
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~--lllDEP~~~ 158 (210)
T cd03269 81 LYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPEL--LILDEPFSG 158 (210)
T ss_pred CCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcC
Confidence 11111110 011122223333322 234588899888 899999999998 999999999
Q ss_pred hhccChhhHHHHHh
Q 023675 213 CEARDPKGLYKLAR 226 (279)
Q Consensus 213 l~~R~~~~l~~~~~ 226 (279)
++....+.+++.+.
T Consensus 159 LD~~~~~~~~~~l~ 172 (210)
T cd03269 159 LDPVNVELLKDVIR 172 (210)
T ss_pred CCHHHHHHHHHHHH
Confidence 99887776555443
No 65
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.70 E-value=8.7e-17 Score=138.43 Aligned_cols=141 Identities=22% Similarity=0.221 Sum_probs=95.9
Q ss_pred EEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------c
Q 023675 83 LWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------L 145 (279)
Q Consensus 83 ~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~ 145 (279)
++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... .
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 2 ELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred eEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-CCCceeEEECCEehhhcchhHHHHHH
Confidence 45566666643 238999999999999999999999999999999 89999999999876321 0
Q ss_pred ccCCCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675 146 NRDLSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 146 ~~~~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
...++|.++ ...+.+.. ...+...+...++.. .+..+|+++++| .++++++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPK 160 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCC
Confidence 111221111 11111110 011222233333322 234578899988 99999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ ++||||++.++......+++.+.
T Consensus 161 l--llLDEP~~~LD~~~~~~l~~~l~ 184 (218)
T cd03255 161 I--ILADEPTGNLDSETGKEVMELLR 184 (218)
T ss_pred E--EEEcCCcccCCHHHHHHHHHHHH
Confidence 8 99999999999988776655433
No 66
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=8.3e-17 Score=148.17 Aligned_cols=142 Identities=17% Similarity=0.205 Sum_probs=99.2
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~ 153 (279)
.+++++++++|.+ +.||++++|++++|+||||||||||+++|+|++ .|++|.|++||.++.... ...+++.+
T Consensus 6 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vf 84 (351)
T PRK11432 6 FVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQIFIDGEDVTHRSIQQRDICMVF 84 (351)
T ss_pred EEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 4677777777753 459999999999999999999999999999999 899999999998874210 01112111
Q ss_pred cc--------HHHHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 154 ED--------RVENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
++ ..+.+.. ...+...+...++. .....+|+++++| +++|+++.+|++ ++|||
T Consensus 85 Q~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~l--LLLDE 162 (351)
T PRK11432 85 QSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKV--LLFDE 162 (351)
T ss_pred CCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcC
Confidence 11 1111110 01111122222322 2345688999999 999999999998 99999
Q ss_pred CccchhccChhhHHHHH
Q 023675 209 PLQVCEARDPKGLYKLA 225 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~~ 225 (279)
|+..++......+.+.+
T Consensus 163 P~s~LD~~~r~~l~~~l 179 (351)
T PRK11432 163 PLSNLDANLRRSMREKI 179 (351)
T ss_pred CcccCCHHHHHHHHHHH
Confidence 99999999887755443
No 67
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.70 E-value=2e-16 Score=135.72 Aligned_cols=142 Identities=22% Similarity=0.268 Sum_probs=97.6
Q ss_pred eEEeecceeec------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccC
Q 023675 82 ILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRD 148 (279)
Q Consensus 82 i~~~~~~~~~~------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~ 148 (279)
++++++++.|. .+.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL-TPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 45666766663 2348999999999999999999999999999999 89999999999876421 1112
Q ss_pred CCCCcccH--------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 149 LSFKAEDR--------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 149 ~~~~~~~~--------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
++|.+++. .+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-- 158 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL-- 158 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCE--
Confidence 22222211 111110 011122222333322 234588899888 999999999998
Q ss_pred EEEeCCccchhccChhhHHHHHh
Q 023675 204 VFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++||||+..++......+++.+.
T Consensus 159 llLDEPt~~LD~~~~~~l~~~l~ 181 (214)
T TIGR02673 159 LLADEPTGNLDPDLSERILDLLK 181 (214)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999988777665443
No 68
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=1.1e-16 Score=147.55 Aligned_cols=141 Identities=18% Similarity=0.107 Sum_probs=98.7
Q ss_pred eEEeecceee-cC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675 82 ILWHKNSVDK-RD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA 153 (279)
Q Consensus 82 i~~~~~~~~~-~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~ 153 (279)
++++++++.| .. +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++.... ...++|.+
T Consensus 4 l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 4 LKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-RITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 5677777777 32 459999999999999999999999999999999 899999999998874210 11122222
Q ss_pred cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
++ ..+.+.. ...+..++...++.. ....+|+++++| .++|+++.+|++ ++|||
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~l--lLLDE 160 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAV--FLFDE 160 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence 11 1111110 011122222333322 344689999999 999999999998 99999
Q ss_pred CccchhccChhhHHHHH
Q 023675 209 PLQVCEARDPKGLYKLA 225 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~~ 225 (279)
|++.++......+.+.+
T Consensus 161 P~s~LD~~~r~~l~~~l 177 (356)
T PRK11650 161 PLSNLDAKLRVQMRLEI 177 (356)
T ss_pred CcccCCHHHHHHHHHHH
Confidence 99999998877655433
No 69
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.70 E-value=9.9e-17 Score=147.82 Aligned_cols=141 Identities=21% Similarity=0.201 Sum_probs=98.8
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCcc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE 154 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~~ 154 (279)
+++++++++|.+ +.+|++.+|++++|+||||||||||+++|+|++ .|++|.|.+||.++.... ...++|.++
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 5 LSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 667777777754 448999999999999999999999999999999 899999999998874210 111222221
Q ss_pred c--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675 155 D--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (279)
Q Consensus 155 ~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p 209 (279)
+ ..+++.. ...+..++...++.. ....+|+++++| .++|+++.+|++ ++||||
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~l--lLLDEP 161 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGL--LLLDEP 161 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence 1 1111110 011222222233322 344688999999 999999999998 999999
Q ss_pred ccchhccChhhHHHHH
Q 023675 210 LQVCEARDPKGLYKLA 225 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~~ 225 (279)
+..++......+.+.+
T Consensus 162 ~s~LD~~~r~~l~~~L 177 (353)
T TIGR03265 162 LSALDARVREHLRTEI 177 (353)
T ss_pred cccCCHHHHHHHHHHH
Confidence 9999988877655433
No 70
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.70 E-value=6.7e-17 Score=158.08 Aligned_cols=145 Identities=21% Similarity=0.264 Sum_probs=102.7
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.+++++++|+|+++ .||++++|++++|+|+||||||||+++|+|++ +|.+|.|++||.++++. ++.
T Consensus 336 ~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~I~i~g~~i~~~~~~~~r~ 414 (574)
T PRK11160 336 QVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGEILLNGQPIADYSEAALRQ 414 (574)
T ss_pred CCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEhhhCCHHHHHh
Confidence 3569999999999642 28999999999999999999999999999999 89999999999987531 111
Q ss_pred CCCCCccc-------HHHHHH---------HHHHHHHH------HH-hCCcch----hcccCChHHHHH-HHHHHhCCCC
Q 023675 148 DLSFKAED-------RVENIR---------RIGEVAKL------FA-DAGVIC----IACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 148 ~~~~~~~~-------~~~~~~---------~v~~~~~~------~~-~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
.+++.+++ .++++. .+.+.... .. ..|+.. .+..+|+++++| .++|+++++|
T Consensus 415 ~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~ 494 (574)
T PRK11160 415 AISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDA 494 (574)
T ss_pred heeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 12222211 111110 11111110 00 112211 344589999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ +++|||++.++....+.+.+.+.
T Consensus 495 ~i--lilDE~ts~lD~~t~~~i~~~l~ 519 (574)
T PRK11160 495 PL--LLLDEPTEGLDAETERQILELLA 519 (574)
T ss_pred CE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 98 99999999999988877666544
No 71
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.2e-16 Score=137.79 Aligned_cols=140 Identities=18% Similarity=0.187 Sum_probs=96.0
Q ss_pred EEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc
Q 023675 83 LWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (279)
Q Consensus 83 ~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~ 153 (279)
+++++++.|.. +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ...++|.+
T Consensus 2 ~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~-~~~i~~v~ 79 (220)
T cd03293 2 EVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-RPTSGEVLVDGEPVTGP-GPDRGYVF 79 (220)
T ss_pred eEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECccc-cCcEEEEe
Confidence 34555555643 348999999999999999999999999999999 89999999999876321 11111111
Q ss_pred c--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 154 E--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 154 ~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
+ ...+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++ ++|||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~l--llLDE 157 (220)
T cd03293 80 QQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDV--LLLDE 157 (220)
T ss_pred cccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEECC
Confidence 1 11111110 011222233333322 234588899888 999999999998 99999
Q ss_pred CccchhccChhhHHHHHh
Q 023675 209 PLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~~~ 226 (279)
|++.++....+.+++.++
T Consensus 158 Pt~~LD~~~~~~~~~~l~ 175 (220)
T cd03293 158 PFSALDALTREQLQEELL 175 (220)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999988877665443
No 72
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.70 E-value=8.6e-17 Score=130.02 Aligned_cols=107 Identities=18% Similarity=0.160 Sum_probs=86.2
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV 157 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~ 157 (279)
+++++++.|.. ..+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|... ++|.++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~~~~~~~-------i~~~~~--- 70 (144)
T cd03221 2 ELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVTWGSTVK-------IGYFEQ--- 70 (144)
T ss_pred EEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCeEE-------EEEEcc---
Confidence 34555555543 348999999999999999999999999999999 89999999998521 122221
Q ss_pred HHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 158 ~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++++++| .++++++.+|++ +++|||+..++......+.+.++
T Consensus 71 ------------------------lS~G~~~rv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~ 114 (144)
T cd03221 71 ------------------------LSGGEKMRLALAKLLLENPNL--LLLDEPTNHLDLESIEALEEALK 114 (144)
T ss_pred ------------------------CCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence 67788887 899999999998 99999999999988777766555
No 73
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.70 E-value=1.3e-16 Score=137.57 Aligned_cols=141 Identities=18% Similarity=0.198 Sum_probs=95.9
Q ss_pred EEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675 83 LWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK 152 (279)
Q Consensus 83 ~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~ 152 (279)
+++++++.|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|.
T Consensus 2 ~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 2 QIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred EEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccchHHHhhhEEEe
Confidence 45566666643 348999999999999999999999999999999 89999999999876321 11111111
Q ss_pred cc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 153 AE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
++ ...+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ +++|
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllD 158 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSV--LLLD 158 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEEC
Confidence 11 11111100 011122233333322 234588889888 999999999998 9999
Q ss_pred CCccchhccChhhHHHHHh
Q 023675 208 VPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~~~~~ 226 (279)
||+..++....+.+++.+.
T Consensus 159 EP~~~LD~~~~~~l~~~l~ 177 (220)
T cd03263 159 EPTSGLDPASRRAIWDLIL 177 (220)
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 9999999988777665443
No 74
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.70 E-value=2.2e-17 Score=138.49 Aligned_cols=133 Identities=21% Similarity=0.267 Sum_probs=94.3
Q ss_pred eEEeecceee-cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCccc
Q 023675 82 ILWHKNSVDK-RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAED 155 (279)
Q Consensus 82 i~~~~~~~~~-~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~ 155 (279)
+++++++++| .+..+|++++|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++... ....++|.+++
T Consensus 5 l~~~~l~~~~~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~ 83 (182)
T cd03215 5 LEVRGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITLDGKPVTRRSPRDAIRAGIAYVPED 83 (182)
T ss_pred EEEeccEEEeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccCHHHHHhCCeEEecCC
Confidence 5667776665 34569999999999999999999999999999999 89999999999887421 11123333322
Q ss_pred HH--HHHH--HHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 156 RV--ENIR--RIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 156 ~~--~~~~--~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.. ..+. .+.+.... ...+++++++| .++++++.+|++ +++|||+..++....+.+.+.+.
T Consensus 84 ~~~~~~~~~~t~~e~l~~---------~~~LS~G~~qrl~la~al~~~p~l--lllDEP~~~LD~~~~~~l~~~l~ 148 (182)
T cd03215 84 RKREGLVLDLSVAENIAL---------SSLLSGGNQQKVVLARWLARDPRV--LILDEPTRGVDVGAKAEIYRLIR 148 (182)
T ss_pred cccCcccCCCcHHHHHHH---------HhhcCHHHHHHHHHHHHHccCCCE--EEECCCCcCCCHHHHHHHHHHHH
Confidence 10 0000 01110000 00178888888 899999999998 99999999999988777655443
No 75
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.69 E-value=2e-16 Score=138.33 Aligned_cols=140 Identities=19% Similarity=0.235 Sum_probs=95.4
Q ss_pred eEEeecceeec-C-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccC
Q 023675 82 ILWHKNSVDKR-D-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRD 148 (279)
Q Consensus 82 i~~~~~~~~~~-~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~ 148 (279)
+++++++++|. + +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 45667777765 3 349999999999999999999999999999999 89999999999876321 1111
Q ss_pred CCCCccc--------HHHHHH--------------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHh
Q 023675 149 LSFKAED--------RVENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSM 195 (279)
Q Consensus 149 ~~~~~~~--------~~~~~~--------------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l 195 (279)
++|.++. ..+.+. ....+..++...++.. .+..+|+++++| .+++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 1111110 001000 0011122222233322 344588899988 999999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+.+|++ +++|||++.++....+.+++.
T Consensus 161 ~~~p~l--lllDEPt~~LD~~~~~~l~~~ 187 (243)
T TIGR02315 161 AQQPDL--ILADEPIASLDPKTSKQVMDY 187 (243)
T ss_pred hcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence 999998 999999999998877665543
No 76
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.69 E-value=1.4e-16 Score=137.14 Aligned_cols=142 Identities=19% Similarity=0.194 Sum_probs=97.0
Q ss_pred eEEeecceeecCC---------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCC
Q 023675 82 ILWHKNSVDKRDR---------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDL 149 (279)
Q Consensus 82 i~~~~~~~~~~~~---------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~ 149 (279)
++++++++.|..+ .+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEEcccCHHHHHhhE
Confidence 4566666666543 38999999999999999999999999999999 89999999999876421 11111
Q ss_pred CCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 150 SFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 150 ~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
++.++ ...+.+.. ...+...+...++.. .+..+|+++++| .++++++.+|++ +
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~i--l 158 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPV--L 158 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCE--E
Confidence 11111 11111110 011122233333322 344588889888 899999999998 9
Q ss_pred EEeCCccchhccChhhHHHHHh
Q 023675 205 FMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++|||+..++....+.+++.+.
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~ 180 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIR 180 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHH
Confidence 9999999999988777655443
No 77
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.6e-16 Score=142.71 Aligned_cols=141 Identities=18% Similarity=0.170 Sum_probs=98.9
Q ss_pred eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------c
Q 023675 82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------L 145 (279)
Q Consensus 82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~ 145 (279)
+++++++++|.. +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... +
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEEEECCEECCCcCccHHHH
Confidence 567777777753 238999999999999999999999999999999 89999999999887431 1
Q ss_pred ccCCCCCcccH---------HHHHHH-----------H-HHHHHHHHhCCcc------hhcccCChHHHHH-HHHHHhCC
Q 023675 146 NRDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVI------CIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 146 ~~~~~~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~------~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
...++|.+++. .+.+.. . ..+..++...++. .....+|+++++| .++++++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 12233322211 111110 0 1112233333442 1244588899998 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|++ +++|||+..++......+++.+
T Consensus 162 ~P~l--lllDEPt~gLD~~~~~~l~~~l 187 (287)
T PRK13637 162 EPKI--LILDEPTAGLDPKGRDEILNKI 187 (287)
T ss_pred CCCE--EEEECCccCCCHHHHHHHHHHH
Confidence 9998 9999999999998877655433
No 78
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.69 E-value=1.3e-16 Score=144.51 Aligned_cols=142 Identities=17% Similarity=0.129 Sum_probs=98.7
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK 152 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~ 152 (279)
.+++++++++|.+ +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++... ....++|.
T Consensus 7 ~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~-~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 7 PIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT-HPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred eEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEecccchHHHHhcEEEE
Confidence 4677777777754 449999999999999999999999999999999 89999999999887421 11112222
Q ss_pred ccc--------HHHHHHH---H---------HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 153 AED--------RVENIRR---I---------GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 153 ~~~--------~~~~~~~---v---------~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
+++ ..+.+.. . ..+..++...++. ..+..+|+++++| .++++++.+|++ ++||
T Consensus 86 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~l--llLD 163 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDV--LVLD 163 (306)
T ss_pred eccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCE--EEEe
Confidence 211 1111110 0 0111222222221 1344688888888 899999999998 9999
Q ss_pred CCccchhccChhhHHHHH
Q 023675 208 VPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~~~~ 225 (279)
||+..++....+.+++.+
T Consensus 164 EPt~gLD~~~~~~l~~~l 181 (306)
T PRK13537 164 EPTTGLDPQARHLMWERL 181 (306)
T ss_pred CCCcCCCHHHHHHHHHHH
Confidence 999999998877655443
No 79
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=2.7e-16 Score=137.35 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=95.4
Q ss_pred EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCC
Q 023675 83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDL 149 (279)
Q Consensus 83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~ 149 (279)
++++++++|.. +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....+
T Consensus 2 ~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred EEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 45566666643 348999999999999999999999999999999 89999999999876321 11112
Q ss_pred CCCcc--------cHHHHHH--------------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhC
Q 023675 150 SFKAE--------DRVENIR--------------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML 196 (279)
Q Consensus 150 ~~~~~--------~~~~~~~--------------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~ 196 (279)
+|.++ ...+.+. ....+..++...++.. .+..+|+++++| .++++++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~ 160 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALM 160 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHh
Confidence 22111 1111110 0011122233333322 234588899998 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ ++||||++.++......+++.+
T Consensus 161 ~~p~l--lllDEPt~~LD~~~~~~l~~~l 187 (241)
T cd03256 161 QQPKL--ILADEPVASLDPASSRQVMDLL 187 (241)
T ss_pred cCCCE--EEEeCccccCCHHHHHHHHHHH
Confidence 99998 9999999999998877655543
No 80
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.69 E-value=1.4e-16 Score=147.80 Aligned_cols=140 Identities=21% Similarity=0.261 Sum_probs=105.3
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcc-
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE- 154 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~- 154 (279)
+|...+..+.+.++.||++++|++.+|+|.||+|||||+++|.|+| .|++|+|++||+.++-. ....+++..+
T Consensus 9 ~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQH 87 (501)
T COG3845 9 GITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQH 87 (501)
T ss_pred ccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcceEEECCEEeccCCHHHHHHcCCcEEeec
Confidence 4666667888888999999999999999999999999999999999 99999999999988421 1112221111
Q ss_pred -------------------------cHHHHHHHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 155 -------------------------DRVENIRRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 155 -------------------------~~~~~~~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
+++...+++.++ ....|+. ..+..++.+++|| ++++++..++++ +
T Consensus 88 F~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l---~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~i--L 162 (501)
T COG3845 88 FMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKEL---SERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARL--L 162 (501)
T ss_pred cccccccchhhhhhhcCccccccccCHHHHHHHHHHH---HHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCE--E
Confidence 122222333333 3334443 3556678888888 999999999999 9
Q ss_pred EEeCCccchhccChhhHHHHHh
Q 023675 205 FMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+||||++.|.+...+.|+..++
T Consensus 163 ILDEPTaVLTP~E~~~lf~~l~ 184 (501)
T COG3845 163 ILDEPTAVLTPQEADELFEILR 184 (501)
T ss_pred EEcCCcccCCHHHHHHHHHHHH
Confidence 9999999999998888776543
No 81
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=2e-16 Score=142.36 Aligned_cols=140 Identities=17% Similarity=0.233 Sum_probs=97.3
Q ss_pred eEEeecceeec------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675 82 ILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK 152 (279)
Q Consensus 82 i~~~~~~~~~~------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~ 152 (279)
+++++++-.|. ++.||++++|++++|+||||||||||+++|++++ .|++|.|.++|.+.... ....++|.
T Consensus 5 i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~-~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLL-KPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 34455555554 4559999999999999999999999999999999 89999999999776431 12222332
Q ss_pred cc-----------cHHHHHHHHH---------HHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 153 AE-----------DRVENIRRIG---------EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 153 ~~-----------~~~~~~~~v~---------~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
++ +..+++..+. .+..++...++.. .+...|.++++| .++.+++.+|++ ++||
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~l--liLD 161 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPEL--LILD 161 (293)
T ss_pred ccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCE--EEEC
Confidence 22 1111111111 1222333334332 245578888888 999999999998 9999
Q ss_pred CCccchhccChhhHHHH
Q 023675 208 VPLQVCEARDPKGLYKL 224 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~~~ 224 (279)
||+..++......+.+.
T Consensus 162 EPt~GLDp~~~~~~~~~ 178 (293)
T COG1131 162 EPTSGLDPESRREIWEL 178 (293)
T ss_pred CCCcCCCHHHHHHHHHH
Confidence 99999999887765543
No 82
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=2.3e-16 Score=130.80 Aligned_cols=126 Identities=19% Similarity=0.243 Sum_probs=87.2
Q ss_pred ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc-cccccCCCCCcccHHHHH---------
Q 023675 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-HGLNRDLSFKAEDRVENI--------- 160 (279)
Q Consensus 91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~-~~~~~~~~~~~~~~~~~~--------- 160 (279)
...+.|+.+.+|+++++.||||||||||+|+++|+. .|..|+|.+|+..+. .+-...+-|..+.+..|+
T Consensus 20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~-~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvafg 98 (259)
T COG4525 20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV-TPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAFG 98 (259)
T ss_pred hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc-CcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHHH
Confidence 334569999999999999999999999999999999 999999999999873 111111112222111111
Q ss_pred ------------HHHHHHHHHH--HhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 161 ------------RRIGEVAKLF--ADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 161 ------------~~v~~~~~~~--~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
....+...+. .+.. ...+..+|++++|| -++|+++.+|++ ++||||+..++.-....
T Consensus 99 L~l~Gi~k~~R~~~a~q~l~~VgL~~~~-~~~i~qLSGGmrQRvGiARALa~eP~~--LlLDEPfgAlDa~tRe~ 170 (259)
T COG4525 99 LQLRGIEKAQRREIAHQMLALVGLEGAE-HKYIWQLSGGMRQRVGIARALAVEPQL--LLLDEPFGALDALTREQ 170 (259)
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCccccc-ccceEeecchHHHHHHHHHHhhcCcce--EeecCchhhHHHHHHHH
Confidence 1111221111 1111 23456788899999 899999999999 99999999887655443
No 83
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.69 E-value=1.8e-16 Score=135.95 Aligned_cols=141 Identities=17% Similarity=0.205 Sum_probs=95.8
Q ss_pred EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCC
Q 023675 83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDL 149 (279)
Q Consensus 83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~ 149 (279)
+++++++.|.. +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....+
T Consensus 2 ~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 2 EFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred EEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 34556666642 348999999999999999999999999999999 89999999999876321 11112
Q ss_pred CCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 150 SFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 150 ~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
+|.+++ ..+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++ +
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l 158 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTI--L 158 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCE--E
Confidence 221111 1111110 011122233333322 234588889888 999999999998 9
Q ss_pred EEeCCccchhccChhhHHHHHh
Q 023675 205 FMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++|||++.++....+.+++.+.
T Consensus 159 llDEPt~~LD~~~~~~~~~~l~ 180 (214)
T cd03292 159 IADEPTGNLDPDTTWEIMNLLK 180 (214)
T ss_pred EEeCCCCcCCHHHHHHHHHHHH
Confidence 9999999999988777655443
No 84
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=1e-16 Score=129.96 Aligned_cols=118 Identities=21% Similarity=0.251 Sum_probs=89.9
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHH--
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLF-- 170 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 170 (279)
+..||.+++|+.++|+||||||||||+++++.+. .|++|.+++.|.++. .+.++..+..+.++.|...+|
T Consensus 20 ~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs-------~~~pea~Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 20 NNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVS-------TLKPEAYRQQVSYCAQTPALFGD 91 (223)
T ss_pred cceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCcccc-------ccChHHHHHHHHHHHcCcccccc
Confidence 4559999999999999999999999999999999 899999999999986 344444433333333222222
Q ss_pred --------------------------HhCCc-----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 171 --------------------------ADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 171 --------------------------~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
...++ ...+..+++++++| +++|.+...|++ ++|||+++.+++...
T Consensus 92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~I--LLLDE~TsALD~~nk 169 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKI--LLLDEITSALDESNK 169 (223)
T ss_pred chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCce--EEecCchhhcChhhH
Confidence 11111 12455688999999 889999999888 999999999998876
Q ss_pred hh
Q 023675 219 KG 220 (279)
Q Consensus 219 ~~ 220 (279)
+.
T Consensus 170 r~ 171 (223)
T COG4619 170 RN 171 (223)
T ss_pred HH
Confidence 55
No 85
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.69 E-value=1.9e-16 Score=135.21 Aligned_cols=130 Identities=20% Similarity=0.268 Sum_probs=90.4
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCCCCccc---------HHHHHHHH
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKAED---------RVENIRRI 163 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~~~~~~---------~~~~~~~v 163 (279)
+.+|++++|++++|+|+||||||||+++|+|++ .|++|.|.++|.++... ....++|.+++ ..+.+...
T Consensus 18 ~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~ 96 (205)
T cd03226 18 DLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVREELLLG 96 (205)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHHHHhhh
Confidence 448999999999999999999999999999999 89999999999876311 11112222221 11111100
Q ss_pred --------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 164 --------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 164 --------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
..+...+...++.. ....+|+++++| .++++++.+|++ ++||||+..++....+.+.+.++
T Consensus 97 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~~~~~l~~~l~ 170 (205)
T cd03226 97 LKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL--LIFDEPTSGLDYKNMERVGELIR 170 (205)
T ss_pred hhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 11222233333322 334578899998 899999999998 99999999999988776655443
No 86
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=1.7e-16 Score=140.14 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=89.2
Q ss_pred ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHH
Q 023675 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLF 170 (279)
Q Consensus 91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 170 (279)
-..+.||+++.|++.+|+|.||||||||.++|.++. .|++|.|+++|+++. .++..++++.++. .++..|
T Consensus 43 Gv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-ept~G~ilv~g~di~-------~~~~~~Lr~~Rr~--~~sMVF 112 (386)
T COG4175 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-EPTRGEILVDGKDIA-------KLSAAELRELRRK--KISMVF 112 (386)
T ss_pred eeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-CCCCceEEECCcchh-------cCCHHHHHHHHhh--hhhhhh
Confidence 345679999999999999999999999999999999 999999999999984 2222222222111 111111
Q ss_pred HhC-------------------------------------Ccc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 171 ADA-------------------------------------GVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 171 ~~~-------------------------------------~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
+.+ |+. .....+|++.+|| -+||+++.+|++ +++||
T Consensus 113 Q~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~I--lLMDE 190 (386)
T COG4175 113 QSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDI--LLMDE 190 (386)
T ss_pred hhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCE--EEecC
Confidence 111 111 1445688889999 899999999998 99999
Q ss_pred CccchhccChhhHH
Q 023675 209 PLQVCEARDPKGLY 222 (279)
Q Consensus 209 p~~~l~~R~~~~l~ 222 (279)
+++.|++-....+.
T Consensus 191 aFSALDPLIR~~mQ 204 (386)
T COG4175 191 AFSALDPLIRTEMQ 204 (386)
T ss_pred chhhcChHHHHHHH
Confidence 99999998776544
No 87
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=2e-16 Score=138.42 Aligned_cols=140 Identities=20% Similarity=0.247 Sum_probs=95.3
Q ss_pred EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675 83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK 152 (279)
Q Consensus 83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~ 152 (279)
++++++++|.. ..||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++... ....++|.
T Consensus 2 ~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 2 EFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred EEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 34566666643 348999999999999999999999999999999 89999999999876421 11112221
Q ss_pred cc--------cHHHHHHH------------HHHHHHHHHhCCcc------hhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 153 AE--------DRVENIRR------------IGEVAKLFADAGVI------CIACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~------~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
++ ...+.+.. ...+..++...++. ..+..+|+++++| .++++++.+|++ ++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--ll 158 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPL--LL 158 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 11 11111110 01122223333332 1234578889888 999999999998 99
Q ss_pred EeCCccchhccChhhHHHHH
Q 023675 206 MDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|||++.++......+.+.+
T Consensus 159 lDEPt~~LD~~~~~~l~~~L 178 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEF 178 (242)
T ss_pred ecCCcccCCHHHHHHHHHHH
Confidence 99999999988777655433
No 88
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.69 E-value=9.2e-17 Score=156.55 Aligned_cols=141 Identities=16% Similarity=0.156 Sum_probs=101.0
Q ss_pred CCeEEeecceeecCC----------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675 80 TNILWHKNSVDKRDR----------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L 145 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~----------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~ 145 (279)
+.++++|++|+|++. .||++++|++++|+|+||||||||+++|+|++ +|++|.|.+||.++++. +
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~i~~~g~~i~~~~~~~~ 414 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGEILLDGAAVSADSRDDY 414 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHH
Confidence 569999999999642 38999999999999999999999999999999 89999999999988531 1
Q ss_pred ccCCCCCcccHH-------HHH---HHHHHHHHHHHhCCcch----------hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 146 NRDLSFKAEDRV-------ENI---RRIGEVAKLFADAGVIC----------IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 146 ~~~~~~~~~~~~-------~~~---~~v~~~~~~~~~~~~~~----------i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
...+++.+++.. ... ....++...+...++.. ....+|+|+++| .++|+++.+|++ +
T Consensus 415 ~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~i--l 492 (555)
T TIGR01194 415 RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPI--L 492 (555)
T ss_pred HhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCE--E
Confidence 112222222110 000 00011111122222211 124588999999 999999999998 9
Q ss_pred EEeCCccchhccChhhHHH
Q 023675 205 FMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~ 223 (279)
++|||++.++....+.+++
T Consensus 493 ilDE~ts~LD~~~~~~i~~ 511 (555)
T TIGR01194 493 LFDEWAADQDPAFKRFFYE 511 (555)
T ss_pred EEeCCccCCCHHHHHHHHH
Confidence 9999999999998877654
No 89
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.69 E-value=4e-17 Score=160.12 Aligned_cols=143 Identities=16% Similarity=0.223 Sum_probs=102.5
Q ss_pred CCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 80 TNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
+.|++++++|+|+++. ++++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++.+. ++..+
T Consensus 333 ~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I~i~g~~i~~~~~~~~r~~i 411 (588)
T PRK13657 333 GAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRILIDGTDIRTVTRASLRRNI 411 (588)
T ss_pred CeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 4699999999997422 8999999999999999999999999999999 89999999999887531 11111
Q ss_pred CCCcc-----------------------cHHHHHHHHHHHHHHHH--hCCcch----hcccCChHHHHH-HHHHHhCCCC
Q 023675 150 SFKAE-----------------------DRVENIRRIGEVAKLFA--DAGVIC----IACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 150 ~~~~~-----------------------~~~~~~~~v~~~~~~~~--~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
+|.++ +.....+.+ .+...+. ..|+.. .+..+|+|++|| .++|++++++
T Consensus 412 ~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~-~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~ 490 (588)
T PRK13657 412 AVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERA-QAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDP 490 (588)
T ss_pred EEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHh-CHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 11111 111111110 0111111 112222 344589999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ +++|||++.++....+.+++.+.
T Consensus 491 ~i--liLDEpts~LD~~t~~~i~~~l~ 515 (588)
T PRK13657 491 PI--LILDEATSALDVETEAKVKAALD 515 (588)
T ss_pred CE--EEEeCCccCCCHHHHHHHHHHHH
Confidence 98 99999999999988887776544
No 90
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=1.9e-16 Score=136.64 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=94.6
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE 154 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~ 154 (279)
++++++++|.. +.+|++.+|++++|+|+||||||||+++|+|.+ .|++|.|.++|.++... ....++|.++
T Consensus 2 ~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 2 EVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred EEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 45555555543 448999999999999999999999999999999 89999999999775310 0011111111
Q ss_pred c--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675 155 D--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (279)
Q Consensus 155 ~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p 209 (279)
+ ..+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++ +++|||
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~l--lllDEP 158 (220)
T cd03265 81 DLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEV--LFLDEP 158 (220)
T ss_pred CccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence 1 0111100 001122222333322 244588899988 899999999998 999999
Q ss_pred ccchhccChhhHHHHH
Q 023675 210 LQVCEARDPKGLYKLA 225 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~~ 225 (279)
+..++....+.+++.+
T Consensus 159 t~~LD~~~~~~l~~~l 174 (220)
T cd03265 159 TIGLDPQTRAHVWEYI 174 (220)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 9999998877665543
No 91
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.69 E-value=2.2e-16 Score=135.33 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=95.3
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------cccCCCC
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLSF 151 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~~~~~~~ 151 (279)
++++++++|.. ..||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|
T Consensus 2 ~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 2 EIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred EEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccchhHHHHHhcceE
Confidence 45666666653 448999999999999999999999999999999 89999999999876310 1111222
Q ss_pred Cccc--------HHHHHHH-------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 152 KAED--------RVENIRR-------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 152 ~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
.+++ ..+.+.. .......+...++. .....+|+++++| .++++++.+|++ ++
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--ll 158 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKV--ML 158 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCE--EE
Confidence 1111 1111100 01112222223332 2234578888888 999999999998 99
Q ss_pred EeCCccchhccChhhHHHHHh
Q 023675 206 MDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|||+..++....+.+.+.+.
T Consensus 159 lDEP~~~LD~~~~~~l~~~l~ 179 (213)
T cd03262 159 FDEPTSALDPELVGEVLDVMK 179 (213)
T ss_pred EeCCccCCCHHHHHHHHHHHH
Confidence 999999999887766555433
No 92
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.69 E-value=6.1e-17 Score=137.85 Aligned_cols=133 Identities=19% Similarity=0.102 Sum_probs=91.5
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcc-ccCCccEEEEcCeeccccc-----ccCCCC
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL-----NRDLSF 151 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l-~~~~~G~i~ldgd~i~~~~-----~~~~~~ 151 (279)
++++++++|.. +.||++.+|++++|+|+||||||||+++|+|.+ ..|.+|.|.++|.++...- ...++|
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (200)
T cd03217 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL 81 (200)
T ss_pred eEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE
Confidence 45556665543 448999999999999999999999999999994 2789999999999875210 111333
Q ss_pred CcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 152 KAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
.++..... .. ......+ ......+++++++| .++++++.+|++ +++|||+..++......+++.
T Consensus 82 v~q~~~~~-~~-~~~~~~l-----~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~~~~l~~~ 146 (200)
T cd03217 82 AFQYPPEI-PG-VKNADFL-----RYVNEGFSGGEKKRNEILQLLLLEPDL--AILDEPDSGLDIDALRLVAEV 146 (200)
T ss_pred eecChhhc-cC-ccHHHHH-----hhccccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCHHHHHHHHHH
Confidence 33321100 00 0000000 11223678888888 899999999998 999999999988766665543
No 93
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.69 E-value=2.6e-16 Score=134.55 Aligned_cols=141 Identities=18% Similarity=0.152 Sum_probs=95.6
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc-
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE- 154 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~- 154 (279)
++++++++|.+ +.+|++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....+++.++
T Consensus 2 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 2 KTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred EEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 45666666643 348999999999999999999999999999999 89999999999876321 0111111111
Q ss_pred -------cHHHHHHH--------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675 155 -------DRVENIRR--------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (279)
Q Consensus 155 -------~~~~~~~~--------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~ 214 (279)
...+.+.. -..+..++...++.. ....+|+++++| .++++++.+|++ +++|||+..++
T Consensus 81 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~LD 158 (208)
T cd03268 81 PGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDL--LILDEPTNGLD 158 (208)
T ss_pred CccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCcccCC
Confidence 11111110 001122222233322 244588889888 899999999988 99999999999
Q ss_pred ccChhhHHHHHh
Q 023675 215 ARDPKGLYKLAR 226 (279)
Q Consensus 215 ~R~~~~l~~~~~ 226 (279)
....+.+++.+.
T Consensus 159 ~~~~~~l~~~l~ 170 (208)
T cd03268 159 PDGIKELRELIL 170 (208)
T ss_pred HHHHHHHHHHHH
Confidence 988776655433
No 94
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.69 E-value=1.8e-16 Score=143.32 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=97.3
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK 152 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~ 152 (279)
.+++++++++|.+ +.||++++|++++|+|+||||||||+++|+|++ .|++|.|.++|.++... ....++|.
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-SPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECcccHHHHhhcEEEE
Confidence 3677777777754 449999999999999999999999999999999 89999999999876321 11112221
Q ss_pred ccc--------HHHHHHH-----------H-HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 153 AED--------RVENIRR-----------I-GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 153 ~~~--------~~~~~~~-----------v-~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
+++ ..+.+.. . ..+..++...++. ..+..+|+++++| .++++++.+|++ ++||
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLD 160 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQL--LILD 160 (303)
T ss_pred eccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEe
Confidence 111 1111110 0 0111222222322 1344688899998 999999999998 9999
Q ss_pred CCccchhccChhhHHHH
Q 023675 208 VPLQVCEARDPKGLYKL 224 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~~~ 224 (279)
||+..++....+.+++.
T Consensus 161 EPt~gLD~~~~~~l~~~ 177 (303)
T TIGR01288 161 EPTTGLDPHARHLIWER 177 (303)
T ss_pred CCCcCCCHHHHHHHHHH
Confidence 99999999887765543
No 95
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.69 E-value=2.5e-16 Score=153.32 Aligned_cols=142 Identities=19% Similarity=0.171 Sum_probs=101.0
Q ss_pred CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
+.++++|++|+|+++ .||++++|+.++|+|+||||||||+++|+|++ +|.+|.|.+||.++.+. +...+
T Consensus 321 ~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i 399 (547)
T PRK10522 321 QTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVTAEQPEDYRKLF 399 (547)
T ss_pred ceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEECCCCCHHHHhhhe
Confidence 469999999999643 28999999999999999999999999999999 89999999999987531 12222
Q ss_pred CCCcccHHHHHH---------HHHHHHHHHHhCCcch---------hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675 150 SFKAEDRVENIR---------RIGEVAKLFADAGVIC---------IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (279)
Q Consensus 150 ~~~~~~~~~~~~---------~v~~~~~~~~~~~~~~---------i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~ 210 (279)
++.+++..-.-. .-..+.......+... .+..+|+++++| .++|+++++|++ +++|||+
T Consensus 400 ~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~i--lilDE~t 477 (547)
T PRK10522 400 SAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDI--LLLDEWA 477 (547)
T ss_pred EEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEECCC
Confidence 332222110000 0001111111111111 134688999999 999999999998 9999999
Q ss_pred cchhccChhhHHHH
Q 023675 211 QVCEARDPKGLYKL 224 (279)
Q Consensus 211 ~~l~~R~~~~l~~~ 224 (279)
+.++....+.+.+.
T Consensus 478 s~LD~~~~~~i~~~ 491 (547)
T PRK10522 478 ADQDPHFRREFYQV 491 (547)
T ss_pred CCCCHHHHHHHHHH
Confidence 99999887765544
No 96
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.69 E-value=2.9e-16 Score=129.89 Aligned_cols=127 Identities=23% Similarity=0.227 Sum_probs=90.5
Q ss_pred EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH
Q 023675 83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (279)
Q Consensus 83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~ 156 (279)
++++++++|.. ..+|++++|++++|+|+||||||||+++|+|++ .|.+|.|.+++..- ++|.+++.
T Consensus 2 ~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~-------i~~~~q~~ 73 (166)
T cd03223 2 ELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGRIGMPEGED-------LLFLPQRP 73 (166)
T ss_pred EEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCCce-------EEEECCCC
Confidence 45566666632 348999999999999999999999999999999 89999999988421 12222211
Q ss_pred HHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 157 VENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 157 ~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.-.-..+.+.... . ....+++++++| .++++++.+|++ +++|||+..++....+.+.+.+.
T Consensus 74 ~~~~~tv~~nl~~----~---~~~~LS~G~~~rv~laral~~~p~~--lllDEPt~~LD~~~~~~l~~~l~ 135 (166)
T cd03223 74 YLPLGTLREQLIY----P---WDDVLSGGEQQRLAFARLLLHKPKF--VFLDEATSALDEESEDRLYQLLK 135 (166)
T ss_pred ccccccHHHHhhc----c---CCCCCCHHHHHHHHHHHHHHcCCCE--EEEECCccccCHHHHHHHHHHHH
Confidence 0000001111000 0 235678888888 999999999998 99999999999988777666554
No 97
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.7e-16 Score=145.82 Aligned_cols=141 Identities=18% Similarity=0.202 Sum_probs=98.2
Q ss_pred eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675 82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L 145 (279)
Q Consensus 82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~ 145 (279)
+++++++++|. ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... .
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-RPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHH
Confidence 56677777775 2338999999999999999999999999999999 89999999999887421 1
Q ss_pred ccCCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675 146 NRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 146 ~~~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
...++|.+++ ..+.+.. ...+..++...++.. ....+|+++++| .++++++.+|+
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 1122222211 1111110 011122233333322 344588999998 99999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHH
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+ ++||||+..++......+++.+
T Consensus 161 i--LlLDEPts~LD~~~~~~l~~~L 183 (343)
T PRK11153 161 V--LLCDEATSALDPATTRSILELL 183 (343)
T ss_pred E--EEEeCCcccCCHHHHHHHHHHH
Confidence 8 9999999999998877655443
No 98
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.68 E-value=6.7e-17 Score=157.86 Aligned_cols=145 Identities=18% Similarity=0.245 Sum_probs=102.9
Q ss_pred CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.+++++++|+|++ +.+|++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++.+. +..
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~I~i~g~~i~~~~~~~~~~ 406 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQILLDGHDLADYTLASLRR 406 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEEECCEeHHhcCHHHHHh
Confidence 356999999999964 228999999999999999999999999999999 89999999999876421 111
Q ss_pred CCCCCccc-------HH-------------HHHHHHHHH---HHHHHh--CCc----chhcccCChHHHHH-HHHHHhCC
Q 023675 148 DLSFKAED-------RV-------------ENIRRIGEV---AKLFAD--AGV----ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 148 ~~~~~~~~-------~~-------------~~~~~v~~~---~~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
.++|.+++ .+ +.+....+. ...+.. .|+ ...+..+|+|++|| .++|++++
T Consensus 407 ~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~ 486 (571)
T TIGR02203 407 QVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLK 486 (571)
T ss_pred hceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 11111111 01 111111111 111111 122 12344589999999 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++++ ++||||++.++....+.+++.+.
T Consensus 487 ~~~i--llLDEpts~LD~~~~~~i~~~L~ 513 (571)
T TIGR02203 487 DAPI--LILDEATSALDNESERLVQAALE 513 (571)
T ss_pred CCCE--EEEeCccccCCHHHHHHHHHHHH
Confidence 9998 99999999999999888766544
No 99
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=2.5e-16 Score=139.01 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=95.8
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc--
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-- 154 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-- 154 (279)
++++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ...++|.++
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~-~~~~~~v~q~~ 79 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSITLDGKPVEGP-GAERGVVFQNE 79 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCC-CCcEEEEeCCC
Confidence 456677777753 349999999999999999999999999999999 89999999999876321 000111111
Q ss_pred ------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 155 ------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 155 ------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
...+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ +++|||+.
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~l--llLDEPt~ 157 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQL--LLLDEPFG 157 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence 11111100 011222233333322 344588899988 899999999998 99999999
Q ss_pred chhccChhhHHHH
Q 023675 212 VCEARDPKGLYKL 224 (279)
Q Consensus 212 ~l~~R~~~~l~~~ 224 (279)
.++......+.+.
T Consensus 158 ~LD~~~~~~l~~~ 170 (255)
T PRK11248 158 ALDAFTREQMQTL 170 (255)
T ss_pred cCCHHHHHHHHHH
Confidence 9999887765543
No 100
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.68 E-value=3.1e-16 Score=145.42 Aligned_cols=142 Identities=17% Similarity=0.139 Sum_probs=100.0
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~ 153 (279)
.+++++++++|.+ +.+|++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++.... ...++|.+
T Consensus 14 ~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~vf 92 (375)
T PRK09452 14 LVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSGRIMLDGQDITHVPAENRHVNTVF 92 (375)
T ss_pred eEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 4788888888864 348999999999999999999999999999999 899999999999874210 01112111
Q ss_pred c--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 154 E--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 154 ~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
+ ...+++.. ...+...+...++.. ....+|+++++| +++|+++.+|++ ++|||
T Consensus 93 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~l--lLLDE 170 (375)
T PRK09452 93 QSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKV--LLLDE 170 (375)
T ss_pred cCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence 1 11111110 011122222223322 344688999999 999999999998 99999
Q ss_pred CccchhccChhhHHHHH
Q 023675 209 PLQVCEARDPKGLYKLA 225 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~~ 225 (279)
|+..++......+.+.+
T Consensus 171 P~s~LD~~~r~~l~~~L 187 (375)
T PRK09452 171 SLSALDYKLRKQMQNEL 187 (375)
T ss_pred CCCcCCHHHHHHHHHHH
Confidence 99999998877755443
No 101
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.68 E-value=2.2e-16 Score=145.82 Aligned_cols=143 Identities=20% Similarity=0.203 Sum_probs=100.4
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCc--cEEEEcCeeccccc--ccCCC
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK--LTYILDGDNCRHGL--NRDLS 150 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~--G~i~ldgd~i~~~~--~~~~~ 150 (279)
+.+++++++.+|.. +.||++.+|++++|+||||||||||+++|+|++ .|++ |.|+++|.++.... ...++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~~~G~i~~~g~~~~~~~~~~r~ig 82 (362)
T TIGR03258 4 GGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTGRIAIADRDLTHAPPHKRGLA 82 (362)
T ss_pred eEEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCEEEEECCEECCCCCHHHCCEE
Confidence 35778888777754 348999999999999999999999999999999 8999 99999998874210 11122
Q ss_pred CCccc--------HHHHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 151 FKAED--------RVENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 151 ~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
+.+++ ..+.+.. ...+...+...++. .....+|+++++| .++|+++.+|++ ++
T Consensus 83 ~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~l--lL 160 (362)
T TIGR03258 83 LLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDV--LL 160 (362)
T ss_pred EEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 22211 1111110 01112222222332 2345689999999 999999999998 99
Q ss_pred EeCCccchhccChhhHHHHH
Q 023675 206 MDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~~~ 225 (279)
||||++.++......+.+.+
T Consensus 161 LDEP~s~LD~~~r~~l~~~l 180 (362)
T TIGR03258 161 LDEPLSALDANIRANMREEI 180 (362)
T ss_pred EcCccccCCHHHHHHHHHHH
Confidence 99999999998877765543
No 102
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.68 E-value=2.4e-16 Score=135.19 Aligned_cols=141 Identities=17% Similarity=0.127 Sum_probs=95.6
Q ss_pred EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCccc
Q 023675 83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED 155 (279)
Q Consensus 83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~~ 155 (279)
+++++++.|. ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....+++.++.
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 2 ELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred EEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCcccceEEEEecC
Confidence 4556666664 3449999999999999999999999999999999 89999999999876321 00111211111
Q ss_pred --------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675 156 --------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (279)
Q Consensus 156 --------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~ 210 (279)
..+.+.. ...+...+...++.. .+..+|+++++| .++++++.+|++ +++|||+
T Consensus 81 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l--lllDEPt 158 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKV--FLMDEPL 158 (213)
T ss_pred hhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence 1111100 011122233333322 234588888888 899999999998 9999999
Q ss_pred cchhccChhhHHHHHh
Q 023675 211 QVCEARDPKGLYKLAR 226 (279)
Q Consensus 211 ~~l~~R~~~~l~~~~~ 226 (279)
..++....+.+++.+.
T Consensus 159 ~~LD~~~~~~l~~~l~ 174 (213)
T cd03301 159 SNLDAKLRVQMRAELK 174 (213)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999988777655443
No 103
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.68 E-value=2.1e-16 Score=144.90 Aligned_cols=142 Identities=15% Similarity=0.095 Sum_probs=99.6
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFK 152 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~ 152 (279)
.|++++++.+|.+ +.||++++|++++|+||||||||||+++|+|++ .|++|.|.++|.++... ....++|.
T Consensus 41 ~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~-~p~~G~i~i~G~~~~~~~~~~~~~ig~v 119 (340)
T PRK13536 41 AIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SPDAGKITVLGVPVPARARLARARIGVV 119 (340)
T ss_pred eEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCceEEEECCEECCcchHHHhccEEEE
Confidence 4788888888864 449999999999999999999999999999999 89999999999887421 11112222
Q ss_pred ccc--------HHHHHHH---H--------H-HHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 153 AED--------RVENIRR---I--------G-EVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 153 ~~~--------~~~~~~~---v--------~-~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
+++ ..+.+.. . . ....++...++. ..+..+|+++++| .++++++.+|++ ++||
T Consensus 120 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~l--LiLD 197 (340)
T PRK13536 120 PQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQL--LILD 197 (340)
T ss_pred eCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCE--EEEE
Confidence 211 1111110 0 0 011222222322 1344578888888 999999999998 9999
Q ss_pred CCccchhccChhhHHHHH
Q 023675 208 VPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~~~~ 225 (279)
||+..++....+.+++.+
T Consensus 198 EPt~gLD~~~r~~l~~~l 215 (340)
T PRK13536 198 EPTTGLDPHARHLIWERL 215 (340)
T ss_pred CCCCCCCHHHHHHHHHHH
Confidence 999999998877655443
No 104
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.68 E-value=2.5e-16 Score=134.92 Aligned_cols=130 Identities=22% Similarity=0.260 Sum_probs=90.7
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCCcccH---------HHHH
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAEDR---------VENI 160 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~~~~~---------~~~~ 160 (279)
..||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....++|.+++. .+.+
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l 97 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEV 97 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHHH
Confidence 448999999999999999999999999999999 89999999999876421 111122222211 1111
Q ss_pred HH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 161 RR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 161 ~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
.. ......++...++.. ....+|+++++| .++++++.+|++ +++|||++.++....+.+++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEPt~~LD~~~~~~~~~ 175 (211)
T cd03225 98 AFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDI--LLLDEPTAGLDPAGRRELLE 175 (211)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCHHHHHHHHH
Confidence 10 011112233333322 344588899998 999999999998 99999999999988777665
Q ss_pred HHh
Q 023675 224 LAR 226 (279)
Q Consensus 224 ~~~ 226 (279)
.+.
T Consensus 176 ~l~ 178 (211)
T cd03225 176 LLK 178 (211)
T ss_pred HHH
Confidence 443
No 105
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.68 E-value=3.6e-16 Score=132.53 Aligned_cols=141 Identities=12% Similarity=0.086 Sum_probs=94.4
Q ss_pred eEEeecceeecCC----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc---
Q 023675 82 ILWHKNSVDKRDR----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE--- 154 (279)
Q Consensus 82 i~~~~~~~~~~~~----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~--- 154 (279)
+++++++++|..+ .||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++.......+++.++
T Consensus 2 l~~~~l~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 2 LSLHQLQFNIEQKNLFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred eEEEEeeEEECCcEEEEEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 3455666666432 48999999999999999999999999999999 899999999998763210000111110
Q ss_pred -----cHHHHHHH-------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675 155 -----DRVENIRR-------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (279)
Q Consensus 155 -----~~~~~~~~-------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~ 217 (279)
...+.+.. ...+...+...++. ..+..+++++++| .++++++.+|++ +++|||++.++...
T Consensus 81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~--lllDEP~~~LD~~~ 158 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL--WLLDEVETNLSKEN 158 (195)
T ss_pred CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHH
Confidence 11111110 01112222222221 1344578888888 899999999998 99999999999888
Q ss_pred hhhHHHHH
Q 023675 218 PKGLYKLA 225 (279)
Q Consensus 218 ~~~l~~~~ 225 (279)
.+.+.+.+
T Consensus 159 ~~~l~~~l 166 (195)
T PRK13541 159 RDLLNNLI 166 (195)
T ss_pred HHHHHHHH
Confidence 76655544
No 106
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.68 E-value=5.2e-17 Score=162.15 Aligned_cols=145 Identities=18% Similarity=0.197 Sum_probs=103.3
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.|++++++|+|+.. .||++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++++. ++.
T Consensus 453 ~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~I~idg~~i~~~~~~~~r~ 531 (694)
T TIGR01846 453 RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQVLVDGVDLAIADPAWLRR 531 (694)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEehhhCCHHHHHH
Confidence 4579999999999532 28999999999999999999999999999999 89999999999987531 111
Q ss_pred CCCCCccc-------HH------------HHHHHHHH---HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAED-------RV------------ENIRRIGE---VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~~-------~~------------~~~~~v~~---~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.+++.+++ .+ +.+....+ +...... .|+. ..+..+|+++++| .++|+++++
T Consensus 532 ~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~ 611 (694)
T TIGR01846 532 QMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGN 611 (694)
T ss_pred hCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhC
Confidence 12221111 01 11111111 1111111 1222 2345689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHh
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
|++ +++|||++.++....+.+++.+.
T Consensus 612 ~~i--lilDEpts~LD~~~~~~i~~~l~ 637 (694)
T TIGR01846 612 PRI--LIFDEATSALDYESEALIMRNMR 637 (694)
T ss_pred CCE--EEEECCCcCCCHHHHHHHHHHHH
Confidence 998 99999999999998887766544
No 107
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.1e-16 Score=146.57 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=97.8
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE 154 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~ 154 (279)
+++++++++|.+ +.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++... ....++|.++
T Consensus 4 l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 567777777754 449999999999999999999999999999999 89999999999887421 0011121111
Q ss_pred c--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675 155 D--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (279)
Q Consensus 155 ~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p 209 (279)
+ ..+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++ ++||||
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~l--LLLDEP 160 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDEP 160 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCC
Confidence 1 1111110 011222233333322 344688999999 999999999998 999999
Q ss_pred ccchhccChhhHHHH
Q 023675 210 LQVCEARDPKGLYKL 224 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~ 224 (279)
++.++....+.+.+.
T Consensus 161 ts~LD~~~~~~l~~~ 175 (369)
T PRK11000 161 LSNLDAALRVQMRIE 175 (369)
T ss_pred cccCCHHHHHHHHHH
Confidence 999999887765543
No 108
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.68 E-value=2.1e-16 Score=147.62 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=96.8
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK 152 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~ 152 (279)
+++++++++|.+ +.||.+++|++++|+||||||||||+++|+|++ .|.+|.|+++|.++... +...+++.
T Consensus 4 L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll-~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL-TPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred EEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 677788888864 349999999999999999999999999999999 89999999999887421 11111111
Q ss_pred cccH--------HHHHH----------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 153 AEDR--------VENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 153 ~~~~--------~~~~~----------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
++.. .+.+. ....+...+...++.. .+..+|+++++| .++++++.+|++
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~i-- 160 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPV-- 160 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence 1100 00000 0011112222223321 344688999999 999999999998
Q ss_pred EEEeCCccchhccChhhHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~ 223 (279)
++||||+..++......+++
T Consensus 161 LLLDEPtsgLD~~~~~~l~~ 180 (402)
T PRK09536 161 LLLDEPTASLDINHQVRTLE 180 (402)
T ss_pred EEEECCcccCCHHHHHHHHH
Confidence 99999999999987766544
No 109
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.68 E-value=2.6e-16 Score=136.71 Aligned_cols=139 Identities=17% Similarity=0.218 Sum_probs=94.8
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK 152 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~ 152 (279)
++++++++|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 2 RAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-KPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred eEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 45566666643 459999999999999999999999999999999 89999999999876311 01112221
Q ss_pred cc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 153 AE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
++ ...+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ ++||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllD 158 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKF--LLLD 158 (232)
T ss_pred cCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEec
Confidence 11 11111110 001112222223322 234578889888 999999999998 9999
Q ss_pred CCccchhccChhhHHHH
Q 023675 208 VPLQVCEARDPKGLYKL 224 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~~~ 224 (279)
||+..++....+.+++.
T Consensus 159 EPt~~LD~~~~~~~~~~ 175 (232)
T cd03218 159 EPFAGVDPIAVQDIQKI 175 (232)
T ss_pred CCcccCCHHHHHHHHHH
Confidence 99999999887775553
No 110
>PRK10908 cell division protein FtsE; Provisional
Probab=99.68 E-value=3e-16 Score=135.53 Aligned_cols=141 Identities=18% Similarity=0.240 Sum_probs=95.8
Q ss_pred eEEeecceee-c-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccC
Q 023675 82 ILWHKNSVDK-R-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRD 148 (279)
Q Consensus 82 i~~~~~~~~~-~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~ 148 (279)
+++++++++| . +..||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCChhHHHHHHhh
Confidence 4566666666 3 2348999999999999999999999999999999 89999999999876321 1111
Q ss_pred CCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 149 LSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 149 ~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
++|.++. ..+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-- 158 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAV-- 158 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCE--
Confidence 2221111 1111110 001112223333322 344588899888 899999999998
Q ss_pred EEEeCCccchhccChhhHHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++|||++.++....+.+.+.+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l 180 (222)
T PRK10908 159 LLADEPTGNLDDALSEGILRLF 180 (222)
T ss_pred EEEeCCCCcCCHHHHHHHHHHH
Confidence 9999999999988776655443
No 111
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.5e-16 Score=134.66 Aligned_cols=137 Identities=15% Similarity=0.193 Sum_probs=93.5
Q ss_pred eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeecccccccCCCC
Q 023675 82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGLNRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~~~~~~~~ 151 (279)
++++++++.|.. ..||++++|++++|+|+||||||||+++|+|.+. .|.+|+++++|.++.......++|
T Consensus 4 l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~ 83 (192)
T cd03232 4 LTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGY 83 (192)
T ss_pred EEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEE
Confidence 566777777753 2389999999999999999999999999999863 478999999998863211122233
Q ss_pred CcccHHHHH-HHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 152 KAEDRVENI-RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 152 ~~~~~~~~~-~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.++...... ..+.+....... ...+|+++++| .++++++.+|++ +++|||+..++....+.+.+.+.
T Consensus 84 ~~q~~~~~~~~tv~~~l~~~~~------~~~LSgGe~qrv~la~al~~~p~v--lllDEP~~~LD~~~~~~l~~~l~ 152 (192)
T cd03232 84 VEQQDVHSPNLTVREALRFSAL------LRGLSVEQRKRLTIGVELAAKPSI--LFLDEPTSGLDSQAAYNIVRFLK 152 (192)
T ss_pred ecccCccccCCcHHHHHHHHHH------HhcCCHHHhHHHHHHHHHhcCCcE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence 222210000 001111100000 01678888888 899999999998 99999999999888777665443
No 112
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=5.1e-16 Score=135.04 Aligned_cols=141 Identities=21% Similarity=0.198 Sum_probs=96.2
Q ss_pred eEEeecceeecCC---------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675 82 ILWHKNSVDKRDR---------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L 145 (279)
Q Consensus 82 i~~~~~~~~~~~~---------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~ 145 (279)
+++++++++|..+ .||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++... .
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE-RPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcccCCHHHHHHH
Confidence 4556666666433 38999999999999999999999999999999 89999999999876321 0
Q ss_pred ccCCCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675 146 NRDLSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 146 ~~~~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
...++|.++ ...+.+.. ...+...+...++.. ....+|+++++| .++++++.+|+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 111222111 11111110 011122233333322 234578888888 99999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHH
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+ ++||||+..++......+++.+
T Consensus 161 l--llLDEP~~~LD~~~~~~l~~~l 183 (233)
T cd03258 161 V--LLCDEATSALDPETTQSILALL 183 (233)
T ss_pred E--EEecCCCCcCCHHHHHHHHHHH
Confidence 8 9999999999998877655543
No 113
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=3.3e-16 Score=136.82 Aligned_cols=141 Identities=21% Similarity=0.229 Sum_probs=96.6
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE 154 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~ 154 (279)
++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|.++
T Consensus 3 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCCccccceEEEec
Confidence 566777777754 348999999999999999999999999999999 89999999999876321 0011111111
Q ss_pred --------cHHHHHHH----------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 155 --------DRVENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 155 --------~~~~~~~~----------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
...+.+.. ...+..++...++.. .+..+|+++++| .++++++.+|++ ++
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--ll 159 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKV--LL 159 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 01111100 011112233333321 234578889888 999999999998 99
Q ss_pred EeCCccchhccChhhHHHHH
Q 023675 206 MDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~~~ 225 (279)
||||+..++....+.+++.+
T Consensus 160 lDEP~~~LD~~~~~~l~~~l 179 (239)
T cd03296 160 LDEPFGALDAKVRKELRRWL 179 (239)
T ss_pred EcCCcccCCHHHHHHHHHHH
Confidence 99999999998877755433
No 114
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=3.6e-16 Score=136.08 Aligned_cols=142 Identities=22% Similarity=0.258 Sum_probs=98.5
Q ss_pred CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675 81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------- 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------- 144 (279)
.++++++++.|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-TPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCCHHHHHH
Confidence 3677788777753 238999999999999999999999999999999 89999999999876421
Q ss_pred c-ccCCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675 145 L-NRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 145 ~-~~~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
. ...++|.+++ ..+.+.. ...+...+...++.. ....+|+++++| .++++++.+
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~ 163 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNN 163 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 0 0112221111 1111110 011222233333322 334588899888 899999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
|++ ++||||++.++......+.+.+
T Consensus 164 p~l--llLDEPt~~LD~~~~~~l~~~l 188 (233)
T PRK11629 164 PRL--VLADEPTGNLDARNADSIFQLL 188 (233)
T ss_pred CCE--EEEeCCCCCCCHHHHHHHHHHH
Confidence 998 9999999999998877655543
No 115
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.68 E-value=3.1e-16 Score=136.74 Aligned_cols=141 Identities=17% Similarity=0.180 Sum_probs=96.8
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc---ccCCCCCc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDLSFKA 153 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~---~~~~~~~~ 153 (279)
+++++++++|.+ ..||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++.... ...++|.+
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 456677777753 348999999999999999999999999999999 899999999998763210 01111111
Q ss_pred cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
++ ..+.+.. ...+...+...++.. .+..+|+++++| .++++++.+|++ +++||
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDE 158 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPAL--LLLDE 158 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 11 1111110 011122223333322 344588899888 899999999998 99999
Q ss_pred CccchhccChhhHHHHH
Q 023675 209 PLQVCEARDPKGLYKLA 225 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~~ 225 (279)
|+..++....+.+++.+
T Consensus 159 P~~~LD~~~~~~l~~~l 175 (236)
T TIGR03864 159 PTVGLDPASRAAIVAHV 175 (236)
T ss_pred CccCCCHHHHHHHHHHH
Confidence 99999998877755533
No 116
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.68 E-value=3.4e-16 Score=135.01 Aligned_cols=141 Identities=21% Similarity=0.249 Sum_probs=96.2
Q ss_pred eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------
Q 023675 82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------- 144 (279)
Q Consensus 82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------- 144 (279)
+++++++++|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcCHhHHHHH
Confidence 355666666642 338999999999999999999999999999999 89999999999876321
Q ss_pred cccCCCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCC
Q 023675 145 LNRDLSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 145 ~~~~~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
....++|.++ ...+.+.. ...+..++...++.. ....+|+++++| .++++++.+|
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 0011121111 11111100 011122233333322 344688999998 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHH
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++ ++||||+..++......+.+.+
T Consensus 161 ~i--lllDEPt~~LD~~~~~~l~~~l 184 (221)
T TIGR02211 161 SL--VLADEPTGNLDNNNAKIIFDLM 184 (221)
T ss_pred CE--EEEeCCCCcCCHHHHHHHHHHH
Confidence 98 9999999999988877665544
No 117
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.68 E-value=4.4e-16 Score=135.61 Aligned_cols=140 Identities=17% Similarity=0.184 Sum_probs=95.0
Q ss_pred EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675 83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK 152 (279)
Q Consensus 83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~ 152 (279)
+++++++.|. ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|.
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred eeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 3455555554 3459999999999999999999999999999999 89999999999876421 01112221
Q ss_pred cc--------cHHHHHHH----------------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCC
Q 023675 153 AE--------DRVENIRR----------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 153 ~~--------~~~~~~~~----------------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~ 197 (279)
++ ...+.+.. ...+...+...++.. .+..+|+++++| .++++++.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 11 11111100 001122222333322 334588899888 89999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|++ +++|||+..++......+++.+
T Consensus 161 ~p~l--lllDEPt~~LD~~~~~~l~~~l 186 (236)
T cd03219 161 DPKL--LLLDEPAAGLNPEETEELAELI 186 (236)
T ss_pred CCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence 9998 9999999999988877665544
No 118
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.68 E-value=1.9e-16 Score=134.20 Aligned_cols=137 Identities=18% Similarity=0.217 Sum_probs=95.5
Q ss_pred eEEeecceeecC-----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeecccc-cccC
Q 023675 82 ILWHKNSVDKRD-----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHG-LNRD 148 (279)
Q Consensus 82 i~~~~~~~~~~~-----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~-~~~~ 148 (279)
+++++++++|.. +.+|++++|++++|+|+||||||||+++|+|++. .|.+|.|.++|.++... ....
T Consensus 4 l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (194)
T cd03213 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKI 83 (194)
T ss_pred EEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhhe
Confidence 677788888864 2289999999999999999999999999999872 57899999999887421 1112
Q ss_pred CCCCcccHHHHH-HHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 149 LSFKAEDRVENI-RRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 149 ~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++.+++..... ..+.+....... ...+|+++++| .++++++.+|++ +++|||+..++....+.+++.+.
T Consensus 84 i~~~~q~~~~~~~~t~~~~i~~~~~------~~~LS~G~~qrv~laral~~~p~i--lllDEP~~~LD~~~~~~l~~~l~ 155 (194)
T cd03213 84 IGYVPQDDILHPTLTVRETLMFAAK------LRGLSGGERKRVSIALELVSNPSL--LFLDEPTSGLDSSSALQVMSLLR 155 (194)
T ss_pred EEEccCcccCCCCCcHHHHHHHHHH------hccCCHHHHHHHHHHHHHHcCCCE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence 233322211000 001111100000 01678888888 999999999998 99999999999988777665544
No 119
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=3.3e-16 Score=133.93 Aligned_cols=140 Identities=11% Similarity=0.163 Sum_probs=101.7
Q ss_pred eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH----
Q 023675 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV---- 157 (279)
Q Consensus 82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~---- 157 (279)
++..+.++.+.++.||.+++|++.+|+|+||+||||++++|.+++ .|++|.|.++|.++.......++|-++++.
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll-e~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k 86 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL-EPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPK 86 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC-CccCceEEEcCcchhhhhhhhcccChhhhccCcc
Confidence 344445566667779999999999999999999999999999999 899999999999998888888899888762
Q ss_pred ----HHHHHHH------------HHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 158 ----ENIRRIG------------EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 158 ----~~~~~v~------------~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
..+.+++ ++...+....+.. -+..+|-+.+|. ..+.+++.+|++ ++||||++.|++-
T Consensus 87 ~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL--lILDEPFSGLDPV 164 (300)
T COG4152 87 MTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL--LILDEPFSGLDPV 164 (300)
T ss_pred CcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE--EEecCCccCCChh
Confidence 1111111 1111122222211 223345444554 888999999999 9999999999998
Q ss_pred ChhhHHHH
Q 023675 217 DPKGLYKL 224 (279)
Q Consensus 217 ~~~~l~~~ 224 (279)
..+-|-+.
T Consensus 165 N~elLk~~ 172 (300)
T COG4152 165 NVELLKDA 172 (300)
T ss_pred hHHHHHHH
Confidence 76554443
No 120
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=2.6e-16 Score=136.41 Aligned_cols=143 Identities=19% Similarity=0.205 Sum_probs=96.6
Q ss_pred CeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCC
Q 023675 81 NILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~ 150 (279)
.+++++++++|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... +...++
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-DPQKGQILIDGIDIRDISRKSLRSMIG 80 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEeHHHcCHHHHhhhEE
Confidence 4677788777753 238999999999999999999999999999999 89999999999876321 111122
Q ss_pred CCcccH-------HHHH---------HHHHH------HHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675 151 FKAEDR-------VENI---------RRIGE------VAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 151 ~~~~~~-------~~~~---------~~v~~------~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
|.++.. .+.+ ..+.. +...+... ++. .....+++++++| .++++++.+|++
T Consensus 81 ~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 81 VVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred EecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 222211 0000 00000 00000000 111 1235688889888 999999999998
Q ss_pred cEEEEeCCccchhccChhhHHHHHh
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++|||+..++....+.+++.+.
T Consensus 161 --lllDEP~~~LD~~~~~~l~~~l~ 183 (229)
T cd03254 161 --LILDEATSNIDTETEKLIQEALE 183 (229)
T ss_pred --EEEeCccccCCHHHHHHHHHHHH
Confidence 99999999999988777665443
No 121
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.68 E-value=3e-17 Score=136.42 Aligned_cols=127 Identities=17% Similarity=0.263 Sum_probs=93.0
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHH--------HH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRV--------EN 159 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~--------~~ 159 (279)
.+.||.+.+||+++|.||||+||||.+.++.|+. .|++|.|++|+.|+... .+..++|-+++.. +.
T Consensus 21 ~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dN 99 (243)
T COG1137 21 NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-RPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDN 99 (243)
T ss_pred eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE-ecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHH
Confidence 3459999999999999999999999999999999 99999999999998532 2234556555321 00
Q ss_pred HH--------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 160 IR--------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 160 ~~--------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
+. +-..+-.++.++.+.. .+..+|++++.| ++||+++.+|.| ++||||++.+++-....
T Consensus 100 i~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~f--iLLDEPFAGVDPiaV~d 177 (243)
T COG1137 100 IMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKF--ILLDEPFAGVDPIAVID 177 (243)
T ss_pred HHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCE--EEecCCccCCCchhHHH
Confidence 00 0011223334433332 344688888888 999999999999 99999999999876655
Q ss_pred HH
Q 023675 221 LY 222 (279)
Q Consensus 221 l~ 222 (279)
+.
T Consensus 178 Iq 179 (243)
T COG1137 178 IQ 179 (243)
T ss_pred HH
Confidence 33
No 122
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.68 E-value=1.6e-16 Score=132.74 Aligned_cols=94 Identities=21% Similarity=0.206 Sum_probs=79.0
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV 175 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (279)
++++++|++++|+|+||||||||+++|+|++ .|++|.|.++|..+. +.++.. .
T Consensus 19 ~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~--------~~~q~~-----------------~- 71 (177)
T cd03222 19 LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDGITPV--------YKPQYI-----------------D- 71 (177)
T ss_pred CcEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECCEEEE--------EEcccC-----------------C-
Confidence 5799999999999999999999999999999 899999999997642 222110 0
Q ss_pred chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 176 ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 176 ~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+++++++| .++++++.+|++ +++|||+..++....+.+.+.
