Query 023675
Match_columns 279
No_of_seqs 348 out of 3419
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 10:54:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023675.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023675hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3uie_A Adenylyl-sulfate kinase 99.9 1.7E-26 5.9E-31 194.9 14.7 195 80-279 3-200 (200)
2 3cr8_A Sulfate adenylyltranfer 99.9 1E-23 3.4E-28 203.0 8.0 238 29-277 297-543 (552)
3 1m8p_A Sulfate adenylyltransfe 99.9 8.3E-23 2.8E-27 197.7 10.3 235 34-278 332-571 (573)
4 1x6v_B Bifunctional 3'-phospho 99.8 7.2E-20 2.5E-24 177.7 14.1 196 80-278 26-227 (630)
5 2gks_A Bifunctional SAT/APS ki 99.8 5.1E-20 1.7E-24 177.3 11.7 235 34-278 306-545 (546)
6 1m7g_A Adenylylsulfate kinase; 99.8 1.5E-19 5.3E-24 153.3 11.8 187 88-278 11-207 (211)
7 2pez_A Bifunctional 3'-phospho 99.8 9.3E-19 3.2E-23 144.5 15.6 175 100-277 3-179 (179)
8 3fvq_A Fe(3+) IONS import ATP- 99.8 4.7E-19 1.6E-23 161.8 12.9 140 81-223 4-179 (359)
9 3tif_A Uncharacterized ABC tra 99.8 3.7E-19 1.3E-23 154.0 10.7 140 82-224 2-187 (235)
10 3gfo_A Cobalt import ATP-bindi 99.8 3.7E-19 1.3E-23 157.4 10.7 140 81-223 7-184 (275)
11 2yvu_A Probable adenylyl-sulfa 99.8 1.6E-18 5.6E-23 143.9 14.0 175 96-273 7-183 (186)
12 3tui_C Methionine import ATP-b 99.8 6.9E-19 2.4E-23 160.9 12.5 142 80-224 23-205 (366)
13 3nh6_A ATP-binding cassette SU 99.8 2.7E-19 9.2E-24 160.5 8.7 143 79-224 51-232 (306)
14 3rlf_A Maltose/maltodextrin im 99.8 7.3E-19 2.5E-23 161.7 11.5 140 81-223 3-174 (381)
15 1sgw_A Putative ABC transporte 99.8 2.5E-18 8.5E-23 146.7 12.6 141 80-224 9-175 (214)
16 2pcj_A ABC transporter, lipopr 99.8 1.4E-18 4.9E-23 149.3 10.9 140 82-224 5-182 (224)
17 1vpl_A ABC transporter, ATP-bi 99.8 2.9E-18 9.8E-23 150.2 12.4 142 80-224 14-188 (256)
18 1ji0_A ABC transporter; ATP bi 99.8 1.6E-18 5.6E-23 150.4 10.7 141 81-224 6-181 (240)
19 1b0u_A Histidine permease; ABC 99.8 1.7E-18 5.7E-23 152.3 10.8 141 81-224 6-195 (262)
20 1z47_A CYSA, putative ABC-tran 99.8 3.3E-18 1.1E-22 156.2 12.8 142 80-224 13-187 (355)
21 1oxx_K GLCV, glucose, ABC tran 99.8 2.9E-18 9.9E-23 156.7 12.5 140 82-224 4-182 (353)
22 2it1_A 362AA long hypothetical 99.8 4.1E-18 1.4E-22 156.0 13.4 140 82-224 4-175 (362)
23 2olj_A Amino acid ABC transpor 99.8 1.1E-17 3.8E-22 147.1 14.8 141 81-224 24-201 (263)
24 1g29_1 MALK, maltose transport 99.8 3.7E-18 1.3E-22 157.0 12.3 139 82-223 4-180 (372)
25 2ff7_A Alpha-hemolysin translo 99.8 6.2E-18 2.1E-22 147.3 12.7 142 80-224 6-187 (247)
26 2yyz_A Sugar ABC transporter, 99.8 3.7E-18 1.3E-22 156.2 11.6 139 82-223 4-174 (359)
27 4g1u_C Hemin import ATP-bindin 99.7 2.8E-18 9.7E-23 151.1 10.1 141 81-224 11-189 (266)
28 1g6h_A High-affinity branched- 99.7 6.3E-18 2.2E-22 148.1 11.7 141 81-224 7-195 (257)
29 2onk_A Molybdate/tungstate ABC 99.7 1.2E-17 4.2E-22 144.9 13.3 139 82-224 2-168 (240)
30 2ihy_A ABC transporter, ATP-bi 99.7 4.5E-18 1.6E-22 150.8 10.8 141 81-224 21-203 (279)
31 1v43_A Sugar-binding transport 99.7 5E-18 1.7E-22 156.0 11.3 141 81-224 11-183 (372)
32 1mv5_A LMRA, multidrug resista 99.7 4.7E-18 1.6E-22 147.8 10.6 141 82-225 2-182 (243)
33 3d31_A Sulfate/molybdate ABC t 99.7 9.9E-18 3.4E-22 152.8 12.9 140 82-224 2-169 (348)
34 2ixe_A Antigen peptide transpo 99.7 3.6E-17 1.2E-21 144.4 14.2 144 80-226 15-200 (271)
35 2d2e_A SUFC protein; ABC-ATPas 99.7 1.7E-17 5.9E-22 144.8 11.3 142 82-226 4-187 (250)
36 2yz2_A Putative ABC transporte 99.7 2.5E-17 8.6E-22 145.0 12.4 140 82-224 3-180 (266)
37 2zu0_C Probable ATP-dependent 99.7 3E-17 1E-21 144.6 10.7 146 80-227 19-209 (267)
38 2pjz_A Hypothetical protein ST 99.7 1E-16 3.6E-21 140.8 13.7 141 82-227 2-173 (263)
39 2ghi_A Transport protein; mult 99.7 9.5E-17 3.2E-21 140.9 13.0 142 80-225 16-198 (260)
40 2cbz_A Multidrug resistance-as 99.7 1E-17 3.6E-22 145.0 6.6 142 81-225 3-170 (237)
41 4f4c_A Multidrug resistance pr 99.7 3.3E-17 1.1E-21 172.0 11.0 173 77-252 1072-1288(1321)
42 2pze_A Cystic fibrosis transme 99.7 1.3E-16 4.5E-21 137.4 12.9 139 81-224 6-172 (229)
43 4f4c_A Multidrug resistance pr 99.7 1E-16 3.5E-21 168.3 14.5 143 78-223 412-595 (1321)
44 3gd7_A Fusion complex of cysti 99.7 8.6E-17 2.9E-21 148.6 12.3 145 79-227 17-200 (390)
45 3qf4_A ABC transporter, ATP-bi 99.7 3.1E-17 1.1E-21 159.4 8.7 145 79-226 339-523 (587)
46 3b5x_A Lipid A export ATP-bind 99.7 1.8E-17 6.2E-22 161.0 6.9 145 79-226 339-524 (582)
47 3qf4_B Uncharacterized ABC tra 99.7 5.1E-18 1.8E-22 165.3 2.5 144 78-224 351-533 (598)
48 4a82_A Cystic fibrosis transme 99.7 2.1E-16 7.3E-21 153.3 12.2 143 79-224 337-519 (578)
49 3b60_A Lipid A export ATP-bind 99.7 2.5E-16 8.5E-21 152.9 12.6 143 79-224 339-522 (582)
50 2yl4_A ATP-binding cassette SU 99.7 2.3E-16 7.9E-21 153.6 11.9 143 79-224 338-525 (595)
51 2qi9_C Vitamin B12 import ATP- 99.7 2.2E-16 7.7E-21 137.6 10.5 139 82-224 5-175 (249)
52 2nq2_C Hypothetical ABC transp 99.7 7.5E-16 2.6E-20 134.6 13.5 136 82-224 5-170 (253)
53 3g5u_A MCG1178, multidrug resi 99.6 1E-16 3.6E-21 167.8 4.1 142 78-222 384-566 (1284)
54 2bbs_A Cystic fibrosis transme 99.6 1.3E-15 4.6E-20 135.5 9.3 140 80-224 39-201 (290)
55 4eun_A Thermoresistant glucoki 99.6 6.4E-16 2.2E-20 129.9 5.4 160 97-274 24-194 (200)
56 3g5u_A MCG1178, multidrug resi 99.6 2.5E-15 8.5E-20 157.4 9.6 145 79-226 1028-1215(1284)
57 3ozx_A RNAse L inhibitor; ATP 99.5 2.6E-14 9E-19 137.3 11.3 140 81-224 269-427 (538)
58 1qhx_A CPT, protein (chloramph 99.5 4.5E-14 1.6E-18 115.7 9.4 159 101-271 2-176 (178)
59 1knq_A Gluconate kinase; ALFA/ 99.5 5.5E-14 1.9E-18 115.1 9.1 156 100-273 6-173 (175)
60 3t61_A Gluconokinase; PSI-biol 99.5 2E-14 6.9E-19 120.6 4.4 156 100-276 16-182 (202)
61 3nwj_A ATSK2; P loop, shikimat 99.5 3.1E-15 1.1E-19 130.5 -0.7 177 81-273 17-236 (250)
62 3bk7_A ABC transporter ATP-bin 99.5 2.4E-13 8.3E-18 132.3 12.2 140 81-224 357-513 (607)
63 1yqt_A RNAse L inhibitor; ATP- 99.4 3.1E-13 1.1E-17 129.9 11.7 140 81-224 287-443 (538)
64 4gp7_A Metallophosphoesterase; 99.4 3.6E-14 1.2E-18 116.4 3.1 114 95-218 2-119 (171)
65 1yqt_A RNAse L inhibitor; ATP- 99.4 2.7E-13 9.3E-18 130.3 8.3 124 96-223 42-199 (538)
66 2iw3_A Elongation factor 3A; a 99.4 5E-13 1.7E-17 135.3 9.7 57 81-138 671-734 (986)
67 3j16_B RLI1P; ribosome recycli 99.4 3.9E-13 1.3E-17 130.7 8.5 137 87-226 83-265 (608)
68 3bk7_A ABC transporter ATP-bin 99.4 2.2E-13 7.5E-18 132.6 6.7 135 85-223 95-269 (607)
69 3vaa_A Shikimate kinase, SK; s 99.4 2.1E-14 7.1E-19 120.5 -0.6 163 93-274 16-196 (199)
70 3ux8_A Excinuclease ABC, A sub 99.4 1.4E-12 4.9E-17 128.5 9.7 140 82-224 24-246 (670)
71 1g8f_A Sulfate adenylyltransfe 99.3 3.6E-13 1.2E-17 128.2 4.4 175 34-278 330-510 (511)
72 3ozx_A RNAse L inhibitor; ATP 99.3 7.7E-13 2.6E-17 127.1 6.3 125 98-225 21-181 (538)
73 3j16_B RLI1P; ribosome recycli 99.3 1.5E-11 5.3E-16 119.5 12.3 124 94-223 365-508 (608)
74 3ux8_A Excinuclease ABC, A sub 99.3 1.4E-11 4.8E-16 121.4 10.2 44 178-223 540-587 (670)
75 1zp6_A Hypothetical protein AT 99.2 5.6E-12 1.9E-16 104.2 4.7 161 98-275 5-177 (191)
76 3a4m_A L-seryl-tRNA(SEC) kinas 99.2 7.6E-11 2.6E-15 102.9 11.9 162 100-274 2-174 (260)
77 2bdt_A BH3686; alpha-beta prot 99.2 2.1E-11 7.3E-16 100.8 7.7 154 102-268 2-168 (189)
78 2iw3_A Elongation factor 3A; a 99.2 9.7E-11 3.3E-15 118.7 13.5 139 80-227 434-593 (986)
79 1z6g_A Guanylate kinase; struc 99.2 3.1E-12 1.1E-16 108.9 0.8 45 92-141 13-57 (218)
80 4e22_A Cytidylate kinase; P-lo 99.2 9.5E-11 3.3E-15 101.9 9.7 35 100-135 25-62 (252)
81 2rhm_A Putative kinase; P-loop 99.1 1.4E-10 4.8E-15 95.7 9.3 164 100-273 3-188 (193)
82 3trf_A Shikimate kinase, SK; a 99.1 1.7E-12 5.7E-17 107.0 -2.7 156 101-273 4-174 (185)
83 2pt7_A CAG-ALFA; ATPase, prote 99.1 7.6E-11 2.6E-15 106.6 7.3 125 95-272 164-289 (330)
84 3kb2_A SPBC2 prophage-derived 99.1 2.9E-11 9.9E-16 97.9 4.1 141 103-273 2-166 (173)
85 2vli_A Antibiotic resistance p 99.1 3E-11 1E-15 99.0 3.7 160 101-274 4-172 (183)
86 3tr0_A Guanylate kinase, GMP k 99.1 6.9E-10 2.4E-14 92.5 11.4 41 96-141 1-41 (205)
87 2p5t_B PEZT; postsegregational 99.1 1.3E-12 4.4E-17 113.8 -5.6 121 98-221 28-158 (253)
88 3b85_A Phosphate starvation-in 99.1 3.7E-12 1.2E-16 108.0 -2.9 107 99-212 19-134 (208)
89 1kag_A SKI, shikimate kinase I 99.1 9.5E-12 3.3E-16 101.2 -0.7 159 101-273 3-172 (173)
90 2eyu_A Twitching motility prot 99.1 2.9E-10 9.8E-15 99.5 8.3 44 98-142 21-65 (261)
91 2vf7_A UVRA2, excinuclease ABC 99.0 2.2E-10 7.5E-15 114.8 7.8 47 80-126 501-548 (842)
92 2j41_A Guanylate kinase; GMP, 99.0 3.7E-09 1.3E-13 88.0 12.9 35 97-132 1-35 (207)
93 4aby_A DNA repair protein RECN 99.0 5.7E-10 2E-14 103.3 7.8 43 182-226 296-341 (415)
94 1via_A Shikimate kinase; struc 99.0 1.9E-11 6.4E-16 100.0 -3.1 150 104-274 6-167 (175)
95 1htw_A HI0065; nucleotide-bind 99.0 1.8E-10 6E-15 93.4 2.7 47 94-142 25-71 (158)
96 3b9q_A Chloroplast SRP recepto 98.9 1.2E-09 4.1E-14 97.6 7.3 48 94-142 92-139 (302)
97 1cke_A CK, MSSA, protein (cyti 98.9 1.6E-09 5.3E-14 91.8 7.1 36 101-141 4-39 (227)
98 1y63_A LMAJ004144AAA protein; 98.9 7.1E-10 2.4E-14 91.5 4.3 154 96-274 4-178 (184)
99 2r6f_A Excinuclease ABC subuni 98.9 4.4E-09 1.5E-13 106.1 10.7 43 81-123 629-671 (972)
100 3iij_A Coilin-interacting nucl 98.9 1.7E-10 5.7E-15 94.6 0.4 149 99-273 8-173 (180)
101 1tq4_A IIGP1, interferon-induc 98.9 5.3E-11 1.8E-15 110.6 -3.4 121 93-224 40-208 (413)
102 3a00_A Guanylate kinase, GMP k 98.9 1.6E-08 5.5E-13 83.4 11.8 26 102-127 1-26 (186)
103 3r20_A Cytidylate kinase; stru 98.9 1.4E-09 4.7E-14 93.6 5.5 36 101-141 8-43 (233)
104 3lnc_A Guanylate kinase, GMP k 98.9 1.8E-09 6.1E-14 92.2 6.2 34 93-126 18-52 (231)
105 1ye8_A Protein THEP1, hypothet 98.9 1.2E-09 4E-14 90.2 4.4 113 104-227 2-128 (178)
106 2ygr_A Uvrabc system protein A 98.9 8.2E-09 2.8E-13 104.5 11.1 42 81-122 647-688 (993)
107 3lw7_A Adenylate kinase relate 98.9 8.3E-10 2.8E-14 89.0 3.1 155 103-273 2-176 (179)
108 2og2_A Putative signal recogni 98.9 4E-09 1.4E-13 96.3 7.9 47 95-142 150-196 (359)
109 3fdi_A Uncharacterized protein 98.9 6E-09 2.1E-13 87.5 8.2 153 102-274 6-199 (201)
110 1ly1_A Polynucleotide kinase; 98.8 1.7E-09 5.9E-14 87.9 4.4 113 102-219 2-125 (181)
111 2iyv_A Shikimate kinase, SK; t 98.8 8.3E-11 2.8E-15 96.7 -3.5 153 103-273 3-168 (184)
112 3hdt_A Putative kinase; struct 98.8 5.5E-10 1.9E-14 95.5 1.5 163 101-277 13-222 (223)
113 3pih_A Uvrabc system protein A 98.8 1.6E-08 5.5E-13 102.2 11.8 44 179-224 803-850 (916)
114 3aez_A Pantothenate kinase; tr 98.8 9E-11 3.1E-15 105.3 -4.7 129 78-213 40-207 (312)
115 1e69_A Chromosome segregation 98.8 2E-08 6.9E-13 90.2 10.7 43 82-126 6-48 (322)
116 2c95_A Adenylate kinase 1; tra 98.8 1.5E-09 5.3E-14 89.6 2.8 160 99-273 6-193 (196)
117 2gza_A Type IV secretion syste 98.8 9.3E-10 3.2E-14 100.7 1.3 56 83-139 137-211 (361)
118 2pt5_A Shikimate kinase, SK; a 98.8 1.6E-09 5.5E-14 87.4 2.1 154 104-276 2-166 (168)
119 2v9p_A Replication protein E1; 98.8 7E-10 2.4E-14 99.1 -0.2 120 81-218 101-229 (305)
120 3tau_A Guanylate kinase, GMP k 98.8 4.6E-08 1.6E-12 82.2 11.0 27 100-126 6-32 (208)
121 1kgd_A CASK, peripheral plasma 98.8 1.1E-08 3.9E-13 83.9 6.9 37 100-136 3-39 (180)
122 4a74_A DNA repair and recombin 98.8 5.9E-09 2E-13 88.1 5.2 43 98-140 21-69 (231)
123 1qf9_A UMP/CMP kinase, protein 98.8 3.4E-09 1.1E-13 87.1 3.5 36 101-141 5-40 (194)
124 2npi_A Protein CLP1; CLP1-PCF1 98.8 4E-10 1.4E-14 106.2 -2.4 139 80-226 117-285 (460)
125 2ehv_A Hypothetical protein PH 98.8 9.9E-09 3.4E-13 87.8 6.5 43 98-141 26-70 (251)
126 3umf_A Adenylate kinase; rossm 98.7 4.3E-09 1.5E-13 89.5 3.8 169 96-276 23-216 (217)
127 3euj_A Chromosome partition pr 98.7 2.8E-09 9.5E-14 100.7 2.9 52 89-142 17-68 (483)
128 1e6c_A Shikimate kinase; phosp 98.7 6.1E-10 2.1E-14 90.3 -1.5 152 103-273 3-170 (173)
129 1tev_A UMP-CMP kinase; ploop, 98.7 5E-09 1.7E-13 86.2 4.0 36 101-141 2-37 (196)
130 1zuh_A Shikimate kinase; alpha 98.7 3.8E-10 1.3E-14 91.4 -3.0 151 102-271 7-167 (168)
131 1s96_A Guanylate kinase, GMP k 98.7 1.1E-08 3.9E-13 87.0 5.1 58 98-156 12-71 (219)
132 2ewv_A Twitching motility prot 98.7 2.6E-08 8.9E-13 91.4 7.7 45 97-142 131-176 (372)
133 3zvl_A Bifunctional polynucleo 98.7 2.2E-08 7.4E-13 93.2 6.9 104 96-220 252-357 (416)
134 3jvv_A Twitching mobility prot 98.7 6.5E-08 2.2E-12 88.2 9.8 90 97-211 118-207 (356)
135 1znw_A Guanylate kinase, GMP k 98.7 1.4E-08 4.9E-13 85.2 4.7 30 97-126 15-44 (207)
136 1ukz_A Uridylate kinase; trans 98.6 4.5E-08 1.5E-12 81.4 7.2 38 99-141 12-49 (203)
137 1sq5_A Pantothenate kinase; P- 98.6 4.1E-09 1.4E-13 94.2 0.4 61 80-141 36-123 (308)
138 2yhs_A FTSY, cell division pro 98.6 1.8E-08 6.3E-13 95.1 4.4 48 93-141 284-331 (503)
139 2bwj_A Adenylate kinase 5; pho 98.6 1.1E-08 3.8E-13 84.5 2.5 162 99-274 9-197 (199)
140 2dpy_A FLII, flagellum-specifi 98.6 2.5E-08 8.6E-13 93.4 5.0 59 80-139 130-193 (438)
141 4eaq_A DTMP kinase, thymidylat 98.6 1.4E-07 4.7E-12 80.7 9.0 36 99-136 23-58 (229)
142 2wwf_A Thymidilate kinase, put 98.6 1.4E-07 4.8E-12 78.7 8.9 31 99-129 7-37 (212)
143 2obl_A ESCN; ATPase, hydrolase 98.6 3.1E-08 1.1E-12 90.0 5.2 59 81-140 45-108 (347)
144 1rj9_A FTSY, signal recognitio 98.6 2.9E-08 9.9E-13 88.6 4.3 41 101-142 101-141 (304)
145 1vma_A Cell division protein F 98.6 1E-07 3.6E-12 85.1 7.4 45 96-141 98-142 (306)
146 3ake_A Cytidylate kinase; CMP 98.6 1.6E-08 5.4E-13 84.2 1.9 34 104-142 4-37 (208)
147 2qm8_A GTPase/ATPase; G protei 98.6 8.1E-09 2.8E-13 93.5 0.1 60 82-142 30-94 (337)
148 3c8u_A Fructokinase; YP_612366 98.6 2.6E-08 8.8E-13 83.7 3.2 43 99-141 19-63 (208)
149 1ltq_A Polynucleotide kinase; 98.6 4.6E-08 1.6E-12 86.5 4.9 113 102-219 2-125 (301)
150 1qhl_A Protein (cell division 98.5 3.1E-09 1E-13 91.1 -2.9 57 81-141 9-65 (227)
151 1nks_A Adenylate kinase; therm 98.5 4.5E-08 1.5E-12 80.2 4.2 38 103-140 2-39 (194)
152 2h92_A Cytidylate kinase; ross 98.5 5.4E-08 1.9E-12 81.9 4.7 35 102-141 3-37 (219)
153 2qor_A Guanylate kinase; phosp 98.5 1.5E-07 5.3E-12 78.5 7.2 29 98-126 8-36 (204)
154 2cdn_A Adenylate kinase; phosp 98.5 9E-09 3.1E-13 85.7 -0.4 38 99-141 17-54 (201)
155 1tf7_A KAIC; homohexamer, hexa 98.5 3.4E-08 1.1E-12 94.6 2.9 50 91-141 27-79 (525)
156 2plr_A DTMP kinase, probable t 98.5 1.5E-07 5E-12 78.4 6.5 29 101-129 3-31 (213)
157 1p9r_A General secretion pathw 98.5 2.8E-08 9.6E-13 92.5 2.2 61 81-142 143-206 (418)
158 1nn5_A Similar to deoxythymidy 98.5 5E-07 1.7E-11 75.4 9.6 31 99-129 6-36 (215)
159 3qf7_A RAD50; ABC-ATPase, ATPa 98.5 3E-07 1E-11 84.0 8.9 45 180-226 278-329 (365)
160 3e70_C DPA, signal recognition 98.5 5.1E-08 1.7E-12 87.9 3.5 43 99-142 126-168 (328)
161 1q3t_A Cytidylate kinase; nucl 98.5 8.9E-08 3.1E-12 81.9 4.8 38 99-141 13-50 (236)
162 1tf7_A KAIC; homohexamer, hexa 98.5 2.5E-07 8.5E-12 88.5 8.3 116 83-216 259-386 (525)
163 1lvg_A Guanylate kinase, GMP k 98.5 4.6E-08 1.6E-12 81.7 2.7 27 100-126 2-28 (198)
164 2jeo_A Uridine-cytidine kinase 98.5 6.6E-08 2.2E-12 83.3 3.6 37 91-127 14-50 (245)
165 3sop_A Neuronal-specific septi 98.5 5.7E-08 2E-12 85.2 3.1 37 104-141 4-40 (270)
166 1gvn_B Zeta; postsegregational 98.5 2.3E-07 7.7E-12 82.1 6.7 42 99-143 30-71 (287)
167 2axn_A 6-phosphofructo-2-kinas 98.4 1.5E-07 5.2E-12 89.9 5.8 118 100-217 33-165 (520)
168 2f1r_A Molybdopterin-guanine d 98.4 4.9E-08 1.7E-12 79.9 1.6 39 103-142 3-44 (171)
169 2cvh_A DNA repair and recombin 98.4 3.6E-07 1.2E-11 76.4 6.7 40 98-140 16-55 (220)
170 2jaq_A Deoxyguanosine kinase; 98.4 2.6E-07 9E-12 76.3 5.5 24 104-127 2-25 (205)
171 2kjq_A DNAA-related protein; s 98.4 3.6E-07 1.2E-11 72.9 5.6 40 101-142 35-76 (149)
172 2pbr_A DTMP kinase, thymidylat 98.4 5.1E-08 1.7E-12 80.1 0.6 23 104-126 2-24 (195)
173 2i3b_A HCR-ntpase, human cance 98.4 6.1E-08 2.1E-12 80.6 0.9 37 102-141 1-37 (189)
174 1lw7_A Transcriptional regulat 98.4 1.8E-07 6.1E-12 85.4 3.9 45 92-137 158-208 (365)
175 1pzn_A RAD51, DNA repair and r 98.4 7.2E-07 2.5E-11 81.0 7.8 46 96-141 125-176 (349)
176 1zak_A Adenylate kinase; ATP:A 98.4 1.1E-07 3.8E-12 80.3 2.2 36 101-141 4-39 (222)
177 1u0l_A Probable GTPase ENGC; p 98.4 1.1E-07 3.9E-12 84.5 2.3 45 97-142 164-211 (301)
178 3dl0_A Adenylate kinase; phosp 98.4 1.5E-07 5.2E-12 79.0 2.9 33 104-141 2-34 (216)
179 2w0m_A SSO2452; RECA, SSPF, un 98.3 1.5E-06 5.3E-11 72.9 8.7 38 98-136 19-56 (235)
180 2ze6_A Isopentenyl transferase 98.3 9.3E-07 3.2E-11 76.6 7.4 34 103-141 2-35 (253)
181 3fb4_A Adenylate kinase; psych 98.3 1.1E-07 3.6E-12 79.9 1.3 33 104-141 2-34 (216)
182 3be4_A Adenylate kinase; malar 98.3 2.9E-07 9.8E-12 77.7 3.9 36 101-141 4-39 (217)
183 2oap_1 GSPE-2, type II secreti 98.3 2.2E-07 7.5E-12 88.6 3.0 44 96-140 254-297 (511)
184 2grj_A Dephospho-COA kinase; T 98.3 3.8E-07 1.3E-11 75.9 4.0 36 101-141 11-46 (192)
185 3asz_A Uridine kinase; cytidin 98.3 3.3E-07 1.1E-11 76.6 3.3 40 99-141 3-42 (211)
186 3tlx_A Adenylate kinase 2; str 98.3 2.7E-07 9.2E-12 79.5 2.7 37 100-141 27-63 (243)
187 1ls1_A Signal recognition part 98.3 3.5E-06 1.2E-10 74.7 9.5 57 83-142 78-137 (295)
188 1nlf_A Regulatory protein REPA 98.3 3.5E-06 1.2E-10 73.7 9.4 28 99-126 27-54 (279)
189 2xb4_A Adenylate kinase; ATP-b 98.2 1.6E-06 5.5E-11 73.4 7.0 33 104-141 2-34 (223)
190 1pui_A ENGB, probable GTP-bind 98.2 1.6E-07 5.5E-12 78.0 0.7 54 82-135 4-63 (210)
191 1rz3_A Hypothetical protein rb 98.2 4.5E-07 1.5E-11 75.6 3.3 40 98-138 18-57 (201)
192 2x8a_A Nuclear valosin-contain 98.2 1.5E-06 5E-11 76.3 6.7 43 95-142 39-81 (274)
193 2yv5_A YJEQ protein; hydrolase 98.2 4.4E-07 1.5E-11 80.8 3.1 44 97-142 160-206 (302)
194 1ak2_A Adenylate kinase isoenz 98.2 1.8E-07 6.1E-12 79.9 0.0 36 101-141 15-50 (233)
195 1t9h_A YLOQ, probable GTPase E 98.2 2.1E-07 7.3E-12 83.0 0.5 44 97-141 168-214 (307)
196 1cr0_A DNA primase/helicase; R 98.2 4E-07 1.4E-11 80.3 2.3 47 92-139 25-73 (296)
197 1aky_A Adenylate kinase; ATP:A 98.2 9.9E-07 3.4E-11 74.3 4.3 37 100-141 2-38 (220)
198 1n0w_A DNA repair protein RAD5 98.2 1.3E-06 4.5E-11 74.1 4.8 42 98-140 20-68 (243)
199 3ney_A 55 kDa erythrocyte memb 98.2 1.5E-06 5.2E-11 72.6 5.0 35 93-127 10-44 (197)
200 3kta_A Chromosome segregation 98.2 1.5E-06 5.3E-11 70.7 5.0 43 82-126 7-50 (182)
201 3thx_A DNA mismatch repair pro 98.2 2.9E-06 9.8E-11 86.1 8.0 29 94-122 654-682 (934)
202 3szr_A Interferon-induced GTP- 98.2 2.7E-07 9.3E-12 89.8 0.3 42 96-141 42-84 (608)
203 3thx_B DNA mismatch repair pro 98.1 2.2E-06 7.5E-11 86.8 6.2 32 94-125 665-696 (918)
204 2f6r_A COA synthase, bifunctio 98.1 7.5E-06 2.6E-10 71.9 8.9 36 100-141 73-108 (281)
205 2vp4_A Deoxynucleoside kinase; 98.1 9.2E-07 3.1E-11 75.3 2.9 42 95-141 13-54 (230)
206 2qt1_A Nicotinamide riboside k 98.1 1.8E-06 6.1E-11 72.0 4.5 41 97-141 16-56 (207)
207 1ewq_A DNA mismatch repair pro 98.1 1.1E-06 3.7E-11 87.5 3.6 33 102-134 576-608 (765)
208 3ec2_A DNA replication protein 98.1 6.2E-07 2.1E-11 73.1 1.5 31 96-126 32-62 (180)
209 2bbw_A Adenylate kinase 4, AK4 98.1 2.5E-07 8.5E-12 79.5 -1.0 37 101-138 26-65 (246)
210 2qag_B Septin-6, protein NEDD5 98.1 8E-07 2.7E-11 82.6 2.2 34 93-126 31-66 (427)
211 3a8t_A Adenylate isopentenyltr 98.1 1.2E-05 3.9E-10 72.5 9.5 37 100-141 38-74 (339)
212 2rcn_A Probable GTPase ENGC; Y 98.1 1.5E-06 5.2E-11 79.0 3.8 39 100-139 213-253 (358)
213 3v9p_A DTMP kinase, thymidylat 98.1 1.1E-06 3.8E-11 75.0 2.7 29 99-127 22-50 (227)
214 3sr0_A Adenylate kinase; phosp 98.1 5.1E-06 1.8E-10 69.8 6.2 34 104-142 2-36 (206)
215 1zd8_A GTP:AMP phosphotransfer 98.0 2E-06 6.8E-11 72.9 3.2 37 100-141 5-41 (227)
216 1nij_A Hypothetical protein YJ 98.0 1.4E-06 4.9E-11 78.0 2.1 41 102-142 4-51 (318)
217 3cm0_A Adenylate kinase; ATP-b 98.0 1.9E-06 6.5E-11 70.3 2.4 37 100-141 2-38 (186)
218 1ixz_A ATP-dependent metallopr 98.0 4.5E-06 1.5E-10 71.8 4.6 43 95-142 44-86 (254)
219 1jjv_A Dephospho-COA kinase; P 98.0 2.3E-06 7.8E-11 71.2 2.6 33 103-141 3-35 (206)
220 1bif_A 6-phosphofructo-2-kinas 98.0 5.1E-06 1.8E-10 78.2 5.2 44 100-143 37-80 (469)
221 3lda_A DNA repair protein RAD5 98.0 8.1E-06 2.8E-10 75.4 6.2 42 98-140 174-222 (400)
222 3lv8_A DTMP kinase, thymidylat 98.0 6.6E-06 2.3E-10 70.6 5.2 30 101-130 26-55 (236)
223 4edh_A DTMP kinase, thymidylat 98.0 5.9E-06 2E-10 69.8 4.7 36 100-135 4-39 (213)
224 1iy2_A ATP-dependent metallopr 98.0 6E-06 2.1E-10 72.1 4.8 43 95-142 68-110 (278)
225 1zu4_A FTSY; GTPase, signal re 98.0 4.4E-06 1.5E-10 75.0 3.9 47 94-141 97-143 (320)
226 3tqc_A Pantothenate kinase; bi 97.9 8.1E-06 2.8E-10 73.2 4.2 33 101-133 91-124 (321)
227 1e4v_A Adenylate kinase; trans 97.9 1.9E-05 6.6E-10 66.0 6.2 33 104-141 2-34 (214)
228 3qkt_A DNA double-strand break 97.9 0.00017 5.9E-09 64.8 12.8 44 180-225 247-297 (339)
229 1w1w_A Structural maintenance 97.9 1E-05 3.4E-10 75.3 4.7 45 81-126 6-50 (430)
230 1uf9_A TT1252 protein; P-loop, 97.8 7.3E-06 2.5E-10 67.5 3.1 35 101-141 7-41 (203)
231 1oix_A RAS-related protein RAB 97.8 1.3E-05 4.5E-10 65.7 4.4 40 103-142 30-79 (191)
232 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 1.8E-05 6.1E-10 72.9 5.1 40 98-138 16-67 (392)
233 4hlc_A DTMP kinase, thymidylat 97.8 0.00012 3.9E-09 61.4 9.6 32 102-134 2-33 (205)
234 2if2_A Dephospho-COA kinase; a 97.8 7.6E-06 2.6E-10 67.8 2.3 32 104-141 3-34 (204)
235 1vht_A Dephospho-COA kinase; s 97.8 9.6E-06 3.3E-10 68.0 2.9 35 101-141 3-37 (218)
236 2dr3_A UPF0273 protein PH0284; 97.8 1.6E-05 5.5E-10 67.3 4.1 43 98-140 19-61 (247)
237 3gmt_A Adenylate kinase; ssgci 97.8 2.5E-05 8.4E-10 66.7 5.1 35 102-141 8-42 (230)
238 1uj2_A Uridine-cytidine kinase 97.7 1.9E-05 6.6E-10 67.9 4.4 44 100-143 20-68 (252)
239 2px0_A Flagellar biosynthesis 97.7 1.3E-05 4.6E-10 71.0 3.1 41 100-141 103-145 (296)
240 1svm_A Large T antigen; AAA+ f 97.7 1.4E-05 4.7E-10 73.3 3.1 32 95-126 162-193 (377)
241 1kht_A Adenylate kinase; phosp 97.7 1.7E-05 5.8E-10 64.5 3.3 39 101-139 2-40 (192)
242 3kl4_A SRP54, signal recogniti 97.7 0.00012 4.2E-09 68.1 9.2 40 101-141 96-136 (433)
243 2qnr_A Septin-2, protein NEDD5 97.7 1.2E-05 4E-10 71.5 2.2 35 105-141 21-56 (301)
244 1odf_A YGR205W, hypothetical 3 97.7 2.1E-05 7.3E-10 69.5 3.6 28 100-127 29-56 (290)
245 2v54_A DTMP kinase, thymidylat 97.7 2.6E-05 8.8E-10 64.3 3.9 27 100-126 2-28 (204)
246 2ffh_A Protein (FFH); SRP54, s 97.7 0.00021 7.2E-09 66.4 10.2 43 96-141 94-136 (425)
247 2www_A Methylmalonic aciduria 97.6 2.3E-05 7.8E-10 71.1 3.4 40 100-140 72-111 (349)
248 1j8m_F SRP54, signal recogniti 97.6 0.00011 3.9E-09 65.0 7.8 44 95-140 92-136 (297)
249 2f9l_A RAB11B, member RAS onco 97.6 3.3E-05 1.1E-09 63.5 3.9 39 103-141 6-54 (199)
250 2qag_C Septin-7; cell cycle, c 97.6 2.9E-05 1E-09 72.1 3.5 42 80-127 10-56 (418)
251 1udx_A The GTP-binding protein 97.6 1.9E-05 6.4E-10 73.3 1.6 44 95-138 150-203 (416)
252 2p67_A LAO/AO transport system 97.6 3.7E-05 1.3E-09 69.4 3.5 45 95-140 49-93 (341)
253 2o8b_B DNA mismatch repair pro 97.5 6.2E-05 2.1E-09 77.2 5.4 46 80-126 749-812 (1022)
254 1sxj_E Activator 1 40 kDa subu 97.5 3.3E-05 1.1E-09 69.3 2.7 37 105-141 39-75 (354)
255 3k1j_A LON protease, ATP-depen 97.5 4.5E-05 1.5E-09 74.0 3.7 47 96-142 54-100 (604)
256 3ice_A Transcription terminati 97.5 3.5E-05 1.2E-09 70.6 2.7 49 79-127 131-199 (422)
257 1lv7_A FTSH; alpha/beta domain 97.5 0.00021 7.1E-09 61.3 7.3 38 102-142 45-82 (257)
258 1a7j_A Phosphoribulokinase; tr 97.5 2.8E-05 9.4E-10 68.7 1.6 42 101-142 4-45 (290)
259 3hr8_A Protein RECA; alpha and 97.5 7E-05 2.4E-09 68.0 4.2 43 99-141 58-100 (356)
260 1wb9_A DNA mismatch repair pro 97.5 5.3E-05 1.8E-09 75.8 3.6 32 94-126 600-631 (800)
261 2o5v_A DNA replication and rep 97.5 5.7E-05 1.9E-09 68.7 3.5 45 181-227 265-319 (359)
262 3dm5_A SRP54, signal recogniti 97.4 0.00031 1.1E-08 65.5 8.2 42 101-142 99-140 (443)
263 3m6a_A ATP-dependent protease 97.4 5.8E-05 2E-09 72.4 3.2 41 96-138 103-143 (543)
264 3crm_A TRNA delta(2)-isopenten 97.4 0.00043 1.5E-08 62.0 8.4 35 102-141 5-39 (323)
265 2z0h_A DTMP kinase, thymidylat 97.4 0.00011 3.6E-09 60.1 4.0 24 104-127 2-25 (197)
266 1ypw_A Transitional endoplasmi 97.4 0.00015 5.1E-09 72.7 5.6 44 96-142 232-275 (806)
267 2dhr_A FTSH; AAA+ protein, hex 97.4 0.00012 3.9E-09 69.6 4.5 43 95-142 59-101 (499)
268 1in4_A RUVB, holliday junction 97.4 7.5E-05 2.6E-09 67.0 2.9 25 103-127 52-76 (334)
269 1np6_A Molybdopterin-guanine d 97.3 0.00017 5.7E-09 58.9 4.1 39 102-140 6-46 (174)
270 1gtv_A TMK, thymidylate kinase 97.3 5.1E-05 1.8E-09 63.0 1.0 24 104-127 2-25 (214)
271 2ga8_A Hypothetical 39.9 kDa p 97.3 8.3E-05 2.9E-09 67.4 2.4 32 96-127 16-49 (359)
272 3hjn_A DTMP kinase, thymidylat 97.3 0.0011 3.8E-08 54.9 9.0 33 104-136 2-34 (197)
273 2zr9_A Protein RECA, recombina 97.3 0.00016 5.6E-09 65.4 4.0 43 98-140 57-99 (349)
274 3cf0_A Transitional endoplasmi 97.2 0.00013 4.4E-09 64.4 2.9 42 97-141 44-85 (301)
275 1ex7_A Guanylate kinase; subst 97.2 0.00025 8.6E-09 58.5 4.3 23 104-126 3-25 (186)
276 3bos_A Putative DNA replicatio 97.2 0.00023 7.8E-09 59.6 4.2 41 101-141 51-91 (242)
277 3d3q_A TRNA delta(2)-isopenten 97.2 0.0002 6.8E-09 64.6 3.6 34 103-141 8-41 (340)
278 2gj8_A MNME, tRNA modification 97.2 0.00019 6.6E-09 57.6 3.2 27 100-126 2-28 (172)
279 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00028 9.4E-09 55.9 3.7 30 96-126 18-47 (149)
280 1xjc_A MOBB protein homolog; s 97.1 0.0004 1.4E-08 56.3 4.4 26 102-127 4-29 (169)
281 2z43_A DNA repair and recombin 97.1 0.00038 1.3E-08 62.1 4.6 43 98-140 103-151 (324)
282 4fcw_A Chaperone protein CLPB; 97.1 0.00037 1.3E-08 61.1 4.5 41 101-141 46-86 (311)
283 1v5w_A DMC1, meiotic recombina 97.1 0.00056 1.9E-08 61.6 5.5 43 98-140 118-166 (343)
284 3foz_A TRNA delta(2)-isopenten 97.0 0.0016 5.3E-08 58.0 8.0 27 101-127 9-35 (316)
285 2w58_A DNAI, primosome compone 97.0 0.00054 1.8E-08 56.3 4.5 26 103-128 55-80 (202)
286 3exa_A TRNA delta(2)-isopenten 97.0 0.00044 1.5E-08 61.6 4.1 36 101-141 2-37 (322)
287 2qtf_A Protein HFLX, GTP-bindi 97.0 0.00047 1.6E-08 62.8 4.3 38 104-141 181-228 (364)
288 1mky_A Probable GTP-binding pr 97.0 0.00057 1.9E-08 63.6 4.8 39 103-141 181-230 (439)
289 2vf7_A UVRA2, excinuclease ABC 97.0 0.00035 1.2E-08 70.1 3.5 40 81-120 15-54 (842)
290 2ohf_A Protein OLA1, GTP-bindi 97.0 0.00042 1.4E-08 63.8 3.6 40 98-138 18-68 (396)
291 4i1u_A Dephospho-COA kinase; s 96.9 0.00029 1E-08 59.2 2.2 33 103-141 10-42 (210)
292 1jbk_A CLPB protein; beta barr 96.9 0.00071 2.4E-08 54.1 4.5 28 100-127 41-68 (195)
293 3ld9_A DTMP kinase, thymidylat 96.9 0.0005 1.7E-08 58.3 3.6 32 97-128 16-47 (223)
294 2ocp_A DGK, deoxyguanosine kin 96.9 0.00049 1.7E-08 58.5 3.5 26 101-126 1-26 (241)
295 2xxa_A Signal recognition part 96.9 0.0036 1.2E-07 58.2 9.7 43 100-142 98-141 (433)
296 4b4t_M 26S protease regulatory 96.9 0.0016 5.4E-08 60.6 6.9 43 97-142 210-252 (434)
297 2r6f_A Excinuclease ABC subuni 96.9 0.00045 1.5E-08 70.0 3.4 40 80-119 22-61 (972)
298 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.00088 3E-08 57.1 4.8 40 99-141 36-75 (262)
299 3h4m_A Proteasome-activating n 96.9 0.0019 6.5E-08 55.9 7.0 40 99-141 48-87 (285)
300 2ygr_A Uvrabc system protein A 96.9 0.00049 1.7E-08 69.9 3.5 41 80-120 24-64 (993)
301 4b4t_K 26S protease regulatory 96.9 0.0018 6.2E-08 60.1 7.1 43 97-142 201-243 (428)
302 1ega_A Protein (GTP-binding pr 96.9 0.00044 1.5E-08 61.1 2.8 26 101-126 7-32 (301)
303 2wji_A Ferrous iron transport 96.9 0.00051 1.8E-08 54.5 3.0 24 103-126 4-27 (165)
304 1sxj_C Activator 1 40 kDa subu 96.9 0.0003 1E-08 62.9 1.7 32 96-127 38-71 (340)
305 2qmh_A HPR kinase/phosphorylas 96.8 0.00068 2.3E-08 56.5 3.6 27 100-126 32-58 (205)
306 1p5z_B DCK, deoxycytidine kina 96.8 0.00033 1.1E-08 60.4 1.8 28 99-126 21-48 (263)
307 3n70_A Transport activator; si 96.8 0.00074 2.5E-08 52.8 3.7 41 100-141 22-62 (145)
308 2v1u_A Cell division control p 96.8 0.0032 1.1E-07 56.4 8.3 40 100-139 42-87 (387)
309 4b4t_L 26S protease subunit RP 96.8 0.0019 6.6E-08 60.1 7.0 43 97-142 210-252 (437)
310 4b4t_J 26S protease regulatory 96.8 0.0016 5.5E-08 59.9 6.4 42 98-142 178-219 (405)
311 3pih_A Uvrabc system protein A 96.8 0.00046 1.6E-08 69.9 2.8 38 82-119 4-41 (916)
312 1fnn_A CDC6P, cell division co 96.8 0.0011 3.9E-08 59.5 5.1 40 100-139 40-82 (389)
313 1u94_A RECA protein, recombina 96.8 0.00087 3E-08 60.8 4.2 42 99-140 60-101 (356)
314 3b9p_A CG5977-PA, isoform A; A 96.8 0.00071 2.4E-08 59.0 3.5 39 100-141 52-90 (297)
315 2p65_A Hypothetical protein PF 96.8 0.00095 3.2E-08 53.3 4.0 28 100-127 41-68 (187)
316 4ad8_A DNA repair protein RECN 96.8 0.00044 1.5E-08 65.7 2.2 42 81-125 42-83 (517)
317 2qby_A CDC6 homolog 1, cell di 96.7 0.00065 2.2E-08 60.9 3.1 40 100-139 43-85 (386)
318 2ce7_A Cell division protein F 96.7 0.00093 3.2E-08 63.0 4.2 40 97-141 46-85 (476)
319 3qks_A DNA double-strand break 96.7 0.00093 3.2E-08 55.5 3.7 30 96-126 18-47 (203)
320 1l8q_A Chromosomal replication 96.7 0.0008 2.7E-08 59.6 3.5 38 101-138 36-73 (324)
321 4b4t_I 26S protease regulatory 96.7 0.0029 9.9E-08 58.6 7.2 43 97-142 211-253 (437)
322 4tmk_A Protein (thymidylate ki 96.7 0.0008 2.7E-08 56.6 3.2 30 101-130 2-31 (213)
323 3t34_A Dynamin-related protein 96.7 0.00072 2.4E-08 61.1 3.0 35 96-134 31-67 (360)
324 3syl_A Protein CBBX; photosynt 96.7 0.0011 3.9E-08 57.9 4.3 42 100-141 65-110 (309)
325 2orw_A Thymidine kinase; TMTK, 96.7 0.0012 4.1E-08 54.1 4.1 26 101-126 2-27 (184)
326 3tmk_A Thymidylate kinase; pho 96.7 0.00089 3.1E-08 56.4 3.3 28 100-127 3-30 (216)
327 4b4t_H 26S protease regulatory 96.7 0.0022 7.7E-08 59.9 6.3 43 97-142 238-280 (467)
328 2wjg_A FEOB, ferrous iron tran 96.7 0.0009 3.1E-08 53.8 3.1 23 103-125 8-30 (188)
329 3p32_A Probable GTPase RV1496/ 96.6 0.0015 5E-08 59.1 4.6 41 100-140 77-117 (355)
330 2dy1_A Elongation factor G; tr 96.6 0.0008 2.7E-08 66.0 2.9 39 96-134 3-42 (665)
331 2zej_A Dardarin, leucine-rich 96.6 0.00075 2.6E-08 54.5 2.3 22 104-125 4-25 (184)
332 3t15_A Ribulose bisphosphate c 96.6 0.0011 3.7E-08 58.3 3.3 39 99-140 33-71 (293)
333 4ag6_A VIRB4 ATPase, type IV s 96.6 0.0015 5.1E-08 59.7 4.2 37 101-137 34-70 (392)
334 3bh0_A DNAB-like replicative h 96.6 0.0021 7E-08 57.2 5.0 42 98-139 64-105 (315)
335 3eph_A TRNA isopentenyltransfe 96.5 0.0013 4.5E-08 60.5 3.6 26 102-127 2-27 (409)
336 1g41_A Heat shock protein HSLU 96.5 0.0037 1.3E-07 58.3 6.7 37 102-141 50-86 (444)
337 1yrb_A ATP(GTP)binding protein 96.5 0.0024 8.2E-08 54.4 5.1 42 98-140 10-51 (262)
338 2v3c_C SRP54, signal recogniti 96.5 0.0008 2.7E-08 62.6 1.9 42 101-142 98-139 (432)
339 3tqf_A HPR(Ser) kinase; transf 96.5 0.0021 7.2E-08 52.3 4.1 25 101-125 15-39 (181)
340 2r6a_A DNAB helicase, replicat 96.5 0.002 7E-08 60.1 4.6 44 96-139 197-241 (454)
341 1f6b_A SAR1; gtpases, N-termin 96.5 0.0017 5.7E-08 53.2 3.4 28 96-124 20-47 (198)
342 1ofh_A ATP-dependent HSL prote 96.5 0.0019 6.6E-08 56.2 4.0 38 101-141 49-86 (310)
343 3lxx_A GTPase IMAP family memb 96.4 0.0015 5.3E-08 55.2 3.2 25 102-126 29-53 (239)
344 2j37_W Signal recognition part 96.4 0.0019 6.7E-08 61.2 4.2 43 100-142 99-141 (504)
345 1m2o_B GTP-binding protein SAR 96.4 0.0028 9.5E-08 51.4 4.4 28 96-124 18-45 (190)
346 2bjv_A PSP operon transcriptio 96.4 0.0028 9.5E-08 54.4 4.6 41 101-141 28-68 (265)
347 3eie_A Vacuolar protein sortin 96.4 0.0039 1.3E-07 55.3 5.6 39 100-141 49-87 (322)
348 1njg_A DNA polymerase III subu 96.4 0.0019 6.4E-08 53.4 3.3 25 103-127 46-70 (250)
349 2i1q_A DNA repair and recombin 96.4 0.0024 8.2E-08 56.7 4.1 28 98-125 94-121 (322)
350 1jal_A YCHF protein; nucleotid 96.4 0.003 1E-07 57.4 4.7 23 102-124 2-24 (363)
351 3ihw_A Centg3; RAS, centaurin, 96.3 0.0039 1.3E-07 50.3 5.0 39 103-141 21-67 (184)
352 2b8t_A Thymidine kinase; deoxy 96.3 0.003 1E-07 53.4 4.4 37 100-136 10-46 (223)
353 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0021 7.1E-08 57.3 3.6 40 100-141 43-82 (322)
354 3hws_A ATP-dependent CLP prote 96.3 0.0019 6.6E-08 58.2 3.4 35 101-138 50-84 (363)
355 2wsm_A Hydrogenase expression/ 96.3 0.0032 1.1E-07 52.1 4.5 26 101-126 29-54 (221)
356 3uk6_A RUVB-like 2; hexameric 96.3 0.003 1E-07 56.6 4.5 39 101-140 69-107 (368)
357 1ypw_A Transitional endoplasmi 96.3 0.0012 4E-08 66.2 1.9 44 96-142 505-548 (806)
358 3k53_A Ferrous iron transport 96.3 0.0019 6.3E-08 55.9 3.0 24 103-126 4-27 (271)
359 1d2n_A N-ethylmaleimide-sensit 96.3 0.0023 7.9E-08 55.2 3.5 36 99-137 61-96 (272)
360 1z2a_A RAS-related protein RAB 96.3 0.0022 7.5E-08 50.1 3.1 24 103-126 6-29 (168)
361 2lkc_A Translation initiation 96.3 0.0027 9.3E-08 50.3 3.7 26 100-125 6-31 (178)
362 1xx6_A Thymidine kinase; NESG, 96.3 0.0038 1.3E-07 51.5 4.5 37 100-136 6-42 (191)
363 1kao_A RAP2A; GTP-binding prot 96.3 0.0024 8.3E-08 49.7 3.2 24 103-126 4-27 (167)
364 1tue_A Replication protein E1; 96.3 0.0019 6.6E-08 54.0 2.7 28 99-126 55-82 (212)
365 2ged_A SR-beta, signal recogni 96.3 0.003 1E-07 50.9 3.8 26 101-126 47-72 (193)
366 3d8b_A Fidgetin-like protein 1 96.3 0.0031 1.1E-07 56.9 4.3 39 100-141 115-153 (357)
367 3cf2_A TER ATPase, transitiona 96.2 0.0041 1.4E-07 62.1 5.4 43 96-141 232-274 (806)
368 2ce2_X GTPase HRAS; signaling 96.2 0.0023 7.8E-08 49.7 2.9 23 104-126 5-27 (166)
369 2dyk_A GTP-binding protein; GT 96.2 0.0026 8.8E-08 49.4 3.2 23 104-126 3-25 (161)
370 1um8_A ATP-dependent CLP prote 96.2 0.0032 1.1E-07 57.0 4.2 38 101-141 71-108 (376)
371 2qgz_A Helicase loader, putati 96.2 0.0035 1.2E-07 55.5 4.3 26 102-127 152-177 (308)
372 1xp8_A RECA protein, recombina 96.2 0.0031 1.1E-07 57.4 4.0 42 99-140 71-112 (366)
373 2r62_A Cell division protease 96.2 0.00095 3.2E-08 57.3 0.5 27 102-128 44-70 (268)
374 1u8z_A RAS-related protein RAL 96.2 0.0027 9.1E-08 49.5 3.1 24 103-126 5-28 (168)
375 2erx_A GTP-binding protein DI- 96.2 0.0026 8.9E-08 49.8 2.9 23 103-125 4-26 (172)
376 2c9o_A RUVB-like 1; hexameric 96.2 0.0041 1.4E-07 58.1 4.7 40 101-141 62-101 (456)
377 4a1f_A DNAB helicase, replicat 96.2 0.0039 1.3E-07 56.1 4.4 42 98-139 42-83 (338)
378 1ek0_A Protein (GTP-binding pr 96.2 0.0029 9.8E-08 49.5 3.1 23 104-126 5-27 (170)
379 2nzj_A GTP-binding protein REM 96.1 0.0025 8.6E-08 50.2 2.8 24 103-126 5-28 (175)
380 1z0j_A RAB-22, RAS-related pro 96.1 0.003 1E-07 49.5 3.2 24 103-126 7-30 (170)
381 1ko7_A HPR kinase/phosphatase; 96.1 0.0045 1.5E-07 55.1 4.6 25 101-125 143-167 (314)
382 1z08_A RAS-related protein RAB 96.1 0.003 1E-07 49.5 3.1 24 103-126 7-30 (170)
383 1ky3_A GTP-binding protein YPT 96.1 0.0031 1E-07 50.0 3.2 24 103-126 9-32 (182)
384 1c1y_A RAS-related protein RAP 96.1 0.0031 1.1E-07 49.2 3.1 23 103-125 4-26 (167)
385 1wms_A RAB-9, RAB9, RAS-relate 96.1 0.0031 1.1E-07 49.8 3.2 24 103-126 8-31 (177)
386 1g16_A RAS-related protein SEC 96.1 0.0029 9.9E-08 49.5 2.9 23 104-126 5-27 (170)
387 1upt_A ARL1, ADP-ribosylation 96.1 0.0043 1.5E-07 48.7 3.8 25 101-125 6-30 (171)
388 3q85_A GTP-binding protein REM 96.1 0.0028 9.5E-08 49.7 2.7 22 104-125 4-25 (169)
389 2fn4_A P23, RAS-related protei 96.1 0.0032 1.1E-07 49.8 3.0 23 103-125 10-32 (181)
390 3lxw_A GTPase IMAP family memb 96.1 0.0029 9.9E-08 54.1 2.9 25 102-126 21-45 (247)
391 1r2q_A RAS-related protein RAB 96.0 0.0035 1.2E-07 49.0 3.1 23 103-125 7-29 (170)
392 2chg_A Replication factor C sm 96.0 0.0031 1E-07 51.5 2.9 23 104-126 40-62 (226)
393 3pfi_A Holliday junction ATP-d 96.0 0.0046 1.6E-07 54.9 4.1 35 102-139 55-89 (338)
394 2zts_A Putative uncharacterize 96.0 0.0038 1.3E-07 52.5 3.4 40 99-138 27-67 (251)
395 4dsu_A GTPase KRAS, isoform 2B 96.0 0.0036 1.2E-07 50.0 3.2 24 103-126 5-28 (189)
396 2qby_B CDC6 homolog 3, cell di 96.0 0.0038 1.3E-07 56.1 3.7 27 100-126 43-69 (384)
397 2z4s_A Chromosomal replication 96.0 0.0029 1E-07 58.8 3.0 38 102-139 130-169 (440)
398 3b1v_A Ferrous iron uptake tra 96.0 0.0032 1.1E-07 54.8 3.0 23 103-125 4-26 (272)
399 3q72_A GTP-binding protein RAD 96.0 0.0022 7.6E-08 50.2 1.8 23 104-126 4-26 (166)
400 3bc1_A RAS-related protein RAB 96.0 0.0038 1.3E-07 50.0 3.1 24 103-126 12-35 (195)
401 1svi_A GTP-binding protein YSX 96.0 0.005 1.7E-07 49.6 3.9 25 101-125 22-46 (195)
402 2hf9_A Probable hydrogenase ni 96.0 0.0062 2.1E-07 50.5 4.6 26 101-126 37-62 (226)
403 2zan_A Vacuolar protein sortin 96.0 0.0071 2.4E-07 56.3 5.2 40 100-141 165-204 (444)
404 2hxs_A RAB-26, RAS-related pro 95.9 0.004 1.4E-07 49.2 3.1 23 103-125 7-29 (178)
405 2oil_A CATX-8, RAS-related pro 95.9 0.004 1.4E-07 50.2 3.1 24 103-126 26-49 (193)
406 3vfd_A Spastin; ATPase, microt 95.9 0.0062 2.1E-07 55.4 4.7 39 100-141 146-184 (389)
407 3con_A GTPase NRAS; structural 95.9 0.0041 1.4E-07 50.0 3.1 24 103-126 22-45 (190)
408 3clv_A RAB5 protein, putative; 95.9 0.0055 1.9E-07 49.2 3.9 25 102-126 7-31 (208)
409 1r8s_A ADP-ribosylation factor 95.9 0.0044 1.5E-07 48.3 3.1 22 104-125 2-23 (164)
410 2dby_A GTP-binding protein; GD 95.9 0.0038 1.3E-07 56.8 3.1 22 104-125 3-24 (368)
411 1z0f_A RAB14, member RAS oncog 95.9 0.0043 1.5E-07 48.9 3.1 24 103-126 16-39 (179)
412 2g6b_A RAS-related protein RAB 95.9 0.0044 1.5E-07 49.1 3.1 24 103-126 11-34 (180)
413 2y8e_A RAB-protein 6, GH09086P 95.9 0.0041 1.4E-07 49.1 2.9 23 103-125 15-37 (179)
414 3e1y_E Eukaryotic peptide chai 95.9 0.003 1E-07 52.7 2.1 35 15-49 151-187 (204)
415 3pqc_A Probable GTP-binding pr 95.9 0.0061 2.1E-07 48.8 4.0 25 102-126 23-47 (195)
416 2qp9_X Vacuolar protein sortin 95.9 0.0038 1.3E-07 56.4 2.9 38 100-140 82-119 (355)
417 2a9k_A RAS-related protein RAL 95.9 0.0045 1.5E-07 49.2 3.1 24 103-126 19-42 (187)
418 2efe_B Small GTP-binding prote 95.9 0.0046 1.6E-07 49.0 3.1 24 103-126 13-36 (181)
419 1sxj_D Activator 1 41 kDa subu 95.9 0.0039 1.3E-07 55.4 2.9 24 104-127 60-83 (353)
420 3bwd_D RAC-like GTP-binding pr 95.9 0.0057 1.9E-07 48.5 3.6 26 101-126 7-32 (182)
421 3iby_A Ferrous iron transport 95.9 0.0041 1.4E-07 53.5 3.0 23 104-126 3-25 (256)
422 2cxx_A Probable GTP-binding pr 95.8 0.0035 1.2E-07 50.1 2.3 23 104-126 3-25 (190)
423 3llm_A ATP-dependent RNA helic 95.8 0.0035 1.2E-07 52.9 2.4 27 98-124 72-98 (235)
424 1nrj_B SR-beta, signal recogni 95.8 0.0059 2E-07 50.3 3.7 25 102-126 12-36 (218)
425 3t1o_A Gliding protein MGLA; G 95.8 0.0051 1.7E-07 49.4 3.2 25 103-127 15-39 (198)
426 2q6t_A DNAB replication FORK h 95.8 0.0066 2.3E-07 56.4 4.4 41 99-139 197-238 (444)
427 2bme_A RAB4A, RAS-related prot 95.8 0.0048 1.6E-07 49.2 2.9 24 103-126 11-34 (186)
428 3io5_A Recombination and repai 95.8 0.0053 1.8E-07 54.8 3.4 41 99-140 26-68 (333)
429 3tw8_B RAS-related protein RAB 95.8 0.0046 1.6E-07 48.8 2.8 23 103-125 10-32 (181)
430 2bov_A RAla, RAS-related prote 95.8 0.0051 1.7E-07 49.9 3.1 24 103-126 15-38 (206)
431 3iev_A GTP-binding protein ERA 95.8 0.0043 1.5E-07 54.8 2.8 26 101-126 9-34 (308)
432 1vg8_A RAS-related protein RAB 95.8 0.0053 1.8E-07 50.0 3.2 25 102-126 8-32 (207)
433 1m7b_A RND3/RHOE small GTP-bin 95.8 0.005 1.7E-07 49.4 2.9 24 103-126 8-31 (184)
434 2ius_A DNA translocase FTSK; n 95.8 0.0053 1.8E-07 58.3 3.5 29 96-124 161-189 (512)
435 3auy_A DNA double-strand break 95.8 0.0054 1.9E-07 55.6 3.5 29 95-124 19-47 (371)
436 2gf9_A RAS-related protein RAB 95.7 0.0054 1.9E-07 49.3 3.1 24 103-126 23-46 (189)
437 3kkq_A RAS-related protein M-R 95.7 0.0055 1.9E-07 48.8 3.1 25 102-126 18-42 (183)
438 1wf3_A GTP-binding protein; GT 95.7 0.0051 1.8E-07 54.3 3.1 22 104-125 9-30 (301)
439 2r44_A Uncharacterized protein 95.7 0.0046 1.6E-07 54.8 2.8 26 102-127 46-71 (331)
440 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.0057 2E-07 48.6 3.1 23 103-125 6-28 (186)
441 3e2i_A Thymidine kinase; Zn-bi 95.7 0.0093 3.2E-07 50.2 4.4 27 100-126 26-53 (219)
442 3tkl_A RAS-related protein RAB 95.7 0.0058 2E-07 49.2 3.1 24 103-126 17-40 (196)
443 1fzq_A ADP-ribosylation factor 95.7 0.0063 2.2E-07 48.8 3.3 25 101-125 15-39 (181)
444 2xtp_A GTPase IMAP family memb 95.7 0.006 2.1E-07 52.0 3.4 25 102-126 22-46 (260)
445 2fg5_A RAB-22B, RAS-related pr 95.7 0.0056 1.9E-07 49.5 3.0 24 103-126 24-47 (192)
446 2j9r_A Thymidine kinase; TK1, 95.7 0.0097 3.3E-07 50.0 4.5 38 99-136 25-62 (214)
447 1z06_A RAS-related protein RAB 95.7 0.0061 2.1E-07 49.0 3.2 23 103-125 21-43 (189)
448 2vhj_A Ntpase P4, P4; non- hyd 95.7 0.0054 1.8E-07 54.8 3.0 27 99-125 120-146 (331)
449 1c9k_A COBU, adenosylcobinamid 95.7 0.0075 2.6E-07 49.3 3.7 32 104-139 1-32 (180)
450 1moz_A ARL1, ADP-ribosylation 95.7 0.0046 1.6E-07 49.2 2.3 25 100-124 16-40 (183)
451 2iwr_A Centaurin gamma 1; ANK 95.7 0.0058 2E-07 48.5 2.9 25 102-126 7-31 (178)
452 1sxj_A Activator 1 95 kDa subu 95.6 0.009 3.1E-07 56.6 4.6 38 101-141 76-113 (516)
453 2gf0_A GTP-binding protein DI- 95.6 0.0079 2.7E-07 48.5 3.7 24 102-125 8-31 (199)
454 3t5g_A GTP-binding protein RHE 95.6 0.006 2.1E-07 48.5 2.9 23 103-125 7-29 (181)
455 3oes_A GTPase rhebl1; small GT 95.6 0.0059 2E-07 49.7 2.9 27 100-126 22-48 (201)
456 2p5s_A RAS and EF-hand domain 95.6 0.0076 2.6E-07 49.0 3.6 30 97-126 23-52 (199)
457 3a1s_A Iron(II) transport prot 95.6 0.0062 2.1E-07 52.4 3.2 24 103-126 6-29 (258)
458 3i8s_A Ferrous iron transport 95.6 0.0058 2E-07 53.0 3.0 24 103-126 4-27 (274)
459 1zbd_A Rabphilin-3A; G protein 95.6 0.0061 2.1E-07 49.6 2.9 24 103-126 9-32 (203)
460 3dz8_A RAS-related protein RAB 95.6 0.0063 2.2E-07 49.1 2.9 24 103-126 24-47 (191)
461 2cjw_A GTP-binding protein GEM 95.6 0.0068 2.3E-07 49.3 3.1 23 103-125 7-29 (192)
462 2atv_A RERG, RAS-like estrogen 95.6 0.0088 3E-07 48.4 3.8 25 101-125 27-51 (196)
463 1ksh_A ARF-like protein 2; sma 95.6 0.0066 2.3E-07 48.5 3.0 27 100-126 16-42 (186)
464 1x3s_A RAS-related protein RAB 95.6 0.0069 2.3E-07 48.6 3.1 24 103-126 16-39 (195)
465 2a5j_A RAS-related protein RAB 95.6 0.0069 2.4E-07 48.9 3.1 24 103-126 22-45 (191)
466 1hqc_A RUVB; extended AAA-ATPa 95.6 0.0058 2E-07 53.7 2.9 36 101-139 37-72 (324)
467 1zd9_A ADP-ribosylation factor 95.6 0.0069 2.4E-07 48.8 3.1 25 102-126 22-46 (188)
468 1ojl_A Transcriptional regulat 95.6 0.0079 2.7E-07 53.1 3.7 42 100-141 23-64 (304)
469 2e87_A Hypothetical protein PH 95.6 0.0053 1.8E-07 55.4 2.6 27 100-126 165-191 (357)
470 2bcg_Y Protein YP2, GTP-bindin 95.6 0.0065 2.2E-07 49.6 2.9 24 103-126 9-32 (206)
471 3co5_A Putative two-component 95.5 0.0031 1.1E-07 49.1 0.9 26 101-126 26-51 (143)
472 3bgw_A DNAB-like replicative h 95.5 0.01 3.5E-07 55.3 4.4 41 99-139 194-234 (444)
473 3reg_A RHO-like small GTPase; 95.5 0.0073 2.5E-07 48.8 3.1 25 102-126 23-47 (194)
474 2ew1_A RAS-related protein RAB 95.5 0.0067 2.3E-07 49.8 2.9 24 103-126 27-50 (201)
475 3cph_A RAS-related protein SEC 95.5 0.0073 2.5E-07 49.3 3.1 26 101-126 19-44 (213)
476 1zj6_A ADP-ribosylation factor 95.5 0.0084 2.9E-07 48.1 3.4 26 100-125 14-39 (187)
477 4dhe_A Probable GTP-binding pr 95.5 0.0039 1.3E-07 51.6 1.4 26 101-126 28-53 (223)
478 3t5d_A Septin-7; GTP-binding p 95.5 0.0067 2.3E-07 52.5 2.9 22 104-125 10-31 (274)
479 3pvs_A Replication-associated 95.5 0.0073 2.5E-07 56.3 3.3 25 103-127 51-75 (447)
480 2fv8_A H6, RHO-related GTP-bin 95.5 0.0075 2.6E-07 49.4 3.0 25 102-126 25-49 (207)
481 3c5c_A RAS-like protein 12; GD 95.5 0.0082 2.8E-07 48.4 3.2 24 102-125 21-44 (187)
482 3te6_A Regulatory protein SIR3 95.4 0.0077 2.6E-07 53.7 3.2 44 98-141 41-91 (318)
483 1jwy_B Dynamin A GTPase domain 95.4 0.0071 2.4E-07 53.0 3.0 23 104-126 26-48 (315)
484 2qag_A Septin-2, protein NEDD5 95.4 0.005 1.7E-07 55.8 2.0 46 80-126 16-61 (361)
485 3hu3_A Transitional endoplasmi 95.4 0.011 3.9E-07 55.7 4.5 40 99-141 235-274 (489)
486 1gwn_A RHO-related GTP-binding 95.4 0.0076 2.6E-07 49.6 2.9 25 102-126 28-52 (205)
487 2b6h_A ADP-ribosylation factor 95.4 0.01 3.4E-07 48.1 3.6 27 98-124 25-51 (192)
488 2fh5_B SR-beta, signal recogni 95.4 0.0094 3.2E-07 48.9 3.4 25 102-126 7-31 (214)
489 2o52_A RAS-related protein RAB 95.4 0.0071 2.4E-07 49.3 2.5 23 103-125 26-48 (200)
490 2qu8_A Putative nucleolar GTP- 95.4 0.0087 3E-07 49.9 3.1 24 102-125 29-52 (228)
491 3nbx_X ATPase RAVA; AAA+ ATPas 95.3 0.012 4.3E-07 55.6 4.5 28 99-126 38-65 (500)
492 2h17_A ADP-ribosylation factor 95.3 0.0081 2.8E-07 48.0 2.7 24 102-125 21-44 (181)
493 3cbq_A GTP-binding protein REM 95.3 0.0068 2.3E-07 49.4 2.3 23 103-125 24-46 (195)
494 2f7s_A C25KG, RAS-related prot 95.3 0.0083 2.8E-07 49.4 2.8 24 103-126 26-49 (217)
495 4bas_A ADP-ribosylation factor 95.3 0.0072 2.5E-07 48.7 2.4 26 101-126 16-41 (199)
496 3ch4_B Pmkase, phosphomevalona 95.3 0.011 3.8E-07 49.1 3.5 26 101-126 10-35 (202)
497 2fu5_C RAS-related protein RAB 95.3 0.0057 1.9E-07 48.7 1.6 23 103-125 9-31 (183)
498 2gco_A H9, RHO-related GTP-bin 95.3 0.0092 3.1E-07 48.6 2.9 24 103-126 26-49 (201)
499 1q57_A DNA primase/helicase; d 95.3 0.014 4.7E-07 55.1 4.5 41 99-139 239-280 (503)
500 2il1_A RAB12; G-protein, GDP, 95.3 0.009 3.1E-07 48.3 2.8 23 103-125 27-49 (192)
No 1
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.94 E-value=1.7e-26 Score=194.87 Aligned_cols=195 Identities=79% Similarity=1.299 Sum_probs=163.9
Q ss_pred CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE--EEcCeecccccccCCCCCcccHH
Q 023675 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY--ILDGDNCRHGLNRDLSFKAEDRV 157 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i--~ldgd~i~~~~~~~~~~~~~~~~ 157 (279)
.++.|+...++..++.++..++|++++|+|+|||||||++++|++.+.. .|.+ ++|+++++..+...+++..++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~--~G~~~~~~d~d~~~~~~~~~~~~~~~~~~ 80 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQ--KGKLCYILDGDNVRHGLNRDLSFKAEDRA 80 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEEHHHHTTTTTTTCCSSHHHHH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHh--cCceEEEecCchhhhHhhcccCcChHHHH
Confidence 3577888888888888999999999999999999999999999999953 4555 99999998777777788888888
Q ss_pred HHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCcccc
Q 023675 158 ENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID 237 (279)
Q Consensus 158 ~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r 237 (279)
.++..+..++..+...+..++..+.++....|+.+++++....++.+||++|.+.+.+|..++++...+.++...+..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~~~~~~~~~~v~L~a~~e~~~~R~~~~l~~~~r~~~~~~~~~~~ 160 (200)
T 3uie_A 81 ENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRSLLPEGDFVEVFMDVPLSVCEARDPKGLYKLARAGKIKGFTGID 160 (200)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHTSCTTSEEEEEECCCHHHHHHHCTTSHHHHHHTTSSCSCBTTT
T ss_pred HHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHhcCCCCEEEEEEeCCHHHHHHhcccchHHHHhcCCCCCCCCCC
Confidence 87777777888777888888888888777888889998887678889999999999999999999888888888888888
Q ss_pred CcCCCCCCCceEEEccCCCC-CCHHHHHHHHHHHHHhCCCccC
Q 023675 238 DPYEPPLNCEIVLKQMGDDC-PSPADMVETVVSYLDENGFLRA 279 (279)
Q Consensus 238 ~~~~~~~~a~~~i~~~~~~~-~~~~e~~~~Il~~l~~~~~~~~ 279 (279)
.+|++|..++++||+ +. .++++++++|+++|++++++.+
T Consensus 161 ~~~~~~~~~~~~idt---~~~~~~~e~v~~i~~~l~~~~~~~~ 200 (200)
T 3uie_A 161 DPYEPPLNCEISLGR---EGGTSPIEMAEKVVGYLDNKGYLQA 200 (200)
T ss_dssp BCCCCCSSCSEEECC---SSCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CcCcCCCCCCEEEec---CCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 999888778899999 77 6999999999999999887654
No 2
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.89 E-value=1e-23 Score=203.00 Aligned_cols=238 Identities=32% Similarity=0.501 Sum_probs=140.3
Q ss_pred ccccc---CccccccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEee-cceeecCCc--ceeccCC
Q 023675 29 SVKMS---GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHK-NSVDKRDRQ--QLLQQKG 102 (279)
Q Consensus 29 ~~~~~---~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~--sl~i~~g 102 (279)
.+.++ +|.-++.+|+|.++|+.++.+.. ..++|+.+...+. .....+.|.. -.+....+. +..+++|
T Consensus 297 ~i~pv~f~~~~y~~~~g~~~~~d~~~~~~~~------~~isgt~ir~~Lr-~G~~~p~~f~~peV~~vLR~~~~~~~~~G 369 (552)
T 3cr8_A 297 GVRLIAYPRMVYVEDRAEHLPEAEAPQGARL------LTLSGEEFQRRMR-AGLKIPEWYSFPEVLAELHRQTPPRERQG 369 (552)
T ss_dssp TCEEECCCCEEEEGGGTEEEEGGGSCTTCCE------ECCCHHHHHHHHT-TTCCCCTTTSCHHHHHHHHHHSCCGGGSC
T ss_pred CCeeeeccceEEecCCCeEEecccCCCCccc------ccCCHHHHHHHHh-cCCCCCccccccchhhhhhhhcccccccc
Confidence 44455 56666999999999999975211 1123333322111 1111112111 011111122 2368899
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCcc-EE-EEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKL-TY-ILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC 180 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G-~i-~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~ 180 (279)
++++|+|+||||||||+++|++.+ .+..| .+ ++|||+++..+...++|...++..+++.+..+.+.+...+..++..