T Consensus 72 ------LSgGq~qrv~laral~~~p~l--llLDEPts~LD~~~~~~l~~~ 113 (177)
T cd03222 72 ------LSGGELQRVAIAAALLRNATF--YLFDEPSAYLDIEQRLNAARA 113 (177)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHHHHH
Confidence 78888888 999999999988 999999999998887765543
No 123
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.67 E-value=4e-16 Score=135.04 Aligned_cols=142 Identities=22% Similarity=0.225 Sum_probs=96.4
Q ss_pred eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675 82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L 145 (279)
Q Consensus 82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~ 145 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++... .
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccchhhHHHh
Confidence 456666666643 238999999999999999999999999999999 89999999999876421 1
Q ss_pred ccCCCCCcccH----------HHHHH------------H-HHHH-HHHHHhCCcc-----hhcccCChHHHHH-HHHHHh
Q 023675 146 NRDLSFKAEDR----------VENIR------------R-IGEV-AKLFADAGVI-----CIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 146 ~~~~~~~~~~~----------~~~~~------------~-v~~~-~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l 195 (279)
...++|.++.. .+.+. . .... ...+...++. .....+|+++++| .+++++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 11122211110 11110 0 0111 1222333331 1234578889888 999999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+.+|++ ++||||++.++....+.+++.+.
T Consensus 161 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~ 189 (228)
T cd03257 161 ALNPKL--LIADEPTSALDVSVQAQILDLLK 189 (228)
T ss_pred hcCCCE--EEecCCCCCCCHHHHHHHHHHHH
Confidence 999998 99999999999888776655443
No 124
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.67 E-value=3.2e-16 Score=144.42 Aligned_cols=141 Identities=20% Similarity=0.206 Sum_probs=97.6
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE 154 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~ 154 (279)
++++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++... ....++|.++
T Consensus 3 L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 556677666654 459999999999999999999999999999999 89999999999887421 0011121111
Q ss_pred c--------HHHHHHH----------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 155 D--------RVENIRR----------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 155 ~--------~~~~~~~----------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
+ ..+++.. ...+..++...++.. ....+|+++++| .++|+++.+|++ ++
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~l--lL 159 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQI--LL 159 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 1 0111100 011222233333322 344588999999 999999999998 99
Q ss_pred EeCCccchhccChhhHHHHH
Q 023675 206 MDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|||+..++......+.+.+
T Consensus 160 LDEP~s~LD~~~r~~l~~~L 179 (353)
T PRK10851 160 LDEPFGALDAQVRKELRRWL 179 (353)
T ss_pred EeCCCccCCHHHHHHHHHHH
Confidence 99999999998877655443
No 125
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.67 E-value=4.6e-16 Score=134.75 Aligned_cols=142 Identities=21% Similarity=0.188 Sum_probs=96.7
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc----cCCccEEEEcCeecccc------ccc
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRHG------LNR 147 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~----~~~~G~i~ldgd~i~~~------~~~ 147 (279)
++++++++|.. +.||++.+|++++|+|+||||||||+++|+|++. .|.+|.|+++|.++... ...
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (227)
T cd03260 2 ELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRR 81 (227)
T ss_pred EEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHh
Confidence 45666666653 3489999999999999999999999999999972 57899999999876321 111
Q ss_pred CCCCCccc-------HHHHHHH-------------HHHHHHHHHhCCcch----h--cccCChHHHHH-HHHHHhCCCCC
Q 023675 148 DLSFKAED-------RVENIRR-------------IGEVAKLFADAGVIC----I--ACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 148 ~~~~~~~~-------~~~~~~~-------------v~~~~~~~~~~~~~~----i--~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
.++|.+++ ..+.+.. ...+..++...++.. . +..+|+++++| .++++++.+|+
T Consensus 82 ~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ 161 (227)
T cd03260 82 RVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPE 161 (227)
T ss_pred hEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 12221111 1111100 011122233333321 1 35688999998 99999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ +++|||+..++....+.+++.++
T Consensus 162 l--lllDEPt~~LD~~~~~~l~~~l~ 185 (227)
T cd03260 162 V--LLLDEPTSALDPISTAKIEELIA 185 (227)
T ss_pred E--EEEeCCCccCCHHHHHHHHHHHH
Confidence 8 99999999999988777665444
No 126
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.3e-16 Score=136.65 Aligned_cols=142 Identities=19% Similarity=0.225 Sum_probs=96.4
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~ 150 (279)
.++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++... ....++
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-RATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 3677888887764 339999999999999999999999999999999 89999999999876321 111111
Q ss_pred CCcc--------cHHHHH-------------HHHHHHHHHHH--hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675 151 FKAE--------DRVENI-------------RRIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (279)
Q Consensus 151 ~~~~--------~~~~~~-------------~~v~~~~~~~~--~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l 206 (279)
|.++ ...+.+ ..+......+. ..........+|+++++| .++++++.+|++ +++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~i--lll 161 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRL--LLL 161 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCE--EEE
Confidence 1111 001110 11111111110 000112344578888888 899999999998 999
Q ss_pred eCCccchhccChhhHHHHH
Q 023675 207 DVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 207 d~p~~~l~~R~~~~l~~~~ 225 (279)
|||+..++....+.+++.+
T Consensus 162 DEPt~~LD~~~~~~l~~~l 180 (237)
T PRK11614 162 DEPSLGLAPIIIQQIFDTI 180 (237)
T ss_pred cCccccCCHHHHHHHHHHH
Confidence 9999999998877765543
No 127
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.8e-16 Score=139.85 Aligned_cols=141 Identities=18% Similarity=0.149 Sum_probs=96.9
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------cccCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLS 150 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~~~~~~ 150 (279)
+++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++
T Consensus 2 l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCccEEEECCEEcccccCCHHHHHhheE
Confidence 456777777754 349999999999999999999999999999999 89999999999886310 111222
Q ss_pred CCcccH---------HHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 151 FKAEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 151 ~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
|.+++. ...+.. . ..+...+...++.. ....+|+++++| .++++++.+|++ +
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~l--l 158 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARY--L 158 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCE--E
Confidence 222211 111100 0 01111222223211 234578889888 899999999998 9
Q ss_pred EEeCCccchhccChhhHHHHH
Q 023675 205 FMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+||||+..++......+++.+
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l 179 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAII 179 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHH
Confidence 999999999998877655443
No 128
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=4.2e-16 Score=133.57 Aligned_cols=140 Identities=15% Similarity=0.146 Sum_probs=95.3
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE 154 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~ 154 (279)
+++++++.|.. +.||++++| +++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....+++.++
T Consensus 2 ~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 2 QLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-PPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred EEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCCccccchHHHHhheEEecC
Confidence 45666666643 458999999 99999999999999999999999 89999999999876321 0111111111
Q ss_pred --------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675 155 --------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (279)
Q Consensus 155 --------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p 209 (279)
...+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++ +++|||
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEP 157 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSI--LIVDEP 157 (211)
T ss_pred CCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCC
Confidence 11111110 011122223333322 344588889888 999999999998 999999
Q ss_pred ccchhccChhhHHHHHh
Q 023675 210 LQVCEARDPKGLYKLAR 226 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~~~ 226 (279)
+..++....+.+++.++
T Consensus 158 t~~LD~~~~~~l~~~l~ 174 (211)
T cd03264 158 TAGLDPEERIRFRNLLS 174 (211)
T ss_pred cccCCHHHHHHHHHHHH
Confidence 99999988777665444
No 129
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3e-16 Score=145.68 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=99.4
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~ 153 (279)
.+++++++++|.+ +.+|++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++... ....++|.+
T Consensus 19 ~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~vf 97 (377)
T PRK11607 19 LLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPTAGQIMLDGVDLSHVPPYQRPINMMF 97 (377)
T ss_pred eEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 4788888887754 459999999999999999999999999999999 89999999999987321 011122222
Q ss_pred cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
++ ..+++.. ...+..++...++.. ....+|+++++| .++|+++.+|++ ++|||
T Consensus 98 Q~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~l--LLLDE 175 (377)
T PRK11607 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKL--LLLDE 175 (377)
T ss_pred CCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence 11 1111110 011122222233322 344689999999 999999999998 99999
Q ss_pred CccchhccChhhHHH
Q 023675 209 PLQVCEARDPKGLYK 223 (279)
Q Consensus 209 p~~~l~~R~~~~l~~ 223 (279)
|+..++......+.+
T Consensus 176 P~s~LD~~~r~~l~~ 190 (377)
T PRK11607 176 PMGALDKKLRDRMQL 190 (377)
T ss_pred CcccCCHHHHHHHHH
Confidence 999999988766543
No 130
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.67 E-value=1.8e-16 Score=136.09 Aligned_cols=131 Identities=18% Similarity=0.228 Sum_probs=88.6
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---ccc---ccCCCC---CcccHHHHHH--
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGL---NRDLSF---KAEDRVENIR-- 161 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~~---~~~~~~---~~~~~~~~~~-- 161 (279)
++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++. ..+ .....+ ......+.+.
T Consensus 16 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~ 94 (213)
T cd03235 16 EDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-KPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMG 94 (213)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHHHHHHhc
Confidence 3458999999999999999999999999999999 899999999997652 110 000000 0000001000
Q ss_pred --------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 162 --------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 162 --------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
....+...+...++.. ....+|+++++| .++++++.+|++ +++|||++.++....+.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--lllDEPt~~LD~~~~~~l~ 172 (213)
T cd03235 95 LYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDL--LLLDEPFAGVDPKTQEDIY 172 (213)
T ss_pred cccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCHHHHHHHH
Confidence 0011122222223321 344688899998 999999999998 9999999999998877665
Q ss_pred HHHh
Q 023675 223 KLAR 226 (279)
Q Consensus 223 ~~~~ 226 (279)
+.+.
T Consensus 173 ~~l~ 176 (213)
T cd03235 173 ELLR 176 (213)
T ss_pred HHHH
Confidence 5443
No 131
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=6.2e-16 Score=131.60 Aligned_cols=142 Identities=16% Similarity=0.171 Sum_probs=95.8
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKA 153 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~ 153 (279)
+.+++++++|.+ +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|.+
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEEECCCccccCHHHHHhheEEec
Confidence 455666666653 338999999999999999999999999999999 89999999999876421 111111111
Q ss_pred c--------cHHHHHHHH-------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675 154 E--------DRVENIRRI-------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (279)
Q Consensus 154 ~--------~~~~~~~~v-------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l 213 (279)
+ ...+.+... ..+...+...++.. ....+++++++| .++++++.+|++ +++|||+..+
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~--lilDEP~~~L 158 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKL--WLLDEPLVAL 158 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCccc
Confidence 1 111111100 01112222222211 233578888888 999999999998 9999999999
Q ss_pred hccChhhHHHHHh
Q 023675 214 EARDPKGLYKLAR 226 (279)
Q Consensus 214 ~~R~~~~l~~~~~ 226 (279)
+......+.+.++
T Consensus 159 D~~~~~~l~~~l~ 171 (200)
T PRK13540 159 DELSLLTIITKIQ 171 (200)
T ss_pred CHHHHHHHHHHHH
Confidence 9888776655443
No 132
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=5.7e-16 Score=138.18 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=98.9
Q ss_pred CeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCC
Q 023675 81 NILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~ 150 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... +...++
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHhhEE
Confidence 3677777777752 238999999999999999999999999999999 89999999999887421 111223
Q ss_pred CCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 151 FKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 151 ~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
|.++.. .+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++ +
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~l--l 160 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDV--I 160 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence 322221 111110 011122222333322 344688899888 999999999998 9
Q ss_pred EEeCCccchhccChhhHHHHH
Q 023675 205 FMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++|||+..++......+.+.+
T Consensus 161 llDEPt~~LD~~~~~~l~~~l 181 (274)
T PRK13647 161 VLDEPMAYLDPRGQETLMEIL 181 (274)
T ss_pred EEECCCcCCCHHHHHHHHHHH
Confidence 999999999998877655433
No 133
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.67 E-value=4.2e-16 Score=136.79 Aligned_cols=141 Identities=21% Similarity=0.176 Sum_probs=97.3
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-----ccEEEEcCeecccc------c
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRHG------L 145 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-----~G~i~ldgd~i~~~------~ 145 (279)
+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|. +|.|+++|.++... .
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN-DLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCcCCCCceEEEECCEEccccccchHHH
Confidence 466777777753 449999999999999999999999999999999 777 99999999887421 1
Q ss_pred ccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l~ 196 (279)
...++|.+++ ..+.+.. . .....++...++. .....+|+++++| .++++++
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 160 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALA 160 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 1112222111 1111110 0 1111222233332 1234578899998 8999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ +++|||+..++......+++.+
T Consensus 161 ~~p~l--lllDEPt~~LD~~~~~~l~~~l 187 (247)
T TIGR00972 161 VEPEV--LLLDEPTSALDPIATGKIEELI 187 (247)
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 99998 9999999999988877665543
No 134
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.9e-16 Score=137.63 Aligned_cols=140 Identities=22% Similarity=0.230 Sum_probs=101.7
Q ss_pred CeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCC
Q 023675 81 NILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~ 149 (279)
.++++++.|+|.++ .|+.+++|+.++|+|+||||||||+++|+|++ .|.+|.|+++|.++.. .+...+
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl-~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL-KPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC-cCCCCEEEECCeeccchhhHHHhhcce
Confidence 46788889999765 29999999999999999999999999999999 8999999999987541 111112
Q ss_pred CCCccc------------------------HHHHHHHHHHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCC
Q 023675 150 SFKAED------------------------RVENIRRIGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 150 ~~~~~~------------------------~~~~~~~v~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
++.++. ..+..+++.+. +...++ ..-...+|+++++| ++|..++.+|+
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~---l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ 158 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEA---LELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPE 158 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHH---HHHcCchhhccCCccccCCcceeeHHhhHHHHcCCC
Confidence 221111 11122222222 222233 22345688999999 89999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ ++||||++.++.+..+.+.+...
T Consensus 159 i--liLDEPta~LD~~~~~~l~~~l~ 182 (235)
T COG1122 159 I--LLLDEPTAGLDPKGRRELLELLK 182 (235)
T ss_pred E--EEEcCCCCCCCHHHHHHHHHHHH
Confidence 8 99999999999998887665443
No 135
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.67 E-value=1.4e-15 Score=134.47 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=98.9
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---c---ccC
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---L---NRD 148 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~---~~~ 148 (279)
..+++++++++|..+ .||++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++... + ...
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-TPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEHHHhhCceEEEecC
Confidence 458899999888643 39999999999999999999999999999999 89999999999765211 0 011
Q ss_pred CCCCc-ccHHHHHHH------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 149 LSFKA-EDRVENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 149 ~~~~~-~~~~~~~~~------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
..+-+ ....+.+.. -.....++...++.. .+..+|+++++| .++++++.+|++ ++||||+..++..
T Consensus 90 ~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l--llLDEPt~~LD~~ 167 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL--LLLDEPLGALDAL 167 (257)
T ss_pred ccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCHH
Confidence 11101 111111110 011222233333322 344688899998 999999999998 9999999999988
Q ss_pred ChhhHHHH
Q 023675 217 DPKGLYKL 224 (279)
Q Consensus 217 ~~~~l~~~ 224 (279)
....+.+.
T Consensus 168 ~~~~l~~~ 175 (257)
T PRK11247 168 TRIEMQDL 175 (257)
T ss_pred HHHHHHHH
Confidence 77665543
No 136
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.67 E-value=6.8e-16 Score=131.48 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=95.4
Q ss_pred EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675 83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE 154 (279)
Q Consensus 83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~ 154 (279)
+++++++.|. ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.++
T Consensus 2 ~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 2 EADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred EEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEecccccHHhhhheEEecc
Confidence 3455555554 3459999999999999999999999999999999 89999999999876321 1111111111
Q ss_pred --------cHHHHHHH------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675 155 --------DRVENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (279)
Q Consensus 155 --------~~~~~~~~------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~ 215 (279)
...+.+.. ...+...+...++.. ....+++++++| .++++++.+|++ +++|||+..++.
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~LD~ 158 (201)
T cd03231 81 APGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPL--WILDEPTTALDK 158 (201)
T ss_pred ccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCCCCCH
Confidence 11111110 011122222233321 234578888888 999999999998 999999999999
Q ss_pred cChhhHHHHHh
Q 023675 216 RDPKGLYKLAR 226 (279)
Q Consensus 216 R~~~~l~~~~~ 226 (279)
...+.+.+.+.
T Consensus 159 ~~~~~l~~~l~ 169 (201)
T cd03231 159 AGVARFAEAMA 169 (201)
T ss_pred HHHHHHHHHHH
Confidence 88777665443
No 137
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.67 E-value=6e-16 Score=134.34 Aligned_cols=140 Identities=19% Similarity=0.162 Sum_probs=94.2
Q ss_pred EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675 83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK 152 (279)
Q Consensus 83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~ 152 (279)
+++++++.|. ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++... ....++|.
T Consensus 2 ~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL-PVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred EEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 4566666665 3459999999999999999999999999999999 89999999999876321 11112222
Q ss_pred ccc--------HHHHHH------------HHHHHHHHHH--hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675 153 AED--------RVENIR------------RIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (279)
Q Consensus 153 ~~~--------~~~~~~------------~v~~~~~~~~--~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p 209 (279)
+++ ..+.+. ...+....+. ..........+|+++++| .++++++.+|++ +++|||
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~i--lllDEP 158 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKL--LLLDEP 158 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEecCC
Confidence 211 111111 0011111111 000112234578888888 899999999998 999999
Q ss_pred ccchhccChhhHHHHH
Q 023675 210 LQVCEARDPKGLYKLA 225 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~~ 225 (279)
+..++......+.+.+
T Consensus 159 t~~LD~~~~~~l~~~l 174 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVI 174 (230)
T ss_pred cccCCHHHHHHHHHHH
Confidence 9999988777655543
No 138
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.67 E-value=4.5e-16 Score=136.02 Aligned_cols=141 Identities=21% Similarity=0.238 Sum_probs=96.4
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------cccCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDLS 150 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~~~~~~ 150 (279)
++++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++... ....++
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCChhHHHHhhceE
Confidence 456677766653 449999999999999999999999999999999 89999999999886421 111122
Q ss_pred CCccc--------HHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 151 FKAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 151 ~~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
|.++. ..+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++ +
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--l 158 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKL--M 158 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCE--E
Confidence 11111 1111100 011122233333322 234578888888 999999999998 9
Q ss_pred EEeCCccchhccChhhHHHHH
Q 023675 205 FMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++|||+..++......+.+.+
T Consensus 159 llDEP~~~LD~~~~~~l~~~l 179 (240)
T PRK09493 159 LFDEPTSALDPELRHEVLKVM 179 (240)
T ss_pred EEcCCcccCCHHHHHHHHHHH
Confidence 999999999998877655443
No 139
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=6.4e-16 Score=135.19 Aligned_cols=141 Identities=17% Similarity=0.192 Sum_probs=96.6
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----------ccc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------GLN 146 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----------~~~ 146 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++.. ...
T Consensus 3 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEecccccccchhhHHHHH
Confidence 566777777754 338999999999999999999999999999999 8999999999987520 001
Q ss_pred cCCCCCccc--------HHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675 147 RDLSFKAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 147 ~~~~~~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
..++|.++. ..+.+.. ...+...+...++.. ....+|+++++| .++++++.+|+
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 112221111 1111110 011122222333322 234578889888 99999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHH
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+ +++|||++.++......+++.+
T Consensus 162 l--lilDEPt~~LD~~~~~~l~~~l 184 (242)
T PRK11124 162 V--LLFDEPTAALDPEITAQIVSII 184 (242)
T ss_pred E--EEEcCCCCcCCHHHHHHHHHHH
Confidence 8 9999999999988776655443
No 140
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.67 E-value=1.6e-15 Score=129.44 Aligned_cols=142 Identities=18% Similarity=0.227 Sum_probs=96.1
Q ss_pred eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCC---
Q 023675 82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLS--- 150 (279)
Q Consensus 82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~--- 150 (279)
+++++++++|. .+.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA-RPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 34556655554 3459999999999999999999999999999999 89999999999876321 011111
Q ss_pred ----CCc-ccHHHHHHH---------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 151 ----FKA-EDRVENIRR---------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 151 ----~~~-~~~~~~~~~---------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
+.+ ....+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ +++|||++
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~ 158 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPL--WILDEPFT 158 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCc
Confidence 111 011111111 011122233333321 234578888888 899999999998 99999999
Q ss_pred chhccChhhHHHHHh
Q 023675 212 VCEARDPKGLYKLAR 226 (279)
Q Consensus 212 ~l~~R~~~~l~~~~~ 226 (279)
.++......+++.+.
T Consensus 159 ~LD~~~~~~l~~~l~ 173 (204)
T PRK13538 159 AIDKQGVARLEALLA 173 (204)
T ss_pred cCCHHHHHHHHHHHH
Confidence 999888777655433
No 141
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=5.6e-16 Score=141.10 Aligned_cols=143 Identities=16% Similarity=0.093 Sum_probs=100.4
Q ss_pred CCeEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----
Q 023675 80 TNILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----- 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----- 144 (279)
..|+++++++.|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-~p~~G~I~i~g~~~~~~~~~~~ 98 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KSKYGTIQVGDIYIGDKKNNHE 98 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCEEccccccccc
Confidence 45899999999863 228999999999999999999999999999999 89999999999765321
Q ss_pred ---------------cccCCCCCccc---------HHHHHH-----------HH-HHHHHHHHhCCcc-----hhcccCC
Q 023675 145 ---------------LNRDLSFKAED---------RVENIR-----------RI-GEVAKLFADAGVI-----CIACLIS 183 (279)
Q Consensus 145 ---------------~~~~~~~~~~~---------~~~~~~-----------~v-~~~~~~~~~~~~~-----~i~~~~~ 183 (279)
+...+++.+++ ..+.+. .. ......+...++. ..+..+|
T Consensus 99 ~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LS 178 (320)
T PRK13631 99 LITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCC
Confidence 11112222221 111110 00 1111222233332 1234588
Q ss_pred hHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 184 PYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 184 ~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++++| .++++++.+|++ +++|||+..++....+.+++.+
T Consensus 179 gGqkqRvaiAraL~~~p~i--LLLDEPtsgLD~~~~~~l~~~L 219 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEI--LIFDEPTAGLDPKGEHEMMQLI 219 (320)
T ss_pred HHHHHHHHHHHHHHcCCCE--EEEECCccCCCHHHHHHHHHHH
Confidence 999999 999999999998 9999999999998877765543
No 142
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=6.4e-16 Score=138.67 Aligned_cols=141 Identities=18% Similarity=0.163 Sum_probs=99.6
Q ss_pred eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675 82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------- 144 (279)
Q Consensus 82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------- 144 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|++|.|++||.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-KPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHH
Confidence 567777777742 238999999999999999999999999999999 89999999999887421
Q ss_pred -cccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhC
Q 023675 145 -LNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 145 -~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~ 196 (279)
....++|.+++. .+.+.. ...+..++...++. ..+..+|+++++| .++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 122334333321 111100 01112223333442 1345688899998 8999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ +++|||+..++......+.+.+
T Consensus 162 ~~p~i--lllDEPt~~LD~~~~~~l~~~l 188 (286)
T PRK13646 162 MNPDI--IVLDEPTAGLDPQSKRQVMRLL 188 (286)
T ss_pred hCCCE--EEEECCcccCCHHHHHHHHHHH
Confidence 99998 9999999999998877755443
No 143
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.67 E-value=4.8e-16 Score=137.37 Aligned_cols=142 Identities=20% Similarity=0.128 Sum_probs=98.5
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-----cccc------
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHG------ 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-----i~~~------ 144 (279)
.+++++++++|.+ ..||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.+ +...
T Consensus 6 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCccccccccccCCHHHHH
Confidence 4778888888764 349999999999999999999999999999999 8999999999987 4210
Q ss_pred --cccCCCCCcccH----------HHHH------------HH-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHH
Q 023675 145 --LNRDLSFKAEDR----------VENI------------RR-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACR 193 (279)
Q Consensus 145 --~~~~~~~~~~~~----------~~~~------------~~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar 193 (279)
....++|.+++. .+.+ .. ......++...++. ..+..+|+++++| .+++
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 011122222111 0000 00 01111222233332 2345688899998 8999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++.+|++ +++|||+..++......+.+.+
T Consensus 165 al~~~p~l--lllDEPt~~LD~~~~~~l~~~l 194 (258)
T PRK11701 165 NLVTHPRL--VFMDEPTGGLDVSVQARLLDLL 194 (258)
T ss_pred HHhcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence 99999998 9999999999988877665543
No 144
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.67 E-value=1.8e-16 Score=131.58 Aligned_cols=140 Identities=21% Similarity=0.245 Sum_probs=92.3
Q ss_pred eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc----------
Q 023675 82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---------- 146 (279)
Q Consensus 82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~---------- 146 (279)
|++++++-+|. +..|+.+++|.+.+|+||||+|||||+..++|++ ..++|.|++||.++...-+
T Consensus 2 I~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecccCChHHHHHHHHHH
Confidence 34555555555 3559999999999999999999999999999999 8999999999999853210
Q ss_pred ------------------cCCCCCcccHH-HHHHHHHHHHHHHHhCCcc-hhcccCChHHHHHH-HHHHhCCCCCccEEE
Q 023675 147 ------------------RDLSFKAEDRV-ENIRRIGEVAKLFADAGVI-CIACLISPYRKDRD-ACRSMLPEGDFIEVF 205 (279)
Q Consensus 147 ------------------~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~-~i~~~~~~~~~~r~-~ar~l~~~~~~i~i~ 205 (279)
+.+.|+..... +-...+.+....+.-..+. ...+.++++++||+ +|.-++.+.++ |+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdy--vl 158 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDY--VL 158 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcE--EE
Confidence 11122211111 1111122211111111111 24567899999995 45566677788 99
Q ss_pred EeCCccchhccChhhHHHH
Q 023675 206 MDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~~ 224 (279)
||||+..|+-.-.-.+++.
T Consensus 159 LDEPLNNLDmkHsv~iMk~ 177 (252)
T COG4604 159 LDEPLNNLDMKHSVQIMKI 177 (252)
T ss_pred ecCcccccchHHHHHHHHH
Confidence 9999999988766554443
No 145
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.4e-15 Score=130.30 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=95.8
Q ss_pred EEeecceeecC---CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCcc---
Q 023675 83 LWHKNSVDKRD---RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKAE--- 154 (279)
Q Consensus 83 ~~~~~~~~~~~---~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~~--- 154 (279)
++++++++|.. +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++.... ...++|.++
T Consensus 2 ~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~ 80 (211)
T cd03298 2 RLDKIRFSYGEQPMHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVLINGVDVTAAPPADRPVSMLFQENN 80 (211)
T ss_pred EEEeEEEEeCCEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEcCcCCHhHccEEEEecccc
Confidence 45566666643 458999999999999999999999999999999 899999999998763210 001111111
Q ss_pred -----cHHHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 155 -----DRVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 155 -----~~~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
...+.+. .-..+...+...++.. ....+|+++++| .++++++.+|++ +++|||++.
T Consensus 81 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~l--lllDEP~~~ 158 (211)
T cd03298 81 LFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPV--LLLDEPFAA 158 (211)
T ss_pred cCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCccc
Confidence 1111110 0011222233333322 344688889888 999999999998 999999999
Q ss_pred hhccChhhHHHHHh
Q 023675 213 CEARDPKGLYKLAR 226 (279)
Q Consensus 213 l~~R~~~~l~~~~~ 226 (279)
++....+.+.+.+.
T Consensus 159 LD~~~~~~l~~~l~ 172 (211)
T cd03298 159 LDPALRAEMLDLVL 172 (211)
T ss_pred CCHHHHHHHHHHHH
Confidence 99988777655443
No 146
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.66 E-value=5e-16 Score=133.96 Aligned_cols=143 Identities=20% Similarity=0.192 Sum_probs=96.7
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....+
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSILIDGVDISKIGLHDLRSRI 80 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEEECCEEhHhCCHHHHhhhE
Confidence 4677788777753 238999999999999999999999999999999 89999999999876320 11111
Q ss_pred CCCccc-------HHHHHHH-----HHHHHHHHHhCCc---------------chhcccCChHHHHH-HHHHHhCCCCCc
Q 023675 150 SFKAED-------RVENIRR-----IGEVAKLFADAGV---------------ICIACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 150 ~~~~~~-------~~~~~~~-----v~~~~~~~~~~~~---------------~~i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
+|.+++ ..+.+.. ...+...+...++ ......+|+++++| .++++++.+|++
T Consensus 81 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 81 SIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 111111 0110000 0000111111111 11344678888888 999999999998
Q ss_pred cEEEEeCCccchhccChhhHHHHHh
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++|||+..++....+.+++.+.
T Consensus 161 --lllDEP~~~LD~~~~~~l~~~l~ 183 (221)
T cd03244 161 --LVLDEATASVDPETDALIQKTIR 183 (221)
T ss_pred --EEEeCccccCCHHHHHHHHHHHH
Confidence 99999999999988777666554
No 147
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=7.3e-16 Score=136.95 Aligned_cols=145 Identities=20% Similarity=0.165 Sum_probs=100.4
Q ss_pred CCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------
Q 023675 79 STNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------ 143 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------ 143 (279)
...|+++++++.|.++ .||++++|++++|+|+||||||||+++|+|.+.. |.+|.|+++|.++..
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 3568899999988643 3899999999999999999999999999999842 489999999987632
Q ss_pred ccccCCCCCcc-------cHHHHHHH--------------HHHHHHHHHhCCcc--------hhcccCChHHHHH-HHHH
Q 023675 144 GLNRDLSFKAE-------DRVENIRR--------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACR 193 (279)
Q Consensus 144 ~~~~~~~~~~~-------~~~~~~~~--------------v~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar 193 (279)
.....++|.++ ...+.+.. ...+...+...++. ..+..+|+++++| .+++
T Consensus 97 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 176 (267)
T PRK14235 97 ELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIAR 176 (267)
T ss_pred HHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 01111222111 11111110 01112223333331 1244588899998 9999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++.+|++ ++||||+..++....+.+++.+
T Consensus 177 al~~~p~l--llLDEPt~~LD~~~~~~l~~~L 206 (267)
T PRK14235 177 AIAVSPEV--ILMDEPCSALDPIATAKVEELI 206 (267)
T ss_pred HHHcCCCE--EEEeCCCcCCCHHHHHHHHHHH
Confidence 99999998 9999999999988877655543
No 148
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.66 E-value=1.8e-16 Score=133.00 Aligned_cols=129 Identities=25% Similarity=0.215 Sum_probs=84.9
Q ss_pred cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------------ccCCCCCcccHH-
Q 023675 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------------NRDLSFKAEDRV- 157 (279)
Q Consensus 92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-------------~~~~~~~~~~~~- 157 (279)
.++.+|++++||+++|+||||+|||||++.|+|.+ .|++|.+.++|.++..+- +..+.|.+.-+.
T Consensus 17 l~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel-~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eV 95 (259)
T COG4559 17 LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEV 95 (259)
T ss_pred ccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc-CCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHH
Confidence 34569999999999999999999999999999999 899999999999885321 111222221110
Q ss_pred ------------H--HHHHHHHHHHHHHhCCcchh----cccCChHHHHH-HHHHHhCCCCCcc----EEEEeCCccchh
Q 023675 158 ------------E--NIRRIGEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFI----EVFMDVPLQVCE 214 (279)
Q Consensus 158 ------------~--~~~~v~~~~~~~~~~~~~~i----~~~~~~~~~~r-~~ar~l~~~~~~i----~i~ld~p~~~l~ 214 (279)
+ .-.++. .+.+...++..+ ...+|+++++| ..+|-++.-+..+ .++||||++.++
T Consensus 96 V~mGr~p~~~g~~~~e~~~i~--~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLD 173 (259)
T COG4559 96 VQMGRIPHRSGREPEEDERIA--AQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173 (259)
T ss_pred HHhcccccccCCCchhhHHHH--HHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccc
Confidence 0 001111 111222222221 22478899999 7888776543222 489999999999
Q ss_pred ccChhhHHH
Q 023675 215 ARDPKGLYK 223 (279)
Q Consensus 215 ~R~~~~l~~ 223 (279)
-.-+...++
T Consensus 174 i~HQ~~tl~ 182 (259)
T COG4559 174 IAHQHHTLR 182 (259)
T ss_pred hHHHHHHHH
Confidence 887665443
No 149
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.66 E-value=6.8e-16 Score=136.30 Aligned_cols=142 Identities=19% Similarity=0.209 Sum_probs=99.7
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----------
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------- 143 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----------- 143 (279)
+.++++++++.|.. ..+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEcccccccccccccc
Confidence 45788888888864 349999999999999999999999999999999 8999999999987631
Q ss_pred ------ccccCCCCCcc--------cHHHHHHH-------------HHHHHHHHHhCCcch-----hcccCChHHHHH-H
Q 023675 144 ------GLNRDLSFKAE--------DRVENIRR-------------IGEVAKLFADAGVIC-----IACLISPYRKDR-D 190 (279)
Q Consensus 144 ------~~~~~~~~~~~--------~~~~~~~~-------------v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~ 190 (279)
.....++|.++ ...+.+.. -..+...+...++.. ....+++++++| .
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~ 162 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVS 162 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence 00111222111 11111110 011222233333322 234588889888 8
Q ss_pred HHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++++++.+|++ +++|||+..++....+.+.+.
T Consensus 163 laral~~~p~l--lllDEPt~~LD~~~~~~l~~~ 194 (257)
T PRK10619 163 IARALAMEPEV--LLFDEPTSALDPELVGEVLRI 194 (257)
T ss_pred HHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence 99999999998 999999999999887776554
No 150
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.66 E-value=8.5e-16 Score=135.26 Aligned_cols=141 Identities=13% Similarity=0.139 Sum_probs=95.9
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------------
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------------ 144 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------------ 144 (279)
|+++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccccccch
Confidence 356677777754 348999999999999999999999999999999 89999999999876311
Q ss_pred -----cccCCCCCcc--------cHHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHH
Q 023675 145 -----LNRDLSFKAE--------DRVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACR 193 (279)
Q Consensus 145 -----~~~~~~~~~~--------~~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar 193 (279)
....+++.++ ...+.+.. ...+...+...++.. ....+++++++| .+++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 0111111111 11111110 011122233333322 234578888888 9999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++.+|++ +++|||+..++......+++.+
T Consensus 160 al~~~p~l--lllDEP~~~LD~~~~~~l~~~l 189 (252)
T TIGR03005 160 ALAMRPKV--MLFDEVTSALDPELVGEVLNVI 189 (252)
T ss_pred HHHcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 99999988 9999999999988776655433
No 151
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=7.3e-16 Score=137.83 Aligned_cols=142 Identities=19% Similarity=0.195 Sum_probs=100.3
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
.++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....+
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~-~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHhhhe
Confidence 3778888888853 238999999999999999999999999999999 89999999999887421 11122
Q ss_pred CCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 150 SFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 150 ~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
+|.+++. .+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~l-- 161 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDI-- 161 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence 3222221 111110 001122222223322 344578888888 999999999998
Q ss_pred EEEeCCccchhccChhhHHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++|||+..++......+++.+
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l 183 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETV 183 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHH
Confidence 9999999999998877766544
No 152
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.1e-15 Score=134.55 Aligned_cols=145 Identities=22% Similarity=0.205 Sum_probs=98.6
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--c--CCccEEEEcCeeccc------c
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------G 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~--~~~G~i~ldgd~i~~------~ 144 (279)
..+++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|++. . |++|.|+++|.++.. .
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 34788888888864 3499999999999999999999999999999863 1 579999999987632 0
Q ss_pred cccCCCCCcc-------cHHHHHHH-------------HHHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAE-------DRVENIRR-------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~-------------v~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l 195 (279)
....++|.++ ...+.+.. ..++...+...++. .....+|+++++| .+++++
T Consensus 85 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 85 LRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 1111222211 11111110 01111222222321 1234588899988 899999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+.+|++ +++|||+..++......+.+.++
T Consensus 165 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l~ 193 (253)
T PRK14242 165 AVEPEV--LLMDEPASALDPIATQKIEELIH 193 (253)
T ss_pred hcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 999988 99999999999887776655443
No 153
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.66 E-value=1.2e-15 Score=132.29 Aligned_cols=142 Identities=20% Similarity=0.201 Sum_probs=97.8
Q ss_pred CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675 81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------- 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------- 144 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeeEEECCEEcccCCHHHHHH
Confidence 4677787777753 238999999999999999999999999999999 89999999999876321
Q ss_pred -cccCCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675 145 -LNRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 145 -~~~~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
....++|.++. ..+.+.. ..++...+...++.. ....+|+++++| .++++++.+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~ 164 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGR 164 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 00112211111 1111100 011222223333322 344588899988 899999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
|++ ++||||+..++......+.+.+
T Consensus 165 p~l--lllDEPt~~LD~~~~~~l~~~l 189 (228)
T PRK10584 165 PDV--LFADEPTGNLDRQTGDKIADLL 189 (228)
T ss_pred CCE--EEEeCCCCCCCHHHHHHHHHHH
Confidence 998 9999999999988777655544
No 154
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.66 E-value=6e-16 Score=135.96 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=96.9
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------------
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------------ 144 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------------ 144 (279)
+++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 4 IEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-QPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccccccchhhHHHH
Confidence 567777777754 348999999999999999999999999999999 89999999999876311
Q ss_pred cccCCCCCcc--------cHHHHHHH------------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675 145 LNRDLSFKAE--------DRVENIRR------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 145 ~~~~~~~~~~--------~~~~~~~~------------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
....++|.++ ...+.+.. . ..+..++...++.. ....+|+++++| .++++++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 1111222111 11111110 0 11122233333322 344578889888 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
|++ +++|||++.++......+++.
T Consensus 163 p~l--llLDEPt~~LD~~~~~~l~~~ 186 (250)
T PRK11264 163 PEV--ILFDEPTSALDPELVGEVLNT 186 (250)
T ss_pred CCE--EEEeCCCccCCHHHHHHHHHH
Confidence 998 999999999998877765543
No 155
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.66 E-value=5.4e-16 Score=140.14 Aligned_cols=141 Identities=15% Similarity=0.164 Sum_probs=97.0
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKA 153 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~ 153 (279)
+++++++++|.+ +.||++++|++++|+|+||||||||+++|+|++ .|++|.|.++|.++... ....++|.+
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-PPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccChHHHHhceEEec
Confidence 456666666653 449999999999999999999999999999999 89999999999877421 111122211
Q ss_pred cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
+. ..+.+.. ......++...++.. .+..+|+++++| .++++++.+|++ ++|||
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--liLDE 159 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKV--LILDE 159 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 11 1111110 011122222333322 344578888888 899999999998 99999
Q ss_pred CccchhccChhhHHHHH
Q 023675 209 PLQVCEARDPKGLYKLA 225 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~~ 225 (279)
|+..++....+.+.+.+
T Consensus 160 Pt~gLD~~~~~~l~~~l 176 (301)
T TIGR03522 160 PTTGLDPNQLVEIRNVI 176 (301)
T ss_pred CcccCCHHHHHHHHHHH
Confidence 99999988777655443
No 156
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.5e-15 Score=132.90 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=97.5
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK 152 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~ 152 (279)
+++++++++|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++... ....++|.
T Consensus 4 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-DPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 567777777753 349999999999999999999999999999999 89999999999876321 11112222
Q ss_pred ccc-------HHHHHHH--------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 153 AED-------RVENIRR--------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 153 ~~~-------~~~~~~~--------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
+++ ..+.+.. ..++..++...++. .....+|+++++| .++++++.+|++ +++|||+.
T Consensus 83 ~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~ 160 (241)
T PRK14250 83 FQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEV--LLLDEPTS 160 (241)
T ss_pred ecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence 221 1111110 01112222233332 1234578889888 899999999998 99999999
Q ss_pred chhccChhhHHHHH
Q 023675 212 VCEARDPKGLYKLA 225 (279)
Q Consensus 212 ~l~~R~~~~l~~~~ 225 (279)
.++....+.+++.+
T Consensus 161 ~LD~~~~~~l~~~l 174 (241)
T PRK14250 161 ALDPTSTEIIEELI 174 (241)
T ss_pred cCCHHHHHHHHHHH
Confidence 99998777655543
No 157
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=6.5e-16 Score=138.16 Aligned_cols=140 Identities=16% Similarity=0.174 Sum_probs=98.1
Q ss_pred eEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 82 ILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 82 i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....+
T Consensus 5 l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-EAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred EEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECCcCcHHHHHhhc
Confidence 677777777752 338999999999999999999999999999999 89999999999887421 11122
Q ss_pred CCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 150 SFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 150 ~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
+|.+++. .+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l-- 161 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI-- 161 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence 3322221 111110 001112222223322 334678899888 999999999998
Q ss_pred EEEeCCccchhccChhhHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+++|||++.++....+.+++.
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~ 182 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKT 182 (279)
T ss_pred EEEECCcccCCHHHHHHHHHH
Confidence 999999999999877765543
No 158
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.66 E-value=2.2e-15 Score=128.92 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=95.7
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCCCCc--
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKA-- 153 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~~~~-- 153 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.+
T Consensus 3 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 3 LEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-PPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 456677666643 449999999999999999999999999999999 89999999999875310 111111111
Q ss_pred ------ccHHHHHHH--------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675 154 ------EDRVENIRR--------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (279)
Q Consensus 154 ------~~~~~~~~~--------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~ 214 (279)
....+.+.. -..+...+...++.. ....+++++++| .++++++.+|++ +++|||+..++
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD 159 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPI--WILDEPTAALD 159 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCC
Confidence 011111110 011222233333322 233578888888 999999999998 99999999999
Q ss_pred ccChhhHHHHH
Q 023675 215 ARDPKGLYKLA 225 (279)
Q Consensus 215 ~R~~~~l~~~~ 225 (279)
......+.+.+
T Consensus 160 ~~~~~~l~~~l 170 (207)
T PRK13539 160 AAAVALFAELI 170 (207)
T ss_pred HHHHHHHHHHH
Confidence 88777655443
No 159
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.66 E-value=1.5e-16 Score=155.56 Aligned_cols=144 Identities=16% Similarity=0.184 Sum_probs=101.2
Q ss_pred CCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675 80 TNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD 148 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~ 148 (279)
+.|++++++|+|+.. .||++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++... +...
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i~~~g~~~~~~~~~~~~~~ 390 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDIRFHDIPLTKLQLDSWRSR 390 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEHhhCCHHHHHhh
Confidence 469999999999642 28999999999999999999999999999999 89999999999887421 1111
Q ss_pred CCCCccc-------HH------------HHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 149 LSFKAED-------RV------------ENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 149 ~~~~~~~-------~~------------~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
+++.+++ .+ +.+....+.+. ... ..|+. ..+..+|+++++| .++|+++++|
T Consensus 391 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~ 470 (569)
T PRK10789 391 LAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNA 470 (569)
T ss_pred eEEEccCCeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 1111110 01 11111111110 011 11221 2334588999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ +++|||++.++....+.+++.+.
T Consensus 471 ~i--lllDEpts~LD~~~~~~i~~~l~ 495 (569)
T PRK10789 471 EI--LILDDALSAVDGRTEHQILHNLR 495 (569)
T ss_pred CE--EEEECccccCCHHHHHHHHHHHH
Confidence 98 99999999999998877665544
No 160
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.66 E-value=1.3e-15 Score=130.84 Aligned_cols=140 Identities=17% Similarity=0.183 Sum_probs=95.4
Q ss_pred EEeecceeec---CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc---
Q 023675 83 LWHKNSVDKR---DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE--- 154 (279)
Q Consensus 83 ~~~~~~~~~~---~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~--- 154 (279)
+++++++.|. ...||++.+|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++... ....++|.++
T Consensus 2 ~~~~l~~~~~~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~ 80 (213)
T TIGR01277 2 ALDKVRYEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIKVNDQSHTGLAPYQRPVSMLFQENN 80 (213)
T ss_pred eEEeeeEEeCCcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEcccCChhccceEEEeccCc
Confidence 4556666664 2458999999999999999999999999999999 89999999999876421 1111111111
Q ss_pred -----cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 155 -----DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 155 -----~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
...+.+.. -..+...+...++.. ....+|+++++| .++++++.+|++ +++|||+..
T Consensus 81 ~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~ 158 (213)
T TIGR01277 81 LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPI--LLLDEPFSA 158 (213)
T ss_pred cCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCCcc
Confidence 11111110 011122233333322 234578888888 899999999988 999999999
Q ss_pred hhccChhhHHHHH
Q 023675 213 CEARDPKGLYKLA 225 (279)
Q Consensus 213 l~~R~~~~l~~~~ 225 (279)
++......+++.+
T Consensus 159 LD~~~~~~~~~~l 171 (213)
T TIGR01277 159 LDPLLREEMLALV 171 (213)
T ss_pred CCHHHHHHHHHHH
Confidence 9998877655543
No 161
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.66 E-value=1.2e-15 Score=130.03 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=90.2
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc--------ccccCCCCCccc--------H
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH--------GLNRDLSFKAED--------R 156 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~--------~~~~~~~~~~~~--------~ 156 (279)
+..||.+++|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++.. .....++|.+++ .
T Consensus 15 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 93 (206)
T TIGR03608 15 DDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENETV 93 (206)
T ss_pred eceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhccCCcH
Confidence 3559999999999999999999999999999999 8999999999988421 011112221111 1
Q ss_pred HHHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675 157 VENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 157 ~~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
.+.+.. ...+...+...++. .....+|+++++| .++++++.+|++ +++|||++.++....+
T Consensus 94 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~l--lllDEPt~~LD~~~~~ 171 (206)
T TIGR03608 94 EENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPL--ILADEPTGSLDPKNRD 171 (206)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcCCCCHHHHH
Confidence 111110 11122223333332 2344578888888 899999999998 9999999999988777
Q ss_pred hHHHHHh
Q 023675 220 GLYKLAR 226 (279)
Q Consensus 220 ~l~~~~~ 226 (279)
.+.+.++
T Consensus 172 ~l~~~l~ 178 (206)
T TIGR03608 172 EVLDLLL 178 (206)
T ss_pred HHHHHHH
Confidence 6655443
No 162
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.66 E-value=1.3e-15 Score=131.76 Aligned_cols=140 Identities=19% Similarity=0.142 Sum_probs=94.3
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc---
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE--- 154 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~--- 154 (279)
++++++++|.. ..+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++.......+++.++
T Consensus 2 ~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred EEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEeccccccccEEEEcCCCC
Confidence 34555555543 348999999999999999999999999999999 899999999998753110011111111
Q ss_pred -----cHHHHHHHH--------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 155 -----DRVENIRRI--------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 155 -----~~~~~~~~v--------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
...+.+... ..+..++...++.. ....+|+++++| .++++++.+|++ +++|||+..++..
T Consensus 81 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~l--lllDEP~~~LD~~ 158 (223)
T TIGR03740 81 LYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKL--LILDEPTNGLDPI 158 (223)
T ss_pred ccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCE--EEECCCccCCCHH
Confidence 111111110 11222233333322 234578888888 899999999988 9999999999998
Q ss_pred ChhhHHHHH
Q 023675 217 DPKGLYKLA 225 (279)
Q Consensus 217 ~~~~l~~~~ 225 (279)
..+.+.+.+
T Consensus 159 ~~~~l~~~L 167 (223)
T TIGR03740 159 GIQELRELI 167 (223)
T ss_pred HHHHHHHHH
Confidence 877655543
No 163
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.66 E-value=7.4e-16 Score=137.04 Aligned_cols=142 Identities=20% Similarity=0.219 Sum_probs=98.4
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------ccc
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNR 147 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~ 147 (279)
..++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ...
T Consensus 6 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI-APDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEccccChhhHHHHhh
Confidence 34788888888864 349999999999999999999999999999999 89999999999876311 011
Q ss_pred CCCCCcc--------cHHHHHHHH-------------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCc
Q 023675 148 DLSFKAE--------DRVENIRRI-------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 148 ~~~~~~~--------~~~~~~~~v-------------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
.++|.++ ...+.+... ..+..++...++.. ....+|+++++| .++++++.+|++
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l 164 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDL 164 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 1121111 111111100 01111222333321 234588899988 899999999988
Q ss_pred cEEEEeCCccchhccChhhHHHH
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||+..++....+.+.+.
T Consensus 165 --llLDEPt~~LD~~~~~~l~~~ 185 (269)
T PRK11831 165 --IMFDEPFVGQDPITMGVLVKL 185 (269)
T ss_pred --EEEcCCCccCCHHHHHHHHHH
Confidence 999999999999887765543
No 164
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.66 E-value=1.2e-16 Score=148.58 Aligned_cols=145 Identities=26% Similarity=0.272 Sum_probs=104.9
Q ss_pred CCCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675 78 KSTNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN 146 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~ 146 (279)
..+.+.++++.+.-+. +.||.+++|+.++|+||||||||||+++|.|.+ .|.+|.|++||-+++.+ +.
T Consensus 331 P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~VRLDga~l~qWd~e~lG 409 (580)
T COG4618 331 PQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSVRLDGADLRQWDREQLG 409 (580)
T ss_pred CCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcEEecchhhhcCCHHHhc
Confidence 4567888888775543 339999999999999999999999999999999 89999999999998754 23
Q ss_pred cCCCCCcccH-------HHHHHHHH---------HHHHH------HH--hCCcch----hcccCChHHHHH-HHHHHhCC
Q 023675 147 RDLSFKAEDR-------VENIRRIG---------EVAKL------FA--DAGVIC----IACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 147 ~~~~~~~~~~-------~~~~~~v~---------~~~~~------~~--~~~~~~----i~~~~~~~~~~r-~~ar~l~~ 197 (279)
.-++|-+++. .+++.+.. +.+.+ .. ..|+.. -+..+|++|+|| .++|++..
T Consensus 410 ~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG 489 (580)
T COG4618 410 RHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYG 489 (580)
T ss_pred cccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcC
Confidence 3456655533 23333321 11111 00 112211 234578999999 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|.+ +.||||-+.++.--.+.|.+.+
T Consensus 490 ~P~l--vVLDEPNsNLD~~GE~AL~~Ai 515 (580)
T COG4618 490 DPFL--VVLDEPNSNLDSEGEAALAAAI 515 (580)
T ss_pred CCcE--EEecCCCCCcchhHHHHHHHHH
Confidence 9877 9999999999988776665543
No 165
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.66 E-value=1.6e-16 Score=154.46 Aligned_cols=144 Identities=20% Similarity=0.224 Sum_probs=101.1
Q ss_pred CCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675 80 TNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD 148 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~ 148 (279)
+.++++|++|+|+. +.||++++|+.++|+|+||||||||+++|+|++ .|.+|.|.+||.++... +...
T Consensus 315 ~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~i~~~~~~~~~~~ 393 (544)
T TIGR01842 315 GHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSGSVRLDGADLKQWDRETFGKH 393 (544)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEehhhCCHHHHhhh
Confidence 46999999999964 228999999999999999999999999999999 89999999999887421 1111
Q ss_pred CCCCcc-------cHHHH------------HHHHHH---HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 149 LSFKAE-------DRVEN------------IRRIGE---VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 149 ~~~~~~-------~~~~~------------~~~v~~---~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
+++.++ ..++. +....+ ....+.. .|.. ..+..+|+++++| .++|+++.+|
T Consensus 394 i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~ 473 (544)
T TIGR01842 394 IGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDP 473 (544)
T ss_pred eEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCC
Confidence 111111 00111 111001 1111111 1222 2345689999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ +++|||++.++....+.+.+.+.
T Consensus 474 ~i--lilDEpts~LD~~~~~~i~~~l~ 498 (544)
T TIGR01842 474 KL--VVLDEPNSNLDEEGEQALANAIK 498 (544)
T ss_pred CE--EEEeCCccccCHHHHHHHHHHHH
Confidence 98 99999999999988777665443
No 166
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2.1e-15 Score=133.47 Aligned_cols=147 Identities=19% Similarity=0.164 Sum_probs=100.2
Q ss_pred CCCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc-----
Q 023675 78 KSTNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH----- 143 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~----- 143 (279)
..+.++++++++.|.++ .||++++|++++|+|+||||||||+++|+|.+.. |.+|.|.++|.++..
T Consensus 10 ~~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 10 APSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CCceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 34568889998888653 3899999999999999999999999999999831 579999999987631
Q ss_pred -ccccCCCCCccc-------HHHHHHH-------------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHH
Q 023675 144 -GLNRDLSFKAED-------RVENIRR-------------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACR 193 (279)
Q Consensus 144 -~~~~~~~~~~~~-------~~~~~~~-------------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar 193 (279)
.+...++|.+++ ..+.+.. ...+...+...++ ......+|+++++| .+++
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 169 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIAR 169 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 111112221111 1111100 0111122222232 11234588899888 9999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++.+|++ +++|||+..++....+.+++.++
T Consensus 170 al~~~p~l--llLDEPt~~LD~~~~~~l~~~L~ 200 (260)
T PRK10744 170 GIAIRPEV--LLLDEPCSALDPISTGRIEELIT 200 (260)
T ss_pred HHHCCCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence 99999998 99999999999987776655443
No 167
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.65 E-value=9.5e-16 Score=134.01 Aligned_cols=141 Identities=20% Similarity=0.093 Sum_probs=94.7
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeecccc-----cccCCCC
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHG-----LNRDLSF 151 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~-----~~~~~~~ 151 (279)
++++++++|.+ +.||++++|++++|+|+||||||||+++|+|++. .|.+|.|+++|.++... ....++|
T Consensus 2 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (243)
T TIGR01978 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFL 81 (243)
T ss_pred eEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEe
Confidence 45666666653 4499999999999999999999999999999952 68999999999876321 1111222
Q ss_pred Cccc--------HHHHHHH-------------------HHHHHHHHHhCCcc-----hhcc-cCChHHHHH-HHHHHhCC
Q 023675 152 KAED--------RVENIRR-------------------IGEVAKLFADAGVI-----CIAC-LISPYRKDR-DACRSMLP 197 (279)
Q Consensus 152 ~~~~--------~~~~~~~-------------------v~~~~~~~~~~~~~-----~i~~-~~~~~~~~r-~~ar~l~~ 197 (279)
.+++ ..+.+.. ...+...+...++. .... .+|+++++| .++++++.
T Consensus 82 v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~ 161 (243)
T TIGR01978 82 AFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL 161 (243)
T ss_pred eeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhc
Confidence 1111 0110000 01112222223332 1222 388899988 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|++ +++|||+..++....+.+++.+
T Consensus 162 ~p~l--lllDEPt~~LD~~~~~~l~~~l 187 (243)
T TIGR01978 162 EPKL--AILDEIDSGLDIDALKIVAEGI 187 (243)
T ss_pred CCCE--EEecCCcccCCHHHHHHHHHHH
Confidence 9998 9999999999998877655543
No 168
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.65 E-value=9.2e-16 Score=144.59 Aligned_cols=141 Identities=24% Similarity=0.295 Sum_probs=103.2
Q ss_pred CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----c-------cc
Q 023675 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----L-------NR 147 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~-------~~ 147 (279)
.+|+..+..+.+.++.+|++.+|++++|+|.||+|||||.|.|+|.+ .|++|+|++||+.+... . ..
T Consensus 12 ~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~Q 90 (500)
T COG1129 12 RGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-PPDSGEILIDGKPVAFSSPRDALAAGIATVHQ 90 (500)
T ss_pred ecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-cCCCceEEECCEEccCCCHHHHHhCCcEEEee
Confidence 45666677777778889999999999999999999999999999999 89999999999987421 0 11
Q ss_pred CCCCCc--------------------ccHHHHHHHHHHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 148 DLSFKA--------------------EDRVENIRRIGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 148 ~~~~~~--------------------~~~~~~~~~v~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
++.+.+ -++++..++ ...++...+. ...+..++..++|. +++|++..++++
T Consensus 91 El~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~---A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arl- 166 (500)
T COG1129 91 ELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRR---ARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARV- 166 (500)
T ss_pred chhccCCccHHHHhhcccccccCCCccCHHHHHHH---HHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 111111 111222222 2223333332 33455678888887 999999999888
Q ss_pred EEEEeCCccchhccChhhHHHHHh
Q 023675 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++||||++.|..+..+.|++.++
T Consensus 167 -lIlDEPTaaLt~~E~~~Lf~~ir 189 (500)
T COG1129 167 -LILDEPTAALTVKETERLFDLIR 189 (500)
T ss_pred -EEEcCCcccCCHHHHHHHHHHHH
Confidence 99999999999999998776544
No 169
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.65 E-value=2.7e-15 Score=129.97 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=97.7
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF 151 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~ 151 (279)
.++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|
T Consensus 7 ~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 7 LLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred eEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 4778888887754 349999999999999999999999999999998 89999999999876321 1111121
Q ss_pred Ccc-------cHHHHHHH----------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 152 KAE-------DRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 152 ~~~-------~~~~~~~~----------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
.++ ...+.+.. .......+...++. ..+..+|+++++| .++++++.+|++ +++||
T Consensus 86 ~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDE 163 (225)
T PRK10247 86 CAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKV--LLLDE 163 (225)
T ss_pred EecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeC
Confidence 111 11111110 01112223333332 1234578888888 999999999998 99999
Q ss_pred CccchhccChhhHHHH
Q 023675 209 PLQVCEARDPKGLYKL 224 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~ 224 (279)
|+..++....+.+.+.
T Consensus 164 Pt~~LD~~~~~~l~~~ 179 (225)
T PRK10247 164 ITSALDESNKHNVNEI 179 (225)
T ss_pred CcccCCHHHHHHHHHH
Confidence 9999998877665543
No 170
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.2e-15 Score=135.62 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=99.5
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....+
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-KVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhhe
Confidence 4788888888853 238999999999999999999999999999999 89999999999876321 11122
Q ss_pred CCCcccH---------HHHHH-----------H-HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 150 SFKAEDR---------VENIR-----------R-IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 150 ~~~~~~~---------~~~~~-----------~-v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
+|.+++. ...+. . ...+..++...++.. ....+|+++++| .++++++.+|++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-- 163 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSV-- 163 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence 3222221 01000 0 011112222233322 234578888888 999999999998
Q ss_pred EEEeCCccchhccChhhHHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++|||+..++....+.+++.+
T Consensus 164 llLDEPt~~LD~~~~~~l~~~L 185 (269)
T PRK13648 164 IILDEATSMLDPDARQNLLDLV 185 (269)
T ss_pred EEEeCCcccCCHHHHHHHHHHH
Confidence 9999999999998877765543
No 171
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.65 E-value=1.5e-15 Score=132.83 Aligned_cols=142 Identities=15% Similarity=0.210 Sum_probs=96.7
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~ 151 (279)
++++++++.|.. ..||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|
T Consensus 3 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 3 LYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT-RPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 456666666643 349999999999999999999999999999999 89999999999876321 0111222
Q ss_pred Ccc--------cHHHHHHH--------------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675 152 KAE--------DRVENIRR--------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 152 ~~~--------~~~~~~~~--------------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.++ ...+.+.. ...+...+...++.. .+..+|+++++| .++++++.+
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 111 11111110 011122222223321 334578888888 899999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHh
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
|++ +++|||+..++....+.+++.++
T Consensus 162 p~~--lllDEPt~~LD~~~~~~l~~~l~ 187 (242)
T TIGR03411 162 PKL--LLLDEPVAGMTDEETEKTAELLK 187 (242)
T ss_pred CCE--EEecCCccCCCHHHHHHHHHHHH
Confidence 998 99999999999988777655433
No 172
>PLN03130 ABC transporter C family member; Provisional
Probab=99.65 E-value=1.5e-16 Score=170.24 Aligned_cols=145 Identities=17% Similarity=0.165 Sum_probs=103.0
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.|+|+|++|+|..+ .||++++|+.++|||++|||||||+++|.|++ +|.+|.|++||.++++. ++.
T Consensus 1235 ~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I~IDG~dI~~i~l~~LR~ 1313 (1622)
T PLN03130 1235 SGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRILIDGCDISKFGLMDLRK 1313 (1622)
T ss_pred CCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceEEECCEecccCCHHHHHh
Confidence 4679999999999642 28999999999999999999999999999999 89999999999998531 122
Q ss_pred CCCCCcccH-------H-----------HHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 148 DLSFKAEDR-------V-----------ENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 148 ~~~~~~~~~-------~-----------~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
.+++.+++. + +.+....+.+. ... ..|+. ..+..+|+|++|| .+||++++++
T Consensus 1314 ~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p 1393 (1622)
T PLN03130 1314 VLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRS 1393 (1622)
T ss_pred ccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCC
Confidence 222211110 1 11111111111 111 11222 2344689999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ ++|||+++.++....+.+.+.++
T Consensus 1394 ~I--LILDEATSaLD~~Te~~Iq~~I~ 1418 (1622)
T PLN03130 1394 KI--LVLDEATAAVDVRTDALIQKTIR 1418 (1622)
T ss_pred CE--EEEECCCCCCCHHHHHHHHHHHH
Confidence 88 99999999998877666655544
No 173
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=7e-16 Score=138.23 Aligned_cols=140 Identities=19% Similarity=0.182 Sum_probs=98.9
Q ss_pred CeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------ccccC
Q 023675 81 NILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRD 148 (279)
Q Consensus 81 ~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------~~~~~ 148 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++.. .+...
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-KPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCccEEEECCEECCCCcchHHHHHhh
Confidence 4788888888852 338999999999999999999999999999999 8999999999988731 11112
Q ss_pred CCCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 149 LSFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 149 ~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
++|.+++. .+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l- 162 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV- 162 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence 23222211 111100 011122223333322 344588899888 999999999998
Q ss_pred EEEEeCCccchhccChhhHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~ 223 (279)
+++|||+..++......+++
T Consensus 163 -LilDEPt~gLD~~~~~~l~~ 182 (283)
T PRK13636 163 -LVLDEPTAGLDPMGVSEIMK 182 (283)
T ss_pred -EEEeCCccCCCHHHHHHHHH
Confidence 99999999999888776544
No 174
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=8e-16 Score=137.56 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=97.0
Q ss_pred eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675 82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------- 144 (279)
Q Consensus 82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------- 144 (279)
+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccCHH
Confidence 456777777742 238999999999999999999999999999999 89999999999876421
Q ss_pred -cccCCCCCcccH---------HHHHHH-----------HH-HHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhC
Q 023675 145 -LNRDLSFKAEDR---------VENIRR-----------IG-EVAKLFADAGVI-----CIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 145 -~~~~~~~~~~~~---------~~~~~~-----------v~-~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~ 196 (279)
....++|.++.. .+.+.. .. .+..++...++. ..+..+|+++++| .++++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 111223222211 111110 00 011122223332 1234588899988 8999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ ++||||+..++....+.+++.+
T Consensus 162 ~~p~l--llLDEPt~~LD~~~~~~l~~~l 188 (280)
T PRK13649 162 MEPKI--LVLDEPTAGLDPKGRKELMTLF 188 (280)
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 99998 9999999999998877655543
No 175
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.1e-15 Score=134.34 Aligned_cols=143 Identities=20% Similarity=0.171 Sum_probs=97.2
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc----cccC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----LNRD 148 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~----~~~~ 148 (279)
++++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|.+.. |.+|.|+++|.++... ....
T Consensus 4 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14247 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRR 83 (250)
T ss_pred EEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhcc
Confidence 566777777753 44899999999999999999999999999999832 4699999999876421 1111
Q ss_pred CCCCcc--------cHHHHHHH--------------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675 149 LSFKAE--------DRVENIRR--------------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 149 ~~~~~~--------~~~~~~~~--------------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
++|.++ ...+.+.. ...+...+...++ ......+|+++++| .++++++.
T Consensus 84 i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 163 (250)
T PRK14247 84 VQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAF 163 (250)
T ss_pred EEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhc
Confidence 221111 11111110 0111222233332 12344688899988 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|++ +++|||+..++....+.+++.+.
T Consensus 164 ~p~l--llLDEP~~~LD~~~~~~l~~~l~ 190 (250)
T PRK14247 164 QPEV--LLADEPTANLDPENTAKIESLFL 190 (250)
T ss_pred CCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence 9998 99999999999988877665443
No 176
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=8.1e-16 Score=138.29 Aligned_cols=140 Identities=18% Similarity=0.162 Sum_probs=98.2
Q ss_pred eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675 82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------- 144 (279)
Q Consensus 82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------- 144 (279)
+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|++|+|.++|.++...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHH
Confidence 567777777752 238999999999999999999999999999999 89999999999877310
Q ss_pred -cccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-h----hcccCChHHHHH-HHHHHhC
Q 023675 145 -LNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSML 196 (279)
Q Consensus 145 -~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-~----i~~~~~~~~~~r-~~ar~l~ 196 (279)
....++|.+++. .+.+.. ...+...+...++. . .+..+|+++++| .++++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 111233332221 111100 01112223333442 1 345588899988 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
.+|++ +++|||+..++......+++.
T Consensus 162 ~~P~l--lllDEPt~~LD~~~~~~l~~~ 187 (290)
T PRK13634 162 MEPEV--LVLDEPTAGLDPKGRKEMMEM 187 (290)
T ss_pred cCCCE--EEEECCcccCCHHHHHHHHHH
Confidence 99998 999999999999887765543
No 177
>PLN03232 ABC transporter C family member; Provisional
Probab=99.65 E-value=1.4e-16 Score=169.98 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=102.4
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.|+++|++|+|..+ .||++++|+.++|||+||||||||+++|.|++ +|.+|.|.+||.++.+. ++.
T Consensus 1232 ~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I~IdG~di~~i~~~~lR~ 1310 (1495)
T PLN03232 1232 RGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRIMIDDCDVAKFGLTDLRR 1310 (1495)
T ss_pred CCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceEEECCEEhhhCCHHHHHh
Confidence 4679999999999532 29999999999999999999999999999999 89999999999998531 111
Q ss_pred CCCCCccc-------HH-----------HHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 148 DLSFKAED-------RV-----------ENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 148 ~~~~~~~~-------~~-----------~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
.+++.+++ .+ +.+....+.+. ... ..|+. ..+..+|+|++|| .+||++++++
T Consensus 1311 ~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~ 1390 (1495)
T PLN03232 1311 VLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRS 1390 (1495)
T ss_pred hcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 12211111 01 11111111111 111 11222 2345689999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ ++|||+++.++....+.+.+.++
T Consensus 1391 ~I--LILDEATSaLD~~Te~~Iq~~L~ 1415 (1495)
T PLN03232 1391 KI--LVLDEATASVDVRTDSLIQRTIR 1415 (1495)
T ss_pred CE--EEEECCcccCCHHHHHHHHHHHH
Confidence 88 99999999999877666655544
No 178
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.5e-15 Score=135.00 Aligned_cols=146 Identities=19% Similarity=0.223 Sum_probs=99.5
Q ss_pred CCCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccc----cCCccEEEEcCeeccc-----
Q 023675 78 KSTNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYILDGDNCRH----- 143 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~----~~~~G~i~ldgd~i~~----- 143 (279)
....++++++++.|.++ .||++++|++++|+|+||||||||+++|+|++. .|++|.|+++|.++..
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 33458899999988653 389999999999999999999999999999862 1689999999987632
Q ss_pred -ccccCCCCCcc-------cHHHHHHH------------HHH-HHHHHHhCCcc--------hhcccCChHHHHH-HHHH
Q 023675 144 -GLNRDLSFKAE-------DRVENIRR------------IGE-VAKLFADAGVI--------CIACLISPYRKDR-DACR 193 (279)
Q Consensus 144 -~~~~~~~~~~~-------~~~~~~~~------------v~~-~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar 193 (279)
.....++|.++ ...+.+.. ..+ +...+...++. ..+..+|+++++| .+++
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 11111222111 11111110 000 11122222221 1244588899888 9999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++.+|++ +++|||+..++....+.+.+.+
T Consensus 178 al~~~p~l--llLDEPt~~LD~~~~~~l~~~l 207 (268)
T PRK14248 178 TLAMKPAV--LLLDEPASALDPISNAKIEELI 207 (268)
T ss_pred HHhCCCCE--EEEcCCCcccCHHHHHHHHHHH
Confidence 99999998 9999999999988877655543
No 179
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.65 E-value=9e-16 Score=136.73 Aligned_cols=142 Identities=20% Similarity=0.264 Sum_probs=97.1
Q ss_pred CeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-cCCCCCc
Q 023675 81 NILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-~~~~~~~ 153 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++..... ..++|.+
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~i~~v~ 84 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV-RLASGKISILGQPTRQALQKNLVAYVP 84 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEhHHhhccceEEEec
Confidence 4778888888852 338999999999999999999999999999999 8999999999987531110 0011111
Q ss_pred cc----------HHHHH---------------HH-HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 154 ED----------RVENI---------------RR-IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 154 ~~----------~~~~~---------------~~-v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
++ ....+ .. -......+...++. ..+..+|+++++| .++++++.+|++
T Consensus 85 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~l- 163 (272)
T PRK15056 85 QSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQV- 163 (272)
T ss_pred cccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence 00 00000 00 00111222223332 1344578889888 999999999998
Q ss_pred EEEEeCCccchhccChhhHHHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++|||+..++....+.+.+.+
T Consensus 164 -lllDEPt~~LD~~~~~~l~~~L 185 (272)
T PRK15056 164 -ILLDEPFTGVDVKTEARIISLL 185 (272)
T ss_pred -EEEeCCCccCCHHHHHHHHHHH
Confidence 9999999999988877655543
No 180
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.65 E-value=1.7e-16 Score=155.57 Aligned_cols=144 Identities=13% Similarity=0.149 Sum_probs=101.1
Q ss_pred CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
+.++++|++|+|+++ .||++++|+.++|+|+||||||||+++|+|++ +|.+|.|++||.++.+. +...+
T Consensus 333 ~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i~~~g~~~~~~~~~~~~~~i 411 (585)
T TIGR01192 333 GAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPTVGQILIDGIDINTVTRESLRKSI 411 (585)
T ss_pred CeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 469999999999742 28999999999999999999999999999999 89999999999887421 11111
Q ss_pred CCCcc--------------------cHHHHHHHHHH--HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCCC
Q 023675 150 SFKAE--------------------DRVENIRRIGE--VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 150 ~~~~~--------------------~~~~~~~~v~~--~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
++.++ ...+....... ....... .|.. ..+..+|+|+++| .++|+++.+|+
T Consensus 412 ~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ 491 (585)
T TIGR01192 412 ATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAP 491 (585)
T ss_pred EEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 11111 00111111100 1111111 1221 2344589999999 99999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ +++|||++.++....+.+.+.+.