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L-~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi~~ 448 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARL-MEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAICA 448 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHH-HTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred eEEEEECCCCChHHHHHHHHHHhh-cccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEEEe
Confidence 999999999999999999999999 56665 56 6999998765666677877666556666666655555555555554
Q ss_pred cCChHHHHHHHHHHhCCCC-CccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCC
Q 023675 181 LISPYRKDRDACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPS 259 (279)
Q Consensus 181 ~~~~~~~~r~~ar~l~~~~-~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~ 259 (279)
...+....++.++.++... +|+.|++++|.+.+.+|..++++...+.+.+..++.++.+||+|..++++|++ +..+
T Consensus 449 ~~~~~~~~r~~~r~lL~~~g~f~~V~L~~~~e~~~~R~~r~l~~~~~~~~i~~l~~~r~~~e~P~~adl~Idt---~~~s 525 (552)
T 3cr8_A 449 PIAPYRQTRRDVRAMIEAVGGFVEIHVATPIETCESRDRKGLYAKARAGLIPEFTGVSDPYEVPETPELAIDT---TGLA 525 (552)
T ss_dssp CCCCCHHHHHHHHHHHHTTSEEEEEEECC-----------------------------CCCCCCSSCSEEECC---SSCC
T ss_pred cCCccHHHHHHHHHHHHHcCCEEEEEEcCCHHHHHHhccccccccccHhHHHHHHhccccccCCCCCCEEEEC---CCCC
Confidence 4443345555666665543 47789999999999999988888766777888999999999988778999998 7889
Q ss_pred HHHHHHHHHHHHHhCCCc
Q 023675 260 PADMVETVVSYLDENGFL 277 (279)
Q Consensus 260 ~~e~~~~Il~~l~~~~~~ 277 (279)
+++++++|+.+|++.+++
T Consensus 526 ~~e~v~~Il~~L~~~~~~ 543 (552)
T 3cr8_A 526 IDEAVQQILLKLEHEGYL 543 (552)
T ss_dssp HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCcc
Confidence 999999999999987765
No 3
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.88 E-value=8.3e-23 Score=197.70 Aligned_cols=235 Identities=33% Similarity=0.550 Sum_probs=179.3
Q ss_pred CccccccCccccccccccccchhhhhhhhcccccccccccccccCCCCeEEee-cceeecCCcce--eccCCeEEEEEcC
Q 023675 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNILWHK-NSVDKRDRQQL--LQQKGCVIWITGL 110 (279)
Q Consensus 34 ~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~sl--~i~~g~~i~lvG~ 110 (279)
+|..++.+|+|.++|+.++.+.. ..++|+.+..... .....+.|+. -.++...+..+ ..++|.+|+|+|+
T Consensus 332 ~~~y~~~~g~~i~id~~~~~~~~------~~iSgt~ir~~l~-~g~~~p~w~~~~eVsr~lRe~~~~~gq~~~~I~l~Gl 404 (573)
T 1m8p_A 332 MVTYLPDTDEYRPVDQVPAGVKT------LNISGTELRRRLR-SGAHIPEWFSYPEVVKILRESNPPRATQGFTIFLTGY 404 (573)
T ss_dssp CCCBBTTTTBCCCSSSSCTTSCC------BCCCHHHHHHHHH-HTCCCCTTTSCHHHHHHHHTTSCCTTTCCEEEEEECS
T ss_pred ceEEEcCCCcEEecccCCCCcee------ecCChHHHHHHHh-ccCCCCcccccccccHHHHHhcccccccceEEEeecC
Confidence 78888999999999999875211 1123332211011 1112223433 12333344444 5678899999999
Q ss_pred CCChHHHHHHHHHHccccCC-ccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHH
Q 023675 111 SGSGKSTLACALSQALHWRG-KLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDR 189 (279)
Q Consensus 111 sGsGKSTl~~~L~~~l~~~~-~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r 189 (279)
|||||||+++.|+..|...+ ...+++|+|.++..+..+.+|...++..+++++.+++..+.+.+..++.+..++.+..|
T Consensus 405 sGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~VI~~~is~~~~~R 484 (573)
T 1m8p_A 405 MNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAAPIAPYEESR 484 (573)
T ss_dssp TTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHH
T ss_pred CCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCcHHHH
Confidence 99999999999999985433 34789999999887777788888888888888777787777778888888877777777
Q ss_pred HHHHHhCCCC-CccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHH
Q 023675 190 DACRSMLPEG-DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVV 268 (279)
Q Consensus 190 ~~ar~l~~~~-~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il 268 (279)
+.+++++... .++.||||+|.+.+.+|..++++...+.+++..+...+.+||.|..++++||+ +..++++++++|+
T Consensus 485 ~~~r~l~~~~g~~~~V~Lda~~ev~~~R~~r~l~~~~~~~~i~~~~~~r~~~~~p~~~dl~IDt---s~~s~eevv~~Il 561 (573)
T 1m8p_A 485 KFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYAAARRGEIKGFTGVDDPYETPEKADLVVDF---SKQSVRSIVHEII 561 (573)
T ss_dssp HHHHHHHHTTSEEEEEEECCCHHHHHHHCSSCHHHHHHTTSSSSCBTTTBCCCCCSSCSEEECT---TTSCHHHHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEEeCCHHHHHHHhcccchhhhhHHHHHHHHhccccccccCCCCEEEEC---CCCCHHHHHHHHH
Confidence 7777776542 46779999999999999999988877778889999999999987778899998 7789999999999
Q ss_pred HHHHhCCCcc
Q 023675 269 SYLDENGFLR 278 (279)
Q Consensus 269 ~~l~~~~~~~ 278 (279)
..|+++|+++
T Consensus 562 ~~l~~~~~~~ 571 (573)
T 1m8p_A 562 LVLESQGFLE 571 (573)
T ss_dssp HHHHHTTTTC
T ss_pred HHHHhcCCcC
Confidence 9999999875
No 4
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.82 E-value=7.2e-20 Score=177.74 Aligned_cols=196 Identities=51% Similarity=0.887 Sum_probs=148.0
Q ss_pred CCeEEeecceeecCCcceecc----CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc
Q 023675 80 TNILWHKNSVDKRDRQQLLQQ----KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED 155 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~----~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~ 155 (279)
.++.|+...++..+|.....+ +|.+|+|+|++||||||+++.|+..|...+...+.+|+|.++..+.....|....
T Consensus 26 ~~~~~~~~~v~~~~r~~~~~~~~~~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~d 105 (630)
T 1x6v_B 26 TNVTYQAHHVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPED 105 (630)
T ss_dssp --------CCCHHHHHHHSSSSSSCCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHH
T ss_pred ccccccccCCCHHHHHHHhCCCccCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhh
Confidence 578888877777777766565 8899999999999999999999999844445578899999988777666787777
Q ss_pred HHHHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCC--CccEEEEeCCccchhccChhhHHHHHhCCCCCCC
Q 023675 156 RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGF 233 (279)
Q Consensus 156 ~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~ 233 (279)
+...++++.+++..+.+.|.+++.++.++.+..++.++.++... +++.|+||+|.+.+.+|+.+++++..+.+++..+
T Consensus 106 ree~~r~i~eva~~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ly~~aR~~~~~~~ 185 (630)
T 1x6v_B 106 REENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGF 185 (630)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHCTTSHHHHHTTC----C
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHhccccchhhhhhhHHHH
Confidence 77777777777766667788888776666555666677665432 4677999999999999999888887777777777
Q ss_pred ccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675 234 TGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278 (279)
Q Consensus 234 ~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~ 278 (279)
...+..|+.+..++++||+ +..++++++++|++.|..+++++
T Consensus 186 ~~~~~~Ye~p~~~dlvIDt---s~~s~eevv~~Il~~L~~~~~ip 227 (630)
T 1x6v_B 186 TGIDSEYEKPEAPELVLKT---DSCDVNDCVQQVVELLQERDIVP 227 (630)
T ss_dssp BTTTBCCCCCSSCSEEEET---TSSCHHHHHHHHHHHHHHTTSSC
T ss_pred HHhhhhhcccCCCcEEEEC---CCCCHHHHHHHHHHHHHhcCccc
Confidence 7777788777678899998 77899999999999999887654
No 5
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.81 E-value=5.1e-20 Score=177.33 Aligned_cols=235 Identities=38% Similarity=0.670 Sum_probs=158.0
Q ss_pred CccccccCccccccccccc-cchhhhhhhhccccccccccc-ccccCCCCeEEee-cceeecCCcce--eccCCeEEEEE
Q 023675 34 GFFNVSRLRSLQPIKALEE-SATASVVQESAAISGNNLCQN-STVAKSTNILWHK-NSVDKRDRQQL--LQQKGCVIWIT 108 (279)
Q Consensus 34 ~~~~~~~~g~~~~id~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~-~~~~~~~~~sl--~i~~g~~i~lv 108 (279)
+|.-++.+|+|.++|+.++ .+ ....++|+.+... +. ......+|.. -.+....+..+ ..+.|.+|+|+
T Consensus 306 ~~~y~~~~g~~i~id~~~~~~~------~~~~iSgt~iR~~~L~-~g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~ 378 (546)
T 2gks_A 306 ELVYVPELDQYVEINEAKKRNL------KYINISGTEIRENFLK-QGRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLT 378 (546)
T ss_dssp CCEEETTTTEEECSCC---------------------CTHHHHT-TTCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEE
T ss_pred ceEEEcCCCeEEeeeccCCCCc------eeeecchhhhhhhhhc-CCCCCCccccchhHHHHHHHhhccccccceEEEcc
Confidence 7777799999999999997 31 1111344433221 11 1111112221 01211122222 34668899999
Q ss_pred cCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHH
Q 023675 109 GLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKD 188 (279)
Q Consensus 109 G~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~ 188 (279)
|++||||||+++.|+..+...+....++|+|.+++.+..+..|...++..++..+..+...+...|..++.+...+.+..
T Consensus 379 G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~d~~~~~~~~ 458 (546)
T 2gks_A 379 GLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICALVSPYRSA 458 (546)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHH
T ss_pred CCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEEEcCCCCHHH
Confidence 99999999999999998865555578999999887777677787777766666665555555566766777766666667
Q ss_pred HHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHH
Q 023675 189 RDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVV 268 (279)
Q Consensus 189 r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il 268 (279)
|+.++.++..++++.|++++|.+.+.+|+.++++...+.+.+..+...+.+|+.+..++++||+ +..++++++++|+
T Consensus 459 r~~~~~~l~~~d~~vV~L~~~~e~~~~Rl~r~~~~~~~~~~i~~~~~vr~~~e~~~~adivIDt---s~~s~eev~~~I~ 535 (546)
T 2gks_A 459 RNQVRNMMEEGKFIEVFVDAPVEVCEERDVKGLYKKAKEGLIKGFTGVDDPYEPPVAPEVRVDT---TKLTPEESALKIL 535 (546)
T ss_dssp HHHHHTTSCTTCEEEEEEECCGGGHHHHCCSSHHHHC------CCBTTTBCCCCCSSCSEEEET---TTSCHHHHHHHHH
T ss_pred HHHHHHHhhcCCEEEEEEeCCHHHHHHHhhccccccccHHHHHHHHhhhhccccccCCcEEEEC---CCCCHHHHHHHHH
Confidence 7778888776666779999999999999987776554455677777788899877668899998 7789999999999
Q ss_pred HHHHhCCCcc
Q 023675 269 SYLDENGFLR 278 (279)
Q Consensus 269 ~~l~~~~~~~ 278 (279)
..|+++|++.
T Consensus 536 ~~L~~~g~~~ 545 (546)
T 2gks_A 536 EFLKKEGFIK 545 (546)
T ss_dssp HHHHHHTSCC
T ss_pred HHHHHcCCcc
Confidence 9999999875
No 6
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.81 E-value=1.5e-19 Score=153.34 Aligned_cols=187 Identities=53% Similarity=0.875 Sum_probs=132.7
Q ss_pred ceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc--EEEEcCeecccccccCCCCCcccHHHHHHHHHH
Q 023675 88 SVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCRHGLNRDLSFKAEDRVENIRRIGE 165 (279)
Q Consensus 88 ~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G--~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~ 165 (279)
.++...+..+.+++|.+++|+|++||||||+++.|++.+ .+..| .+++|+|.++..+.....+....+..++..+..
T Consensus 11 ~~~~~~r~~~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l-~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~ 89 (211)
T 1m7g_A 11 ALTRSERTELRNQRGLTIWLTGLSASGKSTLAVELEHQL-VRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAE 89 (211)
T ss_dssp CCCHHHHHHHHTSSCEEEEEECSTTSSHHHHHHHHHHHH-HHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHH
T ss_pred ccCHHHhhcccCCCCCEEEEECCCCCCHHHHHHHHHHHh-ccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHH
Confidence 334445557788999999999999999999999999998 44456 899999998766655555665555556555544
Q ss_pred HHHHHHhCCcchhcccCChHHHHHHHHHHhCC---C-----CCccEEEEeCCccchhccChhhHHHHHhCCCCCCCcccc
Q 023675 166 VAKLFADAGVICIACLISPYRKDRDACRSMLP---E-----GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGID 237 (279)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~---~-----~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r 237 (279)
.+......+..++.++.+..+..++.++.+.. . .+...|+||+|.+.+.+|..++++...+.+....+....
T Consensus 90 ~~~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~~r~~~~~~r~~~~~~~~~~~ 169 (211)
T 1m7g_A 90 VAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGLYKKAREGVIKEFTGIS 169 (211)
T ss_dssp HHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCHHHHHHHTSSSSCBTTT
T ss_pred HHHHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhhhHHHHHHHHhcchhhhhhhh
Confidence 33333345666666665544455666665433 1 134569999999999999876676666655554444444
Q ss_pred CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCcc
Q 023675 238 DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFLR 278 (279)
Q Consensus 238 ~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~~ 278 (279)
..|+.+..++++||+ +..++++++++|+..+..+|++.
T Consensus 170 ~~y~~~~~~~~~IDt---~~~s~eev~~~I~~~l~~~~~~~ 207 (211)
T 1m7g_A 170 APYEAPANPEVHVKN---YELPVQDAVKQIIDYLDTKGYLP 207 (211)
T ss_dssp BCCCCCSSCSEEEEC---SSSCHHHHHHHHHHHHHHTTCSC
T ss_pred hhccCCCCCeEEEEC---CCCCHHHHHHHHHHHHHHcCCcc
Confidence 455555556799998 67799999999999999988764
No 7
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.80 E-value=9.3e-19 Score=144.48 Aligned_cols=175 Identities=54% Similarity=0.928 Sum_probs=125.2
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIA 179 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~ 179 (279)
++|++++|+|++||||||+++.|++.+...+...+.+|++.++..+....++..+....+++++...+..+.+.+..++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCIT 82 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 47899999999999999999999999833233378889998877665556676666666666655555556556666665
Q ss_pred ccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCC
Q 023675 180 CLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDC 257 (279)
Q Consensus 180 ~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~ 257 (279)
+..++....++.++.++. ...+..++|++|.+.+.+|+.++++...+...+.....+...|+.+..++++|++ +.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vid~---~~ 159 (179)
T 2pez_A 83 SFISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKT---DS 159 (179)
T ss_dssp ECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCTTSHHHHHHTTSSCSCBTTTBCCCCCSSCSEEEET---TT
T ss_pred ecCCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHHhhhhHHHHhcccccccccCCccccCCCCCcEEEEC---CC
Confidence 555554333433333322 1234569999999999999987776666666655544445556656668899998 77
Q ss_pred CCHHHHHHHHHHHHHhCCCc
Q 023675 258 PSPADMVETVVSYLDENGFL 277 (279)
Q Consensus 258 ~~~~e~~~~Il~~l~~~~~~ 277 (279)
.++++++++|.+.++++|++
T Consensus 160 ~~~~~~~~~i~~~l~~~~~~ 179 (179)
T 2pez_A 160 CDVNDCVQQVVELLQERDIV 179 (179)
T ss_dssp SCHHHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHhcCC
Confidence 89999999999999988864
No 8
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.79 E-value=4.7e-19 Score=161.84 Aligned_cols=140 Identities=18% Similarity=0.247 Sum_probs=100.0
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc---c---cccCC
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH---G---LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~---~---~~~~~ 149 (279)
.|++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++.. . ....+
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE-QPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEEEECCEECcccccccchhhCCE
Confidence 4678888888864 349999999999999999999999999999999 8999999999998721 0 11112
Q ss_pred CCCccc-----------------------HHHHHHHHHHHHHHHHhCCc-chhcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 150 SFKAED-----------------------RVENIRRIGEVAKLFADAGV-ICIACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 150 ~~~~~~-----------------------~~~~~~~v~~~~~~~~~~~~-~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
+|.+++ ..+..+++.++...+.-... ......+|++++|| .++|+++.+|++ +
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~l--L 160 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPEL--I 160 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--E
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--E
Confidence 221110 01112223333332211111 12355789999999 999999999998 9
Q ss_pred EEeCCccchhccChhhHHH
Q 023675 205 FMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~ 223 (279)
+||||++.|+......+..
T Consensus 161 LLDEPts~LD~~~r~~l~~ 179 (359)
T 3fvq_A 161 LLDEPFSALDEQLRRQIRE 179 (359)
T ss_dssp EEESTTTTSCHHHHHHHHH
T ss_pred EEeCCcccCCHHHHHHHHH
Confidence 9999999999988776543
No 9
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.79 E-value=3.7e-19 Score=153.98 Aligned_cols=140 Identities=16% Similarity=0.154 Sum_probs=99.2
Q ss_pred eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-------
Q 023675 82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------- 145 (279)
Q Consensus 82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------- 145 (279)
+++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...-
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEEEECCEEcccCCHHHHHHH
Confidence 567788888852 349999999999999999999999999999999 899999999998874210
Q ss_pred -ccCCCCCcc--------cHHHHHH---------------HHHHHHHHHHhCCcch-----hcccCChHHHHH-HHHHHh
Q 023675 146 -NRDLSFKAE--------DRVENIR---------------RIGEVAKLFADAGVIC-----IACLISPYRKDR-DACRSM 195 (279)
Q Consensus 146 -~~~~~~~~~--------~~~~~~~---------------~v~~~~~~~~~~~~~~-----i~~~~~~~~~~r-~~ar~l 195 (279)
...++|.++ ...+.+. ....+...+...++.. .+..+|+++++| .+|+++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 000111111 1111110 0111223333334322 355789999999 999999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+.+|++ +++|||++.++......+++.
T Consensus 161 ~~~p~l--lllDEPts~LD~~~~~~i~~~ 187 (235)
T 3tif_A 161 ANNPPI--ILADQPTWALDSKTGEKIMQL 187 (235)
T ss_dssp TTCCSE--EEEESTTTTSCHHHHHHHHHH
T ss_pred HcCCCE--EEEeCCcccCCHHHHHHHHHH
Confidence 999998 999999999999887765543
No 10
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.79 E-value=3.7e-19 Score=157.43 Aligned_cols=140 Identities=17% Similarity=0.157 Sum_probs=100.7
Q ss_pred CeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------ccccC
Q 023675 81 NILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------GLNRD 148 (279)
Q Consensus 81 ~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------~~~~~ 148 (279)
.+++++++++|..+ .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++.. .+...
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~-~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL-KPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCeEEEECCEECCcccccHHHHhCc
Confidence 47889999999642 29999999999999999999999999999999 8999999999998731 01111
Q ss_pred CCCCccc---------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 149 LSFKAED---------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 149 ~~~~~~~---------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
++|.++. ..+.+.. ...+...+...++.. .+..+|+++++| .+|++++.+|++
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~l- 164 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV- 164 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSE-
T ss_pred EEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCE-
Confidence 2221111 1111110 011222333334432 345689999999 999999999998
Q ss_pred EEEEeCCccchhccChhhHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~ 223 (279)
++||||++.++......+++
T Consensus 165 -LlLDEPts~LD~~~~~~i~~ 184 (275)
T 3gfo_A 165 -LILDEPTAGLDPMGVSEIMK 184 (275)
T ss_dssp -EEEECTTTTCCHHHHHHHHH
T ss_pred -EEEECccccCCHHHHHHHHH
Confidence 99999999999988776554
No 11
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.78 E-value=1.6e-18 Score=143.87 Aligned_cols=175 Identities=38% Similarity=0.680 Sum_probs=126.3
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV 175 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (279)
.+..++|.+++|+|++||||||+++.|++.+...+.-.+++|+|.++..+....++...++..++..+...+..+...+.
T Consensus 7 ~~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~ 86 (186)
T 2yvu_A 7 YKCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGV 86 (186)
T ss_dssp -CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCC
Confidence 34556899999999999999999999999985433335678999887766666677776666666555555544445666
Q ss_pred chhcccCChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEcc
Q 023675 176 ICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQM 253 (279)
Q Consensus 176 ~~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~ 253 (279)
.++.+.....+..++.++.++.. ..++.||||+|.+.+.+|..++++.......+..+...+..|++|..++++||+
T Consensus 87 ~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~Id~- 165 (186)
T 2yvu_A 87 IVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRDPKGLYKKALKGELENFTGITDPYEPPENPQLVLDT- 165 (186)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHCHHHHHHHHHTTCCSSCHHHHSCCCCCSSCSEEEET-
T ss_pred EEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhhhhhhhhHHhhcchhhhhhhhhcccCCCCCcEEEEC-
Confidence 66655555444555555554432 235669999999999999977766555555666666667777766557899998
Q ss_pred CCCCCCHHHHHHHHHHHHHh
Q 023675 254 GDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 254 ~~~~~~~~e~~~~Il~~l~~ 273 (279)
+..++++++++|+..++.
T Consensus 166 --~~~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 166 --ESNTIEHNVSYLYSLVKA 183 (186)
T ss_dssp --TTSCHHHHHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHHHH
Confidence 778999999999998865
No 12
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.78 E-value=6.9e-19 Score=160.93 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=102.5
Q ss_pred CCeEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc------
Q 023675 80 TNILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG------ 144 (279)
Q Consensus 80 ~~i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~------ 144 (279)
..|++++++++|.. +.||++++|++++|+||||||||||+++|++++ .|++|.|+++|.++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~-~p~~G~I~i~G~~i~~~~~~~~~ 101 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSVLVDGQELTTLSESELT 101 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECSSCCHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHHHHH
Confidence 46899999999853 349999999999999999999999999999999 89999999999987421
Q ss_pred -cccCCCCCccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675 145 -LNRDLSFKAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 145 -~~~~~~~~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
....++|.+++ -.+.+.. ...+..++...++.. ....+|++++|| .+||+++.+
T Consensus 102 ~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~ 181 (366)
T 3tui_C 102 KARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASN 181 (366)
T ss_dssp HHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTC
T ss_pred HHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 11122222221 0111100 011222233333322 355689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
|++ +++|||++.|+......+++.
T Consensus 182 P~l--LLlDEPTs~LD~~~~~~i~~l 205 (366)
T 3tui_C 182 PKV--LLCDQATSALDPATTRSILEL 205 (366)
T ss_dssp CSE--EEEESTTTTSCHHHHHHHHHH
T ss_pred CCE--EEEECCCccCCHHHHHHHHHH
Confidence 998 999999999999887775543
No 13
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.78 E-value=2.7e-19 Score=160.47 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=101.1
Q ss_pred CCCeEEeecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675 79 STNILWHKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD 148 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~ 148 (279)
.+.|++++++|+|..+ .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... +...
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I~i~G~~i~~~~~~~~r~~ 129 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFY-DISSGCIRIDGQDISQVTQASLRSH 129 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSS-CCSEEEEEETTEETTSBCHHHHHHT
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCCcEEEECCEEcccCCHHHHhcc
Confidence 4579999999999642 39999999999999999999999999999999 89999999999988531 1111
Q ss_pred CCCCcc-------cHHHHH------------HHHHHHH---HHHHhC--Ccc----hhcccCChHHHHH-HHHHHhCCCC
Q 023675 149 LSFKAE-------DRVENI------------RRIGEVA---KLFADA--GVI----CIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 149 ~~~~~~-------~~~~~~------------~~v~~~~---~~~~~~--~~~----~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
++|.++ ..++.+ ....+.+ ...... |+. ..+..+|+++++| .+||+++.+|
T Consensus 130 i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p 209 (306)
T 3nh6_A 130 IGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAP 209 (306)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCC
T ss_pred eEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCC
Confidence 111111 111111 1111111 111110 111 1234689999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHH
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++ ++||||++.++......+++.
T Consensus 210 ~i--LlLDEPts~LD~~~~~~i~~~ 232 (306)
T 3nh6_A 210 GI--ILLDEATSALDTSNERAIQAS 232 (306)
T ss_dssp SE--EEEECCSSCCCHHHHHHHHHH
T ss_pred CE--EEEECCcccCCHHHHHHHHHH
Confidence 98 999999999999877765543
No 14
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.78 E-value=7.3e-19 Score=161.70 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=99.6
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--ccCCCCCc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--NRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~~~~~~~~ 153 (279)
.|++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...- ...+++.+
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~G~I~i~G~~~~~~~~~~r~ig~Vf 81 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLFIGEKRMNDTPPAERGVGMVF 81 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSCEEEEC
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCC-CCCCeEEEECCEECCCCCHHHCCEEEEe
Confidence 3677888888864 449999999999999999999999999999999 899999999999874211 11112111
Q ss_pred cc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 154 ED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 154 ~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
++ ..+++.. ...+..++...++.. ....+|++++|| +++|+++.+|++ ++|||
T Consensus 82 Q~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~l--LLLDE 159 (381)
T 3rlf_A 82 QSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSV--FLLDE 159 (381)
T ss_dssp TTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSE--EEEES
T ss_pred cCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCE--EEEEC
Confidence 10 1111100 011222233333322 355689999999 999999999998 99999
Q ss_pred CccchhccChhhHHH
Q 023675 209 PLQVCEARDPKGLYK 223 (279)
Q Consensus 209 p~~~l~~R~~~~l~~ 223 (279)
|++.|+......+..
T Consensus 160 Pts~LD~~~~~~l~~ 174 (381)
T 3rlf_A 160 PLSNLDAALRVQMRI 174 (381)
T ss_dssp TTTTSCHHHHHHHHH
T ss_pred CCcCCCHHHHHHHHH
Confidence 999999988776544
No 15
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.77 E-value=2.5e-18 Score=146.75 Aligned_cols=141 Identities=19% Similarity=0.225 Sum_probs=100.1
Q ss_pred CCeEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcc-
Q 023675 80 TNILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAE- 154 (279)
Q Consensus 80 ~~i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~- 154 (279)
..+++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|.+|.|.++|.++. .....++|.++
T Consensus 9 ~~l~~~~ls~~y~~~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~-~~~~~i~~v~q~ 86 (214)
T 1sgw_A 9 SKLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEIIYNGVPIT-KVKGKIFFLPEE 86 (214)
T ss_dssp CEEEEEEEEEESSSEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGG-GGGGGEEEECSS
T ss_pred ceEEEEEEEEEeCCeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEhh-hhcCcEEEEeCC
Confidence 45788888888854 338999999999999999999999999999999 899999999998763 11111111111
Q ss_pred -------cHHHHHHHH----------HHHHHHHHhCCcc---hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675 155 -------DRVENIRRI----------GEVAKLFADAGVI---CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (279)
Q Consensus 155 -------~~~~~~~~v----------~~~~~~~~~~~~~---~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l 213 (279)
...+.+... ..+..++...++. ..+..+|+++++| .++++++.+|++ ++||||++.+
T Consensus 87 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~l--llLDEPts~L 164 (214)
T 1sgw_A 87 IIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEI--YVLDDPVVAI 164 (214)
T ss_dssp CCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSE--EEEESTTTTS
T ss_pred CcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCcCC
Confidence 111111110 1122223333332 2344688999999 999999999998 9999999999
Q ss_pred hccChhhHHHH
Q 023675 214 EARDPKGLYKL 224 (279)
Q Consensus 214 ~~R~~~~l~~~ 224 (279)
+......+++.
T Consensus 165 D~~~~~~l~~~ 175 (214)
T 1sgw_A 165 DEDSKHKVLKS 175 (214)
T ss_dssp CTTTHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99887775543
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.77 E-value=1.4e-18 Score=149.25 Aligned_cols=140 Identities=24% Similarity=0.227 Sum_probs=99.8
Q ss_pred eEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-------cc-cC
Q 023675 82 ILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-------LN-RD 148 (279)
Q Consensus 82 i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-------~~-~~ 148 (279)
+++++++++|..+ .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++... .. ..
T Consensus 5 l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLD-APTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSS-CCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 6788888888643 39999999999999999999999999999999 89999999999887421 00 11
Q ss_pred CCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 149 LSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 149 ~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
++|.++ ...+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~l-- 161 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPIL-- 161 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSE--
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence 111111 11111110 011223333344322 345689999999 999999999998
Q ss_pred EEEeCCccchhccChhhHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||++.++....+.+++.
T Consensus 162 llLDEPt~~LD~~~~~~~~~~ 182 (224)
T 2pcj_A 162 LFADEPTGNLDSANTKRVMDI 182 (224)
T ss_dssp EEEESTTTTCCHHHHHHHHHH
T ss_pred EEEeCCCCCCCHHHHHHHHHH
Confidence 999999999999887765543
No 17
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=2.9e-18 Score=150.25 Aligned_cols=142 Identities=15% Similarity=0.160 Sum_probs=101.5
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc---cccCCCC
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---LNRDLSF 151 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---~~~~~~~ 151 (279)
+.+++++++++|..+ .||++++|++++|+||||||||||+++|+|++ .|.+|.|+++|.++... ....++|
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEECCccHHHHhhcEEE
Confidence 568899999999643 39999999999999999999999999999999 89999999999887421 1111111
Q ss_pred Ccc--------cHHHHHHHH------------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675 152 KAE--------DRVENIRRI------------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (279)
Q Consensus 152 ~~~--------~~~~~~~~v------------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l 206 (279)
.++ ...+.+... ..+..++...++.. .+..+|+++++| .++++++.+|++ ++|
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l--llL 170 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRL--AIL 170 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred EcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 111 111111110 11222233334322 345689999999 999999999998 999
Q ss_pred eCCccchhccChhhHHHH
Q 023675 207 DVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 207 d~p~~~l~~R~~~~l~~~ 224 (279)
|||++.++......+++.
T Consensus 171 DEPts~LD~~~~~~l~~~ 188 (256)
T 1vpl_A 171 DEPTSGLDVLNAREVRKI 188 (256)
T ss_dssp ESTTTTCCHHHHHHHHHH
T ss_pred eCCccccCHHHHHHHHHH
Confidence 999999999887765543
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.76 E-value=1.6e-18 Score=150.38 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=98.7
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~ 150 (279)
.+++++++++|..+ .||++++|++++|+||||||||||+++|+|++ .|++|.|.++|.++... ....++
T Consensus 6 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 47888888888653 39999999999999999999999999999999 89999999999887321 001111
Q ss_pred CCcc--------cHHHH--------------HHHHHHHHHHHH--hCCcchhcccCChHHHHH-HHHHHhCCCCCccEEE
Q 023675 151 FKAE--------DRVEN--------------IRRIGEVAKLFA--DAGVICIACLISPYRKDR-DACRSMLPEGDFIEVF 205 (279)
Q Consensus 151 ~~~~--------~~~~~--------------~~~v~~~~~~~~--~~~~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ 205 (279)
|.++ ...+. ...+.++...+. ..-....+..+|+++++| .++++++.+|++ ++
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--ll 162 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKL--LM 162 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSE--EE
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EE
Confidence 1111 00010 111111211110 111122355689999999 999999999998 99
Q ss_pred EeCCccchhccChhhHHHH
Q 023675 206 MDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 206 ld~p~~~l~~R~~~~l~~~ 224 (279)
||||++.++....+.+++.
T Consensus 163 LDEPts~LD~~~~~~l~~~ 181 (240)
T 1ji0_A 163 MDEPSLGLAPILVSEVFEV 181 (240)
T ss_dssp EECTTTTCCHHHHHHHHHH
T ss_pred EcCCcccCCHHHHHHHHHH
Confidence 9999999999887765543
No 19
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.76 E-value=1.7e-18 Score=152.28 Aligned_cols=141 Identities=21% Similarity=0.217 Sum_probs=100.6
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------------
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------------ 143 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------------ 143 (279)
.+++++++++|..+ .||++++|++++|+||||||||||+++|+|++ .|.+|.|+++|.++..
T Consensus 6 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEccccccccccccccC
Confidence 47888998888643 39999999999999999999999999999999 8999999999988741
Q ss_pred -----ccccCCCCCcc--------cHHHHHHH-------------HHHHHHHHHhCCcchh-----cccCChHHHHH-HH
Q 023675 144 -----GLNRDLSFKAE--------DRVENIRR-------------IGEVAKLFADAGVICI-----ACLISPYRKDR-DA 191 (279)
Q Consensus 144 -----~~~~~~~~~~~--------~~~~~~~~-------------v~~~~~~~~~~~~~~i-----~~~~~~~~~~r-~~ 191 (279)
.....++|.++ ...+.+.. ...+..++...++... +..+|+++++| .+
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~l 164 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 164 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHH
Confidence 00111111111 11111110 0112233344444332 44689999999 99
Q ss_pred HHHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 192 CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 192 ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+++++.+|++ ++||||++.++......+.+.
T Consensus 165 AraL~~~p~l--llLDEPts~LD~~~~~~~~~~ 195 (262)
T 1b0u_A 165 ARALAMEPDV--LLFDEPTSALDPELVGEVLRI 195 (262)
T ss_dssp HHHHHTCCSE--EEEESTTTTSCHHHHHHHHHH
T ss_pred HHHHhcCCCE--EEEeCCCccCCHHHHHHHHHH
Confidence 9999999998 999999999999887765543
No 20
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.76 E-value=3.3e-18 Score=156.23 Aligned_cols=142 Identities=15% Similarity=0.179 Sum_probs=102.2
Q ss_pred CCeEEeecceee-cCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCC
Q 023675 80 TNILWHKNSVDK-RDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSF 151 (279)
Q Consensus 80 ~~i~~~~~~~~~-~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~ 151 (279)
..+++++++++| ... .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++... ....++|
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~ 91 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE-RPTKGDVWIGGKRVTDLPPQKRNVGL 91 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTCCGGGSSEEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCccEEEECCEECCcCChhhCcEEE
Confidence 458889999999 543 39999999999999999999999999999999 89999999999887421 1111222
Q ss_pred Cccc--------HHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEE
Q 023675 152 KAED--------RVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFM 206 (279)
Q Consensus 152 ~~~~--------~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~l 206 (279)
.+++ ..+.+.. ...+..++...++.. ....+|++++|| .++|+++.+|++ ++|
T Consensus 92 v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLL 169 (355)
T 1z47_A 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQV--LLF 169 (355)
T ss_dssp ECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEE
T ss_pred EecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE--EEE
Confidence 2211 1111110 011222333334432 345689999999 999999999998 999
Q ss_pred eCCccchhccChhhHHHH
Q 023675 207 DVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 207 d~p~~~l~~R~~~~l~~~ 224 (279)
|||++.|+......+.+.
T Consensus 170 DEP~s~LD~~~r~~l~~~ 187 (355)
T 1z47_A 170 DEPFAAIDTQIRRELRTF 187 (355)
T ss_dssp ESTTCCSSHHHHHHHHHH
T ss_pred eCCcccCCHHHHHHHHHH
Confidence 999999999887765543
No 21
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.76 E-value=2.9e-18 Score=156.71 Aligned_cols=140 Identities=17% Similarity=0.170 Sum_probs=99.3
Q ss_pred eEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-------cccc
Q 023675 82 ILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-------GLNR 147 (279)
Q Consensus 82 i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-------~~~~ 147 (279)
+++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++.. ....
T Consensus 4 l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEEEECCEECcccccccCChhhC
Confidence 677788777754 349999999999999999999999999999999 8999999999987632 0111
Q ss_pred CCCCCccc--------HHHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCcc
Q 023675 148 DLSFKAED--------RVENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFI 202 (279)
Q Consensus 148 ~~~~~~~~--------~~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i 202 (279)
.++|.+++ ..+.+. ....+..++...++.. ....+|+++++| .++|+++.+|++
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~l- 161 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSL- 161 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE-
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE-
Confidence 11111110 011100 0011222333334322 345689999999 999999999998
Q ss_pred EEEEeCCccchhccChhhHHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||++.++......+.+.
T Consensus 162 -LLLDEP~s~LD~~~r~~l~~~ 182 (353)
T 1oxx_K 162 -LLLDEPFSNLDARMRDSARAL 182 (353)
T ss_dssp -EEEESTTTTSCGGGHHHHHHH
T ss_pred -EEEECCcccCCHHHHHHHHHH
Confidence 999999999999988775543
No 22
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.76 E-value=4.1e-18 Score=156.04 Aligned_cols=140 Identities=18% Similarity=0.141 Sum_probs=100.0
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE 154 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~ 154 (279)
+++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++... ....++|.++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIY-KPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp EEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 678888888864 349999999999999999999999999999999 89999999999887421 0111121111
Q ss_pred --------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675 155 --------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (279)
Q Consensus 155 --------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p 209 (279)
...+.+.. ...+..++...++.. ....+|++++|| .++|+++.+|++ ++||||
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDEP 160 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEV--LLLDEP 160 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEESG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECc
Confidence 11111110 011222333333322 345689999999 999999999998 999999
Q ss_pred ccchhccChhhHHHH
Q 023675 210 LQVCEARDPKGLYKL 224 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~ 224 (279)
++.|+......+...
T Consensus 161 ~s~LD~~~r~~l~~~ 175 (362)
T 2it1_A 161 LSNLDALLRLEVRAE 175 (362)
T ss_dssp GGGSCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHH
Confidence 999999887765543
No 23
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.76 E-value=1.1e-17 Score=147.06 Aligned_cols=141 Identities=19% Similarity=0.193 Sum_probs=101.1
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cc---cccCC
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HG---LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~---~~~~~ 149 (279)
.+++++++++|..+ .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++. .. ....+
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLE-DFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCC-CCCCcEEEECCEECCCccccHHHHhCcE
Confidence 58999999999643 39999999999999999999999999999999 899999999998873 00 01111
Q ss_pred CCCcc--------cHHHHHHH-------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 150 SFKAE--------DRVENIRR-------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 150 ~~~~~--------~~~~~~~~-------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
+|.++ ...+.+.. ...+..++...++.. .+..+|+++++| .++++++.+|++
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~l-- 180 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKI-- 180 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCE--
Confidence 11111 11111110 011223333444432 345689999999 999999999998
Q ss_pred EEEeCCccchhccChhhHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||++.++......+.+.
T Consensus 181 llLDEPts~LD~~~~~~~~~~ 201 (263)
T 2olj_A 181 MLFDEPTSALDPEMVGEVLSV 201 (263)
T ss_dssp EEEESTTTTSCHHHHHHHHHH
T ss_pred EEEeCCcccCCHHHHHHHHHH
Confidence 999999999999887765543
No 24
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.76 E-value=3.7e-18 Score=157.01 Aligned_cols=139 Identities=16% Similarity=0.112 Sum_probs=98.5
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc------c--cccC
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH------G--LNRD 148 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~------~--~~~~ 148 (279)
+++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++.. . ....
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC-CCCccEEEECCEECccccccccCCHhHCC
Confidence 677788888754 349999999999999999999999999999999 8999999999988643 1 0111
Q ss_pred CCCCcc--------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 149 LSFKAE--------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 149 ~~~~~~--------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
++|.++ ...+.+.. ...+..++...++.. ....+|+++++| .++|+++.+|++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l-- 160 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQV-- 160 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSE--
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCE--
Confidence 222111 11111110 011122222223322 345689999999 999999999998
Q ss_pred EEEeCCccchhccChhhHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~ 223 (279)
++||||++.|+......+..
T Consensus 161 LLLDEP~s~LD~~~r~~l~~ 180 (372)
T 1g29_1 161 FLMDEPLSNLDAKLRVRMRA 180 (372)
T ss_dssp EEEECTTTTSCHHHHHHHHH
T ss_pred EEECCCCccCCHHHHHHHHH
Confidence 99999999999988776554
No 25
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.75 E-value=6.2e-18 Score=147.35 Aligned_cols=142 Identities=19% Similarity=0.254 Sum_probs=98.4
Q ss_pred CCeEEeecceeec--CC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccC
Q 023675 80 TNILWHKNSVDKR--DR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRD 148 (279)
Q Consensus 80 ~~i~~~~~~~~~~--~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~ 148 (279)
.+|++++++++|. .+ .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... +...
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhc
Confidence 5689999999992 22 29999999999999999999999999999999 89999999999887421 0000
Q ss_pred CCCCcc-------cHHHHH---------HHHHHHH------HHHHhC--Cc----chhcccCChHHHHH-HHHHHhCCCC
Q 023675 149 LSFKAE-------DRVENI---------RRIGEVA------KLFADA--GV----ICIACLISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 149 ~~~~~~-------~~~~~~---------~~v~~~~------~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~~~ 199 (279)
++|.++ ...+.+ ..+.+.. ..+... ++ ...+..+|+++++| .++++++.+|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 111000 111111 0111111 111110 10 11235689999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHH
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++ ++||||++.++....+.+++.
T Consensus 165 ~l--llLDEPts~LD~~~~~~i~~~ 187 (247)
T 2ff7_A 165 KI--LIFDEATSALDYESEHVIMRN 187 (247)
T ss_dssp SE--EEECCCCSCCCHHHHHHHHHH
T ss_pred CE--EEEeCCcccCCHHHHHHHHHH
Confidence 98 999999999999887775543
No 26
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.75 E-value=3.7e-18 Score=156.19 Aligned_cols=139 Identities=16% Similarity=0.074 Sum_probs=98.9
Q ss_pred eEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc
Q 023675 82 ILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE 154 (279)
Q Consensus 82 i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~ 154 (279)
+++++++++|.+ +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++... ....++|.++
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY-KPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC-CCCccEEEECCEECCCCChhhCcEEEEec
Confidence 677888888854 349999999999999999999999999999999 89999999999887421 0111111111
Q ss_pred --------cHHHHHHH------------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCC
Q 023675 155 --------DRVENIRR------------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVP 209 (279)
Q Consensus 155 --------~~~~~~~~------------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p 209 (279)
...+.+.. ...+..++...++.. ....+|+++++| .++|+++.+|++ ++||||
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~l--LLLDEP 160 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKV--LLFDEP 160 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE--EEEEST
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECC
Confidence 01111100 011222333334322 345689999999 999999999998 999999
Q ss_pred ccchhccChhhHHH
Q 023675 210 LQVCEARDPKGLYK 223 (279)
Q Consensus 210 ~~~l~~R~~~~l~~ 223 (279)
++.|+......+.+
T Consensus 161 ~s~LD~~~r~~l~~ 174 (359)
T 2yyz_A 161 LSNLDANLRMIMRA 174 (359)
T ss_dssp TTTSCHHHHHHHHH
T ss_pred cccCCHHHHHHHHH
Confidence 99999988776554
No 27
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.75 E-value=2.8e-18 Score=151.10 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=99.3
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc----------
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL---------- 145 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~---------- 145 (279)
.+++++++++|..+ .||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++...-
T Consensus 11 ~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL-SPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS-CCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 47888888888653 39999999999999999999999999999999 899999999999875310
Q ss_pred -ccCCCC-CcccHHHHHH----------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCC------CCCcc
Q 023675 146 -NRDLSF-KAEDRVENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLP------EGDFI 202 (279)
Q Consensus 146 -~~~~~~-~~~~~~~~~~----------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~------~~~~i 202 (279)
.....+ ......+.+. ....+...+...++.. ....+|+++++| .++++++. +|++
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~l- 168 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRW- 168 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEE-
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE-
Confidence 000000 0000111110 0011222233333322 345689999999 99999998 8888
Q ss_pred EEEEeCCccchhccChhhHHHH
Q 023675 203 EVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 203 ~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||++.++......+++.
T Consensus 169 -LllDEPts~LD~~~~~~i~~~ 189 (266)
T 4g1u_C 169 -LFLDEPTSALDLYHQQHTLRL 189 (266)
T ss_dssp -EEECCCCSSCCHHHHHHHHHH
T ss_pred -EEEeCccccCCHHHHHHHHHH
Confidence 999999999999887765543
No 28
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.75 E-value=6.3e-18 Score=148.13 Aligned_cols=141 Identities=16% Similarity=0.143 Sum_probs=100.1
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCC
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLS 150 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~ 150 (279)
.+++++++++|..+ .||++++|++++|+||||||||||+++|+|++ .|++|.|.++|.++... ....++
T Consensus 7 ~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 47888998888643 39999999999999999999999999999999 89999999999887321 011111
Q ss_pred CCccc--------HHHHH-------------------------HHHHHHHHHHHhCCcch----hcccCChHHHHH-HHH
Q 023675 151 FKAED--------RVENI-------------------------RRIGEVAKLFADAGVIC----IACLISPYRKDR-DAC 192 (279)
Q Consensus 151 ~~~~~--------~~~~~-------------------------~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~a 192 (279)
|.+++ ..+.+ .....+..++...++.. .+..+|+++++| .++
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iA 165 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIG 165 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHH
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHH
Confidence 11110 00000 00011222333334422 345689999999 999
Q ss_pred HHhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 193 RSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 193 r~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++++.+|++ ++||||++.++....+.+++.
T Consensus 166 raL~~~p~l--llLDEPts~LD~~~~~~l~~~ 195 (257)
T 1g6h_A 166 RALMTNPKM--IVMDEPIAGVAPGLAHDIFNH 195 (257)
T ss_dssp HHHHTCCSE--EEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHcCCCE--EEEeCCccCCCHHHHHHHHHH
Confidence 999999998 999999999999887765543
No 29
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.74 E-value=1.2e-17 Score=144.90 Aligned_cols=139 Identities=17% Similarity=0.194 Sum_probs=98.9
Q ss_pred eEEeecceeec---CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCccc-
Q 023675 82 ILWHKNSVDKR---DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAED- 155 (279)
Q Consensus 82 i~~~~~~~~~~---~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~~- 155 (279)
+++++++++|. ++.||++++ ++++|+||||||||||+++|+|++ .|++|.|.++|.++... ....++|.++.
T Consensus 2 l~~~~l~~~y~~~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~ 79 (240)
T 2onk_A 2 FLKVRAEKRLGNFRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVPQDY 79 (240)
T ss_dssp CEEEEEEEEETTEEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCCSSC
T ss_pred EEEEEEEEEeCCEEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCcCchhhCcEEEEcCCC
Confidence 56778888884 345999999 999999999999999999999999 89999999999887321 11122222211
Q ss_pred -------HHHHHH----------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675 156 -------RVENIR----------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (279)
Q Consensus 156 -------~~~~~~----------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l 213 (279)
..+.+. ....+..++...++.. ....+|+++++| .++++++.+|++ ++||||++.+
T Consensus 80 ~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~l--llLDEPts~L 157 (240)
T 2onk_A 80 ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRL--LLLDEPLSAV 157 (240)
T ss_dssp CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSS--BEEESTTSSC
T ss_pred ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcccC
Confidence 011110 0111223334444422 345689999999 999999999999 9999999999
Q ss_pred hccChhhHHHH
Q 023675 214 EARDPKGLYKL 224 (279)
Q Consensus 214 ~~R~~~~l~~~ 224 (279)
+....+.+++.
T Consensus 158 D~~~~~~~~~~ 168 (240)
T 2onk_A 158 DLKTKGVLMEE 168 (240)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99887765543
No 30
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.74 E-value=4.5e-18 Score=150.77 Aligned_cols=141 Identities=18% Similarity=0.161 Sum_probs=100.7
Q ss_pred CeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc--cc----cccCC
Q 023675 81 NILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR--HG----LNRDL 149 (279)
Q Consensus 81 ~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~--~~----~~~~~ 149 (279)
.+++++++++|..+ .||++++|++++|+|+||||||||+++|+|++ .|++|.|.++|.++. .. ....+
T Consensus 21 ~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE-PATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 48899999999653 39999999999999999999999999999999 899999999998764 10 11111
Q ss_pred CCCccc----------HHHHHH----------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCC
Q 023675 150 SFKAED----------RVENIR----------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 150 ~~~~~~----------~~~~~~----------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
+|.+++ ..+.+. ....+..++...++.. .+..+|+++++| .++++++.+
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~ 179 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQ 179 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCC
Confidence 111111 011100 0111223333344432 345689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
|++ ++||||++.++....+.+++.
T Consensus 180 p~l--LlLDEPts~LD~~~~~~l~~~ 203 (279)
T 2ihy_A 180 PQV--LILDEPAAGLDFIARESLLSI 203 (279)
T ss_dssp CSE--EEEESTTTTCCHHHHHHHHHH
T ss_pred CCE--EEEeCCccccCHHHHHHHHHH
Confidence 998 999999999999887765543
No 31
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.74 E-value=5e-18 Score=156.00 Aligned_cols=141 Identities=17% Similarity=0.132 Sum_probs=99.9
Q ss_pred CeEEeecceeecC-----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCc
Q 023675 81 NILWHKNSVDKRD-----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~-----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~ 153 (279)
.+++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++... ....++|.+
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 89 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGRIYFGDRDVTYLPPKDRNISMVF 89 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCceEEEECCEECCCCChhhCcEEEEe
Confidence 4788888888864 349999999999999999999999999999999 89999999999887421 011122211
Q ss_pred ccH--------HHHHH------------HHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeC
Q 023675 154 EDR--------VENIR------------RIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDV 208 (279)
Q Consensus 154 ~~~--------~~~~~------------~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~ 208 (279)
++. .+.+. ....+..++...++.. ....+|++++|| .++|+++.+|++ ++|||
T Consensus 90 Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~l--LLLDE 167 (372)
T 1v43_A 90 QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDV--LLMDE 167 (372)
T ss_dssp C------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSE--EEEES
T ss_pred cCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE--EEEcC
Confidence 110 00000 0011222333334322 344688899999 999999999998 99999
Q ss_pred CccchhccChhhHHHH
Q 023675 209 PLQVCEARDPKGLYKL 224 (279)
Q Consensus 209 p~~~l~~R~~~~l~~~ 224 (279)
|++.|+......+.+.
T Consensus 168 P~s~LD~~~r~~l~~~ 183 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAE 183 (372)
T ss_dssp TTTTSCHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHH
Confidence 9999999887765543
No 32
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.74 E-value=4.7e-18 Score=147.75 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=97.5
Q ss_pred eEEeecceeec-CC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cccCCCC
Q 023675 82 ILWHKNSVDKR-DR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNRDLSF 151 (279)
Q Consensus 82 i~~~~~~~~~~-~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~~~~~ 151 (279)
+++++++++|. .+ .||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.++... +...++|
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 56788888883 22 38999999999999999999999999999999 89999999999887321 1111222
Q ss_pred Ccc-------cHHHHH----------HHHHHHHHHHHhCCcc------------hhcccCChHHHHH-HHHHHhCCCCCc
Q 023675 152 KAE-------DRVENI----------RRIGEVAKLFADAGVI------------CIACLISPYRKDR-DACRSMLPEGDF 201 (279)
Q Consensus 152 ~~~-------~~~~~~----------~~v~~~~~~~~~~~~~------------~i~~~~~~~~~~r-~~ar~l~~~~~~ 201 (279)
.++ ...+.+ ..+.+....+.-.... ..+..+|+++++| .++++++.+|++
T Consensus 81 v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 160 (243)
T 1mv5_A 81 VSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKI 160 (243)
T ss_dssp ECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCE
Confidence 111 011110 1111222111111111 1234689999999 999999999998
Q ss_pred cEEEEeCCccchhccChhhHHHHH
Q 023675 202 IEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 202 i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
++||||++.++....+.+++.+
T Consensus 161 --llLDEPts~LD~~~~~~i~~~l 182 (243)
T 1mv5_A 161 --LMLDEATASLDSESESMVQKAL 182 (243)
T ss_dssp --EEEECCSCSSCSSSCCHHHHHH
T ss_pred --EEEECCcccCCHHHHHHHHHHH
Confidence 9999999999998887765543
No 33
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.74 E-value=9.9e-18 Score=152.78 Aligned_cols=140 Identities=17% Similarity=0.199 Sum_probs=99.3
Q ss_pred eEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc--cccCCCCCcc-
Q 023675 82 ILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG--LNRDLSFKAE- 154 (279)
Q Consensus 82 i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~--~~~~~~~~~~- 154 (279)
+++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|++|.|+++|.++... ....++|.++
T Consensus 2 l~~~~l~~~y~~~~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~-~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 2 IEIESLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEEEEEEEECSSCEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEEEECCEEEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC-CCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 456777777753 459999999999999999999999999999999 89999999999887421 0111222111
Q ss_pred -------cHHHHHHHH---------HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccch
Q 023675 155 -------DRVENIRRI---------GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVC 213 (279)
Q Consensus 155 -------~~~~~~~~v---------~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l 213 (279)
...+.+... ..+...+...++.. ....+|+++++| .++|+++.+|++ ++||||++.+
T Consensus 81 ~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~l--LLLDEP~s~L 158 (348)
T 3d31_A 81 YSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKI--LLLDEPLSAL 158 (348)
T ss_dssp CCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSE--EEEESSSTTS
T ss_pred cccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECccccC
Confidence 111111110 11222333333322 355689999999 999999999998 9999999999
Q ss_pred hccChhhHHHH
Q 023675 214 EARDPKGLYKL 224 (279)
Q Consensus 214 ~~R~~~~l~~~ 224 (279)
+......+.+.
T Consensus 159 D~~~~~~l~~~ 169 (348)
T 3d31_A 159 DPRTQENAREM 169 (348)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 99887765543
No 34
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.73 E-value=3.6e-17 Score=144.39 Aligned_cols=144 Identities=18% Similarity=0.182 Sum_probs=101.7
Q ss_pred CCeEEeecceeecC---C-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 80 TNILWHKNSVDKRD---R-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 80 ~~i~~~~~~~~~~~---~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
..+++++++++|.. + .||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... +..
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY-QPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEEGGGBCHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEcccCCHHHHhc
Confidence 46899999999964 2 28999999999999999999999999999999 89999999999887421 000
Q ss_pred CCCCCc-------ccHHHHHH----------HH------HHHHHHHHhC--Cc----chhcccCChHHHHH-HHHHHhCC
Q 023675 148 DLSFKA-------EDRVENIR----------RI------GEVAKLFADA--GV----ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 148 ~~~~~~-------~~~~~~~~----------~v------~~~~~~~~~~--~~----~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
.++|.+ ....+.+. .+ ..+...+... ++ ...+..+|+++++| .++|+++.
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 011100 01111110 00 0011122221 22 12345689999999 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|++ ++||||++.++....+.+++.+.
T Consensus 174 ~p~l--llLDEPts~LD~~~~~~i~~~l~ 200 (271)
T 2ixe_A 174 KPRL--LILDNATSALDAGNQLRVQRLLY 200 (271)
T ss_dssp CCSE--EEEESTTTTCCHHHHHHHHHHHH
T ss_pred CCCE--EEEECCccCCCHHHHHHHHHHHH
Confidence 9998 99999999999988887776554
No 35
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.73 E-value=1.7e-17 Score=144.76 Aligned_cols=142 Identities=18% Similarity=0.103 Sum_probs=96.0
Q ss_pred eEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHc--cccCCccEEEEcCeecccc-----cccCC
Q 023675 82 ILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQA--LHWRGKLTYILDGDNCRHG-----LNRDL 149 (279)
Q Consensus 82 i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~--l~~~~~G~i~ldgd~i~~~-----~~~~~ 149 (279)
+++++++++|..+ .||++++|++++|+|+||||||||+++|+|+ + .|.+|.|+++|.++... ....+
T Consensus 4 l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 4 LEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEY-TVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred EEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCceEEEECCEECCCCCHHHHHhCcE
Confidence 6788888888643 3999999999999999999999999999998 6 78899999999887421 01112
Q ss_pred CCCccc--------HHHHHHH---------------HHHHHHHHHhCCc-ch----hccc-CChHHHHH-HHHHHhCCCC
Q 023675 150 SFKAED--------RVENIRR---------------IGEVAKLFADAGV-IC----IACL-ISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 150 ~~~~~~--------~~~~~~~---------------v~~~~~~~~~~~~-~~----i~~~-~~~~~~~r-~~ar~l~~~~ 199 (279)
++.+++ ..+.+.. ...+..++...++ .. .... +|+++++| .++++++.+|
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 222111 0111100 0112222333333 11 2334 88999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHh
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
++ ++||||++.++......+++.++
T Consensus 163 ~l--llLDEPts~LD~~~~~~l~~~l~ 187 (250)
T 2d2e_A 163 TY--AVLDETDSGLDIDALKVVARGVN 187 (250)
T ss_dssp SE--EEEECGGGTTCHHHHHHHHHHHH
T ss_pred CE--EEEeCCCcCCCHHHHHHHHHHHH
Confidence 98 99999999999988877665443
No 36
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.72 E-value=2.5e-17 Score=145.02 Aligned_cols=140 Identities=19% Similarity=0.241 Sum_probs=98.3
Q ss_pred eEEeecceeec--C--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCC
Q 023675 82 ILWHKNSVDKR--D--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLS 150 (279)
Q Consensus 82 i~~~~~~~~~~--~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~ 150 (279)
+++++++++|. . +.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.++... ....++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI-EPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEEEECCEECchHHhhhhEE
Confidence 56778888885 2 238999999999999999999999999999999 89999999999876311 001111
Q ss_pred CCcc---------cHHHHHHH-----------HHHHHHHHHhCCcc--h----hcccCChHHHHH-HHHHHhCCCCCccE
Q 023675 151 FKAE---------DRVENIRR-----------IGEVAKLFADAGVI--C----IACLISPYRKDR-DACRSMLPEGDFIE 203 (279)
Q Consensus 151 ~~~~---------~~~~~~~~-----------v~~~~~~~~~~~~~--~----i~~~~~~~~~~r-~~ar~l~~~~~~i~ 203 (279)
|.++ ...+.+.. ...+..++...++. . ....+|+++++| .++++++.+|++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~l-- 159 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDI-- 159 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSE--
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCE--
Confidence 1111 11111110 01122233334443 2 345689999999 999999999998
Q ss_pred EEEeCCccchhccChhhHHHH
Q 023675 204 VFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 204 i~ld~p~~~l~~R~~~~l~~~ 224 (279)
++||||++.++....+.+++.
T Consensus 160 llLDEPts~LD~~~~~~l~~~ 180 (266)
T 2yz2_A 160 LILDEPLVGLDREGKTDLLRI 180 (266)
T ss_dssp EEEESTTTTCCHHHHHHHHHH
T ss_pred EEEcCccccCCHHHHHHHHHH
Confidence 999999999999887765543
No 37
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.71 E-value=3e-17 Score=144.57 Aligned_cols=146 Identities=17% Similarity=0.031 Sum_probs=102.1
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHcc-ccCCccEEEEcCeeccccc-----ccC
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQAL-HWRGKLTYILDGDNCRHGL-----NRD 148 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l-~~~~~G~i~ldgd~i~~~~-----~~~ 148 (279)
..+++++++++|..+ .||++++|++++|+|+||||||||+++|+|++ ..|.+|.|+++|.++...- ...
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred ceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 358999999999643 39999999999999999999999999999984 2688999999998874210 011
Q ss_pred CCCCccc--------HHHHHH------------------H-HHHHHHHHHhCCcc----h-hcc-cCChHHHHH-HHHHH
Q 023675 149 LSFKAED--------RVENIR------------------R-IGEVAKLFADAGVI----C-IAC-LISPYRKDR-DACRS 194 (279)
Q Consensus 149 ~~~~~~~--------~~~~~~------------------~-v~~~~~~~~~~~~~----~-i~~-~~~~~~~~r-~~ar~ 194 (279)
++|.++. ..+.+. . ...+..++...++. . ... .+|+++++| .++++
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAra 178 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQM 178 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHH
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHH
Confidence 1111110 001000 0 01122233333442 1 223 489999999 99999
Q ss_pred hCCCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 195 MLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 195 l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
++.+|++ ++||||++.++....+.+++.++.
T Consensus 179 L~~~p~l--LlLDEPts~LD~~~~~~l~~~l~~ 209 (267)
T 2zu0_C 179 AVLEPEL--CILDESDSGLDIDALKVVADGVNS 209 (267)
T ss_dssp HHHCCSE--EEEESTTTTCCHHHHHHHHHHHHT
T ss_pred HHhCCCE--EEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999998 999999999999988887776554
No 38
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.71 E-value=1e-16 Score=140.81 Aligned_cols=141 Identities=17% Similarity=0.115 Sum_probs=100.2
Q ss_pred eEEeecceeecC---------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccCCC-
Q 023675 82 ILWHKNSVDKRD---------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRDLS- 150 (279)
Q Consensus 82 i~~~~~~~~~~~---------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~~~- 150 (279)
+++++++++|.. +.||+++ |++++|+|+||||||||+++|+|++ |++|.|.++|.++... ....++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~--p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS--CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC--CCCcEEEECCEECcchHHhhheEE
Confidence 466777777754 2389999 9999999999999999999999988 8899999999876421 011233
Q ss_pred CCccc------HHHHHHHH--------HHHHHHHHhCCcc-h----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCc
Q 023675 151 FKAED------RVENIRRI--------GEVAKLFADAGVI-C----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPL 210 (279)
Q Consensus 151 ~~~~~------~~~~~~~v--------~~~~~~~~~~~~~-~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~ 210 (279)
|.++. ..+.+... ..+...+...++. . .+..+|+++++| .++++++.+|++ ++||||+
T Consensus 79 ~v~Q~~~l~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPt 156 (263)
T 2pjz_A 79 NLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEI--VGLDEPF 156 (263)
T ss_dssp CCGGGSCTTSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSE--EEEECTT
T ss_pred EeCCCCccCCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCc
Confidence 33322 11222110 1122333334443 2 345689999999 999999999998 9999999
Q ss_pred cchhccChhhHHHHHhC
Q 023675 211 QVCEARDPKGLYKLARE 227 (279)
Q Consensus 211 ~~l~~R~~~~l~~~~~~ 227 (279)
+.++....+.+++.++.