T Consensus 492 i--lilDEpts~LD~~~~~~i~~~l~ 515 (585)
T TIGR01192 492 I--LVLDEATSALDVETEARVKNAID 515 (585)
T ss_pred E--EEEECCccCCCHHHHHHHHHHHH
Confidence 8 99999999999988777665443
No 181
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.1e-15 Score=136.35 Aligned_cols=141 Identities=20% Similarity=0.164 Sum_probs=96.9
Q ss_pred eEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675 82 ILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS 150 (279)
Q Consensus 82 i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~ 150 (279)
+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... +...++
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-RPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEECCccccHHHHHhheE
Confidence 456677777742 338999999999999999999999999999999 89999999999887421 111222
Q ss_pred CCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 151 FKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 151 ~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
|.+++. .+.+.. ...+..++...++.. .+..+|+++++| .++++++.+|++ +
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l--l 158 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC--L 158 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE--E
Confidence 222211 111100 011112222233322 344578889888 899999999998 9
Q ss_pred EEeCCccchhccChhhHHHHH
Q 023675 205 FMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++|||+..++......+++.+
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l 179 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERI 179 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHH
Confidence 999999999988776655443
No 182
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.65 E-value=1.1e-15 Score=135.93 Aligned_cols=142 Identities=19% Similarity=0.244 Sum_probs=97.7
Q ss_pred CeEEeecceeec--------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--
Q 023675 81 NILWHKNSVDKR--------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-- 144 (279)
Q Consensus 81 ~i~~~~~~~~~~--------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-- 144 (279)
.+++++++++|. ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCch
Confidence 367777777774 2338999999999999999999999999999999 89999999999876421
Q ss_pred --cccCCCCCcccH----------HHHHH-------------HHHHHHHHHHhCCcc-h----hcccCChHHHHH-HHHH
Q 023675 145 --LNRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI-C----IACLISPYRKDR-DACR 193 (279)
Q Consensus 145 --~~~~~~~~~~~~----------~~~~~-------------~v~~~~~~~~~~~~~-~----i~~~~~~~~~~r-~~ar 193 (279)
....++|.++.. ...+. ....+...+...++. . ....+|+++++| .+++
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 111122222110 00000 001122233333431 1 234588899888 8999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++.+|++ ++||||+..++....+.+++.+
T Consensus 163 al~~~p~l--llLDEPt~~LD~~~~~~l~~~l 192 (267)
T PRK15112 163 ALILRPKV--IIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred HHHhCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence 99999998 9999999999998777655543
No 183
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.2e-15 Score=135.78 Aligned_cols=142 Identities=16% Similarity=0.183 Sum_probs=100.0
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... +...+
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-KPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEecCcCCHHHHhcce
Confidence 4788888888842 238999999999999999999999999999999 89999999999887421 12223
Q ss_pred CCCcccH---------HHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 150 SFKAEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 150 ~~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
+|.+++. .+.+.. . ..+..++...++.. ....+|+++++| .++++++.+|++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l-- 163 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI-- 163 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE--
Confidence 3333221 111110 0 00112222333322 234578889888 899999999998
Q ss_pred EEEeCCccchhccChhhHHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++||||+..++....+.+++.+
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l 185 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIM 185 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHH
Confidence 9999999999998877665543
No 184
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.2e-15 Score=137.13 Aligned_cols=140 Identities=16% Similarity=0.130 Sum_probs=96.7
Q ss_pred eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc--------
Q 023675 82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------- 143 (279)
Q Consensus 82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-------- 143 (279)
|++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++..
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL-QPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEECccccccccHH
Confidence 567777777752 238999999999999999999999999999999 8999999999988631
Q ss_pred ccccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhC
Q 023675 144 GLNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 144 ~~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~ 196 (279)
.....++|.++.. .+.+.. ...+...+...++. .....+|+++++| .++++++
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~ 160 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILA 160 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHH
Confidence 0111222222210 111100 01122222223331 2234588899998 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
.+|++ ++||||+..++....+.+++.
T Consensus 161 ~~p~i--llLDEPt~gLD~~~~~~l~~~ 186 (288)
T PRK13643 161 MEPEV--LVLDEPTAGLDPKARIEMMQL 186 (288)
T ss_pred hCCCE--EEEECCccCCCHHHHHHHHHH
Confidence 99998 999999999998877665543
No 185
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=3.9e-15 Score=133.53 Aligned_cols=147 Identities=19% Similarity=0.189 Sum_probs=100.8
Q ss_pred CCCCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc-----
Q 023675 78 KSTNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH----- 143 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~----- 143 (279)
....++++++++.|.. +.+|++.+|++++|+|+||||||||+++|+|++.. |.+|.|+++|.++..
T Consensus 36 ~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 36 GETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred CCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 3445889999998864 33899999999999999999999999999999842 689999999987631
Q ss_pred -ccccCCCCCcc-------cHHHHHHH-----------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675 144 -GLNRDLSFKAE-------DRVENIRR-----------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 144 -~~~~~~~~~~~-------~~~~~~~~-----------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l 195 (279)
.....++|.++ ...+.+.. ...+...+...++ ......+|+++++| .+++++
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL 195 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAI 195 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 01111111111 11111111 0111222222232 11234688889888 999999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+.+|++ ++||||+..++....+.+.+.++
T Consensus 196 ~~~p~l--LLLDEPts~LD~~~~~~l~~~L~ 224 (285)
T PRK14254 196 APDPEV--ILMDEPASALDPVATSKIEDLIE 224 (285)
T ss_pred HcCCCE--EEEeCCCCCCCHHHHHHHHHHHH
Confidence 999998 99999999999988776655443
No 186
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.2e-15 Score=132.72 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=97.9
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~ 150 (279)
.++++++++.|.+ ..||++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....++
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-KPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 4677888877754 349999999999999999999999999999999 89999999999876321 011111
Q ss_pred CCcc--------cHHHHHHH---------------------------HHHHHHHHHhCCcch----hcccCChHHHHH-H
Q 023675 151 FKAE--------DRVENIRR---------------------------IGEVAKLFADAGVIC----IACLISPYRKDR-D 190 (279)
Q Consensus 151 ~~~~--------~~~~~~~~---------------------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~ 190 (279)
|.++ ...+.+.. .......+...++.. ....+|+++++| .
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~ 163 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLE 163 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHH
Confidence 1111 11111110 011112222333322 234578888888 8
Q ss_pred HHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++++++.+|++ +++|||+..++....+.+.+.+
T Consensus 164 la~al~~~p~l--lllDEPt~~LD~~~~~~l~~~L 196 (255)
T PRK11300 164 IARCMVTQPEI--LMLDEPAAGLNPKETKELDELI 196 (255)
T ss_pred HHHHHhcCCCE--EEEcCCccCCCHHHHHHHHHHH
Confidence 99999999998 9999999999988877655543
No 187
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=1.4e-15 Score=133.07 Aligned_cols=139 Identities=14% Similarity=0.221 Sum_probs=94.5
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~ 151 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|
T Consensus 4 l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 4 LTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-PRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 566677777753 449999999999999999999999999999999 89999999999876320 1111111
Q ss_pred Cccc--------HHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 152 KAED--------RVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 152 ~~~~--------~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
.++. ..+.+.. ......++...++.. ....+|+++++| .++++++.+|++ ++
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--ll 160 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKF--IL 160 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE--EE
Confidence 1111 0111100 001112222223322 234578888888 899999999998 99
Q ss_pred EeCCccchhccChhhHHH
Q 023675 206 MDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~ 223 (279)
+|||+..++......+.+
T Consensus 161 lDEPt~~LD~~~~~~l~~ 178 (241)
T PRK10895 161 LDEPFAGVDPISVIDIKR 178 (241)
T ss_pred EcCCcccCCHHHHHHHHH
Confidence 999999999887765443
No 188
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1.3e-15 Score=134.36 Aligned_cols=141 Identities=18% Similarity=0.144 Sum_probs=96.0
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK 152 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~ 152 (279)
+++++++++|.+ +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....++|.
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 566777777754 348999999999999999999999999999999 89999999999875310 01111111
Q ss_pred cc--------cHHHHHH----------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 153 AE--------DRVENIR----------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 153 ~~--------~~~~~~~----------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
++ ...+.+. ....+...+...++. .....+|+++++| .++++++.+|++
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l-- 159 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV-- 159 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence 11 0011110 000111222222332 2344578888888 999999999998
Q ss_pred EEEeCCccchhccChhhHHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++|||+..++....+.+.+.+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l 181 (255)
T PRK11231 160 VLLDEPTTYLDINHQVELMRLM 181 (255)
T ss_pred EEEcCCcccCCHHHHHHHHHHH
Confidence 9999999999998877765543
No 189
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=1e-15 Score=137.47 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=97.5
Q ss_pred eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675 82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------- 144 (279)
Q Consensus 82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------- 144 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-KPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEECccccccchHH
Confidence 456677776642 238999999999999999999999999999999 89999999999876321
Q ss_pred -cccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-h----hcccCChHHHHH-HHHHHhC
Q 023675 145 -LNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-C----IACLISPYRKDR-DACRSML 196 (279)
Q Consensus 145 -~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-~----i~~~~~~~~~~r-~~ar~l~ 196 (279)
....++|.+++. .+.+.. ...+..++...++. . ....+|+++++| .++++++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 111233322221 111110 00112223333442 1 234588899998 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ ++||||+..++....+.+.+.+
T Consensus 162 ~~p~l--LlLDEPt~gLD~~~~~~l~~~l 188 (287)
T PRK13641 162 YEPEI--LCLDEPAAGLDPEGRKEMMQLF 188 (287)
T ss_pred cCCCE--EEEECCCCCCCHHHHHHHHHHH
Confidence 99998 9999999999988776655443
No 190
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.65 E-value=1.6e-15 Score=134.64 Aligned_cols=129 Identities=20% Similarity=0.213 Sum_probs=89.1
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCCCCcccH----------
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR---------- 156 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~~~~~~~---------- 156 (279)
+.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|.++..
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv 107 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTV 107 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCH
Confidence 348999999999999999999999999999999 89999999999876421 111122222110
Q ss_pred HHHHH-------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675 157 VENIR-------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (279)
Q Consensus 157 ~~~~~-------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~ 217 (279)
.+.+. ....+...+...++. ..+..+|+++++| .++++++.+|++ ++||||+..++...
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~i--llLDEPt~~LD~~~ 185 (265)
T TIGR02769 108 RQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKL--IVLDEAVSNLDMVL 185 (265)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHH
Confidence 01000 001112223333432 1334578888888 899999999998 99999999999987
Q ss_pred hhhHHHHH
Q 023675 218 PKGLYKLA 225 (279)
Q Consensus 218 ~~~l~~~~ 225 (279)
.+.+++.+
T Consensus 186 ~~~l~~~l 193 (265)
T TIGR02769 186 QAVILELL 193 (265)
T ss_pred HHHHHHHH
Confidence 66655433
No 191
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.1e-15 Score=139.49 Aligned_cols=128 Identities=19% Similarity=0.253 Sum_probs=90.8
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCCCCcccH----------
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR---------- 156 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~~~~~~~---------- 156 (279)
+.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... +...+++.+++.
T Consensus 33 ~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~-~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v 111 (327)
T PRK11308 33 GVSFTLERGKTLAVVGESGCGKSTLARLLTMIE-TPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKV 111 (327)
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC-CCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCH
Confidence 449999999999999999999999999999999 78999999999887421 112233322211
Q ss_pred HHHHH-------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675 157 VENIR-------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (279)
Q Consensus 157 ~~~~~-------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~ 217 (279)
...+. ....+..++...++. .....+|+++++| .++++++.+|++ +++|||+..++...
T Consensus 112 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~l--LilDEPts~LD~~~ 189 (327)
T PRK11308 112 GQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDV--VVADEPVSALDVSV 189 (327)
T ss_pred HHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCE--EEEECCCccCCHHH
Confidence 00000 011122333333332 1344689999999 999999999998 99999999999887
Q ss_pred hhhHHHH
Q 023675 218 PKGLYKL 224 (279)
Q Consensus 218 ~~~l~~~ 224 (279)
...+++.
T Consensus 190 ~~~i~~l 196 (327)
T PRK11308 190 QAQVLNL 196 (327)
T ss_pred HHHHHHH
Confidence 7765543
No 192
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=135.34 Aligned_cols=144 Identities=19% Similarity=0.181 Sum_probs=98.0
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------c
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------G 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~ 144 (279)
..+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++.. |.+|.|.++|.++.. .
T Consensus 12 ~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~ 91 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVE 91 (269)
T ss_pred ceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHH
Confidence 45888999888864 34999999999999999999999999999999832 689999999987631 0
Q ss_pred cccCCCCCccc-------HHHHHHH----------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675 145 LNRDLSFKAED-------RVENIRR----------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 145 ~~~~~~~~~~~-------~~~~~~~----------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
....++|.+++ ..+.+.. . ......+...++ ......+++++++| .++++++.
T Consensus 92 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 171 (269)
T PRK14259 92 VRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI 171 (269)
T ss_pred HhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 11112222211 1111110 0 001111222221 11234578888888 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|++ +++|||+..++......+++.+
T Consensus 172 ~p~l--llLDEPt~gLD~~~~~~l~~~l 197 (269)
T PRK14259 172 EPEV--ILMDEPCSALDPISTLKIEETM 197 (269)
T ss_pred CCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence 9998 9999999999998877665544
No 193
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.64 E-value=2.3e-16 Score=168.61 Aligned_cols=146 Identities=17% Similarity=0.157 Sum_probs=103.8
Q ss_pred CCCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675 78 KSTNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN 146 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~ 146 (279)
..+.|+|+|++|+|..+ .||++++|+.++|||++|||||||+++|.|++ +|.+|.|++||.|+++. ++
T Consensus 1281 ~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1281 PRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred CCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeEEECCEEccccCHHHHH
Confidence 34689999999999643 28999999999999999999999999999999 89999999999998531 12
Q ss_pred cCCCCCccc-------HH-----------HHHHHHHHHHHH---HHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675 147 RDLSFKAED-------RV-----------ENIRRIGEVAKL---FAD--AGVI----CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 147 ~~~~~~~~~-------~~-----------~~~~~v~~~~~~---~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
..+++.+++ .+ +.+....+.+.+ ... .|+. ..+..+|+|++|| .+||+++++
T Consensus 1360 ~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~ 1439 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRK 1439 (1522)
T ss_pred hcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcC
Confidence 222211111 01 111111111111 111 1222 2345689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHh
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++ ++|||+++.++....+.+.+.++
T Consensus 1440 ~~I--LiLDEaTSalD~~Te~~Iq~~l~ 1465 (1522)
T TIGR00957 1440 TKI--LVLDEATAAVDLETDNLIQSTIR 1465 (1522)
T ss_pred CCE--EEEECCcccCCHHHHHHHHHHHH
Confidence 988 99999999999887666665554
No 194
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.64 E-value=4.7e-15 Score=127.53 Aligned_cols=143 Identities=17% Similarity=0.230 Sum_probs=98.2
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCCCCc
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKA 153 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~~~~ 153 (279)
..+++++++++|.++ .||++.+|++++|+|+||||||||+++|+|.+ .|++|.|.++|.++... ....++|.+
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-HVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCeeEEECCEEccchhhhhceEEee
Confidence 357888888888643 38999999999999999999999999999999 89999999999876421 000111111
Q ss_pred c--------cHHHHHHH--------H-HHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 154 E--------DRVENIRR--------I-GEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 154 ~--------~~~~~~~~--------v-~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
+ ...+.+.. . ......+...++ ......+++++++| .++++++.+|++ +++|||+.
T Consensus 89 q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~ 166 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPL--WLLDEPYA 166 (214)
T ss_pred cCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence 1 11111110 0 011112222232 12334578888888 899999999998 99999999
Q ss_pred chhccChhhHHHHH
Q 023675 212 VCEARDPKGLYKLA 225 (279)
Q Consensus 212 ~l~~R~~~~l~~~~ 225 (279)
.++....+.+.+.+
T Consensus 167 ~LD~~~~~~l~~~l 180 (214)
T PRK13543 167 NLDLEGITLVNRMI 180 (214)
T ss_pred cCCHHHHHHHHHHH
Confidence 99988776655443
No 195
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.64 E-value=2.9e-16 Score=153.57 Aligned_cols=144 Identities=18% Similarity=0.191 Sum_probs=100.8
Q ss_pred CCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 80 TNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 80 ~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
+.|++++++|+|+. +.+|++++|+.++|+|+||||||||+++|+|++ .|.+|.|++||.++.+. +..
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~I~i~g~~i~~~~~~~~~~ 414 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGRILLDGVDLRQLDPAELRA 414 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEEEECCEEHHhcCHHHHHH
Confidence 46999999999963 228999999999999999999999999999999 89999999999876421 111
Q ss_pred CCCCCccc--------------------HHHHHHHHHH--HHHHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAED--------------------RVENIRRIGE--VAKLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~~--------------------~~~~~~~v~~--~~~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.++|.+++ ..+....+.. +...+.. .|.. ..+..+|+|+++| .++|+++++
T Consensus 415 ~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~ 494 (576)
T TIGR02204 415 RMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKD 494 (576)
T ss_pred hceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhC
Confidence 11221111 1111111110 1111111 1222 2344588999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHh
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++ +++|||++.++....+.+++.++
T Consensus 495 ~~i--lilDEpts~lD~~~~~~i~~~l~ 520 (576)
T TIGR02204 495 API--LLLDEATSALDAESEQLVQQALE 520 (576)
T ss_pred CCe--EEEeCcccccCHHHHHHHHHHHH
Confidence 998 99999999999988776655443
No 196
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.1e-15 Score=137.43 Aligned_cols=142 Identities=17% Similarity=0.176 Sum_probs=98.9
Q ss_pred CCeEEeecceeecCC----------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------
Q 023675 80 TNILWHKNSVDKRDR----------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------ 143 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~----------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------ 143 (279)
+.+++++++++|..+ .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-ISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEccccccccc
Confidence 568888888888642 28999999999999999999999999999999 8999999999987631
Q ss_pred ---ccccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHH
Q 023675 144 ---GLNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACR 193 (279)
Q Consensus 144 ---~~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar 193 (279)
.....++|.++.. .+.+.. ...+..++...++. .....+|+++++| .+++
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 0111223222211 111100 00111222222331 1234588899988 8999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+++.+|++ ++||||+..++....+.+++.
T Consensus 164 al~~~p~l--LlLDEPt~~LD~~~~~~l~~~ 192 (289)
T PRK13645 164 IIAMDGNT--LVLDEPTGGLDPKGEEDFINL 192 (289)
T ss_pred HHHhCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence 99999998 999999999999887765543
No 197
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.3e-15 Score=136.08 Aligned_cols=140 Identities=16% Similarity=0.173 Sum_probs=96.1
Q ss_pred eEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675 82 ILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~ 151 (279)
+++++++++|.. +.+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....+++
T Consensus 4 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHHhheEE
Confidence 567777777742 238999999999999999999999999999999 89999999999876421 1111222
Q ss_pred Cccc---------HHHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 152 KAED---------RVENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 152 ~~~~---------~~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
.+++ ..+.+.. . ..+...+...++.. .+..+|+++++| .++++++.+|++ ++
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~l--li 160 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQV--LV 160 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EE
Confidence 1111 1111110 0 00111222223321 344688889888 899999999998 99
Q ss_pred EeCCccchhccChhhHHHH
Q 023675 206 MDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~~ 224 (279)
+|||+..++....+.+++.
T Consensus 161 lDEPt~gLD~~~~~~l~~~ 179 (277)
T PRK13652 161 LDEPTAGLDPQGVKELIDF 179 (277)
T ss_pred EeCCcccCCHHHHHHHHHH
Confidence 9999999998877665543
No 198
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.64 E-value=3.3e-16 Score=127.38 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=90.2
Q ss_pred eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c-ccCCCCCcccHH---
Q 023675 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L-NRDLSFKAEDRV--- 157 (279)
Q Consensus 89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~-~~~~~~~~~~~~--- 157 (279)
++...+.+|.+++|+.++|||+||||||||+-.|+|+- .|++|+|++.|.++.+. + ...++|.++...
T Consensus 23 l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip 101 (228)
T COG4181 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-DPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIP 101 (228)
T ss_pred eeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-CCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccc
Confidence 34445669999999999999999999999999999987 99999999999988421 1 112233322110
Q ss_pred -----HH------------HHHHHHHHHHHHhCC----cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675 158 -----EN------------IRRIGEVAKLFADAG----VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (279)
Q Consensus 158 -----~~------------~~~v~~~~~~~~~~~----~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~ 215 (279)
++ .........++..-| +..+...++++++|| +++|+++..|++ +|-|||+-.++.
T Consensus 102 ~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~v--LfADEPTGNLD~ 179 (228)
T COG4181 102 NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDV--LFADEPTGNLDR 179 (228)
T ss_pred cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCE--EeccCCCCCcch
Confidence 00 000011111222222 234667789999999 999999999988 999999999987
Q ss_pred cChhh
Q 023675 216 RDPKG 220 (279)
Q Consensus 216 R~~~~ 220 (279)
..-+.
T Consensus 180 ~Tg~~ 184 (228)
T COG4181 180 ATGDK 184 (228)
T ss_pred hHHHH
Confidence 66544
No 199
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=2e-15 Score=132.46 Aligned_cols=143 Identities=15% Similarity=0.165 Sum_probs=97.2
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--cCCccEEEEcCeecccc----cccCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WRGKLTYILDGDNCRHG----LNRDLS 150 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~~~~G~i~ldgd~i~~~----~~~~~~ 150 (279)
|+++++++.|.. +.||++.+|++++|+|+||||||||+++|+|++. .|.+|.|.++|.++... ....++
T Consensus 3 ~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 82 (246)
T PRK14269 3 AKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVG 82 (246)
T ss_pred eeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEE
Confidence 456777777754 3389999999999999999999999999999973 36899999999887421 111122
Q ss_pred CCccc-------HHHHHHH--------------HHHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHhCCCCC
Q 023675 151 FKAED-------RVENIRR--------------IGEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 151 ~~~~~-------~~~~~~~--------------v~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
|.+++ ..+.+.. ...+...+...++. .....+++++++| .++++++.+|+
T Consensus 83 ~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~ 162 (246)
T PRK14269 83 MVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPK 162 (246)
T ss_pred EEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 21111 1111100 00112223333331 1234588899988 89999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ ++||||+..++......+.+.+.
T Consensus 163 l--llLDEP~~~LD~~~~~~l~~~l~ 186 (246)
T PRK14269 163 L--LLLDEPTSALDPISSGVIEELLK 186 (246)
T ss_pred E--EEEcCCcccCCHHHHHHHHHHHH
Confidence 8 99999999999887776655443
No 200
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.64 E-value=4.3e-15 Score=126.14 Aligned_cols=140 Identities=18% Similarity=0.199 Sum_probs=93.6
Q ss_pred EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCcc
Q 023675 83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAE 154 (279)
Q Consensus 83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~ 154 (279)
+++++++.|. ++.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.++
T Consensus 2 ~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 2 AARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred EEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccchHHhhhheEEecc
Confidence 3455555554 4559999999999999999999999999999999 89999999999876321 0011111111
Q ss_pred --------cHHHHHHHH--------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675 155 --------DRVENIRRI--------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (279)
Q Consensus 155 --------~~~~~~~~v--------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l 213 (279)
...+.+... ..+...+...++.. ....+|+++++| .++++++.+|++ +++|||++.+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~L 158 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPL--WILDEPTTAL 158 (198)
T ss_pred CcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCC
Confidence 111111110 01122222223321 234578888888 899999999998 9999999999
Q ss_pred hccChhhHHHHH
Q 023675 214 EARDPKGLYKLA 225 (279)
Q Consensus 214 ~~R~~~~l~~~~ 225 (279)
+....+.+.+.+
T Consensus 159 D~~~~~~l~~~l 170 (198)
T TIGR01189 159 DKAGVALLAGLL 170 (198)
T ss_pred CHHHHHHHHHHH
Confidence 987766655443
No 201
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.64 E-value=1.2e-15 Score=139.40 Aligned_cols=128 Identities=20% Similarity=0.211 Sum_probs=89.7
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cccCCCCCcccH----------
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LNRDLSFKAEDR---------- 156 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~~~~~~~~~~~---------- 156 (279)
+.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... +...++|.+++.
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv 117 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-KATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTI 117 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCH
Confidence 449999999999999999999999999999999 89999999999987421 111222222210
Q ss_pred HHHHH-------------HH-HHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 157 VENIR-------------RI-GEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 157 ~~~~~-------------~v-~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
.+++. .. ..+..++...++. .....+|+++++| .++++++.+|++ +++|||+..|+..
T Consensus 118 ~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~l--lilDEPts~LD~~ 195 (331)
T PRK15079 118 GEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKL--IICDEPVSALDVS 195 (331)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCCccCCHH
Confidence 11110 00 0111223333331 2344589999999 999999999998 9999999999988
Q ss_pred ChhhHHHH
Q 023675 217 DPKGLYKL 224 (279)
Q Consensus 217 ~~~~l~~~ 224 (279)
....+++.
T Consensus 196 ~~~~i~~l 203 (331)
T PRK15079 196 IQAQVVNL 203 (331)
T ss_pred HHHHHHHH
Confidence 87765543
No 202
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.6e-15 Score=133.61 Aligned_cols=143 Identities=20% Similarity=0.170 Sum_probs=97.7
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc------c
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH------G 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~------~ 144 (279)
.++++++++.|.. +.||++++|++++|+|+||||||||+++|+|++ .| .+|.|+++|.++.. .
T Consensus 7 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (254)
T PRK14273 7 IIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMN-DLVEGIKIEGNVIYEGKNIYSNNFDILE 85 (254)
T ss_pred eEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccc-cCCcCCCCceEEEECCEecccccccHHH
Confidence 5788888888864 349999999999999999999999999999999 54 58999999987631 1
Q ss_pred cccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l 195 (279)
....++|.+++ ..+.+.. . ..+...+...++ ......+|+++++| .+++++
T Consensus 86 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 86 LRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred HhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 11112222211 1111100 0 011111122222 11244588899988 999999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+.+|++ +++|||+..++......+++.+.
T Consensus 166 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l~ 194 (254)
T PRK14273 166 AIEPNV--ILMDEPTSALDPISTGKIEELII 194 (254)
T ss_pred HcCCCE--EEEeCCCcccCHHHHHHHHHHHH
Confidence 999998 99999999999988777655443
No 203
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.9e-15 Score=134.92 Aligned_cols=141 Identities=16% Similarity=0.184 Sum_probs=97.2
Q ss_pred eEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------cccCC
Q 023675 82 ILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------LNRDL 149 (279)
Q Consensus 82 i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------~~~~~ 149 (279)
++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEECccccchHHHHHhhe
Confidence 456677777742 338999999999999999999999999999999 89999999999887311 11122
Q ss_pred CCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 150 SFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 150 ~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
+|.+++. .+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~l-- 158 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEI-- 158 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--
Confidence 3322221 111100 011222223333322 234578888888 899999999998
Q ss_pred EEEeCCccchhccChhhHHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++|||+..++......+.+.+
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l 180 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLL 180 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHH
Confidence 9999999999998877655443
No 204
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=1.1e-15 Score=138.41 Aligned_cols=140 Identities=19% Similarity=0.133 Sum_probs=97.1
Q ss_pred eEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc--------
Q 023675 82 ILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------- 143 (279)
Q Consensus 82 i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-------- 143 (279)
|++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEEeceeccccccccccc
Confidence 567777777753 239999999999999999999999999999999 8999999999765410
Q ss_pred --------------------ccccCCCCCccc---------HHHHHH------------HHHHHHHHHHhCCcc-h----
Q 023675 144 --------------------GLNRDLSFKAED---------RVENIR------------RIGEVAKLFADAGVI-C---- 177 (279)
Q Consensus 144 --------------------~~~~~~~~~~~~---------~~~~~~------------~v~~~~~~~~~~~~~-~---- 177 (279)
.....++|.+++ ..+.+. ....+...+...++. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 011122332221 011110 001122233333442 1
Q ss_pred hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 178 IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 178 i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
....+|+++++| .++++++.+|++ +++|||+..++......+++.
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~l--LlLDEPt~~LD~~~~~~l~~~ 207 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDF--LVFDEPTAGLDPQGVKEILEI 207 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHH
Confidence 344588899998 999999999998 999999999998877665543
No 205
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.64 E-value=1.2e-15 Score=134.43 Aligned_cols=141 Identities=21% Similarity=0.142 Sum_probs=96.7
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-----cccc------
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-----CRHG------ 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-----i~~~------ 144 (279)
.++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.+ +...
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecccccccccccCCHHHHH
Confidence 3677788777753 349999999999999999999999999999999 8999999999876 3210
Q ss_pred --cccCCCCCcccH----------HHHH-------------HHHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHH
Q 023675 145 --LNRDLSFKAEDR----------VENI-------------RRIGEVAKLFADAGVI-----CIACLISPYRKDR-DACR 193 (279)
Q Consensus 145 --~~~~~~~~~~~~----------~~~~-------------~~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar 193 (279)
....+++.+++. ...+ .....+...+...++. ..+..+|+++++| .+++
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 011122211110 0000 0001112223333332 1334588899888 9999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+++.+|++ +++|||++.++....+.+++.
T Consensus 162 al~~~p~v--lllDEP~~~LD~~~~~~l~~~ 190 (253)
T TIGR02323 162 NLVTRPRL--VFMDEPTGGLDVSVQARLLDL 190 (253)
T ss_pred HHhcCCCE--EEEcCCCccCCHHHHHHHHHH
Confidence 99999998 999999999998887765543
No 206
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.64 E-value=3.2e-15 Score=131.72 Aligned_cols=142 Identities=18% Similarity=0.145 Sum_probs=94.6
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE- 154 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~- 154 (279)
.+++++++++|.++ .+|++++|++++|+|+||||||||+++|+|++ .|.+|.|.+++......+.....+...
T Consensus 4 ~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~~~~~i~~v~q~~~~~~~l 82 (251)
T PRK09544 4 LVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APDEGVIKRNGKLRIGYVPQKLYLDTTL 82 (251)
T ss_pred EEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCccCEEEecccccccccc
Confidence 36777888877643 38999999999999999999999999999999 899999999874210000111011000
Q ss_pred --cHHHHHHH-----HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 155 --DRVENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 155 --~~~~~~~~-----v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
........ ...+...+...++.. ....+|+++++| .++++++.+|++ +++|||+..++......++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~l--llLDEPt~~LD~~~~~~l~ 160 (251)
T PRK09544 83 PLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQL--LVLDEPTQGVDVNGQVALY 160 (251)
T ss_pred ChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHH
Confidence 01111000 011122222233322 344578888888 899999999998 9999999999988777655
Q ss_pred HHH
Q 023675 223 KLA 225 (279)
Q Consensus 223 ~~~ 225 (279)
+.+
T Consensus 161 ~~L 163 (251)
T PRK09544 161 DLI 163 (251)
T ss_pred HHH
Confidence 443
No 207
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.64 E-value=2.7e-15 Score=129.31 Aligned_cols=143 Identities=23% Similarity=0.261 Sum_probs=96.4
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
.++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....+
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i 80 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSVLLDGTDIRQLDPADLRRNI 80 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 4667777777753 238999999999999999999999999999999 89999999999875310 00111
Q ss_pred CCCccc-------HHHHHHH------HHHHHHHHHhCCcch---------------hcccCChHHHHH-HHHHHhCCCCC
Q 023675 150 SFKAED-------RVENIRR------IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 150 ~~~~~~-------~~~~~~~------v~~~~~~~~~~~~~~---------------i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
+|.+++ ..+.+.. -..+...+...++.. ....+|+++++| .++++++.+|+
T Consensus 81 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 81 GYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 111111 1111100 000111111111111 124688899888 89999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ +++|||+..++......+++.+.
T Consensus 161 l--lllDEPt~~LD~~~~~~l~~~l~ 184 (220)
T cd03245 161 I--LLLDEPTSAMDMNSEERLKERLR 184 (220)
T ss_pred E--EEEeCccccCCHHHHHHHHHHHH
Confidence 8 99999999999998877766554
No 208
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=4.4e-15 Score=129.15 Aligned_cols=141 Identities=19% Similarity=0.230 Sum_probs=96.3
Q ss_pred eEEeecceeecC---CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc--
Q 023675 82 ILWHKNSVDKRD---RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE-- 154 (279)
Q Consensus 82 i~~~~~~~~~~~---~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~-- 154 (279)
+++++++++|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.++
T Consensus 2 l~~~~l~~~~~~~~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~ 80 (232)
T PRK10771 2 LKLTDITWLYHHLPMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLTLNGQDHTTTPPSRRPVSMLFQEN 80 (232)
T ss_pred eEEEEEEEEECCccceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCeecCcCChhhccEEEEeccc
Confidence 456777777753 459999999999999999999999999999999 89999999999876321 0011111111
Q ss_pred ------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 155 ------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 155 ------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
...+.+.. -..+..++...++.. ....+|+++++| .++++++.+|++ +++|||+.
T Consensus 81 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--llLDEP~~ 158 (232)
T PRK10771 81 NLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPI--LLLDEPFS 158 (232)
T ss_pred ccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCcc
Confidence 11111100 001122222233322 334588888888 899999999998 99999999
Q ss_pred chhccChhhHHHHH
Q 023675 212 VCEARDPKGLYKLA 225 (279)
Q Consensus 212 ~l~~R~~~~l~~~~ 225 (279)
.++....+.+.+.+
T Consensus 159 gLD~~~~~~~~~~l 172 (232)
T PRK10771 159 ALDPALRQEMLTLV 172 (232)
T ss_pred cCCHHHHHHHHHHH
Confidence 99998877655433
No 209
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.64 E-value=3.6e-15 Score=132.32 Aligned_cols=141 Identities=17% Similarity=0.153 Sum_probs=97.2
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF 151 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~ 151 (279)
.++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|
T Consensus 11 ~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-PPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 4778888888853 349999999999999999999999999999999 89999999999876311 0011111
Q ss_pred Ccc--------cHHHHHH----------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 152 KAE--------DRVENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 152 ~~~--------~~~~~~~----------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
.++ ...+.+. ....+...+...++.. ....+|+++++| .++++++.+|++
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l- 168 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRC- 168 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCE-
Confidence 111 1111110 0011122222223322 234578889888 999999999998
Q ss_pred EEEEeCCccchhccChhhHHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||+..++....+.+.+.
T Consensus 169 -llLDEPt~~LD~~~~~~~~~~ 189 (265)
T PRK10575 169 -LLLDEPTSALDIAHQVDVLAL 189 (265)
T ss_pred -EEEcCCcccCCHHHHHHHHHH
Confidence 999999999999887765543
No 210
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.64 E-value=1.2e-15 Score=140.79 Aligned_cols=131 Identities=21% Similarity=0.241 Sum_probs=92.6
Q ss_pred cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c----ccCCCCCcc--------c
Q 023675 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRDLSFKAE--------D 155 (279)
Q Consensus 92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~----~~~~~~~~~--------~ 155 (279)
.++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... + ...++|.++ .
T Consensus 9 l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred EEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 34568899999999999999999999999999999 89999999999887521 1 112222221 1
Q ss_pred HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 156 RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 156 ~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
..+++.. ...+..++...++.. ....+|+++++| .++|+++.+|++ +++|||+..++....
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i--LLlDEP~saLD~~~r 165 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI--LLMDEAFSALDPLIR 165 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHH
Confidence 1111110 011222233333322 344688999999 899999999998 999999999999887
Q ss_pred hhHHHHH
Q 023675 219 KGLYKLA 225 (279)
Q Consensus 219 ~~l~~~~ 225 (279)
+.+++.+
T Consensus 166 ~~l~~~l 172 (363)
T TIGR01186 166 DSMQDEL 172 (363)
T ss_pred HHHHHHH
Confidence 7766543
No 211
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.64 E-value=1.1e-15 Score=128.82 Aligned_cols=130 Identities=17% Similarity=0.213 Sum_probs=89.7
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------ccccCCCCCccc---------HH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRDLSFKAED---------RV 157 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------~~~~~~~~~~~~---------~~ 157 (279)
++.||++++|++++|+|+||||||||+++|+|.+ .|++|.|+++|.++.. .....++|.+++ ..
T Consensus 9 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 87 (190)
T TIGR01166 9 KGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVD 87 (190)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHH
Confidence 4568999999999999999999999999999999 8999999999987631 011112222211 11
Q ss_pred HHHHH------------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 158 ENIRR------------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 158 ~~~~~------------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
+.+.. ...+...+...++. .....+|+++++| .++++++.+|++ +++|||+..++....+.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEPt~~LD~~~~~~ 165 (190)
T TIGR01166 88 QDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDV--LLLDEPTAGLDPAGREQ 165 (190)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCHHHHHH
Confidence 11100 00111222222322 1344578888888 899999999998 99999999999988777
Q ss_pred HHHHH
Q 023675 221 LYKLA 225 (279)
Q Consensus 221 l~~~~ 225 (279)
+.+.+
T Consensus 166 ~~~~l 170 (190)
T TIGR01166 166 MLAIL 170 (190)
T ss_pred HHHHH
Confidence 65543
No 212
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.8e-15 Score=138.08 Aligned_cols=141 Identities=20% Similarity=0.227 Sum_probs=96.9
Q ss_pred eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc---CCccEEEEcCeecccc-----
Q 023675 82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG----- 144 (279)
Q Consensus 82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~---~~~G~i~ldgd~i~~~----- 144 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|++.. +.+|.|+++|.++...
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 456666666543 44999999999999999999999999999999842 4789999999987421
Q ss_pred ---cccCCCCCcccH--------------HHHHH---------HHHHHHHHHHhCCcc-------hhcccCChHHHHH-H
Q 023675 145 ---LNRDLSFKAEDR--------------VENIR---------RIGEVAKLFADAGVI-------CIACLISPYRKDR-D 190 (279)
Q Consensus 145 ---~~~~~~~~~~~~--------------~~~~~---------~v~~~~~~~~~~~~~-------~i~~~~~~~~~~r-~ 190 (279)
....+++.+++. .+.+. ....+..++...++. .....+|+++++| .
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~ 163 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM 163 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 011222222211 01110 001122333444442 1344689999999 9
Q ss_pred HHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++++++.+|++ +++|||+..++......+++.
T Consensus 164 iArAL~~~P~l--lilDEPts~LD~~~~~~il~l 195 (326)
T PRK11022 164 IAMAIACRPKL--LIADEPTTALDVTIQAQIIEL 195 (326)
T ss_pred HHHHHHhCCCE--EEEeCCCCCCCHHHHHHHHHH
Confidence 99999999998 999999999999887765543
No 213
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.63 E-value=1.6e-15 Score=130.95 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=94.8
Q ss_pred eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------c
Q 023675 82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------L 145 (279)
Q Consensus 82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~ 145 (279)
++++++++.|. +..||++++|++++|+|+||||||||+++|+|.+ .|.+|+|+++|.++... .
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEhHhcCHhHHHHH
Confidence 34555555553 2348999999999999999999999999999999 89999999999877321 1
Q ss_pred ccCCCCCcccH--------HHHHH-------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 146 NRDLSFKAEDR--------VENIR-------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 146 ~~~~~~~~~~~--------~~~~~-------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
...+++.+++. .+.+. ....+...+...++. .....+++++++| .++++++.+|
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p 160 (220)
T TIGR02982 81 RRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRP 160 (220)
T ss_pred HhheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 11122211110 01000 001122222223332 1334578888888 8999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHH
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++ +++|||+..++....+.+++.+
T Consensus 161 ~i--lllDEP~~~LD~~~~~~l~~~l 184 (220)
T TIGR02982 161 KL--VLADEPTAALDSKSGRDVVELM 184 (220)
T ss_pred CE--EEEeCCCCcCCHHHHHHHHHHH
Confidence 98 9999999999998877655543
No 214
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.63 E-value=4.1e-15 Score=127.12 Aligned_cols=141 Identities=21% Similarity=0.134 Sum_probs=99.1
Q ss_pred CCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675 80 TNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD 148 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~ 148 (279)
+.+++++++++|.. +.+|.+++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeEEECCEEhHHCCHHHHHhh
Confidence 45788888888863 238999999999999999999999999999999 89999999999876311 1111
Q ss_pred CCCCccc-------HHHHHHH-----HHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675 149 LSFKAED-------RVENIRR-----IGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (279)
Q Consensus 149 ~~~~~~~-------~~~~~~~-----v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~ 215 (279)
++|.+++ ..+.+.. ..++...+. .......+++++++| .++++++.+|++ +++|||+..++.
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~~~~~~~~~~l~---~~~~~~~LS~G~~qrv~laral~~~p~l--lllDEP~~~LD~ 158 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDEYSDEEIYGALR---VSEGGLNLSQGQRQLLCLARALLKRPRV--LVLDEATASIDY 158 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCCCCHHHHHHHhh---ccCCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCcccCCH
Confidence 2222211 1111100 001111111 222345688888888 999999999998 999999999999
Q ss_pred cChhhHHHHHh
Q 023675 216 RDPKGLYKLAR 226 (279)
Q Consensus 216 R~~~~l~~~~~ 226 (279)
...+.+++.++
T Consensus 159 ~~~~~l~~~l~ 169 (207)
T cd03369 159 ATDALIQKTIR 169 (207)
T ss_pred HHHHHHHHHHH
Confidence 88777666554
No 215
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=1.2e-15 Score=132.76 Aligned_cols=141 Identities=21% Similarity=0.211 Sum_probs=93.7
Q ss_pred EEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675 83 LWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK 152 (279)
Q Consensus 83 ~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~ 152 (279)
++++++++|.. +.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.
T Consensus 2 ~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 2 EFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred EEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 45666666642 338999999999999999999999999999999 89999999999876321 01111111
Q ss_pred ccc-------HHHHHH---------HHHH------HHHHHHhC--Cc----chhcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 153 AED-------RVENIR---------RIGE------VAKLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 153 ~~~-------~~~~~~---------~v~~------~~~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
+++ ..+.+. .+.. +...+... +. ......+|+++++| .++++++.+|++
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l-- 158 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI-- 158 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE--
Confidence 111 001000 0000 00010100 11 01134678888888 999999999998
Q ss_pred EEEeCCccchhccChhhHHHHHh
Q 023675 204 VFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++|||++.++....+.+++.+.
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~ 181 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALR 181 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999988777665543
No 216
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.1e-15 Score=132.84 Aligned_cols=142 Identities=19% Similarity=0.135 Sum_probs=96.2
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc------c
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH------G 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~------~ 144 (279)
.++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|.+ .| .+|.|+++|.++.. .
T Consensus 4 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL-ELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CcccCCCCceEEEECCEEccccccChHH
Confidence 3667777777754 339999999999999999999999999999998 55 59999999987631 0
Q ss_pred cccCCCCCccc--------HHHHHHH-------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHH
Q 023675 145 LNRDLSFKAED--------RVENIRR-------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACR 193 (279)
Q Consensus 145 ~~~~~~~~~~~--------~~~~~~~-------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar 193 (279)
....++|.++. ..+.+.. . ..+...+...++ ......+|+++++| .+++
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIAR 162 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHH
Confidence 11112221111 1111110 0 011222222232 11344578889888 8999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++.+|++ +++|||+..++....+.+++.+
T Consensus 163 al~~~p~l--lllDEP~~~LD~~~~~~l~~~l 192 (253)
T PRK14267 163 ALAMKPKI--LLMDEPTANIDPVGTAKIEELL 192 (253)
T ss_pred HHhcCCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence 99999988 9999999999988777655543
No 217
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.63 E-value=4e-15 Score=129.70 Aligned_cols=141 Identities=20% Similarity=0.269 Sum_probs=94.0
Q ss_pred EEeecceeec-------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675 83 LWHKNSVDKR-------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF 151 (279)
Q Consensus 83 ~~~~~~~~~~-------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~ 151 (279)
+++++++.|. ++.+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|
T Consensus 2 ~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 2 TFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY-VPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred EEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 4556666664 2348999999999999999999999999999999 89999999999876310 0111111
Q ss_pred CcccH-------HHHH---------HHHHHHH------HHHHhC--Cc----chhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 152 KAEDR-------VENI---------RRIGEVA------KLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 152 ~~~~~-------~~~~---------~~v~~~~------~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
.++.. .+.+ ..+.+.. ..+... +. ...+..+|+++++| .++++++.+|++
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l- 159 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI- 159 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE-
Confidence 11110 0000 0011000 111110 11 11235688899988 899999999998
Q ss_pred EEEEeCCccchhccChhhHHHHHh
Q 023675 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++|||+..++......+++.+.
T Consensus 160 -lllDEP~~~LD~~~~~~l~~~l~ 182 (237)
T cd03252 160 -LIFDEATSALDYESEHAIMRNMH 182 (237)
T ss_pred -EEEeCCcccCCHHHHHHHHHHHH
Confidence 99999999999988877665544
No 218
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.9e-15 Score=133.59 Aligned_cols=143 Identities=20% Similarity=0.189 Sum_probs=95.8
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------cc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GL 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~ 145 (279)
.+++++++++|.. +.||++.+|++++|+|+||||||||+++|+|.+.. |.+|.|.++|.++.. ..
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 4677888777754 34999999999999999999999999999999832 269999999987621 01
Q ss_pred ccCCCCCcc--------cHHHHHHH------------HH-HHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675 146 NRDLSFKAE--------DRVENIRR------------IG-EVAKLFADAGV--------ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 146 ~~~~~~~~~--------~~~~~~~~------------v~-~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l 195 (279)
...++|.++ ...+.+.. .. .+..++...++ ...+..+|+++++| .+++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 111221111 11111110 00 11112222222 12345688899888 999999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+|++ +++|||+..++......+.+.+
T Consensus 164 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l 191 (258)
T PRK14241 164 AVEPDV--LLMDEPCSALDPISTLAIEDLI 191 (258)
T ss_pred hcCCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence 999998 9999999999988776655433
No 219
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.3e-15 Score=133.60 Aligned_cols=143 Identities=20% Similarity=0.211 Sum_probs=98.2
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCC
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS 150 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~ 150 (279)
..+++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++... ....++
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM-TPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 35677888887764 349999999999999999999999999999999 89999999999876321 011111
Q ss_pred CCccc--------HHHHHH----------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675 151 FKAED--------RVENIR----------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 151 ~~~~~--------~~~~~~----------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
|.+++ ..+.+. ....+...+...++. ..+..+|+++++| .++++++.+|++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~l 164 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAI 164 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCE
Confidence 11110 001100 000111122222332 2345688888888 899999999998
Q ss_pred cEEEEeCCccchhccChhhHHHHH
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++|||+..++....+.+++.+
T Consensus 165 --lllDEPt~gLD~~~~~~l~~~L 186 (265)
T PRK10253 165 --MLLDEPTTWLDISHQIDLLELL 186 (265)
T ss_pred --EEEeCccccCCHHHHHHHHHHH
Confidence 9999999999988877765543
No 220
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.63 E-value=2.1e-15 Score=133.00 Aligned_cols=142 Identities=20% Similarity=0.175 Sum_probs=96.7
Q ss_pred CeEEeecceeec----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC----CccEEEEcCeecccc--cccCCC
Q 023675 81 NILWHKNSVDKR----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHG--LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~----~~G~i~ldgd~i~~~--~~~~~~ 150 (279)
.+++++++++|. .+.||++.+|++++|+|+||||||||+++|+|.+ .| ++|.|+++|.++... ....++
T Consensus 4 ~l~~~~l~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGIL-PAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEeccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCcCCEEEECCeeccccccccceEE
Confidence 467788887773 2348999999999999999999999999999999 67 899999999876311 001111
Q ss_pred CCcccH----------HHHHH----------HHHHHHHHHHhCCcch-------hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 151 FKAEDR----------VENIR----------RIGEVAKLFADAGVIC-------IACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 151 ~~~~~~----------~~~~~----------~v~~~~~~~~~~~~~~-------i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
|.+++. ..... ....+...+...++.. ....+|+++++| .++++++.+|++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~l- 161 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPF- 161 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCE-
Confidence 111110 00000 0011222233333321 234578888888 999999999998
Q ss_pred EEEEeCCccchhccChhhHHHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++||||++.++......+++.+
T Consensus 162 -LlLDEPt~~LD~~~~~~l~~~L 183 (254)
T PRK10418 162 -IIADEPTTDLDVVAQARILDLL 183 (254)
T ss_pred -EEEeCCCcccCHHHHHHHHHHH
Confidence 9999999999988776655443
No 221
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.63 E-value=2.8e-15 Score=130.86 Aligned_cols=141 Identities=21% Similarity=0.206 Sum_probs=95.8
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc-
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE- 154 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~- 154 (279)
+++++++.|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|..|.|.++|.++... ....++|.++
T Consensus 2 ~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 2 EIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred EEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 45566666653 348999999999999999999999999999999 89999999999887421 1111121111
Q ss_pred -------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675 155 -------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (279)
Q Consensus 155 -------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~ 210 (279)
...+.+.. ...+...+...++.. ....+|+++++| .++++++.+|++ +++|||+
T Consensus 81 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~ 158 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQV--LLLDEPF 158 (237)
T ss_pred hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence 11111110 011122233333321 234578888888 999999999998 9999999
Q ss_pred cchhccChhhHHHHHh
Q 023675 211 QVCEARDPKGLYKLAR 226 (279)
Q Consensus 211 ~~l~~R~~~~l~~~~~ 226 (279)
..++....+.+++.+.
T Consensus 159 ~~LD~~~~~~~~~~l~ 174 (237)
T TIGR00968 159 GALDAKVRKELRSWLR 174 (237)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9999988776655443
No 222
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=2.2e-15 Score=134.01 Aligned_cols=129 Identities=21% Similarity=0.248 Sum_probs=90.1
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c----ccCCCCCcc--------cH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRDLSFKAE--------DR 156 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~----~~~~~~~~~--------~~ 156 (279)
++.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... + ...++|.++ ..
T Consensus 41 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 119 (269)
T cd03294 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTV 119 (269)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcccCCCCcH
Confidence 4559999999999999999999999999999999 89999999999876321 0 111222111 11
Q ss_pred HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675 157 VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 157 ~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
.+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ ++||||+..++....+
T Consensus 120 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~i--llLDEPt~~LD~~~~~ 197 (269)
T cd03294 120 LENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDI--LLMDEAFSALDPLIRR 197 (269)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCCccCCHHHHH
Confidence 111110 011122233333322 244588899998 899999999998 9999999999998877
Q ss_pred hHHHH
Q 023675 220 GLYKL 224 (279)
Q Consensus 220 ~l~~~ 224 (279)
.+++.
T Consensus 198 ~l~~~ 202 (269)
T cd03294 198 EMQDE 202 (269)
T ss_pred HHHHH
Confidence 76554
No 223
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.63 E-value=2.7e-15 Score=132.41 Aligned_cols=141 Identities=20% Similarity=0.200 Sum_probs=95.3
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK 152 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~ 152 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL-RPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 455666666653 349999999999999999999999999999999 89999999999876321 00111111
Q ss_pred ccc--------HHHHHH----------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 153 AED--------RVENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 153 ~~~--------~~~~~~----------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
+++ ..+.+. ....+...+...++.. .+..+|+++++| .++++++.+|++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~l-- 158 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKL-- 158 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence 110 011110 0001122222233322 344578888888 899999999998
Q ss_pred EEEeCCccchhccChhhHHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++|||+..++....+.+.+.+
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l 180 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALV 180 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHH
Confidence 9999999999988777655433
No 224
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=4.3e-15 Score=130.60 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=96.0
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeeccc------cc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GL 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~~------~~ 145 (279)
.++++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|++.. | .+|+|+++|.++.. ..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 4677888888764 33899999999999999999999999999998731 2 68999999987642 01
Q ss_pred ccCCCCCcc-------cHHHHHHH------------HH-HHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAE-------DRVENIRR------------IG-EVAKLFADAGV--------ICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~-------~~~~~~~~------------v~-~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
...++|.++ ...+.+.. .. .+...+...++ ...+..+|+++++| .++++++
T Consensus 83 ~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 162 (250)
T PRK14240 83 RKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALA 162 (250)
T ss_pred hccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHh
Confidence 111222111 11111110 00 01111112221 11234588899888 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ +++|||+..++......+.+.+
T Consensus 163 ~~p~l--lllDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14240 163 VEPEV--LLMDEPTSALDPISTLKIEELI 189 (250)
T ss_pred cCCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence 99998 9999999999988777655543
No 225
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.4e-15 Score=132.29 Aligned_cols=144 Identities=17% Similarity=0.135 Sum_probs=96.7
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------cc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GL 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~ 145 (279)
.+++++++++|.. ..||++.+|++++|+|+||||||||+++|+|.+.. |.+|.|.++|.++.. ..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 3677888888864 34999999999999999999999999999999831 479999999987631 01
Q ss_pred ccCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
...+++.++ ...+.+.. . ..+...+...++ ......+|+++++| .++++++
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~ 163 (251)
T PRK14251 84 RKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALA 163 (251)
T ss_pred hccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHh
Confidence 111222111 11111110 0 011112222232 11234578888888 8999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.+|++ +++|||+..++....+.+++.+.
T Consensus 164 ~~p~l--lllDEP~~~LD~~~~~~l~~~l~ 191 (251)
T PRK14251 164 VRPKV--VLLDEPTSALDPISSSEIEETLM 191 (251)
T ss_pred cCCCE--EEecCCCccCCHHHHHHHHHHHH
Confidence 99998 99999999999987776555443
No 226
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.63 E-value=1.6e-15 Score=137.03 Aligned_cols=129 Identities=19% Similarity=0.226 Sum_probs=90.2
Q ss_pred cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCccc--------HHHHH
Q 023675 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAED--------RVENI 160 (279)
Q Consensus 92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~~--------~~~~~ 160 (279)
.++.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++... ....++|.++. ..+.+
T Consensus 9 l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l 87 (302)
T TIGR01188 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL-RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTGRENL 87 (302)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcHHHHH
Confidence 34568999999999999999999999999999999 89999999999876421 11112222211 11111
Q ss_pred HHH------------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 161 RRI------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 161 ~~v------------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
... ..+..++...++.. .+..+|+++++| .++++++.+|++ ++||||+..++....+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~~l~~ 165 (302)
T TIGR01188 88 EMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDV--LFLDEPTTGLDPRTRRAIWD 165 (302)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHH
Confidence 110 01222233333322 344588899988 999999999998 99999999999887665443
No 227
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=2.7e-15 Score=134.21 Aligned_cols=142 Identities=18% Similarity=0.206 Sum_probs=99.1
Q ss_pred CeEEeecceeecC-----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----
Q 023675 81 NILWHKNSVDKRD-----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----- 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----- 144 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL-IPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEeccccccHHH
Confidence 3677777777752 238999999999999999999999999999999 89999999999887421
Q ss_pred cccCCCCCcccH---------HHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675 145 LNRDLSFKAEDR---------VENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 145 ~~~~~~~~~~~~---------~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
....++|.+++. ...+.. ...+..++...++.. ....+|+++++| .++++++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~ 162 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMR 162 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 111223222221 000000 011112222233322 345688889888 899999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
|++ +++|||+..++......+.+.+
T Consensus 163 p~l--lllDEPt~gLD~~~~~~l~~~l 187 (280)
T PRK13633 163 PEC--IIFDEPTAMLDPSGRREVVNTI 187 (280)
T ss_pred CCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 998 9999999999999887765543
No 228
>PTZ00243 ABC transporter; Provisional
Probab=99.63 E-value=4.2e-16 Score=166.55 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=102.3
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.|+|+|++|+|..+ .||++++|+.++|||++|||||||+++|.|++ +|.+|.|++||.++.+. ++.
T Consensus 1306 ~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I~IDG~di~~i~l~~LR~ 1384 (1560)
T PTZ00243 1306 AGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEIRVNGREIGAYGLRELRR 1384 (1560)
T ss_pred CCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEcccCCHHHHHh
Confidence 4679999999999643 38999999999999999999999999999999 89999999999998531 222
Q ss_pred CCCCCccc-------HHHHH-----------HHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhCCC-
Q 023675 148 DLSFKAED-------RVENI-----------RRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSMLPE- 198 (279)
Q Consensus 148 ~~~~~~~~-------~~~~~-----------~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~~~- 198 (279)
.+++.+++ .++++ ....+.+. ... ..|+. ..+..+|+|++|| .+||+++++
T Consensus 1385 ~I~iVpQdp~LF~gTIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~ 1464 (1560)
T PTZ00243 1385 QFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKG 1464 (1560)
T ss_pred cceEECCCCccccccHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCC
Confidence 22222221 11111 11111110 010 11222 2345689999999 999999985
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHh
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++ ++|||+++.++....+.+.+.++
T Consensus 1465 ~~I--LlLDEATSaLD~~te~~Iq~~L~ 1490 (1560)
T PTZ00243 1465 SGF--ILMDEATANIDPALDRQIQATVM 1490 (1560)
T ss_pred CCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 788 99999999998887766655444
No 229
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.4e-15 Score=132.89 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=97.8
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc------c
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------L 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~------~ 145 (279)
.++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|++.. |.+|+|+++|.++... .
T Consensus 12 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 12 QIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred eEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence 5788888888864 34999999999999999999999999999999832 3799999999876321 1
Q ss_pred ccCCCCCccc-------HHHHHHHH------------HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675 146 NRDLSFKAED-------RVENIRRI------------GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 146 ~~~~~~~~~~-------~~~~~~~v------------~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
...++|.++. ..+.+... ..+...+...++ ......+|+++++| .++++++.
T Consensus 92 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~ 171 (258)
T PRK14268 92 RKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAV 171 (258)
T ss_pred hhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHc
Confidence 1112222111 11111100 011112222222 11234578889888 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|++ +++|||+..++......+++.+
T Consensus 172 ~p~l--lllDEPt~~LD~~~~~~l~~~l 197 (258)
T PRK14268 172 KPKI--ILFDEPTSALDPISTARIEDLI 197 (258)
T ss_pred CCCE--EEEeCCCcccCHHHHHHHHHHH
Confidence 9998 9999999999998877665543
No 230
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=3e-15 Score=138.12 Aligned_cols=129 Identities=23% Similarity=0.271 Sum_probs=90.6
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCccc--------HH
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAED--------RV 157 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~~--------~~ 157 (279)
+.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++... ....++|.+++ ..
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 94 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR 94 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence 459999999999999999999999999999999 89999999999876321 11112222211 11
Q ss_pred HHHHH------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 158 ENIRR------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 158 ~~~~~------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+.. -..+..++...++.. ....+|+++++| .++++++.+|++ ++||||+..++......+.+.+
T Consensus 95 enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--lLLDEPts~LD~~~~~~l~~~L 171 (352)
T PRK11144 95 GNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPEL--LLMDEPLASLDLPRKRELLPYL 171 (352)
T ss_pred HHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence 11110 011222233333322 345688999999 999999999998 9999999999998877655433
No 231
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=3.2e-15 Score=130.03 Aligned_cols=140 Identities=19% Similarity=0.135 Sum_probs=95.2
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc-
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE- 154 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~- 154 (279)
.+++++++|.. +.+|++.+|++++|+|+||||||||+++|+|.+ .|..|.|.++|.++... ....+++.++
T Consensus 2 ~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~-~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 2 ELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE-TPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred EEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 34555665543 458999999999999999999999999999999 89999999999877421 0111221111
Q ss_pred -------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675 155 -------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (279)
Q Consensus 155 -------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~ 210 (279)
.....+.. ......++...++.. ....+++++++| .++++++.+|++ +++|||+
T Consensus 81 ~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~l--lllDEP~ 158 (232)
T cd03300 81 YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKV--LLLDEPL 158 (232)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCc
Confidence 11111110 001112222223322 234578888888 899999999998 9999999
Q ss_pred cchhccChhhHHHHH
Q 023675 211 QVCEARDPKGLYKLA 225 (279)
Q Consensus 211 ~~l~~R~~~~l~~~~ 225 (279)
..++....+.+++.+
T Consensus 159 ~gLD~~~~~~l~~~l 173 (232)
T cd03300 159 GALDLKLRKDMQLEL 173 (232)
T ss_pred ccCCHHHHHHHHHHH
Confidence 999998887766543
No 232
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3e-15 Score=132.36 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=97.6
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeeccc------c
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------G 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~~------~ 144 (279)
..++++++++.|..+ .+|++.+|++++|+|+||||||||+++|+|.+.. | .+|.|+++|.++.. .
T Consensus 11 ~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 11 EVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred ceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 357888888888643 3899999999999999999999999999999831 3 58999999987631 1
Q ss_pred cccCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l 195 (279)
....++|.++ ...+.+.. . ..+...+...++ ......+++++++| .+++++
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral 170 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL 170 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 1111222211 11111100 0 011112222232 11234578889888 899999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+|++ +++|||+..++......+.+.+
T Consensus 171 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l 198 (259)
T PRK14274 171 ATNPDV--LLMDEPTSALDPVSTRKIEELI 198 (259)
T ss_pred hcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence 999998 9999999999988777655543
No 233
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.62 E-value=2.6e-15 Score=133.93 Aligned_cols=142 Identities=18% Similarity=0.209 Sum_probs=96.5
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCC
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~ 149 (279)
.|++++++++|.. +.||.+++|++++|+|+||||||||+++|.|++ . .+|.|++||.++... +...+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~-~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 5788899888842 338999999999999999999999999999999 5 689999999887321 11112
Q ss_pred CCCcccH-------HHHHHH-----HHHHHHHHHhCCcch---------------hcccCChHHHHH-HHHHHhCCCCCc
Q 023675 150 SFKAEDR-------VENIRR-----IGEVAKLFADAGVIC---------------IACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 150 ~~~~~~~-------~~~~~~-----v~~~~~~~~~~~~~~---------------i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
++.+++. ++.+.. ..++...+...++.. .+..+++++++| .++|+++.+|++
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~i 159 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKI 159 (275)
T ss_pred EEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 2211111 111100 001111111122211 122378888888 899999999998
Q ss_pred cEEEEeCCccchhccChhhHHHHHh
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++|||+..++....+.+.+.+.
T Consensus 160 --lllDEpts~LD~~~~~~l~~~l~ 182 (275)
T cd03289 160 --LLLDEPSAHLDPITYQVIRKTLK 182 (275)
T ss_pred --EEEECccccCCHHHHHHHHHHHH
Confidence 99999999999887776665554
No 234
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.62 E-value=2.1e-15 Score=131.60 Aligned_cols=141 Identities=21% Similarity=0.253 Sum_probs=93.4
Q ss_pred EEeecceeec--------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCC
Q 023675 83 LWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLS 150 (279)
Q Consensus 83 ~~~~~~~~~~--------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~ 150 (279)
+++++++.|. ++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++
T Consensus 2 ~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred eEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 4555655553 2348999999999999999999999999999999 89999999999776311 011122
Q ss_pred CCcccH-------HHHHH---------HHHH------HHHHHHhC--Cc----chhcccCChHHHHH-HHHHHhCCCCCc
Q 023675 151 FKAEDR-------VENIR---------RIGE------VAKLFADA--GV----ICIACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 151 ~~~~~~-------~~~~~---------~v~~------~~~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
|.++.. .+.+. .+.. +...+... +. ......+|+++++| .++++++.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 222211 00000 0000 00000000 11 11234578888888 899999999998
Q ss_pred cEEEEeCCccchhccChhhHHHHHh
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++|||+..++......+++.+.
T Consensus 161 --lllDEP~~gLD~~~~~~l~~~l~ 183 (238)
T cd03249 161 --LLLDEATSALDAESEKLVQEALD 183 (238)
T ss_pred --EEEeCccccCCHHHHHHHHHHHH
Confidence 99999999999988877666554
No 235
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.62 E-value=2.6e-15 Score=137.29 Aligned_cols=141 Identities=18% Similarity=0.150 Sum_probs=98.2
Q ss_pred CeEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeecccc----
Q 023675 81 NILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG---- 144 (279)
Q Consensus 81 ~i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~~---- 144 (279)
.++++|+++.|. ++.||++.+|++++|+|+||||||||+++|+|++ .|. +|.|+++|.++...
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~-~p~~~~sG~I~~~G~~i~~~~~~~ 90 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL-AANGRIGGSATFNGREILNLPEKE 90 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCCCCeEEEECCEECCcCCHHH
Confidence 467888877774 2349999999999999999999999999999999 665 99999999987321
Q ss_pred ---c-ccCCCCCcccH----------HHHHH-------------HHHHHHHHHHhCCcc-------hhcccCChHHHHH-
Q 023675 145 ---L-NRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI-------CIACLISPYRKDR- 189 (279)
Q Consensus 145 ---~-~~~~~~~~~~~----------~~~~~-------------~v~~~~~~~~~~~~~-------~i~~~~~~~~~~r- 189 (279)
+ ...+++.+++. ..++. ....+..++...++. .....+|+++++|
T Consensus 91 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv 170 (330)
T PRK09473 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRV 170 (330)
T ss_pred HHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHH
Confidence 0 11233222221 01000 001122223333332 1344588999999
Q ss_pred HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 190 ~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
.++++++.+|++ +++|||+..++......+++.
T Consensus 171 ~IArAL~~~P~l--lilDEPts~LD~~~~~~i~~l 203 (330)
T PRK09473 171 MIAMALLCRPKL--LIADEPTTALDVTVQAQIMTL 203 (330)
T ss_pred HHHHHHHcCCCE--EEEeCCCccCCHHHHHHHHHH
Confidence 999999999998 999999999998887765543
No 236
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.6e-15 Score=133.85 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=98.1
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--c--CCccEEEEcCeecccc------
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG------ 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~--~~~G~i~ldgd~i~~~------ 144 (279)
..+++++++++|.. +.+|++.+|++++|+|+||||||||+++|+|++. . |.+|.|.++|.++...
T Consensus 38 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~ 117 (286)
T PRK14275 38 PHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVL 117 (286)
T ss_pred eEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHH
Confidence 35788898888864 3489999999999999999999999999999862 2 4899999999876311
Q ss_pred cccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l 195 (279)
....++|.+++ ..+.+.. . ..+...+...++ ...+..+|+++++| .+++++
T Consensus 118 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 118 LRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred hhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 11122221111 1111110 0 011111222222 12345688899988 899999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+.+|++ ++||||+..++......+++.++
T Consensus 198 ~~~p~l--llLDEPt~gLD~~~~~~l~~~L~ 226 (286)
T PRK14275 198 AVEPEI--LLLDEPTSALDPKATAKIEDLIQ 226 (286)
T ss_pred hcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 999998 99999999999887776655443
No 237
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.9e-15 Score=131.03 Aligned_cols=143 Identities=16% Similarity=0.169 Sum_probs=95.8
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeeccc------cc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------GL 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~~------~~ 145 (279)
.++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+.. | ++|.|+++|.++.. ..
T Consensus 4 ~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 4 KVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 4677888888754 34899999999999999999999999999999831 3 58999999987632 11
Q ss_pred ccCCCCCcc--------cHHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHh
Q 023675 146 NRDLSFKAE--------DRVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 146 ~~~~~~~~~--------~~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l 195 (279)
...++|.++ ...+.+.. . ..+...+...++. ..+..+|+++++| .+++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 111111111 11111110 0 0111222222321 1244578888888 899999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+|++ +++|||+..++....+.+++.+
T Consensus 164 ~~~p~l--lllDEP~~gLD~~~~~~l~~~l 191 (252)
T PRK14256 164 AVKPEV--ILMDEPASALDPISTLKIEELI 191 (252)
T ss_pred hcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence 999988 9999999999988776655443
No 238
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.9e-15 Score=132.26 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=98.8
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------c
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------G 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~ 144 (279)
..+++++++++|.++ .||++.+|++++|+|+||||||||+++|+|++.. |.+|+|+++|.++.. .
T Consensus 19 ~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 98 (267)
T PRK14237 19 IALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYE 98 (267)
T ss_pred eEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHH
Confidence 458889998888643 4999999999999999999999999999999842 579999999988732 0
Q ss_pred cccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l 195 (279)
....++|.+++ ..+.+.. . ..+...+...++ ......+|+++++| .+++++
T Consensus 99 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral 178 (267)
T PRK14237 99 MRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178 (267)
T ss_pred HhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 11122222221 1111111 0 011111222222 11234578888888 899999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+|++ ++||||+..++......+.+.+
T Consensus 179 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l 206 (267)
T PRK14237 179 AVKPDI--LLMDEPASALDPISTMQLEETM 206 (267)
T ss_pred hcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 999998 9999999999998777655543
No 239
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.62 E-value=3e-15 Score=129.56 Aligned_cols=146 Identities=17% Similarity=0.202 Sum_probs=99.5
Q ss_pred CCCCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675 78 KSTNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L 145 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~ 145 (279)
..+.+++++++++|.+ ..+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... .
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCCchHHcCHHHH
Confidence 3456888898888864 228999999999999999999999999999999 89999999999765311 0
Q ss_pred ccCCCCCcccH-------HHHH-------------HHHH--HHHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAEDR-------VENI-------------RRIG--EVAKLFADA--GVI----CIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~~~-------~~~~-------------~~v~--~~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~ 196 (279)
...++|.++.. .+.+ .... .....+... ++. .....+|+++++| .++++++
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 11112111110 0000 0000 001111111 221 1244578888888 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.+|++ +++|||+..++....+.+.+.++
T Consensus 167 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~ 194 (226)
T cd03248 167 RNPQV--LILDEATSALDAESEQQVQQALY 194 (226)
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 99998 99999999999988777665544
No 240
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.7e-15 Score=132.70 Aligned_cols=144 Identities=19% Similarity=0.157 Sum_probs=97.6
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccc--c--CCccEEEEcCeeccc------c
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRH------G 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~--~~~G~i~ldgd~i~~------~ 144 (279)
..++++++++.|.++ .||++.+|++++|+|+||||||||+++|+|.+. . |.+|.|.++|.++.. .
T Consensus 23 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 102 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEE 102 (271)
T ss_pred eEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHH
Confidence 358889999888643 389999999999999999999999999999983 1 689999999987631 0
Q ss_pred cccCCCCCccc-------HHHHHHH------------HHH-HHHHHHhCC----c----chhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAED-------RVENIRR------------IGE-VAKLFADAG----V----ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~~-------~~~~~~~------------v~~-~~~~~~~~~----~----~~i~~~~~~~~~~r-~~ar~l 195 (279)
....++|.+++ ..+.+.. ..+ +...+...+ + ...+..+|+++++| .+++++
T Consensus 103 ~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 103 LRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred HhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 11112221111 1111110 000 111111111 1 11234578889888 999999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+|++ +++|||+..++....+.+.+.+
T Consensus 183 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l 210 (271)
T PRK14238 183 AIEPDV--ILMDEPTSALDPISTLKVEELV 210 (271)
T ss_pred HcCCCE--EEEeCCCCcCCHHHHHHHHHHH
Confidence 999998 9999999999998877755543
No 241
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.62 E-value=4.3e-15 Score=132.08 Aligned_cols=139 Identities=19% Similarity=0.174 Sum_probs=94.5
Q ss_pred eEEeecceeec--------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---
Q 023675 82 ILWHKNSVDKR--------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--- 144 (279)
Q Consensus 82 i~~~~~~~~~~--------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--- 144 (279)
|+++++++.|. ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++...