T Consensus 157 s~LD~~~~~~l~~~L~~ 173 (263)
T 2pjz_A 157 ENVDAARRHVISRYIKE 173 (263)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHH
Confidence 99999888877766543
No 39
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.70 E-value=9.5e-17 Score=140.88 Aligned_cols=142 Identities=19% Similarity=0.166 Sum_probs=98.1
Q ss_pred CCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 80 TNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
..+++++++++|..+ .||++++|++++|+|+||||||||+++|+|++ .+ +|.|+++|.++... +..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~-~G~I~i~g~~i~~~~~~~~~~ 93 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY-DA-EGDIKIGGKNVNKYNRNSIRS 93 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CC-EEEEEETTEEGGGBCHHHHHT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC-CC-CeEEEECCEEhhhcCHHHHhc
Confidence 458999999999642 28999999999999999999999999999999 56 89999999887421 111
Q ss_pred CCCCCcc-------cHHHHHHH------HHHHHHHHHhCCcc---------------hhcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAE-------DRVENIRR------IGEVAKLFADAGVI---------------CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~-------~~~~~~~~------v~~~~~~~~~~~~~---------------~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.++|.++ ...+.+.. ..++...+...++. ..+..+|+++++| .++++++.+
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~ 173 (260)
T 2ghi_A 94 IIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKD 173 (260)
T ss_dssp TEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHC
T ss_pred cEEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcC
Confidence 1111111 11111110 00111111111111 1234689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
|++ ++||||++.++....+.+++.+
T Consensus 174 p~l--llLDEPts~LD~~~~~~i~~~l 198 (260)
T 2ghi_A 174 PKI--VIFDEATSSLDSKTEYLFQKAV 198 (260)
T ss_dssp CSE--EEEECCCCTTCHHHHHHHHHHH
T ss_pred CCE--EEEECccccCCHHHHHHHHHHH
Confidence 998 9999999999998877655543
No 40
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.70 E-value=1e-17 Score=145.04 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=96.0
Q ss_pred CeEEeecceeecC--C-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec--ccc--cc---
Q 023675 81 NILWHKNSVDKRD--R-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC--RHG--LN--- 146 (279)
Q Consensus 81 ~i~~~~~~~~~~~--~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i--~~~--~~--- 146 (279)
.+++++++++|.. + .||++++|++++|+|+||||||||+++|+|++ .|.+|.|.++|.-- .+. +.
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~i~~v~Q~~~~~~~t 81 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHVAIKGSVAYVPQQAWIQNDS 81 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS-EEEEEEEEECSCEEEECSSCCCCSEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEEEEcCCCcCCCcC
Confidence 3788888888862 2 29999999999999999999999999999999 89999999998411 000 00
Q ss_pred --cCCCCCcccHHHHHHHHHHHHHHHHhCC---------cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchh
Q 023675 147 --RDLSFKAEDRVENIRRIGEVAKLFADAG---------VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCE 214 (279)
Q Consensus 147 --~~~~~~~~~~~~~~~~v~~~~~~~~~~~---------~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~ 214 (279)
..+.+...........+.+...+....+ ....+..+|+++++| .++++++.+|++ ++||||++.++
T Consensus 82 v~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l--llLDEPts~LD 159 (237)
T 2cbz_A 82 LRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI--YLFDDPLSAVD 159 (237)
T ss_dssp HHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE--EEEESTTTTSC
T ss_pred HHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE--EEEeCcccccC
Confidence 0000000000001111111111111111 112345689999999 999999999998 99999999999
Q ss_pred ccChhhHHHHH
Q 023675 215 ARDPKGLYKLA 225 (279)
Q Consensus 215 ~R~~~~l~~~~ 225 (279)
....+.+++.+
T Consensus 160 ~~~~~~i~~~l 170 (237)
T 2cbz_A 160 AHVGKHIFENV 170 (237)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 98877777655
No 41
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.70 E-value=3.3e-17 Score=171.98 Aligned_cols=173 Identities=13% Similarity=0.194 Sum_probs=114.9
Q ss_pred cCCCCeEEeecceeecCCc--------ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----
Q 023675 77 AKSTNILWHKNSVDKRDRQ--------QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG---- 144 (279)
Q Consensus 77 ~~~~~i~~~~~~~~~~~~~--------sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~---- 144 (279)
+..+.|+|+|++|+|+++. ||++++|+.++|||+||||||||+++|.|++ +|.+|.|++||.|+++.
T Consensus 1072 ~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~-~p~~G~I~iDG~di~~i~~~~ 1150 (1321)
T 4f4c_A 1072 KLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFY-DTLGGEIFIDGSEIKTLNPEH 1150 (1321)
T ss_dssp CCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSS-CCSSSEEEETTEETTTBCHHH
T ss_pred CCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCc-cCCCCEEEECCEEhhhCCHHH
Confidence 3457899999999997542 8999999999999999999999999999999 89999999999998531
Q ss_pred cccCC--------------------CCCccc-HHHHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHH
Q 023675 145 LNRDL--------------------SFKAED-RVENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACR 193 (279)
Q Consensus 145 ~~~~~--------------------~~~~~~-~~~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar 193 (279)
++..+ +..+.+ ..+.+....+.+. ... ..|+. ..+..+|+||+|| .+||
T Consensus 1151 lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiAR 1230 (1321)
T 4f4c_A 1151 TRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIAR 1230 (1321)
T ss_dssp HHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHH
T ss_pred HHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHH
Confidence 11111 111110 0111111111111 111 11222 2345689999999 9999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCC-CCCccccCcCCCCCCCceEEEc
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV-KGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~-~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
+++++|++ ++||||++.++....+.+.+.+++..- .....+-+.+..-..+|-++..
T Consensus 1231 Allr~~~I--LiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vl 1288 (1321)
T 4f4c_A 1231 ALVRNPKI--LLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVV 1288 (1321)
T ss_dssp HHHSCCSE--EEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEE
T ss_pred HHHhCCCE--EEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEE
Confidence 99999998 999999999998876666665553211 1122223334443446655554
No 42
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.70 E-value=1.3e-16 Score=137.39 Aligned_cols=139 Identities=14% Similarity=0.155 Sum_probs=94.2
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCc
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~ 153 (279)
.+++++++++|.. +.||++++|++++|+||||||||||+++|+|++ .|.+|.|.++|.--. +.....+-+
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~i~~--v~q~~~~~~ 82 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRISF--CSQFSWIMP 82 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEEEECSCEEE--ECSSCCCCS
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCccEEEECCEEEE--EecCCcccC
Confidence 4788999999942 239999999999999999999999999999999 899999999984110 000000000
Q ss_pred ccHHHHH-----------HHHHH---HHHHHHhCCc------chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 154 EDRVENI-----------RRIGE---VAKLFADAGV------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 154 ~~~~~~~-----------~~v~~---~~~~~~~~~~------~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
....+.+ ....+ +...+..... ...+..+|+++++| .++++++.+|++ ++||||++.
T Consensus 83 ~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~l--llLDEPts~ 160 (229)
T 2pze_A 83 GTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGY 160 (229)
T ss_dssp BCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSE--EEEESTTTT
T ss_pred CCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCE--EEEECcccC
Confidence 0111111 01000 0111111110 01235789999999 999999999998 999999999
Q ss_pred hhccChhhHHHH
Q 023675 213 CEARDPKGLYKL 224 (279)
Q Consensus 213 l~~R~~~~l~~~ 224 (279)
++....+.+++.
T Consensus 161 LD~~~~~~i~~~ 172 (229)
T 2pze_A 161 LDVLTEKEIFES 172 (229)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999887776653
No 43
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.70 E-value=1e-16 Score=168.31 Aligned_cols=143 Identities=18% Similarity=0.182 Sum_probs=101.9
Q ss_pred CCCCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675 78 KSTNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L 145 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~ 145 (279)
..+.|+++|++|+|+.+ .||++++|++++|||+||||||||+++|.|++ +|.+|.|.+||.++++. +
T Consensus 412 ~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~-~~~~G~I~idG~~i~~~~~~~l 490 (1321)
T 4f4c_A 412 IKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYY-DVLKGKITIDGVDVRDINLEFL 490 (1321)
T ss_dssp CCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSS-CCSEEEEEETTEETTTSCHHHH
T ss_pred CCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccc-ccccCcccCCCccchhccHHHH
Confidence 35689999999999743 28999999999999999999999999999999 99999999999988631 1
Q ss_pred ccCCCCCcc-------------------cHHHHHHHHHHHHH---HHH--hCCcc----hhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAE-------------------DRVENIRRIGEVAK---LFA--DAGVI----CIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~-------------------~~~~~~~~v~~~~~---~~~--~~~~~----~i~~~~~~~~~~r-~~ar~l~ 196 (279)
+..++|.++ ...+.+....+.+. ... ..|.. ..+..+|+||+|| .+||+++
T Consensus 491 r~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~ 570 (1321)
T 4f4c_A 491 RKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALV 570 (1321)
T ss_dssp HHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHT
T ss_pred hhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHc
Confidence 111111111 01111111111111 111 12222 2345689999999 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
++|++ ++||||++.++....+.+.+
T Consensus 571 ~~~~I--liLDE~tSaLD~~te~~i~~ 595 (1321)
T 4f4c_A 571 RNPKI--LLLDEATSALDAESEGIVQQ 595 (1321)
T ss_dssp TCCSE--EEEESTTTTSCTTTHHHHHH
T ss_pred cCCCE--EEEecccccCCHHHHHHHHH
Confidence 99998 99999999999887554443
No 44
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.70 E-value=8.6e-17 Score=148.64 Aligned_cols=145 Identities=17% Similarity=0.175 Sum_probs=100.4
Q ss_pred CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
...|++++++++|.. +.||++++|++++|+||||||||||+++|+|++ . .+|.|+++|.++... +..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL-N-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS-E-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC-C-CCeEEEECCEECCcCChHHHhC
Confidence 357999999999942 239999999999999999999999999999998 5 789999999887421 011
Q ss_pred CCCCCcc-------cHHHHHHH-----HHHHHHHHHhCCcch----hcc-----------cCChHHHHH-HHHHHhCCCC
Q 023675 148 DLSFKAE-------DRVENIRR-----IGEVAKLFADAGVIC----IAC-----------LISPYRKDR-DACRSMLPEG 199 (279)
Q Consensus 148 ~~~~~~~-------~~~~~~~~-----v~~~~~~~~~~~~~~----i~~-----------~~~~~~~~r-~~ar~l~~~~ 199 (279)
.+++.++ ...+.+.. -..+...+...++.. ... .+|++++|| .++|+++.+|
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P 174 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 174 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTC
T ss_pred CEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCC
Confidence 1111111 11111100 001111112222211 111 289999999 9999999999
Q ss_pred CccEEEEeCCccchhccChhhHHHHHhC
Q 023675 200 DFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 200 ~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
++ ++||||++.|+......+...++.
T Consensus 175 ~l--LLLDEPts~LD~~~~~~l~~~l~~ 200 (390)
T 3gd7_A 175 KI--LLLDEPSAHLDPVTYQIIRRTLKQ 200 (390)
T ss_dssp CE--EEEESHHHHSCHHHHHHHHHHHHT
T ss_pred CE--EEEeCCccCCCHHHHHHHHHHHHH
Confidence 98 999999999999887777665554
No 45
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.69 E-value=3.1e-17 Score=159.43 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=102.1
Q ss_pred CCCeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.|+++|++|+|+. +.||++++|++++|+||||||||||+++|+|++ +|.+|.|.+||.++.+. ++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~-~~~~G~i~i~g~~i~~~~~~~~r~ 417 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLI-DPERGRVEVDELDVRTVKLKDLRG 417 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSS-CCSEEEEEESSSBGGGBCHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCcEEEECCEEcccCCHHHHHh
Confidence 467999999999953 228999999999999999999999999999999 89999999999988531 111
Q ss_pred CCCCCcc-------cHHHH------------HHHHHHHH---HHHHh--CCcc----hhcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAE-------DRVEN------------IRRIGEVA---KLFAD--AGVI----CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~-------~~~~~------------~~~v~~~~---~~~~~--~~~~----~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.+++.++ ..+++ +....+.+ ..+.. .|.. ..+..+|++++|| .+||+++.+
T Consensus 418 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~ 497 (587)
T 3qf4_A 418 HISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKK 497 (587)
T ss_dssp HEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTC
T ss_pred heEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcC
Confidence 1111110 11111 11111111 11111 1221 2345689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHHHh
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
|++ ++||||++.++....+.+.+.++
T Consensus 498 p~i--lllDEpts~LD~~~~~~i~~~l~ 523 (587)
T 3qf4_A 498 PKV--LILDDCTSSVDPITEKRILDGLK 523 (587)
T ss_dssp CSE--EEEESCCTTSCHHHHHHHHHHHH
T ss_pred CCE--EEEECCcccCCHHHHHHHHHHHH
Confidence 998 99999999999988777665443
No 46
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.69 E-value=1.8e-17 Score=160.98 Aligned_cols=145 Identities=17% Similarity=0.215 Sum_probs=101.7
Q ss_pred CCCeEEeecceeecC--C-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRD--R-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~--~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.++++|++++|+. + .||++++|++++|+|+||||||||+++|+|++ +|++|.|.+||.++.+. ++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY-DVDSGSICLDGHDVRDYKLTNLRR 417 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCCEEEECCEEhhhCCHHHHhc
Confidence 356999999999974 2 29999999999999999999999999999999 89999999999887421 111
Q ss_pred CCCCCccc-------HHHHHHH-------HHHHHHHHHhCC-----------cc----hhcccCChHHHHH-HHHHHhCC
Q 023675 148 DLSFKAED-------RVENIRR-------IGEVAKLFADAG-----------VI----CIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 148 ~~~~~~~~-------~~~~~~~-------v~~~~~~~~~~~-----------~~----~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
.+++.+++ .++.+.. ..++...+...+ +. ..+..+|+|+++| .++|+++.
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~ 497 (582)
T 3b5x_A 418 HFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLR 497 (582)
T ss_pred CeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHc
Confidence 12221111 0111100 000111111111 11 1234689999999 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|++ ++||||++.++....+.+.+.+.
T Consensus 498 ~p~i--lllDEpts~LD~~~~~~i~~~l~ 524 (582)
T 3b5x_A 498 DAPV--LILDEATSALDTESERAIQAALD 524 (582)
T ss_pred CCCE--EEEECccccCCHHHHHHHHHHHH
Confidence 9998 99999999999988777665443
No 47
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=5.1e-18 Score=165.30 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=100.6
Q ss_pred CCCCeEEeecceeecC------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 78 KSTNILWHKNSVDKRD------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
..+.|+++|++|+|.. +.||++++|++++|+||||||||||+++|+|++ +|++|.|.+||.++.+. ++.
T Consensus 351 ~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~i~~~~~~~~r~ 429 (598)
T 3qf4_B 351 VRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY-DVDRGQILVDGIDIRKIKRSSLRS 429 (598)
T ss_dssp CCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSS-CCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCc-CCCCeEEEECCEEhhhCCHHHHHh
Confidence 3467999999999964 238999999999999999999999999999999 89999999999988531 111
Q ss_pred CCCCCcc-------cHHHHHH---------HHHHHH------HHHHh--CCc----chhcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAE-------DRVENIR---------RIGEVA------KLFAD--AGV----ICIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~-------~~~~~~~---------~v~~~~------~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.+++.++ ..++.+. .+.+.. ..... .|. ...+..+|+|++|| .+||+++.+
T Consensus 430 ~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~ 509 (598)
T 3qf4_B 430 SIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLAN 509 (598)
T ss_dssp HEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTC
T ss_pred ceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcC
Confidence 1111111 1111111 011110 00111 011 11234689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
|++ ++||||++.++....+.+.+.
T Consensus 510 p~i--lllDEpts~LD~~~~~~i~~~ 533 (598)
T 3qf4_B 510 PKI--LILDEATSNVDTKTEKSIQAA 533 (598)
T ss_dssp CSE--EEECCCCTTCCHHHHHHHHHH
T ss_pred CCE--EEEECCccCCCHHHHHHHHHH
Confidence 998 999999999998877665543
No 48
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.67 E-value=2.1e-16 Score=153.30 Aligned_cols=143 Identities=22% Similarity=0.233 Sum_probs=100.6
Q ss_pred CCCeEEeecceeecCC-------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRDR-------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~-------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.++++|++|+|+++ .||++++|++++|+||||||||||+++|+|++ +|.+|+|.+||.++.+. +..
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~r~ 415 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSGQILIDGHNIKDFLTGSLRN 415 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEEEEEETTEEGGGSCHHHHHH
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEEEECCEEhhhCCHHHHhh
Confidence 4679999999999642 28999999999999999999999999999999 89999999999987531 111
Q ss_pred CCCCCcc-------cHHHHH---------HHHHHHHH------HHHh--CCc----chhcccCChHHHHH-HHHHHhCCC
Q 023675 148 DLSFKAE-------DRVENI---------RRIGEVAK------LFAD--AGV----ICIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 148 ~~~~~~~-------~~~~~~---------~~v~~~~~------~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
.+++.++ ..++.+ ..+.+... .... .|. ...+..+|+|++|| .+||+++.+
T Consensus 416 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~ 495 (578)
T 4a82_A 416 QIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495 (578)
T ss_dssp TEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHC
T ss_pred heEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcC
Confidence 1111111 111111 01111111 1111 011 12344689999999 999999999
Q ss_pred CCccEEEEeCCccchhccChhhHHHH
Q 023675 199 GDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
|++ ++||||++.++....+.+.+.
T Consensus 496 p~i--lllDEpts~LD~~~~~~i~~~ 519 (578)
T 4a82_A 496 PPI--LILDEATSALDLESESIIQEA 519 (578)
T ss_dssp CSE--EEEESTTTTCCHHHHHHHHHH
T ss_pred CCE--EEEECccccCCHHHHHHHHHH
Confidence 998 999999999998876655543
No 49
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.67 E-value=2.5e-16 Score=152.94 Aligned_cols=143 Identities=17% Similarity=0.216 Sum_probs=100.7
Q ss_pred CCCeEEeecceeecC--C-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----ccc
Q 023675 79 STNILWHKNSVDKRD--R-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LNR 147 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~--~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~~ 147 (279)
.+.++++|++++|+. + .||++++|++++|+||||||||||+++|+|++ +|++|.|.+||.++.+. ++.
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~~~~~~~~~~~~ 417 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHILMDGHDLREYTLASLRN 417 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEEEETTEETTTBCHHHHHH
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc-CCCCCeEEECCEEccccCHHHHHh
Confidence 357999999999973 2 29999999999999999999999999999999 89999999999887431 111
Q ss_pred CCCCCcc-------cHHHHHHH-------HHHHHHHHHhCCc---------------chhcccCChHHHHH-HHHHHhCC
Q 023675 148 DLSFKAE-------DRVENIRR-------IGEVAKLFADAGV---------------ICIACLISPYRKDR-DACRSMLP 197 (279)
Q Consensus 148 ~~~~~~~-------~~~~~~~~-------v~~~~~~~~~~~~---------------~~i~~~~~~~~~~r-~~ar~l~~ 197 (279)
.+++.++ ..++.+.. ..++...+...++ ...+..+|+|++|| .++|+++.
T Consensus 418 ~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~ 497 (582)
T 3b60_A 418 QVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLR 497 (582)
T ss_dssp TEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHH
T ss_pred hCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHh
Confidence 1111111 11111110 0011111111111 11245689999999 99999999
Q ss_pred CCCccEEEEeCCccchhccChhhHHHH
Q 023675 198 EGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 198 ~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+|++ ++||||++.++....+.+.+.
T Consensus 498 ~p~i--lllDEpts~LD~~~~~~i~~~ 522 (582)
T 3b60_A 498 DSPI--LILDEATSALDTESERAIQAA 522 (582)
T ss_dssp CCSE--EEEETTTSSCCHHHHHHHHHH
T ss_pred CCCE--EEEECccccCCHHHHHHHHHH
Confidence 9998 999999999999887765543
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.67 E-value=2.3e-16 Score=153.57 Aligned_cols=143 Identities=24% Similarity=0.269 Sum_probs=100.2
Q ss_pred CCC-eEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675 79 STN-ILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L 145 (279)
Q Consensus 79 ~~~-i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~ 145 (279)
.+. |+++|++++|+++ .||++++|++++|+|+||||||||+++|+|++ +|++|.|.+||.++.+. +
T Consensus 338 ~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~-~p~~G~i~~~g~~i~~~~~~~~ 416 (595)
T 2yl4_A 338 FQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLY-DPASGTISLDGHDIRQLNPVWL 416 (595)
T ss_dssp CCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSS-CCSEEEEEETTEETTTBCHHHH
T ss_pred CCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcEEEECCEEhhhCCHHHH
Confidence 356 9999999999642 28999999999999999999999999999999 89999999999887431 1
Q ss_pred ccCCCCCcc-------cHHHHH------------HHHHHHHHH------HHh--CCcch----hcccCChHHHHH-HHHH
Q 023675 146 NRDLSFKAE-------DRVENI------------RRIGEVAKL------FAD--AGVIC----IACLISPYRKDR-DACR 193 (279)
Q Consensus 146 ~~~~~~~~~-------~~~~~~------------~~v~~~~~~------~~~--~~~~~----i~~~~~~~~~~r-~~ar 193 (279)
...+++.++ ..++.+ +.+.+.... ... .+... .+..+|+|+++| .++|
T Consensus 417 ~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAr 496 (595)
T 2yl4_A 417 RSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIAR 496 (595)
T ss_dssp HHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHH
T ss_pred HhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 111111100 111111 111111111 111 01111 235689999999 9999
Q ss_pred HhCCCCCccEEEEeCCccchhccChhhHHHH
Q 023675 194 SMLPEGDFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 194 ~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+++.+|++ ++||||++.++....+.+.+.
T Consensus 497 al~~~p~i--lllDEpts~LD~~~~~~i~~~ 525 (595)
T 2yl4_A 497 ALLKNPKI--LLLDEATSALDAENEYLVQEA 525 (595)
T ss_dssp HHHHCCSE--EEEECCCSSCCHHHHHHHHHH
T ss_pred HHHcCCCE--EEEECcccCCCHHHHHHHHHH
Confidence 99999998 999999999999877665543
No 51
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.67 E-value=2.2e-16 Score=137.63 Aligned_cols=139 Identities=13% Similarity=0.095 Sum_probs=95.1
Q ss_pred eEEeeccee-ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c-------ccCC
Q 023675 82 ILWHKNSVD-KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L-------NRDL 149 (279)
Q Consensus 82 i~~~~~~~~-~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~-------~~~~ 149 (279)
+++++++++ ..++.||++++|++++|+|+||||||||+++|+|++ .|. |.|.++|.++... + ....
T Consensus 5 l~~~~l~~~~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~-~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~ 82 (249)
T 2qi9_C 5 MQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQ 82 (249)
T ss_dssp EEEEEEEETTTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCE-EEEEETTEEGGGSCHHHHHHHEEEECSCC
T ss_pred EEEEceEEEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCC-eEEEECCEECCcCCHHHHhceEEEECCCC
Confidence 556666553 234559999999999999999999999999999999 788 9999999886321 0 0111
Q ss_pred C-CCcccHHHHHHH-------HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC-------ccEEEEeCC
Q 023675 150 S-FKAEDRVENIRR-------IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD-------FIEVFMDVP 209 (279)
Q Consensus 150 ~-~~~~~~~~~~~~-------v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~-------~i~i~ld~p 209 (279)
. +......+.+.. ...+..++...++.. .+..+|+++++| .++++++.+|+ + ++||||
T Consensus 83 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l--llLDEP 160 (249)
T 2qi9_C 83 TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL--LLLDEP 160 (249)
T ss_dssp CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE--EEESST
T ss_pred ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE--EEEECC
Confidence 1 100011111110 011222333334322 345689999999 99999999998 8 999999
Q ss_pred ccchhccChhhHHHH
Q 023675 210 LQVCEARDPKGLYKL 224 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~ 224 (279)
++.++....+.+.+.
T Consensus 161 ts~LD~~~~~~l~~~ 175 (249)
T 2qi9_C 161 MNSLDVAQQSALDKI 175 (249)
T ss_dssp TTTCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHH
Confidence 999999887775543
No 52
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.66 E-value=7.5e-16 Score=134.60 Aligned_cols=136 Identities=12% Similarity=0.062 Sum_probs=93.3
Q ss_pred eEEeecceeec-CC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---c--cccc---
Q 023675 82 ILWHKNSVDKR-DR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---H--GLNR--- 147 (279)
Q Consensus 82 i~~~~~~~~~~-~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~--~~~~--- 147 (279)
+++++++++|. ++ .||++++|++++|+|+||||||||+++|+|++ .|.+|.|.+... +. + .+..
T Consensus 5 l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I~~~~~-i~~v~q~~~~~~~~t 82 (253)
T 2nq2_C 5 LSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIH-RPIQGKIEVYQS-IGFVPQFFSSPFAYS 82 (253)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSS-CCSEEEEEECSC-EEEECSCCCCSSCCB
T ss_pred EEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEEecc-EEEEcCCCccCCCCC
Confidence 67888888886 43 38999999999999999999999999999999 899999974321 10 0 0000
Q ss_pred ---CCCCCcc--------cHHHHHHHHHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCcc
Q 023675 148 ---DLSFKAE--------DRVENIRRIGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 148 ---~~~~~~~--------~~~~~~~~v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
.+.+... .......+ +...+...++.. .+..+|+++++| .++++++.+|++ ++||||++
T Consensus 83 v~enl~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~l--llLDEPts 157 (253)
T 2nq2_C 83 VLDIVLMGRSTHINTFAKPKSHDYQV---AMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKL--ILLDEPTS 157 (253)
T ss_dssp HHHHHHGGGGGGSCTTCCCCHHHHHH---HHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSE--EEESSSST
T ss_pred HHHHHHHhhhhhcccccCCCHHHHHH---HHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCcc
Confidence 0000000 00011111 222233334322 345689999999 999999999998 99999999
Q ss_pred chhccChhhHHHH
Q 023675 212 VCEARDPKGLYKL 224 (279)
Q Consensus 212 ~l~~R~~~~l~~~ 224 (279)
.++......+.+.
T Consensus 158 ~LD~~~~~~l~~~ 170 (253)
T 2nq2_C 158 ALDLANQDIVLSL 170 (253)
T ss_dssp TSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH
Confidence 9999887765543
No 53
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.62 E-value=1e-16 Score=167.82 Aligned_cols=142 Identities=18% Similarity=0.187 Sum_probs=99.3
Q ss_pred CCCCeEEeecceeecCC--------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----c
Q 023675 78 KSTNILWHKNSVDKRDR--------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----L 145 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~~--------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~ 145 (279)
..+.|+++|++|+|+.+ .||++++|++++|+|+||||||||+++|.|++ +|.+|.|.+||.+++.. +
T Consensus 384 ~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~-~~~~G~i~i~g~~i~~~~~~~~ 462 (1284)
T 3g5u_A 384 IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLY-DPLDGMVSIDGQDIRTINVRYL 462 (1284)
T ss_dssp CCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSS-CCSEEEEEETTEEGGGSCHHHH
T ss_pred CCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECCEEHHhCCHHHH
Confidence 34679999999999742 28999999999999999999999999999999 89999999999987531 1
Q ss_pred ccCCCCCcc-------cHHHHHH---------HHHHHH------HHHHh--CCc----chhcccCChHHHHH-HHHHHhC
Q 023675 146 NRDLSFKAE-------DRVENIR---------RIGEVA------KLFAD--AGV----ICIACLISPYRKDR-DACRSML 196 (279)
Q Consensus 146 ~~~~~~~~~-------~~~~~~~---------~v~~~~------~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l~ 196 (279)
+..+++.++ ..++.+. .+.+.+ ..... .+. ...+..+|++++|| .+||+++
T Consensus 463 r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred HhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHh
Confidence 111111111 1111111 111111 11111 111 12344689999999 9999999
Q ss_pred CCCCccEEEEeCCccchhccChhhHH
Q 023675 197 PEGDFIEVFMDVPLQVCEARDPKGLY 222 (279)
Q Consensus 197 ~~~~~i~i~ld~p~~~l~~R~~~~l~ 222 (279)
.+|++ ++||||++.++....+.+.
T Consensus 543 ~~p~i--liLDEpts~LD~~~~~~i~ 566 (1284)
T 3g5u_A 543 RNPKI--LLLDEATSALDTESEAVVQ 566 (1284)
T ss_dssp HCCSE--EEEESTTCSSCHHHHHHHH
T ss_pred cCCCE--EEEECCCCCCCHHHHHHHH
Confidence 99998 9999999999887554443
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.61 E-value=1.3e-15 Score=135.51 Aligned_cols=140 Identities=15% Similarity=0.176 Sum_probs=85.1
Q ss_pred CCeEEeecceeec---CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH
Q 023675 80 TNILWHKNSVDKR---DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR 156 (279)
Q Consensus 80 ~~i~~~~~~~~~~---~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~ 156 (279)
..++++++++.+. ++.||++++|++++|+|+||||||||+++|+|++ .|.+|.|+++|.-- . +.....+-+...
T Consensus 39 ~~l~~~~l~~~~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~g~i~-~-v~Q~~~l~~~tv 115 (290)
T 2bbs_A 39 DSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL-EPSEGKIKHSGRIS-F-CSQNSWIMPGTI 115 (290)
T ss_dssp -----------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS-CEEEEEEECCSCEE-E-ECSSCCCCSSBH
T ss_pred ceEEEEEEEEcCceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEECCEEE-E-EeCCCccCcccH
Confidence 3577788776542 3449999999999999999999999999999999 89999999998411 0 000000000011
Q ss_pred HHHHH-------HHHHH------HHHHHhCCc------chhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 157 VENIR-------RIGEV------AKLFADAGV------ICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 157 ~~~~~-------~v~~~------~~~~~~~~~------~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
.+.+. ...+. ...+..... ...+..+|+++++| .++++++.+|++ ++||||++.++..
T Consensus 116 ~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~l--llLDEPts~LD~~ 193 (290)
T 2bbs_A 116 KENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADL--YLLDSPFGYLDVL 193 (290)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHH
T ss_pred HHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCE--EEEECCcccCCHH
Confidence 11110 00001 011111110 01134689999999 999999999998 9999999999998
Q ss_pred ChhhHHHH
Q 023675 217 DPKGLYKL 224 (279)
Q Consensus 217 ~~~~l~~~ 224 (279)
....+++.
T Consensus 194 ~~~~i~~~ 201 (290)
T 2bbs_A 194 TEKEIFES 201 (290)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87777654
No 55
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.59 E-value=6.4e-16 Score=129.86 Aligned_cols=160 Identities=26% Similarity=0.329 Sum_probs=97.2
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHHHH
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFA 171 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~ 171 (279)
+..++|++++|+|+|||||||++++|++.+ |.++++++++... ......+.......++..+........
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 98 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARA 98 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHH
Confidence 455689999999999999999999999987 5789999987531 111223333333333333333333333
Q ss_pred hCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCC------CccccCcCCCCCC
Q 023675 172 DAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG------FTGIDDPYEPPLN 245 (279)
Q Consensus 172 ~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~------~~~~r~~~~~~~~ 245 (279)
..+...+++........++.++.+.. ++..|+|++|.+.+.+|+.++ .++... ....+.++|...
T Consensus 99 ~~g~~viid~~~~~~~~~~~l~~~~~--~~~vv~l~~~~e~l~~Rl~~R------~~~~~~~~~l~~~~~~~~~~~~~~- 169 (200)
T 4eun_A 99 DAGVSTIITCSALKRTYRDVLREGPP--SVDFLHLDGPAEVIKGRMSKR------EGHFMPASLLQSQLATLEALEPDE- 169 (200)
T ss_dssp HTTCCEEEEECCCCHHHHHHHTTSSS--CCEEEEEECCHHHHHHHHTTC------SCCSSCGGGHHHHHHHCCCCCTTS-
T ss_pred hcCCCEEEEchhhhHHHHHHHHHhCC--ceEEEEEeCCHHHHHHHHHhc------ccCCCCHHHHHHHHHHhCCCCCCC-
Confidence 33433444444444555665555443 345589999999999987432 111111 111123444332
Q ss_pred CceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675 246 CEIVLKQMGDDCPSPADMVETVVSYLDEN 274 (279)
Q Consensus 246 a~~~i~~~~~~~~~~~e~~~~Il~~l~~~ 274 (279)
++++||+ +. ++++++++|++.|...
T Consensus 170 ~~~~Id~---~~-~~~e~~~~I~~~l~~~ 194 (200)
T 4eun_A 170 SGIVLDL---RQ-PPEQLIERALTWLDIA 194 (200)
T ss_dssp CEEEEET---TS-CHHHHHHHHHHHHCCC
T ss_pred CeEEEEC---CC-CHHHHHHHHHHHHHhc
Confidence 6788887 54 9999999999988754
No 56
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.58 E-value=2.5e-15 Score=157.44 Aligned_cols=145 Identities=19% Similarity=0.202 Sum_probs=102.3
Q ss_pred CCCeEEeecceeecC--------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc----cc
Q 023675 79 STNILWHKNSVDKRD--------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG----LN 146 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~--------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~----~~ 146 (279)
.+.+++++++|+|+. +.||++++|++++|+|+||||||||+++|.|++ +|.+|.|.+||.+++.. ++
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~-~p~~G~I~i~g~~i~~~~~~~~r 1106 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFY-DPMAGSVFLDGKEIKQLNVQWLR 1106 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSS-CCSEEEEESSSSCTTSSCHHHHT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEEECCEEcccCCHHHHH
Confidence 467999999999964 239999999999999999999999999999999 89999999999988531 11
Q ss_pred cCCCCCccc-------HH--------------HHHHHHHHHH---HHHHh--CCc----chhcccCChHHHHH-HHHHHh
Q 023675 147 RDLSFKAED-------RV--------------ENIRRIGEVA---KLFAD--AGV----ICIACLISPYRKDR-DACRSM 195 (279)
Q Consensus 147 ~~~~~~~~~-------~~--------------~~~~~v~~~~---~~~~~--~~~----~~i~~~~~~~~~~r-~~ar~l 195 (279)
..+++.+++ .+ +.+....+.+ ..... .|+ ...+..+|+|++|| .++|++
T Consensus 1107 ~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal 1186 (1284)
T 3g5u_A 1107 AQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARAL 1186 (1284)
T ss_dssp TSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHH
T ss_pred hceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHH
Confidence 112211111 01 1111111111 11111 111 12344689999999 999999
Q ss_pred CCCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 196 LPEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 196 ~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+.+|++ ++||||+..++....+.+.+.++
T Consensus 1187 ~~~p~i--LiLDEpTs~lD~~~~~~i~~~l~ 1215 (1284)
T 3g5u_A 1187 VRQPHI--LLLDEATSALDTESEKVVQEALD 1215 (1284)
T ss_dssp HHCCSS--EEEESCSSSCCHHHHHHHHHHHH
T ss_pred HcCCCE--EEEeCCcccCCHHHHHHHHHHHH
Confidence 999998 99999999999887666555443
No 57
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.53 E-value=2.6e-14 Score=137.29 Aligned_cols=140 Identities=14% Similarity=0.072 Sum_probs=93.4
Q ss_pred CeEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCC-ccc
Q 023675 81 NILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFK-AED 155 (279)
Q Consensus 81 ~i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~-~~~ 155 (279)
.+++++++..|.+ ..++++++|++++|+|+||||||||+++|+|++ .|++|.|.+++..+.... ...... ...