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-SPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEeccccChh
Confidence 55667766665 2338999999999999999999999999999998 89999999999876321
Q ss_pred ----cccCCCCCcccH----------HHHH----H---------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HH
Q 023675 145 ----LNRDLSFKAEDR----------VENI----R---------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DA 191 (279)
Q Consensus 145 ----~~~~~~~~~~~~----------~~~~----~---------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ 191 (279)
....++|.+++. ...+ . ....+..++...++. .....+++++++| .+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 111122211110 0100 0 001122223333332 1234578888888 99
Q ss_pred HHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
+++++.+|++ +++|||+..++....+.+++
T Consensus 163 aral~~~p~l--llLDEPt~~LD~~~~~~~~~ 192 (268)
T PRK10419 163 ARALAVEPKL--LILDEAVSNLDLVLQAGVIR 192 (268)
T ss_pred HHHHhcCCCE--EEEeCCCcccCHHHHHHHHH
Confidence 9999999998 99999999999876665444
No 242
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=6.3e-16 Score=134.47 Aligned_cols=141 Identities=19% Similarity=0.249 Sum_probs=93.5
Q ss_pred EEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675 83 LWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF 151 (279)
Q Consensus 83 ~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~ 151 (279)
++++++++|.. ..+|++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|
T Consensus 2 ~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 2 EFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-DVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred EEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-cCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 45566666643 338999999999999999999999999999999 89999999999876321 0111111
Q ss_pred Cccc-------HHHHHH---------HHHH------HHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 152 KAED-------RVENIR---------RIGE------VAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 152 ~~~~-------~~~~~~---------~v~~------~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
.+++ ..+.+. .+.. +...+... ++. ..+..+++++++| .++++++.+|++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l- 159 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI- 159 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE-
Confidence 1110 011100 0000 01111110 111 1234578888888 999999999998
Q ss_pred EEEEeCCccchhccChhhHHHHHh
Q 023675 203 EVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+++|||+..++......+++.+.
T Consensus 160 -llLDEP~~~LD~~~~~~l~~~l~ 182 (234)
T cd03251 160 -LILDEATSALDTESERLVQAALE 182 (234)
T ss_pred -EEEeCccccCCHHHHHHHHHHHH
Confidence 99999999999988777665543
No 243
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.7e-15 Score=136.31 Aligned_cols=141 Identities=15% Similarity=0.174 Sum_probs=96.5
Q ss_pred eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc---CCccEEEEcCeecccc----c
Q 023675 82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG----L 145 (279)
Q Consensus 82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~---~~~G~i~ldgd~i~~~----~ 145 (279)
++++|+++.|. ++.||++++|++++|+|+||||||||+++|+|++.. +++|.|+++|.++... +
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 56667766663 344999999999999999999999999999999842 5789999999887321 0
Q ss_pred ----ccCCCCCcccH----------HHHHH------------------HHHHHHHHHHhCCcc-------hhcccCChHH
Q 023675 146 ----NRDLSFKAEDR----------VENIR------------------RIGEVAKLFADAGVI-------CIACLISPYR 186 (279)
Q Consensus 146 ----~~~~~~~~~~~----------~~~~~------------------~v~~~~~~~~~~~~~-------~i~~~~~~~~ 186 (279)
...++|.+++. .+.+. ....+..++...++. .....+|+++
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~ 163 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE 163 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 11222222211 00000 001122333334442 2344688999
Q ss_pred HHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 187 KDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 187 ~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++| .++++++.+|++ +++|||+..++......+.+.
T Consensus 164 ~QRv~iArAL~~~P~l--lilDEPts~LD~~~~~~i~~l 200 (330)
T PRK15093 164 CQKVMIAIALANQPRL--LIADEPTNAMEPTTQAQIFRL 200 (330)
T ss_pred HHHHHHHHHHHCCCCE--EEEeCCCCcCCHHHHHHHHHH
Confidence 999 999999999998 999999999998877665543
No 244
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.62 E-value=2e-15 Score=125.78 Aligned_cols=130 Identities=16% Similarity=0.236 Sum_probs=87.1
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCccc--------HHHHHH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKAED--------RVENIR 161 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~~~--------~~~~~~ 161 (279)
.+.||++..|++++|.|+|||||||+++.|+.+| .|++|.|++||-+..+. ....++....+ -++++.
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL-~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~ 97 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL-IPDSGKVTIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLK 97 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhc-cCCCceEEEeecccccChHHHhhhcceecCCcChhhhhhHHHHHH
Confidence 4559999999999999999999999999999999 99999999999876321 12222222211 112221
Q ss_pred HHHH------------HHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 162 RIGE------------VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 162 ~v~~------------~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
.... ++.+....++.. -....|.+.+++ .+||+++++|.+ +++|||++.++-+..+.+.+-
T Consensus 98 ~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i--~vlDEP~sGLDi~~~r~~~df 175 (245)
T COG4555 98 YFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSI--LVLDEPTSGLDIRTRRKFHDF 175 (245)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCe--EEEcCCCCCccHHHHHHHHHH
Confidence 1111 111111112222 122345556666 999999999988 999999999998877665443
Q ss_pred H
Q 023675 225 A 225 (279)
Q Consensus 225 ~ 225 (279)
+
T Consensus 176 i 176 (245)
T COG4555 176 I 176 (245)
T ss_pred H
Confidence 3
No 245
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.62 E-value=9.8e-15 Score=129.08 Aligned_cols=140 Identities=22% Similarity=0.177 Sum_probs=94.2
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK 152 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~ 152 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|.
T Consensus 3 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 3 LEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-SPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 566677777754 348999999999999999999999999999999 89999999999876321 00111111
Q ss_pred cc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhC------CCCCc
Q 023675 153 AE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSML------PEGDF 201 (279)
Q Consensus 153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~------~~~~~ 201 (279)
++ ...+.+.. -.....++...++.. .+..+|+++++| .++++++ .+|++
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 11 11111100 001122222233322 344688899988 8999999 47788
Q ss_pred cEEEEeCCccchhccChhhHHHH
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||+..++......+.+.
T Consensus 162 --llLDEPt~~LD~~~~~~l~~~ 182 (258)
T PRK13548 162 --LLLDEPTSALDLAHQHHVLRL 182 (258)
T ss_pred --EEEeCCcccCCHHHHHHHHHH
Confidence 999999999998877665443
No 246
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=6.4e-15 Score=130.71 Aligned_cols=146 Identities=17% Similarity=0.191 Sum_probs=98.4
Q ss_pred CCCCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeecc---c--
Q 023675 78 KSTNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCR---H-- 143 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~---~-- 143 (279)
..+.|++++++++|.. +.+|++++|++++|+|+||||||||+++|+|++.. | .+|.|.++|.++. .
T Consensus 13 ~~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 13 TQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CCceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 3467889999988864 33899999999999999999999999999999832 2 6899999987542 0
Q ss_pred ---ccccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HH
Q 023675 144 ---GLNRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DA 191 (279)
Q Consensus 144 ---~~~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ 191 (279)
.....++|.+++ ..+.+.. . ......+...++. .....+++++++| .+
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~l 172 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHH
Confidence 111122222221 1111110 0 1111222222221 1234578888888 89
Q ss_pred HHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++++.+|++ +++|||+..++....+.+++.+
T Consensus 173 aral~~~p~l--lllDEPt~gLD~~~~~~l~~~l 204 (265)
T PRK14252 173 ARALATDPEI--LLFDEPTSALDPIATASIEELI 204 (265)
T ss_pred HHHHHcCCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence 9999999998 9999999999988777655543
No 247
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1.4e-15 Score=124.45 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=81.6
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhC
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADA 173 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 173 (279)
..++++.+|++++|+|+||||||||+++|++.+ .+..|.++++|.++... ... . ....
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~-~~~~G~i~~~~~~~~~~-------~~~---~----------~~~~- 74 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL-KPTSGEILIDGKDIAKL-------PLE---E----------LRRR- 74 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccC-------CHH---H----------HHhc-
Confidence 448999999999999999999999999999999 78999999999877421 000 0 0000
Q ss_pred CcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 174 GVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 174 ~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+...+++++++| .++++++.++++ +++|||+..++.+....+.+.+
T Consensus 75 --i~~~~qlS~G~~~r~~l~~~l~~~~~i--~ilDEp~~~lD~~~~~~l~~~l 123 (157)
T cd00267 75 --IGYVPQLSGGQRQRVALARALLLNPDL--LLLDEPTSGLDPASRERLLELL 123 (157)
T ss_pred --eEEEeeCCHHHHHHHHHHHHHhcCCCE--EEEeCCCcCCCHHHHHHHHHHH
Confidence 11111177788888 889999999988 9999999999988776655543
No 248
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=3.4e-15 Score=133.40 Aligned_cols=142 Identities=14% Similarity=0.154 Sum_probs=98.7
Q ss_pred CeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675 81 NILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD 148 (279)
Q Consensus 81 ~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~ 148 (279)
.+++++++++|.. +.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-EEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEECCcCCHHHHhcc
Confidence 3677788887752 238999999999999999999999999999999 89999999999876421 1112
Q ss_pred CCCCcccH---------HHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 149 LSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 149 ~~~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
++|.+++. .+.+.. . ..+...+...++.. ....+|+++++| .++++++.+|++
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~l- 161 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEI- 161 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence 23322221 111110 0 01111222223322 234588888888 899999999998
Q ss_pred EEEEeCCccchhccChhhHHHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+++|||+..++....+.+++.+
T Consensus 162 -lllDEPt~~LD~~~~~~l~~~l 183 (277)
T PRK13642 162 -IILDESTSMLDPTGRQEIMRVI 183 (277)
T ss_pred -EEEeCCcccCCHHHHHHHHHHH
Confidence 9999999999998877765543
No 249
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.61 E-value=2.5e-15 Score=131.81 Aligned_cols=141 Identities=18% Similarity=0.067 Sum_probs=93.1
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeecccc-----cccCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHG-----LNRDLS 150 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~-----~~~~~~ 150 (279)
++++++++.|.. +.||++++|++++|+|+||||||||+++|+|.+. .|.+|.|+++|.++... ....++
T Consensus 2 i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (248)
T PRK09580 2 LSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIF 81 (248)
T ss_pred eEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceE
Confidence 456677666653 4499999999999999999999999999999952 68999999999876321 011122
Q ss_pred CCcccH--------HHHH----------------HH--HHH-HHHHHHhCCcc----h-hc-ccCChHHHHH-HHHHHhC
Q 023675 151 FKAEDR--------VENI----------------RR--IGE-VAKLFADAGVI----C-IA-CLISPYRKDR-DACRSML 196 (279)
Q Consensus 151 ~~~~~~--------~~~~----------------~~--v~~-~~~~~~~~~~~----~-i~-~~~~~~~~~r-~~ar~l~ 196 (279)
+.++.. .... .. ... +...+...++. . .. ..+|+++++| .++++++
T Consensus 82 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (248)
T PRK09580 82 MAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAV 161 (248)
T ss_pred EEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHH
Confidence 211110 0000 00 000 00111111211 1 12 2588888888 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
.+|++ +++|||+..++....+.+.+.
T Consensus 162 ~~p~i--llLDEPt~~LD~~~~~~l~~~ 187 (248)
T PRK09580 162 LEPEL--CILDESDSGLDIDALKIVADG 187 (248)
T ss_pred cCCCE--EEEeCCCccCCHHHHHHHHHH
Confidence 99998 999999999999887766543
No 250
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=4.5e-15 Score=121.77 Aligned_cols=138 Identities=20% Similarity=0.217 Sum_probs=92.5
Q ss_pred eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH
Q 023675 82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (279)
Q Consensus 82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~ 156 (279)
++.+++.-+|. .+.|++..+|.+|.|+|.|||||||++++|.=+- .|..|.|.++|..++-.....=.+.+.+.
T Consensus 7 l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE-~P~~G~I~v~geei~~k~~~~G~l~~ad~ 85 (256)
T COG4598 7 LEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSAGSIRVNGEEIRLKRDKDGQLKPADK 85 (256)
T ss_pred eehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhc-CCCCceEEECCeEEEeeeCCCCCeeeCCH
Confidence 34444444444 4569999999999999999999999999997655 99999999999988522111111111111
Q ss_pred H---HHHHH---HHH--------------------------------HHHHHHhCCcc----hhcccCChHHHHH-HHHH
Q 023675 157 V---ENIRR---IGE--------------------------------VAKLFADAGVI----CIACLISPYRKDR-DACR 193 (279)
Q Consensus 157 ~---~~~~~---v~~--------------------------------~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar 193 (279)
+ +.+.+ +.| ...++..-|+. .+...+++++++| +++|
T Consensus 86 ~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIAR 165 (256)
T COG4598 86 RQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIAR 165 (256)
T ss_pred HHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHH
Confidence 1 11000 000 11111111211 2556789999999 8999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
+++-+|++ +++|+|++.+++.+....+
T Consensus 166 aLameP~v--mLFDEPTSALDPElVgEVL 192 (256)
T COG4598 166 ALAMEPEV--MLFDEPTSALDPELVGEVL 192 (256)
T ss_pred HHhcCCce--EeecCCcccCCHHHHHHHH
Confidence 99999988 9999999999999877644
No 251
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=3.7e-15 Score=133.45 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=98.4
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCc---cEEEEcCeecccc----cc
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK---LTYILDGDNCRHG----LN 146 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~---G~i~ldgd~i~~~----~~ 146 (279)
.++++++++.|.. ..+|++++|++++|+|+||||||||+++|+|++ .|.+ |.|+++|.++... ..
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~-~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLL-LPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhccc-CCCCCCCcEEEECCEECCcCCHHHHH
Confidence 4678888888853 228999999999999999999999999999999 7776 8999999887421 11
Q ss_pred cCCCCCcccH---------HHHHHH-----------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675 147 RDLSFKAEDR---------VENIRR-----------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 147 ~~~~~~~~~~---------~~~~~~-----------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
..++|.+++. .+.+.. . ..+..++...++.. ....+|+++++| .++++++.+|+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~ 163 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPK 163 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1223322221 111110 0 01112222333322 234588888888 89999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHH
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+ +++|||+..++....+.+.+.+
T Consensus 164 l--lllDEPt~gLD~~~~~~l~~~l 186 (282)
T PRK13640 164 I--IILDESTSMLDPAGKEQILKLI 186 (282)
T ss_pred E--EEEECCcccCCHHHHHHHHHHH
Confidence 8 9999999999998877655443
No 252
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.61 E-value=3.5e-15 Score=143.81 Aligned_cols=140 Identities=18% Similarity=0.225 Sum_probs=97.5
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~ 151 (279)
+++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|.+ .|++|.|+++|.++... ....++|
T Consensus 5 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 5 LQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY-TRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 677777777754 349999999999999999999999999999999 89999999999876311 0111121
Q ss_pred Cccc--------HHHHH---------------H-HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 152 KAED--------RVENI---------------R-RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 152 ~~~~--------~~~~~---------------~-~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
.+++ ..+.+ . ....+..++...++. ..+..+|+++++| .++++++.+|++
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l- 162 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKV- 162 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCE-
Confidence 1111 00000 0 001122223333332 2345688999999 999999999998
Q ss_pred EEEEeCCccchhccChhhHHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||++.++......+++.
T Consensus 163 -llLDEPt~~LD~~~~~~l~~~ 183 (501)
T PRK10762 163 -IIMDEPTDALTDTETESLFRV 183 (501)
T ss_pred -EEEeCCcCCCCHHHHHHHHHH
Confidence 999999999999887765543
No 253
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6.1e-16 Score=141.09 Aligned_cols=145 Identities=20% Similarity=0.250 Sum_probs=107.2
Q ss_pred CCCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----cccc
Q 023675 78 KSTNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNR 147 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~ 147 (279)
..+.+.|.++.|.|..+. ||.+++|++++++|+||+||||++++|-|+| ++.+|.|.+||.+++. .++.
T Consensus 259 ~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D~~sG~I~id~qdir~vtq~slR~ 337 (497)
T COG5265 259 RLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-DVNSGSITIDGQDIRDVTQQSLRR 337 (497)
T ss_pred ccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-CCcCceEEEcchhHHHhHHHHHHH
Confidence 346789999999997543 9999999999999999999999999999999 9999999999999863 2333
Q ss_pred CCCCCcccHH--------------------HH--HHHHHHHHHHHH------hCCcchhcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAEDRV--------------------EN--IRRIGEVAKLFA------DAGVICIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~~~~--------------------~~--~~~v~~~~~~~~------~~~~~~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.++..+++.. +. .....++...+. +.++...+-.++++++|| +++|.++++
T Consensus 338 aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~ 417 (497)
T COG5265 338 AIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKN 417 (497)
T ss_pred HhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcC
Confidence 3444443210 00 011112222211 123333455688999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
|++ +++||.++.|+.+-.+.+...+
T Consensus 418 p~i--l~~deatsaldt~te~~iq~~l 442 (497)
T COG5265 418 PPI--LILDEATSALDTHTEQAIQAAL 442 (497)
T ss_pred CCE--EEEehhhhHhhhhHHHHHHHHH
Confidence 988 9999999999999887766543
No 254
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=8.8e-15 Score=130.35 Aligned_cols=144 Identities=22% Similarity=0.181 Sum_probs=98.2
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------c
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------G 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~ 144 (279)
..++++++++.|.++ .+|.+++|++++|+|+||||||||+++|+|++.. |.+|.|+++|.++.. .
T Consensus 24 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~ 103 (272)
T PRK14236 24 TALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAE 103 (272)
T ss_pred cEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHH
Confidence 458899999988643 3899999999999999999999999999999842 479999999987642 0
Q ss_pred cccCCCCCcc-------cHHHHHHHH-------------HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAE-------DRVENIRRI-------------GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~v-------------~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l 195 (279)
....++|.++ ...+.+... ..+...+...++. .....+++++++| .+++++
T Consensus 104 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 104 LRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 1111222111 111111100 0011112222221 1234578888888 999999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+|++ +++|||+..++....+.+.+.+
T Consensus 184 ~~~p~l--llLDEPt~gLD~~~~~~l~~~L 211 (272)
T PRK14236 184 AIEPEV--LLLDEPTSALDPISTLKIEELI 211 (272)
T ss_pred HCCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 999998 9999999999988776655443
No 255
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.61 E-value=5.6e-15 Score=127.96 Aligned_cols=128 Identities=20% Similarity=0.100 Sum_probs=87.5
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-cHHHHHH-----------
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-DRVENIR----------- 161 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-~~~~~~~----------- 161 (279)
+.+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... .....+.+. ...+.+.
T Consensus 40 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~~~-~~~~~~~~~~tv~enl~~~~~~~~~~~~ 117 (224)
T cd03220 40 DVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PPDSGTVTVRGRVSSLL-GLGGGFNPELTGRENIYLNGRLLGLSRK 117 (224)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEchhh-cccccCCCCCcHHHHHHHHHHHcCCCHH
Confidence 448999999999999999999999999999999 89999999999875311 111111111 0001100
Q ss_pred H-HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 162 R-IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 162 ~-v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
. ......++...++. ..+..+|+++++| .++++++.+|++ +++|||+..++....+.+++.+
T Consensus 118 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~l--lllDEP~~gLD~~~~~~~~~~l 185 (224)
T cd03220 118 EIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDI--LLIDEVLAVGDAAFQEKCQRRL 185 (224)
T ss_pred HHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 0 00111122222221 2345688889888 899999999998 9999999999988766655543
No 256
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.61 E-value=9.7e-16 Score=162.71 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=55.4
Q ss_pred CCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE-cCeecc
Q 023675 80 TNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL-DGDNCR 142 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l-dgd~i~ 142 (279)
..|++++++|+|+.+ .||++++|++++|+|+||||||||+++|+|++ +|.+|.|++ ||.++.
T Consensus 381 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 381 KKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDIIINDSHNLK 451 (1466)
T ss_pred CcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeEEEeCCcchh
Confidence 479999999999742 28999999999999999999999999999999 899999999 466663
No 257
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.61 E-value=5.3e-15 Score=130.99 Aligned_cols=142 Identities=18% Similarity=0.208 Sum_probs=96.1
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeecccc--------
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG-------- 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~~-------- 144 (279)
.++++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|.+ .|+ +|.|+++|.++...
T Consensus 4 ~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI-TGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCCceEEEECCEecccccccchhHH
Confidence 3677788777753 349999999999999999999999999999998 554 59999999876320
Q ss_pred -cccCCCCCccc--------HHHHHH--------------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-H
Q 023675 145 -LNRDLSFKAED--------RVENIR--------------------RIGEVAKLFADAGVI----CIACLISPYRKDR-D 190 (279)
Q Consensus 145 -~~~~~~~~~~~--------~~~~~~--------------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~ 190 (279)
....++|.++. ..+.+. ....+...+...++. .....+|+++++| .
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ 162 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVA 162 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHH
Confidence 01111111111 011110 001112222223332 1344578889888 8
Q ss_pred HHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++++++.+|++ +++|||+..++....+.+.+.+
T Consensus 163 laral~~~p~l--lllDEPt~~LD~~~~~~l~~~l 195 (262)
T PRK09984 163 IARALMQQAKV--ILADEPIASLDPESARIVMDTL 195 (262)
T ss_pred HHHHHhcCCCE--EEecCccccCCHHHHHHHHHHH
Confidence 99999999998 9999999999998877655443
No 258
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=7.3e-15 Score=134.23 Aligned_cols=145 Identities=19% Similarity=0.159 Sum_probs=100.0
Q ss_pred CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc----
Q 023675 79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH---- 143 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~---- 143 (279)
.+.|++++++++|.. +.||++++|++++|+|+||||||||+++|+|++.. |.+|.|.+||.++..
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 457899999999953 23899999999999999999999999999999842 568999999998842
Q ss_pred --ccccCCCCCccc-------HHHHHHH-----------H-H-HHHHHHHhCCc--------chhcccCChHHHHH-HHH
Q 023675 144 --GLNRDLSFKAED-------RVENIRR-----------I-G-EVAKLFADAGV--------ICIACLISPYRKDR-DAC 192 (279)
Q Consensus 144 --~~~~~~~~~~~~-------~~~~~~~-----------v-~-~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~a 192 (279)
.+...+++.++. .++++.. . . .....+...++ ...+..+|+++++| .++
T Consensus 158 ~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LA 237 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIA 237 (329)
T ss_pred hHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHH
Confidence 112222222211 1111110 0 0 00111122221 22345688999999 999
Q ss_pred HHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 193 r~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
|+++.+|++ +++|+|++.++....+.+.+.+
T Consensus 238 RAl~~~p~I--lLLDEPts~LD~~~~~~i~~~i 268 (329)
T PRK14257 238 RAIALEPEV--LLMDEPTSALDPIATAKIEELI 268 (329)
T ss_pred HHHHhCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 999999998 9999999999988766654433
No 259
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=5.4e-15 Score=129.94 Aligned_cols=142 Identities=17% Similarity=0.176 Sum_probs=95.2
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------ccc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLN 146 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~~ 146 (279)
++++++++.|.+ +.+|++.+|++++|+|+||||||||+++|+|++.. +.+|.|+++|.++.. ...
T Consensus 4 l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~ 83 (250)
T PRK14262 4 IEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYR 83 (250)
T ss_pred EEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhh
Confidence 677788777754 33899999999999999999999999999999832 379999999987631 111
Q ss_pred cCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675 147 RDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 147 ~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
..++|.++ ...+.+.. . ..+...+...++ ...+..+|+++++| .++++++.
T Consensus 84 ~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~ 163 (250)
T PRK14262 84 KKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAV 163 (250)
T ss_pred hhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhC
Confidence 11222111 11111110 0 001111222222 11234578888888 89999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|++ +++|||+..++......+.+.+
T Consensus 164 ~p~l--lllDEP~~~LD~~~~~~l~~~l 189 (250)
T PRK14262 164 EPEV--ILLDEPTSALDPIATQRIEKLL 189 (250)
T ss_pred CCCE--EEEeCCccccCHHHHHHHHHHH
Confidence 9998 9999999999988776655543
No 260
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.61 E-value=3.7e-15 Score=143.90 Aligned_cols=142 Identities=17% Similarity=0.201 Sum_probs=99.8
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~ 150 (279)
.+++++++++|.+ +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....++
T Consensus 11 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 4778888888864 349999999999999999999999999999999 89999999999876321 001122
Q ss_pred CCccc--------HHHHHH-------H-HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675 151 FKAED--------RVENIR-------R-IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (279)
Q Consensus 151 ~~~~~--------~~~~~~-------~-v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p 209 (279)
|.+++ ..+.+. . ...+...+...++. ..+..+|+++++| .++++++.+|++ ++||||
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~l--llLDEP 167 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRI--LILDEP 167 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECC
Confidence 22211 011110 0 01122223333332 2345688999999 999999999998 999999
Q ss_pred ccchhccChhhHHHHH
Q 023675 210 LQVCEARDPKGLYKLA 225 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~~ 225 (279)
++.++......+++.+
T Consensus 168 t~~LD~~~~~~l~~~l 183 (510)
T PRK15439 168 TASLTPAETERLFSRI 183 (510)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999998877755543
No 261
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=6.8e-15 Score=131.38 Aligned_cols=146 Identities=14% Similarity=0.166 Sum_probs=99.7
Q ss_pred CCCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc-----
Q 023675 79 STNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG----- 144 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~----- 144 (279)
...+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++.. |.+|.|+++|.++...
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 346788999999864 34999999999999999999999999999999832 4799999999876321
Q ss_pred cccCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l 195 (279)
....++|.++ ...+.+.. . ......+...++. ..+..+|+++++| .+++++
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral 178 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTL 178 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1111222221 11111110 0 0011222223332 1234578889888 899999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+.+|++ +++|||+..++....+.+++.+.
T Consensus 179 ~~~p~l--llLDEPt~~LD~~~~~~l~~~L~ 207 (276)
T PRK14271 179 AVNPEV--LLLDEPTSALDPTTTEKIEEFIR 207 (276)
T ss_pred hcCCCE--EEEcCCcccCCHHHHHHHHHHHH
Confidence 999988 99999999999887776655443
No 262
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.61 E-value=5.1e-15 Score=118.11 Aligned_cols=157 Identities=24% Similarity=0.321 Sum_probs=121.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCCCCCcccHHHHHHHHHHHHHHHHhCCcch
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC 177 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (279)
-++.++|.+||||||++++|...|..+ ++|||++.. .+...+.+.++++..|+..+......-...+-.+
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~-----F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~v 87 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLK-----FIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGV 87 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCc-----ccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeE
Confidence 488999999999999999999999766 999999953 4566788999999999888777665544567777
Q ss_pred hcccCChHHHHHHHHHHhCC--------CCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccc---cCcCCCCCCC
Q 023675 178 IACLISPYRKDRDACRSMLP--------EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGI---DDPYEPPLNC 246 (279)
Q Consensus 178 i~~~~~~~~~~r~~ar~l~~--------~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~---r~~~~~~~~a 246 (279)
+.++.+...+.|+++|..++ +..+.+++|..+.+.+.+|+ .-+.+++.....+ .+.++.|+..
T Consensus 88 VlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl------~~R~gHFMp~~lleSQf~~LE~p~~~ 161 (191)
T KOG3354|consen 88 VLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRL------KKRKGHFMPADLLESQFATLEAPDAD 161 (191)
T ss_pred EEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHH------hhcccccCCHHHHHHHHHhccCCCCC
Confidence 88899999999999998655 22455699999999999998 4456776654444 3445666533
Q ss_pred c---eEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 247 E---IVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 247 ~---~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
+ +.|+. .+.+++++++.|++.+..
T Consensus 162 e~div~isv---~~~~~e~iv~tI~k~~~~ 188 (191)
T KOG3354|consen 162 EEDIVTISV---KTYSVEEIVDTIVKMVAL 188 (191)
T ss_pred ccceEEEee---ccCCHHHHHHHHHHHHHh
Confidence 3 55665 568999999999988754
No 263
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=6.3e-15 Score=129.65 Aligned_cols=143 Identities=18% Similarity=0.159 Sum_probs=95.3
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------cc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GL 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~ 145 (279)
.++++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|.+.. +.+|.|+++|.++.. ..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 4 KMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence 3567777777753 34899999999999999999999999999999832 278999999988732 01
Q ss_pred ccCCCCCcc-------cHHHHHHH-------------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAE-------DRVENIRR-------------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~-------~~~~~~~~-------------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
...++|.++ ...+.+.. ...+...+...++ ......+|+++++| .++++++
T Consensus 84 ~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 163 (251)
T PRK14270 84 RKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIA 163 (251)
T ss_pred HhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 111222111 11111110 0011112222222 11344678888888 8999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ +++|||+..++......+++.+
T Consensus 164 ~~p~l--lllDEP~~~LD~~~~~~l~~~L 190 (251)
T PRK14270 164 VKPDV--ILMDEPTSALDPISTLKIEDLM 190 (251)
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 99998 9999999999988776655443
No 264
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=4.1e-15 Score=117.97 Aligned_cols=151 Identities=27% Similarity=0.376 Sum_probs=118.1
Q ss_pred EcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccC
Q 023675 108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLI 182 (279)
Q Consensus 108 vG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~ 182 (279)
+|.+||||||++..|+..+... ++|||++.. .+...+.+.++++..|+..+...+......+...++.+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~-----fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CS 75 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAK-----FIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACS 75 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCc-----eecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecH
Confidence 5899999999999999999654 999999863 356778899999999999988776665555556788888
Q ss_pred ChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCcccc---CcCCCCCCCceEEEccCCCCCC
Q 023675 183 SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID---DPYEPPLNCEIVLKQMGDDCPS 259 (279)
Q Consensus 183 ~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r---~~~~~~~~a~~~i~~~~~~~~~ 259 (279)
...++.|+++|....+-.| |||+.+.+.+.+|. ..++|++.....+. ..+++|...+-+|.. | ...+
T Consensus 76 ALKr~YRD~LR~~~~~~~F--v~L~g~~~~i~~Rm------~~R~gHFM~~~ll~SQfa~LE~P~~de~vi~i-d-i~~~ 145 (161)
T COG3265 76 ALKRSYRDLLREANPGLRF--VYLDGDFDLILERM------KARKGHFMPASLLDSQFATLEEPGADEDVLTI-D-IDQP 145 (161)
T ss_pred HHHHHHHHHHhccCCCeEE--EEecCCHHHHHHHH------HhcccCCCCHHHHHHHHHHhcCCCCCCCEEEe-e-CCCC
Confidence 8888999999987766455 99999999999999 56788887655554 445667533322222 1 4678
Q ss_pred HHHHHHHHHHHHHh
Q 023675 260 PADMVETVVSYLDE 273 (279)
Q Consensus 260 ~~e~~~~Il~~l~~ 273 (279)
+++++.+++..++.
T Consensus 146 ~e~vv~~~~~~l~~ 159 (161)
T COG3265 146 PEEVVAQALAWLKE 159 (161)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998875
No 265
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=7e-15 Score=129.36 Aligned_cols=142 Identities=20% Similarity=0.184 Sum_probs=95.5
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-----ccEEEEcCeeccc------c
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRH------G 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-----~G~i~ldgd~i~~------~ 144 (279)
.++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|++ .|. +|.|+++|.++.. .
T Consensus 4 ~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMN-DIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CccccCCcccEEEECCEEccccccChHH
Confidence 4677787777754 348999999999999999999999999999998 665 6999999987632 1
Q ss_pred cccCCCCCcc-------cHHHHHHH------------HHH-HHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKAE-------DRVENIRR------------IGE-VAKLFADAGV--------ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~~-------~~~~~~~~------------v~~-~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l 195 (279)
....++|.++ ...+.+.. ..+ +...+...++ ......+++++++| .+++++
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1111221111 11111100 000 1111111221 12344588899888 899999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+|++ +++|||+..++......+++.+
T Consensus 163 ~~~p~l--llLDEPt~~LD~~~~~~l~~~l 190 (251)
T PRK14249 163 AIEPEV--ILMDEPCSALDPVSTMRIEELM 190 (251)
T ss_pred hcCCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence 999998 9999999999988877655543
No 266
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.60 E-value=6.4e-15 Score=127.61 Aligned_cols=142 Identities=19% Similarity=0.249 Sum_probs=94.2
Q ss_pred eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc---CCccEEEEcCeecccc-cccC
Q 023675 82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW---RGKLTYILDGDNCRHG-LNRD 148 (279)
Q Consensus 82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~---~~~G~i~ldgd~i~~~-~~~~ 148 (279)
+.|+++++.|+. +.||++++|++++|+|+||||||||+++|+|.+ . |.+|.|+++|.++... ....
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~-~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRV-EGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCcc-CCCCCCceEEEECCEECChHHhccc
Confidence 345666666643 339999999999999999999999999999999 6 8899999999876311 1111
Q ss_pred CCCCcc--------cHHHHHHHH---------------HHHHH-HHHhCCcch----hcccCChHHHHH-HHHHHhCCCC
Q 023675 149 LSFKAE--------DRVENIRRI---------------GEVAK-LFADAGVIC----IACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 149 ~~~~~~--------~~~~~~~~v---------------~~~~~-~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
+++.++ ...+.+... ..... .+...++.. ....+|+++++| .++++++.+|
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 111111 111111100 00011 122222211 234578888888 8999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ +++|||+..++....+.+.+.+.
T Consensus 163 ~i--lllDEP~~gLD~~~~~~~~~~l~ 187 (226)
T cd03234 163 KV--LILDEPTSGLDSFTALNLVSTLS 187 (226)
T ss_pred CE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence 88 99999999999988777655443
No 267
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=7e-15 Score=129.34 Aligned_cols=142 Identities=20% Similarity=0.222 Sum_probs=93.9
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc------cc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH------GL 145 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~------~~ 145 (279)
++++++++.|.+ +.||++++|++++|+|+||||||||+++|+|.+ .| .+|.|+++|.++.. ..
T Consensus 5 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 5 LSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMH-DLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 456677666653 348999999999999999999999999999998 54 37999999987632 11
Q ss_pred ccCCCCCcc--------cHHHHHHH------------HHH-HHHHHHhCCc--------chhcccCChHHHHH-HHHHHh
Q 023675 146 NRDLSFKAE--------DRVENIRR------------IGE-VAKLFADAGV--------ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 146 ~~~~~~~~~--------~~~~~~~~------------v~~-~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l 195 (279)
...++|.++ ...+.+.. ..+ ....+...+. ...+..+|+++++| .+++++
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 111222111 11111110 000 0111111111 12344588899888 899999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+.+|++ +++|||+..++....+.+++.++
T Consensus 164 ~~~p~l--lllDEP~~~LD~~~~~~l~~~l~ 192 (252)
T PRK14272 164 AVEPEI--LLMDEPTSALDPASTARIEDLMT 192 (252)
T ss_pred hcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 999998 99999999999887766555433
No 268
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.60 E-value=6.7e-15 Score=127.22 Aligned_cols=130 Identities=16% Similarity=0.228 Sum_probs=86.8
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe----ecccc--------cccCCCCCcccH-----
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRHG--------LNRDLSFKAEDR----- 156 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd----~i~~~--------~~~~~~~~~~~~----- 156 (279)
+.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|++++. ++... ....++|.+++.
T Consensus 26 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 104 (224)
T TIGR02324 26 NVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-LPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPR 104 (224)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccccCCC
Confidence 348999999999999999999999999999999 899999999842 32100 001112111110
Q ss_pred ---HHHHH-----------H-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675 157 ---VENIR-----------R-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (279)
Q Consensus 157 ---~~~~~-----------~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~ 215 (279)
.+.+. . .......+...++. ..+..+|+++++| .++++++.+|++ +++|||+..++.
T Consensus 105 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~~LD~ 182 (224)
T TIGR02324 105 VSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPI--LLLDEPTASLDA 182 (224)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCH
Confidence 00000 0 01112222333332 1345588888888 899999999998 999999999998
Q ss_pred cChhhHHHHHh
Q 023675 216 RDPKGLYKLAR 226 (279)
Q Consensus 216 R~~~~l~~~~~ 226 (279)
...+.+.+.++
T Consensus 183 ~~~~~l~~~l~ 193 (224)
T TIGR02324 183 ANRQVVVELIA 193 (224)
T ss_pred HHHHHHHHHHH
Confidence 88777665443
No 269
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.60 E-value=5.5e-15 Score=142.75 Aligned_cols=141 Identities=18% Similarity=0.150 Sum_probs=98.8
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~ 150 (279)
.+++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++... ....++
T Consensus 5 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-EPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc-CCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 3677888877754 449999999999999999999999999999999 89999999999876321 011122
Q ss_pred CCccc--------HHHHHH-------------------HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675 151 FKAED--------RVENIR-------------------RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 151 ~~~~~--------~~~~~~-------------------~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
|.+++ ..+.+. ....+..++...++. ..+..+|+++++| .++++++.+
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~ 163 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLD 163 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcC
Confidence 21111 000000 001122223333332 2345688999999 899999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
|++ ++||||++.++......+++.
T Consensus 164 p~l--llLDEPt~~LD~~~~~~l~~~ 187 (510)
T PRK09700 164 AKV--IIMDEPTSSLTNKEVDYLFLI 187 (510)
T ss_pred CCE--EEEeCCCCCCCHHHHHHHHHH
Confidence 998 999999999999887776544
No 270
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=7.6e-15 Score=129.81 Aligned_cols=144 Identities=19% Similarity=0.128 Sum_probs=97.0
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc--C--CccEEEEcCeeccc------cc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--R--GKLTYILDGDNCRH------GL 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~--~~G~i~ldgd~i~~------~~ 145 (279)
.++++++++.|.. +.+|++.+|++++|+|+||||||||+++|+|++.. | .+|.|+++|.++.. ..
T Consensus 7 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 7 AIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred eEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 5778888888763 34999999999999999999999999999999832 2 48999999987632 11
Q ss_pred ccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
...+++.+++ ..+.+.. . ..+...+...++ ......+++++++| .++++++
T Consensus 87 ~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 166 (259)
T PRK14260 87 RRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALA 166 (259)
T ss_pred hhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHh
Confidence 1112222111 1111110 0 011122222222 11234578888888 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.+|++ +++|||+..++......+++.+.
T Consensus 167 ~~p~l--llLDEPt~~LD~~~~~~l~~~l~ 194 (259)
T PRK14260 167 IKPKV--LLMDEPCSALDPIATMKVEELIH 194 (259)
T ss_pred cCCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence 99998 99999999999887776655443
No 271
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.60 E-value=4.7e-15 Score=142.50 Aligned_cols=140 Identities=20% Similarity=0.176 Sum_probs=97.5
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFK 152 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~ 152 (279)
+++++++++|.. +.||++++|++++|+|+||||||||+++|+|.+ .|++|.|.++|.++... ....+++.
T Consensus 4 l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 4 LQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-PLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCceEEECCcccccCCHHHHHHHhcee
Confidence 677788888854 349999999999999999999999999999999 89999999988765311 01111221
Q ss_pred ccc----------------HHHHHH----HHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 153 AED----------------RVENIR----RIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 153 ~~~----------------~~~~~~----~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
++. ..+.+. ....+..++...++. ..+..+|+++++| .++++++.+|++ ++||
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLD 160 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDL--LILD 160 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCE--EEEc
Confidence 111 001100 001122223333332 2345688999999 999999999998 9999
Q ss_pred CCccchhccChhhHHHH
Q 023675 208 VPLQVCEARDPKGLYKL 224 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~~~ 224 (279)
||+..++....+.+.+.
T Consensus 161 EPt~~LD~~~~~~l~~~ 177 (490)
T PRK10938 161 EPFDGLDVASRQQLAEL 177 (490)
T ss_pred CCcccCCHHHHHHHHHH
Confidence 99999999887765543
No 272
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.60 E-value=6.1e-15 Score=130.28 Aligned_cols=146 Identities=18% Similarity=0.140 Sum_probs=98.9
Q ss_pred CCCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675 78 KSTNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN 146 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~ 146 (279)
..+.+++++++++|... .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ..
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCeEEECCEEhhhCCHHHHh
Confidence 34678999999998642 28999999999999999999999999999999 89999999999876421 11
Q ss_pred cCCCCCccc-------H-----------HHHHHHHH---HHHHHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCC
Q 023675 147 RDLSFKAED-------R-----------VENIRRIG---EVAKLFADA--GVI----CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 147 ~~~~~~~~~-------~-----------~~~~~~v~---~~~~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
..++|.++. . ........ .+...+... ++. .....+++++++| .++++++.+
T Consensus 95 ~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~ 174 (257)
T cd03288 95 SRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRK 174 (257)
T ss_pred hhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 111111110 0 00000000 011111110 111 1234578888888 899999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHh
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
|++ +++|||+..++......+++.+.
T Consensus 175 p~l--lllDEPt~gLD~~~~~~l~~~l~ 200 (257)
T cd03288 175 SSI--LIMDEATASIDMATENILQKVVM 200 (257)
T ss_pred CCE--EEEeCCccCCCHHHHHHHHHHHH
Confidence 998 99999999999887766665444
No 273
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.60 E-value=6.1e-15 Score=136.14 Aligned_cols=129 Identities=19% Similarity=0.208 Sum_probs=90.6
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCcc--------cHH
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAE--------DRV 157 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~--------~~~ 157 (279)
+.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|.++ ...
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~ 93 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR 93 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence 569999999999999999999999999999999 89999999999876321 1111222111 111
Q ss_pred HHHHH----------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 158 ENIRR----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 158 ~~~~~----------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ ++||||+..++....+.++
T Consensus 94 enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~l--llLDEPts~LD~~~~~~l~ 171 (354)
T TIGR02142 94 GNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRL--LLMDEPLAALDDPRKYEIL 171 (354)
T ss_pred HHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCCcCCCHHHHHHHH
Confidence 11110 001222333334322 334588999999 999999999998 9999999999998877655
Q ss_pred HHH
Q 023675 223 KLA 225 (279)
Q Consensus 223 ~~~ 225 (279)
+.+
T Consensus 172 ~~L 174 (354)
T TIGR02142 172 PYL 174 (354)
T ss_pred HHH
Confidence 443
No 274
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2e-14 Score=127.49 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=96.1
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------cc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GL 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~ 145 (279)
.+++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|++.. |.+|.|+++|.++.. ..
T Consensus 10 ~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 4778888888864 34999999999999999999999999999998732 478999999987631 01
Q ss_pred ccCCCCCcc-------cHHHHHHH-----------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCCC
Q 023675 146 NRDLSFKAE-------DRVENIRR-----------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 146 ~~~~~~~~~-------~~~~~~~~-----------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
...++|.++ ...+.+.. .......+...+. ...+..+|+++++| .++++++.+
T Consensus 90 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~ 169 (264)
T PRK14243 90 RRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQ 169 (264)
T ss_pred hhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 111121111 11111110 0001111122222 11234588888888 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
|++ ++||||+..++......+.+.+
T Consensus 170 p~l--llLDEPt~~LD~~~~~~l~~~L 194 (264)
T PRK14243 170 PEV--ILMDEPCSALDPISTLRIEELM 194 (264)
T ss_pred CCE--EEEeCCCccCCHHHHHHHHHHH
Confidence 998 9999999999998877665543
No 275
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.2e-14 Score=131.63 Aligned_cols=145 Identities=20% Similarity=0.174 Sum_probs=98.5
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc------
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------ 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~------ 144 (279)
..+.++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|++.. |.+|.|+++|.++...
T Consensus 44 ~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~ 123 (305)
T PRK14264 44 AKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVE 123 (305)
T ss_pred ceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHH
Confidence 45889999988864 34999999999999999999999999999999842 6899999999876320
Q ss_pred cccCCCCCcccH-------HHHHHH-------------------------HHHHHHHHHhCCc--------chhcccCCh
Q 023675 145 LNRDLSFKAEDR-------VENIRR-------------------------IGEVAKLFADAGV--------ICIACLISP 184 (279)
Q Consensus 145 ~~~~~~~~~~~~-------~~~~~~-------------------------v~~~~~~~~~~~~--------~~i~~~~~~ 184 (279)
+...++|.++.. .+.+.. ...+..++...++ ......+++
T Consensus 124 ~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 203 (305)
T PRK14264 124 LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG 203 (305)
T ss_pred HhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence 111222222211 111100 0001111111222 112345888
Q ss_pred HHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 185 YRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 185 ~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++++| .++++++.+|++ ++||||+..++....+.+.+.++
T Consensus 204 Gq~qrv~LAraL~~~p~l--LLLDEPtsgLD~~~~~~l~~~L~ 244 (305)
T PRK14264 204 GQQQRLCIARCLAVDPEV--ILMDEPASALDPIATSKIEDLIE 244 (305)
T ss_pred HHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 88888 899999999998 99999999999887766555443
No 276
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.59 E-value=1.2e-14 Score=127.92 Aligned_cols=143 Identities=15% Similarity=0.054 Sum_probs=96.7
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcc-ccCCccEEEEcCeeccccc----c-cCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL----N-RDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l-~~~~~G~i~ldgd~i~~~~----~-~~~ 149 (279)
.++++++++.|.+ +.+|++++|++++|+|+||||||||+++|+|+. ..|.+|.|+++|.++...- . ..+
T Consensus 7 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 7 ILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred eEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 4778888887764 348999999999999999999999999999973 1688999999998764210 0 011
Q ss_pred CCCccc--------HHHHHH-------------------HHHHHHHHHHhCCcc-----hhcc-cCChHHHHH-HHHHHh
Q 023675 150 SFKAED--------RVENIR-------------------RIGEVAKLFADAGVI-----CIAC-LISPYRKDR-DACRSM 195 (279)
Q Consensus 150 ~~~~~~--------~~~~~~-------------------~v~~~~~~~~~~~~~-----~i~~-~~~~~~~~r-~~ar~l 195 (279)
.+.++. ....+. ....+...+...++. .... .+|+++++| .+++++
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence 111110 011100 001112223333332 1222 488888888 899999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+.+|++ +++|||+..++....+.+++.+
T Consensus 167 ~~~p~l--lllDEPt~~LD~~~~~~l~~~l 194 (252)
T CHL00131 167 LLDSEL--AILDETDSGLDIDALKIIAEGI 194 (252)
T ss_pred HcCCCE--EEEcCCcccCCHHHHHHHHHHH
Confidence 999998 9999999999998877765543
No 277
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=7.3e-15 Score=128.10 Aligned_cols=140 Identities=20% Similarity=0.242 Sum_probs=94.0
Q ss_pred Eeecceeec----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc---
Q 023675 84 WHKNSVDKR----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE--- 154 (279)
Q Consensus 84 ~~~~~~~~~----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~--- 154 (279)
++++++.|. .+.+|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....+++.++
T Consensus 3 ~~~l~~~~~~~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~ 81 (235)
T cd03299 3 VENLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKILLNGKDITNLPPEKRDISYVPQNYA 81 (235)
T ss_pred eEeEEEEeCCceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEcCcCChhHcCEEEEeecCc
Confidence 445555553 3458999999999999999999999999999999 89999999999876421 0111111111
Q ss_pred -----cHHHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 155 -----DRVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 155 -----~~~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
...+.+. ...++..++...++.. .+..+|+++++| .++++++.+|++ +++|||+..
T Consensus 82 ~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l--lllDEPt~g 159 (235)
T cd03299 82 LFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKI--LLLDEPFSA 159 (235)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCE--EEECCCccc
Confidence 1111111 0011122222333322 234578888888 899999999998 999999999
Q ss_pred hhccChhhHHHHHh
Q 023675 213 CEARDPKGLYKLAR 226 (279)
Q Consensus 213 l~~R~~~~l~~~~~ 226 (279)
++....+.+.+.++
T Consensus 160 LD~~~~~~l~~~l~ 173 (235)
T cd03299 160 LDVRTKEKLREELK 173 (235)
T ss_pred CCHHHHHHHHHHHH
Confidence 99888776655433
No 278
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=8e-15 Score=129.16 Aligned_cols=143 Identities=19% Similarity=0.176 Sum_probs=95.6
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cC---CccEEEEcCeecccc------c
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRHG------L 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~---~~G~i~ldgd~i~~~------~ 145 (279)
.|+++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|++. .| .+|.|.++|.++... .
T Consensus 6 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 6 ILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred eEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 4778888888864 3489999999999999999999999999999873 13 489999999876421 1
Q ss_pred ccCCCCCccc-------HHHHHH------------HH-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAED-------RVENIR------------RI-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~~-------~~~~~~------------~v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
...++|.+++ ..+.+. .. ..+...+...++ ......+|+++++| .++++++
T Consensus 86 ~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~ 165 (253)
T PRK14261 86 RRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLA 165 (253)
T ss_pred hceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHh
Confidence 1112221111 001100 00 011111112221 12344588888888 8999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ +++|||+..++....+.+.+.+
T Consensus 166 ~~p~l--llLDEP~~gLD~~~~~~l~~~l 192 (253)
T PRK14261 166 VNPEV--ILMDEPCSALDPIATAKIEDLI 192 (253)
T ss_pred cCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 99998 9999999999998877655443
No 279
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=6.7e-15 Score=137.45 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=92.9
Q ss_pred ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c----ccCCCCCccc-------
Q 023675 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L----NRDLSFKAED------- 155 (279)
Q Consensus 91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~----~~~~~~~~~~------- 155 (279)
..++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... + ...++|.++.
T Consensus 43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-EPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 345669999999999999999999999999999999 89999999999886421 0 1122222211
Q ss_pred -HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675 156 -RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (279)
Q Consensus 156 -~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~ 217 (279)
..+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ ++||||++.++...
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~i--LLLDEPts~LD~~~ 199 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDI--LLMDEAFSALDPLI 199 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCHHH
Confidence 1111110 011222333333322 345688999999 999999999998 99999999999988
Q ss_pred hhhHHHHH
Q 023675 218 PKGLYKLA 225 (279)
Q Consensus 218 ~~~l~~~~ 225 (279)
.+.+++.+
T Consensus 200 r~~l~~~L 207 (400)
T PRK10070 200 RTEMQDEL 207 (400)
T ss_pred HHHHHHHH
Confidence 77655543
No 280
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.5e-14 Score=129.10 Aligned_cols=145 Identities=19% Similarity=0.133 Sum_probs=97.8
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-C---CccEEEEcCeeccc------c
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-R---GKLTYILDGDNCRH------G 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~---~~G~i~ldgd~i~~------~ 144 (279)
..++++++++.|.. +.+|++.+|++++|+|+||||||||+++|+|++.. | .+|.|.++|.++.. .
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~ 98 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHH
Confidence 35788888888864 34999999999999999999999999999999832 2 58999999987631 1
Q ss_pred cccCCCCCccc-------HHHHHHHH-----------HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675 145 LNRDLSFKAED-------RVENIRRI-----------GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 145 ~~~~~~~~~~~-------~~~~~~~v-----------~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
....++|.+++ ..+.+... ..+...+...++ ......+++++++| .++++++.
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 99 LRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred HhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence 11112222111 11111100 001111112221 11234578889888 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|++ ++||||+..++......+++.+.
T Consensus 179 ~p~l--llLDEPt~~LD~~~~~~l~~~L~ 205 (274)
T PRK14265 179 KPDV--LLMDEPCSALDPISTRQVEELCL 205 (274)
T ss_pred CCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 9998 99999999999988777665443
No 281
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.59 E-value=1.6e-14 Score=123.13 Aligned_cols=137 Identities=20% Similarity=0.224 Sum_probs=88.6
Q ss_pred EEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cc--cc-
Q 023675 83 LWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HG--LN- 146 (279)
Q Consensus 83 ~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~--~~- 146 (279)
++++++++|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|. +. +. +.
T Consensus 2 ~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~~~g~-i~~~~q~~~l~~ 79 (204)
T cd03250 2 SVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVSVPGS-IAYVSQEPWIQN 79 (204)
T ss_pred EEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEEEcCE-EEEEecCchhcc
Confidence 45566666643 338999999999999999999999999999999 899999999982 21 00 00
Q ss_pred ----cCCCCCcccHHHHHHHHHHH---HHHHHhC--C----cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 147 ----RDLSFKAEDRVENIRRIGEV---AKLFADA--G----VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 147 ----~~~~~~~~~~~~~~~~v~~~---~~~~~~~--~----~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
..+.+.............+. ...+... + .......+++++++| .++++++.+|++ +++|||++.
T Consensus 80 ~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~l--lllDEP~~~ 157 (204)
T cd03250 80 GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADI--YLLDDPLSA 157 (204)
T ss_pred CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEeCcccc
Confidence 00111100000011111100 0111110 1 111234578888888 999999999998 999999999
Q ss_pred hhccChhhHHH
Q 023675 213 CEARDPKGLYK 223 (279)
Q Consensus 213 l~~R~~~~l~~ 223 (279)
++....+.+++
T Consensus 158 LD~~~~~~l~~ 168 (204)
T cd03250 158 VDAHVGRHIFE 168 (204)
T ss_pred CCHHHHHHHHH
Confidence 99887666654
No 282
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=128.06 Aligned_cols=144 Identities=18% Similarity=0.145 Sum_probs=96.3
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cC---CccEEEEcCeeccc------cc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRH------GL 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~---~~G~i~ldgd~i~~------~~ 145 (279)
.+++++++++|.+ +.||++++|++++|+|+||||||||+++|+|.+. .| .+|.|+++|.++.. ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 4678888888864 3389999999999999999999999999999852 35 48999999987631 01
Q ss_pred ccCCCCCcc-------cHHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAE-------DRVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~-------~~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
...++|.++ ...+.+.. . ..+...+...++ ......+|+++++| .++++++
T Consensus 85 ~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 164 (252)
T PRK14239 85 RKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLA 164 (252)
T ss_pred hhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHh
Confidence 111222111 11111110 0 001111222221 11234578888888 8999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.+|++ +++|||+..++......+++.+.
T Consensus 165 ~~p~l--lllDEPt~~LD~~~~~~l~~~l~ 192 (252)
T PRK14239 165 TSPKI--ILLDEPTSALDPISAGKIEETLL 192 (252)
T ss_pred cCCCE--EEEcCCccccCHHHHHHHHHHHH
Confidence 99988 99999999999888776655443
No 283
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.2e-14 Score=127.82 Aligned_cols=143 Identities=20% Similarity=0.167 Sum_probs=95.5
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--cC--CccEEEEcCeecccc------cc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--WR--GKLTYILDGDNCRHG------LN 146 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~~--~~G~i~ldgd~i~~~------~~ 146 (279)
++++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|+.. .+ .+|.|.++|.++... ..
T Consensus 4 l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (250)
T PRK14245 4 IDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELR 83 (250)
T ss_pred EEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHh
Confidence 566777777654 3489999999999999999999999999999731 33 589999999876421 11
Q ss_pred cCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHHhCC
Q 023675 147 RDLSFKAED-------RVENIRR------------I-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 147 ~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
..++|.+++ ..+.+.. . ..+...+...++. .....+|+++++| .++++++.
T Consensus 84 ~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 163 (250)
T PRK14245 84 KNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAV 163 (250)
T ss_pred hheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhc
Confidence 112222111 1111110 0 0111222223321 1234588899888 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|++ ++||||+..++....+.+.+.++
T Consensus 164 ~p~l--llLDEPt~~LD~~~~~~l~~~l~ 190 (250)
T PRK14245 164 SPSV--LLMDEPASALDPISTAKVEELIH 190 (250)
T ss_pred CCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 9998 99999999999988777655443
No 284
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.59 E-value=1.3e-14 Score=131.99 Aligned_cols=129 Identities=20% Similarity=0.266 Sum_probs=88.7
Q ss_pred eecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c---ccCC---------CCCc
Q 023675 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L---NRDL---------SFKA 153 (279)
Q Consensus 90 ~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~---~~~~---------~~~~ 153 (279)
.+.++.||++++|++++|||.|||||||++.+|.+++ .+ .|.|+|+|.++... + +..+ ++++
T Consensus 301 ~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~-~s-~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsP 378 (534)
T COG4172 301 RAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI-PS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSP 378 (534)
T ss_pred EEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc-Cc-CceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCc
Confidence 3335559999999999999999999999999999998 44 49999999988411 1 0000 0111
Q ss_pred c---------cH------HHHHHHHHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 154 E---------DR------VENIRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 154 ~---------~~------~~~~~~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
. .+ ...-.+...+...+.+.|+-. +..-.++++++| +++|+++-+|+| |+||||++.
T Consensus 379 RmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~--i~LDEPTSA 456 (534)
T COG4172 379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPEL--ILLDEPTSA 456 (534)
T ss_pred ccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcE--EEecCCchH
Confidence 1 00 000111222333344444432 444578889998 999999999999 999999999
Q ss_pred hhccChhhHH
Q 023675 213 CEARDPKGLY 222 (279)
Q Consensus 213 l~~R~~~~l~ 222 (279)
++.-.+..+.
T Consensus 457 LD~SVQaQvv 466 (534)
T COG4172 457 LDRSVQAQVL 466 (534)
T ss_pred hhHHHHHHHH
Confidence 9988876643
No 285
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=8.9e-15 Score=141.13 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=97.6
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCeecccc-----cccCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd~i~~~-----~~~~~ 149 (279)
.+++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|++.. |++|.|+++|.++... ....+
T Consensus 5 ~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 5 LLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred eEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 3677888887753 34999999999999999999999999999999832 3799999999876321 01112
Q ss_pred CCCcccH--------HHHH--------------HH-HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675 150 SFKAEDR--------VENI--------------RR-IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 150 ~~~~~~~--------~~~~--------------~~-v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
+|.+++. .+.+ .. ...+..++...++. ..+..+|+++++| .++++++.+|++
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 164 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 2211110 0000 00 01122223333332 2345688999999 999999999998
Q ss_pred cEEEEeCCccchhccChhhHHHH
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||++.++......+++.
T Consensus 165 --llLDEPt~~LD~~~~~~l~~~ 185 (506)
T PRK13549 165 --LILDEPTASLTESETAVLLDI 185 (506)
T ss_pred --EEEeCCCCCCCHHHHHHHHHH
Confidence 999999999998887765543
No 286
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=1.2e-14 Score=127.61 Aligned_cols=141 Identities=20% Similarity=0.162 Sum_probs=93.3
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc-----ccc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH-----GLN 146 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~-----~~~ 146 (279)
++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|.+ .| .+|.++++|.++.. ...
T Consensus 4 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 4 FNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMN-DLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred EEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhc-ccccCCCCceEEEECCEEcccccchHHHH
Confidence 566777777653 448999999999999999999999999999998 54 58999999977631 111
Q ss_pred cCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675 147 RDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 147 ~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
..++|.+++ ..+.+.. . ..+...+...++ ......+++++++| .++++++.
T Consensus 83 ~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~ 162 (249)
T PRK14253 83 IKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAM 162 (249)
T ss_pred hheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHc
Confidence 112222111 1111110 0 001111111221 11234578888888 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|++ +++|||+..++......+++.+
T Consensus 163 ~p~l--lllDEP~~~LD~~~~~~l~~~l 188 (249)
T PRK14253 163 EPDV--ILMDEPTSALDPIATHKIEELM 188 (249)
T ss_pred CCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence 9998 9999999999988776655443
No 287
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.58 E-value=2.3e-14 Score=124.57 Aligned_cols=129 Identities=24% Similarity=0.177 Sum_probs=88.7
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc------ccCCCCCc-ccHHHHHHH----
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSFKA-EDRVENIRR---- 162 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------~~~~~~~~-~~~~~~~~~---- 162 (279)
+.||++.+|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...- .....+.+ ....+.+..
T Consensus 3 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~~ 81 (230)
T TIGR01184 3 GVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-QPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVDR 81 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHHh
Confidence 458899999999999999999999999999999 899999999998764210 00000000 011111100
Q ss_pred ----------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 163 ----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 163 ----------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
...+...+...++.. ....+|+++++| .++++++.+|++ +++|||+..++....+.+.+.+
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~gLD~~~~~~l~~~l 157 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKV--LLLDEPFGALDALTRGNLQEEL 157 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEcCCCcCCCHHHHHHHHHHH
Confidence 001122233333322 334588899998 899999999998 9999999999988877655433
No 288
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.8e-14 Score=125.53 Aligned_cols=142 Identities=18% Similarity=0.139 Sum_probs=93.6
Q ss_pred EEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeecccc------ccc
Q 023675 83 LWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRHG------LNR 147 (279)
Q Consensus 83 ~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~~------~~~ 147 (279)
+++++++.|. .+.+|++.+|++++|+|+||||||||+++|+|.+.. |.+|.|.++|.++... ...
T Consensus 7 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~ 86 (251)
T PRK14244 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRA 86 (251)
T ss_pred EeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhh
Confidence 3455555554 344999999999999999999999999999999731 4699999999876311 111
Q ss_pred CCCCCcc-------cHHHHHHH-------------H-HHHHHHHHhCCcch--------hcccCChHHHHH-HHHHHhCC
Q 023675 148 DLSFKAE-------DRVENIRR-------------I-GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 148 ~~~~~~~-------~~~~~~~~-------------v-~~~~~~~~~~~~~~--------i~~~~~~~~~~r-~~ar~l~~ 197 (279)
.++|.++ ...+.+.. . ..+...+...++.. .+..+++++++| .++++++.
T Consensus 87 ~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~ 166 (251)
T PRK14244 87 KVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAV 166 (251)
T ss_pred hEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhc
Confidence 1222111 11111110 0 11122233334321 234578888888 89999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|++ +++|||+..++......+++.+.
T Consensus 167 ~p~l--lllDEPt~~LD~~~~~~l~~~l~ 193 (251)
T PRK14244 167 KPTM--LLMDEPCSALDPVATNVIENLIQ 193 (251)
T ss_pred CCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 9988 99999999999887766555443
No 289
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.58 E-value=2.8e-15 Score=133.56 Aligned_cols=141 Identities=21% Similarity=0.162 Sum_probs=93.6
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC--------ccEEEEcCeecccc----
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--------KLTYILDGDNCRHG---- 144 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~--------~G~i~ldgd~i~~~---- 144 (279)
+++++++++|.. +.||++.+|++++|+|+||||||||+++|+|++ .|. +|.|.++|.++...
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~-~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL-TGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCcccccccCCceEEEECCEEcccCCHHH
Confidence 456677766653 449999999999999999999999999999999 776 89999999876321
Q ss_pred cccCCCCCc--------ccHHHHHHH---------------H-HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHh
Q 023675 145 LNRDLSFKA--------EDRVENIRR---------------I-GEVAKLFADAGVIC----IACLISPYRKDR-DACRSM 195 (279)
Q Consensus 145 ~~~~~~~~~--------~~~~~~~~~---------------v-~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l 195 (279)
....+++.+ ....+.+.. . ......+...++.. ....+|+++++| .+++++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 000011100 011111100 0 01111222223321 244578889888 889999
Q ss_pred C---------CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 196 L---------PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 196 ~---------~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+ .+|++ ++||||+..++....+.+++.+
T Consensus 161 ~~~~~~~~~~~~p~l--llLDEPt~~LD~~~~~~l~~~l 197 (272)
T PRK13547 161 AQLWPPHDAAQPPRY--LLLDEPTAALDLAHQHRLLDTV 197 (272)
T ss_pred hccccccccCCCCCE--EEEcCccccCCHHHHHHHHHHH
Confidence 9 47888 9999999999998877765543
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.58 E-value=1.1e-14 Score=141.26 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=98.7
Q ss_pred CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeecccc--
Q 023675 81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRHG-- 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~~-- 144 (279)
.+++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|.+ .| .+|.|.++|.++...
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~-~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLL-PSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC-CCCcCCccceEEEECCEecccCCH
Confidence 3677788777742 339999999999999999999999999999999 54 799999999886321
Q ss_pred -----c-ccCCCCCcccH----------HHHHH-------------HHHHHHHHHHhCCcc-------hhcccCChHHHH
Q 023675 145 -----L-NRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI-------CIACLISPYRKD 188 (279)
Q Consensus 145 -----~-~~~~~~~~~~~----------~~~~~-------------~v~~~~~~~~~~~~~-------~i~~~~~~~~~~ 188 (279)
. ...++|.+++. .+.+. ....+...+...++. ..+..+|+++++
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~q 163 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQ 163 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHH
Confidence 0 01233322211 00000 001122223333442 134568999999
Q ss_pred H-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 189 r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
| .++++++.+|++ ++||||++.++......+++.+
T Consensus 164 rv~iAraL~~~p~l--lllDEPt~~LD~~~~~~l~~~l 199 (529)
T PRK15134 164 RVMIAMALLTRPEL--LIADEPTTALDVSVQAQILQLL 199 (529)
T ss_pred HHHHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHH
Confidence 9 999999999998 9999999999998877755443
No 291
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.58 E-value=9.8e-15 Score=144.09 Aligned_cols=142 Identities=20% Similarity=0.189 Sum_probs=101.3
Q ss_pred CeEEeecceeec----------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc
Q 023675 81 NILWHKNSVDKR----------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144 (279)
Q Consensus 81 ~i~~~~~~~~~~----------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~ 144 (279)
.++++++++.|. ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++...
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~i~~~ 391 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV-ESQGGEIIFNGQRIDTL 391 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCcEEEECCEECCcC
Confidence 478889888884 2339999999999999999999999999999999 89999999999876321
Q ss_pred -------cccCCCCCcccH----------HHHHH-------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH
Q 023675 145 -------LNRDLSFKAEDR----------VENIR-------------RIGEVAKLFADAGVI-----CIACLISPYRKDR 189 (279)
Q Consensus 145 -------~~~~~~~~~~~~----------~~~~~-------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r 189 (279)
....++|.+++. .+.+. ....+..++...++. .....+|+++++|
T Consensus 392 ~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQR 471 (623)
T PRK10261 392 SPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQR 471 (623)
T ss_pred CHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHH
Confidence 111222222210 11110 001122233334442 1345689999999
Q ss_pred -HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 190 -DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 190 -~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.++++++.+|++ +++|||+..|+......+++.+
T Consensus 472 v~iAraL~~~p~l--lllDEPts~LD~~~~~~i~~ll 506 (623)
T PRK10261 472 ICIARALALNPKV--IIADEAVSALDVSIRGQIINLL 506 (623)
T ss_pred HHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 999999999999 9999999999998887765544
No 292
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.3e-14 Score=139.95 Aligned_cols=142 Identities=18% Similarity=0.203 Sum_probs=98.9
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~ 150 (279)
.+++++++++|.+ +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++
T Consensus 4 ~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-QPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 3677888887754 449999999999999999999999999999999 89999999999876311 111122
Q ss_pred CCcccH--------HHHH---------------HHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 151 FKAEDR--------VENI---------------RRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 151 ~~~~~~--------~~~~---------------~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
|.++.. .+.+ .....+...+...++. ..+..+|+++++| .++++++.+|++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l- 161 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARV- 161 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCE-
Confidence 211110 0000 0001122223333332 2345688999999 999999999998
Q ss_pred EEEEeCCccchhccChhhHHHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++||||+..++....+.+++.+
T Consensus 162 -llLDEPt~~LD~~~~~~l~~~l 183 (501)
T PRK11288 162 -IAFDEPTSSLSAREIEQLFRVI 183 (501)
T ss_pred -EEEcCCCCCCCHHHHHHHHHHH
Confidence 9999999999998877765543
No 293
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.58 E-value=1.1e-14 Score=125.45 Aligned_cols=127 Identities=17% Similarity=0.167 Sum_probs=85.0
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCcc-------cHHH
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAE-------DRVE 158 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~-------~~~~ 158 (279)
+.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... ....++|.++ ...+
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~~~ 97 (218)
T cd03290 19 NINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM-QTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATVEE 97 (218)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccHHH
Confidence 348999999999999999999999999999999 89999999999765210 0111111111 1111
Q ss_pred HHHH-----HHHHHHHHHhCCc---------------chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675 159 NIRR-----IGEVAKLFADAGV---------------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (279)
Q Consensus 159 ~~~~-----v~~~~~~~~~~~~---------------~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~ 217 (279)
.+.. ...........++ ......+++++++| .++++++.+|++ +++|||+..++...
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPt~~LD~~~ 175 (218)
T cd03290 98 NITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNI--VFLDDPFSALDIHL 175 (218)
T ss_pred HHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCE--EEEeCCccccCHHH
Confidence 1100 0000011111111 11244688899888 999999999998 99999999999887
Q ss_pred hhhHHH
Q 023675 218 PKGLYK 223 (279)
Q Consensus 218 ~~~l~~ 223 (279)
.+.+++
T Consensus 176 ~~~l~~ 181 (218)
T cd03290 176 SDHLMQ 181 (218)
T ss_pred HHHHHH
Confidence 665544
No 294
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2.4e-14 Score=126.79 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=94.7
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc----CCccEEEEcCeeccc------ccc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW----RGKLTYILDGDNCRH------GLN 146 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~----~~~G~i~ldgd~i~~------~~~ 146 (279)
+..+...+.|.+ ..+|++++|++++|+|+||||||||+++|+|++.. +.+|.|+++|.++.. ...
T Consensus 9 ~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 9 MDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred EEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence 445555555543 44999999999999999999999999999999932 279999999988632 011
Q ss_pred cCCCCCcc-------cHHHHHHHH-----------HHHHHHHHhCCcch--------hcccCChHHHHH-HHHHHhCCCC
Q 023675 147 RDLSFKAE-------DRVENIRRI-----------GEVAKLFADAGVIC--------IACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 147 ~~~~~~~~-------~~~~~~~~v-----------~~~~~~~~~~~~~~--------i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
..++|.++ ...+.+... ..+...+...++.. ....+++++++| .++++++.+|
T Consensus 89 ~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p 168 (261)
T PRK14263 89 RYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEP 168 (261)
T ss_pred hceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 11222211 111111100 11122233333311 123478888888 8999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ +++|||+..++....+.+++.+.
T Consensus 169 ~l--lllDEPtsgLD~~~~~~l~~~l~ 193 (261)
T PRK14263 169 EV--LLLDEPCSALDPIATRRVEELMV 193 (261)
T ss_pred CE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 88 99999999999888777665443
No 295
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=1.5e-14 Score=127.15 Aligned_cols=143 Identities=21% Similarity=0.190 Sum_probs=94.6
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc--c--CCccEEEEcCeecccc------cc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH--W--RGKLTYILDGDNCRHG------LN 146 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~--~--~~~G~i~ldgd~i~~~------~~ 146 (279)
++++++++.|.+ +.+|++.+|++++|+|+||||||||+++|+|++. . +++|.|+++|.++... ..
T Consensus 4 l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~ 83 (250)
T PRK14266 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELR 83 (250)
T ss_pred EEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHh
Confidence 456677766653 3489999999999999999999999999999863 2 3799999999886421 11
Q ss_pred cCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhCC
Q 023675 147 RDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 147 ~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
..++|.+++ ..+.+.. . ..+...+...++ ...+..+|+++++| .++++++.
T Consensus 84 ~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~ 163 (250)
T PRK14266 84 KKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAV 163 (250)
T ss_pred hheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 112221111 1111110 0 001111122222 11244578888888 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|++ +++|||+..++......+.+.+.
T Consensus 164 ~p~l--lllDEP~~gLD~~~~~~l~~~l~ 190 (250)
T PRK14266 164 SPEV--ILMDEPCSALDPISTTKIEDLIH 190 (250)
T ss_pred CCCE--EEEcCCCccCCHHHHHHHHHHHH
Confidence 9988 99999999999887766555443
No 296
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.5e-14 Score=125.02 Aligned_cols=144 Identities=19% Similarity=0.092 Sum_probs=97.7
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-----ccEEEEcCeeccc------
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-----KLTYILDGDNCRH------ 143 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-----~G~i~ldgd~i~~------ 143 (279)
..+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|+ .|.|.++|.++..
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMN-ELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhccc-CCCCCccccceEEECCEEhhccccchH
Confidence 35788888888864 349999999999999999999999999999999 564 7999999987621
Q ss_pred ccccCCCCCc-------ccHHHHHHH-------------HHHHHHHHHhCCc--------chhcccCChHHHHH-HHHHH
Q 023675 144 GLNRDLSFKA-------EDRVENIRR-------------IGEVAKLFADAGV--------ICIACLISPYRKDR-DACRS 194 (279)
Q Consensus 144 ~~~~~~~~~~-------~~~~~~~~~-------------v~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~ 194 (279)
.....++|.+ ....+.+.. ...+...+...++ ...+..+++++++| .++++
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 164 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARA 164 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHH
Confidence 0111111111 111111110 0011112222222 11234588899888 99999
Q ss_pred hCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++.+|++ +++|||+..++......+++.+.
T Consensus 165 l~~~p~v--llLDEP~~~LD~~~~~~l~~~l~ 194 (261)
T PRK14258 165 LAVKPKV--LLMDEPCFGLDPIASMKVESLIQ 194 (261)
T ss_pred HhcCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 9999998 99999999999887776655443
No 297
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.4e-14 Score=124.28 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=95.5
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cC---CccEEEEcCeeccc------cc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WR---GKLTYILDGDNCRH------GL 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~---~~G~i~ldgd~i~~------~~ 145 (279)
.++++++++.|.+ +.||++.+|++++|+|+||||||||+++|+|.+. .| .+|+|+++|.++.. ..
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 4677888877764 3389999999999999999999999999999863 24 48999999987631 01
Q ss_pred ccCCCCCccc-------HHHHHHH------------H-HHHHHHHHhCCc--------chhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAED-------RVENIRR------------I-GEVAKLFADAGV--------ICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~~-------~~~~~~~------------v-~~~~~~~~~~~~--------~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
...++|.+++ ..+.+.. . ......+...+. ......+|+++++| .++++++
T Consensus 85 ~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~ 164 (252)
T PRK14255 85 RKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLA 164 (252)
T ss_pred cCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHh
Confidence 1112222211 1111110 0 001111111221 11234578889888 8999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ +++|||+..++....+.+.+.+
T Consensus 165 ~~p~l--lllDEPt~~LD~~~~~~l~~~l 191 (252)
T PRK14255 165 VKPDV--ILLDEPTSALDPISSTQIENML 191 (252)
T ss_pred cCCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence 99998 9999999999998877765543
No 298
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.3e-14 Score=140.22 Aligned_cols=142 Identities=13% Similarity=0.136 Sum_probs=99.5
Q ss_pred CeEEeecceeec---CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675 81 NILWHKNSVDKR---DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK 152 (279)
Q Consensus 81 ~i~~~~~~~~~~---~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~ 152 (279)
.++++++++.|. ++.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|.++... ....++|.
T Consensus 265 ~l~~~~l~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v 343 (510)
T PRK09700 265 VFEVRNVTSRDRKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-KRAGGEIRLNGKDISPRSPLDAVKKGMAYI 343 (510)
T ss_pred EEEEeCccccCCCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCEECCCCCHHHHHHCCcEEc
Confidence 478888877653 4569999999999999999999999999999999 89999999999876321 11112222
Q ss_pred ccc-----------HHHHHH--------------------H-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHH
Q 023675 153 AED-----------RVENIR--------------------R-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRS 194 (279)
Q Consensus 153 ~~~-----------~~~~~~--------------------~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~ 194 (279)
+++ ..+.+. . ...+..++...++. ..+..+|+++++| .++++
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAra 423 (510)
T PRK09700 344 TESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKW 423 (510)
T ss_pred cCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHH
Confidence 211 000000 0 01112223333332 2345689999999 99999
Q ss_pred hCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++.+|++ ++||||+..++....+.+++.+
T Consensus 424 l~~~p~l--LlLDEPt~~LD~~~~~~l~~~l 452 (510)
T PRK09700 424 LCCCPEV--IIFDEPTRGIDVGAKAEIYKVM 452 (510)
T ss_pred HhcCCCE--EEECCCCCCcCHHHHHHHHHHH
Confidence 9999988 9999999999999877765543
No 299
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=1.7e-14 Score=123.98 Aligned_cols=129 Identities=20% Similarity=0.194 Sum_probs=88.9
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--------cccCCCCCcc--------cHH
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--------LNRDLSFKAE--------DRV 157 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--------~~~~~~~~~~--------~~~ 157 (279)
+.||++++ ++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....++|.++ ...
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 93 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR 93 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence 56999999 999999999999999999999999 89999999999875310 0111111111 111
Q ss_pred HHHHH----------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 158 ENIRR----------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 158 ~~~~~----------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
+.+.. .......+...++.. .+..+|+++++| .++++++.+|++ +++|||+..++....+.++
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l--lllDEPt~~LD~~~~~~l~ 171 (214)
T cd03297 94 ENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPEL--LLLDEPFSALDRALRLQLL 171 (214)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCE--EEEcCCcccCCHHHHHHHH
Confidence 11110 011222233333322 344578888888 899999999998 9999999999998877766
Q ss_pred HHHh
Q 023675 223 KLAR 226 (279)
Q Consensus 223 ~~~~ 226 (279)
+.++
T Consensus 172 ~~l~ 175 (214)
T cd03297 172 PELK 175 (214)
T ss_pred HHHH
Confidence 5443
No 300
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.57 E-value=1.7e-14 Score=123.70 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=97.9
Q ss_pred CCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCC
Q 023675 80 TNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~ 149 (279)
.-|+++++.+.|..+. |+++++|+..+|+|+||||||||++++++.+ +|++|.+.+-|....+. ++..+
T Consensus 30 ~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~-~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 30 PLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH-PPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred ceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc-CCCCCceeeeeeeccCCcchHHHHHHh
Confidence 4589999999998755 8999999999999999999999999999999 78899999988766421 11122
Q ss_pred CCCcccH------------------------------HHHHHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHH
Q 023675 150 SFKAEDR------------------------------VENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRS 194 (279)
Q Consensus 150 ~~~~~~~------------------------------~~~~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~ 194 (279)
++..... ...... ...++...+... ....+|-++++| -++|+
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~---a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRA 185 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAA---AQWLLELLGAKHLADRPFGSLSQGEQRRVLIARA 185 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHH---HHHHHHHcchhhhccCchhhcCHhHHHHHHHHHH
Confidence 2211111 111111 122222223322 233467777777 78999
Q ss_pred hCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++.+|++ ++||||+..++--....+.+.
T Consensus 186 Lv~~P~L--LiLDEP~~GLDl~~re~ll~~ 213 (257)
T COG1119 186 LVKDPEL--LILDEPAQGLDLIAREQLLNR 213 (257)
T ss_pred HhcCCCE--EEecCccccCChHHHHHHHHH
Confidence 9999998 999999999987766555543
No 301
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.57 E-value=3.1e-15 Score=159.56 Aligned_cols=144 Identities=17% Similarity=0.162 Sum_probs=101.0
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.|+|+|++++|... .||++++|+.++|||++|||||||+++|.|++ . .+|.|++||.++.+. ++.
T Consensus 1215 ~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~-~-~~G~I~IdG~di~~i~~~~lR~ 1292 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL-S-TEGEIQIDGVSWNSVTLQTWRK 1292 (1490)
T ss_pred CCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc-C-CCcEEEECCEEcccCCHHHHHh
Confidence 4679999999999642 28999999999999999999999999999998 5 689999999998531 122
Q ss_pred CCCCCccc-------HHHHH-----------HHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 148 DLSFKAED-------RVENI-----------RRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 148 ~~~~~~~~-------~~~~~-----------~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
.+++.+++ .+.++ ....+.+ ..... .|+. ..+..+|+|++|| .+||++++++
T Consensus 1293 ~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~ 1372 (1490)
T TIGR01271 1293 AFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKA 1372 (1490)
T ss_pred ceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCC
Confidence 22221111 11111 0111111 01111 1221 2334588999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ ++|||+++.++....+.+.+.++
T Consensus 1373 ~I--LlLDEaTS~lD~~Te~~I~~~L~ 1397 (1490)
T TIGR01271 1373 KI--LLLDEPSAHLDPVTLQIIRKTLK 1397 (1490)
T ss_pred CE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 98 99999999999887766665554
No 302
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.57 E-value=1.7e-14 Score=139.07 Aligned_cols=142 Identities=20% Similarity=0.268 Sum_probs=101.0
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCccc
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAED 155 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~ 155 (279)
.++++++++.+.++.||++.+|++++|+|+||||||||+++|+|++ .|++|.|.++|.++... ....++|.+++
T Consensus 257 ~l~~~~l~~~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~ 335 (501)
T PRK10762 257 RLKVDNLSGPGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL-PRTSGYVTLDGHEVVTRSPQDGLANGIVYISED 335 (501)
T ss_pred EEEEeCcccCCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHHCCCEEecCc
Confidence 4788888876677889999999999999999999999999999999 89999999999776321 11112222221
Q ss_pred -----------HHHHHH-----------------H-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCC
Q 023675 156 -----------RVENIR-----------------R-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 156 -----------~~~~~~-----------------~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
..+.+. . ...+..++...++. ..+..+|+++++| .++++++.+|+
T Consensus 336 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~ 415 (501)
T PRK10762 336 RKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPK 415 (501)
T ss_pred cccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCC
Confidence 001000 0 01122233333331 2345688999999 99999999998
Q ss_pred ccEEEEeCCccchhccChhhHHHHH
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+ ++||||+..++....+.+.+.+
T Consensus 416 l--llLDEPt~~LD~~~~~~l~~~l 438 (501)
T PRK10762 416 V--LILDEPTRGVDVGAKKEIYQLI 438 (501)
T ss_pred E--EEEcCCCCCCCHhHHHHHHHHH
Confidence 8 9999999999998877655433
No 303
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.57 E-value=4.8e-15 Score=118.11 Aligned_cols=115 Identities=28% Similarity=0.331 Sum_probs=79.0
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCCccc--------HHHH--
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAED--------RVEN-- 159 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~~~~--------~~~~-- 159 (279)
+.++++++|++++|+|+||||||||+++|+|.+ .+.+|.|++++.++... ....+++.++. ..+.
T Consensus 3 ~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~-~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~~ 81 (137)
T PF00005_consen 3 NVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL-PPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENES 81 (137)
T ss_dssp EEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS-HESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHHH
T ss_pred ceEEEEcCCCEEEEEccCCCccccceeeecccc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 457899999999999999999999999999999 78999999999988641 11122222221 1111
Q ss_pred HHHHHHHHHHHHhCCc-chhc----ccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 160 IRRIGEVAKLFADAGV-ICIA----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 160 ~~~v~~~~~~~~~~~~-~~i~----~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
-..+.++...+..... ...+ ..+++++++| .++++++.+|++ +++|||++
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~l--lllDEPt~ 137 (137)
T PF00005_consen 82 DERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKL--LLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSE--EEEESTTT
T ss_pred cccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCE--EEEeCCCC
Confidence 1112222222221111 1122 5688888888 999999999988 99999974
No 304
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.56 E-value=1e-14 Score=138.52 Aligned_cols=125 Identities=25% Similarity=0.285 Sum_probs=88.7
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc--cc----cc---------cCCCCCccc--
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--HG----LN---------RDLSFKAED-- 155 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~--~~----~~---------~~~~~~~~~-- 155 (279)
++.||.+.+||+++|||.||||||||+++|+|++ .|.+|.|.++|.++. .. +. ...++.+..
T Consensus 308 ~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~-~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV 386 (539)
T COG1123 308 DDVSFDLREGETLGLVGESGSGKSTLARILAGLL-PPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTV 386 (539)
T ss_pred eeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccH
Confidence 4459999999999999999999999999999999 889999999998721 00 00 001111110
Q ss_pred ---------------HHHHHHHHHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675 156 ---------------RVENIRRIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (279)
Q Consensus 156 ---------------~~~~~~~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~ 214 (279)
..++.+ .+..++..-++.. ....+|++++|| .+||+++.+|++ +++|||++.++
T Consensus 387 ~~~i~epL~~~~~~~~~~~~~---rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~l--li~DEp~SaLD 461 (539)
T COG1123 387 GDILAEPLRIHGGGSGAERRA---RVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL--LILDEPVSALD 461 (539)
T ss_pred HHHHHhHHhhhcccchHHHHH---HHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCE--EEecCCccccC
Confidence 011111 1333333333322 344588999999 999999999999 99999999999
Q ss_pred ccChhhHHH
Q 023675 215 ARDPKGLYK 223 (279)
Q Consensus 215 ~R~~~~l~~ 223 (279)
...+..+.+
T Consensus 462 vsvqa~Vln 470 (539)
T COG1123 462 VSVQAQVLN 470 (539)
T ss_pred HHHHHHHHH
Confidence 988776443
No 305
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=2.2e-14 Score=121.82 Aligned_cols=136 Identities=22% Similarity=0.177 Sum_probs=88.5
Q ss_pred eEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeeccccc-----ccCC
Q 023675 82 ILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRHGL-----NRDL 149 (279)
Q Consensus 82 i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~~~-----~~~~ 149 (279)
++++|++++..++ .|+++++|++.+|+||||||||||++.|+|.-. ..++|.|.+||+++...- ...+
T Consensus 4 L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi 83 (251)
T COG0396 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI 83 (251)
T ss_pred eEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence 5667777666653 499999999999999999999999999999732 678999999999985210 0111
Q ss_pred CCCcc-----------cH---------------HHHHHHHHHHHHHHHhC---CcchhcccCChHHHHH-HHHHHhCCCC
Q 023675 150 SFKAE-----------DR---------------VENIRRIGEVAKLFADA---GVICIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 150 ~~~~~-----------~~---------------~~~~~~v~~~~~~~~~~---~~~~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
.+..+ +. .++...+.+.+..+.-. -...+-...|++++.| ++++.++-+|
T Consensus 84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP 163 (251)
T COG0396 84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP 163 (251)
T ss_pred EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence 11111 00 11222222222221100 0011223466778878 8888889999
Q ss_pred CccEEEEeCCccchhccChh
Q 023675 200 DFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~ 219 (279)
++ .+||||.+.++--.-+
T Consensus 164 kl--~ILDE~DSGLDIdalk 181 (251)
T COG0396 164 KL--AILDEPDSGLDIDALK 181 (251)
T ss_pred CE--EEecCCCcCccHHHHH
Confidence 99 9999999988765433
No 306
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.56 E-value=1.4e-14 Score=139.31 Aligned_cols=130 Identities=16% Similarity=0.272 Sum_probs=89.9
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccH--------HHH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDR--------VEN 159 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~--------~~~ 159 (279)
++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|.+++. .+.
T Consensus 15 ~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~ 93 (491)
T PRK10982 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-QKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRSVMDN 93 (491)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCCHHHH
Confidence 4569999999999999999999999999999999 89999999999876311 011111111110 000
Q ss_pred H---------------HHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675 160 I---------------RRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 160 ~---------------~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
+ .....+..++...++. ..+..+|+++++| .++++++.+|++ ++||||+..++.....
T Consensus 94 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~l--llLDEPt~~LD~~~~~ 171 (491)
T PRK10982 94 MWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKI--VIMDEPTSSLTEKEVN 171 (491)
T ss_pred hhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCCCCCHHHHH
Confidence 0 0001122223333332 2345688999999 999999999998 9999999999998877
Q ss_pred hHHHHH
Q 023675 220 GLYKLA 225 (279)
Q Consensus 220 ~l~~~~ 225 (279)
.+++.+
T Consensus 172 ~l~~~l 177 (491)
T PRK10982 172 HLFTII 177 (491)
T ss_pred HHHHHH
Confidence 765443
No 307
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.56 E-value=3.6e-14 Score=140.81 Aligned_cols=145 Identities=14% Similarity=0.113 Sum_probs=96.5
Q ss_pred CCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc
Q 023675 80 TNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~ 153 (279)
+.++++++++.|+++ .||++++|++++|+|+||||||||+++|+|++ ++.+|.+.+++.........+..+..
T Consensus 450 ~~i~~~nv~~~~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i~~~~~~~i~~v~Q~~~l~~ 528 (659)
T TIGR00954 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRLTKPAKGKLFYVPQRPYMTL 528 (659)
T ss_pred CeEEEEeeEEECCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEeecCCCcEEEECCCCCCCC
Confidence 458999999988532 38999999999999999999999999999999 88899998875321000000000000
Q ss_pred ccHHHHHHH-------------HHHHHHHHHhCCcch-------------hcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675 154 EDRVENIRR-------------IGEVAKLFADAGVIC-------------IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (279)
Q Consensus 154 ~~~~~~~~~-------------v~~~~~~~~~~~~~~-------------i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l 206 (279)
...++.+.. ..++...+...++.. ....+|+++++| .++|+++.+|++ ++|
T Consensus 529 ~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~i--llL 606 (659)
T TIGR00954 529 GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQF--AIL 606 (659)
T ss_pred cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 000111000 001111111112111 124688999999 999999999998 999
Q ss_pred eCCccchhccChhhHHHHHhC
Q 023675 207 DVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 207 d~p~~~l~~R~~~~l~~~~~~ 227 (279)
|||++.++....+.+++.+++
T Consensus 607 DEpts~LD~~~~~~l~~~l~~ 627 (659)
T TIGR00954 607 DECTSAVSVDVEGYMYRLCRE 627 (659)
T ss_pred eCCccCCCHHHHHHHHHHHHH
Confidence 999999999887777665543
No 308
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.56 E-value=1.2e-14 Score=134.90 Aligned_cols=138 Identities=20% Similarity=0.180 Sum_probs=94.1
Q ss_pred eecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe----ecccc----c----ccCCCCC
Q 023675 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRHG----L----NRDLSFK 152 (279)
Q Consensus 85 ~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd----~i~~~----~----~~~~~~~ 152 (279)
+...+....+.||++++|++++|+|+||||||||+++|+|++ .|++|.|+++|. ++... + ...++|.
T Consensus 33 ~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 33 ETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred hhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 333444556779999999999999999999999999999999 899999999995 33110 0 0112222
Q ss_pred cc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 153 AE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 153 ~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
++ ...+.+.. .......+...++.. ....+|+++++| .++|+++.+|++ +++|
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~I--LLlD 189 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADI--LLMD 189 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEE
Confidence 11 11111110 011122233334322 344588999998 999999999998 9999
Q ss_pred CCccchhccChhhHHHHH
Q 023675 208 VPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~~~~ 225 (279)
||++.++....+.+++.+
T Consensus 190 EPts~LD~~~r~~l~~~L 207 (382)
T TIGR03415 190 EPFSALDPLIRTQLQDEL 207 (382)
T ss_pred CCCccCCHHHHHHHHHHH
Confidence 999999998887766543
No 309
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=2.5e-14 Score=126.40 Aligned_cols=143 Identities=20% Similarity=0.242 Sum_probs=93.3
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC------eeccc----c
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG------DNCRH----G 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg------d~i~~----~ 144 (279)
..++++++.++|.++ .||.+.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++| .++.. .
T Consensus 9 ~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~-~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLI-EIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCcCceeEcCEEEECCcccccCCHHH
Confidence 457778888777653 38999999999999999999999999999999 78886666655 43311 0
Q ss_pred cccCCCCCcc--------cHHHHHH------------HH-HHHHHHHHhCCcc--------hhcccCChHHHHH-HHHHH
Q 023675 145 LNRDLSFKAE--------DRVENIR------------RI-GEVAKLFADAGVI--------CIACLISPYRKDR-DACRS 194 (279)
Q Consensus 145 ~~~~~~~~~~--------~~~~~~~------------~v-~~~~~~~~~~~~~--------~i~~~~~~~~~~r-~~ar~ 194 (279)
....++|.++ ...+.+. .. ..+...+...++. ..+..+++++++| .++++
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lara 167 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARA 167 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHH
Confidence 0111111111 1111110 00 0111222222331 2334578888888 99999
Q ss_pred hCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++.+|++ +++|||+..++....+.+.+.+
T Consensus 168 l~~~P~l--lllDEPt~~LD~~~~~~l~~~l 196 (257)
T PRK14246 168 LALKPKV--LLMDEPTSMIDIVNSQAIEKLI 196 (257)
T ss_pred HHcCCCE--EEEcCCCccCCHHHHHHHHHHH
Confidence 9999998 9999999999888776655543
No 310
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.56 E-value=2.2e-14 Score=138.22 Aligned_cols=140 Identities=14% Similarity=0.104 Sum_probs=95.7
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC--CccEEEEcCeecccc-----cccCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRHG-----LNRDL 149 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~--~~G~i~ldgd~i~~~-----~~~~~ 149 (279)
+++++++++|.. +.||++.+|++++|+|+||||||||+++|+|++ .| .+|.|+++|.++... ....+
T Consensus 2 l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~-~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 456667666653 449999999999999999999999999999998 54 799999999876321 01112
Q ss_pred CCCcccH--------HHHH---------------HH-HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 150 SFKAEDR--------VENI---------------RR-IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 150 ~~~~~~~--------~~~~---------------~~-v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
+|.+++. .+.+ .. ...+..++...++. ..+..+|+++++| .++++++.+|
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 2211110 0000 00 01122223333332 1245688999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHH
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++ ++||||+..++....+.+++.
T Consensus 161 ~l--llLDEPt~~LD~~~~~~l~~~ 183 (500)
T TIGR02633 161 RL--LILDEPSSSLTEKETEILLDI 183 (500)
T ss_pred CE--EEEeCCCCCCCHHHHHHHHHH
Confidence 98 999999999999887776554
No 311
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=5.6e-14 Score=136.35 Aligned_cols=142 Identities=18% Similarity=0.170 Sum_probs=96.2
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCC----CC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL----SF 151 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~----~~ 151 (279)
|++++++++|.+ +.||++.+|++++|+|+||||||||+++|+|.+ .|++|.|.+++.. +. .+.... .+
T Consensus 2 l~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~~i~-~~~q~~~~~~~~ 79 (530)
T PRK15064 2 LSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL-EPSAGNVSLDPNERLG-KLRQDQFAFEEF 79 (530)
T ss_pred EEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEE-EEeccCCcCCCC
Confidence 566777777754 349999999999999999999999999999999 8999999998732 11 000000 00
Q ss_pred CcccHHH-----HH------------------------------------HHHHHHHHHHHhCCcch-----hcccCChH
Q 023675 152 KAEDRVE-----NI------------------------------------RRIGEVAKLFADAGVIC-----IACLISPY 185 (279)
Q Consensus 152 ~~~~~~~-----~~------------------------------------~~v~~~~~~~~~~~~~~-----i~~~~~~~ 185 (279)
+..+... .. .....+..++...++.. ....+|++
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgG 159 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPG 159 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHH
Confidence 0000000 00 00011222333334321 24568899
Q ss_pred HHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 186 RKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 186 ~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
+++| .++++++.+|++ ++||||++.++......+.+.+..
T Consensus 160 q~qrv~lA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~l~~ 200 (530)
T PRK15064 160 WKLRVLLAQALFSNPDI--LLLDEPTNNLDINTIRWLEDVLNE 200 (530)
T ss_pred HHHHHHHHHHHhcCCCE--EEEcCCCcccCHHHHHHHHHHHHh
Confidence 9999 999999999998 999999999999988877766653
No 312
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.55 E-value=3e-14 Score=137.64 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=99.9
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCccc
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAED 155 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~ 155 (279)
.+++++++....++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... ....++|.+++
T Consensus 268 ~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 346 (510)
T PRK15439 268 VLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLVYLPED 346 (510)
T ss_pred eEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcEECCCC
Confidence 4778887754556789999999999999999999999999999999 89999999999876321 01122222221
Q ss_pred -----------HHHHH--------------HHH-HHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 156 -----------RVENI--------------RRI-GEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 156 -----------~~~~~--------------~~v-~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
..+.+ ... ..+..++...++. ..+..+|+++++| .++++++.+|++
T Consensus 347 ~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~l-- 424 (510)
T PRK15439 347 RQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQL-- 424 (510)
T ss_pred hhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCE--
Confidence 00110 000 0112223333332 2345688899998 899999999998
Q ss_pred EEEeCCccchhccChhhHHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++||||+..++....+.+.+.+
T Consensus 425 LlLDEPt~gLD~~~~~~l~~~l 446 (510)
T PRK15439 425 LIVDEPTRGVDVSARNDIYQLI 446 (510)
T ss_pred EEECCCCcCcChhHHHHHHHHH
Confidence 9999999999999887765543
No 313
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.55 E-value=3.8e-14 Score=136.28 Aligned_cols=142 Identities=18% Similarity=0.220 Sum_probs=98.7
Q ss_pred CeEEeecceee---cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCC
Q 023675 81 NILWHKNSVDK---RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFK 152 (279)
Q Consensus 81 ~i~~~~~~~~~---~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~ 152 (279)
.|+++++++.+ .++.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|.++... +...++|.
T Consensus 250 ~i~~~~l~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~ 328 (491)
T PRK10982 250 ILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-EKSAGTITLHGKKINNHNANEAINHGFALV 328 (491)
T ss_pred EEEEeCcccccCcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-cCCccEEEECCEECCCCCHHHHHHCCCEEc
Confidence 47888887764 34569999999999999999999999999999999 89999999999876421 01112222
Q ss_pred cccHH----------------HHHH------------HH-HHHHHHHHhCCc-----chhcccCChHHHHH-HHHHHhCC
Q 023675 153 AEDRV----------------ENIR------------RI-GEVAKLFADAGV-----ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 153 ~~~~~----------------~~~~------------~v-~~~~~~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
++.+. ..+. .. ......+...++ ...+..+|+++++| .++++++.
T Consensus 329 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 408 (491)
T PRK10982 329 TEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLT 408 (491)
T ss_pred CCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhc
Confidence 21100 0000 00 001111122222 22345688999999 89999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
+|++ ++||||+..++......+++.+
T Consensus 409 ~p~i--llLDEPt~gLD~~~~~~~~~~l 434 (491)
T PRK10982 409 QPEI--LMLDEPTRGIDVGAKFEIYQLI 434 (491)
T ss_pred CCCE--EEEcCCCcccChhHHHHHHHHH
Confidence 9998 9999999999999887765543
No 314
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.55 E-value=2.8e-14 Score=123.93 Aligned_cols=130 Identities=21% Similarity=0.189 Sum_probs=88.3
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC----CccEEEEcCeecccc--cccCCCCCcccH----------
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHG--LNRDLSFKAEDR---------- 156 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~----~~G~i~ldgd~i~~~--~~~~~~~~~~~~---------- 156 (279)
++.||++++|++++|+|+||||||||+++|+|.+ .| .+|.|+++|.++... ....++|.+++.
T Consensus 3 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t~ 81 (230)
T TIGR02770 3 QDLNLSLKRGEVLALVGESGSGKSLTCLAILGLL-PPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTM 81 (230)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccCH
Confidence 3568899999999999999999999999999999 67 899999999876321 011112111110
Q ss_pred HHH----HHH--------HHHHHHHHHhCCcc-------hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 157 VEN----IRR--------IGEVAKLFADAGVI-------CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 157 ~~~----~~~--------v~~~~~~~~~~~~~-------~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
.+. ... ...+...+...++. ..+..+|+++++| .++++++.+|++ ++||||+..++..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~v--llLDEPt~~LD~~ 159 (230)
T TIGR02770 82 GNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF--LIADEPTTDLDVV 159 (230)
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCE--EEEcCCccccCHH
Confidence 000 000 00112223333332 1234578888888 999999999988 9999999999988
Q ss_pred ChhhHHHHH
Q 023675 217 DPKGLYKLA 225 (279)
Q Consensus 217 ~~~~l~~~~ 225 (279)
..+.+++.+
T Consensus 160 ~~~~l~~~l 168 (230)
T TIGR02770 160 NQARVLKLL 168 (230)
T ss_pred HHHHHHHHH
Confidence 776655433
No 315
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=3.3e-14 Score=137.24 Aligned_cols=141 Identities=18% Similarity=0.233 Sum_probs=98.1
Q ss_pred CeEEeecceeec--------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCeecccc-----cc
Q 023675 81 NILWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LN 146 (279)
Q Consensus 81 ~i~~~~~~~~~~--------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd~i~~~-----~~ 146 (279)
.++++++++.|. ++.||++++|++++|+|+||||||||+++|+|++ . |.+|.|+++|.++... ..
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~~~G~i~~~g~~~~~~~~~~~~~ 337 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAY-PGRWEGEIFIDGKPVKIRNPQQAIA 337 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCcEEEECCEECCCCCHHHHHH
Confidence 478899988883 2349999999999999999999999999999999 6 5899999999876311 01
Q ss_pred cCCCCCccc-----------HHHHHH-----------------HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHH
Q 023675 147 RDLSFKAED-----------RVENIR-----------------RIGEVAKLFADAGVI-----CIACLISPYRKDR-DAC 192 (279)
Q Consensus 147 ~~~~~~~~~-----------~~~~~~-----------------~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~a 192 (279)
..++|.++. ..+.+. ....+...+...++. ..+..+|+++++| .++
T Consensus 338 ~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 338 QGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred CCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHH
Confidence 112221111 000000 001122223333332 2345688999999 899
Q ss_pred HHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 193 r~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++++.+|++ ++||||+..++....+.+++.
T Consensus 418 ~al~~~p~l--llLDEPt~~LD~~~~~~l~~~ 447 (506)
T PRK13549 418 KCLLLNPKI--LILDEPTRGIDVGAKYEIYKL 447 (506)
T ss_pred HHHhhCCCE--EEEcCCCCCcCHhHHHHHHHH
Confidence 999999998 999999999999887775543
No 316
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.54 E-value=3.1e-14 Score=124.25 Aligned_cols=132 Identities=15% Similarity=0.116 Sum_probs=89.8
Q ss_pred cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCCCc---------ccHHHH
Q 023675 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSFKA---------EDRVEN 159 (279)
Q Consensus 92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~~~---------~~~~~~ 159 (279)
..+.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++... ....++|.+ ....+.
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~ 115 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDS 115 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEccccchhhcccEEEEcCCccccCCCCcHHHH
Confidence 34568999999999999999999999999999999 89999999999865210 111111111 001111
Q ss_pred HHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 160 IRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 160 ~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
+.. ...+..++...++.. .+..+|+++++| .++++++.+|++ +++|||+..++....+.++
T Consensus 116 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~l--lllDEPt~~LD~~~~~~l~ 193 (236)
T cd03267 116 FYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEI--LFLDEPTIGLDVVAQENIR 193 (236)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHHHHH
Confidence 100 001112222223321 234578888888 899999999998 9999999999998877766
Q ss_pred HHHh
Q 023675 223 KLAR 226 (279)
Q Consensus 223 ~~~~ 226 (279)
+.+.
T Consensus 194 ~~l~ 197 (236)
T cd03267 194 NFLK 197 (236)
T ss_pred HHHH
Confidence 5443
No 317
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.54 E-value=3.2e-14 Score=123.13 Aligned_cols=125 Identities=19% Similarity=0.253 Sum_probs=85.3
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc----------cHHHHH------
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE----------DRVENI------ 160 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~----------~~~~~~------ 160 (279)
|++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.++.... ..++|.++ ...+.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~-~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~ 78 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLI-PPAKGTVKVAGASPGKGW-RHIGYVPQRHEFAWDFPISVAHTVMSGRTG 78 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCccchHhh-CcEEEecccccccCCCCccHHHHHHhcccc
Confidence 568899999999999999999999999999 899999999998752110 00111000 000000
Q ss_pred ----------HHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 161 ----------RRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 161 ----------~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.....+..++...++. ..+..+|+++++| .++++++.+|++ +++|||+..++....+.+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l--lilDEP~~~LD~~~~~~l~~~l 156 (223)
T TIGR03771 79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSV--LLLDEPFTGLDMPTQELLTELF 156 (223)
T ss_pred ccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 0001122222222332 1344588888888 999999999998 9999999999998877765543
No 318
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.54 E-value=3.3e-14 Score=136.96 Aligned_cols=140 Identities=16% Similarity=0.195 Sum_probs=97.0
Q ss_pred CeEEeecceeec--------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCeecccc-----cc
Q 023675 81 NILWHKNSVDKR--------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGDNCRHG-----LN 146 (279)
Q Consensus 81 ~i~~~~~~~~~~--------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd~i~~~-----~~ 146 (279)
.++++++++.|. ++.||++.+|++++|+|+||||||||+++|+|.+ . +.+|.|+++|.++... +.
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~~G~i~~~g~~~~~~~~~~~~~ 335 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY-PGKFEGNVFINGKPVDIRNPAQAIR 335 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC-CCCCCeEEEECCEECCCCCHHHHHh
Confidence 478888888772 2349999999999999999999999999999999 6 4799999999776311 01
Q ss_pred cCCCCCcccH-----------HHH--------H--------H-HHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHH
Q 023675 147 RDLSFKAEDR-----------VEN--------I--------R-RIGEVAKLFADAGVI-----CIACLISPYRKDR-DAC 192 (279)
Q Consensus 147 ~~~~~~~~~~-----------~~~--------~--------~-~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~a 192 (279)
..++|.+++. .+. . . .-..+..++...++. ..+..+|+++++| .++
T Consensus 336 ~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHH
Confidence 1122211110 000 0 0 001122233333332 2345689999999 899
Q ss_pred HHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 193 r~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
++++.+|++ ++||||+..++......+++
T Consensus 416 ~al~~~p~l--llLDEPt~~LD~~~~~~l~~ 444 (500)
T TIGR02633 416 KMLLTNPRV--LILDEPTRGVDVGAKYEIYK 444 (500)
T ss_pred HHHhhCCCE--EEEcCCCCCcCHhHHHHHHH
Confidence 999999998 99999999999988776554
No 319
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.54 E-value=3.8e-14 Score=139.95 Aligned_cols=140 Identities=17% Similarity=0.133 Sum_probs=97.7
Q ss_pred CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc--------
Q 023675 81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------- 143 (279)
Q Consensus 81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-------- 143 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|..+..
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll-~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL-EQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCeEEEECCEEecccccccccc
Confidence 5788888888852 339999999999999999999999999999999 8899999998853310
Q ss_pred ---------cc-ccCCCCCccc----------HHHHHHH-------------HHHHHHHHHhCCcc-------hhcccCC
Q 023675 144 ---------GL-NRDLSFKAED----------RVENIRR-------------IGEVAKLFADAGVI-------CIACLIS 183 (279)
Q Consensus 144 ---------~~-~~~~~~~~~~----------~~~~~~~-------------v~~~~~~~~~~~~~-------~i~~~~~ 183 (279)
.. ...+++.+++ ..+.+.. ...+..++...++. .....+|
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LS 170 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLS 170 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCC
Confidence 00 0112222221 0111110 01122233344441 2345689
Q ss_pred hHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 184 PYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 184 ~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
+++++| .++++++.+|++ +++|||+..++......+.+
T Consensus 171 gGq~QRv~iA~AL~~~P~l--LllDEPt~~LD~~~~~~l~~ 209 (623)
T PRK10261 171 GGMRQRVMIAMALSCRPAV--LIADEPTTALDVTIQAQILQ 209 (623)
T ss_pred HHHHHHHHHHHHHhCCCCE--EEEeCCCCccCHHHHHHHHH
Confidence 999999 999999999998 99999999999988766444
No 320
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.54 E-value=7.2e-14 Score=122.78 Aligned_cols=125 Identities=14% Similarity=0.039 Sum_probs=83.6
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc-ccHHHHHHHH--------HHH
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-EDRVENIRRI--------GEV 166 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~-~~~~~~~~~v--------~~~ 166 (279)
++.+.+|++++|+|+||||||||+++|+|.+ .|.+|.|.++|..+... ........ ....+.+... ...
T Consensus 19 ~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~~i~~~-~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~ 96 (246)
T cd03237 19 GGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELDTVSYK-PQYIKADYEGTVRDLLSSITKDFYTHPYFK 96 (246)
T ss_pred cCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCceEEEe-cccccCCCCCCHHHHHHHHhhhccccHHHH
Confidence 4466789999999999999999999999999 89999999999644210 00000000 0011111100 001
Q ss_pred HHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 167 AKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 167 ~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
..++...++.. .+..+|+++++| .++++++.+|++ +++|||+..++......+.+.
T Consensus 97 ~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~l--lllDEPt~~LD~~~~~~l~~~ 157 (246)
T cd03237 97 TEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADI--YLLDEPSAYLDVEQRLMASKV 157 (246)
T ss_pred HHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence 11222233322 244588899988 899999999998 999999999999887765543
No 321
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=8.6e-14 Score=137.68 Aligned_cols=143 Identities=17% Similarity=0.203 Sum_probs=95.9
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec----ccccc----cC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC----RHGLN----RD 148 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i----~~~~~----~~ 148 (279)
|+++|++++|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|++|.|.+++... ..... ..
T Consensus 2 i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 2 IVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred EEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 566777777764 449999999999999999999999999999998 89999999988531 10000 00
Q ss_pred CCCCcccHHH------------------HHHH-------------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HH
Q 023675 149 LSFKAEDRVE------------------NIRR-------------IGEVAKLFADAGVI-----CIACLISPYRKDR-DA 191 (279)
Q Consensus 149 ~~~~~~~~~~------------------~~~~-------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ 191 (279)
+++..+.... .+.. -..+..++...|+. ..+..+|+|+++| .+
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 0111100000 0000 00112223333332 1244578999998 99
Q ss_pred HHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
+++++.+|++ ++||||++.|+......+.+.+..
T Consensus 161 A~aL~~~P~l--LLLDEPtn~LD~~~~~~L~~~L~~ 194 (638)
T PRK10636 161 AQALICRSDL--LLLDEPTNHLDLDAVIWLEKWLKS 194 (638)
T ss_pred HHHHccCCCE--EEEcCCCCcCCHHHHHHHHHHHHh
Confidence 9999999998 999999999999877766665543
No 322
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.53 E-value=9.3e-14 Score=135.52 Aligned_cols=143 Identities=18% Similarity=0.143 Sum_probs=95.8
Q ss_pred CeEEeecceeec-C-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe-ecccccccCCCCCc
Q 023675 81 NILWHKNSVDKR-D-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~-~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd-~i~~~~~~~~~~~~ 153 (279)
.+++++++++|. + +.||++++|++++|+|+||||||||+++|+|.+ .|++|.|.+++. .+.. +.....+.+
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~-~p~~G~i~~~~~~~i~~-v~Q~~~~~~ 83 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFEGEARPAPGIKVGY-LPQEPQLDP 83 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EecCCCCCC
Confidence 467788888886 3 349999999999999999999999999999999 899999998753 1110 000000000
Q ss_pred c-cHHHHHHH------------------------------------------------HHHHHHHHHhCCc---chhccc
Q 023675 154 E-DRVENIRR------------------------------------------------IGEVAKLFADAGV---ICIACL 181 (279)
Q Consensus 154 ~-~~~~~~~~------------------------------------------------v~~~~~~~~~~~~---~~i~~~ 181 (279)
. ...+.+.. ...+...+...++ ...+..
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 163 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTK 163 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhh
Confidence 0 00010000 0001111222222 112345
Q ss_pred CChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 182 ISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 182 ~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
+|+++++| .++++++.+|++ ++||||++.|+......+.+.++.
T Consensus 164 LSgGqkqrv~la~al~~~p~v--lLLDEPt~~LD~~~~~~l~~~L~~ 208 (556)
T PRK11819 164 LSGGERRRVALCRLLLEKPDM--LLLDEPTNHLDAESVAWLEQFLHD 208 (556)
T ss_pred cCHHHHHHHHHHHHHhCCCCE--EEEcCCCCcCChHHHHHHHHHHHh
Confidence 88899998 999999999998 999999999999988877665553
No 323
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.53 E-value=2.6e-15 Score=123.30 Aligned_cols=157 Identities=22% Similarity=0.312 Sum_probs=101.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc---ccccCCCCCcccHHHHHHHHHHHHHHH-Hh-CCcch
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENIRRIGEVAKLF-AD-AGVIC 177 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~-~~~~~ 177 (279)
..++|||++||||||+++.|++.|+-+ ++|.|.+-. +++....|.......++..-.++...+ .. ..+++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~-----F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~Via 77 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLP-----FIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIA 77 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCC-----cccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 468999999999999999999999766 899987632 222212222223333333322332222 22 24455
Q ss_pred hcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChh----hHHHH-HhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675 178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK----GLYKL-AREGKVKGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 178 i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~----~l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
.+++....+++|..++. .. +.|||+.|++.+.+|+.. ++++. .+...+..++..|.++|... ++.++++
T Consensus 78 TGGG~v~~~enr~~l~~----~g-~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~R~~~Y~e~-a~~~~~~ 151 (172)
T COG0703 78 TGGGAVLSEENRNLLKK----RG-IVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEERQPLYREV-ADFIIDT 151 (172)
T ss_pred CCCccccCHHHHHHHHh----CC-eEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHHHHHHHHHh-CcEEecC
Confidence 55555555555554433 22 459999999999999872 23332 22244667788899999875 7788887
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC
Q 023675 253 MGDDCPSPADMVETVVSYLDEN 274 (279)
Q Consensus 253 ~~~~~~~~~e~~~~Il~~l~~~ 274 (279)
+..+ ++++++|+..|...
T Consensus 152 ---~~~~-~~v~~~i~~~l~~~ 169 (172)
T COG0703 152 ---DDRS-EEVVEEILEALEGS 169 (172)
T ss_pred ---CCCc-HHHHHHHHHHHHHh
Confidence 5666 88999999988753
No 324
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1e-13 Score=134.53 Aligned_cols=144 Identities=17% Similarity=0.088 Sum_probs=99.7
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCC--CCCc
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--SFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~--~~~~ 153 (279)
.+++++++++|.++ .||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.+++..-.-.+.... .+..
T Consensus 319 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~~~q~~~~~~~~ 397 (530)
T PRK15064 319 ALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPDSGTVKWSENANIGYYAQDHAYDFEN 397 (530)
T ss_pred eEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCceEEEEEcccccccCCC
Confidence 58999999998643 49999999999999999999999999999999 8999999998842100011100 0110
Q ss_pred -ccHHHHHHH-------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675 154 -EDRVENIRR-------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 154 -~~~~~~~~~-------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
....+.+.. -..+...+...++. ..+..+|+++++| .++++++.+|++ ++||||++.++.....
T Consensus 398 ~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~l--llLDEPt~~LD~~~~~ 475 (530)
T PRK15064 398 DLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNV--LVMDEPTNHMDMESIE 475 (530)
T ss_pred CCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHH
Confidence 001111110 01112223333331 2355688999998 899999999998 9999999999998877
Q ss_pred hHHHHHhC
Q 023675 220 GLYKLARE 227 (279)
Q Consensus 220 ~l~~~~~~ 227 (279)
.+.+.+..
T Consensus 476 ~l~~~l~~ 483 (530)
T PRK15064 476 SLNMALEK 483 (530)
T ss_pred HHHHHHHH
Confidence 77765553
No 325
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.53 E-value=1.7e-13 Score=122.66 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=91.3
Q ss_pred CCCCeEEeecceee---cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec--ccc--cc----
Q 023675 78 KSTNILWHKNSVDK---RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RHG--LN---- 146 (279)
Q Consensus 78 ~~~~i~~~~~~~~~---~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i--~~~--~~---- 146 (279)
....++++++++.. ....||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.-- .+. +.
T Consensus 36 ~~~~l~i~nls~~~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~G~I~i~g~i~yv~q~~~l~~~tv 114 (282)
T cd03291 36 DDNNLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSEGKIKHSGRISFSSQFSWIMPGTI 114 (282)
T ss_pred CCCeEEEEEEEEecccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEEEEEeCcccccccCH
Confidence 34568888887641 23449999999999999999999999999999999 89999999988421 000 00
Q ss_pred -cCCCCCcccHHHHHHHHHH---HHHHHHhCC--c----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675 147 -RDLSFKAEDRVENIRRIGE---VAKLFADAG--V----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (279)
Q Consensus 147 -~~~~~~~~~~~~~~~~v~~---~~~~~~~~~--~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~ 215 (279)
..+.+........+..... +...+.... . ...+..+|+++++| .++++++.+|++ +++|||+..++.
T Consensus 115 ~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~i--LiLDEPt~gLD~ 192 (282)
T cd03291 115 KENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDV 192 (282)
T ss_pred HHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECCCccCCH
Confidence 0000100000000000000 001111000 0 01124678888888 899999999988 999999999998
Q ss_pred cChhhHHH
Q 023675 216 RDPKGLYK 223 (279)
Q Consensus 216 R~~~~l~~ 223 (279)
.....+++
T Consensus 193 ~~~~~l~~ 200 (282)
T cd03291 193 FTEKEIFE 200 (282)
T ss_pred HHHHHHHH
Confidence 77665544
No 326
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.53 E-value=4.1e-14 Score=136.98 Aligned_cols=139 Identities=19% Similarity=0.183 Sum_probs=92.4
Q ss_pred EEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCccEEEEc-------------------
Q 023675 83 LWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGKLTYILD------------------- 137 (279)
Q Consensus 83 ~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ld------------------- 137 (279)
+++|++++|.. +.||++.+|++++|+|+||||||||+++|+|++. .|.+|.|+++
T Consensus 2 ~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~ 81 (520)
T TIGR03269 2 EVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEP 81 (520)
T ss_pred EEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccc
Confidence 45666666643 4499999999999999999999999999999863 5889999997
Q ss_pred ----Ceecc-------c-------ccccCCCCCccc---------HHHHHHH------------HHHHHHHHHhCCcch-
Q 023675 138 ----GDNCR-------H-------GLNRDLSFKAED---------RVENIRR------------IGEVAKLFADAGVIC- 177 (279)
Q Consensus 138 ----gd~i~-------~-------~~~~~~~~~~~~---------~~~~~~~------------v~~~~~~~~~~~~~~- 177 (279)
|.++. . .....+++.++. ..+.+.. ...+..++...++..
T Consensus 82 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~ 161 (520)
T TIGR03269 82 CPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHR 161 (520)
T ss_pred cccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh
Confidence 22210 0 001111211110 0111100 011222333333322
Q ss_pred ---hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 178 ---IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 178 ---i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
....+|+++++| .++++++.+|++ ++||||++.++......+++
T Consensus 162 ~~~~~~~LSgGq~qrv~iA~al~~~p~l--llLDEPt~~LD~~~~~~l~~ 209 (520)
T TIGR03269 162 ITHIARDLSGGEKQRVVLARQLAKEPFL--FLADEPTGTLDPQTAKLVHN 209 (520)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCE--EEeeCCcccCCHHHHHHHHH
Confidence 345689999999 999999999998 99999999999998877544
No 327
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.53 E-value=7.1e-14 Score=124.46 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=91.6
Q ss_pred eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC----CccEEEEcCeecccc--------cccCCCCCcccH
Q 023675 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHG--------LNRDLSFKAEDR 156 (279)
Q Consensus 89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~----~~G~i~ldgd~i~~~--------~~~~~~~~~~~~ 156 (279)
+...++.||++.+||+++|||.|||||||++++|+++++.+ .+|+|.++|.++... ....+++.+++.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 44455669999999999999999999999999999999523 468999999976311 112233333321
Q ss_pred --------------HHHHH----------HHHHHHHHHHhCCcc-------hhcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 157 --------------VENIR----------RIGEVAKLFADAGVI-------CIACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 157 --------------~~~~~----------~v~~~~~~~~~~~~~-------~i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
.+.+. .......++...++- .+...+|++++|| -+|.+++.+|++ +
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~L--l 175 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKL--L 175 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCE--E
Confidence 01111 011222333333332 1344588999999 889999999999 9
Q ss_pred EEeCCccchhccChhhHHH
Q 023675 205 FMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~ 223 (279)
+.|||+..|+--.+..+++
T Consensus 176 IADEPTTALDvt~QaqIl~ 194 (316)
T COG0444 176 IADEPTTALDVTVQAQILD 194 (316)
T ss_pred EeCCCcchhhHHHHHHHHH
Confidence 9999999998887766443
No 328
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.52 E-value=9.2e-14 Score=113.56 Aligned_cols=143 Identities=21% Similarity=0.151 Sum_probs=95.8
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc--c----------
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--H---------- 143 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~--~---------- 143 (279)
-+++++++-.|.. +.||.+.|||+++|+|.||||||||+++|++.+ .|+.|.|..+.++-. +
T Consensus 6 LL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v~Y~~r~~~~~dl~~msEaeRR 84 (258)
T COG4107 6 LLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTVTYRMRDGQPRDLYTMSEAERR 84 (258)
T ss_pred ceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence 3455666666654 449999999999999999999999999999999 899999987763321 0
Q ss_pred -ccccCCCCCcccH----------------------HHHHHHHHHHHHHHHh-----C-CcchhcccCChHHHHH-HHHH
Q 023675 144 -GLNRDLSFKAEDR----------------------VENIRRIGEVAKLFAD-----A-GVICIACLISPYRKDR-DACR 193 (279)
Q Consensus 144 -~~~~~~~~~~~~~----------------------~~~~~~v~~~~~~~~~-----~-~~~~i~~~~~~~~~~r-~~ar 193 (279)
-++.+.+|..+.. .+.+..+.+.+.-... . .+-......+++.++| .++|
T Consensus 85 ~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiAR 164 (258)
T COG4107 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHH
Confidence 0122233322211 1223333333332221 1 1112344466777777 9999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.++..|.+ +|+|||+..++-..+.+++...+
T Consensus 165 nLVt~PrL--vfMDEPTGGLDVSVQARLLDllr 195 (258)
T COG4107 165 NLVTRPRL--VFMDEPTGGLDVSVQARLLDLLR 195 (258)
T ss_pred HhccCCce--EEecCCCCCcchhhHHHHHHHHH
Confidence 99999988 99999999999888877665444
No 329
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.1e-13 Score=125.69 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=92.4
Q ss_pred CCCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc------
Q 023675 78 KSTNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------ 145 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------ 145 (279)
.-..++++|+.|.|++.. |+++++|+++.|+|.|||||||++++|.|++ .|++|.|++||.++...-
T Consensus 319 ~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I~ldg~pV~~e~ledYR~ 397 (546)
T COG4615 319 DWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEILLDGKPVSAEQLEDYRK 397 (546)
T ss_pred cccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-CCCCCceeECCccCCCCCHHHHHH
Confidence 345799999999998763 8999999999999999999999999999999 999999999999885210
Q ss_pred -----c----------cCCC-CCcccHHHHHHHHHHHHHHHH-hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEe
Q 023675 146 -----N----------RDLS-FKAEDRVENIRRIGEVAKLFA-DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMD 207 (279)
Q Consensus 146 -----~----------~~~~-~~~~~~~~~~~~v~~~~~~~~-~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld 207 (279)
. +..+ -+++....|..++. ++.... ..+..... .++.+|+.| +...+++.+.++ +.+|
T Consensus 398 LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLe-l~~ktsl~d~~fs~~-kLStGQkKRlAll~AllEeR~I--lv~D 473 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLE-LAHKTSLNDGRFSNL-KLSTGQKKRLALLLALLEERDI--LVLD 473 (546)
T ss_pred HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHH-HhhhhcccCCccccc-ccccchHHHHHHHHHHHhhCCe--EEee
Confidence 0 0001 11112222222221 111111 11222222 355666666 888888888777 7888
Q ss_pred CCccchhccChhhHH
Q 023675 208 VPLQVCEARDPKGLY 222 (279)
Q Consensus 208 ~p~~~l~~R~~~~l~ 222 (279)
|=-+.-++..++-.|
T Consensus 474 EWAADQDPaFRR~FY 488 (546)
T COG4615 474 EWAADQDPAFRREFY 488 (546)
T ss_pred hhhccCChHHHHHHH
Confidence 865555554444444
No 330
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.52 E-value=3.6e-14 Score=116.79 Aligned_cols=129 Identities=19% Similarity=0.243 Sum_probs=89.3
Q ss_pred ceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----------c--cC------
Q 023675 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----------N--RD------ 148 (279)
Q Consensus 88 ~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----------~--~~------ 148 (279)
.|.+...+||++.+|++++++|.||||||||+++|+|.. .|++|+|++++..+..+- . ..
T Consensus 25 ~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPR 103 (267)
T COG4167 25 TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPR 103 (267)
T ss_pred hhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceEEECCccccccchHhhhhheeeeecCCccccChh
Confidence 445556779999999999999999999999999999999 899999999998773210 0 00
Q ss_pred --------------CCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675 149 --------------LSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (279)
Q Consensus 149 --------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l 213 (279)
-.+.++.+.+.+..-.+...++.+.. ......++.++++| +++|+++-+|++ |+.|+.+..+
T Consensus 104 l~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdha-n~~~~~la~~QKQRVaLARALIL~P~i--IIaDeAl~~L 180 (267)
T COG4167 104 LRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHA-NYYPHMLAPGQKQRVALARALILRPKI--IIADEALASL 180 (267)
T ss_pred hhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCcccc-ccchhhcCchhHHHHHHHHHHhcCCcE--EEehhhhhhc
Confidence 01222222222111111122222221 12445577788898 999999999988 8999999988
Q ss_pred hccChhh
Q 023675 214 EARDPKG 220 (279)
Q Consensus 214 ~~R~~~~ 220 (279)
+.-....
T Consensus 181 D~smrsQ 187 (267)
T COG4167 181 DMSMRSQ 187 (267)
T ss_pred cHHHHHH
Confidence 8766554
No 331
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.52 E-value=1.6e-13 Score=130.77 Aligned_cols=140 Identities=21% Similarity=0.175 Sum_probs=94.1
Q ss_pred CeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCC
Q 023675 81 NILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK 152 (279)
Q Consensus 81 ~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~ 152 (279)
.+.++++.+.|..+ .+|++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++|.+...... ..+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~~i~~~--~~l~ 97 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAALIAIS--SGLN 97 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEeeeEEec--cccC
Confidence 35666666666542 38999999999999999999999999999999 8999999999975311000 0110
Q ss_pred cc-cHHHHHH-----------HH-HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675 153 AE-DRVENIR-----------RI-GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (279)
Q Consensus 153 ~~-~~~~~~~-----------~v-~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~ 214 (279)
+. ...+.+. .. ..+..++...++. ..+..+|+++++| .++++++.+|++ ++||||+..++
T Consensus 98 ~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~L--LLLDEPTsgLD 175 (549)
T PRK13545 98 GQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDI--LVIDEALSVGD 175 (549)
T ss_pred CCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCE--EEEECCcccCC
Confidence 00 0000000 00 0011122222321 2345688899998 899999999998 99999999999
Q ss_pred ccChhhHHHHH
Q 023675 215 ARDPKGLYKLA 225 (279)
Q Consensus 215 ~R~~~~l~~~~ 225 (279)
....+.+++.+
T Consensus 176 ~~sr~~LlelL 186 (549)
T PRK13545 176 QTFTKKCLDKM 186 (549)
T ss_pred HHHHHHHHHHH
Confidence 88776655543
No 332
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.52 E-value=8.2e-14 Score=133.93 Aligned_cols=143 Identities=16% Similarity=0.151 Sum_probs=98.3
Q ss_pred CCeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCeecccc-----cccC
Q 023675 80 TNILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCRHG-----LNRD 148 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd~i~~~-----~~~~ 148 (279)
..++++++++.|.. +.||.+.+|++++|+|+||||||||+++|+|.+ .+ .+|.|+++|.++... ....
T Consensus 259 ~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~-~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CcccCCeEEEecccCCCCCCHHHHHhh
Confidence 35889999888864 349999999999999999999999999999976 54 699999999754211 1111
Q ss_pred CCCCcccH----------HHHH---------------H-HHHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHhC
Q 023675 149 LSFKAEDR----------VENI---------------R-RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSML 196 (279)
Q Consensus 149 ~~~~~~~~----------~~~~---------------~-~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~ 196 (279)
++|.+++. .... . ....+..++...++.. .+..+|+++++| .++++++
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~ 417 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALV 417 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHh
Confidence 22222111 0000 0 0001122222333322 234688899998 8999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+|++ ++||||++.++....+.+.+.+
T Consensus 418 ~~p~l--llLDEPt~gLD~~~~~~l~~~L 444 (490)
T PRK10938 418 KHPTL--LILDEPLQGLDPLNRQLVRRFV 444 (490)
T ss_pred cCCCE--EEEcCccccCCHHHHHHHHHHH
Confidence 99998 9999999999998877765543
No 333
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.52 E-value=1.4e-13 Score=133.34 Aligned_cols=142 Identities=17% Similarity=0.155 Sum_probs=98.0
Q ss_pred CeEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-Cee---ccc---
Q 023675 81 NILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDN---CRH--- 143 (279)
Q Consensus 81 ~i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~---i~~--- 143 (279)
.+++++++++|.. +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++ |.+ +..
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~-~p~~G~i~~~~g~~~~~~~~~~~ 357 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL-EPTSGEVNVRVGDEWVDMTKPGP 357 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEEecCCccccccccch
Confidence 5889999988841 238999999999999999999999999999999 8999999996 532 110
Q ss_pred ----ccccCCCCCccc--------HHHHHHH----------H-HHHHHHHHhCCcc---------hhcccCChHHHHH-H
Q 023675 144 ----GLNRDLSFKAED--------RVENIRR----------I-GEVAKLFADAGVI---------CIACLISPYRKDR-D 190 (279)
Q Consensus 144 ----~~~~~~~~~~~~--------~~~~~~~----------v-~~~~~~~~~~~~~---------~i~~~~~~~~~~r-~ 190 (279)
.....++|.+++ ..+.+.. . ..+...+...++. ..+..+|+++++| .
T Consensus 358 ~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~ 437 (520)
T TIGR03269 358 DGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVA 437 (520)
T ss_pred hhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHH
Confidence 001111221111 1111110 0 1122233334442 2345688999999 9
Q ss_pred HHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++++++.+|++ +++|||+..++....+.+.+.+
T Consensus 438 laral~~~p~l--LllDEPt~~LD~~~~~~l~~~l 470 (520)
T TIGR03269 438 LAQVLIKEPRI--VILDEPTGTMDPITKVDVTHSI 470 (520)
T ss_pred HHHHHhcCCCE--EEEeCCcccCCHHHHHHHHHHH
Confidence 99999999998 9999999999999887766544
No 334
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.51 E-value=2.9e-14 Score=113.82 Aligned_cols=134 Identities=20% Similarity=0.218 Sum_probs=88.9
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeecccc---------cc------------cCC
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHG---------LN------------RDL 149 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~~---------~~------------~~~ 149 (279)
+.|+++.+|+++-|+||||||||||+.-+.|.| .+. .|++++++.++..- +. .++
T Consensus 20 ~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~L-a~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl 98 (213)
T COG4136 20 NVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGAL-AGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSVGQNL 98 (213)
T ss_pred eeeEEecCCcEEEEECCCCccHHHHHHHHHhhc-ccCcceeeEEEECCeeccccchhhhheeeeecccccccccccccce
Confidence 448999999999999999999999999999999 544 79999999887310 00 000
Q ss_pred CC--CcccHHHHHHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh--
Q 023675 150 SF--KAEDRVENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG-- 220 (279)
Q Consensus 150 ~~--~~~~~~~~~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~-- 220 (279)
-| ...-..+.++.....+ +...++.. -.+.++++++-| ...|.++..|++ ++||||++.++..+++.
T Consensus 99 ~fAlp~~~KG~aRr~~a~aA--L~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~--lLLDEPFS~LD~ALR~qfR 174 (213)
T COG4136 99 LFALPATLKGNARRNAANAA--LERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKA--LLLDEPFSRLDVALRDQFR 174 (213)
T ss_pred EEecCcccccHHHHhhHHHH--HHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcce--eeeCCchhHHHHHHHHHHH
Confidence 01 0000011122222111 22222221 244578888888 889999999999 99999999998877654
Q ss_pred --HHHHHhCCCCCC
Q 023675 221 --LYKLAREGKVKG 232 (279)
Q Consensus 221 --l~~~~~~~~~~~ 232 (279)
++...+...+..
T Consensus 175 ~wVFs~~r~agiPt 188 (213)
T COG4136 175 QWVFSEVRAAGIPT 188 (213)
T ss_pred HHHHHHHHhcCCCe
Confidence 556666555543
No 335
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.51 E-value=1.4e-14 Score=127.32 Aligned_cols=130 Identities=16% Similarity=0.213 Sum_probs=86.2
Q ss_pred cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCCCccc--------HHHH
Q 023675 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSFKAED--------RVEN 159 (279)
Q Consensus 92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~~~~~--------~~~~ 159 (279)
.++.||++.+|++++|+|+||||||||+++|+|.+ .+ +|.|+++|.++... ....++|.++. ..+.
T Consensus 12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 35679999999999999999999999999999988 44 89999999876321 00111111110 0111
Q ss_pred HHH-----------HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCC-------CCCccEEEEeCCccchhcc
Q 023675 160 IRR-----------IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLP-------EGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 160 ~~~-----------v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~-------~~~~i~i~ld~p~~~l~~R 216 (279)
+.. ...+..++...++. ..+..+|+++++| .++++++. +|++ +++|||+..++..
T Consensus 90 l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~l--lllDEPt~~LD~~ 167 (248)
T PRK03695 90 LTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQL--LLLDEPMNSLDVA 167 (248)
T ss_pred HHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCE--EEEcCCcccCCHH
Confidence 000 00112222222332 2345678889888 88999986 5577 9999999999998
Q ss_pred ChhhHHHHH
Q 023675 217 DPKGLYKLA 225 (279)
Q Consensus 217 ~~~~l~~~~ 225 (279)
..+.+++.+
T Consensus 168 ~~~~l~~~L 176 (248)
T PRK03695 168 QQAALDRLL 176 (248)
T ss_pred HHHHHHHHH
Confidence 776655443
No 336
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.51 E-value=1e-13 Score=123.06 Aligned_cols=127 Identities=20% Similarity=0.167 Sum_probs=84.2
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc-ccHHHHHH----------
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA-EDRVENIR---------- 161 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~-~~~~~~~~---------- 161 (279)
...+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|....... ...+.. ....+.+.
T Consensus 41 ~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~-~p~~G~I~~~g~~~~~~~--~~~~~~~~tv~enl~~~~~~~~~~~ 117 (264)
T PRK13546 41 DDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVGKVDRNGEVSVIAI--SAGLSGQLTGIENIEFKMLCMGFKR 117 (264)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEECCEEeEEec--ccCCCCCCcHHHHHHHHHHHcCCCH
Confidence 4568999999999999999999999999999999 899999999996311000 001100 00000000
Q ss_pred -HHH-HHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 162 -RIG-EVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 162 -~v~-~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
... ....++...++. ..+..+|+++++| .++++++.+|++ +++|||+..++....+.+++.
T Consensus 118 ~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~i--LlLDEPt~gLD~~~~~~l~~~ 185 (264)
T PRK13546 118 KEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDI--LVIDEALSVGDQTFAQKCLDK 185 (264)
T ss_pred HHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCE--EEEeCccccCCHHHHHHHHHH
Confidence 000 011111111221 1344578888888 899999999998 999999999998766655543
No 337
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.51 E-value=1.6e-13 Score=135.84 Aligned_cols=143 Identities=16% Similarity=0.167 Sum_probs=95.0
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-c---cc-cccCCCC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-R---HG-LNRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~---~~-~~~~~~~ 151 (279)
+++++++++|.. +.||.+++|++++|+|+||||||||+++|+|.+ .|++|.|.++++.. . .. ......+
T Consensus 4 l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~p~~G~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-LLDDGRIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred EEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEeCCCCEEEEeccCCCCCCCCC
Confidence 567777777764 449999999999999999999999999999999 89999999987421 0 00 0000111
Q ss_pred CcccHH--------------------------HHHHHH----------------HHHHHHHHhCCcc--hhcccCChHHH
Q 023675 152 KAEDRV--------------------------ENIRRI----------------GEVAKLFADAGVI--CIACLISPYRK 187 (279)
Q Consensus 152 ~~~~~~--------------------------~~~~~v----------------~~~~~~~~~~~~~--~i~~~~~~~~~ 187 (279)
..+... ..+... ..+..++...++. ..+..+|+|++
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~LSgGek 162 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWL 162 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCCCCchhhcCHHHH
Confidence 111000 000000 0111122222221 12445788999
Q ss_pred HH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 188 DR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 188 ~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
+| .++++++.+|++ ++||||++.|+......+.+.+..
T Consensus 163 qRv~LAraL~~~P~l--LLLDEPt~~LD~~~~~~L~~~L~~ 201 (635)
T PRK11147 163 RKAALGRALVSNPDV--LLLDEPTNHLDIETIEWLEGFLKT 201 (635)
T ss_pred HHHHHHHHHhcCCCE--EEEcCCCCccCHHHHHHHHHHHHh
Confidence 98 999999999998 999999999999887766665543
No 338
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.51 E-value=2e-13 Score=133.04 Aligned_cols=142 Identities=18% Similarity=0.138 Sum_probs=94.5
Q ss_pred eEEeecceeec-C-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCCCC-Cc
Q 023675 82 ILWHKNSVDKR-D-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDLSF-KA 153 (279)
Q Consensus 82 i~~~~~~~~~~-~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~~~-~~ 153 (279)
++++|++++|. . +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|.+++.. +.. +.....+ ..
T Consensus 5 i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~~~i~~-v~Q~~~~~~~ 82 (552)
T TIGR03719 5 YTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFNGEARPAPGIKVGY-LPQEPQLDPT 82 (552)
T ss_pred EEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEecCCCEEEE-EeccCCCCCC
Confidence 66777877775 3 349999999999999999999999999999999 8999999987531 110 0000000 00
Q ss_pred ccHHHHHHH-----------------------------------H-------------HHHHHHHHhCCc---chhcccC
Q 023675 154 EDRVENIRR-----------------------------------I-------------GEVAKLFADAGV---ICIACLI 182 (279)
Q Consensus 154 ~~~~~~~~~-----------------------------------v-------------~~~~~~~~~~~~---~~i~~~~ 182 (279)
....+.+.. + ..+...+...++ ...+..+
T Consensus 83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~L 162 (552)
T TIGR03719 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKL 162 (552)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhc
Confidence 000000000 0 000111111222 1234468
Q ss_pred ChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 183 SPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 183 ~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
|+++++| .++++++.+|++ ++||||++.++....+.+.+.+..
T Consensus 163 SgGqkqrv~la~al~~~p~l--LLLDEPt~~LD~~~~~~l~~~L~~ 206 (552)
T TIGR03719 163 SGGERRRVALCRLLLSKPDM--LLLDEPTNHLDAESVAWLEQHLQE 206 (552)
T ss_pred CHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCChHHHHHHHHHHHh
Confidence 8999999 999999999998 999999999999988877766553
No 339
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.51 E-value=9.7e-14 Score=115.80 Aligned_cols=118 Identities=20% Similarity=0.217 Sum_probs=82.2
Q ss_pred eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHH
Q 023675 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAK 168 (279)
Q Consensus 89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~ 168 (279)
+...++.||++++|++++|+||||||||||++++.. .+|.+.+++..-.. ....+.|..+ . .
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~~~-~~~~~~~~~q-----~-------~ 69 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLPKF-SRNKLIFIDQ-----L-------Q 69 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccccc-ccccEEEEhH-----H-------H
Confidence 344566799999999999999999999999998842 47888888763211 0111222222 1 1
Q ss_pred HHHhCCc-----chhcccCChHHHHH-HHHHHhCCC--CCccEEEEeCCccchhccChhhHHHHHh
Q 023675 169 LFADAGV-----ICIACLISPYRKDR-DACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 169 ~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
.+...++ ......+++++++| .++++++.+ |++ +++|||+..++....+.+.+.++
T Consensus 70 ~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~l--lLlDEPt~~LD~~~~~~l~~~l~ 133 (176)
T cd03238 70 FLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTL--FILDEPSTGLHQQDINQLLEVIK 133 (176)
T ss_pred HHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 1122222 22345678888888 899999999 888 99999999999988777665443
No 340
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.50 E-value=1.4e-13 Score=114.64 Aligned_cols=158 Identities=20% Similarity=0.187 Sum_probs=99.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc-------CCCCCc------c-cHHHHHHHHHHH
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-------DLSFKA------E-DRVENIRRIGEV 166 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~-------~~~~~~------~-~~~~~~~~v~~~ 166 (279)
+|.+++|+|+|||||||+++.|+..+..+ .+.++.|++...+.. .+.+.. + .....+......
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~---~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~ 77 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEP---WLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEA 77 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCC---ccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHH
Confidence 47899999999999999999999987422 345566666432211 111111 1 111223333334
Q ss_pred HHHHHhCCcchhcccCCh-HHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccc-cCcCCCCC
Q 023675 167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGI-DDPYEPPL 244 (279)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~-~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~-r~~~~~~~ 244 (279)
+..+...|..++++.... ....++.++.+.. .++..|++++|.+.+.+|..++ .+....+... ...++.+.
T Consensus 78 ~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~-~~~~~v~l~~~~~~l~~R~~~R------~~~~~~~~~~~~~~~~~~~ 150 (175)
T cd00227 78 VAAMARAGANVIADDVFLGRAALQDCWRSFVG-LDVLWVGVRCPGEVAEGRETAR------GDRVPGQARKQARVVHAGV 150 (175)
T ss_pred HHHHHhCCCcEEEeeeccCCHHHHHHHHHhcC-CCEEEEEEECCHHHHHHHHHhc------CCccchHHHHHHHHhcCCC
Confidence 444567788888776544 3444555665544 4677899999999999998543 2222222221 12233344
Q ss_pred CCceEEEccCCCCCCHHHHHHHHHHHH
Q 023675 245 NCEIVLKQMGDDCPSPADMVETVVSYL 271 (279)
Q Consensus 245 ~a~~~i~~~~~~~~~~~e~~~~Il~~l 271 (279)
..+++||| +..++++++++|++.|
T Consensus 151 ~~dl~iDt---s~~s~~e~a~~i~~~l 174 (175)
T cd00227 151 EYDLEVDT---THKTPIECARAIAARV 174 (175)
T ss_pred cceEEEEC---CCCCHHHHHHHHHHhc
Confidence 46799999 8889999999999876
No 341
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.50 E-value=8e-14 Score=135.23 Aligned_cols=142 Identities=17% Similarity=0.204 Sum_probs=98.9
Q ss_pred CeEEeecceeec----------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc
Q 023675 81 NILWHKNSVDKR----------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG 144 (279)
Q Consensus 81 ~i~~~~~~~~~~----------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~ 144 (279)
.++++++++.|. ++.||++++|++++|+|+||||||||+++|+|++ . .+|.|+++|.++...