T Consensus 269 ~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~~~~i~~~~-q~~~~~~~~t 346 (538)
T 3ozx_A 269 KMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEI-TADEGSVTPEKQILSYKP-QRIFPNYDGT 346 (538)
T ss_dssp EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSS-CCSBCCEESSCCCEEEEC-SSCCCCCSSB
T ss_pred eEEEcceEEEECCEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEECCeeeEeec-hhcccccCCC
Confidence 4667777666653 126678999999999999999999999999999 899999998886652110 000000 001
Q ss_pred HHHHHHHH---------HHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhH
Q 023675 156 RVENIRRI---------GEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (279)
Q Consensus 156 ~~~~~~~v---------~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l 221 (279)
..+.+... ......+...++. ..+..+|++++|| .+|++++.+|++ ++||||+..++......+
T Consensus 347 v~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~l--LlLDEPT~gLD~~~~~~i 424 (538)
T 3ozx_A 347 VQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADL--YVLDQPSSYLDVEERYIV 424 (538)
T ss_dssp HHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEeCCccCCCHHHHHHH
Confidence 11111110 0011111122222 2355689999999 999999999998 999999999999877665
Q ss_pred HHH
Q 023675 222 YKL 224 (279)
Q Consensus 222 ~~~ 224 (279)
++.
T Consensus 425 ~~~ 427 (538)
T 3ozx_A 425 AKA 427 (538)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 58
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.51 E-value=4.5e-14 Score=115.66 Aligned_cols=159 Identities=15% Similarity=0.099 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccC-------CCC----C---cccHHHHHHHHHHH
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD-------LSF----K---AEDRVENIRRIGEV 166 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~-------~~~----~---~~~~~~~~~~v~~~ 166 (279)
.|.+|+|+|+|||||||+++.|+..++. +.+.++.|.++..+... +.+ . ....+.....+.+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPE---PWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEG 78 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSS---CEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCC---CeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHH
Confidence 3678999999999999999999998842 35555666553222110 011 0 11122222232223
Q ss_pred HHHHHhCCcchhcccCCh-HHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCc-cccCcCCCCC
Q 023675 167 AKLFADAGVICIACLISP-YRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFT-GIDDPYEPPL 244 (279)
Q Consensus 167 ~~~~~~~~~~~i~~~~~~-~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~-~~r~~~~~~~ 244 (279)
...+...+..++++.... +...++.++..+....++.+++++|.+.+.+|+.++ ..+..... .....++.+.
T Consensus 79 ~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~r------~~~~~~~~~~~~~~~~~~~ 152 (178)
T 1qhx_A 79 VVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVAEGRETAR------GDRVAGMAAKQAYVVHEGV 152 (178)
T ss_dssp HHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHHHHT------SSSCTTHHHHHTTGGGTTC
T ss_pred HHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHHHHHHHhh------CCcccchhhhhchhhccCC
Confidence 333344454445444332 223344444455544566689999999999998532 11111110 0112233333
Q ss_pred CCceEEEccCCCCCCHHHHHHHHHHHH
Q 023675 245 NCEIVLKQMGDDCPSPADMVETVVSYL 271 (279)
Q Consensus 245 ~a~~~i~~~~~~~~~~~e~~~~Il~~l 271 (279)
.++++||| +..++++++++|+..+
T Consensus 153 ~~d~~idt---~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 153 EYDVEVDT---THKESIECAWAIAAHV 176 (178)
T ss_dssp CCSEEEET---TSSCHHHHHHHHHTTC
T ss_pred CCcEEEEC---CCCCHHHHHHHHHHHh
Confidence 47899999 8889999999998754
No 59
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.50 E-value=5.5e-14 Score=115.05 Aligned_cols=156 Identities=18% Similarity=0.263 Sum_probs=92.1
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc-----ccCCCCCcccHHHHHHHHHHHHHHHHhCC
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL-----NRDLSFKAEDRVENIRRIGEVAKLFADAG 174 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (279)
.+|++++|+|+|||||||+++.|++.+ |.+++|+|++.... .....+.......++..+......+...+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTN 80 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-----CcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcC
Confidence 468999999999999999999999987 46799999875320 11122222222233333333222222223
Q ss_pred cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC-------CCccccCcCCCCCCCc
Q 023675 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK-------GFTGIDDPYEPPLNCE 247 (279)
Q Consensus 175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~-------~~~~~r~~~~~~~~a~ 247 (279)
..++++........++.++... +++..|++++|.+.+.+|+.++ .+... .+.....++|.. .++
T Consensus 81 ~~~vi~~~~~~~~~~~~l~~~~--~~~~vv~l~~~~e~~~~R~~~R------~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 151 (175)
T 1knq_A 81 KVSLIVCSALKKHYRDLLREGN--PNLSFIYLKGDFDVIESRLKAR------KGHFFKTQMLVTQFETLQEPGADE-TDV 151 (175)
T ss_dssp SEEEEECCCCSHHHHHHHHTTC--TTEEEEEEECCHHHHHHHHHTS------TTCCCCHHHHHHHHHHCCCCCTTC-TTE
T ss_pred CcEEEEeCchHHHHHHHHHhcC--CCEEEEEEECCHHHHHHHHHhc------cCCCCchHHHHHHHHhhhCcccCC-CCe
Confidence 3334443333445555555432 2445699999999999987532 11100 000011222322 267
Q ss_pred eEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 248 IVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 248 ~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
++||+ + .++++++++|+..+..
T Consensus 152 ~~Id~---~-~~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 152 LVVDI---D-QPLEGVVASTIEVIKK 173 (175)
T ss_dssp EEEEC---S-SCHHHHHHHHHHHHHC
T ss_pred EEEeC---C-CCHHHHHHHHHHHHhc
Confidence 88987 5 6999999999988753
No 60
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.47 E-value=2e-14 Score=120.56 Aligned_cols=156 Identities=19% Similarity=0.207 Sum_probs=96.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-----cccCCCCCcccHHHHHHHHHHHHHHHHhCC
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-----LNRDLSFKAEDRVENIRRIGEVAKLFADAG 174 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (279)
+.+.+|+|+|+|||||||+++.|++.++ ..++++|++... ......+.......++..+. ..+ ..+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg-----~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~---~~~-~~~ 86 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACG-----YPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIG---ERL-ASR 86 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHT-----CCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHH---HHH-TSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-----CEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHH---HHH-hcC
Confidence 4467999999999999999999999884 448999887421 11222333333333333332 222 334
Q ss_pred cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCC------CccccCcCCCCCCCce
Q 023675 175 VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG------FTGIDDPYEPPLNCEI 248 (279)
Q Consensus 175 ~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~------~~~~r~~~~~~~~a~~ 248 (279)
..++++........++.+..+...+ +..|+|++|.+.+.+|+.++ .++... ......+++.. .+++
T Consensus 87 ~~vivd~~~~~~~~~~~l~~~~~~~-~~vi~l~~~~e~~~~Rl~~R------~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 158 (202)
T 3t61_A 87 EPVVVSCSALKRSYRDKLRESAPGG-LAFVFLHGSESVLAERMHHR------TGHFMPSSLLQTQLETLEDPRGE-VRTV 158 (202)
T ss_dssp SCCEEECCCCSHHHHHHHHHTSTTC-CEEEEEECCHHHHHHHHHHH------HSSCCCHHHHHHHHHHCCCCTTS-TTEE
T ss_pred CCEEEECCCCCHHHHHHHHHhcCCC-eEEEEEeCCHHHHHHHHHHh------hccCCCHHHHHHHHHhcCCCCCC-CCeE
Confidence 4445554444556666676665442 45599999999999998543 111111 01111222222 2668
Q ss_pred EEEccCCCCCCHHHHHHHHHHHHHhCCC
Q 023675 249 VLKQMGDDCPSPADMVETVVSYLDENGF 276 (279)
Q Consensus 249 ~i~~~~~~~~~~~e~~~~Il~~l~~~~~ 276 (279)
+|++ + .++++++++|++.|+..|+
T Consensus 159 ~Id~---~-~~~~e~~~~I~~~l~~~~~ 182 (202)
T 3t61_A 159 AVDV---A-QPLAEIVREALAGLARLAE 182 (202)
T ss_dssp EEES---S-SCHHHHHHHHHHHHHHHHH
T ss_pred EEeC---C-CCHHHHHHHHHHHHHHhhh
Confidence 8887 5 7999999999999987653
No 61
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.47 E-value=3.1e-15 Score=130.45 Aligned_cols=177 Identities=14% Similarity=0.132 Sum_probs=96.7
Q ss_pred CeEEeec-ceee-cC-----CcceeccC---CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCC
Q 023675 81 NILWHKN-SVDK-RD-----RQQLLQQK---GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLS 150 (279)
Q Consensus 81 ~i~~~~~-~~~~-~~-----~~sl~i~~---g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~ 150 (279)
.++++++ +++| .. +.+|.+.+ |++++|+|+|||||||++++|++.+..+ ++|.+.+.........
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~-----~~d~d~~~~~~~~g~~ 91 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT-----FFDCDTLIEQAMKGTS 91 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHHHSTTSC
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCc-----EEeCcHHHHHHhcCcc
Confidence 5788888 8888 33 23899999 9999999999999999999999988543 7888765322110000
Q ss_pred ----CCcccHHHHHHHHHH-HHHHHHh--CCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChh----
Q 023675 151 ----FKAEDRVENIRRIGE-VAKLFAD--AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPK---- 219 (279)
Q Consensus 151 ----~~~~~~~~~~~~v~~-~~~~~~~--~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~---- 219 (279)
+.......+.....+ +..+... ..++..+.+......++..+ .. . +.|||++|.+.+.+|+.+
T Consensus 92 i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~GgG~v~~~~~~~~l----~~-~-~vV~L~a~~e~l~~Rl~~~~~~ 165 (250)
T 3nwj_A 92 VAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTGGGAVIRPINWKYM----HK-G-ISIWLDVPLEALAHRIAAVGTG 165 (250)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECCGGGGGSHHHHHHH----TT-S-EEEEEECCHHHHHHHHHC----
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecCCCeecCHHHHHHH----hC-C-cEEEEECCHHHHHHHHhhcCCC
Confidence 111111111111111 2222222 22333333322233344333 22 3 349999999999999753
Q ss_pred --hHHHHHhC--------CCCCCCccccCcCCCCCCCceEE------------EccCCCCCCHHHHHHHHHHHHHh
Q 023675 220 --GLYKLARE--------GKVKGFTGIDDPYEPPLNCEIVL------------KQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 220 --~l~~~~~~--------~~~~~~~~~r~~~~~~~~a~~~i------------~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
.++..... ..+..++..|.++|+. ++++| || +..++++++++|++.++.
T Consensus 166 ~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~lY~~--ad~vi~~~~~~~~~~~iDT---s~~s~eev~~~I~~~i~~ 236 (250)
T 3nwj_A 166 SRPLLHDDESGDTYTAALNRLSTIWDARGEAYTK--ASARVSLENITLKLGYRSV---SDLTPAEIAIEAFEQVQS 236 (250)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHTT--SSEEEEHHHHHHHHTCSSG---GGCCHHHHHHHHHHHHHH
T ss_pred CCCcccCCCcccchhhHHHHHHHHHHHHHHHHhh--CCEEEEecccccccccccC---CCCCHHHHHHHHHHHHHH
Confidence 13221110 1234455668888876 77888 66 788999999999988875
No 62
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.46 E-value=2.4e-13 Score=132.29 Aligned_cols=140 Identities=16% Similarity=0.107 Sum_probs=91.8
Q ss_pred CeEEeecceeecCC----cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cccccCCCCCc
Q 023675 81 NILWHKNSVDKRDR----QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~~----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~~~~~~~~~~ 153 (279)
.+++++++++|.+. .+|++.+|++++|+|+||||||||+++|+|++ .|++|.|.++. .+. +.......++.
T Consensus 357 ~l~~~~l~~~~~~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~I~~~~-~i~~v~Q~~~~~~~~tv 434 (607)
T 3bk7_A 357 LVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKVEWDL-TVAYKPQYIKAEYEGTV 434 (607)
T ss_dssp EEEECCEEEECSSCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBSCCCCCC-CEEEECSSCCCCCSSBH
T ss_pred EEEEeceEEEecceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEEee-EEEEEecCccCCCCCcH
Confidence 47788888777542 25557999999999999999999999999999 89999987632 110 00000011111
Q ss_pred ccHHHHH--HH---HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 154 EDRVENI--RR---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 154 ~~~~~~~--~~---v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
.+..... .. -..+..++...++.. .+..+|+++++| .++++++.+|++ ++||||+..++......+++
T Consensus 435 ~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~l--LlLDEPt~~LD~~~~~~l~~ 512 (607)
T 3bk7_A 435 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAVSR 512 (607)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCccCCCHHHHHHHHH
Confidence 1111110 00 001112222223322 345689999999 999999999998 99999999999988776554
Q ss_pred H
Q 023675 224 L 224 (279)
Q Consensus 224 ~ 224 (279)
.
T Consensus 513 ~ 513 (607)
T 3bk7_A 513 A 513 (607)
T ss_dssp H
T ss_pred H
Confidence 3
No 63
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.45 E-value=3.1e-13 Score=129.92 Aligned_cols=140 Identities=17% Similarity=0.139 Sum_probs=91.2
Q ss_pred CeEEeecceeecC----CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cccccCCCCCc
Q 023675 81 NILWHKNSVDKRD----RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKA 153 (279)
Q Consensus 81 ~i~~~~~~~~~~~----~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~~~~~~~~~~ 153 (279)
.++++++++.|.+ ..+|++.+|++++|+|+||||||||+++|+|++ .|.+|.|.++. .+. +.......++.
T Consensus 287 ~l~~~~l~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~-~p~~G~i~~~~-~i~~v~Q~~~~~~~~tv 364 (538)
T 1yqt_A 287 LVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE-EPTEGKIEWDL-TVAYKPQYIKADYEGTV 364 (538)
T ss_dssp EEEECCEEEEETTEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSS-CCSBCCCCCCC-CEEEECSSCCCCCSSBH
T ss_pred EEEEeeEEEEECCEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEEECc-eEEEEecCCcCCCCCcH
Confidence 4677787777753 225667999999999999999999999999999 89999987632 110 00000011111
Q ss_pred ccHHHHH--HHH---HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 154 EDRVENI--RRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 154 ~~~~~~~--~~v---~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
.+..... ... ..+..++...++.. .+..+|+++++| .++++++.+|++ ++||||+..++......+++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~l--LlLDEPt~~LD~~~~~~i~~ 442 (538)
T 1yqt_A 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADI--YLLDEPSAYLDVEQRLAVSR 442 (538)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSE--EEEECTTTTCCHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEeCCcccCCHHHHHHHHH
Confidence 1111100 000 01112222233322 244689999999 899999999998 99999999999988776555
Q ss_pred H
Q 023675 224 L 224 (279)
Q Consensus 224 ~ 224 (279)
.
T Consensus 443 ~ 443 (538)
T 1yqt_A 443 A 443 (538)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.43 E-value=3.6e-14 Score=116.43 Aligned_cols=114 Identities=19% Similarity=0.229 Sum_probs=66.4
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCC
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG 174 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (279)
.||++++|++++|+|+||||||||++++.+-. ..+.++.++..+....+ ...-....+..+..........+
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~-------~~~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g 73 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPT-------EVISSDFCRGLMSDDEN-DQTVTGAAFDVLHYIVSKRLQLG 73 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCGG-------GEEEHHHHHHHHCSSTT-CGGGHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccCC-------eEEccHHHHHHhcCccc-chhhHHHHHHHHHHHHHHHHhCC
Confidence 47899999999999999999999999633211 12333333211111100 00001111111222222222333
Q ss_pred cchhcc---cCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 175 VICIAC---LISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 175 ~~~i~~---~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
...... ..++++++| .++++++.+|++ ++||||++.|+.+..
T Consensus 74 ~~~~~~~~~~~s~g~~qrv~iAral~~~p~~--lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 74 KLTVVDATNVQESARKPLIEMAKDYHCFPVA--VVFNLPEKVCQERNK 119 (171)
T ss_dssp CCEEEESCCCSHHHHHHHHHHHHHTTCEEEE--EEECCCHHHHHHHHH
T ss_pred CeEEEECCCCCHHHHHHHHHHHHHcCCcEEE--EEEeCCHHHHHHHHh
Confidence 333222 245666777 899999998877 999999999998843
No 65
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.41 E-value=2.7e-13 Score=130.34 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=81.7
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE---------EEcCeecccc------cccCCCCC-------c
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG------LNRDLSFK-------A 153 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i---------~ldgd~i~~~------~~~~~~~~-------~ 153 (279)
| .+++|++++|+|+||||||||+++|+|.+ .|++|.+ .++|.++... ....+++. +
T Consensus 42 s-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~-~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~ 119 (538)
T 1yqt_A 42 P-VVKEGMVVGIVGPNGTGKSTAVKILAGQL-IPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIP 119 (538)
T ss_dssp C-CCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSG
T ss_pred C-cCCCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcc
Confidence 5 78999999999999999999999999999 8888885 3455443210 00000000 0
Q ss_pred ----ccHHHHHHHH---HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhH
Q 023675 154 ----EDRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (279)
Q Consensus 154 ----~~~~~~~~~v---~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l 221 (279)
....+.+... ..+..++...++.. .+..+|+++++| .++++++.+|++ ++||||++.|+......+
T Consensus 120 ~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~l--LlLDEPTs~LD~~~~~~l 197 (538)
T 1yqt_A 120 KAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATF--YFFDEPSSYLDIRQRLNA 197 (538)
T ss_dssp GGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHH
T ss_pred hhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCE--EEEECCcccCCHHHHHHH
Confidence 0111111100 01222333334322 345689999999 999999999998 999999999999876664
Q ss_pred HH
Q 023675 222 YK 223 (279)
Q Consensus 222 ~~ 223 (279)
++
T Consensus 198 ~~ 199 (538)
T 1yqt_A 198 AR 199 (538)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 66
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.40 E-value=5e-13 Score=135.31 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=51.9
Q ss_pred CeEEeecceeecC-------CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675 81 NILWHKNSVDKRD-------RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (279)
Q Consensus 81 ~i~~~~~~~~~~~-------~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg 138 (279)
.++++|++++|.. +.||++.+|++++|+|+||||||||+++|+|++ .|++|.|++++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll-~P~sG~I~~~~ 734 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL-LPTSGEVYTHE 734 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS-CCSEEEEEECT
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEEcC
Confidence 4899999999964 238999999999999999999999999999999 89999999976
No 67
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.40 E-value=3.9e-13 Score=130.72 Aligned_cols=137 Identities=16% Similarity=0.127 Sum_probs=85.8
Q ss_pred cceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE-----------EEcCeecccc----cc
Q 023675 87 NSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRHG----LN 146 (279)
Q Consensus 87 ~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i-----------~ldgd~i~~~----~~ 146 (279)
+.++|..+. ...+.+|++++|+||||||||||+++|+|++ .|++|.| ++.|.++... ..
T Consensus 83 ~~~~Y~~~~~~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll-~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~ 161 (608)
T 3j16_B 83 VTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQ-KPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161 (608)
T ss_dssp EEEECSTTSCEEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS-CCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHH
T ss_pred eEEEECCCceeecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCC-CCCCceEecccchhhhhheecChhhhhhhhHHHH
Confidence 455665432 2256899999999999999999999999999 8999987 3334332110 00
Q ss_pred cCC------CCCcc----------cHHHHHHH-----HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCC
Q 023675 147 RDL------SFKAE----------DRVENIRR-----IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGD 200 (279)
Q Consensus 147 ~~~------~~~~~----------~~~~~~~~-----v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~ 200 (279)
..+ .+... .....+.. ...+..++...++.. .+..+|+++++| +++++++.+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~ 241 (608)
T 3j16_B 162 DDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEAD 241 (608)
T ss_dssp TSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCS
T ss_pred HhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCC
Confidence 000 00000 00000000 011122222223322 345689999999 99999999999
Q ss_pred ccEEEEeCCccchhccChhhHHHHHh
Q 023675 201 FIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 201 ~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+ ++||||++.|+......+++.++
T Consensus 242 l--lllDEPts~LD~~~~~~l~~~l~ 265 (608)
T 3j16_B 242 V--YMFDEPSSYLDVKQRLNAAQIIR 265 (608)
T ss_dssp E--EEEECTTTTCCHHHHHHHHHHHH
T ss_pred E--EEEECcccCCCHHHHHHHHHHHH
Confidence 8 99999999999987776665444
No 68
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.40 E-value=2.2e-13 Score=132.60 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=88.1
Q ss_pred eecceeecCC------cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE---------EEcCeecccc-----
Q 023675 85 HKNSVDKRDR------QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY---------ILDGDNCRHG----- 144 (279)
Q Consensus 85 ~~~~~~~~~~------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i---------~ldgd~i~~~----- 144 (279)
++++++|..+ .+ .+++|++++|+|+||||||||+++|+|++ .|++|.+ .++|.++...
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll-~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~ 172 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL-IPNLCEDNDSWDNVIRAFRGNELQNYFERLK 172 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS-CCCTTTTCCCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC-CCCCCccccccchhhheeCCEehhhhhhhhh
Confidence 6667777543 24 68999999999999999999999999999 8888885 3455443210
Q ss_pred -cccCCCCC-------c----ccHHHHHHH---HHHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEE
Q 023675 145 -LNRDLSFK-------A----EDRVENIRR---IGEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEV 204 (279)
Q Consensus 145 -~~~~~~~~-------~----~~~~~~~~~---v~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i 204 (279)
....+++. + ....+.+.. ...+..++...++.. ....+|+++++| .++++++.+|++ +
T Consensus 173 ~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~l--L 250 (607)
T 3bk7_A 173 NGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHF--Y 250 (607)
T ss_dssp HTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSE--E
T ss_pred hhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCE--E
Confidence 00001000 0 011111110 001122233333322 344689999999 999999999998 9
Q ss_pred EEeCCccchhccChhhHHH
Q 023675 205 FMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~ 223 (279)
+||||++.|+......+++
T Consensus 251 lLDEPTs~LD~~~~~~l~~ 269 (607)
T 3bk7_A 251 FFDEPSSYLDIRQRLKVAR 269 (607)
T ss_dssp EEECTTTTCCHHHHHHHHH
T ss_pred EEECCcccCCHHHHHHHHH
Confidence 9999999999987766444
No 69
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.39 E-value=2.1e-14 Score=120.47 Aligned_cols=163 Identities=15% Similarity=0.124 Sum_probs=88.0
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHH
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEV 166 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~ 166 (279)
++.||.+++|++++|+|+|||||||+++.|++.+..+ ++|.|++..... +....+. ...++.+ .++
T Consensus 16 ~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~---g~~i~~~~~~~~~~~~~~~e~~~ 87 (199)
T 3vaa_A 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERF---HKTVGELFTERGEAGFRELERNM 87 (199)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHh---CCcHHHHHHhcChHHHHHHHHHH
Confidence 4558889999999999999999999999999998544 788877532110 1111110 1111111 111
Q ss_pred HHHHHhCCcchhccc---CChHHHHHHHHHHhCCCCCccEEEEeCCccchhccCh-hh----HHHHHh----CCCCCCCc
Q 023675 167 AKLFADAGVICIACL---ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP-KG----LYKLAR----EGKVKGFT 234 (279)
Q Consensus 167 ~~~~~~~~~~~i~~~---~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~-~~----l~~~~~----~~~~~~~~ 234 (279)
...+..... .++.. .......++.+.. + ...|||++|.+.+.+|+. .+ +..... ...+..+.
T Consensus 88 l~~l~~~~~-~vi~~ggg~~~~~~~~~~l~~----~-~~vi~L~~~~e~l~~Rl~~~~~~Rp~~~~~~~~~~~~~i~~~~ 161 (199)
T 3vaa_A 88 LHEVAEFEN-VVISTGGGAPCFYDNMEFMNR----T-GKTVFLNVHPDVLFRRLRIAKQQRPILQGKEDDELMDFIIQAL 161 (199)
T ss_dssp HHHHTTCSS-EEEECCTTGGGSTTHHHHHHH----H-SEEEEEECCHHHHHHHHHHTGGGCGGGTTCCHHHHHHHHHHHH
T ss_pred HHHHhhcCC-cEEECCCcEEccHHHHHHHHc----C-CEEEEEECCHHHHHHHHhcCCCCCCCcCCCChhhHHHHHHHHH
Confidence 221212111 12221 1111222332322 1 244999999999999986 21 100000 00122233
Q ss_pred cccCcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675 235 GIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDEN 274 (279)
Q Consensus 235 ~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~ 274 (279)
..+.++|.. ++++|++ +..++++++++|++.+++.
T Consensus 162 ~~r~~~y~~--ad~~Idt---~~~s~ee~~~~I~~~l~~~ 196 (199)
T 3vaa_A 162 EKRAPFYTQ--AQYIFNA---DELEDRWQIESSVQRLQEL 196 (199)
T ss_dssp HHHHHHHTT--SSEEEEC---CCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhh--CCEEEEC---CCCCHHHHHHHHHHHHHHH
Confidence 446667765 7899999 7789999999999988764
No 70
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.36 E-value=1.4e-12 Score=128.45 Aligned_cols=140 Identities=19% Similarity=0.198 Sum_probs=80.6
Q ss_pred eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHH---------------------HHHHHccccCC-------ccE
Q 023675 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA---------------------CALSQALHWRG-------KLT 133 (279)
Q Consensus 82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~---------------------~~L~~~l~~~~-------~G~ 133 (279)
+.+.+......++.||++++|++++|+||||||||||+ +.+.+++ .|+ .+.
T Consensus 24 ~~~~~~~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~-~~~~~~i~~~~~~ 102 (670)
T 3ux8_A 24 IIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQME-KPDVDAIEGLSPA 102 (670)
T ss_dssp EEEEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC---------------CCCSEEESCCCE
T ss_pred EEEcCCCccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccc-cCCccceeccccc
Confidence 44555444456778999999999999999999999998 7777776 666 455
Q ss_pred EEEcCeecccccccCCC------------------------------CCcccHHHHH-----------------HHHHHH
Q 023675 134 YILDGDNCRHGLNRDLS------------------------------FKAEDRVENI-----------------RRIGEV 166 (279)
Q Consensus 134 i~ldgd~i~~~~~~~~~------------------------------~~~~~~~~~~-----------------~~v~~~ 166 (279)
+.+++.+........++ ++..+..... ..+.+.
T Consensus 103 i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (670)
T 3ux8_A 103 ISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR 182 (670)
T ss_dssp EEESSCC-----CCBHHHHTTCC-------------------------CC--------------------------CHHH
T ss_pred eEecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Confidence 66666543211000000 0000000000 000001
Q ss_pred HHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCC--ccEEEEeCCccchhccChhhHHHH
Q 023675 167 AKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGD--FIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 167 ~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~--~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
..++...++. .....+|+++++| .+||+++.+|+ + ++||||++.|+......+++.
T Consensus 183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~l--LlLDEPtsgLD~~~~~~l~~~ 246 (670)
T 3ux8_A 183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVL--YVLDEPSIGLHQRDNDRLIAT 246 (670)
T ss_dssp HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCE--EEEECTTTTCCGGGHHHHHHH
T ss_pred HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCE--EEEECCccCCCHHHHHHHHHH
Confidence 1112233321 2355689999999 99999999887 7 999999999999988775543
No 71
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=99.34 E-value=3.6e-13 Score=128.19 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=102.8
Q ss_pred CccccccCccccccccccccchhhhhhhhcccccccccccccccCCCCe--EEeecceeecCCcce--eccCCeEEEEEc
Q 023675 34 GFFNVSRLRSLQPIKALEESATASVVQESAAISGNNLCQNSTVAKSTNI--LWHKNSVDKRDRQQL--LQQKGCVIWITG 109 (279)
Q Consensus 34 ~~~~~~~~g~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~sl--~i~~g~~i~lvG 109 (279)
.|.-++.+|+|.++|+.++.. .+...++|+.+...+..+ .++ .|..-.+...-+..+ ..++|.+|+|+|
T Consensus 330 ~~~y~~~~g~~i~~d~~p~~~-----~~~~~iSgt~IR~~Lr~G--~~~P~~f~rpeV~~vLr~~~~~~~~~~~~I~l~G 402 (511)
T 1g8f_A 330 MVTYLPDEDRYAPIDQIDTTK-----TRTLNISGTELRRRLRVG--GEIPEWFSYPEVVKILRESNPPRPKQGFSIVLGN 402 (511)
T ss_dssp CEEEEGGGTEEEEGGGCSSSC-----CCCBCCCHHHHHHHHHHT--CCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEECT
T ss_pred ceeEecccCeEEEcccCCCCc-----ccccccCHHHHHHHHhCC--CCCCccccChhhHHHHHHhcccccccceEEEecc
Confidence 666669999999999999731 011112333221111101 111 111111111111122 357889999999
Q ss_pred CCCChHHHHHHHHHHcccc-C-CccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHH
Q 023675 110 LSGSGKSTLACALSQALHW-R-GKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIACLISPYRK 187 (279)
Q Consensus 110 ~sGsGKSTl~~~L~~~l~~-~-~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~ 187 (279)
+|||||||++++|++.|.. . +....++|||+ . . . +..++..+...|..++....++ +
T Consensus 403 lsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~-~-----------~---e----i~~va~~~~~~G~~Vv~~~~sp-~- 461 (511)
T 1g8f_A 403 SLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN-K-----------T---E----LLSLIQDFIGSGSGLIIPDQWE-D- 461 (511)
T ss_dssp TCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT-C-----------H---H----HHTTHHHHHHTTCEEEESSCCC-G-
T ss_pred cCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC-c-----------H---H----HHHHHHHHHhcCCeEEEecCCH-H-
Confidence 9999999999999999954 2 24456889886 1 0 0 2223334445565555555444 1
Q ss_pred HHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHH
Q 023675 188 DRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETV 267 (279)
Q Consensus 188 ~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~I 267 (279)
..|.++....|++++ .|..++++||+ +..++++++++|
T Consensus 462 ---~~R~~l~~g~fv~v~------------------------------------~p~~adI~IDT---s~~s~eevV~~I 499 (511)
T 1g8f_A 462 ---DKDSVVGKQNVYLLD------------------------------------TSSSADIQLES---ADEPISHIVQKV 499 (511)
T ss_dssp ---GGGGGSCCTTEEEEE------------------------------------SSTTCSEECSS---TTCCHHHHHHHH
T ss_pred ---HHHHHhcCCCEEEEe------------------------------------cCCCCcEEEEC---CCCCHHHHHHHH
Confidence 233344333453322 23346799988 789999999999
Q ss_pred HHHHHhCCCcc
Q 023675 268 VSYLDENGFLR 278 (279)
Q Consensus 268 l~~l~~~~~~~ 278 (279)
+++|+++|+++
T Consensus 500 l~~L~~~g~~~ 510 (511)
T 1g8f_A 500 VLFLEDNGFFV 510 (511)
T ss_dssp HHHHHHTTSCC
T ss_pred HHHHHhcCCCC
Confidence 99999998874
No 72
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.34 E-value=7.7e-13 Score=127.11 Aligned_cols=125 Identities=18% Similarity=0.179 Sum_probs=82.0
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEE-----------EEcCeecccc--------c--ccCCCCCcc--
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-----------ILDGDNCRHG--------L--NRDLSFKAE-- 154 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i-----------~ldgd~i~~~--------~--~~~~~~~~~-- 154 (279)
..++|++++|+||||||||||+++|+|++ .|+.|.+ .++|.++... . .....+...
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~-~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEI-IPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSS-CCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 34689999999999999999999999999 8999988 5666654210 0 000111100
Q ss_pred -----cHHHHHHHH---HHHHHHHHhCCcch----hcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhH
Q 023675 155 -----DRVENIRRI---GEVAKLFADAGVIC----IACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGL 221 (279)
Q Consensus 155 -----~~~~~~~~v---~~~~~~~~~~~~~~----i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l 221 (279)
.....+... .....++...++.. .+..+|+++++| .+|++++.+|++ ++||||++.|+......+
T Consensus 100 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~i--lllDEPts~LD~~~~~~l 177 (538)
T 3ozx_A 100 KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADV--YIFDQPSSYLDVRERMNM 177 (538)
T ss_dssp TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSE--EEEESTTTTCCHHHHHHH
T ss_pred hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCE--EEEECCcccCCHHHHHHH
Confidence 111111100 00112222233322 345689999999 999999999998 999999999999877765
Q ss_pred HHHH
Q 023675 222 YKLA 225 (279)
Q Consensus 222 ~~~~ 225 (279)
++.+
T Consensus 178 ~~~l 181 (538)
T 3ozx_A 178 AKAI 181 (538)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 73
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.29 E-value=1.5e-11 Score=119.52 Aligned_cols=124 Identities=16% Similarity=0.069 Sum_probs=77.1
Q ss_pred CcceeccCC-----eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCC--CCCcccHHHHHHH----
Q 023675 94 RQQLLQQKG-----CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDL--SFKAEDRVENIRR---- 162 (279)
Q Consensus 94 ~~sl~i~~g-----~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~--~~~~~~~~~~~~~---- 162 (279)
+.+|++.+| ++++|+|+||||||||+++|+|++ .|++|... ....+. ...... .+.. ...+.+..