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~i~~~g~~i~~~ 352 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGEIWFDGQPLHNL 352 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcEEEECCEEcccc
Confidence 478888888884 2239999999999999999999999999999998 4 799999999876321
Q ss_pred -------cccCCCCCcccH----------HHHHHH--------------HHHHHHHHHhCCcc-----hhcccCChHHHH
Q 023675 145 -------LNRDLSFKAEDR----------VENIRR--------------IGEVAKLFADAGVI-----CIACLISPYRKD 188 (279)
Q Consensus 145 -------~~~~~~~~~~~~----------~~~~~~--------------v~~~~~~~~~~~~~-----~i~~~~~~~~~~ 188 (279)
....++|.+++. .+.+.. ...+...+...++. .....+|+++++
T Consensus 353 ~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~q 432 (529)
T PRK15134 353 NRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQ 432 (529)
T ss_pred chhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHH
Confidence 011223222211 111100 01112223333442 134568899999
Q ss_pred H-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 189 r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
| .++++++.+|++ ++||||+..++......+++.++
T Consensus 433 rv~la~al~~~p~l--lllDEPt~~LD~~~~~~l~~~l~ 469 (529)
T PRK15134 433 RIAIARALILKPSL--IILDEPTSSLDKTVQAQILALLK 469 (529)
T ss_pred HHHHHHHHhCCCCE--EEeeCCccccCHHHHHHHHHHHH
Confidence 9 999999999998 99999999999998877665443
No 342
>PLN03130 ABC transporter C family member; Provisional
Probab=99.50 E-value=6e-14 Score=150.48 Aligned_cols=142 Identities=20% Similarity=0.226 Sum_probs=99.3
Q ss_pred CCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCc-cEEEEcCeec--c--cc--
Q 023675 80 TNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNC--R--HG-- 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~-G~i~ldgd~i--~--~~-- 144 (279)
..|+++|++|+|+. +.||++++|+.++|+|++|||||||+++|.|.+ +|.+ |.|.+.+.-- . .+
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~GG~I~l~~~Iayv~Q~p~Lf 691 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDASVVIRGTVAYVPQVSWIF 691 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-ccCCCceEEEcCeEEEEcCccccC
Confidence 46999999999963 238999999999999999999999999999999 8888 8998766321 0 01
Q ss_pred ---cccCCCCCcccHHHHHHHHHHHHHHHHh-----CCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 145 ---LNRDLSFKAEDRVENIRRIGEVAKLFAD-----AGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 145 ---~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
+..++-+...-..+.+..+.+.+.+-.+ .|. ...+..+|+||++| .+||++.+++++ ++||+|++
T Consensus 692 ngTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I--lLLDEptS 769 (1622)
T PLN03130 692 NATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV--YIFDDPLS 769 (1622)
T ss_pred CCCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE--EEECCCcc
Confidence 1111222111112233333333322111 122 12344689999999 999999999988 99999999
Q ss_pred chhccChhhHHHH
Q 023675 212 VCEARDPKGLYKL 224 (279)
Q Consensus 212 ~l~~R~~~~l~~~ 224 (279)
.++....+.+++.
T Consensus 770 ALD~~~~~~I~~~ 782 (1622)
T PLN03130 770 ALDAHVGRQVFDK 782 (1622)
T ss_pred ccCHHHHHHHHHH
Confidence 9999877766543
No 343
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.50 E-value=1.4e-13 Score=132.79 Aligned_cols=141 Identities=16% Similarity=0.199 Sum_probs=97.2
Q ss_pred CeEEeeccee-ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcc
Q 023675 81 NILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (279)
Q Consensus 81 ~i~~~~~~~~-~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~ 154 (279)
.++++++++. ..++.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++|+++... ....++|.++
T Consensus 257 ~l~~~~~~~~~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q 335 (501)
T PRK11288 257 RLRLDGLKGPGLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPE 335 (501)
T ss_pred EEEEeccccCCcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCEEcCc
Confidence 3677777643 235679999999999999999999999999999999 89999999999876321 0011111111
Q ss_pred c-----------HHHHH------------------HHHHHHHHHHHhCCc-----chhcccCChHHHHH-HHHHHhCCCC
Q 023675 155 D-----------RVENI------------------RRIGEVAKLFADAGV-----ICIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 155 ~-----------~~~~~------------------~~v~~~~~~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
. ..+.+ .........+...++ ...+..+|+++++| .++++++.+|
T Consensus 336 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p 415 (501)
T PRK11288 336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDM 415 (501)
T ss_pred CHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCC
Confidence 1 00100 000111222223333 12355688999999 8999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHH
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++ ++||||+..++......+++.
T Consensus 416 ~l--llLDEPt~~LD~~~~~~l~~~ 438 (501)
T PRK11288 416 KV--ILLDEPTRGIDVGAKHEIYNV 438 (501)
T ss_pred CE--EEEcCCCCCCCHhHHHHHHHH
Confidence 98 999999999999988776544
No 344
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.50 E-value=2.1e-13 Score=134.92 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=97.6
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-ccCC-CCCc
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NRDL-SFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-~~~~-~~~~ 153 (279)
.+++++++++|.++ .||.+.+|++++|+|+||||||||+++|+|.+ .|++|.|++ |..+.-+. .... .+.+
T Consensus 319 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~-~~~~~i~y~~q~~~~l~~ 396 (635)
T PRK11147 319 VFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSGRIHC-GTKLEVAYFDQHRAELDP 396 (635)
T ss_pred eEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEE-CCCcEEEEEeCcccccCC
Confidence 58999999998653 49999999999999999999999999999999 899999998 44331110 0000 0100
Q ss_pred c-cHHHHHHH----------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 154 E-DRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 154 ~-~~~~~~~~----------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
. ...+.+.. ...+...+...++. ..+..+|+|+++| .++++++.+|++ ++||||+..++..
T Consensus 397 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~l--LlLDEPt~~LD~~ 474 (635)
T PRK11147 397 EKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNL--LILDEPTNDLDVE 474 (635)
T ss_pred CCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHH
Confidence 0 00111100 01122222233331 2345689999999 899999999998 9999999999998
Q ss_pred ChhhHHHHHhC
Q 023675 217 DPKGLYKLARE 227 (279)
Q Consensus 217 ~~~~l~~~~~~ 227 (279)
....+.+.+..
T Consensus 475 ~~~~l~~~l~~ 485 (635)
T PRK11147 475 TLELLEELLDS 485 (635)
T ss_pred HHHHHHHHHHh
Confidence 87766665553
No 345
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.50 E-value=2.2e-13 Score=117.08 Aligned_cols=126 Identities=20% Similarity=0.128 Sum_probs=82.7
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE-EcCeecccccccCCCCCcc-cHHHHHHHHH------
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDNCRHGLNRDLSFKAE-DRVENIRRIG------ 164 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~-ldgd~i~~~~~~~~~~~~~-~~~~~~~~v~------ 164 (279)
++.||++++|++++|+|+||||||||+++|+|.+ .|++|.|. +++..+.-+.. ..+.+. ...+++....
T Consensus 4 ~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~~~~~~--~~l~~~ltv~enl~~~~~~~~~~ 80 (213)
T PRK15177 4 DKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDALPLGAN--SFILPGLTGEENARMMASLYGLD 80 (213)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCceeccccc--cccCCcCcHHHHHHHHHHHcCCC
Confidence 4568899999999999999999999999999999 89999997 88765421100 001000 1111111000
Q ss_pred --HHHHH-HHhCC----cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 165 --EVAKL-FADAG----VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 165 --~~~~~-~~~~~----~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
+.... ....+ ....+...++++++| .++++++.+|++ +++|||+..++....+.+.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~l--lllDEP~~~lD~~~~~~~~~ 145 (213)
T PRK15177 81 GDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRL--YIADGKLYTGDNATQLRMQA 145 (213)
T ss_pred HHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCE--EEECCCCccCCHHHHHHHHH
Confidence 00000 00011 112344578888888 899999999998 99999999988776665544
No 346
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.50 E-value=2.2e-13 Score=129.43 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=96.7
Q ss_pred eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC---CccEEEEcCeecccc-----
Q 023675 82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGDNCRHG----- 144 (279)
Q Consensus 82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~---~~G~i~ldgd~i~~~----- 144 (279)
++++|+++.|. ++.||++.+||+++|+|.|||||||++++|.|+++.. .+|+|.++|.++...
T Consensus 6 L~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~ 85 (539)
T COG1123 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREM 85 (539)
T ss_pred EEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHH
Confidence 45555555443 4559999999999999999999999999999999433 289999999876311
Q ss_pred ---cccCCCCCcccH----------HHHH-------------HHHHHHHHHHHhCCcc------hhcccCChHHHHH-HH
Q 023675 145 ---LNRDLSFKAEDR----------VENI-------------RRIGEVAKLFADAGVI------CIACLISPYRKDR-DA 191 (279)
Q Consensus 145 ---~~~~~~~~~~~~----------~~~~-------------~~v~~~~~~~~~~~~~------~i~~~~~~~~~~r-~~ 191 (279)
....+++.+++. ..++ ........++..-++- .+...+|++++|| -+
T Consensus 86 r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~i 165 (539)
T COG1123 86 RKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMI 165 (539)
T ss_pred HHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHH
Confidence 111222222211 0000 0111222333332321 2555689999999 78
Q ss_pred HHHhCCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
|++++.+|++ +++|||+..|+.-.+..+++.++
T Consensus 166 AmALa~~P~L--LIaDEPTTaLDvt~q~qIL~llk 198 (539)
T COG1123 166 AMALALKPKL--LIADEPTTALDVTTQAQILDLLK 198 (539)
T ss_pred HHHHhCCCCE--EEECCCccccCHHHHHHHHHHHH
Confidence 9999999998 99999999999988877655443
No 347
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.50 E-value=1.4e-13 Score=121.47 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=83.0
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE-----------EcCeeccccc----cc--CCCCCcc---
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHGL----NR--DLSFKAE--- 154 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~-----------ldgd~i~~~~----~~--~~~~~~~--- 154 (279)
.+ .+.+|++++|+|+||||||||+++|+|++ .|++|.|+ ++|.++.... .. .+++..+
T Consensus 20 i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (255)
T cd03236 20 LP-VPREGQVLGLVGPNGIGKSTALKILAGKL-KPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVD 97 (255)
T ss_pred CC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhc
Confidence 35 48999999999999999999999999999 89999996 7787663210 00 0111000
Q ss_pred --c------HHHHH---HHHHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 155 --D------RVENI---RRIGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 155 --~------~~~~~---~~v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
. ....+ ........++...++. .....+++++++| .++++++.+|++ +++|||++.++....
T Consensus 98 ~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~i--lllDEPts~LD~~~~ 175 (255)
T cd03236 98 LIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADF--YFFDEPSSYLDIKQR 175 (255)
T ss_pred cCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCCCCCHHHH
Confidence 0 00000 0001122223333332 2334578888888 999999999988 999999999999877
Q ss_pred hhHHH
Q 023675 219 KGLYK 223 (279)
Q Consensus 219 ~~l~~ 223 (279)
+.++.
T Consensus 176 ~~l~~ 180 (255)
T cd03236 176 LNAAR 180 (255)
T ss_pred HHHHH
Confidence 65444
No 348
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=2.8e-13 Score=111.90 Aligned_cols=124 Identities=18% Similarity=0.194 Sum_probs=83.5
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc----------cCCCCCc----ccHHHH
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN----------RDLSFKA----EDRVEN 159 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~----------~~~~~~~----~~~~~~ 159 (279)
+.+|++.+|+.+.|.|+||||||||+++|+|++ .|.+|.|++++..+..... -..++.. .+.-.+
T Consensus 20 ~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl-~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F 98 (209)
T COG4133 20 DLSFTLNAGEALQITGPNGAGKTTLLRILAGLL-RPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHF 98 (209)
T ss_pred ceeEEEcCCCEEEEECCCCCcHHHHHHHHHccc-CCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHH
Confidence 348899999999999999999999999999999 9999999999987743211 0111111 111112
Q ss_pred HHHHHH------HHHHHHhCCcc---h-hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 160 IRRIGE------VAKLFADAGVI---C-IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 160 ~~~v~~------~~~~~~~~~~~---~-i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
+..+.. +...+...|+. . -..++|.+++.| +++|-.+..+++ ++||||+..+++.....
T Consensus 99 ~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL--WiLDEP~taLDk~g~a~ 168 (209)
T COG4133 99 WQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL--WILDEPFTALDKEGVAL 168 (209)
T ss_pred HHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc--eeecCcccccCHHHHHH
Confidence 222111 11111222222 2 234577777777 888888888788 89999999998876554
No 349
>PLN03211 ABC transporter G-25; Provisional
Probab=99.48 E-value=1.1e-13 Score=136.98 Aligned_cols=129 Identities=21% Similarity=0.213 Sum_probs=88.2
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC--ccEEEEcCeecccccccCCCCCccc--------HHHHHHH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCRHGLNRDLSFKAED--------RVENIRR 162 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~--~G~i~ldgd~i~~~~~~~~~~~~~~--------~~~~~~~ 162 (279)
++.|+++++|++++|+|+||||||||+++|+|++ .++ +|.|.+||.++.......++|.+++ .++.+..
T Consensus 85 ~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~-~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~ 163 (659)
T PLN03211 85 NGVTGMASPGEILAVLGPSGSGKSTLLNALAGRI-QGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVF 163 (659)
T ss_pred eCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHH
Confidence 3459999999999999999999999999999998 564 8999999987632211112221111 1111100
Q ss_pred ---------------HHHHHHHHHhCCcch---------hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675 163 ---------------IGEVAKLFADAGVIC---------IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (279)
Q Consensus 163 ---------------v~~~~~~~~~~~~~~---------i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~ 217 (279)
...+..++...++.. ....+|+++++| .++++++.+|++ ++||||+..++...
T Consensus 164 ~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~i--LlLDEPtsgLD~~~ 241 (659)
T PLN03211 164 CSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSL--LILDEPTSGLDATA 241 (659)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCE--EEEeCCCCCcCHHH
Confidence 011122233333322 133588899998 999999999988 99999999999888
Q ss_pred hhhHHHH
Q 023675 218 PKGLYKL 224 (279)
Q Consensus 218 ~~~l~~~ 224 (279)
...+.+.
T Consensus 242 ~~~l~~~ 248 (659)
T PLN03211 242 AYRLVLT 248 (659)
T ss_pred HHHHHHH
Confidence 7765543
No 350
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.48 E-value=3.1e-13 Score=133.73 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=98.5
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe-ecccccccC--CCCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRD--LSFK 152 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd-~i~~~~~~~--~~~~ 152 (279)
.+++++++++|.+ +.||.+.+|++++|+|+||||||||+++|+|.+ .|++|.|.+++. .+.. +... ..+.
T Consensus 312 ~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~i~~~~~~~igy-~~Q~~~~~l~ 389 (638)
T PRK10636 312 LLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGEIGLAKGIKLGY-FAQHQLEFLR 389 (638)
T ss_pred eEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEEECCCEEEEE-ecCcchhhCC
Confidence 5889999998864 349999999999999999999999999999999 899999999742 2210 0000 0011
Q ss_pred cc-cHHHHHHH------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675 153 AE-DRVENIRR------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 153 ~~-~~~~~~~~------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
.. .....+.. ...+...+...++. ..+..+|+|+++| .++++++.+|++ ++||||+..|+.....
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l--LlLDEPt~~LD~~~~~ 467 (638)
T PRK10636 390 ADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL--LLLDEPTNHLDLDMRQ 467 (638)
T ss_pred ccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHHHH
Confidence 11 00111100 01122223333332 1345689999999 899999999998 9999999999998877
Q ss_pred hHHHHHhC
Q 023675 220 GLYKLARE 227 (279)
Q Consensus 220 ~l~~~~~~ 227 (279)
.+.+.+..
T Consensus 468 ~l~~~L~~ 475 (638)
T PRK10636 468 ALTEALID 475 (638)
T ss_pred HHHHHHHH
Confidence 76665543
No 351
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.48 E-value=4.5e-13 Score=130.63 Aligned_cols=143 Identities=15% Similarity=0.132 Sum_probs=98.1
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCC-CCCc
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDL-SFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~-~~~~ 153 (279)
.+++++++++|.++ .||.+++|++++|+|+||||||||+++|+|.+ .|.+|.|+++++ +.-+ +.... .+.+
T Consensus 322 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i~~~~~-~~i~~v~q~~~~~~~ 399 (552)
T TIGR03719 322 VIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGTIKIGET-VKLAYVDQSRDALDP 399 (552)
T ss_pred EEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEEEECCc-eEEEEEeCCccccCC
Confidence 58899999988643 49999999999999999999999999999999 899999998543 2100 00000 0000
Q ss_pred -ccHHHHHHH----------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 154 -EDRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 154 -~~~~~~~~~----------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
....+.+.. .......+...++. ..+..+|+|+++| .++++++.+|++ ++||||+..++..
T Consensus 400 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~l--llLDEPt~~LD~~ 477 (552)
T TIGR03719 400 NKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNV--LLLDEPTNDLDVE 477 (552)
T ss_pred CCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCE--EEEeCCCCCCCHH
Confidence 000000000 00011223333332 1345688999998 999999999998 9999999999998
Q ss_pred ChhhHHHHHhC
Q 023675 217 DPKGLYKLARE 227 (279)
Q Consensus 217 ~~~~l~~~~~~ 227 (279)
....+.+.+..
T Consensus 478 ~~~~l~~~l~~ 488 (552)
T TIGR03719 478 TLRALEEALLE 488 (552)
T ss_pred HHHHHHHHHHH
Confidence 88877766554
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=99.48 E-value=9.5e-14 Score=148.45 Aligned_cols=142 Identities=19% Similarity=0.230 Sum_probs=95.2
Q ss_pred CCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE-EEcCeec--c------
Q 023675 80 TNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-ILDGDNC--R------ 142 (279)
Q Consensus 80 ~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i-~ldgd~i--~------ 142 (279)
..|+++|++|+|+. +.||++++|+.++|+|++|||||||+++|.|.+ +|.+|.+ .+.+.-- .
T Consensus 613 ~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~G~i~~~~~~Iayv~Q~p~Lf 691 (1495)
T PLN03232 613 PAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGEL-SHAETSSVVIRGSVAYVPQVSWIF 691 (1495)
T ss_pred CcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-cccCCCEEEecCcEEEEcCccccc
Confidence 46999999999964 228999999999999999999999999999999 7777643 3333110 0
Q ss_pred -cccccCCCCCcccHHHHHHHHHHHHHH---HH--hCCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 143 -HGLNRDLSFKAEDRVENIRRIGEVAKL---FA--DAGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 143 -~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~--~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
..+..++.+......+.+..+.+.+.+ +. ..|. ...+..+|+||++| .+||++.+++++ ++||+|++
T Consensus 692 ~gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I--lLLDEptS 769 (1495)
T PLN03232 692 NATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI--YIFDDPLS 769 (1495)
T ss_pred cccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE--EEEcCCcc
Confidence 001111122111111223333232222 11 1122 12344689999999 999999999998 99999999
Q ss_pred chhccChhhHHHH
Q 023675 212 VCEARDPKGLYKL 224 (279)
Q Consensus 212 ~l~~R~~~~l~~~ 224 (279)
.++....+.+++.
T Consensus 770 aLD~~t~~~I~~~ 782 (1495)
T PLN03232 770 ALDAHVAHQVFDS 782 (1495)
T ss_pred ccCHHHHHHHHHH
Confidence 9999887766654
No 353
>PRK13409 putative ATPase RIL; Provisional
Probab=99.47 E-value=5.3e-13 Score=130.71 Aligned_cols=140 Identities=15% Similarity=0.051 Sum_probs=94.3
Q ss_pred CeEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-c
Q 023675 81 NILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-D 155 (279)
Q Consensus 81 ~i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-~ 155 (279)
.+++++++++|.+ ..+|++.+|++++|+|+||||||||+++|+|.+ .|++|.|.++- .+.. .......... .
T Consensus 340 ~l~~~~ls~~~~~~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~-~p~~G~I~~~~-~i~y-~~Q~~~~~~~~t 416 (590)
T PRK13409 340 LVEYPDLTKKLGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEGEVDPEL-KISY-KPQYIKPDYDGT 416 (590)
T ss_pred EEEEcceEEEECCEEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEee-eEEE-ecccccCCCCCc
Confidence 4788888888854 347888999999999999999999999999999 89999998862 1210 0000010000 0
Q ss_pred HHHHHHHH-------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 156 RVENIRRI-------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 156 ~~~~~~~v-------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
..+.+... .....++...++.. .+..+|+++++| .++++++.+|++ ++||||+..++......+.+
T Consensus 417 v~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~l--lLLDEPt~~LD~~~~~~l~~ 494 (590)
T PRK13409 417 VEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADL--YLLDEPSAHLDVEQRLAVAK 494 (590)
T ss_pred HHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCE--EEEeCCccCCCHHHHHHHHH
Confidence 11111100 01112223333322 345689999999 899999999998 99999999999887776554
Q ss_pred HH
Q 023675 224 LA 225 (279)
Q Consensus 224 ~~ 225 (279)
.+
T Consensus 495 ~l 496 (590)
T PRK13409 495 AI 496 (590)
T ss_pred HH
Confidence 43
No 354
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.47 E-value=5.7e-13 Score=129.99 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=98.1
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCC-CCCc
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDL-SFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~-~~~~ 153 (279)
.+++++++++|.++ .||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|+++++ ++-+ +.... .+.+
T Consensus 324 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~i~~~~~-~~i~~v~q~~~~~~~ 401 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE-QPDSGTIKIGET-VKLAYVDQSRDALDP 401 (556)
T ss_pred EEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCc-eEEEEEeCchhhcCC
Confidence 58999999988643 49999999999999999999999999999999 899999999543 2100 00000 0000
Q ss_pred -ccHHHHHHH----------HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 154 -EDRVENIRR----------IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 154 -~~~~~~~~~----------v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
....+.+.. .......+...++. ..+..+|+|+++| .++++++.+|++ ++||||+..++..
T Consensus 402 ~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~l--llLDEPt~~LD~~ 479 (556)
T PRK11819 402 NKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNV--LLLDEPTNDLDVE 479 (556)
T ss_pred CCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHH
Confidence 000011000 00011123333332 1345688999999 899999999998 9999999999998
Q ss_pred ChhhHHHHHhC
Q 023675 217 DPKGLYKLARE 227 (279)
Q Consensus 217 ~~~~l~~~~~~ 227 (279)
....+.+.+..
T Consensus 480 ~~~~l~~~l~~ 490 (556)
T PRK11819 480 TLRALEEALLE 490 (556)
T ss_pred HHHHHHHHHHh
Confidence 88777766554
No 355
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.47 E-value=3.2e-13 Score=113.81 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=87.0
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-----------c--------------
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----------R-------------- 147 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-----------~-------------- 147 (279)
+..++.+.+|+++.++|.|||||||+++.|+|.+ .|++|.|++||.++.+.-. .
T Consensus 23 ~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l-~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieE 101 (263)
T COG1101 23 NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEE 101 (263)
T ss_pred hcCceeecCCceEEEEcCCCccHHHHHHHhhCcc-ccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccccHHH
Confidence 3459999999999999999999999999999999 9999999999999953210 0
Q ss_pred ----------CCCCCcccHHHHHHHH-HHHHHHHHhCC----cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 148 ----------DLSFKAEDRVENIRRI-GEVAKLFADAG----VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 148 ----------~~~~~~~~~~~~~~~v-~~~~~~~~~~~----~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
.-++...-..++.... ..+..+ ..| +..-+..+|++++|- ..+.+.+..|++ ++|||-++
T Consensus 102 Nl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l--~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pki--LLLDEHTA 177 (263)
T COG1101 102 NLALAESRGKKRGLSSALNERRRSSFRERLARL--GLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKI--LLLDEHTA 177 (263)
T ss_pred HHHHHHhcCcccccchhhhHHHHHHHHHHHhhc--ccchhhhhcChhhhccchHHHHHHHHHHhcCCCcE--EEecchhh
Confidence 0011110000000000 011111 112 122455688888876 888899999988 99999999
Q ss_pred chhccChhhHHH
Q 023675 212 VCEARDPKGLYK 223 (279)
Q Consensus 212 ~l~~R~~~~l~~ 223 (279)
.++++...-+++
T Consensus 178 ALDPkta~~vm~ 189 (263)
T COG1101 178 ALDPKTAEFVME 189 (263)
T ss_pred cCCcchHHHHHH
Confidence 999998776553
No 356
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.46 E-value=3.7e-13 Score=133.49 Aligned_cols=141 Identities=19% Similarity=0.218 Sum_probs=97.2
Q ss_pred CeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------
Q 023675 81 NILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------- 144 (279)
Q Consensus 81 ~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------- 144 (279)
.++++|++++|.. +.||++++|++++|+|+||||||||+++|+|++ +|++|.+++||+++...
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-KPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEcCcCCHHHHHH
Confidence 3677787777742 338999999999999999999999999999999 89999999999887421
Q ss_pred -cccCCCCCcc--------cHHHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675 145 -LNRDLSFKAE--------DRVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 145 -~~~~~~~~~~--------~~~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
....++|.++ ...+.+. ........+...++.. ....+++++++| .++++++.+
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~ 162 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNG 162 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 0111111111 0011110 0011122222233322 344578888888 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
|++ +++|||+..++....+.+.+.
T Consensus 163 P~l--LllDEP~~gLD~~s~~~l~~l 186 (648)
T PRK10535 163 GQV--ILADEPTGALDSHSGEEVMAI 186 (648)
T ss_pred CCE--EEEECCCCCCCHHHHHHHHHH
Confidence 998 999999999999887765443
No 357
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.46 E-value=4.6e-13 Score=128.73 Aligned_cols=134 Identities=21% Similarity=0.204 Sum_probs=90.2
Q ss_pred CeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe-ecccccccCCCCCcc
Q 023675 81 NILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD-NCRHGLNRDLSFKAE 154 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd-~i~~~~~~~~~~~~~ 154 (279)
.|.+.+++.+|.++. ++++.+|+.++|||+||+|||||+++|+|.+ .|+.|.|...+. .+. .+.....+...
T Consensus 3 ~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~i~~~~~~~v~-~l~Q~~~~~~~ 80 (530)
T COG0488 3 MITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGEVTRPKGLRVG-YLSQEPPLDPE 80 (530)
T ss_pred eEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCeEeecCCceEE-EeCCCCCcCCC
Confidence 466778888886543 9999999999999999999999999999999 899999988874 221 11111111110
Q ss_pred ------------cHHHHHHHH-------------------------------HHHHHHHHhCCcch---hcccCChHHHH
Q 023675 155 ------------DRVENIRRI-------------------------------GEVAKLFADAGVIC---IACLISPYRKD 188 (279)
Q Consensus 155 ------------~~~~~~~~v-------------------------------~~~~~~~~~~~~~~---i~~~~~~~~~~ 188 (279)
...+..+.. ..+..++...++.. .+..+|++++.
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~ 160 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRR 160 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHH
Confidence 000000000 11222222223222 34567888888
Q ss_pred H-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 189 R-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 189 r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
| .+|++++.+|++ ++||||+++|+--..
T Consensus 161 Rv~LA~aL~~~pDl--LLLDEPTNHLD~~~i 189 (530)
T COG0488 161 RVALARALLEEPDL--LLLDEPTNHLDLESI 189 (530)
T ss_pred HHHHHHHHhcCCCE--EEEcCCCcccCHHHH
Confidence 8 899999999999 999999999976543
No 358
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.46 E-value=1.6e-13 Score=119.18 Aligned_cols=127 Identities=17% Similarity=0.160 Sum_probs=83.7
Q ss_pred eecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------------ccCCCCCcccH
Q 023675 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-------------NRDLSFKAEDR 156 (279)
Q Consensus 90 ~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-------------~~~~~~~~~~~ 156 (279)
.+..+.||++++|++++++|+||+||||++|+|.|++ .|.+|.|.++|.+-.... ....-++....
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc-ccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhh
Confidence 3445669999999999999999999999999999999 899999999997653210 00000000000
Q ss_pred --------------HHHHHHHHHHHHHHHhCC-cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675 157 --------------VENIRRIGEVAKLFADAG-VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 157 --------------~~~~~~v~~~~~~~~~~~-~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
..+.+++..+..++.-.+ +..-+..+|.+++.| +++.++++.|++ ++||||+=.|+--.+.
T Consensus 117 ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~V--LfLDEpTvgLDV~aq~ 193 (325)
T COG4586 117 DSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKV--LFLDEPTVGLDVNAQA 193 (325)
T ss_pred hhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcE--EEecCCccCcchhHHH
Confidence 111122222222221111 222344578888888 889999999988 9999997777654443
No 359
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.46 E-value=3.2e-13 Score=143.35 Aligned_cols=140 Identities=14% Similarity=0.251 Sum_probs=96.1
Q ss_pred eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCeecccccccCCC
Q 023675 82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRHGLNRDLS 150 (279)
Q Consensus 82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~i~~~~~~~~~ 150 (279)
++|+|++++|. ++.|+.+++|++++|+|+||||||||+++|+|++.. +.+|.|.+||.++...+...++
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~ 839 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG 839 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee
Confidence 68999888774 233899999999999999999999999999999831 6789999999887432222222
Q ss_pred CCccc--------HHHHHHH---------------HHHHHHHHHhCCcch----hcc----cCChHHHHH-HHHHHhCCC
Q 023675 151 FKAED--------RVENIRR---------------IGEVAKLFADAGVIC----IAC----LISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 151 ~~~~~--------~~~~~~~---------------v~~~~~~~~~~~~~~----i~~----~~~~~~~~r-~~ar~l~~~ 198 (279)
|.+++ .++.+.. ...+..++...++.. .+. .+++++++| .++++++.+
T Consensus 840 yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~ 919 (1394)
T TIGR00956 840 YVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAK 919 (1394)
T ss_pred eecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcC
Confidence 22221 1111110 011112222223221 122 588899998 999999999
Q ss_pred CC-ccEEEEeCCccchhccChhhHHH
Q 023675 199 GD-FIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 199 ~~-~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
|+ + ++||||++.++......+.+
T Consensus 920 P~~i--LlLDEPTsgLD~~~~~~i~~ 943 (1394)
T TIGR00956 920 PKLL--LFLDEPTSGLDSQTAWSICK 943 (1394)
T ss_pred CCeE--EEEcCCCCCCCHHHHHHHHH
Confidence 96 7 99999999999987766544
No 360
>PLN03073 ABC transporter F family; Provisional
Probab=99.46 E-value=9.3e-13 Score=131.47 Aligned_cols=143 Identities=15% Similarity=0.087 Sum_probs=97.6
Q ss_pred CCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccC--CC
Q 023675 80 TNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRD--LS 150 (279)
Q Consensus 80 ~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~--~~ 150 (279)
..++++++++.|.. +.||++.+|++++|+|+||||||||+++|+|.+ .|.+|.|++++.. +. .+... ..
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll-~p~~G~I~~~~~~~ig-yv~Q~~~~~ 584 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL-QPSSGTVFRSAKVRMA-VFSQHHVDG 584 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCceEEECCceeEE-EEecccccc
Confidence 35899999999953 238999999999999999999999999999999 8999999987632 10 00000 00
Q ss_pred CCccc--HHHHHHH-----HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675 151 FKAED--RVENIRR-----IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (279)
Q Consensus 151 ~~~~~--~~~~~~~-----v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~ 217 (279)
+.... ....... -..+...+...++. ..+..+|+++++| .++++++.+|++ ++||||+..++...
T Consensus 585 l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~l--LLLDEPT~~LD~~s 662 (718)
T PLN03073 585 LDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHI--LLLDEPSNHLDLDA 662 (718)
T ss_pred CCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCE--EEEcCCCCCCCHHH
Confidence 00000 0000000 01122233333432 1345689999999 899999999998 99999999999987
Q ss_pred hhhHHHHHh
Q 023675 218 PKGLYKLAR 226 (279)
Q Consensus 218 ~~~l~~~~~ 226 (279)
...+.+.+.
T Consensus 663 ~~~l~~~L~ 671 (718)
T PLN03073 663 VEALIQGLV 671 (718)
T ss_pred HHHHHHHHH
Confidence 766665544
No 361
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.45 E-value=8.7e-14 Score=121.28 Aligned_cols=122 Identities=18% Similarity=0.248 Sum_probs=86.7
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---c-----ccCCCCCcccHH---------
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---L-----NRDLSFKAEDRV--------- 157 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~-----~~~~~~~~~~~~--------- 157 (279)
++|..+...+.+|.|+|||||||+.|+++|+. .|+.|.|.++|+.+.+. + ...++|.+++-+
T Consensus 17 a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~-rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 17 ANFTLPARGITALFGPSGSGKTSLINMIAGLT-RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EeccCCCCceEEEecCCCCChhhHHHHHhccC-CccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 46777776899999999999999999999999 99999999999877432 1 123444444321
Q ss_pred -----HH---HHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 158 -----EN---IRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 158 -----~~---~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
.+ .....++..++ |+-. ....+|++++|| ++.|+++..|++ +++|||++.++.--++.++
T Consensus 96 NL~YG~~~~~~~~fd~iv~lL---GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~L--LLmDEPLaSLD~~RK~Eil 168 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALL---GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPEL--LLMDEPLASLDLPRKREIL 168 (352)
T ss_pred chhhhhcccchHhHHHHHHHh---CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCe--eeecCchhhcccchhhHHH
Confidence 00 01112222221 2222 334588999999 999999999998 9999999999876665543
No 362
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.44 E-value=4.6e-13 Score=144.32 Aligned_cols=142 Identities=17% Similarity=0.193 Sum_probs=101.7
Q ss_pred CCeEEeecceeec-------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc---ccCC
Q 023675 80 TNILWHKNSVDKR-------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---NRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~-------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~---~~~~ 149 (279)
..+++++++..|. ++.||.+.+|++++|+|+||||||||+++|+|++ .|++|.|+++|.++.... ...+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-PPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-CCCceEEEECCEECcchHHHHhhcE
Confidence 4688999988884 2339999999999999999999999999999999 899999999998874211 1122
Q ss_pred CCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 150 SFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 150 ~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
++.++. ..+.+.. -.++...+...++.. ....+|+|+++| .++++++.+|++ +
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkV--L 1083 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKV--V 1083 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence 222221 1111110 011222333334322 345688999998 999999999998 9
Q ss_pred EEeCCccchhccChhhHHHH
Q 023675 205 FMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~ 224 (279)
+||||++.++....+.+.+.
T Consensus 1084 LLDEPTSGLDp~sr~~l~~l 1103 (2272)
T TIGR01257 1084 VLDEPTSGVDPYSRRSIWDL 1103 (2272)
T ss_pred EEECCCcCCCHHHHHHHHHH
Confidence 99999999999887765543
No 363
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.43 E-value=9e-13 Score=108.72 Aligned_cols=148 Identities=20% Similarity=0.265 Sum_probs=91.0
Q ss_pred EcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccCCCCCcccHHHHHHHHHHHHHHHH-hCCcchhccc
Q 023675 108 TGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRDLSFKAEDRVENIRRIGEVAKLFA-DAGVICIACL 181 (279)
Q Consensus 108 vG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~i~~~ 181 (279)
+|+|||||||+++.|++.+. .+++|+|.+.. .....+.+....+..+...+...+.... ..+..+++ +
T Consensus 1 ~G~sGsGKSTla~~la~~l~-----~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~ 74 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH-----AAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-C 74 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC-----CeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-E
Confidence 59999999999999999983 56999987521 1112234444444455555555444333 22332333 4
Q ss_pred CChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC---CCccccCcCCCCCCC--ce-EEEccCC
Q 023675 182 ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK---GFTGIDDPYEPPLNC--EI-VLKQMGD 255 (279)
Q Consensus 182 ~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~---~~~~~r~~~~~~~~a--~~-~i~~~~~ 255 (279)
.......|+.++. ..++|..+++++|.+.+.+|+..+ .++.. .+..+...+++|... ++ +++
T Consensus 75 s~~~~~~r~~~~~--~~~~~~~v~l~a~~~~l~~Rl~~R------~~~~a~~~vl~~Q~~~~ep~~~~e~~~~~id---- 142 (163)
T PRK11545 75 SALKKHYRDLLRE--GNPNLSFIYLKGDFDVIESRLKAR------KGHFFKTQMLVTQFETLQEPGADETDVLVVD---- 142 (163)
T ss_pred ecchHHHHHHHHc--cCCCEEEEEEECCHHHHHHHHHhc------cCCCCCHHHHHHHHHHcCCCCCCCCCEEEEe----
Confidence 4455666777776 334677799999999999998543 33321 112223335555432 23 344
Q ss_pred CCCCHHHHHHHHHHHHHh
Q 023675 256 DCPSPADMVETVVSYLDE 273 (279)
Q Consensus 256 ~~~~~~e~~~~Il~~l~~ 273 (279)
...++++++.+++.++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~ 160 (163)
T PRK11545 143 IDQPLEGVVASTIEVIKK 160 (163)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 456889999999998865
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.43 E-value=1.1e-12 Score=112.70 Aligned_cols=130 Identities=20% Similarity=0.097 Sum_probs=86.4
Q ss_pred ecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-----------
Q 023675 86 KNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE----------- 154 (279)
Q Consensus 86 ~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~----------- 154 (279)
...+....+.||++.+|+.++|+|+||||||||+++|+|.+ .|++|.|.++|+... .+....+|.++
T Consensus 37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt~G~v~v~G~v~~-li~lg~Gf~pelTGreNi~l~~ 114 (249)
T COG1134 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPTSGKVKVTGKVAP-LIELGAGFDPELTGRENIYLRG 114 (249)
T ss_pred cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCCCceEEEcceEeh-hhhcccCCCcccchHHHHHHHH
Confidence 33556677889999999999999999999999999999999 999999999998541 11122233333
Q ss_pred --------cHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 155 --------DRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 155 --------~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
+..+.+..+.+.+.+ .+.-...+-.+.++...+...+-+...+|++ +++||-++.-+....+.
T Consensus 115 ~~~G~~~~ei~~~~~eIieFaEL-G~fi~~PvktYSSGM~aRLaFsia~~~~pdI--LllDEvlavGD~~F~~K 185 (249)
T COG1134 115 LILGLTRKEIDEKVDEIIEFAEL-GDFIDQPVKTYSSGMYARLAFSVATHVEPDI--LLLDEVLAVGDAAFQEK 185 (249)
T ss_pred HHhCccHHHHHHHHHHHHHHHHH-HHHhhCchhhccHHHHHHHHHhhhhhcCCCE--EEEehhhhcCCHHHHHH
Confidence 222222222222211 1111122334555555444777777778888 99999988888776554
No 365
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.43 E-value=5.1e-13 Score=144.00 Aligned_cols=142 Identities=14% Similarity=0.140 Sum_probs=101.7
Q ss_pred CCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCC
Q 023675 80 TNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~ 149 (279)
..+++++++..|.. +.||.+++|++++|+|+||||||||+++|+|.+ .|++|.|+++|.++... ....+
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll-~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT-TVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECcchHHHHhhhE
Confidence 45889999888864 238999999999999999999999999999999 89999999999887421 11123
Q ss_pred CCCccc--------HHHHHH---H--------HHH-HHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 150 SFKAED--------RVENIR---R--------IGE-VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 150 ~~~~~~--------~~~~~~---~--------v~~-~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
+|.++. .++.+. . ..+ +..++...++.. .+..+|+|+++| .++++++.+|++ +
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~V--L 2092 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPL--V 2092 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 332221 111111 0 011 112233334322 245688899888 899999999998 9
Q ss_pred EEeCCccchhccChhhHHHH
Q 023675 205 FMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~ 224 (279)
+||||+..++...++.+++.
T Consensus 2093 LLDEPTsGLDp~sr~~l~~l 2112 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNT 2112 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHH
Confidence 99999999999888775553
No 366
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.42 E-value=1.7e-12 Score=108.37 Aligned_cols=153 Identities=20% Similarity=0.300 Sum_probs=96.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHHHH---h
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFA---D 172 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~---~ 172 (279)
+|++++|+|+|||||||+++.|++++. + ++++|+++... +...+.+..+.+..+...+...+..+. .
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNE 76 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCC
Confidence 589999999999999999999999983 3 48999987432 122345555554455555544443331 2
Q ss_pred CCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC---CCccccCcCCCCC--CCc
Q 023675 173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK---GFTGIDDPYEPPL--NCE 247 (279)
Q Consensus 173 ~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~---~~~~~r~~~~~~~--~a~ 247 (279)
.+.++ +.......|+.++.... +|..+||++|.+.+.+|+.++ .++.. .+..+...+++|. +.+
T Consensus 77 ~g~iv---~s~~~~~~R~~~r~~~~--~~~~v~l~a~~~~l~~Rl~~R------~~~~~~~~vl~~Q~~~~e~~~~~e~~ 145 (176)
T PRK09825 77 TGFIV---CSSLKKQYRDILRKSSP--NVHFLWLDGDYETILARMQRR------AGHFMPPDLLQSQFDALERPCADEHD 145 (176)
T ss_pred CEEEE---EEecCHHHHHHHHhhCC--CEEEEEEeCCHHHHHHHHhcc------cCCCCCHHHHHHHHHHcCCCCCCcCC
Confidence 33322 33444566777766543 467799999999999998554 22221 1122233233332 122
Q ss_pred -eEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 248 -IVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 248 -~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
+++|+ ..++++.+.++...+..
T Consensus 146 ~~~~d~----~~~~~~~~~~~~~~~~~ 168 (176)
T PRK09825 146 IARIDV----NHDIENVTEQCRQAVQA 168 (176)
T ss_pred eEEEEC----CCCHHHHHHHHHHHHHH
Confidence 45554 56788899999888875
No 367
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.42 E-value=6.9e-13 Score=142.15 Aligned_cols=142 Identities=19% Similarity=0.246 Sum_probs=99.6
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec--cc--cc----
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH--GL---- 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i--~~--~~---- 145 (279)
.+++++++|+|.. +.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.-- .+ .+
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-~~~~G~i~~~g~i~yv~Q~~~l~~~T 714 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVHMKGSVAYVPQQAWIQNDS 714 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-ccCCcEEEECCEEEEEcCCccccCCc
Confidence 6999999999964 238999999999999999999999999999999 89999999998421 00 11
Q ss_pred -ccCCCCCcccHHHHHHHHHHHHHHHHh-----CCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675 146 -NRDLSFKAEDRVENIRRIGEVAKLFAD-----AGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (279)
Q Consensus 146 -~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~ 214 (279)
...+.+...-..+.+..+.+.+.+..+ .|. ...+..+++|+++| .+||++..++++ ++||+|++.++
T Consensus 715 i~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~i--llLDEp~saLD 792 (1522)
T TIGR00957 715 LRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSAVD 792 (1522)
T ss_pred HHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCCccccC
Confidence 111111110001222222222221111 121 22345689999999 999999999998 99999999999
Q ss_pred ccChhhHHHHH
Q 023675 215 ARDPKGLYKLA 225 (279)
Q Consensus 215 ~R~~~~l~~~~ 225 (279)
....+.+++..
T Consensus 793 ~~~~~~i~~~l 803 (1522)
T TIGR00957 793 AHVGKHIFEHV 803 (1522)
T ss_pred HHHHHHHHHHH
Confidence 98887776554
No 368
>PRK13409 putative ATPase RIL; Provisional
Probab=99.41 E-value=1e-12 Score=128.80 Aligned_cols=130 Identities=22% Similarity=0.275 Sum_probs=88.2
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE-----------EcCeeccccc------ccCCCCCcc-
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-----------LDGDNCRHGL------NRDLSFKAE- 154 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~-----------ldgd~i~~~~------~~~~~~~~~- 154 (279)
.+.+ .+.+|++++|+|+||||||||+++|+|.+ .|+.|.|. ++|.++.... ...+.+..+
T Consensus 91 ~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l-~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~ 168 (590)
T PRK13409 91 YGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL-IPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQY 168 (590)
T ss_pred ecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccc
Confidence 3446 78999999999999999999999999999 89999997 8887763210 000111111
Q ss_pred ----------cHHHHHHH---HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 155 ----------DRVENIRR---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 155 ----------~~~~~~~~---v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
...+.+.. ...+..++...++.. .+..+|+++++| .++++++.+|++ ++||||++.|+..
T Consensus 169 ~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~l--llLDEPts~LD~~ 246 (590)
T PRK13409 169 VDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADF--YFFDEPTSYLDIR 246 (590)
T ss_pred hhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHH
Confidence 00111110 011222333333322 344688999999 999999999998 9999999999998
Q ss_pred ChhhHHHHHh
Q 023675 217 DPKGLYKLAR 226 (279)
Q Consensus 217 ~~~~l~~~~~ 226 (279)
....+++.++
T Consensus 247 ~~~~l~~~i~ 256 (590)
T PRK13409 247 QRLNVARLIR 256 (590)
T ss_pred HHHHHHHHHH
Confidence 8777665433
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.41 E-value=3.8e-13 Score=139.47 Aligned_cols=147 Identities=19% Similarity=0.211 Sum_probs=104.5
Q ss_pred cCCCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675 77 AKSTNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L 145 (279)
Q Consensus 77 ~~~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~ 145 (279)
|..|.|+|+|++++|..+ .||.+++||.|+|||..|||||||+++|-|+. .|.+|.|.|||.|+.+. +
T Consensus 1134 P~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-EPAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred CCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-CccCCeEEEcCeecccccHHHH
Confidence 456899999999999754 39999999999999999999999999999999 88999999999998531 1
Q ss_pred ccCC----------------------CCCcccHHHHHHHH--HHHHHHHH---hCCcchhcccCChHHHHH-HHHHHhCC
Q 023675 146 NRDL----------------------SFKAEDRVENIRRI--GEVAKLFA---DAGVICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 146 ~~~~----------------------~~~~~~~~~~~~~v--~~~~~~~~---~~~~~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
+..+ .+++++..+.++.. .....-+. +..+...+...+.||+|. .++|++++
T Consensus 1213 RsrlsIIPQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr 1292 (1381)
T KOG0054|consen 1213 RSRLSIIPQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLR 1292 (1381)
T ss_pred HhcCeeeCCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhc
Confidence 1111 12333333333221 11111110 112233455678888887 89999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+.++ +.|||.++.++..--.-+.+.++
T Consensus 1293 ~skI--LvLDEATAsVD~~TD~lIQ~tIR 1319 (1381)
T KOG0054|consen 1293 KSKI--LVLDEATASVDPETDALIQKTIR 1319 (1381)
T ss_pred cCCE--EEEecccccCChHHHHHHHHHHH
Confidence 9988 99999999998876443434344
No 370
>PRK13948 shikimate kinase; Provisional
Probab=99.41 E-value=1e-13 Score=116.19 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=95.9
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc---CCCCCcccHHHHHHHHHHHHHHHHh--CC
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR---DLSFKAEDRVENIRRIGEVAKLFAD--AG 174 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~--~~ 174 (279)
+++..|+|+|++||||||+++.|+..+..+ ++|.|.+.+...+ ...|.......+++...++...+.. ..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~-----~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~~~ 82 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLH-----FIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLDYA 82 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCe
Confidence 356899999999999999999999998655 8898866432210 0001111111222222222222222 22
Q ss_pred cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh---HHHH-HhCCCCCCCccccCcCCCCCCCceEE
Q 023675 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG---LYKL-AREGKVKGFTGIDDPYEPPLNCEIVL 250 (279)
Q Consensus 175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~---l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i 250 (279)
+++.+++......++..++. . ...|||+.|.+.+.+|+... ++.. ....++..++..|.++|.. ++++|
T Consensus 83 VIa~GgG~v~~~~n~~~l~~---~--g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l~~~R~~~Y~~--a~~~i 155 (182)
T PRK13948 83 VISLGGGTFMHEENRRKLLS---R--GPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTLLNEREPVYRQ--ATIHV 155 (182)
T ss_pred EEECCCcEEcCHHHHHHHHc---C--CeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHHHHHHHHHHHh--CCEEE
Confidence 33333333344455554443 2 23489999999999987422 1110 0011233455667888854 88999
Q ss_pred EccCCCCCCHHHHHHHHHHHHHh
Q 023675 251 KQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 251 ~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
++ +..++++++++|+..|..
T Consensus 156 ~t---~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 156 ST---DGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred EC---CCCCHHHHHHHHHHHHHH
Confidence 99 889999999999998876
No 371
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.40 E-value=2.9e-12 Score=105.28 Aligned_cols=150 Identities=19% Similarity=0.281 Sum_probs=90.2
Q ss_pred EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhc
Q 023675 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA 179 (279)
Q Consensus 105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~ 179 (279)
++|+|++||||||+++.|++.+. .+++++|++... ......+..+....++..+.+.+..+...+..+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~-----~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi 75 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG-----AKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGII 75 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC-----CeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 47899999999999999999983 558999997422 11223444455555655555544444444443455
Q ss_pred ccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC---CCccccCcCCCCC--CCc-eEEEcc
Q 023675 180 CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK---GFTGIDDPYEPPL--NCE-IVLKQM 253 (279)
Q Consensus 180 ~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~---~~~~~r~~~~~~~--~a~-~~i~~~ 253 (279)
.........|+.++.. .+.+..++++.|.+.+.+|+..+ .++.. .+......++.|. +++ .+||
T Consensus 76 ~~t~~~~~~r~~~~~~--~~~~~~i~l~~~~e~~~~R~~~R------~~~~~~~~~i~~~~~~~~~~~~~e~~~~~id-- 145 (163)
T TIGR01313 76 TCSALKRHYRDILREA--EPNLHFIYLSGDKDVILERMKAR------KGHFMKADMLESQFAALEEPLADETDVLRVD-- 145 (163)
T ss_pred EecccHHHHHHHHHhc--CCCEEEEEEeCCHHHHHHHHHhc------cCCCCCHHHHHHHHHHhCCCCCCCCceEEEE--
Confidence 5555555666666532 34566699999999999998543 22111 1111111122221 123 4454
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 023675 254 GDDCPSPADMVETVVSYL 271 (279)
Q Consensus 254 ~~~~~~~~e~~~~Il~~l 271 (279)
+..+++++.++|.+.|
T Consensus 146 --~~~~~~~~~~~~~~~~ 161 (163)
T TIGR01313 146 --IDQPLEGVEEDCIAVV 161 (163)
T ss_pred --CCCCHHHHHHHHHHHH
Confidence 4567889999988776
No 372
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.40 E-value=1.1e-12 Score=106.91 Aligned_cols=134 Identities=19% Similarity=0.196 Sum_probs=84.9
Q ss_pred ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-ccccccCCCCCcccHHHHHHHHHH----
Q 023675 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGLNRDLSFKAEDRVENIRRIGE---- 165 (279)
Q Consensus 91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~~~~~~~~~~~~~~~~~~~~~v~~---- 165 (279)
..++.||+++.||.++|-|+|||||||+++.|-+-| .|++|.|++.-..- -+....+..-..+-++..+.++.|
T Consensus 26 V~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRv 104 (235)
T COG4778 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRV 104 (235)
T ss_pred eeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHh
Confidence 345679999999999999999999999999999999 99999999874321 110000000000001111111111
Q ss_pred ---------------------------HHHHHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 166 ---------------------------VAKLFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 166 ---------------------------~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
...++....+-. -.+..+++++|| .++|..+-+.++ ++||||++.
T Consensus 105 iPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pI--LLLDEPTas 182 (235)
T COG4778 105 IPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPI--LLLDEPTAS 182 (235)
T ss_pred ccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCce--EEecCCccc
Confidence 111222211111 122356778888 999999998777 999999999
Q ss_pred hhccChhhHHHHHhC
Q 023675 213 CEARDPKGLYKLARE 227 (279)
Q Consensus 213 l~~R~~~~l~~~~~~ 227 (279)
++....+-..+.+.+
T Consensus 183 LDa~Nr~vVveli~e 197 (235)
T COG4778 183 LDATNRAVVVELIRE 197 (235)
T ss_pred ccccchHHHHHHHHH
Confidence 999887765544443
No 373
>PLN03073 ABC transporter F family; Provisional
Probab=99.40 E-value=3.2e-12 Score=127.66 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=95.7
Q ss_pred CCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcc--ccCCccEEEEcCeecc-ccc-----
Q 023675 79 STNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQAL--HWRGKLTYILDGDNCR-HGL----- 145 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l--~~~~~G~i~ldgd~i~-~~~----- 145 (279)
...|++++++++|..+ .||++.+|+.++|+|+||||||||+++|++.. ..|..|.|.+....+. ...
T Consensus 175 ~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 175 IKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred ceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 3569999999999643 39999999999999999999999999999864 2567888865433221 000
Q ss_pred ------------ccCCCCCcc---------------------cHHHHHHHHHHHH----------------HHHHhCCcc
Q 023675 146 ------------NRDLSFKAE---------------------DRVENIRRIGEVA----------------KLFADAGVI 176 (279)
Q Consensus 146 ------------~~~~~~~~~---------------------~~~~~~~~v~~~~----------------~~~~~~~~~ 176 (279)
....++..+ .......++.++. .++...|+.
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~ 334 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFT 334 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCC
Confidence 000000000 0000011111111 112222321
Q ss_pred -----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 177 -----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 177 -----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
.....+|+++++| .++++++.+|++ ++||||+..|+......+.+.++.
T Consensus 335 ~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~l--LlLDEPt~~LD~~~~~~l~~~L~~ 389 (718)
T PLN03073 335 PEMQVKATKTFSGGWRMRIALARALFIEPDL--LLLDEPTNHLDLHAVLWLETYLLK 389 (718)
T ss_pred hHHHhCchhhCCHHHHHHHHHHHHHhcCCCE--EEEECCCCCCCHHHHHHHHHHHHH
Confidence 1234688899998 999999999998 999999999999887777665553
No 374
>PRK06762 hypothetical protein; Provisional
Probab=99.39 E-value=4.5e-13 Score=110.44 Aligned_cols=159 Identities=18% Similarity=0.161 Sum_probs=95.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL 181 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~ 181 (279)
+.+++|+|++||||||+++.|+..+ . .+.+++++|.+++.+......... .....+.+........+..++.+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l-~--~~~~~i~~D~~r~~l~~~~~~~~~---~~~~~~~~~~~~~~~~g~~vild~ 75 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL-G--RGTLLVSQDVVRRDMLRVKDGPGN---LSIDLIEQLVRYGLGHCEFVILEG 75 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh-C--CCeEEecHHHHHHHhccccCCCCC---cCHHHHHHHHHHHHhCCCEEEEch
Confidence 5789999999999999999999988 2 267788999887544321111110 111122223333334565555554
Q ss_pred CChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhhHHHH-HhCCCCCCCccccCcCCCCCCCceEEEccCCCCC
Q 023675 182 ISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKL-AREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCP 258 (279)
Q Consensus 182 ~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~ 258 (279)
.......++..+.+... .++..++++.|.+.+.+|..++-... .....+..++..+..++. ++.++++ ++.
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~---~~~ 149 (166)
T PRK06762 76 ILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPKSHEFGEDDMRRWWNPHDTLGV---IGETIFT---DNL 149 (166)
T ss_pred hhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccccccCCHHHHHHHHhhcCCcCC---CCeEEec---CCC
Confidence 43333334444444332 24667999999999999986542100 011112222333333332 4568888 789
Q ss_pred CHHHHHHHHHHHHH
Q 023675 259 SPADMVETVVSYLD 272 (279)
Q Consensus 259 ~~~e~~~~Il~~l~ 272 (279)
++++++++|+..+.
T Consensus 150 ~~~~v~~~i~~~~~ 163 (166)
T PRK06762 150 SLKDIFDAILTDIG 163 (166)
T ss_pred CHHHHHHHHHHHhc
Confidence 99999999998875
No 375
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.39 E-value=3.6e-12 Score=103.14 Aligned_cols=142 Identities=16% Similarity=0.181 Sum_probs=91.8
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----------ccc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----------GLN 146 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----------~~~ 146 (279)
|.+++..+.|.. +.+|..+.|++++|.||||+|||||++.|.-+- -|.+|+..+.+....- .++
T Consensus 3 irv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle-~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred eEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHh-CCCCCeEEecccccccccCccHHHHHHHH
Confidence 455566666664 348889999999999999999999999887655 8999999998865421 112
Q ss_pred cCCCCCcccHH--HHHHH-------------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675 147 RDLSFKAEDRV--ENIRR-------------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 147 ~~~~~~~~~~~--~~~~~-------------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
.+.++.++... ..+.. ..+...++....+.. ..-.+++++++| +++|+++-+|+
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 22333222110 00000 011111111111111 122467888888 99999999998
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ +++|+|+..+++.+...+...++
T Consensus 162 v--llfdeptaaldpeitaqvv~iik 185 (242)
T COG4161 162 V--LLFDEPTAALDPEITAQIVSIIK 185 (242)
T ss_pred E--EeecCcccccCHHHHHHHHHHHH
Confidence 8 99999999999988776554443
No 376
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.38 E-value=1.6e-12 Score=128.36 Aligned_cols=130 Identities=18% Similarity=0.234 Sum_probs=88.2
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeeccc-ccccCCCCCccc--------HHHHH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRH-GLNRDLSFKAED--------RVENI 160 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~-~~~~~~~~~~~~--------~~~~~ 160 (279)
++.|+.+++|++++|+|+||||||||+++|+|.. .++ +|.|.++|.++.. .....++|.+++ .++.+
T Consensus 42 ~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~-~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l 120 (617)
T TIGR00955 42 KNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRS-PKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHL 120 (617)
T ss_pred cCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcHHHHH
Confidence 4558999999999999999999999999999998 554 7999999987631 111111221111 01100
Q ss_pred ---------------HHHHHHHHHHHhCCcc-----hhc-----ccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675 161 ---------------RRIGEVAKLFADAGVI-----CIA-----CLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (279)
Q Consensus 161 ---------------~~v~~~~~~~~~~~~~-----~i~-----~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~ 214 (279)
.....+..++...++. .++ ..+++++++| .++++++.+|++ +++|||+..++
T Consensus 121 ~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v--lllDEPtsgLD 198 (617)
T TIGR00955 121 MFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL--LFCDEPTSGLD 198 (617)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE--EEeeCCCcchh
Confidence 0111122233332321 122 2588899988 999999999988 99999999999
Q ss_pred ccChhhHHHHH
Q 023675 215 ARDPKGLYKLA 225 (279)
Q Consensus 215 ~R~~~~l~~~~ 225 (279)
......+.+.+
T Consensus 199 ~~~~~~l~~~L 209 (617)
T TIGR00955 199 SFMAYSVVQVL 209 (617)
T ss_pred HHHHHHHHHHH
Confidence 99887755443
No 377
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.36 E-value=3.4e-13 Score=112.04 Aligned_cols=146 Identities=16% Similarity=0.184 Sum_probs=95.5
Q ss_pred CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eeccccc-----ccCCCCCc
Q 023675 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGL-----NRDLSFKA 153 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~~~~-----~~~~~~~~ 153 (279)
.++++.+..|.+.+..||++.+|+.-+|+||||+||||++..|.|.- .|+.|+++++| .++...- ...++-.+
T Consensus 9 ~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt-rp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKF 87 (249)
T COG4674 9 DGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT-RPQEGEVLFDGDTDLTKLPEHRIARAGIGRKF 87 (249)
T ss_pred eceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC-CCCcceEEEcCchhhccCCHHHHHHhccCccc
Confidence 35666667778888889999999999999999999999999999999 89999999999 5664211 01111111
Q ss_pred c--------cHHHHHH--------------------HHHHHHHHHHhCCc----chhcccCChHHHHH-HHHHHhCCCCC
Q 023675 154 E--------DRVENIR--------------------RIGEVAKLFADAGV----ICIACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 154 ~--------~~~~~~~--------------------~v~~~~~~~~~~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
+ ..++++. .-.++-.++.-.++ ....+.++.+++|+ ++..-++.+|+
T Consensus 88 Q~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~ 167 (249)
T COG4674 88 QKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPK 167 (249)
T ss_pred cCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCc
Confidence 1 0000000 00011112222222 12345678888888 88888889998
Q ss_pred ccEEEEeCCccchhccChhh---HHHHHhCC
Q 023675 201 FIEVFMDVPLQVCEARDPKG---LYKLAREG 228 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~---l~~~~~~~ 228 (279)
+ +++|||.+...+..... |+..+...
T Consensus 168 l--LLlDEPvAGMTd~Et~~taeLl~~la~~ 196 (249)
T COG4674 168 L--LLLDEPVAGMTDAETEKTAELLKSLAGK 196 (249)
T ss_pred E--EEecCccCCCcHHHHHHHHHHHHHHhcC
Confidence 8 99999998877655433 44444433
No 378
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.36 E-value=1.8e-12 Score=138.65 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=87.9
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc----cccc-----cCCCCCcccHHHHHHHH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HGLN-----RDLSFKAEDRVENIRRI 163 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~----~~~~-----~~~~~~~~~~~~~~~~v 163 (279)
.+.+|++++|++++|+|+||||||||+++|+|.+ .|.+|.|.++|.--. .++. ..+.+...-....+..+
T Consensus 443 ~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~-~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~~~~ 521 (1490)
T TIGR01271 443 KNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRYTSV 521 (1490)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHHHHH
Confidence 3558999999999999999999999999999999 899999999984210 0110 01111110001112222
Q ss_pred HHHHHHHHh-----CCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 164 GEVAKLFAD-----AGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 164 ~~~~~~~~~-----~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
...+.+..+ .+. ...+..+++|+++| .++|+++.++++ ++||+|++.++....+.+++.
T Consensus 522 ~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~i--llLDep~saLD~~~~~~i~~~ 590 (1490)
T TIGR01271 522 IKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFTHLDVVTEKEIFES 590 (1490)
T ss_pred HHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence 222211111 111 12345689999999 999999999998 999999999999988877753
No 379
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.34 E-value=4e-13 Score=111.75 Aligned_cols=158 Identities=18% Similarity=0.278 Sum_probs=88.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc-CCC--CCcccHHHHHHHHHHHHHHHHhCCcchh
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-DLS--FKAEDRVENIRRIGEVAKLFADAGVICI 178 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~~i 178 (279)
...|+|+|++||||||+++.|++.+..+ ++|.|........ .+. +.......++..-.+....+...+..++
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~-----~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi 78 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNME-----FYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVL 78 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCc-----EEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEE
Confidence 4579999999999999999999988544 7888764322111 111 1111111111111111111222222222
Q ss_pred c--ccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh----HHHH-HhCCCCCCCccccCcCCCCCCCceEEE
Q 023675 179 A--CLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG----LYKL-AREGKVKGFTGIDDPYEPPLNCEIVLK 251 (279)
Q Consensus 179 ~--~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~----l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i~ 251 (279)
. .+.......+...+ ...+ .|||+.|.+.+.+|...+ ++.. .....+..+...|.++|... ++++|+
T Consensus 79 ~~ggg~v~~~~~~~~l~----~~~~-vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~~R~~~Y~~~-Ad~~id 152 (172)
T PRK05057 79 ATGGGSVKSRETRNRLS----ARGV-VVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALANERNPLYEEI-ADVTIR 152 (172)
T ss_pred EcCCchhCCHHHHHHHH----hCCE-EEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhh-CCEEEE
Confidence 2 11112223333333 2233 499999999999987432 1100 00001223445577777653 789999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHh
Q 023675 252 QMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 252 ~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
+ +..+++++++.|++.+++
T Consensus 153 t---~~~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 153 T---DDQSAKVVANQIIHMLES 171 (172)
T ss_pred C---CCCCHHHHHHHHHHHHhh
Confidence 9 889999999999998875
No 380
>PLN03140 ABC transporter G family member; Provisional
Probab=99.34 E-value=4.3e-12 Score=134.93 Aligned_cols=141 Identities=16% Similarity=0.149 Sum_probs=94.1
Q ss_pred CeEEeecceeec------------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCee
Q 023675 81 NILWHKNSVDKR------------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDN 140 (279)
Q Consensus 81 ~i~~~~~~~~~~------------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~ 140 (279)
.+.|+|+++... ++.|+.+++|++++|+|+||||||||+++|+|+. . +.+|.|.++|.+
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~-~~g~~~G~I~inG~~ 945 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRK-TGGYIEGDIRISGFP 945 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCC-CCCcccceEEECCcc
Confidence 589999876652 1238999999999999999999999999999987 4 358999999976
Q ss_pred cccc-cccCCCCCccc--------HHHHHH---------------HHHHHHHHHHhCCcch----h-----cccCChHHH
Q 023675 141 CRHG-LNRDLSFKAED--------RVENIR---------------RIGEVAKLFADAGVIC----I-----ACLISPYRK 187 (279)
Q Consensus 141 i~~~-~~~~~~~~~~~--------~~~~~~---------------~v~~~~~~~~~~~~~~----i-----~~~~~~~~~ 187 (279)
.... .....+|.+++ .++.+. ....+..++...++.. . ...++++++
T Consensus 946 ~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGer 1025 (1470)
T PLN03140 946 KKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQR 1025 (1470)
T ss_pred CChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHH
Confidence 5321 11111211111 011110 0001111222222211 1 146889999
Q ss_pred HH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 188 DR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 188 ~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+| .++++++.+|++ ++||||+..|+.+....+.+.
T Consensus 1026 kRvsIa~aL~~~P~l--L~LDEPTsgLD~~~a~~v~~~ 1061 (1470)
T PLN03140 1026 KRLTIAVELVANPSI--IFMDEPTSGLDARAAAIVMRT 1061 (1470)
T ss_pred HHHHHHHHHhhCCCE--EEEeCCCCCCCHHHHHHHHHH
Confidence 99 999999999998 999999999999887765443
No 381
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.32 E-value=6.4e-12 Score=120.93 Aligned_cols=143 Identities=18% Similarity=0.145 Sum_probs=93.8
Q ss_pred CCCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc-CC-C
Q 023675 79 STNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-DL-S 150 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~-~~-~ 150 (279)
..-+++++++++|.++ .||.+++|+.|+|+||||+|||||+++|++.+ .|.+|.|.+... +.-+... .. .
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~-~~~~G~v~~g~~-v~igyf~Q~~~~ 396 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL-GPLSGTVKVGET-VKIGYFDQHRDE 396 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc-ccCCceEEeCCc-eEEEEEEehhhh
Confidence 3458999999999654 39999999999999999999999999999999 777898876543 2211000 00 0
Q ss_pred C-CcccHHHHHHHH------HHHHHHHHhCCc-----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675 151 F-KAEDRVENIRRI------GEVAKLFADAGV-----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (279)
Q Consensus 151 ~-~~~~~~~~~~~v------~~~~~~~~~~~~-----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~ 217 (279)
+ .......++... ..+-..+..+++ ...+..+|+|++.| .+++-++..|.+ ++||||+++|+--.
T Consensus 397 l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNv--LiLDEPTNhLDi~s 474 (530)
T COG0488 397 LDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNL--LLLDEPTNHLDIES 474 (530)
T ss_pred cCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCE--EEEcCCCccCCHHH
Confidence 0 111111111110 112222223332 22455689999999 777888888888 99999999997765
Q ss_pred hhhHHHHH
Q 023675 218 PKGLYKLA 225 (279)
Q Consensus 218 ~~~l~~~~ 225 (279)
...|-..+
T Consensus 475 ~~aLe~aL 482 (530)
T COG0488 475 LEALEEAL 482 (530)
T ss_pred HHHHHHHH
Confidence 44444333
No 382
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.32 E-value=4.4e-12 Score=115.87 Aligned_cols=116 Identities=18% Similarity=0.181 Sum_probs=77.8
Q ss_pred EEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc--------cHHHHHHH------------HH
Q 023675 107 ITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE--------DRVENIRR------------IG 164 (279)
Q Consensus 107 lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~--------~~~~~~~~------------v~ 164 (279)
|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++|.++ ...+.+.. ..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~ 79 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKP 79 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHH
Confidence 58999999999999999999 89999999999887321 0111121111 11111110 01
Q ss_pred HHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 165 EVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 165 ~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
.+...+...++.. ....+|+++++| .++++++.+|++ ++||||+..++......+++.+
T Consensus 80 ~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~l--llLDEP~s~LD~~~~~~l~~~l 143 (325)
T TIGR01187 80 RVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKI--LLLDEPLSALDKKLRDQMQLEL 143 (325)
T ss_pred HHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCCccCCHHHHHHHHHHH
Confidence 1122233333322 344588999999 999999999998 9999999999998877655443
No 383
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.31 E-value=6.6e-12 Score=114.53 Aligned_cols=140 Identities=17% Similarity=0.195 Sum_probs=94.2
Q ss_pred eEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccC----CccEEEEcCeecccc----
Q 023675 82 ILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR----GKLTYILDGDNCRHG---- 144 (279)
Q Consensus 82 i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~----~~G~i~ldgd~i~~~---- 144 (279)
++++|+++.|. .+.||.+.+||+++|||.||||||-.++.++++|+.+ .+|.|.++|.++-..
T Consensus 7 L~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~ 86 (534)
T COG4172 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQ 86 (534)
T ss_pred eeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHH
Confidence 45555555443 4559999999999999999999999999999999643 368999999987321
Q ss_pred ---cc-cCCCCCcccH--------------HHHHH---------HHHHHHHHHHhCCc-------chhcccCChHHHHH-
Q 023675 145 ---LN-RDLSFKAEDR--------------VENIR---------RIGEVAKLFADAGV-------ICIACLISPYRKDR- 189 (279)
Q Consensus 145 ---~~-~~~~~~~~~~--------------~~~~~---------~v~~~~~~~~~~~~-------~~i~~~~~~~~~~r- 189 (279)
++ ..+++.+++. .+.++ .-.....++..-|+ ..+...+|+++++|
T Consensus 87 lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRV 166 (534)
T COG4172 87 LRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRV 166 (534)
T ss_pred HhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHH
Confidence 11 1222222211 00000 00112223333333 23555689999999
Q ss_pred HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 190 DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 190 ~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
-++.+++.+|++ ++-|||+..++--.+..+++
T Consensus 167 MIAMALan~P~l--LIADEPTTALDVtvQaQIL~ 198 (534)
T COG4172 167 MIAMALANEPDL--LIADEPTTALDVTVQAQILD 198 (534)
T ss_pred HHHHHHcCCCCe--EeecCCcchhhhhhHHHHHH
Confidence 889999999998 99999999998877766444
No 384
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.30 E-value=1.4e-11 Score=121.20 Aligned_cols=136 Identities=20% Similarity=0.272 Sum_probs=91.7
Q ss_pred CCeEEeecceeecC----------CcceeccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCeeccc-ccc
Q 023675 80 TNILWHKNSVDKRD----------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNCRH-GLN 146 (279)
Q Consensus 80 ~~i~~~~~~~~~~~----------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~i~~-~~~ 146 (279)
..+.|++..++... +.+...++|++.||+||||||||||+++|+++... ..+|.|.+||..... ...
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 34667776555533 34889999999999999999999999999999853 468999999954421 111
Q ss_pred cCCCCCcc--------------------------cHHHHHHHHHHHHHHHHhCCcch-----hc----ccCChHHHHH-H
Q 023675 147 RDLSFKAE--------------------------DRVENIRRIGEVAKLFADAGVIC-----IA----CLISPYRKDR-D 190 (279)
Q Consensus 147 ~~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~~~~~~-----i~----~~~~~~~~~r-~ 190 (279)
.-.+|..+ ...+...++.++. .+.++.. ++ .+.+++++.| .
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi---~~LgL~~~~~t~ig~~~~rgiSGGErkRvs 180 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVI---SELGLEKCADTLIGNPGIRGLSGGERKRVS 180 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH---HHcCChhhccceecCCCCCccccchhhHHH
Confidence 11111111 1112222333222 2223221 11 3578889888 9
Q ss_pred HHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 191 ACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 191 ~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
++.+++.+|.+ +++|||+..|+......