T Consensus 365 ~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~-~p~~G~~~-~~~~i~-~~~q~~~~~~~~-tv~e~~~~~~~~ 440 (608)
T 3j16_B 365 DFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL-KPDEGQDI-PKLNVS-MKPQKIAPKFPG-TVRQLFFKKIRG 440 (608)
T ss_dssp SCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS-CCSBCCCC-CSCCEE-EECSSCCCCCCS-BHHHHHHHHCSS
T ss_pred ceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC-CCCCCcCc-cCCcEE-EecccccccCCc-cHHHHHHHHhhc
Confidence 457888877 789999999999999999999999 88888621 111110 000000 0100 00010000
Q ss_pred ----HHHHHHHHHhCCcc----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHH
Q 023675 163 ----IGEVAKLFADAGVI----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 163 ----v~~~~~~~~~~~~~----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
.......+...++. ..+..+|++++|| .+|++++.+|++ ++||||+..++......+++
T Consensus 441 ~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~l--LlLDEPT~gLD~~~~~~i~~ 508 (608)
T 3j16_B 441 QFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADI--YLIDEPSAYLDSEQRIICSK 508 (608)
T ss_dssp TTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSE--EEECCTTTTCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCE--EEEECCCCCCCHHHHHHHHH
Confidence 00011111122221 2345689999999 999999999998 99999999999887665443
No 74
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.26 E-value=1.4e-11 Score=121.38 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=36.1
Q ss_pred hcccCChHHHHH-HHHHHhCCCC---CccEEEEeCCccchhccChhhHHH
Q 023675 178 IACLISPYRKDR-DACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYK 223 (279)
Q Consensus 178 i~~~~~~~~~~r-~~ar~l~~~~---~~i~i~ld~p~~~l~~R~~~~l~~ 223 (279)
.+..+|+++++| .+||+++.+| ++ ++||||+..++......+++
T Consensus 540 ~~~~LSgG~~qrv~iAraL~~~p~~p~l--lllDEPt~~LD~~~~~~i~~ 587 (670)
T 3ux8_A 540 PATTLSGGEAQRVKLAAELHRRSNGRTL--YILDEPTTGLHVDDIARLLD 587 (670)
T ss_dssp CGGGCCHHHHHHHHHHHHHHSCCCSCEE--EEEESTTTTCCHHHHHHHHH
T ss_pred CchhCCHHHHHHHHHHHHHhhCCCCCcE--EEEeCCCCCCCHHHHHHHHH
Confidence 355689999999 9999998876 36 99999999999887766544
No 75
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.22 E-value=5.6e-12 Score=104.22 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=86.9
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc--cCCCCCcccHHHH---HHHHHHHHHHHHh
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN--RDLSFKAEDRVEN---IRRIGEVAKLFAD 172 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~--~~~~~~~~~~~~~---~~~v~~~~~~~~~ 172 (279)
.+++|++++|+|+|||||||++++|++. ++.|.|+++++++..... ...++.++..... ...+...+..+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~---~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~ 81 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL---PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAK 81 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC---SSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc---cCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999999997 457899999998743221 1124444322211 1112111222222
Q ss_pred CCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCC-------CCccccCcCCCCCC
Q 023675 173 AGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVK-------GFTGIDDPYEPPLN 245 (279)
Q Consensus 173 ~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~-------~~~~~r~~~~~~~~ 245 (279)
.+...+...... ...++..+.+ ...+..+++.++...+..|...+ ..++. .+......++..
T Consensus 82 ~~~~~~~~~~~~-~~~l~~~~~~--~~~~~~ls~~~~~~v~~~R~~~r------~~~~lld~~~~~~~~~~~~~l~~~-- 150 (191)
T 1zp6_A 82 EGYFVILDGVVR-PDWLPAFTAL--ARPLHYIVLRTTAAEAIERCLDR------GGDSLSDPLVVADLHSQFADLGAF-- 150 (191)
T ss_dssp TSCEEEECSCCC-TTTTHHHHTT--CSCEEEEEEECCHHHHHHHHHTT------CTTSCCCHHHHHHHHHHTTCCGGG--
T ss_pred cCCeEEEeccCc-HHHHHHHHhc--CCCeEEEEecCCHHHHHHHHHhc------CCCccCCHHHHHHHHHHHhccCcc--
Confidence 232222221110 0111111111 11233478888877776665321 11100 011112333332
Q ss_pred CceEEEccCCCCCCHHHHHHHHHHHHHhCC
Q 023675 246 CEIVLKQMGDDCPSPADMVETVVSYLDENG 275 (279)
Q Consensus 246 a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~ 275 (279)
++++|++ +..++++++++|++.+....
T Consensus 151 ~~~~i~t---~~~~~~~~~~~i~~~l~~~~ 177 (191)
T 1zp6_A 151 EHHVLPV---SGKDTDQALQSAINALQSGR 177 (191)
T ss_dssp GGGEEEC---TTCCTTTTTTTTHHHHHHTT
T ss_pred cccEEEC---CCCCHHHHHHHHHHHHHhhh
Confidence 4578888 66788999999999887653
No 76
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.22 E-value=7.6e-11 Score=102.91 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=90.2
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHH-HHHHHHhCCcchh
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGE-VAKLFADAGVICI 178 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~~~i 178 (279)
.++.+|+|+|++||||||+++.|+..+...+...+++++|.++..+.. |.............. +...+.. ..++
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~---~~~~~e~~~~~~~~~~i~~~l~~--~~vI 76 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV---WKEKYEEFIKKSTYRLIDSALKN--YWVI 76 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS---CCGGGHHHHHHHHHHHHHHHHTT--SEEE
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh---hhHHHHHHHHHHHHHHHHHHhhC--CEEE
Confidence 357799999999999999999999986434334455699888654432 333221111111111 1222222 3344
Q ss_pred cccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhhH-------HHHHhCCCCCCCccccCcCCCCCCCceE
Q 023675 179 ACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGL-------YKLAREGKVKGFTGIDDPYEPPLNCEIV 249 (279)
Q Consensus 179 ~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~l-------~~~~~~~~~~~~~~~r~~~~~~~~a~~~ 249 (279)
++........+..+..++. ......|++++|.+.+.+|..++- +.... ..+....+.|.+..++++
T Consensus 77 iD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~~~~l~~~~-----~~~e~~~~~~~~~~~~~~ 151 (260)
T 3a4m_A 77 VDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGEKIPNEVIKKMY-----EKFDEPGKKYKWDEPFLI 151 (260)
T ss_dssp ECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTCSSCHHHHHHHH-----HHCCCTTSSCGGGCCSEE
T ss_pred EeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCCCCCHHHHHHHH-----HHhcCccccCCCCCCEEE
Confidence 4443333344444443322 113456899999999999875420 10000 000111112221236789
Q ss_pred EEccCCCC-CCHHHHHHHHHHHHHhC
Q 023675 250 LKQMGDDC-PSPADMVETVVSYLDEN 274 (279)
Q Consensus 250 i~~~~~~~-~~~~e~~~~Il~~l~~~ 274 (279)
||+ +. .+++++++.|+..+...
T Consensus 152 Id~---~~~~~~~ei~~~I~~~l~~~ 174 (260)
T 3a4m_A 152 IDT---TKDIDFNEIAKKLIEKSKEI 174 (260)
T ss_dssp EET---TSCCCHHHHHHHHHHHHTSC
T ss_pred EeC---CCCCCHHHHHHHHHhcccCC
Confidence 988 55 58999999999887653
No 77
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.21 E-value=2.1e-11 Score=100.80 Aligned_cols=154 Identities=14% Similarity=0.045 Sum_probs=82.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHHHHHHHHHHhCCcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRIGEVAKLFADAGVI 176 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~~~ 176 (279)
|++++|+|+|||||||+++.|++. ..|.++++++++..... .++.++.. ...++.+...+..+...+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~----~~g~~~i~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 75 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ----LDNSAYIEGDIINHMVV--GGYRPPWESDELLALTWKNITDLTVNFLLAQND 75 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH----SSSEEEEEHHHHHTTCC--TTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc----cCCeEEEcccchhhhhc--cccccCccchhHHHHHHHHHHHHHHHHHhcCCc
Confidence 689999999999999999999873 35789999998754322 12222211 11222222233333333433
Q ss_pred hhcccCChHHHHHHHHHHhC----CCCCccEEEEeCCccchhccChhhHHHH-HhCCCCCCCccccCcCCCCCCCceEEE
Q 023675 177 CIACLISPYRKDRDACRSML----PEGDFIEVFMDVPLQVCEARDPKGLYKL-AREGKVKGFTGIDDPYEPPLNCEIVLK 251 (279)
Q Consensus 177 ~i~~~~~~~~~~r~~ar~l~----~~~~~i~i~ld~p~~~l~~R~~~~l~~~-~~~~~~~~~~~~r~~~~~~~~a~~~i~ 251 (279)
.+...... ...++..+.++ ....+..+++++|.+.+.+|...+.... ........ ......++.. +..+|+
T Consensus 76 ~ild~~~~-~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~~~~~~~~--~~~ii~ 151 (189)
T 2bdt_A 76 VVLDYIAF-PDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEEFESKGID--ERYFYN 151 (189)
T ss_dssp EEEESCCC-HHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHHHHHTTCC--TTSEEE
T ss_pred EEEeeccC-HHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHHHhhcCCC--ccEEEe
Confidence 33333221 22223233332 1113444789999999999886442210 00000001 1112222322 457888
Q ss_pred ccCCCCC---CHHHHHHHHH
Q 023675 252 QMGDDCP---SPADMVETVV 268 (279)
Q Consensus 252 ~~~~~~~---~~~e~~~~Il 268 (279)
+ ++. ++++++++|+
T Consensus 152 t---sh~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 152 T---SHLQPTNLNDIVKNLK 168 (189)
T ss_dssp C---SSSCGGGHHHHHHHHH
T ss_pred C---CCCChhhHHHHHHHHh
Confidence 7 666 7889999988
No 78
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.21 E-value=9.7e-11 Score=118.69 Aligned_cols=139 Identities=17% Similarity=0.198 Sum_probs=87.2
Q ss_pred CCeEEeecceeecCC-----cceeccCCeEEEEEcCCCChHHHHHHHHHHc-cc-cC--C-ccEEEEcCeecccccccCC
Q 023675 80 TNILWHKNSVDKRDR-----QQLLQQKGCVIWITGLSGSGKSTLACALSQA-LH-WR--G-KLTYILDGDNCRHGLNRDL 149 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~-----~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~-l~-~~--~-~G~i~ldgd~i~~~~~~~~ 149 (279)
..+...+++++|..+ .||++.+|++++|+|+||||||||+++|++- +. .+ . .+.+++..+ .. .
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~-~~-~----- 506 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHD-ID-G----- 506 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCC-CC-C-----
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEccc-cc-c-----
Confidence 346666778888643 4999999999999999999999999999952 10 00 0 011122111 00 0
Q ss_pred CCCcccHHHHHHH-----HHHHHHHHHhCCcc-----hhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 150 SFKAEDRVENIRR-----IGEVAKLFADAGVI-----CIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 150 ~~~~~~~~~~~~~-----v~~~~~~~~~~~~~-----~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
.+......+++.. ...+...+...++. .....+|+|+++| .++++++.+|++ ++||||++.|+....
T Consensus 507 ~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~l--LLLDEPTs~LD~~~~ 584 (986)
T 2iw3_A 507 THSDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI--LLLDEPTNHLDTVNV 584 (986)
T ss_dssp CCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSE--EEEESTTTTCCHHHH
T ss_pred cccCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCE--EEEECCccCCCHHHH
Confidence 0000000111100 01122233344441 1345689999999 999999999998 999999999999888
Q ss_pred hhHHHHHhC
Q 023675 219 KGLYKLARE 227 (279)
Q Consensus 219 ~~l~~~~~~ 227 (279)
+.+.+.++.
T Consensus 585 ~~l~~~L~~ 593 (986)
T 2iw3_A 585 AWLVNYLNT 593 (986)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766554
No 79
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.17 E-value=3.1e-12 Score=108.92 Aligned_cols=45 Identities=22% Similarity=0.188 Sum_probs=32.2
Q ss_pred cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++.||++++|++++|+||||||||||+++|++++ | |.|.+ |.++
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~--p--G~i~~-g~~~ 57 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF--P--NYFYF-SVSC 57 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS--T--TTEEE-CCCE
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC--C--CcEEE-eecc
Confidence 35678999999999999999999999999999987 3 78888 6544
No 80
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.16 E-value=9.5e-11 Score=101.86 Aligned_cols=35 Identities=31% Similarity=0.242 Sum_probs=29.9
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHH---HccccCCccEEE
Q 023675 100 QKGCVIWITGLSGSGKSTLACALS---QALHWRGKLTYI 135 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~---~~l~~~~~G~i~ 135 (279)
++|++|+|+|+|||||||++++|+ ++. .++.|.++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~-~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWR-LLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCE-EEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCC-cCCCCcee
Confidence 679999999999999999999999 555 55666666
No 81
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.14 E-value=1.4e-10 Score=95.68 Aligned_cols=164 Identities=18% Similarity=0.158 Sum_probs=83.7
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHH-----HHHHHHHHHHHhCC
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENI-----RRIGEVAKLFADAG 174 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~ 174 (279)
++|.+|+|+|++||||||+++.|+..+..+ +++.|.++..+...+..........+ ..+..........|
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g 77 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSG 77 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCC
Confidence 467899999999999999999999987433 78888776433222222211111111 11111122122234
Q ss_pred cchhcccCChHHHH-HHH--HHHhCCCCCccEEEEeCCccchhccChhhHHHHHh-----CCCCC------CCccccCcC
Q 023675 175 VICIACLISPYRKD-RDA--CRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAR-----EGKVK------GFTGIDDPY 240 (279)
Q Consensus 175 ~~~i~~~~~~~~~~-r~~--ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~-----~~~~~------~~~~~r~~~ 240 (279)
..++.+........ +.+ +...... ..+.|+|++|.+.+.+|+.++-....+ ...+. .....+.++
T Consensus 78 ~~vi~d~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (193)
T 2rhm_A 78 QSLIMESNFRVDLDTERMQNLHTIAPF-TPIQIRCVASGDVLVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPL 156 (193)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHSCC-EEEEEEEECCHHHHHHHHHHHHHTTCC--------CHHHHHHHHHSCCCCCC
T ss_pred CeEEEecCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHHHHHhcCccccCcccccCccCcchhhHHHHhcCCCc
Confidence 44444433222212 122 2221112 334589999999999998644210000 00110 011112333
Q ss_pred CCCCCCceEEEccCCCCC---CHHHHHHHHHHHHHh
Q 023675 241 EPPLNCEIVLKQMGDDCP---SPADMVETVVSYLDE 273 (279)
Q Consensus 241 ~~~~~a~~~i~~~~~~~~---~~~e~~~~Il~~l~~ 273 (279)
+.. .++++||+ +.. ..+++++.|...+..
T Consensus 157 ~~~-~~~~~Idt---~~~~~~~~~~i~~~i~~~l~~ 188 (193)
T 2rhm_A 157 PLG-GPLLTVDT---TFPEQIDMNAIVQWVRQHLQS 188 (193)
T ss_dssp CCC-SCEEEEEC---SSGGGCCHHHHHHHHHHHHHH
T ss_pred cCC-CCEEEEeC---CCCcccCHHHHHHHHHHHHHh
Confidence 321 36788888 443 456777777666654
No 82
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.13 E-value=1.7e-12 Score=106.98 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=85.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHHH-HHHHhC
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVA-KLFADA 173 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~~-~~~~~~ 173 (279)
.+..|+|+|++||||||+++.|+..++.+ ++|.|++..... +....+. ...++.+ .++. .+....
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 75 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRT---GADIAWIFEMEGEAGFRRREREMIEALCKLD 75 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHH---TSCHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHc---CCChhhHHHHhCHHHHHHHHHHHHHHHHhcC
Confidence 36789999999999999999999988544 888887643221 1111111 0111111 1111 122222
Q ss_pred C-cchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccC--hhh----HHH-HHhCCCCCCCccccCcCCCCCC
Q 023675 174 G-VICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARD--PKG----LYK-LAREGKVKGFTGIDDPYEPPLN 245 (279)
Q Consensus 174 ~-~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~--~~~----l~~-~~~~~~~~~~~~~r~~~~~~~~ 245 (279)
. ++..+.........++.++.. .+.|+|++|.+.+.+|+ ..+ +.. ......+......+.++|.. .
T Consensus 76 ~~vi~~gg~~~~~~~~~~~l~~~-----~~vi~L~~~~e~l~~Rl~~~~~~~rp~~~~~~~~~~l~~~~~~r~~~y~~-~ 149 (185)
T 3trf_A 76 NIILATGGGVVLDEKNRQQISET-----GVVIYLTASIDTQLKRIGQKGEMRRPLFIKNNSKEKLQQLNEIRKPLYQA-M 149 (185)
T ss_dssp SCEEECCTTGGGSHHHHHHHHHH-----EEEEEEECCHHHHHHHHHCCTTCSSCCCCCHHHHHHHHHHHHHHHHHHHH-H
T ss_pred CcEEecCCceecCHHHHHHHHhC-----CcEEEEECCHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHHHhh-c
Confidence 2 222222222333445444432 14589999999999888 321 000 00000111122234444432 1
Q ss_pred CceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 246 CEIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 246 a~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
++++|++ +..++++++++|++.+..
T Consensus 150 ad~~Idt---~~~~~~e~~~~I~~~l~~ 174 (185)
T 3trf_A 150 ADLVYPT---DDLNPRQLATQILVDIKQ 174 (185)
T ss_dssp CSEEEEC---TTCCHHHHHHHHHHHSCC
T ss_pred CCEEEEC---CCCCHHHHHHHHHHHHHH
Confidence 6799999 778999999999988764
No 83
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.12 E-value=7.6e-11 Score=106.62 Aligned_cols=125 Identities=10% Similarity=0.020 Sum_probs=82.4
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCC
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAG 174 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 174 (279)
.++.+++|++++|+|+||||||||+++|++++ .|.+|.|.++|.+.. .+... + .
T Consensus 164 l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~-~~~~g~i~i~~~~e~-------~~~~~--~----------------~ 217 (330)
T 2pt7_A 164 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIEDTEEI-------VFKHH--K----------------N 217 (330)
T ss_dssp HHHHHHHTCCEEEEESTTSCHHHHHHHGGGGS-CTTSCEEEEESSCCC-------CCSSC--S----------------S
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCcEEEECCeecc-------ccccc--h----------------h
Confidence 48899999999999999999999999999999 889999999986421 11100 0 0
Q ss_pred cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEEcc
Q 023675 175 VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLKQM 253 (279)
Q Consensus 175 ~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~~~ 253 (279)
...+... +++++| .+++++..+|++ +++|||.+.- ...+++....++ .-..+.+
T Consensus 218 ~i~~~~g--gg~~~r~~la~aL~~~p~i--lildE~~~~e----~~~~l~~~~~g~----------------~tvi~t~- 272 (330)
T 2pt7_A 218 YTQLFFG--GNITSADCLKSCLRMRPDR--IILGELRSSE----AYDFYNVLCSGH----------------KGTLTTL- 272 (330)
T ss_dssp EEEEECB--TTBCHHHHHHHHTTSCCSE--EEECCCCSTH----HHHHHHHHHTTC----------------CCEEEEE-
T ss_pred EEEEEeC--CChhHHHHHHHHhhhCCCE--EEEcCCChHH----HHHHHHHHhcCC----------------CEEEEEE-
Confidence 0000001 344555 778888889988 9999998721 122333333332 1134444
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 023675 254 GDDCPSPADMVETVVSYLD 272 (279)
Q Consensus 254 ~~~~~~~~e~~~~Il~~l~ 272 (279)
+..+..+.+++++..-.
T Consensus 273 --H~~~~~~~~dri~~l~~ 289 (330)
T 2pt7_A 273 --HAGSSEEAFIRLANMSS 289 (330)
T ss_dssp --ECSSHHHHHHHHHHHHH
T ss_pred --cccHHHHHhhhheehhc
Confidence 55667778888776543
No 84
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.12 E-value=2.9e-11 Score=97.89 Aligned_cols=141 Identities=13% Similarity=0.047 Sum_probs=80.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcchhcc--
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVICIAC-- 180 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~i~~-- 180 (279)
.+|+|+|++||||||+++.|+..+..+ ++++|.+..... .....+. ....+.. +..++.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~--------~~~~~~~----~~~~l~~-~~~vi~dr~ 63 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYP-----IIKGSSFELAKS--------GNEKLFE----HFNKLAD-EDNVIIDRF 63 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCC-----EEECCCHHHHTT--------CHHHHHH----HHHHHTT-CCSEEEESC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCe-----eecCcccccchh--------HHHHHHH----HHHHHHh-CCCeEEeee
Confidence 378999999999999999999988544 788887642110 0111111 1111111 1111111
Q ss_pred -------------cCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCC---------CccccC
Q 023675 181 -------------LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKG---------FTGIDD 238 (279)
Q Consensus 181 -------------~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~---------~~~~r~ 238 (279)
+.......+.........+.+ .|+|+.|.+.+.+|+.++ ...... .+..+.
T Consensus 64 ~~~~~v~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~i~l~~~~e~~~~R~~~r------~r~~~~~~~~~~~~~~~~~~~ 136 (173)
T 3kb2_A 64 VYSNLVYAKKFKDYSILTERQLRFIEDKIKAKAK-VVYLHADPSVIKKRLRVR------GDEYIEGKDIDSILELYREVM 136 (173)
T ss_dssp HHHHHHHTTTBTTCCCCCHHHHHHHHHHHTTTEE-EEEEECCHHHHHHHHHHH------SCSCCCHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHhhHhhHHHHHHHhccCCCCCE-EEEEeCCHHHHHHHHHhc------CCcchhhhHHHHHHHHHHHHH
Confidence 111122334444444344444 589999999999998542 111111 111122
Q ss_pred cCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 239 PYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 239 ~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
+.|.. ++++|++ +..++++++++|++.++.
T Consensus 137 ~~~~~--~~~~id~---~~~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 137 SNAGL--HTYSWDT---GQWSSDEIAKDIIFLVEL 166 (173)
T ss_dssp HTCSS--CEEEEET---TTSCHHHHHHHHHHHHHH
T ss_pred hhcCC--CEEEEEC---CCCCHHHHHHHHHHHHhC
Confidence 33332 6688887 667999999999998875
No 85
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.11 E-value=3e-11 Score=99.02 Aligned_cols=160 Identities=15% Similarity=0.051 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE-c----Ceecccccc-cCCCCCcccHHHHHHHHHH-HHHHHHhC
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL-D----GDNCRHGLN-RDLSFKAEDRVENIRRIGE-VAKLFADA 173 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l-d----gd~i~~~~~-~~~~~~~~~~~~~~~~v~~-~~~~~~~~ 173 (279)
++.+|+|+|++||||||+++.|+..+..+ ++ | |+.+++.+. ....|.... .+...+.+ +...+...
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~d~~~~g~~i~~~~~~g~~~~~~~~--~~~~~~~~~i~~~l~~~ 76 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGS-----FVFEPEEMGQALRKLTPGFSGDPQEHP--MWIPLMLDALQYASREA 76 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTC-----EECCTHHHHHHHHHTSTTCCSCGGGST--THHHHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCC-----EEEchhhhHHHHHHhCccccchhhhhH--HHHHHHHHHHHHHHHhC
Confidence 57899999999999999999999887543 34 5 333332221 111111111 11111111 12223332
Q ss_pred CcchhcccCChHHHHHHHHHHhC--CCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccccCcCCCCCCCceEEE
Q 023675 174 GVICIACLISPYRKDRDACRSML--PEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGIDDPYEPPLNCEIVLK 251 (279)
Q Consensus 174 ~~~~i~~~~~~~~~~r~~ar~l~--~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~r~~~~~~~~a~~~i~ 251 (279)
+..++.+........++..+..+ ....+..|+|++|.+.+.+|+.++-........+..+...+.++ .. ++ +||
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~~~~~~~~~~~~~~~~~-~~--~~-~Id 152 (183)
T 2vli_A 77 AGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQVNVGTVEDRLNELRGE-QF--QT-HID 152 (183)
T ss_dssp SSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHHTC----CCHHHHHHHHHHHTSG-GG--CS-EEE
T ss_pred CCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHHHhccccchhHHHHHHHHHhhccc-cc--ce-Eee
Confidence 43333332221122222222222 11223458999999999999754421000000011111112223 22 34 888
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC
Q 023675 252 QMGDDCPSPADMVETVVSYLDEN 274 (279)
Q Consensus 252 ~~~~~~~~~~e~~~~Il~~l~~~ 274 (279)
+ +..++++++++|++.+...
T Consensus 153 ~---~~~~~~~~~~~I~~~l~~~ 172 (183)
T 2vli_A 153 T---AGLGTQQVAEQIAAQVGLT 172 (183)
T ss_dssp C---TTCCHHHHHHHHHHHHTCC
T ss_pred C---CCCCHHHHHHHHHHHHHHh
Confidence 7 6689999999999998753
No 86
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.09 E-value=6.9e-10 Score=92.46 Aligned_cols=41 Identities=27% Similarity=0.276 Sum_probs=32.2
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
|+.+.+|++++|+||||||||||+++|++++ . .+.+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~-~----~~~~~~~~~ 41 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL-A----EIKISISHT 41 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHS-S----SEEECCCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC-C----CeEEeceec
Confidence 4677899999999999999999999999987 2 466777655
No 87
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.09 E-value=1.3e-12 Score=113.76 Aligned_cols=121 Identities=12% Similarity=0.103 Sum_probs=70.9
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc------ccCCCCCcccHHH--HHHHHHHHHHH
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL------NRDLSFKAEDRVE--NIRRIGEVAKL 169 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~------~~~~~~~~~~~~~--~~~~v~~~~~~ 169 (279)
..++|.+++|+|+|||||||+++.|++.+. .+.+++|+|.++..+ ....+....+... ....+..+...
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~---~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ---GNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTK 104 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT---TCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC---CCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHH
Confidence 566789999999999999999999999883 356789999987542 2233433333222 11222333333
Q ss_pred HHhCCcchhcccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhhH
Q 023675 170 FADAGVICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKGL 221 (279)
Q Consensus 170 ~~~~~~~~i~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~l 221 (279)
+...+...+++.......++......+. ...+..+++++|.+.+.+|...+.
T Consensus 105 ~~~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 105 LSSLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 3344433444433222222322222222 222334688999999999976553
No 88
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.08 E-value=3.7e-12 Score=107.97 Aligned_cols=107 Identities=16% Similarity=0.087 Sum_probs=62.9
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc---cccccCCCCCcccHHHHH-HHHHHHHHHHHh-C
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR---HGLNRDLSFKAEDRVENI-RRIGEVAKLFAD-A 173 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~---~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~-~ 173 (279)
+++|++++|+||||||||||+++|+++ .|++|.|.. .++. ......++|.++...+.+ .........+.. .
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~~enl~~~~~~~~~~~~~~~ 94 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ--ALQSKQVSR--IILTRPAVEAGEKLGFLPGTLNEKIDPYLRPLHDALRDMV 94 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH--HHHTTSCSE--EEEEECSCCTTCCCCSSCC------CTTTHHHHHHHTTTS
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC--CCcCCeeee--EEecCCchhhhcceEEecCCHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999999999999998 577888842 2221 112234566655432222 110000000000 0
Q ss_pred C---cchhcccCChHHHHH-HHHHHhCCCCCccEEEEeCCccc
Q 023675 174 G---VICIACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQV 212 (279)
Q Consensus 174 ~---~~~i~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~ 212 (279)
. +...... ..++++| .++++++.+|++ ++||||++.
T Consensus 95 ~~~~~~~~l~~-glGq~qrv~lAraL~~~p~l--llLDEPts~ 134 (208)
T 3b85_A 95 EPEVIPKLMEA-GIVEVAPLAYMRGRTLNDAF--VILDEAQNT 134 (208)
T ss_dssp CTTHHHHHHHT-TSEEEEEGGGGTTCCBCSEE--EEECSGGGC
T ss_pred cHHHHHHHHHh-CCchHHHHHHHHHHhcCCCE--EEEeCCccc
Confidence 0 0001111 2255666 889999999988 999999999
No 89
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.07 E-value=9.5e-12 Score=101.21 Aligned_cols=159 Identities=17% Similarity=0.244 Sum_probs=75.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccc-cCCCCCcccH-HHHHHHH-HHHHHHHHhCCcch
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLN-RDLSFKAEDR-VENIRRI-GEVAKLFADAGVIC 177 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~-~~~~~~~~~~-~~~~~~v-~~~~~~~~~~~~~~ 177 (279)
.|.+++|+|+|||||||+++.|++.+.. +++|+|.+..... ..+....+.. ...+... ......+.......
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~-----~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v 77 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM-----EFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIV 77 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC-----EEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeE
Confidence 4678999999999999999999999843 4888876632111 0000000000 0001000 01111111111111
Q ss_pred hcc--cCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH-hCCC-----CCCCccccCcCCCCCCCceE
Q 023675 178 IAC--LISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA-REGK-----VKGFTGIDDPYEPPLNCEIV 249 (279)
Q Consensus 178 i~~--~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~-~~~~-----~~~~~~~r~~~~~~~~a~~~ 249 (279)
+.. ........++.++.. + +.+++++|.+.+.+|+.++-.... .... +......+.++|.. .++++
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~----~-~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~~~~~~~~~~~r~~~~~~-~a~~~ 151 (173)
T 1kag_A 78 LATGGGSVKSRETRNRLSAR----G-VVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEE-IADVT 151 (173)
T ss_dssp EECCTTGGGSHHHHHHHHHH----S-EEEECCCCHHHHHSCC------CCSSSSCCCHHHHHHHHHHHHHHHHH-HCSEE
T ss_pred EECCCeEEecHHHHHHHHhC----C-EEEEEeCCHHHHHHHHhCCCCCCCCCCCCchHHHHHHHHHHHHHHHHh-hCCEE
Confidence 211 111122333333321 2 348999999999999864311000 0000 01111223344432 26788
Q ss_pred EEccCCCCCCHHHHHHHHHHHHHh
Q 023675 250 LKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 250 i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
|++ +..++++++++|+..+.+
T Consensus 152 id~---~~~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 152 IRT---DDQSAKVVANQIIHMLES 172 (173)
T ss_dssp C--------CHHHHHHHHHHHHC-
T ss_pred EEC---CCCCHHHHHHHHHHHHHh
Confidence 988 668999999999988753
No 90
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.06 E-value=2.9e-10 Score=99.54 Aligned_cols=44 Identities=27% Similarity=0.288 Sum_probs=40.4
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCC-ccEEEEcCeecc
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCR 142 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-~G~i~ldgd~i~ 142 (279)
.+++|++++|+|||||||||++++|++++ .|. +|.|.++|+++.
T Consensus 21 ~i~~g~~v~i~Gp~GsGKSTll~~l~g~~-~~~~~G~I~~~g~~i~ 65 (261)
T 2eyu_A 21 CHRKMGLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIE 65 (261)
T ss_dssp GGCSSEEEEEECSTTCSHHHHHHHHHHHH-HHHCCCEEEEEESSCC
T ss_pred hhCCCCEEEEECCCCccHHHHHHHHHHhC-CCCCCCEEEEcCCcce
Confidence 38999999999999999999999999999 676 899999998874
No 91
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.05 E-value=2.2e-10 Score=114.82 Aligned_cols=47 Identities=32% Similarity=0.355 Sum_probs=40.2
Q ss_pred CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHH-HHHcc
Q 023675 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACA-LSQAL 126 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~-L~~~l 126 (279)
..++++++++...++.||++++|++++|+|+||||||||++. |.+.+
T Consensus 501 ~~L~v~~l~~~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 501 GWLELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp CEEEEEEEEETTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred ceEEEEeeeecccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 347888887766677799999999999999999999999996 77654
No 92
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.02 E-value=3.7e-09 Score=87.99 Aligned_cols=35 Identities=26% Similarity=0.301 Sum_probs=28.7
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL 132 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G 132 (279)
+++++|++++|+|+|||||||+++.|++.+ .|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~-~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDP-STSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCT-TCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhh-CCCeE
Confidence 357899999999999999999999999998 55444
No 93
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.99 E-value=5.7e-10 Score=103.30 Aligned_cols=43 Identities=12% Similarity=-0.123 Sum_probs=36.6
Q ss_pred CChHHHHH-HHHHHhCCCC--CccEEEEeCCccchhccChhhHHHHHh
Q 023675 182 ISPYRKDR-DACRSMLPEG--DFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 182 ~~~~~~~r-~~ar~l~~~~--~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
+|+++++| .++++++.++ ++ ++||||+..|+......+.+.++
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~--LlLDEpt~~LD~~~~~~l~~~L~ 341 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPS--VVFDEVDAGIGGAAAIAVAEQLS 341 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSE--EEESSTTTTCCHHHHHHHHHHHH
T ss_pred cCHhHHHHHHHHHHHHhCCCCCE--EEEECCCCCCCHHHHHHHHHHHH
Confidence 68999998 8899999888 77 99999999999988877665543
No 94
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.97 E-value=1.9e-11 Score=100.01 Aligned_cols=150 Identities=17% Similarity=0.192 Sum_probs=79.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHHHHHHHhCCcch
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGVIC 177 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~~~~~~~~~~~~ 177 (279)
.++|+|+|||||||+++.|++.+.. .++|.|++..... +....+. ...++.. ..+...+......