T Consensus 181 ia~Ell~~P~i--LflDEPTSGLDS~sA~~ 208 (613)
T KOG0061|consen 181 IALELLTDPSI--LFLDEPTSGLDSFSALQ 208 (613)
T ss_pred HHHHHHcCCCE--EEecCCCCCcchhhHHH
Confidence 99999999987 99999999999998755
No 385
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.28 E-value=3.4e-11 Score=116.06 Aligned_cols=144 Identities=24% Similarity=0.323 Sum_probs=98.7
Q ss_pred CCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-c-----ccc--
Q 023675 79 STNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-C-----RHG-- 144 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i-----~~~-- 144 (279)
...|+++|+++.-+++. ++.+++|+.+.|.|+||||||||+++|+|+. +-++|.|-.-.+. + +.-
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW-P~g~G~I~~P~~~~~lflpQ~PY~p 468 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW-PWGSGRISMPADSALLFLPQRPYLP 468 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC-ccCCCceecCCCCceEEecCCCCCC
Confidence 46789999988887643 8999999999999999999999999999998 6667877665332 1 000
Q ss_pred ---cccCC-------CCCcccHHHHHHHH--HHHHHHHHhCCcchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 145 ---LNRDL-------SFKAEDRVENIRRI--GEVAKLFADAGVICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 145 ---~~~~~-------~~~~~~~~~~~~~v--~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
++..+ .+++++..+.+..+ .+.+..+.+ ...=-.-++++++|| +.||-++.+|++ ++|||.++
T Consensus 469 ~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~--~~~W~~vLS~GEqQRlafARilL~kP~~--v~LDEATs 544 (604)
T COG4178 469 QGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE--EDRWDRVLSGGEQQRLAFARLLLHKPKW--VFLDEATS 544 (604)
T ss_pred CccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc--cCcHhhhcChhHHHHHHHHHHHHcCCCE--EEEecchh
Confidence 00000 13333332222221 111111111 111122378899999 999999999999 99999999
Q ss_pred chhccChhhHHHHHhC
Q 023675 212 VCEARDPKGLYKLARE 227 (279)
Q Consensus 212 ~l~~R~~~~l~~~~~~ 227 (279)
.+++-....+++.+++
T Consensus 545 ALDe~~e~~l~q~l~~ 560 (604)
T COG4178 545 ALDEETEDRLYQLLKE 560 (604)
T ss_pred ccChHHHHHHHHHHHh
Confidence 9999999888887664
No 386
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.27 E-value=1.4e-11 Score=102.27 Aligned_cols=159 Identities=20% Similarity=0.196 Sum_probs=94.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-----cCCCCCc--------ccHHHHHHHHHHHHH
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-----RDLSFKA--------EDRVENIRRIGEVAK 168 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-----~~~~~~~--------~~~~~~~~~v~~~~~ 168 (279)
|++|.|-|+|-|||||++++|...+..| -+.+..|.+...+. ...++.+ ......+.-......
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p---~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ia 77 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEP---WLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIA 77 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS----EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCC---eEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998544 56677776654322 1223322 122333444445555
Q ss_pred HHHhCCcchhcccCChHHH-HHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCcccc-CcCCCCCCC
Q 023675 169 LFADAGVICIACLISPYRK-DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID-DPYEPPLNC 246 (279)
Q Consensus 169 ~~~~~~~~~i~~~~~~~~~-~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r-~~~~~~~~a 246 (279)
.+.+.|+.++++....+.. ..+.++.++...++..|-+.||.+.+.+|.. .+..+...+.... ...+....-
T Consensus 78 a~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~------~RgDR~~G~a~~q~~~Vh~~~~Y 151 (174)
T PF07931_consen 78 AMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRER------ARGDRPIGLAAWQAEHVHEGGRY 151 (174)
T ss_dssp HHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHH------HHTSSSTTHHHHHTTGGGTT---
T ss_pred HHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHH------hcCCcchHHHHHHHhhcccCCCC
Confidence 6678898888775433333 3566767777667777899999999999984 3333333322111 112233346
Q ss_pred ceEEEccCCCCCCHHHHHHHHHHHHH
Q 023675 247 EIVLKQMGDDCPSPADMVETVVSYLD 272 (279)
Q Consensus 247 ~~~i~~~~~~~~~~~e~~~~Il~~l~ 272 (279)
|+.||| +..+|++++++|++.|+
T Consensus 152 DleVDT---s~~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 152 DLEVDT---SATSPEECAREILARLE 174 (174)
T ss_dssp SEEEET---TSS-HHHHHHHHHTT--
T ss_pred CEEEEC---CCCCHHHHHHHHHHHhC
Confidence 799999 99999999999998764
No 387
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.26 E-value=2.3e-12 Score=125.12 Aligned_cols=163 Identities=15% Similarity=0.213 Sum_probs=102.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc---ccccCCCCCcccHHHHHHHHHHHHH-HHHh-CCcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---GLNRDLSFKAEDRVENIRRIGEVAK-LFAD-AGVI 176 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~---~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~-~~~~ 176 (279)
-..++|+|++||||||+++.|+..|+.+ ++|.|..-. +++...-|.......+++.-.++.. ++.. ..++
T Consensus 6 ~~~i~LiG~~GaGKttvg~~LA~~L~~~-----fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VI 80 (542)
T PRK14021 6 RPQAVIIGMMGAGKTRVGKEVAQMMRLP-----FADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIF 80 (542)
T ss_pred CccEEEECCCCCCHHHHHHHHHHHhCCC-----EEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEE
Confidence 3578999999999999999999999777 899887521 1111111222222222222222222 2222 2334
Q ss_pred hhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh----HHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675 177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG----LYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 177 ~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~----l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
+.+++....++++..+.+.+++..+ .|||+.|++.+.+|+... ++......++..++..|.++|... ++++|++
T Consensus 81 s~GGG~v~~~~n~~~L~~~~~~~g~-vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l~~~R~~~Y~~~-Ad~~i~~ 158 (542)
T PRK14021 81 SLGGGAPMTPSTQHALASYIAHGGR-VVYLDADPKEAMERANRGGGRPMLNGDANKRWKKLFKQRDPVFRQV-ANVHVHT 158 (542)
T ss_pred ECCCchhCCHHHHHHHHHHHhcCCE-EEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhh-CCEEEEC
Confidence 4444444455666666555554333 499999999999986421 221111123445666788888653 7899999
Q ss_pred cCCCCCCHHHHHHHHHHHHHhC
Q 023675 253 MGDDCPSPADMVETVVSYLDEN 274 (279)
Q Consensus 253 ~~~~~~~~~e~~~~Il~~l~~~ 274 (279)
+..++++++++|++.++..
T Consensus 159 ---~~~~~~~~~~~i~~~~~~~ 177 (542)
T PRK14021 159 ---RGLTPQAAAKKLIDMVAER 177 (542)
T ss_pred ---CCCCHHHHHHHHHHHHHhc
Confidence 8899999999999988763
No 388
>PRK13949 shikimate kinase; Provisional
Probab=99.25 E-value=2.3e-12 Score=106.90 Aligned_cols=153 Identities=18% Similarity=0.189 Sum_probs=85.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccC--CCCCcccHHHHHHHHHHHHHHHHhCC--cchh
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRD--LSFKAEDRVENIRRIGEVAKLFADAG--VICI 178 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~i 178 (279)
.|+|+|++||||||+++.|++.+..+ ++|.|.+-.. .... ..+.......+.+...++...+.... ++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~-----~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~ 77 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLS-----FIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVIST 77 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCC-----eecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 58999999999999999999998655 7887765211 1000 00111111112222222222222222 2223
Q ss_pred cccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh-----HHHHHhCC----CCCCCccccCcCCCCCCCceE
Q 023675 179 ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG-----LYKLAREG----KVKGFTGIDDPYEPPLNCEIV 249 (279)
Q Consensus 179 ~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~-----l~~~~~~~----~~~~~~~~r~~~~~~~~a~~~ 249 (279)
+++......+++..++ .++ .||||.|++.+.+|+... +....... .+..++..|.++|.. ++++
T Consensus 78 Ggg~~~~~~~~~~l~~----~~~-vi~L~~~~~~~~~Ri~~~~~~RP~~~~~~~~~~~~~i~~l~~~R~~~Y~~--ad~~ 150 (169)
T PRK13949 78 GGGAPCFFDNMELMNA----SGT-TVYLKVSPEVLFVRLRLAKQQRPLLKGKSDEELLDFIIEALEKRAPFYRQ--AKII 150 (169)
T ss_pred CCcccCCHHHHHHHHh----CCe-EEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHh--CCEE
Confidence 3333333334443332 234 389999999999987421 11000000 112234557777766 6799
Q ss_pred EEccCCCCCCHHHHHHHHHHHH
Q 023675 250 LKQMGDDCPSPADMVETVVSYL 271 (279)
Q Consensus 250 i~~~~~~~~~~~e~~~~Il~~l 271 (279)
|++ ++.+++++++.|++.|
T Consensus 151 id~---~~~~~~e~~~~I~~~~ 169 (169)
T PRK13949 151 FNA---DKLEDESQIEQLVQRL 169 (169)
T ss_pred EEC---CCCCHHHHHHHHHHhC
Confidence 999 8889999999998764
No 389
>PLN02199 shikimate kinase
Probab=99.23 E-value=3.6e-12 Score=113.28 Aligned_cols=157 Identities=15% Similarity=0.155 Sum_probs=94.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-cc---CCCCCcccHHHHHHHHHHHHHHHHh-CC-
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-NR---DLSFKAEDRVENIRRIGEVAKLFAD-AG- 174 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-~~---~~~~~~~~~~~~~~~v~~~~~~~~~-~~- 174 (279)
+|..|+|+|++||||||+++.|+..+..+ ++|.|.+-+.. .+ ...|.......++....++...+.. .+
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~-----fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~ 175 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYT-----FFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQV 175 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCE
Confidence 48899999999999999999999988666 89998763221 10 0011111111222222222222222 12
Q ss_pred cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChh------hHHHHHh-------CCCCCCCccccCcCC
Q 023675 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK------GLYKLAR-------EGKVKGFTGIDDPYE 241 (279)
Q Consensus 175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~------~l~~~~~-------~~~~~~~~~~r~~~~ 241 (279)
++..+++......+ +.++.. . +.|||+.|++.+.+|+.. +++.... ...+..++..|.++|
T Consensus 176 VIStGGG~V~~~~n----~~~L~~-G-~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~~~~L~~L~~~R~plY 249 (303)
T PLN02199 176 VVSTGGGAVIRPIN----WKYMHK-G-ISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAY 249 (303)
T ss_pred EEECCCcccCCHHH----HHHHhC-C-eEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhHHHHHHHHHHHHHHHH
Confidence 22233322222333 334443 3 349999999999999863 1221000 023445666789999
Q ss_pred CCCCCceEEE------------ccCCCCCCHHHHHHHHHHHHHh
Q 023675 242 PPLNCEIVLK------------QMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 242 ~~~~a~~~i~------------~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
.. ++++|+ + +..++++++.+|++.++.
T Consensus 250 ~~--Ad~~V~~~~~~~~~~~~~t---d~~s~~ei~~eIl~~l~~ 288 (303)
T PLN02199 250 TN--ANARVSLENIAAKRGYKNV---SDLTPTEIAIEAFEQVLS 288 (303)
T ss_pred Hh--CCEEEeccccccccccccc---CCCCHHHHHHHHHHHHHH
Confidence 87 889998 6 788999999999888764
No 390
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.23 E-value=3.7e-11 Score=124.89 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=111.1
Q ss_pred CCCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc----cc--
Q 023675 79 STNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HG-- 144 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~----~~-- 144 (279)
...+++++.+++... +.||++++|+.+++||+-|||||+|+.+|.|.+ ...+|.+.++|.--. .+
T Consensus 516 ~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm-~~~sG~v~v~gsiaYv~Q~pWI~ 594 (1381)
T KOG0054|consen 516 ENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEM-PKLSGSVAVNGSVAYVPQQPWIQ 594 (1381)
T ss_pred CceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCc-ccccceEEEcCeEEEeccccHhh
Confidence 345788888777653 338999999999999999999999999999999 788999999997321 11
Q ss_pred ---cccCCCCCcccHHHHHHHHHHHHHHHHhCCcc---------hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 145 ---LNRDLSFKAEDRVENIRRIGEVAKLFADAGVI---------CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 145 ---~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---------~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
++.++-|...-..+.++.+.+.+.+-.|.... .-+..+++||++| .+||+.-+++++ .+||-|++
T Consensus 595 ngTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adI--YLLDDplS 672 (1381)
T KOG0054|consen 595 NGTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADI--YLLDDPLS 672 (1381)
T ss_pred CCcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCE--EEEcCcch
Confidence 12223333333345566666666554442222 2344589999999 999999999988 89999999
Q ss_pred chhccChhhHHHHHhCCCCC
Q 023675 212 VCEARDPKGLYKLAREGKVK 231 (279)
Q Consensus 212 ~l~~R~~~~l~~~~~~~~~~ 231 (279)
.++....+.+++..-.+.+.
T Consensus 673 AVDahvg~~if~~ci~~~L~ 692 (1381)
T KOG0054|consen 673 AVDAHVGKHIFEECIRGLLR 692 (1381)
T ss_pred hhhHhhhHHHHHHHHHhhhc
Confidence 99999999888765555444
No 391
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.22 E-value=6.8e-12 Score=103.56 Aligned_cols=157 Identities=22% Similarity=0.257 Sum_probs=86.7
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc------cHHHHHHHHHHH-HHHHHh
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE------DRVENIRRIGEV-AKLFAD 172 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~------~~~~~~~~v~~~-~~~~~~ 172 (279)
.++..|+|+|++||||||+++.|+..++.+ ++|+|.+..... +.... ....+.....+. ..+...
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~-----~~d~d~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~ 73 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYD-----FIDTDHLIEARA---GKSIPEIFEEEGEAAFRELEEEVLAELLAR 73 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHc---CCCHHHHHHHHCHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999999999998544 888887642211 11111 111122222222 222222
Q ss_pred CCc-chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC-----CCCCCCccccCcCCCCCCC
Q 023675 173 AGV-ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE-----GKVKGFTGIDDPYEPPLNC 246 (279)
Q Consensus 173 ~~~-~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~-----~~~~~~~~~r~~~~~~~~a 246 (279)
.+. +..+.........+..++ . ..+.+++++|.+.+.+|..++....... ..+..+...+.++|.. .+
T Consensus 74 ~~~vi~~g~~~~~~~~~r~~l~----~-~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 147 (175)
T PRK00131 74 HNLVISTGGGAVLREENRALLR----E-RGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLYEERDPLYEE-VA 147 (175)
T ss_pred CCCEEEeCCCEeecHHHHHHHH----h-CCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHh-hc
Confidence 222 111111112233343332 2 3355999999999988885431000000 0011111122232221 26
Q ss_pred ceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 247 EIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 247 ~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
+++|+| +..+++++++.|++.++.
T Consensus 148 dl~idt---~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 148 DITVET---DGRSPEEVVNEILEKLEA 171 (175)
T ss_pred CeEEeC---CCCCHHHHHHHHHHHHHh
Confidence 799999 899999999999999874
No 392
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.21 E-value=4.4e-11 Score=127.24 Aligned_cols=132 Identities=17% Similarity=0.122 Sum_probs=88.8
Q ss_pred ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc---cCCccEEEEcCeeccc---ccccCCCCCccc--------H
Q 023675 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH---WRGKLTYILDGDNCRH---GLNRDLSFKAED--------R 156 (279)
Q Consensus 91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~---~~~~G~i~ldgd~i~~---~~~~~~~~~~~~--------~ 156 (279)
..++.|+.+++|++++|+|+||||||||+++|+|++. .+.+|.|.++|.++.+ .....++|..++ -
T Consensus 76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV 155 (1394)
T TIGR00956 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTV 155 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCH
Confidence 3456688999999999999999999999999999862 4679999999987632 111112221111 0
Q ss_pred HHHHH-------------------HHHHHH-HHHHhCCcch---------hcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675 157 VENIR-------------------RIGEVA-KLFADAGVIC---------IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (279)
Q Consensus 157 ~~~~~-------------------~v~~~~-~~~~~~~~~~---------i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l 206 (279)
++.+. ...... .++...++.. .+..+|+++++| .++++++.+|++ +++
T Consensus 156 ~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~v--lll 233 (1394)
T TIGR00956 156 GETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKI--QCW 233 (1394)
T ss_pred HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCE--EEE
Confidence 00000 000111 1222233322 134588899999 999999999988 999
Q ss_pred eCCccchhccChhhHHHH
Q 023675 207 DVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 207 d~p~~~l~~R~~~~l~~~ 224 (279)
|||+..|+......+.+.
T Consensus 234 DEPTsgLD~~~~~~i~~~ 251 (1394)
T TIGR00956 234 DNATRGLDSATALEFIRA 251 (1394)
T ss_pred eCCCCCcCHHHHHHHHHH
Confidence 999999999887765543
No 393
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.21 E-value=1.2e-10 Score=101.09 Aligned_cols=45 Identities=18% Similarity=0.065 Sum_probs=36.6
Q ss_pred cccCChHHHHH-HHHHHhCCCC--CccEEEEeCCccchhccChhhHHHHH
Q 023675 179 ACLISPYRKDR-DACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 179 ~~~~~~~~~~r-~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
...+++++++| .++++++.+| ++ +++|||+..++....+.+++.+
T Consensus 135 ~~~LSgG~~qrv~laral~~~p~~~l--lllDEPt~gLD~~~~~~l~~~l 182 (226)
T cd03270 135 APTLSGGEAQRIRLATQIGSGLTGVL--YVLDEPSIGLHPRDNDRLIETL 182 (226)
T ss_pred cCcCCHHHHHHHHHHHHHHhCCCCCE--EEEeCCccCCCHHHHHHHHHHH
Confidence 44578888888 8999999887 47 9999999999998877765543
No 394
>PTZ00243 ABC transporter; Provisional
Probab=99.20 E-value=3e-11 Score=129.65 Aligned_cols=128 Identities=19% Similarity=0.205 Sum_probs=84.3
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec--cc--cc-----ccCCCCCcccHHHHHHHH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RH--GL-----NRDLSFKAEDRVENIRRI 163 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i--~~--~~-----~~~~~~~~~~~~~~~~~v 163 (279)
++.||++++|++++|+|+||||||||+++|+|.+ .|.+|.|.+++.-- .+ .+ ...+.+......+.+..+
T Consensus 677 ~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~-~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~~~~~~ 755 (1560)
T PTZ00243 677 RDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAARLADA 755 (1560)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHHHHHHH
Confidence 4559999999999999999999999999999999 89999998764211 00 01 001111110001111111
Q ss_pred HHHHH---HHHh--CCc----chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 164 GEVAK---LFAD--AGV----ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 164 ~~~~~---~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
...+. .+.. .|. ...+..+++++++| .++|+++.+|++ ++||+|+..++....+.+++
T Consensus 756 ~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~i--llLDEP~saLD~~~~~~i~~ 823 (1560)
T PTZ00243 756 VRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDV--YLLDDPLSALDAHVGERVVE 823 (1560)
T ss_pred HHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEcCccccCCHHHHHHHHH
Confidence 11111 1111 122 12345689999999 999999999998 99999999999877666554
No 395
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.20 E-value=2.1e-11 Score=103.60 Aligned_cols=131 Identities=16% Similarity=0.163 Sum_probs=80.4
Q ss_pred eecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---------ccEEEEcCeecccc-cccCCCCCcccHHHH
Q 023675 90 DKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---------KLTYILDGDNCRHG-LNRDLSFKAEDRVEN 159 (279)
Q Consensus 90 ~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---------~G~i~ldgd~i~~~-~~~~~~~~~~~~~~~ 159 (279)
+|..+.++++.+| +++|+|+||||||||+++|.+++ .+. .+.+.++|.+.... ....+++.+++...+
T Consensus 11 ~~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 11 SFADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVL-GEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR 88 (197)
T ss_pred CcCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHh-ccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc
Confidence 4556678999999 99999999999999999999987 333 23455555554210 011122222211100
Q ss_pred -----HHHHHHHHHHHHhCCcchhcccCChHHHHH-HHHHHhC----CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 160 -----IRRIGEVAKLFADAGVICIACLISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 160 -----~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r-~~ar~l~----~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
..++.++... ..-.......+++++++| .++++++ ..+++ +++|||+..++......+.+.+.
T Consensus 89 ~~~~~~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~i--lllDEP~~~LD~~~~~~l~~~l~ 161 (197)
T cd03278 89 YSIISQGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPF--CVLDEVDAALDDANVERFARLLK 161 (197)
T ss_pred eeEEehhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 1122222222 111122345678888888 7788765 34467 89999999999988777665444
No 396
>PLN03140 ABC transporter G family member; Provisional
Probab=99.19 E-value=5e-11 Score=126.93 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=87.9
Q ss_pred cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeeccccc-ccCCCCCccc--------HHHH
Q 023675 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCRHGL-NRDLSFKAED--------RVEN 159 (279)
Q Consensus 92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~~~~-~~~~~~~~~~--------~~~~ 159 (279)
.++.|+.+++|++++|+||||||||||+++|+|++ .++ +|.|.++|.++.+.. ...++|..++ .++.
T Consensus 181 L~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l-~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~Et 259 (1470)
T PLN03140 181 LKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKL-DPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKET 259 (1470)
T ss_pred ccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCC-CCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHH
Confidence 34558999999999999999999999999999999 777 899999998763211 1111111110 0000
Q ss_pred HHH-------------------------------H----H-----------HHHHHHHhCCcch---------hcccCCh
Q 023675 160 IRR-------------------------------I----G-----------EVAKLFADAGVIC---------IACLISP 184 (279)
Q Consensus 160 ~~~-------------------------------v----~-----------~~~~~~~~~~~~~---------i~~~~~~ 184 (279)
+.. + . ....++...|+.. ....+|+
T Consensus 260 L~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSG 339 (1470)
T PLN03140 260 LDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISG 339 (1470)
T ss_pred HHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCc
Confidence 000 0 0 0011222233321 2246888
Q ss_pred HHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 185 YRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 185 ~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
|+++| .++++++.+|++ +++|||+..|+......+.+.
T Consensus 340 GerkRVsia~aL~~~p~v--lllDEPTsGLDs~t~~~i~~~ 378 (1470)
T PLN03140 340 GQKKRVTTGEMIVGPTKT--LFMDEISTGLDSSTTYQIVKC 378 (1470)
T ss_pred ccceeeeehhhhcCCCcE--EEEeCCCcCccHHHHHHHHHH
Confidence 99998 899999999988 999999999999887765543
No 397
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.15 E-value=1.9e-10 Score=93.07 Aligned_cols=112 Identities=27% Similarity=0.318 Sum_probs=73.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHH-HHhCCcch
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKL-FADAGVIC 177 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~ 177 (279)
+++|+|++||||||+++.|+..++ ..++++|.++.. +.....+.......+...+.+.... ....+..+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~v 75 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG-----APFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGV 75 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC-----CEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCE
Confidence 478999999999999999999863 358899998753 2222333333344444444433322 21234445
Q ss_pred hcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 178 i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
++......+..|+.+++++....+..+++++|.+.+.+|...+
T Consensus 76 Vid~~~~~~~~r~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (150)
T cd02021 76 VVACSALKRIYRDILRGGAANPRVRFVHLDGPREVLAERLAAR 118 (150)
T ss_pred EEEeccccHHHHHHHHhcCCCCCEEEEEEECCHHHHHHHHHhc
Confidence 5555555566777777776444666799999999999988543
No 398
>PRK13947 shikimate kinase; Provisional
Probab=99.14 E-value=2e-11 Score=100.87 Aligned_cols=154 Identities=15% Similarity=0.189 Sum_probs=85.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc------cHHHHHHHHHHHHHHHHhCCcch
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE------DRVENIRRIGEVAKLFADAGVIC 177 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~~~~ 177 (279)
.|+|+|++||||||+++.|+..+..+ ++|.|.+.+... +.+.. ....+......+...+......+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~-----~id~d~~~~~~~---g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~v 74 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG-----FIDTDKEIEKMT---GMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLV 74 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC-----EEECchhhhhhc---CCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeE
Confidence 48999999999999999999999766 889887643321 22211 11111111111222222222222
Q ss_pred h--cccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH-hCCC----CCCCccccCcCCCCCCCceEE
Q 023675 178 I--ACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA-REGK----VKGFTGIDDPYEPPLNCEIVL 250 (279)
Q Consensus 178 i--~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~-~~~~----~~~~~~~r~~~~~~~~a~~~i 250 (279)
+ +.+......++..++. .. +.|||+.|.+.+.+|+..+-.... .... +......|.++|.. ++++|
T Consensus 75 i~~g~g~vl~~~~~~~l~~----~~-~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~r~~~y~~--ad~~I 147 (171)
T PRK13947 75 IATGGGVVLNPENVVQLRK----NG-VVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKEREPFYDF--ADYTI 147 (171)
T ss_pred EECCCCCcCCHHHHHHHHh----CC-EEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHHHHh--cCEEE
Confidence 2 1111122233333322 22 349999999999888742200000 0000 01112224456643 67999
Q ss_pred EccCCCCCCHHHHHHHHHH-HHHhCC
Q 023675 251 KQMGDDCPSPADMVETVVS-YLDENG 275 (279)
Q Consensus 251 ~~~~~~~~~~~e~~~~Il~-~l~~~~ 275 (279)
++ +..++++++++|.+ ++..+|
T Consensus 148 dt---~~~~~~~i~~~I~~~~~~~~~ 170 (171)
T PRK13947 148 DT---GDMTIDEVAEEIIKAYLKLKN 170 (171)
T ss_pred EC---CCCCHHHHHHHHHHHHHhhhc
Confidence 99 88999999999998 776654
No 399
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.12 E-value=5.6e-10 Score=93.86 Aligned_cols=155 Identities=17% Similarity=0.192 Sum_probs=81.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc----ccCCCCCcccHHHHHHHH--------------
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL----NRDLSFKAEDRVENIRRI-------------- 163 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~----~~~~~~~~~~~~~~~~~v-------------- 163 (279)
|++++|+||||||||||+++|++.+ .+ .+.+.+..+.... ...+.+..++..+.+..-
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg 77 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE-QT---QLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYG 77 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC-CC---eEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccC
Confidence 7899999999999999999999987 33 3555554443211 111233333322211110
Q ss_pred --HHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCC
Q 023675 164 --GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYE 241 (279)
Q Consensus 164 --~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~ 241 (279)
.++... ...+..++.. ++...+...+..... .+..+++++|.+.+.+|+.++- ......+.... .+.++|
T Consensus 78 ~~~~~~~~-l~~g~~VI~~---G~~~~~~~~~~~~~~-~~~vi~l~~s~e~l~~RL~~R~--~~~~~~i~~rl-~r~~~~ 149 (186)
T PRK10078 78 VGIEIDLW-LHAGFDVLVN---GSRAHLPQARARYQS-ALLPVCLQVSPEILRQRLENRG--RENASEINARL-ARAARY 149 (186)
T ss_pred CcHHHHHH-HhCCCEEEEe---ChHHHHHHHHHHcCC-CEEEEEEeCCHHHHHHHHHHhC--CCCHHHHHHHH-HHhhhh
Confidence 001111 1223333322 222233334444443 3445899999999999985320 00000000000 133445
Q ss_pred CCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 242 PPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 242 ~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
.. ++.++.. +..++++++++|...|..
T Consensus 150 ~~--ad~~vi~---~~~s~ee~~~~i~~~l~~ 176 (186)
T PRK10078 150 QP--QDCHTLN---NDGSLRQSVDTLLTLLHL 176 (186)
T ss_pred cc--CCEEEEe---CCCCHHHHHHHHHHHHhh
Confidence 44 5544443 456899999999988864
No 400
>PRK13946 shikimate kinase; Provisional
Probab=99.12 E-value=3.1e-11 Score=101.39 Aligned_cols=154 Identities=18% Similarity=0.201 Sum_probs=88.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHHHHHHHhCCc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGV 175 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~~~~~~~~~~ 175 (279)
...|+|+|++||||||+++.|+..|..+ ++|.|.+..... +.+..+. ..++..+ .++...+...+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~-----~id~D~~~~~~~---g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~ 81 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLP-----FLDADTEIERAA---RMTIAEIFAAYGEPEFRDLERRVIARLLKGGP 81 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC-----eECcCHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCC
Confidence 4579999999999999999999998665 889886532211 1111111 0111111 111111222222
Q ss_pred chhcc--cCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhH----HH-HHhCCCCCCCccccCcCCCCCCCce
Q 023675 176 ICIAC--LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL----YK-LAREGKVKGFTGIDDPYEPPLNCEI 248 (279)
Q Consensus 176 ~~i~~--~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l----~~-~~~~~~~~~~~~~r~~~~~~~~a~~ 248 (279)
.++.. ........|+.++. . . +.|||+.|.+.+.+|+.++- +. ......+......|.++|.. +++
T Consensus 82 ~Vi~~ggg~~~~~~~r~~l~~---~-~-~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~~R~~~y~~--~dl 154 (184)
T PRK13946 82 LVLATGGGAFMNEETRAAIAE---K-G-ISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLMEERYPVYAE--ADL 154 (184)
T ss_pred eEEECCCCCcCCHHHHHHHHc---C-C-EEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHHHHHHHHHh--CCE
Confidence 22222 12233344444432 2 2 45999999999998875331 00 00000111222335566654 679
Q ss_pred EEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 249 VLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 249 ~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
++++ +..+++++++.|+.++..
T Consensus 155 ~i~~---~~~~~~~~~~~i~~~i~~ 176 (184)
T PRK13946 155 TVAS---RDVPKEVMADEVIEALAA 176 (184)
T ss_pred EEEC---CCCCHHHHHHHHHHHHHH
Confidence 9998 889999999999998875
No 401
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.10 E-value=1.4e-10 Score=118.80 Aligned_cols=141 Identities=18% Similarity=0.187 Sum_probs=93.3
Q ss_pred CCeEEeecceeec---------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCC--ccEEEEcCeecc-ccccc
Q 023675 80 TNILWHKNSVDKR---------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDNCR-HGLNR 147 (279)
Q Consensus 80 ~~i~~~~~~~~~~---------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~--~G~i~ldgd~i~-~~~~~ 147 (279)
.-..|.|+.+.-. ++++=-++||.+.+|+|.||||||||++.|+++. ..+ +|.|+++|.+.. +....
T Consensus 786 ~V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~-t~G~I~Gdi~i~G~p~~q~tF~R 864 (1391)
T KOG0065|consen 786 DVFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK-TGGYIEGDILISGFPKDQETFAR 864 (1391)
T ss_pred ceEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc-ccceEEeEEEECCeeCchhhhcc
Confidence 3456777655442 1224567899999999999999999999999997 444 789999998876 33333
Q ss_pred CCCCCcc--------------------------cHHHHHHHHHHHHHHHHh-----CCcchhcccCChHHHHH-HHHHHh
Q 023675 148 DLSFKAE--------------------------DRVENIRRIGEVAKLFAD-----AGVICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 148 ~~~~~~~--------------------------~~~~~~~~v~~~~~~~~~-----~~~~~i~~~~~~~~~~r-~~ar~l 195 (279)
..||..+ +..+..+.+.++..++.- .-+...+.+++..|+.| -++-++
T Consensus 865 ~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVEL 944 (1391)
T KOG0065|consen 865 VSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVEL 944 (1391)
T ss_pred ccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEE
Confidence 3333332 112333445555544321 11112334577766666 677889
Q ss_pred CCCCCccEEEEeCCccchhccChhhHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
+.+|+.+ ++||||++.|+.|...-+.
T Consensus 945 vA~P~~i-lFLDEPTSGLDsqaA~~i~ 970 (1391)
T KOG0065|consen 945 VANPSSI-LFLDEPTSGLDSQAAAIVM 970 (1391)
T ss_pred ecCCcee-EEecCCCCCccHHHHHHHH
Confidence 9998544 8999999999999765433
No 402
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.09 E-value=2.5e-10 Score=109.26 Aligned_cols=47 Identities=30% Similarity=0.369 Sum_probs=36.3
Q ss_pred eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+.--++..+.. +|.+++|.|+|||||||+++.|++.|+ ..++|.+.+
T Consensus 272 ~RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~-----~~~~d~g~~ 318 (512)
T PRK13477 272 TRLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG-----LLYLDTGAM 318 (512)
T ss_pred eEEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcC-----CeEecCCce
Confidence 33334445555 789999999999999999999999884 447886655
No 403
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.08 E-value=1.8e-09 Score=102.52 Aligned_cols=150 Identities=20% Similarity=0.224 Sum_probs=103.8
Q ss_pred CCCCeEEeecceeecC-C------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee----c-----
Q 023675 78 KSTNILWHKNSVDKRD-R------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN----C----- 141 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~-~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~----i----- 141 (279)
....|++++++++.+. + .||+++.|+.+.|+||||||||+|++.|++++ +..+|.+..-.+. +
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW-p~~~G~l~k~~~~~~~~lfflPQ 508 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW-PSTGGKLTKPTDGGPKDLFFLPQ 508 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc-ccCCCeEEecccCCCCceEEecC
Confidence 3456899999998887 2 28999999999999999999999999999987 5567777544332 2
Q ss_pred cc-----ccccCCCCC------------cccHHHHHHHHHHHHHHHHhCCcch------hcccCChHHHHH-HHHHHhCC
Q 023675 142 RH-----GLNRDLSFK------------AEDRVENIRRIGEVAKLFADAGVIC------IACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 142 ~~-----~~~~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~~~~------i~~~~~~~~~~r-~~ar~l~~ 197 (279)
+. .++.++.|. .++..+.... .++..+....|-.. -.+-++++++|| ..||-...
T Consensus 509 rPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~-v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~ 587 (659)
T KOG0060|consen 509 RPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILEN-VQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYH 587 (659)
T ss_pred CCCccccchhheeeccCccccccccCCCHHHHHHHHHH-hhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhc
Confidence 00 112222222 1111122222 22333433322222 234589999999 88999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHhCCCCC
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK 231 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~ 231 (279)
+|+| .+|||.++.+..-....+|+..++-.+.
T Consensus 588 kPk~--AiLDE~TSAv~~dvE~~~Yr~~r~~giT 619 (659)
T KOG0060|consen 588 KPKF--AILDECTSAVTEDVEGALYRKCREMGIT 619 (659)
T ss_pred CCce--EEeechhhhccHHHHHHHHHHHHHcCCe
Confidence 9999 9999999999999988899887765544
No 404
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.08 E-value=3e-10 Score=99.92 Aligned_cols=157 Identities=18% Similarity=0.216 Sum_probs=88.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHH-HHHHHHHHHHhCCcchhcccC
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIR-RIGEVAKLFADAGVICIACLI 182 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~i~~~~ 182 (279)
+|+|+|++||||||+++.|+..+...+...+.+++|.++..+.. +.. ......+ ............+..++.+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~---~~~-~~e~~~~~~~~~~i~~~l~~~~~VI~D~~ 76 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV---WKE-KYEEFIRDSTLYLIKTALKNKYSVIVDDT 76 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH---hhH-HhHHHHHHHHHHHHHHHHhCCCeEEEecc
Confidence 47899999999999999999988544556778888777543210 111 1111111 111112222234555565555
Q ss_pred ChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhhHHHHHhCCCCCC--CccccCcC------CCCCCCceEEEc
Q 023675 183 SPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG--FTGIDDPY------EPPLNCEIVLKQ 252 (279)
Q Consensus 183 ~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~--~~~~r~~~------~~~~~a~~~i~~ 252 (279)
......|.....++. ...+..+++++|.+.+.+|..++ ...+.. +......| |.+..++++|++
T Consensus 77 ~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R------~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~vd~ 150 (249)
T TIGR03574 77 NYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIER------GEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTIDT 150 (249)
T ss_pred chHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhC------CCCCCHHHHHHHHHhhCCCCCCCCccCceEEecC
Confidence 444444433333332 22456689999999999987432 111110 00111112 222346788877
Q ss_pred cCCCC-CCHHHHHHHHHHHHHh
Q 023675 253 MGDDC-PSPADMVETVVSYLDE 273 (279)
Q Consensus 253 ~~~~~-~~~~e~~~~Il~~l~~ 273 (279)
+. .+.+++++.|+..+..
T Consensus 151 ---~~~~~~~ei~~~i~~~~~~ 169 (249)
T TIGR03574 151 ---TKKIDYNEILEEILEISEN 169 (249)
T ss_pred ---CCCCCHHHHHHHHHHHhhc
Confidence 43 5789999999987653
No 405
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.06 E-value=1.6e-09 Score=90.32 Aligned_cols=154 Identities=16% Similarity=0.137 Sum_probs=77.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-ccccccCC---CCCcccHHHHH----------------H
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGLNRDL---SFKAEDRVENI----------------R 161 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~~~~~~~~---~~~~~~~~~~~----------------~ 161 (279)
|++++|+|+|||||||+++.|+..+. .. |.+.+..... +....... ..+.+...... .
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA-GD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-cC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 57899999999999999999999873 32 3332211111 10000000 01111110000 0
Q ss_pred HHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCC----CCCCcccc
Q 023675 162 RIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGK----VKGFTGID 237 (279)
Q Consensus 162 ~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~----~~~~~~~r 237 (279)
.-..+...+ ..+..++..+. ...+...+.... .+..+||++|.+.+.+|+..+ ... +.... .+
T Consensus 79 ~~~~i~~~~-~~g~~vv~~g~---~~~~~~~~~~~~--~~~~i~l~~~~~~~~~Rl~~R------~~~~~~~~~~rl-~~ 145 (179)
T TIGR02322 79 IPAEIDQWL-EAGDVVVVNGS---RAVLPEARQRYP--NLLVVNITASPDVLAQRLAAR------GRESREEIEERL-AR 145 (179)
T ss_pred ChHHHHHHH-hcCCEEEEECC---HHHHHHHHHHCC--CcEEEEEECCHHHHHHHHHHc------CCCCHHHHHHHH-HH
Confidence 000111112 22333333322 122334454444 345689999999999998543 110 00111 13
Q ss_pred CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 238 DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 238 ~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
.++|....+++++.. +..++++++.+|.+.|..
T Consensus 146 ~~~~~~~~~~~~vi~---~~~~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 146 SARFAAAPADVTTID---NSGSLEVAGETLLRLLRK 178 (179)
T ss_pred HhhcccccCCEEEEe---CCCCHHHHHHHHHHHHcc
Confidence 333332235666555 567899999999988764
No 406
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.05 E-value=7e-10 Score=104.52 Aligned_cols=143 Identities=15% Similarity=0.141 Sum_probs=95.6
Q ss_pred CCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccccCC
Q 023675 80 TNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~~~ 149 (279)
.-+-+.|++|.|.++. +|-+..++-+++|||||+|||||++++.+.+ .|..|.+.-.....-. ......
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl-~p~~G~vs~~~H~~~~~y~Qh~~e~l 466 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDL-QPTIGMVSRHSHNKLPRYNQHLAEQL 466 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcc-ccccccccccccccchhhhhhhHhhc
Confidence 4578899999998763 7889999999999999999999999999999 8988888766654421 111111
Q ss_pred CCCcccHHHHH------HHHHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccC
Q 023675 150 SFKAEDRVENI------RRIGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARD 217 (279)
Q Consensus 150 ~~~~~~~~~~~------~~v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~ 217 (279)
.++.....-.+ .+...+-.++...|+. .....+|.+++.| ..++.+++.|.+ ++||||+++++---
T Consensus 467 dl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~l--LlLDEPtnhLDi~t 544 (614)
T KOG0927|consen 467 DLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHL--LLLDEPTNHLDIET 544 (614)
T ss_pred CcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcE--EEecCCCcCCCchh
Confidence 22221111000 0112222233333332 2344577788777 778889999887 99999999998766
Q ss_pred hhhHHHHH
Q 023675 218 PKGLYKLA 225 (279)
Q Consensus 218 ~~~l~~~~ 225 (279)
...+.+.+
T Consensus 545 id~laeai 552 (614)
T KOG0927|consen 545 IDALAEAI 552 (614)
T ss_pred HHHHHHHH
Confidence 55554433
No 407
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.04 E-value=7.2e-10 Score=113.45 Aligned_cols=140 Identities=15% Similarity=0.178 Sum_probs=97.1
Q ss_pred CeEEeecceeec------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCC
Q 023675 81 NILWHKNSVDKR------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~ 149 (279)
.+...++...|. ++.++.+++|++.++.|+|||||||++++|.|.. .|++|.+++.|.++... ....+
T Consensus 564 ~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred eEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhc
Confidence 344555555554 3459999999999999999999999999999999 99999999999988643 23446
Q ss_pred CCCcccHH-----------HHHHHHH--------H-HHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 150 SFKAEDRV-----------ENIRRIG--------E-VAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 150 ~~~~~~~~-----------~~~~~v~--------~-~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
||.++.-. +.+.++. + +..++...++.. -+...+++.+.| ..+.+++.+|++ |
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~v--i 720 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSV--I 720 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCE--E
Confidence 77776421 1122111 1 112222222221 123345555555 889999999988 9
Q ss_pred EEeCCccchhccChhhHHH
Q 023675 205 FMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~ 223 (279)
+||||+..++...++.+..
T Consensus 721 ~LDEPstGmDP~arr~lW~ 739 (885)
T KOG0059|consen 721 LLDEPSTGLDPKARRHLWD 739 (885)
T ss_pred EecCCCCCCCHHHHHHHHH
Confidence 9999999999977776554
No 408
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.03 E-value=7.3e-11 Score=107.09 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=96.1
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH-----HHHHHH--HHHHH
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-----ENIRRI--GEVAK 168 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~-----~~~~~v--~~~~~ 168 (279)
...+.++..|+|+|++||||||+++.|+..++.+ ++|.|...... .+.+..+.. ..++.. ..+..
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~-----~id~D~~i~~~---~G~~i~ei~~~~G~~~fr~~e~~~l~~ 198 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLGVP-----FVELNREIERE---AGLSVSEIFALYGQEGYRRLERRALER 198 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCC-----EEeHHHHHHHH---hCCCHHHHHHHHCHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999998655 66766442111 122222111 111111 11222
Q ss_pred HHHhCCcchhcccCCh--HHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhH-----HH-HHhCCCCCCCccccCcC
Q 023675 169 LFADAGVICIACLISP--YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL-----YK-LAREGKVKGFTGIDDPY 240 (279)
Q Consensus 169 ~~~~~~~~~i~~~~~~--~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l-----~~-~~~~~~~~~~~~~r~~~ 240 (279)
++...+..++..+.+. ....+.. +.. .++.|||++|.+.+.+|+.++. .. ......+......|.++
T Consensus 199 ll~~~~~~VI~~Ggg~v~~~~~~~~---l~~--~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~~~~~e~i~~~~~~R~~~ 273 (309)
T PRK08154 199 LIAEHEEMVLATGGGIVSEPATFDL---LLS--HCYTVWLKASPEEHMARVRAQGDLRPMADNREAMEDLRRILASREPL 273 (309)
T ss_pred HHhhCCCEEEECCCchhCCHHHHHH---HHh--CCEEEEEECCHHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHHHHHH
Confidence 2332333333322221 1122222 222 3566999999999988875321 00 00001122233446677
Q ss_pred CCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675 241 EPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278 (279)
Q Consensus 241 ~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~ 278 (279)
|.. ++++|++ +..++++++++|+..+.....++
T Consensus 274 y~~--ad~~I~t---~~~s~ee~~~~I~~~l~~~~~~~ 306 (309)
T PRK08154 274 YAR--ADAVVDT---SGLTVAQSLARLRELVRPALGLP 306 (309)
T ss_pred HHh--CCEEEEC---CCCCHHHHHHHHHHHHHHHhccC
Confidence 764 7899999 88899999999999998765544
No 409
>PRK00625 shikimate kinase; Provisional
Probab=99.03 E-value=1.1e-10 Score=97.18 Aligned_cols=157 Identities=12% Similarity=0.106 Sum_probs=83.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCCCCcc------cHHHHHHHHHHHHHHHHhC-Cc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLSFKAE------DRVENIRRIGEVAKLFADA-GV 175 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~-~~ 175 (279)
.|.|+|++||||||+++.|+..+..+ ++|.|++-.. .......+.. ....++..-.+....+... .+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~-----~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~~~V 76 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLP-----FFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVIPSI 76 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----EEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccCCeE
Confidence 58999999999999999999998655 7888865221 1100000111 1111111111111111111 22
Q ss_pred chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh-HHHHH-hCCCCCCCccccCcCCCCCCCceEEEcc
Q 023675 176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG-LYKLA-REGKVKGFTGIDDPYEPPLNCEIVLKQM 253 (279)
Q Consensus 176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~-l~~~~-~~~~~~~~~~~r~~~~~~~~a~~~i~~~ 253 (279)
+..+++.....+.+. .+.... +.+||+.|++.+.+|+.++ +.+.. ....+..++..|.++|... +|++|+++
T Consensus 77 Is~GGg~~~~~e~~~----~l~~~~-~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~~ll~~R~~~Y~~~-ad~~i~~~ 150 (173)
T PRK00625 77 VALGGGTLMIEPSYA----HIRNRG-LLVLLSLPIATIYQRLQKRGLPERLKHAPSLEEILSQRIDRMRSI-ADYIFSLD 150 (173)
T ss_pred EECCCCccCCHHHHH----HHhcCC-EEEEEECCHHHHHHHHhcCCCCcccCcHHHHHHHHHHHHHHHHHH-CCEEEeCC
Confidence 222322222223332 333323 3499999999999998543 11100 0112334456677777643 77777652
Q ss_pred ---CCCCCCHHHHHHHHHHHH
Q 023675 254 ---GDDCPSPADMVETVVSYL 271 (279)
Q Consensus 254 ---~~~~~~~~e~~~~Il~~l 271 (279)
.|+..+...+++.++..|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~ 171 (173)
T PRK00625 151 HVAETSSESLMRACQSFCTLL 171 (173)
T ss_pred CcccCCCCCHHHHHHHHHHHh
Confidence 235667777888777665
No 410
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.00 E-value=1.1e-11 Score=101.65 Aligned_cols=148 Identities=19% Similarity=0.214 Sum_probs=82.4
Q ss_pred CCChHHHHHHHHHHccccCCccEEEEcCeecccccc---cCCCCCcccHHHHHHHHHHHHHHHHhC--CcchhcccCChH
Q 023675 111 SGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN---RDLSFKAEDRVENIRRIGEVAKLFADA--GVICIACLISPY 185 (279)
Q Consensus 111 sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~---~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~~i~~~~~~~ 185 (279)
|||||||+++.|+..|+.+ ++|.|....... ....+.......++..-.++...+... .+++.+++....
T Consensus 1 ~GsGKStvg~~lA~~L~~~-----fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~ 75 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRP-----FIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLK 75 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSE-----EEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGS
T ss_pred CCCcHHHHHHHHHHHhCCC-----ccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCc
Confidence 6999999999999999877 999987632111 011111122222222222233322222 344444445555
Q ss_pred HHHHHHHHHhCCCCCccEEEEeCCccchhccChhh----HHH-HHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCH
Q 023675 186 RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG----LYK-LAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSP 260 (279)
Q Consensus 186 ~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~----l~~-~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~ 260 (279)
.+.++.++. ....|||+.+++.+.+|+... ++. ......+......|.++|... +++++++ +..++
T Consensus 76 ~~~~~~L~~-----~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~~R~~~Y~~~-a~~~v~~---~~~~~ 146 (158)
T PF01202_consen 76 EENRELLKE-----NGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLFEREPLYEQA-ADIVVDT---DGSPP 146 (158)
T ss_dssp HHHHHHHHH-----HSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHHHHHHHHHHH-SSEEEET---SSCHH
T ss_pred HHHHHHHHh-----CCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHHHHhc-CeEEEeC---CCCCH
Confidence 566666652 223499999999999987432 110 000000111222466666653 6788888 77777
Q ss_pred HHHHHHHHHHHH
Q 023675 261 ADMVETVVSYLD 272 (279)
Q Consensus 261 ~e~~~~Il~~l~ 272 (279)
++++++|++.|+
T Consensus 147 ~~i~~~i~~~l~ 158 (158)
T PF01202_consen 147 EEIAEEILEFLK 158 (158)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 411
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.2e-09 Score=102.34 Aligned_cols=137 Identities=21% Similarity=0.238 Sum_probs=80.5
Q ss_pred CCCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccE-EEEcCeeccccc---ccC-
Q 023675 79 STNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLT-YILDGDNCRHGL---NRD- 148 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~-i~ldgd~i~~~~---~~~- 148 (279)
..+|...+.++.|..+. ++++..|..++|||+||+|||||+++|+.-- -..-+. =-+.|+++.... ..+
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~-v~~f~veqE~~g~~t~~~~~~l~~D~ 156 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQ-VSGFHVEQEVRGDDTEALQSVLESDT 156 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcC-cCccCchhheeccchHHHhhhhhccH
Confidence 45788888888888644 9999999999999999999999999999821 000000 013344332110 000
Q ss_pred --CCCCcccHHHHHH-HHHHHHH-HHHhCCcch-----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 149 --LSFKAEDRVENIR-RIGEVAK-LFADAGVIC-----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 149 --~~~~~~~~~~~~~-~v~~~~~-~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
..|..++..-..+ ...++.. .+...|+.. .....|++=+.| ++||+++.+|++ ++||||++.|+-+..
T Consensus 157 ~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDl--LLLDEPTNhLDv~av 234 (582)
T KOG0062|consen 157 ERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDL--LLLDEPTNHLDVVAV 234 (582)
T ss_pred HHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCE--EeecCCcccchhHHH
Confidence 0011111000001 1122232 333334322 122344444444 999999999999 999999999987764
No 412
>COG0645 Predicted kinase [General function prediction only]
Probab=98.99 E-value=1.4e-09 Score=88.75 Aligned_cols=112 Identities=23% Similarity=0.279 Sum_probs=92.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc--------CCCCCcccHHHHHHHHHHHHHHHHhC
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR--------DLSFKAEDRVENIRRIGEVAKLFADA 173 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~ 173 (279)
+..+.+.|.+|+||||+++.|+..+ |.+.|..|.+++.+.. .-.|++......+..+...+.++...
T Consensus 1 ~~l~l~~Gl~GsGKstlA~~l~~~l-----gA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 1 GRLVLVGGLPGSGKSTLARGLAELL-----GAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred CeEEEEecCCCccHhHHHHHHHhhc-----CceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 3578899999999999999999988 4679999999888765 22366666667777778888888888
Q ss_pred CcchhcccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccCh
Q 023675 174 GVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 174 ~~~~i~~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~ 218 (279)
|..++.+.....+..|+.+++++... .|..+.++.|.+.+..|+.
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~ 122 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLA 122 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHH
Confidence 99999998888888898888888775 6767899999999999984
No 413
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.97 E-value=2e-09 Score=94.04 Aligned_cols=46 Identities=11% Similarity=0.034 Sum_probs=35.3
Q ss_pred cccCChHHHHH-HHHHHhC----CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 179 ACLISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 179 ~~~~~~~~~~r-~~ar~l~----~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+..+++++++| .++++++ ..|++ +++|||+..++....+.+++.+.
T Consensus 156 ~~~lS~G~~~r~~la~~l~~~~~~~~~i--lllDEp~~~ld~~~~~~~~~~l~ 206 (243)
T cd03272 156 MQQLSGGQKSLVALALIFAIQKCDPAPF--YLFDEIDAALDAQYRTAVANMIK 206 (243)
T ss_pred ccccCHHHHHHHHHHHHHHHhccCCCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence 34578888888 8888885 34677 99999999999988777665443
No 414
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.96 E-value=1.3e-08 Score=90.16 Aligned_cols=139 Identities=19% Similarity=0.254 Sum_probs=83.1
Q ss_pred EeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHH-----HHcccc----CC-----------ccEEEEcCeeccc
Q 023675 84 WHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL-----SQALHW----RG-----------KLTYILDGDNCRH 143 (279)
Q Consensus 84 ~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L-----~~~l~~----~~-----------~G~i~ldgd~i~~ 143 (279)
+++.+..-..+.++.++.|.+++++|+||||||||++.+ .+.+.. |+ .-.+++|..++..
T Consensus 3 ~~~~~~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~ 82 (261)
T cd03271 3 LKGARENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGR 82 (261)
T ss_pred eeccchhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCC
Confidence 344444445567889999999999999999999999865 222211 11 1246777777643
Q ss_pred ccccC---------------------CCCCc---------c-----------cHHHHHHH---HHHHHHHHHhCCcch--
Q 023675 144 GLNRD---------------------LSFKA---------E-----------DRVENIRR---IGEVAKLFADAGVIC-- 177 (279)
Q Consensus 144 ~~~~~---------------------~~~~~---------~-----------~~~~~~~~---v~~~~~~~~~~~~~~-- 177 (279)
..+.. ..|.+ . +..+++.. +.+....+...++..
T Consensus 83 ~~rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~ 162 (261)
T cd03271 83 TPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIK 162 (261)
T ss_pred CCCCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhh
Confidence 21110 01111 1 11111111 111222333334322
Q ss_pred ---hcccCChHHHHH-HHHHHhCCC---CCccEEEEeCCccchhccChhhHHHH
Q 023675 178 ---IACLISPYRKDR-DACRSMLPE---GDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 178 ---i~~~~~~~~~~r-~~ar~l~~~---~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
....+++++++| .++++++.+ |++ +++|||+..++......+.+.
T Consensus 163 l~~~~~~LSgGe~QRl~LAraL~~~~~~p~l--llLDEPtsgLD~~~~~~l~~~ 214 (261)
T cd03271 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTL--YILDEPTTGLHFHDVKKLLEV 214 (261)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCCCcE--EEEECCCCCCCHHHHHHHHHH
Confidence 234578888888 889999986 466 899999999998887765543
No 415
>PRK04182 cytidylate kinase; Provisional
Probab=98.96 E-value=2.2e-09 Score=89.09 Aligned_cols=151 Identities=18% Similarity=0.257 Sum_probs=81.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCCCCCcccHHHH-------HHHHHHHHHHHH-hCC
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDLSFKAEDRVEN-------IRRIGEVAKLFA-DAG 174 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~~~~~~~~~~~-------~~~v~~~~~~~~-~~~ 174 (279)
+|+|+|++||||||+++.|+..++.+ ++|.++ ++... ...++......+. ...+........ ..+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~-----~id~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLK-----HVSAGEIFRELA-KERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKED 75 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----EecHHHHHHHHH-HHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999988544 777433 22110 0111111111000 011111111111 222
Q ss_pred cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh----HHHH---------HhCCCCCCCccccCcCC
Q 023675 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG----LYKL---------AREGKVKGFTGIDDPYE 241 (279)
Q Consensus 175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~----l~~~---------~~~~~~~~~~~~r~~~~ 241 (279)
..++.+.... .+......+.|++++|.+.+.+|+..+ ..+. .+...+..+++.+.+.+
T Consensus 76 ~~Vi~g~~~~---------~~~~~~~~~~V~l~a~~e~~~~Rl~~r~~~~~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~ 146 (180)
T PRK04182 76 NVVLEGRLAG---------WMAKDYADLKIWLKAPLEVRAERIAEREGISVEEALEETIEREESEAKRYKEYYGIDIDDL 146 (180)
T ss_pred CEEEEEeecc---------eEecCCCCEEEEEECCHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCcccc
Confidence 2222111111 011111234589999999999987533 1111 01112334444444444
Q ss_pred CCCCCceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675 242 PPLNCEIVLKQMGDDCPSPADMVETVVSYLDEN 274 (279)
Q Consensus 242 ~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~ 274 (279)
. .++++|++ +..+++++++.|+.+++.+
T Consensus 147 ~--~~d~~idt---~~~~~~~~~~~I~~~~~~~ 174 (180)
T PRK04182 147 S--IYDLVINT---SRWDPEGVFDIILTAIDKL 174 (180)
T ss_pred c--cccEEEEC---CCCCHHHHHHHHHHHHHHH
Confidence 3 47899999 8899999999999988763
No 416
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.95 E-value=3.2e-10 Score=93.83 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=82.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc------cHHHHHHHHHHHHHHHHhCC-c
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE------DRVENIRRIGEVAKLFADAG-V 175 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~-~ 175 (279)
..++|+|++||||||+++.|+..++.+ ++|.|.+..... +.... ..........+....+.... +
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~-----~~d~D~~~~~~~---g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~~~v 74 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYR-----FVDTDQWLQSTS---NMTVAEIVEREGWAGFRARESAALEAVTAPSTV 74 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC-----EEEccHHHHHHh---CCCHHHHHHHHCHHHHHHHHHHHHHHhcCCCeE
Confidence 468999999999999999999998655 889887643211 11111 11111111112222222211 1
Q ss_pred chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHH----HhC----CCCCCCccccCcCCCCCCCc
Q 023675 176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL----ARE----GKVKGFTGIDDPYEPPLNCE 247 (279)
Q Consensus 176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~----~~~----~~~~~~~~~r~~~~~~~~a~ 247 (279)
+..+.........+.+++ ...+ .+||+.|.+.+.+|+..+-... ... .+...+...+.++|... ++
T Consensus 75 i~~ggg~vl~~~~~~~l~----~~~~-~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~~~r~~~y~~~-a~ 148 (171)
T PRK03731 75 IATGGGIILTEENRHFMR----NNGI-VIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVLAEREALYREV-AH 148 (171)
T ss_pred EECCCCccCCHHHHHHHH----hCCE-EEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHHHHHHHHHHHh-CC
Confidence 122222222334444333 2233 4899999999998875421000 000 01112233344555432 55
Q ss_pred eEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 248 IVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 248 ~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
++|++ + .++++++++|+..+.+
T Consensus 149 ~~Id~---~-~~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 149 HIIDA---T-QPPSQVVSEILSALAQ 170 (171)
T ss_pred EEEcC---C-CCHHHHHHHHHHHHhc
Confidence 77775 4 7899999999988764
No 417
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.89 E-value=3.2e-09 Score=95.11 Aligned_cols=142 Identities=20% Similarity=0.192 Sum_probs=82.1
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHh----CCc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFAD----AGV 175 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~ 175 (279)
.+.++++|+|++||||||+++.|.. .|...+|+.++. .+.+....+.. ..+
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~~------~g~~~~d~~~~~-------------------L~~~l~~~~~~~~~~~~~ 58 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALED------LGYYCVDNLPPS-------------------LLPKLVELLAQSGGIRKV 58 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHH------cCCeEECCcCHH-------------------HHHHHHHHHHhcCCCCCe
Confidence 4567999999999999999999963 245577765432 11122222222 122
Q ss_pred chhcccCCh--HHHHHHHHHHhCCC-CCccEEEEeCCccchhccChhh-----HHHHHhCCCCCCCcccc---CcCCCCC
Q 023675 176 ICIACLISP--YRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKG-----LYKLAREGKVKGFTGID---DPYEPPL 244 (279)
Q Consensus 176 ~~i~~~~~~--~~~~r~~ar~l~~~-~~~i~i~ld~p~~~l~~R~~~~-----l~~~~~~~~~~~~~~~r---~~~~~~~ 244 (279)
....+.... ....++....+... ..+..|||+++.+.+.+|+... +... ......+...+ .+++..
T Consensus 59 av~iD~r~~~~~~~~~~~~~~L~~~g~~~~iI~L~a~~e~L~~Rl~~~rr~RPLl~~--~~l~e~I~~eR~~l~pl~~~- 135 (288)
T PRK05416 59 AVVIDVRSRPFFDDLPEALDELRERGIDVRVLFLDASDEVLIRRYSETRRRHPLSGD--GSLLEGIELERELLAPLRER- 135 (288)
T ss_pred EEEEccCchhhHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHhhcccCCCccCC--ccHHHHHHHHHhhhhhHHHh-
Confidence 223333222 11222334443333 2344589999999999997521 1110 00011122223 334443
Q ss_pred CCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 245 NCEIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 245 ~a~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
++++||| +..++++++++|++.+..
T Consensus 136 -ADivIDT---s~ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 136 -ADLVIDT---SELSVHQLRERIRERFGG 160 (288)
T ss_pred -CCEEEEC---CCCCHHHHHHHHHHHHhc
Confidence 7899999 889999999999998854
No 418
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.88 E-value=4.6e-09 Score=90.24 Aligned_cols=139 Identities=15% Similarity=0.081 Sum_probs=74.1
Q ss_pred CeEEeecceeecCCc--ceecc-CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc--Ceecccc-cccCCCCCc-
Q 023675 81 NILWHKNSVDKRDRQ--QLLQQ-KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD--GDNCRHG-LNRDLSFKA- 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~--sl~i~-~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld--gd~i~~~-~~~~~~~~~- 153 (279)
.|+++|.. +|..+. +|... +|++++|+|+||||||||+++|+..+..+..+....+ .+.+... ....+.+..
T Consensus 5 ~i~l~nf~-~y~~~~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~ 83 (213)
T cd03279 5 KLELKNFG-PFREEQVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQ 83 (213)
T ss_pred EEEEECCc-CcCCceEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEE
Confidence 46777776 555444 44332 4789999999999999999999965422222222221 0111000 000001000
Q ss_pred -------------ccHHHHHHHHHHHHHH-HHhCCcchhcccCChHHHHH-HHHHHhCC----------CCCccEEEEeC
Q 023675 154 -------------EDRVENIRRIGEVAKL-FADAGVICIACLISPYRKDR-DACRSMLP----------EGDFIEVFMDV 208 (279)
Q Consensus 154 -------------~~~~~~~~~v~~~~~~-~~~~~~~~i~~~~~~~~~~r-~~ar~l~~----------~~~~i~i~ld~ 208 (279)
.+...+.+.+. .... +.. -....+..+++++++| .++++++. +|++ +++||
T Consensus 84 ~~~~~~~~~r~~gl~~~~~~~~~~-l~~g~l~~-~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~--lllDE 159 (213)
T cd03279 84 LGGKKYRVERSRGLDYDQFTRIVL-LPQGEFDR-FLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEA--LFIDE 159 (213)
T ss_pred ECCeEEEEEEecCCCHHHHHHhhh-hhhcchHH-HhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCE--EEEeC
Confidence 01111111110 0000 111 0112234577788887 88888864 3456 99999
Q ss_pred CccchhccChhhHHHH
Q 023675 209 PLQVCEARDPKGLYKL 224 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~ 224 (279)
|+..++......+.+.
T Consensus 160 p~~~lD~~~~~~~~~~ 175 (213)
T cd03279 160 GFGTLDPEALEAVATA 175 (213)
T ss_pred CcccCCHHHHHHHHHH
Confidence 9999998877665443
No 419
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.87 E-value=3.3e-09 Score=90.62 Aligned_cols=134 Identities=16% Similarity=0.141 Sum_probs=75.2
Q ss_pred eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHH----HccccCCccEEEEcCeeccccc-ccCCCCCcccH
Q 023675 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS----QALHWRGKLTYILDGDNCRHGL-NRDLSFKAEDR 156 (279)
Q Consensus 82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~----~~l~~~~~G~i~ldgd~i~~~~-~~~~~~~~~~~ 156 (279)
+.++|.. +|.+...+.+.+| +++|+|+||||||||+++|. |.. .++.+.+..+.+.+.... ...+.+..+..
T Consensus 4 l~l~nfr-~~~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~-~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~ 80 (204)
T cd03240 4 LSIRNIR-SFHERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGEL-PPNSKGGAHDPKLIREGEVRAQVKLAFENA 80 (204)
T ss_pred EEEECcc-cccCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCC-CcccccccchHHHHhCCCCcEEEEEEEEeC
Confidence 4555542 2234456777777 99999999999999999995 665 555554432222221110 00000000000
Q ss_pred ----------HHHHHHH-----HHHHHHHHhCCcchhcccCChHHHHH-------HHHHHhCCCCCccEEEEeCCccchh
Q 023675 157 ----------VENIRRI-----GEVAKLFADAGVICIACLISPYRKDR-------DACRSMLPEGDFIEVFMDVPLQVCE 214 (279)
Q Consensus 157 ----------~~~~~~v-----~~~~~~~~~~~~~~i~~~~~~~~~~r-------~~ar~l~~~~~~i~i~ld~p~~~l~ 214 (279)
...+..+ .++...+ ......++.+++++ .++++++.+|++ +++|||+..++
T Consensus 81 ~~~~~~v~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~LS~G~~~~~~la~rlala~al~~~p~i--lllDEP~~~LD 153 (204)
T cd03240 81 NGKKYTITRSLAILENVIFCHQGESNWPL-----LDMRGRCSGGEKVLASLIIRLALAETFGSNCGI--LALDEPTTNLD 153 (204)
T ss_pred CCCEEEEEEEhhHhhceeeechHHHHHHH-----hcCccccCccHHHHHHHHHHHHHHHHhccCCCE--EEEcCCccccC
Confidence 0111110 0011111 11233566777774 577888899888 99999999999
Q ss_pred ccChh-hHHHHH
Q 023675 215 ARDPK-GLYKLA 225 (279)
Q Consensus 215 ~R~~~-~l~~~~ 225 (279)
..... .+.+.+
T Consensus 154 ~~~~~~~l~~~l 165 (204)
T cd03240 154 EENIEESLAEII 165 (204)
T ss_pred HHHHHHHHHHHH
Confidence 88777 655543
No 420
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.84 E-value=6.4e-09 Score=85.45 Aligned_cols=45 Identities=22% Similarity=0.322 Sum_probs=41.9
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
|..+..|+++=+|||||||||||+..++|++ |++|+|.++|.++.
T Consensus 19 S~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G~~l~ 63 (248)
T COG4138 19 SGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPLE 63 (248)
T ss_pred ccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECCcchh
Confidence 6788899999999999999999999999985 78999999999985
No 421
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.83 E-value=2.3e-09 Score=85.64 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=69.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc----ccHHHHHHHHHHHHHHHHhCCcchhc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA----EDRVENIRRIGEVAKLFADAGVICIA 179 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~~i~ 179 (279)
+|.++|++||||||+++.|.+.+. ...++.|.++..+........ .........+..........|...++
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vv 75 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVV 75 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCcee
Confidence 588999999999999999998873 568999888654433211111 11112222333333333455666666
Q ss_pred ccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccChhh
Q 023675 180 CLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 180 ~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~ 220 (279)
+........|+....++... ++..+++++|.+.+.+|+..+
T Consensus 76 d~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R 118 (143)
T PF13671_consen 76 DNTNLSREERARLRELARKHGYPVRVVYLDAPEETLRERLAQR 118 (143)
T ss_dssp ESS--SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHHHTT
T ss_pred ccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHHHhc
Confidence 66555556666666555422 455689999999999987433
No 422
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.81 E-value=3.1e-08 Score=94.05 Aligned_cols=143 Identities=20% Similarity=0.224 Sum_probs=97.5
Q ss_pred CeEEeecceee-cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcc
Q 023675 81 NILWHKNSVDK-RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAE 154 (279)
Q Consensus 81 ~i~~~~~~~~~-~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~ 154 (279)
.+++++++..- ..+.||++.+||+++|.|..|||+|-++++|.|.. .+.+|+|.+||.++... +...++|.++
T Consensus 263 ~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~-~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~E 341 (500)
T COG1129 263 VLEVRNLSGGGKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR-PASSGEILLDGKPVRIRSPRDAIKAGIAYVPE 341 (500)
T ss_pred EEEEecCCCCCceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC-cCCCceEEECCEEccCCCHHHHHHcCCEeCCc
Confidence 35677776542 45679999999999999999999999999999966 78899999999987421 2223344444
Q ss_pred cHH--------------------H-----HHH--HHHHHHH-HHHh-----CCcchhcccCChHHHHH-HHHHHhCCCCC
Q 023675 155 DRV--------------------E-----NIR--RIGEVAK-LFAD-----AGVICIACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 155 ~~~--------------------~-----~~~--~v~~~~~-~~~~-----~~~~~i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
++. . ++. ...+.+. .... .+....+..+|++.+|+ -++|-+..+|+
T Consensus 342 DRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~ 421 (500)
T COG1129 342 DRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPK 421 (500)
T ss_pred ccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCC
Confidence 331 0 000 0011111 1111 11222445677777777 78888999998
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ ++||+|+-.++--.+..+|+.++
T Consensus 422 v--LilDEPTRGIDVGAK~eIy~li~ 445 (500)
T COG1129 422 V--LILDEPTRGIDVGAKAEIYRLIR 445 (500)
T ss_pred E--EEECCCCcCcccchHHHHHHHHH
Confidence 8 99999999998888887776443
No 423
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.81 E-value=8.3e-09 Score=90.82 Aligned_cols=46 Identities=4% Similarity=0.016 Sum_probs=35.3
Q ss_pred cccCChHHHHH-HHHHHhC----CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 179 ACLISPYRKDR-DACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 179 ~~~~~~~~~~r-~~ar~l~----~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
...+++++++| .++++++ ..+++ +++|||+..++......+++.++
T Consensus 164 ~~~lS~G~~qr~~la~al~~~~~~~~~i--lllDEPt~~ld~~~~~~~~~~l~ 214 (251)
T cd03273 164 LTELSGGQRSLVALSLILALLLFKPAPM--YILDEVDAALDLSHTQNIGRMIK 214 (251)
T ss_pred ccccCHHHHHHHHHHHHHHHhhccCCCE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence 34578888888 8888775 45677 99999999999888777665444
No 424
>PRK03839 putative kinase; Provisional
Probab=98.80 E-value=9.4e-09 Score=85.79 Aligned_cols=148 Identities=16% Similarity=0.160 Sum_probs=75.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCC
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~ 183 (279)
.|+|+|+|||||||+++.|++.+..+ ++|.+++.........+... ....++.+........ .+...+.++..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~-----~id~d~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~vIidG~~ 74 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYE-----YVDLTEFALKKGIGEEKDDE-MEIDFDKLAYFIEEEF-KEKNVVLDGHL 74 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhhhhhhcCCcccCChh-hhcCHHHHHHHHHHhc-cCCCEEEEecc
Confidence 58999999999999999999998544 67766552111100011111 1111122211111111 11112222210
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHH--HHh---CCCCCCCccccCcCCCCCCCceEEEccCCCCC
Q 023675 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK--LAR---EGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCP 258 (279)
Q Consensus 184 ~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~--~~~---~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~ 258 (279)
..+..++++ ++++++.+.+.+|+.++-.. ... ..++..+. ....|+.. .+.++|++ +..
T Consensus 75 ----------~~l~~~~~v-i~L~~~~~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~-~~~~~~~r-~~~~~Id~---~~~ 138 (180)
T PRK03839 75 ----------SHLLPVDYV-IVLRAHPKIIKERLKERGYSKKKILENVEAELVDVC-LCEALEEK-EKVIEVDT---TGK 138 (180)
T ss_pred ----------ccccCCCEE-EEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHHHhc-CCEEEEEC---CCC
Confidence 012234554 89999999999987533100 000 00000000 00112222 24467776 667
Q ss_pred CHHHHHHHHHHHHHhC
Q 023675 259 SPADMVETVVSYLDEN 274 (279)
Q Consensus 259 ~~~e~~~~Il~~l~~~ 274 (279)
++++++++|++.++..
T Consensus 139 s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 139 TPEEVVEEILELIKSG 154 (180)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998753
No 425
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.80 E-value=6.1e-09 Score=79.44 Aligned_cols=43 Identities=33% Similarity=0.231 Sum_probs=38.2
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+..+|.+++|++++|+|+||||||||++++. +|.+.++|+++.
T Consensus 6 ~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~ 48 (107)
T cd00820 6 HGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNV 48 (107)
T ss_pred EeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHH
Confidence 4557899999999999999999999999986 678999999884
No 426
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.79 E-value=1.2e-08 Score=91.85 Aligned_cols=115 Identities=23% Similarity=0.225 Sum_probs=69.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccC-----CCCCcccHHHHHHHHHHHHHHHHhCCcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-----LSFKAEDRVENIRRIGEVAKLFADAGVI 176 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 176 (279)
..+++++|++||||||+++.|+..+ . +.++++.|.++..+... ..+..+..........+.+......+..
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~-~---~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ 77 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKN-P---KAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKS 77 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHC-C---CCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCe
Confidence 3678999999999999999999988 2 46789998886543221 1122111111111112222222234555
Q ss_pred hhcccCChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhh
Q 023675 177 CIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 177 ~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
++++.......++.....+++. ..+..+++++|.+.+.+|..++
T Consensus 78 vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~~R 123 (300)
T PHA02530 78 VIISDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNRKR 123 (300)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHcc
Confidence 6666555555566555554432 3455689999999999998654
No 427
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.78 E-value=6.5e-08 Score=91.28 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=95.9
Q ss_pred CCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec------cc----
Q 023675 80 TNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC------RH---- 143 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i------~~---- 143 (279)
..|.++|+.+--+... +|.+.+|..+.|+||||||||+|.++|.|++ +...|...+=..+. +.
T Consensus 480 ~gI~lenIpvItP~~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW-Pvy~g~L~~P~~~~mFYIPQRPYms~ 558 (728)
T KOG0064|consen 480 NGIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW-PVYNGLLSIPRPNNIFYIPQRPYMSG 558 (728)
T ss_pred cceEEecCceeccCcceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC-cccCCeeecCCCcceEeccCCCccCc
Confidence 4478888876665433 8999999999999999999999999999986 33333332211110 00
Q ss_pred -ccccC------------CCCCcccHHHHHHHHHHHHHHHHhCC-cchh---cccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 144 -GLNRD------------LSFKAEDRVENIRRIGEVAKLFADAG-VICI---ACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 144 -~~~~~------------~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~i---~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
.++.+ -++.++++...+..+ .+..+.+..+ ..++ -+-++++++|| ..||-....|++ .+
T Consensus 559 gtlRDQIIYPdS~e~~~~kg~~d~dL~~iL~~v-~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPky--al 635 (728)
T KOG0064|consen 559 GTLRDQIIYPDSSEQMKRKGYTDQDLEAILDIV-HLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKY--AL 635 (728)
T ss_pred CcccceeecCCcHHHHHhcCCCHHHHHHHHHHh-hHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcch--hh
Confidence 01111 134444443333322 2333444333 3222 23478889998 888988899988 89
Q ss_pred EeCCccchhccChhhHHHHHhCCCC
Q 023675 206 MDVPLQVCEARDPKGLYKLAREGKV 230 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~~~~~~~~ 230 (279)
|||-++.+.-.....+++.++...+
T Consensus 636 LDEcTsAvsidvE~~i~~~ak~~gi 660 (728)
T KOG0064|consen 636 LDECTSAVSIDVEGKIFQAAKDAGI 660 (728)
T ss_pred hhhhhcccccchHHHHHHHHHhcCc
Confidence 9999999888888888887776543
No 428
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.77 E-value=1.3e-09 Score=88.25 Aligned_cols=140 Identities=20% Similarity=0.230 Sum_probs=71.7
Q ss_pred EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc------HHHHHHHHHHHHHHHHhCCcchh
Q 023675 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED------RVENIRRIGEVAKLFADAGVICI 178 (279)
Q Consensus 105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~~~i 178 (279)
|+|+|++||||||+++.|+..+..+ +++.|.+..... +....+ ...+..........+...+..++
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~-----~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi 73 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP-----FVDLDELIEQRA---GMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVI 73 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC-----EEEchHHHHHHc---CCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEE
Confidence 7899999999999999999998655 788887643221 111111 11112221222222223222222
Q ss_pred ccc--CChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHH-HHhCC---CCCCCccccCcCCCCCCCceEEEc
Q 023675 179 ACL--ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAREG---KVKGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 179 ~~~--~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~-~~~~~---~~~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
..+ .......+. .+.. ..+.||+++|.+.+.+|+.++.-. ..... .+..+...+.++|... +++++++
T Consensus 74 ~~g~~~i~~~~~~~----~~~~-~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~~~~~~r~~~Y~~~-ad~~i~~ 147 (154)
T cd00464 74 ATGGGAVLREENRR----LLLE-NGIVVWLDASPEELLERLARDKTRPLLQDEDPERLRELLEEREPLYREV-ADLTIDT 147 (154)
T ss_pred ECCCCccCcHHHHH----HHHc-CCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHHHHHHHh-CcEEEEC
Confidence 211 112222222 2222 235599999999998887432100 00000 1222233345555432 7899998
Q ss_pred cCCCCCCHH
Q 023675 253 MGDDCPSPA 261 (279)
Q Consensus 253 ~~~~~~~~~ 261 (279)
++.+++
T Consensus 148 ---~~~~~~ 153 (154)
T cd00464 148 ---DELSPE 153 (154)
T ss_pred ---CCCCCC
Confidence 666654
No 429
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3e-08 Score=91.69 Aligned_cols=137 Identities=19% Similarity=0.139 Sum_probs=86.5
Q ss_pred CCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc
Q 023675 80 TNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~ 153 (279)
..+-+++|+|.|+... +|-+.--..|+||||||.|||||+++|.|.+ .|..|...-+-. ++ +++-.
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl-~P~~GE~RKnhr-L~------iG~Fd 656 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKL-DPNDGELRKNHR-LR------IGWFD 656 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCC-CCCcchhhccce-ee------eechh
Confidence 3467899999996533 6777788899999999999999999999999 898887643321 21 11111
Q ss_pred ccH----------HHHHHHH----HHHHH-HHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 154 EDR----------VENIRRI----GEVAK-LFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 154 ~~~----------~~~~~~v----~~~~~-~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
+.. .+++.+. .+-+. .+..+|+. .-+..++++++.| ..+.-.+..|++ ++||+|+..
T Consensus 657 Qh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDv--lILDEPTNN 734 (807)
T KOG0066|consen 657 QHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDV--LILDEPTNN 734 (807)
T ss_pred hhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCE--EEecCCCCC
Confidence 110 1111110 00010 11112221 1234578888888 666666777888 999999999
Q ss_pred hhccChhhHHHHHh
Q 023675 213 CEARDPKGLYKLAR 226 (279)
Q Consensus 213 l~~R~~~~l~~~~~ 226 (279)
++-..-..|...+.
T Consensus 735 LDIESIDALaEAIn 748 (807)
T KOG0066|consen 735 LDIESIDALAEAIN 748 (807)
T ss_pred cchhhHHHHHHHHH
Confidence 87765555555444
No 430
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.73 E-value=4.8e-08 Score=92.34 Aligned_cols=52 Identities=23% Similarity=0.168 Sum_probs=44.4
Q ss_pred cCCCCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccC
Q 023675 77 AKSTNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWR 129 (279)
Q Consensus 77 ~~~~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~ 129 (279)
+.+..+.+.+++++|... ..|.+.+|+.++|+|+|||||||+++++.+.. .|
T Consensus 71 ~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e-~P 127 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGRE-VP 127 (614)
T ss_pred cccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCC-CC
Confidence 445678888888888643 38999999999999999999999999999987 44
No 431
>PRK08233 hypothetical protein; Provisional
Probab=98.72 E-value=9.2e-08 Score=79.47 Aligned_cols=162 Identities=22% Similarity=0.298 Sum_probs=81.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc-------cccccCCCCCcccHHHHHHHHHHHHHHHHhC
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR-------HGLNRDLSFKAEDRVENIRRIGEVAKLFADA 173 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~-------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 173 (279)
++.+|+|.|++||||||+++.|+..+. ....+.+|..... ........+......... .++.......
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~ 76 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK--NSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLI---KDIQELIAKS 76 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC--CCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHH---HHHHHHHcCC
Confidence 467999999999999999999999883 2345666665431 111111112111111111 1122222222
Q ss_pred Ccc-hhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCC----CCCccccCc-CCC-----
Q 023675 174 GVI-CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV----KGFTGIDDP-YEP----- 242 (279)
Q Consensus 174 ~~~-~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~----~~~~~~r~~-~~~----- 242 (279)
+.. .+..+... ...+..+..+ ++ .|+++.|.+.+..|..++-........+ ..+.....+ |+.
T Consensus 77 ~~~~vivd~~~~--~~~~~~~~~~---d~-~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 150 (182)
T PRK08233 77 NVDYIIVDYPFA--YLNSEMRQFI---DV-TIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTV 150 (182)
T ss_pred CceEEEEeeehh--hccHHHHHHc---CE-EEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhhcC
Confidence 111 12222111 1111122222 33 4899999999877754332111111111 112111111 211
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCc
Q 023675 243 PLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL 277 (279)
Q Consensus 243 ~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~ 277 (279)
+..++++|+. ..+++++.++|...|..+.++
T Consensus 151 ~~~~~~vId~----~~~~e~i~~~i~~~l~~~~~~ 181 (182)
T PRK08233 151 KPNADIVLDG----ALSVEEIINQIEEELYRREVI 181 (182)
T ss_pred ccCCeEEEcC----CCCHHHHHHHHHHHHHhCCcc
Confidence 1135566654 578999999999999887654
No 432
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.69 E-value=3.2e-08 Score=93.34 Aligned_cols=48 Identities=17% Similarity=0.210 Sum_probs=41.5
Q ss_pred cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc-EEEEcCeecc
Q 023675 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-TYILDGDNCR 142 (279)
Q Consensus 92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G-~i~ldgd~i~ 142 (279)
.++.++++++|++++|+|+||||||||++ .+.+ .|.+| .|++||.++.
T Consensus 22 L~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~-~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 22 LVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKR-KFSEGYEFFLDATHSF 70 (504)
T ss_pred HhCCceeecCCCEEEEECCCCCCHHHHHh--cCCC-CCCCCCEEEECCEECC
Confidence 35668999999999999999999999999 5666 56666 7999999885
No 433
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.66 E-value=6.4e-08 Score=82.03 Aligned_cols=72 Identities=17% Similarity=0.310 Sum_probs=45.4
Q ss_pred CCCCccEEEEeCCccchhccChhh------------HHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKG------------LYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMV 264 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~------------l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~ 264 (279)
.++++ -+||+.+.+...+|--+. +++.+.+.+.......-.|+.+.. .-+.||| +.++++|++
T Consensus 136 PdA~l-KiFLtAS~e~RA~RR~~q~~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~-DA~~iDT---s~msieeVv 210 (222)
T COG0283 136 PDAEL-KIFLTASPEERAERRYKQLQAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAE-DALLLDT---SSLSIEEVV 210 (222)
T ss_pred CCCCe-EEEEeCCHHHHHHHHHHHHHhccCcchHHHHHHHHHHhhhccccCcCCCCcCCC-CeEEEEC---CCCcHHHHH
Confidence 33344 478999988877764322 222222333333344445565543 2378888 999999999
Q ss_pred HHHHHHHHh
Q 023675 265 ETVVSYLDE 273 (279)
Q Consensus 265 ~~Il~~l~~ 273 (279)
++|+.++++
T Consensus 211 ~~il~~~~~ 219 (222)
T COG0283 211 EKILELIRQ 219 (222)
T ss_pred HHHHHHHHH
Confidence 999998874
No 434
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.66 E-value=1.7e-07 Score=80.88 Aligned_cols=25 Identities=48% Similarity=0.612 Sum_probs=22.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
.+++|.||+||||||+++.|++.++
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998774
No 435
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.64 E-value=9.2e-08 Score=88.95 Aligned_cols=121 Identities=17% Similarity=0.175 Sum_probs=74.4
Q ss_pred eEEeecceeecCCcce-----eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc--
Q 023675 82 ILWHKNSVDKRDRQQL-----LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-- 154 (279)
Q Consensus 82 i~~~~~~~~~~~~~sl-----~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-- 154 (279)
++|.+...+|.+ -.| .+..||+++++||||-||||++++|+|.+ .|++|. ..+++- +|.++
T Consensus 343 v~y~~~~k~~g~-F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg~----~~~~~v------SyKPQyI 410 (591)
T COG1245 343 VEYPDLKKTYGD-FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEGS----EEDLKV------SYKPQYI 410 (591)
T ss_pred eecchheeecCc-eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccc-cCCCCC----CccceE------eecceee
Confidence 455555555542 122 45678999999999999999999999999 898886 222221 12221
Q ss_pred -----cH-HHHHHHHHHH--------HHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhc
Q 023675 155 -----DR-VENIRRIGEV--------AKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEA 215 (279)
Q Consensus 155 -----~~-~~~~~~v~~~--------~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~ 215 (279)
.. ...+...... ..++....+. ..+..+|+++-|| +++.++.+++++ -+||||.+.|+-
T Consensus 411 ~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl--YllDEPSA~LDv 488 (591)
T COG1245 411 SPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL--YLLDEPSAYLDV 488 (591)
T ss_pred cCCCCCcHHHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE--EEecCchhhccH
Confidence 00 1111110000 0001111111 1345688899888 888899998888 899999998865
Q ss_pred c
Q 023675 216 R 216 (279)
Q Consensus 216 R 216 (279)
-
T Consensus 489 E 489 (591)
T COG1245 489 E 489 (591)
T ss_pred H
Confidence 3
No 436
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.62 E-value=3.4e-07 Score=80.39 Aligned_cols=50 Identities=24% Similarity=0.181 Sum_probs=34.9
Q ss_pred eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE
Q 023675 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY 134 (279)
Q Consensus 82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i 134 (279)
++++|. -+|....++...++ +++|+|+||||||||+.+|...+ .+..|.+
T Consensus 4 i~l~nf-~~~~~~~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l-~~~~~~~ 53 (247)
T cd03275 4 LELENF-KSYKGRHVIGPFDR-FTCIIGPNGSGKSNLMDAISFVL-GEKSSHL 53 (247)
T ss_pred EEEECc-cccCCCeeecCCCC-eEEEECCCCCCHHHHHHHHHHHh-CCCcccc
Confidence 556664 24544444544444 99999999999999999999988 4433433
No 437
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.60 E-value=1.3e-07 Score=77.67 Aligned_cols=148 Identities=18% Similarity=0.225 Sum_probs=74.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH-------HHHHHHHHHHHHHH-hCCc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV-------ENIRRIGEVAKLFA-DAGV 175 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~-------~~~~~v~~~~~~~~-~~~~ 175 (279)
+|+|.|++||||||+++.|+..++.+ +++.+++...+....+....... .....+......+. ..+.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLK-----LISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKN 76 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----eecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCC
Confidence 68999999999999999999988544 77765542221111122211100 00111111111111 2122
Q ss_pred chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhH-------HHHHh------CCCCCCCccccCcCCC
Q 023675 176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL-------YKLAR------EGKVKGFTGIDDPYEP 242 (279)
Q Consensus 176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l-------~~~~~------~~~~~~~~~~r~~~~~ 242 (279)
. ++.+.... .. +-..+++ .|++++|.+.+.+|..++- .+... ...+..+++ ..+..
T Consensus 77 ~-Vi~g~~~~-----~~--~~~~~d~-~v~v~a~~~~r~~R~~~R~~~s~~~a~~~~~~~d~~~~~~~~~~~~--~~~~~ 145 (171)
T TIGR02173 77 V-VLESRLAG-----WI--VREYADV-KIWLKAPLEVRARRIAKREGKSLTVARSETIEREESEKRRYLKFYG--IDIDD 145 (171)
T ss_pred E-EEEecccc-----ee--ecCCcCE-EEEEECCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHhC--CCccc
Confidence 2 22221110 00 0111243 4899999999988875430 00000 001111111 11222
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHHHHH
Q 023675 243 PLNCEIVLKQMGDDCPSPADMVETVVSYL 271 (279)
Q Consensus 243 ~~~a~~~i~~~~~~~~~~~e~~~~Il~~l 271 (279)
+..-|++|+| +..++++ ++.|..++
T Consensus 146 ~~~ydl~i~t---~~~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 146 LSIYDLVINT---SNWDPNN-VDIILDAL 170 (171)
T ss_pred cccccEEEEC---CCCCHHH-HHHHHHHh
Confidence 3345699999 9999999 99998765
No 438
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.60 E-value=3.4e-07 Score=77.80 Aligned_cols=28 Identities=43% Similarity=0.561 Sum_probs=26.3
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
++|++++|+|+||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999873
No 439
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.60 E-value=1.9e-07 Score=85.99 Aligned_cols=128 Identities=16% Similarity=0.177 Sum_probs=78.6
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc-------cCCccEEEEcCeecccccccCCC--CCcccHHHHHHH-
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH-------WRGKLTYILDGDNCRHGLNRDLS--FKAEDRVENIRR- 162 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-------~~~~G~i~ldgd~i~~~~~~~~~--~~~~~~~~~~~~- 162 (279)
++.+|.+++|++++++|.|||||||++++|+|... .|++|.|.+--+.+...+.+.+. |......+++..
T Consensus 400 r~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~ 479 (593)
T COG2401 400 RNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSK 479 (593)
T ss_pred eceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhc
Confidence 34599999999999999999999999999999853 56777776655444322222221 221122222211
Q ss_pred ---HHHHHHHHHhCCcchh------cccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 163 ---IGEVAKLFADAGVICI------ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 163 ---v~~~~~~~~~~~~~~i------~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
+.....++...|+..- ..-++.+++.| .+|+.+...|++ ++.|+-.+.+++-...++.
T Consensus 480 tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~--~~iDEF~AhLD~~TA~rVA 547 (593)
T COG2401 480 TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNV--LLIDEFAAHLDELTAVRVA 547 (593)
T ss_pred cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCc--EEhhhhhhhcCHHHHHHHH
Confidence 1112233444444332 12366777777 777888888777 7778877777665544433
No 440
>PRK14532 adenylate kinase; Provisional
Probab=98.57 E-value=8.9e-08 Score=80.40 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=27.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++|+|++||||||+++.|+..++ ..+++.+++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g-----~~~is~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG-----MVQLSTGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC-----CeEEeCcHH
Confidence 378999999999999999999884 447886554
No 441
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.57 E-value=2e-07 Score=77.88 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
..+++|+|++||||||+++.|+..++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999997763
No 442
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.57 E-value=2e-07 Score=75.49 Aligned_cols=149 Identities=23% Similarity=0.354 Sum_probs=80.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-CeecccccccCCCCCcccHHHHHH-------HHHHHHHHHHhCCc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLNRDLSFKAEDRVENIR-------RIGEVAKLFADAGV 175 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~i~~~~~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~~ 175 (279)
+|.+-|++||||||+++.|+..|.-+ ++. |+-.+ .+-.+.+++..+..+.-+ .+......+...+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~-----~vsaG~iFR-~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~~~n 75 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK-----LVSAGTIFR-EMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAKEGN 75 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc-----eeeccHHHH-HHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHHcCC
Confidence 57899999999999999999999654 444 33222 111222444433321100 01111111222233
Q ss_pred chhcccCChHHHHHHHHHHhC-CCCCccEEEEeCCccchhccChhh----HH---HHH--h----CCCCCCCccccCcCC
Q 023675 176 ICIACLISPYRKDRDACRSML-PEGDFIEVFMDVPLQVCEARDPKG----LY---KLA--R----EGKVKGFTGIDDPYE 241 (279)
Q Consensus 176 ~~i~~~~~~~~~~r~~ar~l~-~~~~~i~i~ld~p~~~l~~R~~~~----l~---~~~--~----~~~~~~~~~~r~~~~ 241 (279)
.++-.-+.+ -++ ..+++ -|||.+|++...+|..++ +- +.. + ..++..+++++-.=.
T Consensus 76 vVlegrLA~---------Wi~k~~adl-kI~L~Apl~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~~YgIDidDl 145 (179)
T COG1102 76 VVLEGRLAG---------WIVREYADL-KIWLKAPLEVRAERIAKREGIDVDEALAETVEREESEKKRYKKIYGIDIDDL 145 (179)
T ss_pred eEEhhhhHH---------HHhccccce-EEEEeCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCccc
Confidence 332221211 111 22344 499999999999998654 11 110 1 122334555543322
Q ss_pred CCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 242 PPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 242 ~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
. -.|++|+| +..+++++...|...+..
T Consensus 146 S--iyDLVinT---s~~~~~~v~~il~~aid~ 172 (179)
T COG1102 146 S--IYDLVINT---SKWDPEEVFLILLDAIDA 172 (179)
T ss_pred e--eeEEEEec---ccCCHHHHHHHHHHHHHh
Confidence 2 25689999 899998888777776654
No 443
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.55 E-value=3.1e-08 Score=95.08 Aligned_cols=147 Identities=17% Similarity=0.209 Sum_probs=82.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHH-HHHHHHHHHhCC--c
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRR-IGEVAKLFADAG--V 175 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~-v~~~~~~~~~~~--~ 175 (279)
.++|+|++||||||+++.|++.+..+ ++|.|.+.+... +.+..+. ..+++. -.+....+.... +
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~-----~id~D~~i~~~~---g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~V 73 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQ-----FIDMDEEIERRE---GRSVRRIFEEDGEEYFRLKEKELLRELVERDNVV 73 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCe-----EEECcHHHHHHc---CCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEE
Confidence 48999999999999999999988554 889887643221 2111111 111111 111111121211 2
Q ss_pred chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh---HHHHHhCCCCCCCccccCcCCCCCCCceEEEc
Q 023675 176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG---LYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~---l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
+..+........+|+.++. .. .+||+.|.+.+.+|+..+ +.... ..++..++..|.++|... .+||+
T Consensus 74 is~Gggvv~~~~~r~~l~~----~~--vI~L~as~e~l~~Rl~~~~RPLl~~~-~e~l~~L~~~R~~lY~~~---~~IDt 143 (488)
T PRK13951 74 VATGGGVVIDPENRELLKK----EK--TLFLYAPPEVLMERVTTENRPLLREG-KERIREIWERRKQFYTEF---RGIDT 143 (488)
T ss_pred EECCCccccChHHHHHHhc----Ce--EEEEECCHHHHHHHhccCCCCCcccc-HHHHHHHHHHHHHHHhcc---cEEEC
Confidence 2222222233445554442 22 389999999999998532 11100 012333455577777642 47888
Q ss_pred cCCCCCCHHHHHHHHH-HHH
Q 023675 253 MGDDCPSPADMVETVV-SYL 271 (279)
Q Consensus 253 ~~~~~~~~~e~~~~Il-~~l 271 (279)
+..++++.+++|+ ++|
T Consensus 144 ---~~~s~~e~~~~iv~~~~ 160 (488)
T PRK13951 144 ---SKLNEWETTALVVLEAL 160 (488)
T ss_pred ---CCCCHHHHHHHHHHHhh
Confidence 7788888777765 444
No 444
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.54 E-value=1.2e-06 Score=88.15 Aligned_cols=71 Identities=7% Similarity=0.099 Sum_probs=43.0
Q ss_pred CCCCccEEEEeCCccchhccChhhH--------HHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGL--------YKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVV 268 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l--------~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il 268 (279)
.++++ -+||+++.+..++|-.+++ ++.+...+..+. ..-.|+.... .-+.||+ +.++++++++.|+
T Consensus 153 p~a~~-K~~l~A~~~~Ra~Rr~~~~~~~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~-da~~idt---s~~~~~~v~~~i~ 226 (712)
T PRK09518 153 PDAEV-RILLTAREEVRQARRSGQDRSETPGVVLEDVAARDEADS-KVTSFLSAAD-GVTTLDN---SDLDFDETLDLLI 226 (712)
T ss_pred cCCCe-EEEEECCHHHHHHHHHHhhhcCCHHHHHHHHHHHhhhcc-cccCCCCCCC-CeEEEEC---CCCCHHHHHHHHH
Confidence 33444 4899999998888764432 122222222222 2223333321 2288999 9999999999999
Q ss_pred HHHHh
Q 023675 269 SYLDE 273 (279)
Q Consensus 269 ~~l~~ 273 (279)
..+++
T Consensus 227 ~~i~~ 231 (712)
T PRK09518 227 GLVED 231 (712)
T ss_pred HHHHh
Confidence 88764
No 445
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.53 E-value=9.4e-08 Score=92.10 Aligned_cols=102 Identities=14% Similarity=0.090 Sum_probs=72.6
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcch
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVIC 177 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 177 (279)
.-.+++++.++|++||||||+++.+...+ |.++++-|.+. . +......+......|..+
T Consensus 365 ~~~~p~LVil~G~pGSGKST~A~~l~~~~-----g~~~vn~D~lg---------------~-~~~~~~~a~~~L~~G~sV 423 (526)
T TIGR01663 365 DDAPCEMVIAVGFPGAGKSHFCKKFFQPA-----GYKHVNADTLG---------------S-TQNCLTACERALDQGKRC 423 (526)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHc-----CCeEECcHHHH---------------H-HHHHHHHHHHHHhCCCcE
Confidence 44678999999999999999999988754 45678877653 0 111222233334567778
Q ss_pred hcccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccChhh
Q 023675 178 IACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 178 i~~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~ 220 (279)
+++........|....++++.. ++..++++.|.+.+.+|+..+
T Consensus 424 VIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 424 AIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFR 468 (526)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhh
Confidence 8888877777776666665543 556689999999999988655
No 446
>PRK14527 adenylate kinase; Provisional
Probab=98.52 E-value=2.8e-07 Score=77.69 Aligned_cols=29 Identities=41% Similarity=0.468 Sum_probs=26.2
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
..+|.+++++|++||||||+++.|+..+.
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45789999999999999999999998774
No 447
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=98.52 E-value=1.3e-07 Score=80.45 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.5
Q ss_pred cceeccCC-eEEEEEcCCCChHHHHHHHHH
Q 023675 95 QQLLQQKG-CVIWITGLSGSGKSTLACALS 123 (279)
Q Consensus 95 ~sl~i~~g-~~i~lvG~sGsGKSTl~~~L~ 123 (279)
.++++.+| ++++|+|||||||||+++.|.
T Consensus 20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence 37888898 589999999999999999998
No 448
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.52 E-value=1.3e-06 Score=74.26 Aligned_cols=122 Identities=19% Similarity=0.180 Sum_probs=65.8
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe---e-cccc-----cc---cCCCCCcccH-HHHHH
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD---N-CRHG-----LN---RDLSFKAEDR-VENIR 161 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd---~-i~~~-----~~---~~~~~~~~~~-~~~~~ 161 (279)
..+.+.+| +.+|+|+||||||||+.+|.-.+. .... ....+. + ++.+ +. ..-+...... .....
T Consensus 15 ~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~-~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 91 (198)
T cd03276 15 LQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG-GKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQD 91 (198)
T ss_pred eEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc-CCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHH
Confidence 45566665 778999999999999999986542 1110 001111 1 0100 00 0001111000 00001
Q ss_pred HHHHHHHHHHhC-CcchhcccCChHHHHH-HHHHHh----CCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 162 RIGEVAKLFADA-GVICIACLISPYRKDR-DACRSM----LPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 162 ~v~~~~~~~~~~-~~~~i~~~~~~~~~~r-~~ar~l----~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
. +..++... ........++.+++++ .+++++ +.+|++ +++|||+..++......+.+.
T Consensus 92 ~---~~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~i--lllDEP~~glD~~~~~~~~~~ 155 (198)
T cd03276 92 M---ARSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPF--RCLDEFDVFMDMVNRKISTDL 155 (198)
T ss_pred H---HHHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCE--EEecCcccccCHHHHHHHHHH
Confidence 1 11111111 1222345677888887 777777 578888 999999999998876665543
No 449
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.50 E-value=1.6e-07 Score=78.31 Aligned_cols=110 Identities=18% Similarity=0.171 Sum_probs=57.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eecccccccCCCCCcccHHHHH--------HHHHHH-HHHHHhC
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDLSFKAEDRVENI--------RRIGEV-AKLFADA 173 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~~~~~~~~~~~~~~~~~~~--------~~v~~~-~~~~~~~ 173 (279)
+|+|+|++||||||+++.|+..++ .++++. +-+++.+.....+. ......+ ..+.++ ...+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~-----~~~is~~d~lr~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 74 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG-----FTHLSAGDLLRAEIKSGSENG-ELIESMIKNGKIVPSEVTVKLLKNAIQAD 74 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC-----CeEEECChHHHHHHhcCChHH-HHHHHHHHCCCcCCHHHHHHHHHHHHhcc
Confidence 478999999999999999999884 447775 44443322100000 0000000 000011 1111111
Q ss_pred -CcchhcccCChHHHHHHHHHHhCC---CCCccEEEEeCCccchhccChhh
Q 023675 174 -GVICIACLISPYRKDRDACRSMLP---EGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 174 -~~~~i~~~~~~~~~~r~~ar~l~~---~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
+...++++......++..+..++. .+++ .++|+.|.+.+.+|+.++
T Consensus 75 ~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~-~i~l~~~~~~~~~Rl~~R 124 (183)
T TIGR01359 75 GSKKFLIDGFPRNEENLEAWEKLMDNKVNFKF-VLFFDCPEEVMIKRLLKR 124 (183)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCE-EEEEECCHHHHHHHHhcC
Confidence 222344443333344444444432 3454 489999999998887543
No 450
>PRK13975 thymidylate kinase; Provisional
Probab=98.50 E-value=5.3e-07 Score=76.02 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
|.+|+|.|++||||||+++.|+..+.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999999984
No 451
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.49 E-value=1.1e-07 Score=80.86 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=27.1
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
++.+.+|++++|+|+|||||||+++.|++.
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence 667778899999999999999999999954
No 452
>PRK01184 hypothetical protein; Provisional
Probab=98.47 E-value=1.2e-06 Score=73.14 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=75.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-Ceecccccc-cCCCCCcccHHH----HHHH-----HHHHH--HHH
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCRHGLN-RDLSFKAEDRVE----NIRR-----IGEVA--KLF 170 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~i~~~~~-~~~~~~~~~~~~----~~~~-----v~~~~--~~~ 170 (279)
+|+|+|++||||||+++ ++..++.+ +++ ||.+++.+. ..+......... .+.. +...+ .+.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~-----~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~ 76 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIP-----VVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIR 76 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCc-----EEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 78999999999999988 45555333 566 555654331 111111111110 0101 00111 111
Q ss_pred HhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCC---CCCCCccc--------cCc
Q 023675 171 ADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREG---KVKGFTGI--------DDP 239 (279)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~---~~~~~~~~--------r~~ 239 (279)
...+..++++... ...+.+.+++.+.. .+..|++++|.+.+.+|+..+- +.. ....+... ...
T Consensus 77 ~~~~~~vvidg~r-~~~e~~~~~~~~~~-~~~~i~v~~~~~~~~~Rl~~R~----~~~d~~~~~~~~~r~~~q~~~~~~~ 150 (184)
T PRK01184 77 EKGDEVVVIDGVR-GDAEVEYFRKEFPE-DFILIAIHAPPEVRFERLKKRG----RSDDPKSWEELEERDERELSWGIGE 150 (184)
T ss_pred hcCCCcEEEeCCC-CHHHHHHHHHhCCc-ccEEEEEECCHHHHHHHHHHcC----CCCChhhHHHHHHHHHHHhccCHHH
Confidence 1112333444332 33445556666653 3556999999999999875321 000 00001000 111
Q ss_pred CCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 240 YEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 240 ~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
++. .++++|+. +.+++++..++.+.++.
T Consensus 151 ~~~--~ad~vI~N----~~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 151 VIA--LADYMIVN----DSTLEEFRARVRKLLER 178 (184)
T ss_pred HHH--hcCEEEeC----CCCHHHHHHHHHHHHHH
Confidence 222 37788875 34788888887776653
No 453
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.46 E-value=5.6e-07 Score=80.07 Aligned_cols=39 Identities=26% Similarity=0.215 Sum_probs=36.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
..++|+|++||||||+++.|++.+ .+++|.+.++|.++.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~-~~~~G~i~~~g~~v~ 150 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARIL-STGISQLGLRGKKVG 150 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCcc-CCCCceEEECCEEee
Confidence 678999999999999999999999 899999999999885
No 454
>PLN02200 adenylate kinase family protein
Probab=98.42 E-value=1.5e-06 Score=75.82 Aligned_cols=166 Identities=13% Similarity=0.163 Sum_probs=82.2
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCCC-------------CCcccHHHHHH
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDLS-------------FKAEDRVENIR 161 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~~-------------~~~~~~~~~~~ 161 (279)
++...++.+++|+|++||||||+++.|+..++. .++...+ +++.+...-. ..+.+ ....
T Consensus 37 ~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~-----~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e--~~~~ 109 (234)
T PLN02200 37 SSKEKTPFITFVLGGPGSGKGTQCEKIVETFGF-----KHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSE--VTVK 109 (234)
T ss_pred CccCCCCEEEEEECCCCCCHHHHHHHHHHHhCC-----eEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHH--HHHH
Confidence 444566789999999999999999999998843 3666544 3432211000 00000 0001
Q ss_pred HHHHHHHHHHhC-CcchhcccCChHHHHHHHHHHhCC-CCCccEEEEeCCccchhccChhhHHHHHhC------CCCCCC
Q 023675 162 RIGEVAKLFADA-GVICIACLISPYRKDRDACRSMLP-EGDFIEVFMDVPLQVCEARDPKGLYKLARE------GKVKGF 233 (279)
Q Consensus 162 ~v~~~~~~~~~~-~~~~i~~~~~~~~~~r~~ar~l~~-~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~------~~~~~~ 233 (279)
.+. ..+... ....++++......++.....++. .+++ .++|++|.+.+.+|+.++-..+... .++..+
T Consensus 110 ~l~---~~l~~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~-vi~Ld~~~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y 185 (234)
T PLN02200 110 LIQ---KEMESSDNNKFLIDGFPRTEENRIAFERIIGAEPNV-VLFFDCPEEEMVKRVLNRNQGRVDDNIDTIKKRLKVF 185 (234)
T ss_pred HHH---HHHhcCCCCeEEecCCcccHHHHHHHHHHhccCCCE-EEEEECCHHHHHHHHHcCcCCCCCCCHHHHHHHHHHH
Confidence 111 111111 111234443333344443444433 3444 4899999999988875431000000 000011
Q ss_pred cccc---CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCC
Q 023675 234 TGID---DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF 276 (279)
Q Consensus 234 ~~~r---~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~ 276 (279)
.... ..||....--+.|| +..+++++.+.|.+.+.....
T Consensus 186 ~~~~~pv~~~y~~~~~~~~ID----a~~~~eeV~~~v~~~l~~~~~ 227 (234)
T PLN02200 186 NALNLPVIDYYSKKGKLYTIN----AVGTVDEIFEQVRPIFAACEA 227 (234)
T ss_pred HHHHHHHHHHHHhcCCEEEEE----CCCCHHHHHHHHHHHHHHcCC
Confidence 1111 11222111123444 467999999999998876543
No 455
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.41 E-value=6.2e-07 Score=76.31 Aligned_cols=31 Identities=32% Similarity=0.305 Sum_probs=27.3
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
++.+..|++++|+|||||||||+++.|++..
T Consensus 19 ~i~l~~g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 19 DIDMEKKNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred eEEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 4566668999999999999999999999865
No 456
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.40 E-value=2.3e-06 Score=87.86 Aligned_cols=42 Identities=26% Similarity=0.253 Sum_probs=35.3
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHH
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L 122 (279)
.++++++...-..+.++++++|++++|+|+||||||||++.+
T Consensus 614 ~L~v~~l~~~~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~ 655 (943)
T PRK00349 614 FLKLKGARENNLKNVDVEIPLGKFTCVTGVSGSGKSTLINET 655 (943)
T ss_pred eEEecCCccCCcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence 467777764445567999999999999999999999999875
No 457
>PRK06217 hypothetical protein; Validated
Probab=98.38 E-value=1.4e-06 Score=72.94 Aligned_cols=34 Identities=47% Similarity=0.576 Sum_probs=29.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.|+|+|.|||||||+++.|+..++.+ +++.|++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~-----~~~~D~~~ 36 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIP-----HLDTDDYF 36 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCc-----EEEcCcee
Confidence 58999999999999999999998654 77877764
No 458
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.37 E-value=3.6e-07 Score=76.80 Aligned_cols=43 Identities=28% Similarity=0.246 Sum_probs=38.4
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
.+.+++|+.++|+|++||||||++++|.+++ .++.|.+.+++.
T Consensus 19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i-~~~~~~i~ied~ 61 (186)
T cd01130 19 WLAVEARKNILISGGTGSGKTTLLNALLAFI-PPDERIITIEDT 61 (186)
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEECCc
Confidence 4577889999999999999999999999999 688899988653
No 459
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.37 E-value=4.6e-06 Score=69.32 Aligned_cols=25 Identities=52% Similarity=0.583 Sum_probs=23.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
|++++|+|||||||||+++.|++.+
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6899999999999999999999986
No 460
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.36 E-value=6.5e-07 Score=76.93 Aligned_cols=45 Identities=11% Similarity=-0.045 Sum_probs=32.7
Q ss_pred ccCChHHHHH-HHHHHhCC----CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 180 CLISPYRKDR-DACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 180 ~~~~~~~~~r-~~ar~l~~----~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
...+.++++| .++++++. .|++ +++|||+..++......+.+.++
T Consensus 126 ~~lS~G~~~r~~la~al~~~~~~~p~i--lilDEPt~gLD~~~~~~l~~~l~ 175 (212)
T cd03274 126 SNLSGGEKTLSSLALVFALHHYKPTPL--YVMDEIDAALDFRNVSIVANYIK 175 (212)
T ss_pred hhcCHHHHHHHHHHHHHHhcccCCCCE--EEEcCCCcCCCHHHHHHHHHHHH
Confidence 3467777777 78887752 3577 89999999998877766555444
No 461
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.35 E-value=7.2e-07 Score=75.31 Aligned_cols=62 Identities=21% Similarity=0.143 Sum_probs=53.3
Q ss_pred CCCeEEeecceeecCCc------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 79 STNILWHKNSVDKRDRQ------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~~------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
...|++.+..|+|.... |+.++.|....+||.||||||||+++|+|.. -.+.|.|.+.|.+.
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh-mv~~~~v~Vlgrsa 78 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH-MVGGGVVQVLGRSA 78 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc-cccCCeEEEcCcCc
Confidence 45689999999997432 7899999999999999999999999999997 56668998888764
No 462
>PRK14530 adenylate kinase; Provisional
Probab=98.32 E-value=2.4e-06 Score=73.39 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=27.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+..|+|+|++||||||+++.|++.++.+ +++..++
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~-----~i~~g~~ 37 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVE-----HVTTGDA 37 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeccHH
Confidence 4579999999999999999999998533 5654443
No 463
>PRK08118 topology modulation protein; Reviewed
Probab=98.31 E-value=1.2e-06 Score=72.56 Aligned_cols=99 Identities=27% Similarity=0.269 Sum_probs=53.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCC
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~ 183 (279)
.|.|+|++||||||+++.|+..++.+ +++-|.+.-. .++......+....+. .+....+. ++.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~-----~~~lD~l~~~----~~w~~~~~~~~~~~~~---~~~~~~~w--VidG~~ 68 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIP-----VHHLDALFWK----PNWEGVPKEEQITVQN---ELVKEDEW--IIDGNY 68 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCC-----ceecchhhcc----cCCcCCCHHHHHHHHH---HHhcCCCE--EEeCCc
Confidence 58999999999999999999998655 4555544210 0111112212211211 12222222 222211
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 184 ~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
+. ..+.. +..++.+ |+||.|.+.+..|..++-.
T Consensus 69 ~~--~~~~~---l~~~d~v-i~Ld~p~~~~~~R~~~R~~ 101 (167)
T PRK08118 69 GG--TMDIR---LNAADTI-IFLDIPRTICLYRAFKRRV 101 (167)
T ss_pred ch--HHHHH---HHhCCEE-EEEeCCHHHHHHHHHHHHH
Confidence 11 11111 1223443 9999999999999876643
No 464
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.31 E-value=3.3e-07 Score=82.67 Aligned_cols=48 Identities=10% Similarity=0.126 Sum_probs=45.5
Q ss_pred CcccCCCcceeeeeeccccc--CccccccCccccccccccccchhhhhhhhcccccccccc
Q 023675 14 PAICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQ 72 (279)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~ 72 (279)
.+|.+||||+|.|+++.|++ +|.+|+.+|+|+.||+.+|. |+|+||+.
T Consensus 364 ~~l~lN~Ig~v~i~~~~pi~fd~Y~~N~atG~FIlID~~tn~-----------TVgaGmI~ 413 (431)
T COG2895 364 ESLPLNEIGRVRISFDKPIAFDAYAENRATGSFILIDRLTNG-----------TVGAGMIL 413 (431)
T ss_pred cccCCCcceEEEEecCCceeecccccCcccccEEEEEcCCCC-----------ceeceeee
Confidence 45999999999999999999 99999999999999999999 89999986
No 465
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.31 E-value=1.1e-05 Score=69.09 Aligned_cols=27 Identities=26% Similarity=0.406 Sum_probs=24.0
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.+|.+++|+||||||||||++.|....
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~ 37 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERK 37 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcC
Confidence 468999999999999999999998653
No 466
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.30 E-value=9.4e-07 Score=78.64 Aligned_cols=111 Identities=25% Similarity=0.346 Sum_probs=57.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-cHHHHHHHH-HHHHHHHHhCCcchhccc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE-DRVENIRRI-GEVAKLFADAGVICIACL 181 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~-~~~~~~~~v-~~~~~~~~~~~~~~i~~~ 181 (279)
+|.|+|.|||||||+++.|...+...+.-.++++.+.+. +.... |... .....+..+ ..+...+ ....+++++.
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~~~~~-y~~~~~Ek~~R~~l~s~v~r~l-s~~~iVI~Dd 78 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--IDRND-YADSKKEKEARGSLKSAVERAL-SKDTIVILDD 78 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTSS-S--GGGHHHHHHHHHHHHHHHH-TT-SEEEE-S
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--cchhh-hhchhhhHHHHHHHHHHHHHhh-ccCeEEEEeC
Confidence 689999999999999999999986665566677766654 11111 3222 222222222 2233333 3345666665
Q ss_pred CChHHHHH----HHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 182 ISPYRKDR----DACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 182 ~~~~~~~r----~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
..-....| .++|+.-. .+..|++++|.+.+.+|..++
T Consensus 79 ~nYiKg~RYelyclAr~~~~--~~c~i~~~~~~e~~~~~N~~R 119 (270)
T PF08433_consen 79 NNYIKGMRYELYCLARAYGT--TFCVIYCDCPLETCLQRNSKR 119 (270)
T ss_dssp ---SHHHHHHHHHHHHHTT---EEEEEEEE--HHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHHHHcCC--CEEEEEECCCHHHHHHhhhcc
Confidence 44333333 33343222 466799999999999987543
No 467
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.30 E-value=7.2e-07 Score=75.53 Aligned_cols=43 Identities=30% Similarity=0.333 Sum_probs=38.7
Q ss_pred eecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 85 HKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 85 ~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
.++.+...++.|+++..|++-+|||.||||||-+++++.+...
T Consensus 16 sqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k 58 (330)
T COG4170 16 SQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK 58 (330)
T ss_pred CCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence 3456778889999999999999999999999999999999863
No 468
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.30 E-value=5.8e-06 Score=84.78 Aligned_cols=41 Identities=29% Similarity=0.287 Sum_probs=35.7
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHH
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA 121 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~ 121 (279)
.+++++++..-..+.++.+++|++++|+|+||||||||++-
T Consensus 612 ~l~l~~~~~~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~ 652 (924)
T TIGR00630 612 FLTLKGARENNLKNITVSIPLGLFTCITGVSGSGKSTLIND 652 (924)
T ss_pred eEEEEeCccCCcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence 47888877655667799999999999999999999999983
No 469
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.30 E-value=2.9e-06 Score=84.73 Aligned_cols=37 Identities=35% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+..++++.||+||||||+++.|++.|+.+ ++|.+.+.
T Consensus 441 ~~~~i~i~g~~~~gks~~~~~l~~~~~~~-----~~~~~~~~ 477 (661)
T PRK11860 441 RVPVICIDGPTASGKGTVAARVAEALGYH-----YLDSGALY 477 (661)
T ss_pred CcceEEeeCCCCCCHHHHHHHHHHHhCCe-----EecHHHhh
Confidence 34589999999999999999999999655 78877653
No 470
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.28 E-value=5.3e-06 Score=89.39 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=35.2
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHH
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~ 120 (279)
.++++++...-..+.++++++|++++|+|+||||||||++
T Consensus 600 ~L~l~~~~~~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 600 TLTLSKATKHNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred eEEEeccccCCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 4778877665566779999999999999999999999999
No 471
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.28 E-value=8.3e-07 Score=82.58 Aligned_cols=160 Identities=21% Similarity=0.221 Sum_probs=78.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHH-HHHHHHHHHHHHhCCcchh
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVEN-IRRIGEVAKLFADAGVICI 178 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~i 178 (279)
..|.+++|+|+||||||||+..|.+.|. ...-...+.. ......++.++...+ +++....+..+...+..++
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~-~~~~V~~ik~------~~~~~~~d~~~~d~~~~~~aga~~~~~~~~~~~~~ 75 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS-ERFSVGYYKH------GCHRFDIDREGKDSDLARKAGASTVMISDPEKHAL 75 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh-hCceEEEEEe------CCCCCCCCcccchHHHHHhccCcEEEEecCCEEEE
Confidence 4688999999999999999999999984 3221222221 001123333333222 1111111111222233333
Q ss_pred cccCChHHHHHHHHHHhCCCCCc--cEEEEeCCcc--chhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEE-cc
Q 023675 179 ACLISPYRKDRDACRSMLPEGDF--IEVFMDVPLQ--VCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLK-QM 253 (279)
Q Consensus 179 ~~~~~~~~~~r~~ar~l~~~~~~--i~i~ld~p~~--~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~-~~ 253 (279)
...... .+...+..+.+.++ ++.|-+++.. .+.+|..+.+ .....++..++..+-.++.++..++..+. .
T Consensus 76 ~~~~~~---~~~~~~~~~~~~D~vlvEG~k~~~~pki~~~~~~~~~~-~~~~~~~~~~v~av~~~~~~~~~~~~~~p~~- 150 (369)
T PRK14490 76 IAGGPP---DPLLERGAFLDCDLLLVEGLKELPLPKILLVDRERKIL-DLLEQGSVTNVVALVVPDDPASYPDFGLPVF- 150 (369)
T ss_pred EEeCCC---ChHHHHhccCCCCEEEECCCCCCCCCeEEEEeCCCCcc-cccccCCCCCEEEEEECCcccccccCCCccc-
Confidence 332222 22333333334453 3446677766 5555543322 22333455566666554443311122222 2
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q 023675 254 GDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 254 ~~~~~~~~e~~~~Il~~l~~ 273 (279)
+..+++++++.|++++..
T Consensus 151 --~~~~~~~~~~~i~~~~~~ 168 (369)
T PRK14490 151 --HRDDIAAIADFIEGHLLG 168 (369)
T ss_pred --CcccHHHHHHHHHHHHhc
Confidence 335788999999988865
No 472
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=6.1e-06 Score=77.96 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=91.5
Q ss_pred CCCeEEeecceeecCCc-------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCC
Q 023675 79 STNILWHKNSVDKRDRQ-------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF 151 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~~-------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~ 151 (279)
.+++.+.++.|.|.... ++..+.-..+.++|++|+||||+.+++.+.+ .|.+|.+.+.+.-- +++
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l-~~~rgi~~~~~r~r-------i~~ 431 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDL-TPTRGIVGRHPRLR-------IKY 431 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccC-Ccccceeeecccce-------ecc
Confidence 46788999999886544 5667777889999999999999999999999 88888887776421 122
Q ss_pred CcccHHHHHHH----HH------------HHHHHHHhCCcch---h--cccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675 152 KAEDRVENIRR----IG------------EVAKLFADAGVIC---I--ACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (279)
Q Consensus 152 ~~~~~~~~~~~----v~------------~~~~~~~~~~~~~---i--~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p 209 (279)
..+....++.. +. ++-.-+...|+.. . +..+|++|+.| ..|.....+|.+ +.||||
T Consensus 432 f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Phl--LVLDEP 509 (582)
T KOG0062|consen 432 FAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHL--LVLDEP 509 (582)
T ss_pred hhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcE--EEecCC
Confidence 22211111111 00 0111112222221 1 34588899988 777777888888 999999
Q ss_pred ccchhccChhhHHHHHh
Q 023675 210 LQVCEARDPKGLYKLAR 226 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~~~ 226 (279)
++.|+.---..|...++
T Consensus 510 TNhLD~dsl~AL~~Al~ 526 (582)
T KOG0062|consen 510 TNHLDRDSLGALAKALK 526 (582)
T ss_pred CccccHHHHHHHHHHHH
Confidence 99998766555555444
No 473
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.27 E-value=7.2e-06 Score=71.13 Aligned_cols=27 Identities=44% Similarity=0.582 Sum_probs=24.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHW 128 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~ 128 (279)
..+|+|.|++||||||+++.|++.++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~ 30 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGF 30 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 468999999999999999999998853
No 474
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.26 E-value=2e-06 Score=70.60 Aligned_cols=103 Identities=21% Similarity=0.169 Sum_probs=60.5
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCC-CcccHHHHHHHHHHHHHHHHhCC
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSF-KAEDRVENIRRIGEVAKLFADAG 174 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 174 (279)
+.....+.++.|+|||||||||+++.+.-.+. ..++.+.- .++... ++ .+.....
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~-~~~~~~~~-~~~~~~------g~~~~~~~~~---------------- 70 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALG-GAQSATRR-RSGVKA------GCIVAAVSAE---------------- 70 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHH-hcchhhhc-cCcccC------CCcceeeEEE----------------
Confidence 44555567999999999999999999877663 22222221 111110 10 0000000
Q ss_pred cchhcccCChHHHHH-HHHHHhCC----CCCccEEEEeCCccchhccChhhHHHH
Q 023675 175 VICIACLISPYRKDR-DACRSMLP----EGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 175 ~~~i~~~~~~~~~~r-~~ar~l~~----~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++.....++.+++++ .+++.+.. .+++ +++|||...++......+...
T Consensus 71 ~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~l--lllDEp~~gld~~~~~~l~~~ 123 (162)
T cd03227 71 LIFTRLQLSGGEKELSALALILALASLKPRPL--YILDEIDRGLDPRDGQALAEA 123 (162)
T ss_pred EehheeeccccHHHHHHHHHHHHhcCCCCCCE--EEEeCCCCCCCHHHHHHHHHH
Confidence 011112255566666 66777654 4567 999999999999877665543
No 475
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.25 E-value=2.8e-06 Score=71.97 Aligned_cols=34 Identities=35% Similarity=0.495 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEE
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTY 134 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i 134 (279)
+|.+|+|.|++||||||+++.|+..+...+.+.+
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~ 35 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVV 35 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCcee
Confidence 4789999999999999999999998744333333
No 476
>PRK07261 topology modulation protein; Provisional
Probab=98.25 E-value=2.2e-06 Score=71.12 Aligned_cols=98 Identities=28% Similarity=0.275 Sum_probs=53.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCC
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLIS 183 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~ 183 (279)
.|+|+|+||||||||++.|++.++.+ .++.|.+... .++......+....+. ..+.... .++++..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~-----~i~~D~~~~~----~~~~~~~~~~~~~~~~---~~~~~~~--wIidg~~ 67 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCP-----VLHLDTLHFQ----PNWQERDDDDMIADIS---NFLLKHD--WIIDGNY 67 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC-----eEecCCEEec----cccccCCHHHHHHHHH---HHHhCCC--EEEcCcc
Confidence 58999999999999999999988544 4444444211 0222223333333332 2233322 2333322
Q ss_pred hHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhh
Q 023675 184 PYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 184 ~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
........+. .++. .++||.|...|..|..++
T Consensus 68 ~~~~~~~~l~----~ad~-vI~Ld~p~~~~~~R~lkR 99 (171)
T PRK07261 68 SWCLYEERMQ----EADQ-IIFLNFSRFNCLYRAFKR 99 (171)
T ss_pred hhhhHHHHHH----HCCE-EEEEcCCHHHHHHHHHHH
Confidence 1111111111 1233 399999999999988665
No 477
>PRK13808 adenylate kinase; Provisional
Probab=98.24 E-value=2.7e-06 Score=77.57 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=26.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
.|+|+|++||||||+++.|+..|+. ++++..+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl-----~~is~gd 33 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGI-----VQLSTGD 33 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----ceecccH
Confidence 3789999999999999999999853 3677444
No 478
>PRK06761 hypothetical protein; Provisional
Probab=98.24 E-value=5.2e-06 Score=74.14 Aligned_cols=118 Identities=17% Similarity=0.186 Sum_probs=72.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCc-cEEEEcCeec-ccccccCCCCCcccHHHHHHHHHHHHHHHHh----CCc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNC-RHGLNRDLSFKAEDRVENIRRIGEVAKLFAD----AGV 175 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~-G~i~ldgd~i-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~~ 175 (279)
+.+++|.|++||||||+++.|+..+...+- -.++.+++.- ...+.....++..++..+++.....+..+.. .+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~ 82 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD 82 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence 468999999999999999999999843221 1123455432 2223334567777887777776665554443 333
Q ss_pred chhcccCChHHHHHHHHHH-hCCCCCccEEEEeCCccchhccChhh
Q 023675 176 ICIACLISPYRKDRDACRS-MLPEGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 176 ~~i~~~~~~~~~~r~~ar~-l~~~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
.++..+.......|+..+. ++.......++ ..|.+.+.+|..++
T Consensus 83 ~~i~~~~~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~r 127 (282)
T PRK06761 83 YYLLPYRKIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDR 127 (282)
T ss_pred eEEEEehhhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHH
Confidence 4455555555556655553 22222233355 88888888887554
No 479
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.24 E-value=1.2e-06 Score=73.41 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=22.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHccc
Q 023675 104 VIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
+|+|.|++||||||+++.|++.+.
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999984
No 480
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.22 E-value=1.1e-06 Score=74.99 Aligned_cols=29 Identities=45% Similarity=0.571 Sum_probs=26.7
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
-++|++++|+|+||||||||++.|.+.+.
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 36799999999999999999999999984
No 481
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.20 E-value=1.2e-05 Score=69.18 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=31.4
Q ss_pred ccCChHHHHHHHHHH-----hCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 180 CLISPYRKDRDACRS-----MLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 180 ~~~~~~~~~r~~ar~-----l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
..++.+++++..+.. ++.+|++ +++|||+..++....+.+++.+
T Consensus 125 ~~LS~G~~q~~~i~~~la~~~~~~p~l--lllDEP~~~LD~~~~~~i~~~l 173 (213)
T cd03277 125 HHQSGGERSVSTMLYLLSLQELTRCPF--RVVDEINQGMDPTNERKVFDML 173 (213)
T ss_pred hhccccHHHHHHHHHHHHHHhccCCCE--EEEecccccCCHHHHHHHHHHH
Confidence 456777777743332 2567777 9999999999988877655543
No 482
>COG4639 Predicted kinase [General function prediction only]
Probab=98.19 E-value=1.9e-06 Score=69.46 Aligned_cols=109 Identities=22% Similarity=0.198 Sum_probs=63.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc--cCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC 180 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~ 180 (279)
..++|+|++||||||+++..-.- .+ .++-++++..+. .....+........+.+.+....-...|-+.+.+
T Consensus 3 ~LvvL~G~~~sGKsT~ak~n~~~--~~-----~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiid 75 (168)
T COG4639 3 ILVVLRGASGSGKSTFAKENFLQ--NY-----VLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIID 75 (168)
T ss_pred eEEEEecCCCCchhHHHHHhCCC--cc-----eecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEE
Confidence 47899999999999999953222 11 455555543221 0000011111111222222222223457777877
Q ss_pred cCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccCh
Q 023675 181 LISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 181 ~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~ 218 (279)
......++|.....++... ..+.|++|.|.+.|..|.+
T Consensus 76 Atn~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk 115 (168)
T COG4639 76 ATNLRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK 115 (168)
T ss_pred cccCCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence 7777777777677666654 2345899999999999974
No 483
>PRK14531 adenylate kinase; Provisional
Probab=98.18 E-value=3.4e-06 Score=70.67 Aligned_cols=35 Identities=34% Similarity=0.347 Sum_probs=27.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eecc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCR 142 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~ 142 (279)
..++++|++||||||+++.|+..++.+ +++. +-++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~-----~is~gd~lr 38 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLR-----HLSTGDLLR 38 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC-----eEecccHHH
Confidence 368999999999999999999988533 6664 3344
No 484
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.16 E-value=5.1e-06 Score=76.08 Aligned_cols=111 Identities=21% Similarity=0.144 Sum_probs=60.1
Q ss_pred EEEEcCCCChHHHHHHHHHHccc-cCCccEEEEcCeeccc-cc-ccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhccc
Q 023675 105 IWITGLSGSGKSTLACALSQALH-WRGKLTYILDGDNCRH-GL-NRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACL 181 (279)
Q Consensus 105 i~lvG~sGsGKSTl~~~L~~~l~-~~~~G~i~ldgd~i~~-~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~ 181 (279)
.+|+|++||||||+++.|+..+. ..+....+++.|++-. .. ....+.+..+..+.++ ..+...+. ..+.+++.+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~~~~~~~k~~R--~~i~~~le-~~v~a~~~g 78 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSREIPSQWKQFR--QELLKYLE-HFLVAVING 78 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCCCcHHHHHHHH--HHHHHHHH-HHHHHhcCc
Confidence 67999999999999999998884 3566677899998641 11 1111111122222222 12233222 233333322
Q ss_pred --CCh--H--HHHHHHHHHhCCCCCccEEEEeCCccchhccChh
Q 023675 182 --ISP--Y--RKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 182 --~~~--~--~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
.++ + +..+...+..+.+.. +.|+++.+.+.+..|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~nv~~L~~~g-~vv~L~as~e~~~~rLi~ 121 (340)
T TIGR03575 79 SELSAPPGKTEGMWEDFVDCLKEQG-LIISSGASEAQGCHSLTK 121 (340)
T ss_pred ccccCCcccchhhhHHHHHHHHhCC-eEEEcCCcHHHHHHHHhH
Confidence 111 0 122323334444433 348999998888877743
No 485
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.15 E-value=6.7e-05 Score=63.15 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+|.+++|+||||||||||++.|...+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 67899999999999999999998876
No 486
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.12 E-value=8e-06 Score=68.49 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=26.8
Q ss_pred EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
|+|+|++||||||+++.|+..++ ..+++.+++
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~-----~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG-----LPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-----CeEEECcHH
Confidence 78999999999999999999874 346776554
No 487
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.11 E-value=7e-06 Score=76.66 Aligned_cols=116 Identities=22% Similarity=0.250 Sum_probs=67.4
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe----eccccc-------------ccCCC--CCcc----
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD----NCRHGL-------------NRDLS--FKAE---- 154 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd----~i~~~~-------------~~~~~--~~~~---- 154 (279)
...+|++++|+|+||-||||.+++|+|.+ .|.-|.. ++. ++-+.. ..++. ..++
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel-~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGEL-KPNLGRY--EDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCcc-ccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 34689999999999999999999999999 7765543 321 110000 00000 0000
Q ss_pred cHHHHHHHHHHHHHHHHhCC----------cch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 155 DRVENIRRIGEVAKLFADAG----------VIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 155 ~~~~~~~~v~~~~~~~~~~~----------~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
-.+..-..+.++.....+.| +.. -+..+|+++-|| +++.+++++++| -++|||.+.|+-+..
T Consensus 173 iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADv--Y~FDEpsSyLDi~qR 249 (591)
T COG1245 173 IPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADV--YFFDEPSSYLDIRQR 249 (591)
T ss_pred HHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCE--EEEcCCcccccHHHH
Confidence 00000001111111111111 111 234578888888 888899999998 899999998876654
No 488
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.10 E-value=1.3e-05 Score=73.00 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=33.6
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+|++++|+||||+||||++..|++.+ .+..+.|.+.+-|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l-~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY-KAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCeEEEEecCc
Confidence 468999999999999999999999999 56666666554443
No 489
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.10 E-value=6.5e-05 Score=66.76 Aligned_cols=143 Identities=22% Similarity=0.254 Sum_probs=76.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhC----Ccchh
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADA----GVICI 178 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~~i 178 (279)
+++.+.|.|||||||-+++|..+= -..+|.-+.. .+.+...++... ..+++
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED~G------y~cvDNlP~~-------------------Ll~~l~~~~~~~~~~~~~~Ai 56 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALEDLG------YYCVDNLPPS-------------------LLPQLIELLAQSNSKIEKVAI 56 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHhcC------eeEEcCCcHH-------------------HHHHHHHHHHhcCCCCceEEE
Confidence 578999999999999999998753 3355544331 122333333311 11222
Q ss_pred cccCChHH--HHH-HHHHHhCC-CCCccEEEEeCCccchhccChhh--HHHHHhCCC-CCCCccccCcCCC-CCCCceEE
Q 023675 179 ACLISPYR--KDR-DACRSMLP-EGDFIEVFMDVPLQVCEARDPKG--LYKLAREGK-VKGFTGIDDPYEP-PLNCEIVL 250 (279)
Q Consensus 179 ~~~~~~~~--~~r-~~ar~l~~-~~~~i~i~ld~p~~~l~~R~~~~--l~~~~~~~~-~~~~~~~r~~~~~-~~~a~~~i 250 (279)
+-...... ... +....+.. ...+-.+|||++.+.|.+|.... -......+. ++.+...|..+.+ .+.||++|
T Consensus 57 ~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~Er~~L~~lr~~Ad~vI 136 (284)
T PF03668_consen 57 VIDIRSREFFEDLFEALDELRKKGIDVRILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKERELLEPLRERADLVI 136 (284)
T ss_pred EEeCCChHHHHHHHHHHHHHHhcCCceEEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHHHHHHHHHHHhCCEEE
Confidence 21111111 111 22222222 22445599999999999997421 000000000 0111111222222 12488999
Q ss_pred EccCCCCCCHHHHHHHHHHHHHh
Q 023675 251 KQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 251 ~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
|| +..++.+.-+.|.+.+..
T Consensus 137 DT---s~l~~~~Lr~~i~~~~~~ 156 (284)
T PF03668_consen 137 DT---SNLSVHQLRERIRERFGG 156 (284)
T ss_pred EC---CCCCHHHHHHHHHHHhcc
Confidence 99 999999999999887753
No 490
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.08 E-value=1.9e-06 Score=66.75 Aligned_cols=33 Identities=45% Similarity=0.551 Sum_probs=27.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+|+|+|+|||||||+++.|+..++ ..+++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~-----~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG-----FPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT-----CEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC-----CeEEEecce
Confidence 589999999999999999999884 336676663
No 491
>PRK02496 adk adenylate kinase; Provisional
Probab=98.08 E-value=9.9e-06 Score=67.72 Aligned_cols=25 Identities=36% Similarity=0.520 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHcccc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHW 128 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~ 128 (279)
.++|+|++||||||+++.|+..++.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~ 27 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHI 27 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4789999999999999999998853
No 492
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=98.07 E-value=2.9e-05 Score=73.18 Aligned_cols=140 Identities=20% Similarity=0.210 Sum_probs=94.0
Q ss_pred CCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc------ccccc
Q 023675 80 TNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR------HGLNR 147 (279)
Q Consensus 80 ~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~------~~~~~ 147 (279)
.-++++++++.-.. ..||.+.+||+++|.|-.|.|-+.|+.+|+|+. .+.+|.|.++|.++. +....
T Consensus 256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~~~~G~I~l~G~~v~~~~~~~~~r~~ 334 (501)
T COG3845 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-KPASGRILLNGKDVLGRLSPRERRRL 334 (501)
T ss_pred eEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-ccCCceEEECCEeccccCCHHHHHhc
Confidence 44677777765533 349999999999999999999999999999998 677799999999861 11122
Q ss_pred CCCCCcccHHH-----------H------------------HHHHHH-HHHHHHhCCcc-----hhcccCChHHHHH-HH
Q 023675 148 DLSFKAEDRVE-----------N------------------IRRIGE-VAKLFADAGVI-----CIACLISPYRKDR-DA 191 (279)
Q Consensus 148 ~~~~~~~~~~~-----------~------------------~~~v~~-~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ 191 (279)
.++|.++++.. + ...+.. ...+...+.+. .-...+|++.+|+ =.
T Consensus 335 G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~Il 414 (501)
T COG3845 335 GLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLIL 414 (501)
T ss_pred CCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhh
Confidence 34454444310 0 001111 11222233332 2344577888887 66
Q ss_pred HHHhCCCCCccEEEEeCCccchhccChhhHH
Q 023675 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
+|++..+|++ ++...|+-.++--....++
T Consensus 415 aREl~~~p~l--LI~~qPTrGLDvgA~~~I~ 443 (501)
T COG3845 415 ARELARRPDL--LIAAQPTRGLDVGAIEFIH 443 (501)
T ss_pred hhhhccCCCE--EEEcCCCccccHHHHHHHH
Confidence 8999999998 8999998888765544433
No 493
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.07 E-value=3.2e-05 Score=65.43 Aligned_cols=110 Identities=25% Similarity=0.371 Sum_probs=56.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccC--CCCCcccHHHHHHHHHHHHHHHHh--CCcchhc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD--LSFKAEDRVENIRRIGEVAKLFAD--AGVICIA 179 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~i~ 179 (279)
.+.+.|++||||||+++-|++.|.....-.+.+..|-.+ ....+ .+.-.+..++.... ....++.. ....+++
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~-~i~~DEslpi~ke~yres~~k--s~~rlldSalkn~~VIv 79 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLR-GILWDESLPILKEVYRESFLK--SVERLLDSALKNYLVIV 79 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhh-heecccccchHHHHHHHHHHH--HHHHHHHHHhcceEEEE
Confidence 578999999999999999999995443333433332221 11100 11111111221111 11111111 1345666
Q ss_pred ccCChHHHHH-H---HHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 180 CLISPYRKDR-D---ACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 180 ~~~~~~~~~r-~---~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
+.+.-....| + .+..+-. .+-.|++.+|++.|.+|..
T Consensus 80 DdtNYyksmRrqL~ceak~~~t--t~ciIyl~~plDtc~rrN~ 120 (261)
T COG4088 80 DDTNYYKSMRRQLACEAKERKT--TWCIIYLRTPLDTCLRRNR 120 (261)
T ss_pred ecccHHHHHHHHHHHHHHhcCC--ceEEEEEccCHHHHHHhhc
Confidence 6544333223 2 2222222 3445999999999999874
No 494
>PRK06547 hypothetical protein; Provisional
Probab=98.06 E-value=6.9e-06 Score=68.30 Aligned_cols=38 Identities=34% Similarity=0.382 Sum_probs=30.2
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.+..+|+|.|+|||||||+++.|+..+.. .+++.|++.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~-----~~~~~d~~~ 50 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGF-----QLVHLDDLY 50 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC-----Ceeccccee
Confidence 44668899999999999999999998743 366777654
No 495
>PLN02165 adenylate isopentenyltransferase
Probab=98.05 E-value=3.3e-05 Score=70.33 Aligned_cols=30 Identities=37% Similarity=0.470 Sum_probs=26.8
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
.-.+|.+++|+||+|||||||+..|++.++
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 345688999999999999999999999984
No 496
>PLN02924 thymidylate kinase
Probab=98.05 E-value=1.8e-05 Score=68.47 Aligned_cols=35 Identities=34% Similarity=0.460 Sum_probs=29.6
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G 132 (279)
..++|.+|+|-|..||||||+++.|+..+...+.-
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~ 46 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVA 46 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 34679999999999999999999999999654433
No 497
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.04 E-value=2.6e-05 Score=67.90 Aligned_cols=42 Identities=24% Similarity=0.166 Sum_probs=34.7
Q ss_pred eccCCeEEEEEcCCCChHHHHH-HHHHHccccCCccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLA-CALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~-~~L~~~l~~~~~G~i~ldgd~ 140 (279)
-+++|+++.|+|++||||||++ +.+.+.+ .++...+++..+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~-~~g~~~~yi~~e~ 62 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFL-QNGYSVSYVSTQL 62 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHH-hCCCcEEEEeCCC
Confidence 3788999999999999999995 7788777 6677778887543
No 498
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.03 E-value=4.3e-06 Score=72.57 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=29.2
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccE
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLT 133 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~ 133 (279)
.++.+++|.|+||||||||++.|++.+ .+..|.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l-~~~~g~ 63 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALL-QQDGEL 63 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh-hhccCC
Confidence 467899999999999999999999999 566665
No 499
>PRK08356 hypothetical protein; Provisional
Probab=98.03 E-value=2.5e-05 Score=66.06 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHH
Q 023675 102 GCVIWITGLSGSGKSTLACALSQ 124 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~ 124 (279)
..+++|+|++||||||+++.|..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999964
No 500
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.03 E-value=9.7e-06 Score=69.38 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=56.1
Q ss_pred EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee-cccccccCC-------------CCCcccHHHHHHHHHHHHHHH
Q 023675 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN-CRHGLNRDL-------------SFKAEDRVENIRRIGEVAKLF 170 (279)
Q Consensus 105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~-i~~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~ 170 (279)
|+|+|++||||||+++.|+..++. .+++..+ +++.+...- .+.+.+. ....+ ...+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~-----~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~--~~~l~---~~~i 71 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGL-----PHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEI--VNQLV---KERL 71 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC-----CeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHH--HHHHH---HHHH
Confidence 789999999999999999998743 3666543 333221110 0111110 01111 1111
Q ss_pred Hh---CCcchhcccCChHHHHHHHHHHhCC-CCCccEEEEeCCccchhccChhh
Q 023675 171 AD---AGVICIACLISPYRKDRDACRSMLP-EGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 171 ~~---~~~~~i~~~~~~~~~~r~~ar~l~~-~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
.. .+...++++......+.+.+.+... .+.+ .|+|+.|.+.+.+|+..+
T Consensus 72 ~~~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~-vi~L~~~~~~~~~Rl~~R 124 (210)
T TIGR01351 72 TQNQDNENGFILDGFPRTLSQAEALDALLKEKIDA-VIELDVPDEELVERLSGR 124 (210)
T ss_pred hcCcccCCcEEEeCCCCCHHHHHHHHHHhccCCCE-EEEEECCHHHHHHHHHCC
Confidence 11 0122234433333344455555554 4444 489999999999888654
Done!