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~-----~~~d~d~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~- 76 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL-----VFLDSDFLIEQKF---NQKVSEIFEQKRENFFREQEQKMADFFSSCEKA- 76 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHH---TSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSE-
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC-----CEEcccHHHHHHc---CCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCE-
Confidence 5899999999999999999998853 3889887642211 1111110 1111111 1111112111111
Q ss_pred hcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCC------CCCCccccCcCCCCCCCceEEE
Q 023675 178 IACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGK------VKGFTGIDDPYEPPLNCEIVLK 251 (279)
Q Consensus 178 i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~------~~~~~~~r~~~~~~~~a~~~i~ 251 (279)
++....+....+. +.... ..|+|+.|.+.+.+|..++.+. .... +......+.++|.. .++++||
T Consensus 77 vi~~g~~~~~~~~-----l~~~~-~~i~l~~~~e~~~~R~~~r~~~--~r~~~~~~~~i~~~~~~r~~~y~~-~~~~~Id 147 (175)
T 1via_A 77 CIATGGGFVNVSN-----LEKAG-FCIYLKADFEYLKKRLDKDEIS--KRPLFYDEIKAKKLYNERLSKYEQ-KANFILN 147 (175)
T ss_dssp EEECCTTGGGSTT-----GGGGC-EEEEEECCHHHHTTCCCGGGTT--TSCTTCCHHHHHHHHHHHHHHHHH-HCSEEEE
T ss_pred EEECCCCEehhhH-----HhcCC-EEEEEeCCHHHHHHHHhcccCC--CCCCcccHHHHHHHHHHHHHHHHh-cCCEEEE
Confidence 1111111000011 12222 3589999999999998544210 0001 11112223445532 2578999
Q ss_pred ccCCCCCCHHHHHHHHHHHHHhC
Q 023675 252 QMGDDCPSPADMVETVVSYLDEN 274 (279)
Q Consensus 252 ~~~~~~~~~~e~~~~Il~~l~~~ 274 (279)
+ +..++++++++|++.++.-
T Consensus 148 t---~~~~~eev~~~I~~~l~~~ 167 (175)
T 1via_A 148 I---ENKNIDELLSEIKKVIKEG 167 (175)
T ss_dssp C---TTCCHHHHHHHHHHHHC--
T ss_pred C---CCCCHHHHHHHHHHHHHhc
Confidence 8 7789999999999988753
No 95
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.96 E-value=1.8e-10 Score=93.38 Aligned_cols=47 Identities=19% Similarity=0.215 Sum_probs=42.5
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
..||++++|++++|+|+||||||||+++|++.+ |.+|.|.++|.++.
T Consensus 25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l--~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI--GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT--TCCSCCCCCTTTCE
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC--CCCCeEEECCEeee
Confidence 348899999999999999999999999999998 67899999987763
No 96
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.94 E-value=1.2e-09 Score=97.55 Aligned_cols=48 Identities=27% Similarity=0.304 Sum_probs=43.3
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
..+|.+++|++++|+|+|||||||+++.|++++ .+.+|.|.++|.++.
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTF 139 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCS
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH-HHcCCeEEEEeeccc
Confidence 347788999999999999999999999999999 688999999998763
No 97
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.92 E-value=1.6e-09 Score=91.82 Aligned_cols=36 Identities=44% Similarity=0.674 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+.+++|+|+|||||||+++.|++.++.+ ++|.+++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~-----~~d~g~i 39 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWH-----LLDSGAI 39 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCcce
Confidence 35789999999999999999999987432 5555444
No 98
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.90 E-value=7.1e-10 Score=91.50 Aligned_cols=154 Identities=18% Similarity=0.137 Sum_probs=82.0
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHc-cccCCccEEEEcCeecccc--cccCCC--CCcc-----cHHHHHHHHHH
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQA-LHWRGKLTYILDGDNCRHG--LNRDLS--FKAE-----DRVENIRRIGE 165 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~-l~~~~~G~i~ldgd~i~~~--~~~~~~--~~~~-----~~~~~~~~v~~ 165 (279)
|+..++|..++|+|++||||||+++.|+.. + |..++|.|++... ....++ +... .....+..
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~-----g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--- 75 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELD-----GFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDF--- 75 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHST-----TEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHH---
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHH---
Confidence 667788999999999999999999999998 4 3447887765221 111111 0000 01111112
Q ss_pred HHHHHHhCCcchhcccCChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhh-----HHHH-HhCCCCCCCcccc
Q 023675 166 VAKLFADAGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG-----LYKL-AREGKVKGFTGID 237 (279)
Q Consensus 166 ~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~-----l~~~-~~~~~~~~~~~~r 237 (279)
+.......+.. ++..... .++.. .+ ..|++++|.+.+.+|+.++ .... .....+..+...+
T Consensus 76 l~~~~~~~g~~-vi~~~~~---------~~~~~~~~~-~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~q~~~~l~~~~ 144 (184)
T 1y63_A 76 MEPIMVSRGNH-VVDYHSS---------ELFPERWFH-MVVVLHTSTEVLFERLTKRQYSEAKRAENMEAEIQCICEEEA 144 (184)
T ss_dssp HHHHHTSSSEE-EEECSCC---------TTSCGGGCS-EEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHhccCCE-EEeCchH---------hhhhhccCC-EEEEEECCHHHHHHHHHhCCCChhhhHhhHHHHHHHHHHHHH
Confidence 22222111211 1111110 11111 22 3489999999999997543 1111 1111122223334
Q ss_pred CcCCCCCCCceEEEccCCCCCCHHHH---HHHHHHHHHhC
Q 023675 238 DPYEPPLNCEIVLKQMGDDCPSPADM---VETVVSYLDEN 274 (279)
Q Consensus 238 ~~~~~~~~a~~~i~~~~~~~~~~~e~---~~~Il~~l~~~ 274 (279)
.++|. ++++|++ +..+++++ +++|++.+..+
T Consensus 145 ~~~y~---~~~vi~~---n~~~~~~~~~~v~~i~~~l~~~ 178 (184)
T 1y63_A 145 RDAYE---DDIVLVR---ENDTLEQMAATVEEIRERVEVL 178 (184)
T ss_dssp HHHSC---GGGEEEE---ECSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhc---cCcEEEC---CCCCHHHHHHHHHHHHHHHHHH
Confidence 55554 3678887 66789888 88888777653
No 99
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.90 E-value=4.4e-09 Score=106.13 Aligned_cols=43 Identities=26% Similarity=0.231 Sum_probs=37.3
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHH
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALS 123 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~ 123 (279)
.++++++......+.||++++|++++|+|+||||||||++.|.
T Consensus 629 ~L~v~~l~~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 629 WLEVVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EEEEEEECSSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred EEEEecCcccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4778887666667789999999999999999999999999853
No 100
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.90 E-value=1.7e-10 Score=94.60 Aligned_cols=149 Identities=15% Similarity=0.116 Sum_probs=82.4
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccc--c---cCCCCCc-ccHHHHHHHHHHHHHHHHh
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGL--N---RDLSFKA-EDRVENIRRIGEVAKLFAD 172 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~--~---~~~~~~~-~~~~~~~~~v~~~~~~~~~ 172 (279)
..++..|+|+|++||||||+++.|+..++. .+++.+++.... . ....+.. ......... +...+..
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~~~-----~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 79 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGKELASKSGL-----KYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDE---LDNQMRE 79 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHH---HHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHHHHHHHhCC-----eEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHH---HHHHHhc
Confidence 446788999999999999999999988742 367766542111 0 0001111 011111122 2222233
Q ss_pred CCcchhcccCChHHHHHHHHHHhCCC--CCccEEEEeCCccchhccChhh-----HHH-HHhCCCCCCCccccCcCCCCC
Q 023675 173 AGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVPLQVCEARDPKG-----LYK-LAREGKVKGFTGIDDPYEPPL 244 (279)
Q Consensus 173 ~~~~~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p~~~l~~R~~~~-----l~~-~~~~~~~~~~~~~r~~~~~~~ 244 (279)
.+.+. .... +..+.. +. ..|+|++|.+.+.+|+.++ ... ......+......+.++|.
T Consensus 80 g~~vv--~~~~---------~~~~~~~~~~-~vi~L~~~~e~l~~R~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~y~-- 145 (180)
T 3iij_A 80 GGVIV--DYHG---------CDFFPERWFH-IVFVLRTDTNVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYK-- 145 (180)
T ss_dssp CCEEE--ECSC---------CTTSCGGGCS-EEEEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHSC--
T ss_pred CCEEE--Eech---------hhhcchhcCC-EEEEEECCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcC--
Confidence 23221 1111 001111 12 3489999999999998654 111 1111223334444555565
Q ss_pred CCceEEEccCCCCCCHHHH---HHHHHHHHHh
Q 023675 245 NCEIVLKQMGDDCPSPADM---VETVVSYLDE 273 (279)
Q Consensus 245 ~a~~~i~~~~~~~~~~~e~---~~~Il~~l~~ 273 (279)
+++++++ +..+++++ +++|+.++++
T Consensus 146 -~~~~i~~---~~~~~~ev~~~v~~i~~~l~~ 173 (180)
T 3iij_A 146 -EEIVHQL---PSNKPEELENNVDQILKWIEQ 173 (180)
T ss_dssp -GGGEEEE---ECSSHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEc---CCCCHHHHHHHHHHHHHHHHH
Confidence 4688988 77899888 8888887765
No 101
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.89 E-value=5.3e-11 Score=110.60 Aligned_cols=121 Identities=14% Similarity=0.032 Sum_probs=73.4
Q ss_pred CCcceeccCCe--------------------EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-cc-c----
Q 023675 93 DRQQLLQQKGC--------------------VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-GL-N---- 146 (279)
Q Consensus 93 ~~~sl~i~~g~--------------------~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-~~-~---- 146 (279)
+..++.+++|+ +++|+|+||||||||+|+|.|++ .|.+|.|.++|.++.. .. .
T Consensus 40 ~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~-~p~~GsI~~~g~~~t~~~~v~q~~~ 118 (413)
T 1tq4_A 40 NLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIG-NEEEGAAKTGVVEVTMERHPYKHPN 118 (413)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCC-TTSTTSCCCCC----CCCEEEECSS
T ss_pred hhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCC-CccCceEEECCeecceeEEeccccc
Confidence 34588888888 99999999999999999999999 8899999988865421 00 0
Q ss_pred -------cCCCCCcccHHHHHHHHHHHHHHH--HhCCcchhcccCChH--HHHH-HHHHHhCC----------CCCccEE
Q 023675 147 -------RDLSFKAEDRVENIRRIGEVAKLF--ADAGVICIACLISPY--RKDR-DACRSMLP----------EGDFIEV 204 (279)
Q Consensus 147 -------~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~i~~~~~~~--~~~r-~~ar~l~~----------~~~~i~i 204 (279)
...++.... . .+.+....+ .+...... .+++ +++| .++++++. ++++ +
T Consensus 119 ~~~ltv~D~~g~~~~~--~---~~~~~L~~~~L~~~~~~~~---lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdl--l 188 (413)
T 1tq4_A 119 IPNVVFWDLPGIGSTN--F---PPDTYLEKMKFYEYDFFII---ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDS--D 188 (413)
T ss_dssp CTTEEEEECCCGGGSS--C---CHHHHHHHTTGGGCSEEEE---EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHH--H
T ss_pred cCCeeehHhhcccchH--H---HHHHHHHHcCCCccCCeEE---eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcc--c
Confidence 011111100 0 011111111 11111111 3333 4454 88888877 5555 6
Q ss_pred EEeCCccchhccChhhHHHH
Q 023675 205 FMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 205 ~ld~p~~~l~~R~~~~l~~~ 224 (279)
++|||+..++......+.+.
T Consensus 189 lLDEPtsgLD~~~~~~l~~~ 208 (413)
T 1tq4_A 189 ITNEADGEPQTFDKEKVLQD 208 (413)
T ss_dssp HHHHHTTCCTTCCHHHHHHH
T ss_pred ccCcccccCCHHHHHHHHHH
Confidence 88999999988877665443
No 102
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.89 E-value=1.6e-08 Score=83.42 Aligned_cols=26 Identities=42% Similarity=0.410 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
|++++|+||||||||||+++|++++.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999983
No 103
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.89 E-value=1.4e-09 Score=93.56 Aligned_cols=36 Identities=31% Similarity=0.409 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+.+++|+|++||||||+++.|++.++. .++|.+.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~-----~~~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGA-----RYLDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----CcccCCcH
Confidence 4568999999999999999999988743 36777665
No 104
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.88 E-value=1.8e-09 Score=92.19 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=22.7
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHH-Hcc
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALS-QAL 126 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~-~~l 126 (279)
...||++++|++++|+||||||||||+++|+ +++
T Consensus 18 ~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 18 GPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4559999999999999999999999999999 987
No 105
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.87 E-value=1.2e-09 Score=90.15 Aligned_cols=113 Identities=14% Similarity=0.139 Sum_probs=65.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc----ccccCCCCCcccHHHHHHHHHHHHHH-HHh-CCcch
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH----GLNRDLSFKAEDRVENIRRIGEVAKL-FAD-AGVIC 177 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~----~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~-~~~~~ 177 (279)
.++|+|+||||||||+++|++.+. +.++|.+... .....+++..+... ....+ .... +.. .-...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~------i~~~g~~~~~~~~~~~~~~ig~~~~~~~-~~~~~--~~~~~~~~~~~~~~ 72 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG------KRAIGFWTEEVRDPETKKRTGFRIITTE-GKKKI--FSSKFFTSKKLVGS 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG------GGEEEEEEEEEC------CCEEEEEETT-CCEEE--EEETTCCCSSEETT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC------CcCCCEEhhhhccccccceeEEEeecCc-HHHHH--HHhhcCCccccccc
Confidence 589999999999999999999983 2344433211 11112233222210 00000 0000 000 00111
Q ss_pred hcccCChHHHHH-HHHHH-----hCCCCCccEEEEeC--CccchhccChhhHHHHHhC
Q 023675 178 IACLISPYRKDR-DACRS-----MLPEGDFIEVFMDV--PLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 178 i~~~~~~~~~~r-~~ar~-----l~~~~~~i~i~ld~--p~~~l~~R~~~~l~~~~~~ 227 (279)
.+..+++++++| .++++ ++.+|++ +++|| |++.++....+.+.+.+..
T Consensus 73 ~~~~lSgG~~qr~~la~aa~~~~l~~~p~l--lilDEigp~~~ld~~~~~~l~~~l~~ 128 (178)
T 1ye8_A 73 YGVNVQYFEELAIPILERAYREAKKDRRKV--IIIDEIGKMELFSKKFRDLVRQIMHD 128 (178)
T ss_dssp EEECHHHHHHHHHHHHHHHHHHHHHCTTCE--EEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred cccCcCHHHHHHHHHHhhccccccccCCCE--EEEeCCCCcccCCHHHHHHHHHHHhc
Confidence 233467788887 78886 7888888 99999 9999987776666665554
No 106
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.86 E-value=8.2e-09 Score=104.47 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=36.7
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHH
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L 122 (279)
.+++++++.....+.||++++|++++|+|+||||||||++.|
T Consensus 647 ~L~v~~l~~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 647 QLTVVGAREHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp EEEEEEECSTTCCSEEEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred eEEEecCccccccCceEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 477887765556777999999999999999999999999985
No 107
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.86 E-value=8.3e-10 Score=88.98 Aligned_cols=155 Identities=15% Similarity=0.164 Sum_probs=78.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eecccccccCCCCCcccHHHHHHH---------HHH-HHHHH-
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDLSFKAEDRVENIRR---------IGE-VAKLF- 170 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~~~~~~~~~~~~~~~~~~~~~---------v~~-~~~~~- 170 (279)
.+|+|+|++||||||+++.| ..++.+ +++. +.++...... +............ +.. ....+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 74 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIE-AKPGERLMDFAKRLREIYGDGVVARLCVEELG 74 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHH-C---CCHHHHHHHHHHHHCTTHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhc-CCChhHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 37899999999999999999 655322 5553 3333211100 0111111111111 111 11111
Q ss_pred HhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCCCCCccc--------cCcCCC
Q 023675 171 ADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKVKGFTGI--------DDPYEP 242 (279)
Q Consensus 171 ~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~~~~~~~--------r~~~~~ 242 (279)
...+...+.++. ....+++..+..... .+..|++++|.+.+.+|+..+-.. ........+... ...+..
T Consensus 75 ~~~~~~vi~dg~-~~~~~~~~l~~~~~~-~~~~i~l~~~~~~~~~R~~~R~~~-~~~~~~~~~~~r~~~~~~~~~~~~~~ 151 (179)
T 3lw7_A 75 TSNHDLVVFDGV-RSLAEVEEFKRLLGD-SVYIVAVHSPPKIRYKRMIERLRS-DDSKEISELIRRDREELKLGIGEVIA 151 (179)
T ss_dssp SCCCSCEEEECC-CCHHHHHHHHHHHCS-CEEEEEEECCHHHHHHHHHTCC-----CCCHHHHHHHHHHHHHHTHHHHHH
T ss_pred hcCCCeEEEeCC-CCHHHHHHHHHHhCC-CcEEEEEECCHHHHHHHHHhccCC-CCcchHHHHHHHHHhhhccChHhHHH
Confidence 022333344443 344555556665554 355699999999999987543100 000000000000 111222
Q ss_pred CCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 243 PLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 243 ~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
.++++|++ +. +++++.++|.+.+..
T Consensus 152 --~ad~vId~---~~-~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 152 --MADYIITN---DS-NYEEFKRRCEEVTDR 176 (179)
T ss_dssp --TCSEEEEC---CS-CHHHHHHHHHHHHHH
T ss_pred --hCCEEEEC---CC-CHHHHHHHHHHHHHH
Confidence 37788887 54 899999999888765
No 108
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.86 E-value=4e-09 Score=96.27 Aligned_cols=47 Identities=28% Similarity=0.308 Sum_probs=43.0
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.+|.+++|++++|+|+|||||||+++.|++++ .+.+|.|.+++.++.
T Consensus 150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l-~~~~G~V~l~g~D~~ 196 (359)
T 2og2_A 150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL-KNEGTKVLMAAGDTF 196 (359)
T ss_dssp CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEECCCCS
T ss_pred cceecCCCeEEEEEcCCCChHHHHHHHHHhhc-cccCCEEEEeccccc
Confidence 47788999999999999999999999999999 678999999998763
No 109
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.85 E-value=6e-09 Score=87.52 Aligned_cols=153 Identities=15% Similarity=0.110 Sum_probs=83.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHH---H----HH--------------
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRV---E----NI-------------- 160 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~---~----~~-------------- 160 (279)
..+|+|.|++||||||+++.|+..|+.+ ++|++-++.. ....+++.+... + ++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~-----~~D~~~~~~~-a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 79 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIP-----LYSKELLDEV-AKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLE 79 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCC-----EECHHHHHHT-TCC---------------------------------
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcC-----EECHHHHHHH-HHhcCCCHHHHHHHhhhchhHHHHHhcccccccccc
Confidence 3589999999999999999999999766 8896543211 000111111000 0 00
Q ss_pred ----HHHHHHHHHHH--hCCcchhcccCChHHHHHHHHHHhCCC-CCccEEEEeCCccchhccChhh-----------HH
Q 023675 161 ----RRIGEVAKLFA--DAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKG-----------LY 222 (279)
Q Consensus 161 ----~~v~~~~~~~~--~~~~~~i~~~~~~~~~~r~~ar~l~~~-~~~i~i~ld~p~~~l~~R~~~~-----------l~ 222 (279)
....++...+. ..+..++.+. .++ .++.+ +..+.|||++|++.+.+|..++ +.
T Consensus 80 ~~~~~~~~~~i~~la~~~~~~~Vi~Gr-~g~--------~vl~~~~~~~~V~L~A~~e~r~~R~~~~~~~~~~~~~~~i~ 150 (201)
T 3fdi_A 80 QDIAIRQFNFIRKKANEEKESFVIVGR-CAE--------EILSDNPNMISAFILGDKDTKTKRVMEREGVDEKTALNMMK 150 (201)
T ss_dssp CHHHHHHHHHHHHHHHTSCCCEEEEST-THH--------HHTTTCTTEEEEEEEECHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCEEEEEC-Ccc--------hhcCCCCCeEEEEEECCHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 11122222233 2232222211 121 12222 2456799999999999997542 11
Q ss_pred HHH--hCCCCCCCccccCcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675 223 KLA--REGKVKGFTGIDDPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDEN 274 (279)
Q Consensus 223 ~~~--~~~~~~~~~~~r~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~ 274 (279)
+.. +...+..+++ +.+.+ +..++++|++ +..+++++++.|+.+++.+
T Consensus 151 ~~d~~R~~~y~~~~~-~~~~~-~~~~dl~Idt---~~l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 151 KMDKMRKVYHNFYCE-SKWGD-SRTYDICIKI---GKVDVDTATDMIIKYIDSR 199 (201)
T ss_dssp HHHHHHHHHHHHHCS-SCTTB-GGGCSEEEEE---SSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC-CCCCC-cccCCEEEEC---CCCCHHHHHHHHHHHHHHh
Confidence 100 0011111122 23333 2347899999 8899999999999998764
No 110
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.84 E-value=1.7e-09 Score=87.94 Aligned_cols=113 Identities=20% Similarity=0.130 Sum_probs=64.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHH-ccccCCccEEEEcCeecccccccC-C----CCCcccHHHHHHHHHHHHHHHH---h
Q 023675 102 GCVIWITGLSGSGKSTLACALSQ-ALHWRGKLTYILDGDNCRHGLNRD-L----SFKAEDRVENIRRIGEVAKLFA---D 172 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~-~l~~~~~G~i~ldgd~i~~~~~~~-~----~~~~~~~~~~~~~v~~~~~~~~---~ 172 (279)
+.+|+|+|++||||||+++.|+. .+ |..+++.|.++..+... . .+...........+......+. .
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~-----~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP-----GFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGD 76 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST-----TEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCS
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC-----CcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhcc
Confidence 36899999999999999999998 33 45688887775433221 1 1322221111122222222222 3
Q ss_pred CCcchhcccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChh
Q 023675 173 AGVICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 173 ~~~~~i~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
.+..++++.......+++..+.++. ..++..+++++|.+.+.+|+.+
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~~ 125 (181)
T 1ly1_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSK 125 (181)
T ss_dssp SCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHTT
T ss_pred CCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHhc
Confidence 4555555543333344444443332 1234458999999999988754
No 111
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.84 E-value=8.3e-11 Score=96.73 Aligned_cols=153 Identities=20% Similarity=0.213 Sum_probs=80.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HH-HHHHHHhCCc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GE-VAKLFADAGV 175 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~-~~~~~~~~~~ 175 (279)
.+|+|+|++||||||+++.|+..++.+ ++|.|++..... +....+. ...+... .. +..+......
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQRT---GRSIADIFATDGEQEFRRIEEDVVRAALADHDG 74 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---SSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCS
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHHc---CCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCe
Confidence 469999999999999999999988554 889888643221 1111100 0111111 11 1112222221
Q ss_pred -chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHH-HhCC----CCCCCccccCcCCCCCCCceE
Q 023675 176 -ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKL-AREG----KVKGFTGIDDPYEPPLNCEIV 249 (279)
Q Consensus 176 -~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~-~~~~----~~~~~~~~r~~~~~~~~a~~~ 249 (279)
+..+.........++.++ . . ..|++++|.+.+.+|+.++-... .... .+..+...+.++|.. .++++
T Consensus 75 vi~~g~~~v~~~~~~~~l~----~-~-~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~~~~~r~~~~~~-~~~~~ 147 (184)
T 2iyv_A 75 VLSLGGGAVTSPGVRAALA----G-H-TVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRR-VATMR 147 (184)
T ss_dssp EEECCTTGGGSHHHHHHHT----T-S-CEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHHHHHHHHHHHHH-HCSEE
T ss_pred EEecCCcEEcCHHHHHHHc----C-C-eEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHHHHHHHHHHHhc-cCCEE
Confidence 111111111123343322 2 2 34999999999999975320000 0000 011111122344422 26789
Q ss_pred EEccCCCCCCHHHHHHHHHHHHHh
Q 023675 250 LKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 250 i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
|++ +..++++++++|++.+..
T Consensus 148 Idt---~~~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 148 VDT---NRRNPGAVVRHILSRLQV 168 (184)
T ss_dssp EEC---SSSCHHHHHHHHHTTSCC
T ss_pred EEC---CCCCHHHHHHHHHHHHhh
Confidence 998 668999999999887653
No 112
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.84 E-value=5.5e-10 Score=95.51 Aligned_cols=163 Identities=14% Similarity=0.130 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc-----ccccC-CC-CCcc-------------------
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH-----GLNRD-LS-FKAE------------------- 154 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~-----~~~~~-~~-~~~~------------------- 154 (279)
+..+|+|.|++||||||+++.|+..|..+ ++|++.++. ++... +. +...
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~-----~~d~~~~~~~a~~~g~~~~~~~~~~E~~~~~~~~~~~~~~~~~~~~ 87 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIH-----FYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGGRKIDLHS 87 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHCC--------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCc-----EEcHHHHHHHHHHcCCCHHHHHHHHhhccccHHHHHhccccccccc
Confidence 35689999999999999999999998654 889765532 11100 00 0000
Q ss_pred ------c---HHHHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCC-CCccEEEEeCCccchhccChhhH--H
Q 023675 155 ------D---RVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPE-GDFIEVFMDVPLQVCEARDPKGL--Y 222 (279)
Q Consensus 155 ------~---~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~-~~~i~i~ld~p~~~l~~R~~~~l--~ 222 (279)
+ ....+....++...+...+..++.+. .++- ..+ .+.+ +..+.|||++|.+.+.+|..++- -
T Consensus 88 ~~~~~~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Gr-ggg~----vl~-~~~~~~~~~~VfL~A~~e~r~~Ri~~~~~~~ 161 (223)
T 3hdt_A 88 KPSPNDKLTSPENLFKFQSEVMRELAESEPCIFVGR-AAGY----VLD-QDEDIERLIRIFVYTDKVKKVQRVMEVDCID 161 (223)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHSCEEEEST-THHH----HHH-HCTTCCEEEEEEEECCHHHHHHHHHHHHTCC
T ss_pred ccccccccccHHHHHHHHHHHHHHHHhCCCEEEEeC-Ccch----hcc-cccCCCCeEEEEEECCHHHHHHHHHHhcCCC
Confidence 0 00001111111111222222222212 2211 111 1122 34577999999999999975420 0
Q ss_pred HHHhCCCCCCCccccCcCC---------CCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCCc
Q 023675 223 KLAREGKVKGFTGIDDPYE---------PPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGFL 277 (279)
Q Consensus 223 ~~~~~~~~~~~~~~r~~~~---------~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~~ 277 (279)
.......+......|.+|| .+..++++|++ +..+++++++.|+.+++.++++
T Consensus 162 ~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT---~~l~~eevv~~I~~~i~~~~~~ 222 (223)
T 3hdt_A 162 EERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINT---TKLTLEETAELIKAYIRLKGFM 222 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEEC---TTCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEEC---CCCCHHHHHHHHHHHHHHhCCC
Confidence 0000001111112233333 34457899999 8899999999999999988764
No 113
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.83 E-value=1.6e-08 Score=102.18 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=36.0
Q ss_pred cccCChHHHHH-HHHHHhCCCC---CccEEEEeCCccchhccChhhHHHH
Q 023675 179 ACLISPYRKDR-DACRSMLPEG---DFIEVFMDVPLQVCEARDPKGLYKL 224 (279)
Q Consensus 179 ~~~~~~~~~~r-~~ar~l~~~~---~~i~i~ld~p~~~l~~R~~~~l~~~ 224 (279)
+..+|++++|| .+|++++.++ .+ ++||||+..|+....+.+++.
T Consensus 803 ~~~LSGGErQRV~LAraL~~~p~~p~L--LILDEPTsGLD~~~~~~L~~l 850 (916)
T 3pih_A 803 ATTLSGGEAQRIKLASELRKRDTGRTL--YILDEPTVGLHFEDVRKLVEV 850 (916)
T ss_dssp STTCCHHHHHHHHHHHHHTSCCCSSEE--EEEESTTTTCCHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhhCCCCCCE--EEEECCCCCCCHHHHHHHHHH
Confidence 45689999999 9999999865 46 899999999998877765543
No 114
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.81 E-value=9e-11 Score=105.34 Aligned_cols=129 Identities=16% Similarity=0.049 Sum_probs=75.7
Q ss_pred CCCCeEEeecceeecC---Cccee-----------------------ccCCeEEEEEcCCCChHHHHHHHHHHccccCCc
Q 023675 78 KSTNILWHKNSVDKRD---RQQLL-----------------------QQKGCVIWITGLSGSGKSTLACALSQALHWRGK 131 (279)
Q Consensus 78 ~~~~i~~~~~~~~~~~---~~sl~-----------------------i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~ 131 (279)
..+.|+++++++.|.. ..++. +++|++++|+|+||||||||+++|++++ .|..
T Consensus 40 ~~~~i~~~~v~~~y~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll-~~~~ 118 (312)
T 3aez_A 40 LGEQIDLLEVEEVYLPLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALL-ARWD 118 (312)
T ss_dssp TTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHH-HTST
T ss_pred CCCeEEeeehhhhhhhHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhc-cccC
Confidence 3456888888888842 11332 7899999999999999999999999999 5543
Q ss_pred c---EEEEcCeecc-c-ccccC------CCCCcccHHHHHHHHHHHHHHHHhCCcc-hhcccCChHHHHH-HHHHHhCCC
Q 023675 132 L---TYILDGDNCR-H-GLNRD------LSFKAEDRVENIRRIGEVAKLFADAGVI-CIACLISPYRKDR-DACRSMLPE 198 (279)
Q Consensus 132 G---~i~ldgd~i~-~-~~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~i~~~~~~~~~~r-~~ar~l~~~ 198 (279)
| ..++.-+... . ..... .+....... ..+.+....+. .+.. ......++++++| .++++++.+
T Consensus 119 G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~---~~~~~~L~~l~-~~~~~~~~~~lS~G~~qRv~~a~al~~~ 194 (312)
T 3aez_A 119 HHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNR---RALMRFVTSVK-SGSDYACAPVYSHLHYDIIPGAEQVVRH 194 (312)
T ss_dssp TCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCH---HHHHHHHHHHH-TTCSCEEEEEEETTTTEEEEEEEEEECS
T ss_pred CCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHH---HHHHHHHHHhC-CCcccCCcccCChhhhhhhhhHHHhccC
Confidence 3 2233322221 0 00000 111111111 11222222233 2322 2334566667776 567788888
Q ss_pred CCccEEEEeCCccch
Q 023675 199 GDFIEVFMDVPLQVC 213 (279)
Q Consensus 199 ~~~i~i~ld~p~~~l 213 (279)
+++ +++|+|...+
T Consensus 195 p~i--lIlDep~~~~ 207 (312)
T 3aez_A 195 PDI--LILEGLNVLQ 207 (312)
T ss_dssp CSE--EEEECTTTTC
T ss_pred CCE--EEECCccccC
Confidence 887 8999997764
No 115
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.81 E-value=2e-08 Score=90.18 Aligned_cols=43 Identities=21% Similarity=0.150 Sum_probs=34.1
Q ss_pred eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
++++|. .+|.+..++.+.+| +.+|+|+||||||||+.+|.-.+
T Consensus 6 L~i~nf-r~~~~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 6 LYLKGF-KSFGRPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EEEESB-TTBCSCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred EEEeCc-eeecCCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence 556663 24555667888888 99999999999999999999544
No 116
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.80 E-value=1.5e-09 Score=89.56 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=80.6
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccc-cccC------------CC-CCcccHHHHHHHHH
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHG-LNRD------------LS-FKAEDRVENIRRIG 164 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~-~~~~------------~~-~~~~~~~~~~~~v~ 164 (279)
..++.+|+|+|++||||||+++.|+..++. .+++.+++... .... .+ ..+. ......+.
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~-----~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~--~~~~~~~~ 78 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGY-----THLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPL--ETVLDMLR 78 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCH--HHHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCC-----eEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCH--HHHHHHHH
Confidence 346789999999999999999999998743 36776554211 0000 00 0000 01111111
Q ss_pred HHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhCCCC-----------CCC
Q 023675 165 EVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLAREGKV-----------KGF 233 (279)
Q Consensus 165 ~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~~~~-----------~~~ 233 (279)
+........+..++.+.......+++.....+..+.+ .++|++|.+.+.+|+.++-. ..++. ..+
T Consensus 79 ~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~-vi~l~~~~e~~~~R~~~R~~---~~~~~~~~~~~~~~r~~~~ 154 (196)
T 2c95_A 79 DAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTL-LLYVDAGPETMTQRLLKRGE---TSGRVDDNEETIKKRLETY 154 (196)
T ss_dssp HHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHHHHHT---SSSCGGGSHHHHHHHHHHH
T ss_pred HHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHccCC---cCCCCCCCHHHHHHHHHHH
Confidence 1111111223333443322222334434444455553 48999999999998753310 00110 111
Q ss_pred ccccCcC---CCCCCCceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 234 TGIDDPY---EPPLNCEIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 234 ~~~r~~~---~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
...+.++ |......++|++ +.++++++++|.+.+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~Id~----~~~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 155 YKATEPVIAFYEKRGIVRKVNA----EGSVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHHTHHHHHHHHHHTCEEEEEC----CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcEEEEEC----CCCHHHHHHHHHHHHHH
Confidence 1112221 221111134554 47899999999988865
No 117
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.79 E-value=9.3e-10 Score=100.66 Aligned_cols=56 Identities=23% Similarity=0.156 Sum_probs=49.4
Q ss_pred EEeeccee---ec----------------CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 83 LWHKNSVD---KR----------------DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 83 ~~~~~~~~---~~----------------~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
+|++++|+ |+ +..++.+++|++++|+|+||||||||+++|++++ .|.+|.|.+++.
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~-~~~~g~I~ie~~ 211 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEI-PFDQRLITIEDV 211 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTS-CTTSCEEEEESS
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcC-CCCceEEEECCc
Confidence 67777777 64 3348899999999999999999999999999999 789999999974
No 118
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.78 E-value=1.6e-09 Score=87.44 Aligned_cols=154 Identities=19% Similarity=0.266 Sum_probs=81.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc-----HHHHHHHH-HHHHHHHHhCCcch
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-----RVENIRRI-GEVAKLFADAGVIC 177 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~-----~~~~~~~v-~~~~~~~~~~~~~~ 177 (279)
.|+|+|++||||||+++.|+..+..+ ++|.|++..... +....+ ....+..+ ..+...+...+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~V 73 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKRE---GLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVV 73 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---TSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHc---CCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeE
Confidence 68999999999999999999987544 778776632211 111000 00111111 11111222222222
Q ss_pred hcccC--ChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHH-HHh--CCCCCCCccccCcCCCCCCCceEEEc
Q 023675 178 IACLI--SPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYK-LAR--EGKVKGFTGIDDPYEPPLNCEIVLKQ 252 (279)
Q Consensus 178 i~~~~--~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~-~~~--~~~~~~~~~~r~~~~~~~~a~~~i~~ 252 (279)
+.... ......++.++ .+. ..|++++|.+.+.+|+.++-.. ... ...+...+..+.++|.. ++++| +
T Consensus 74 i~~g~~~~~~~~~~~~l~----~~~-~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~i~~~~~~~~~~~~~--~~~~i-~ 145 (168)
T 2pt5_A 74 ISTGGGLGANEEALNFMK----SRG-TTVFIDIPFEVFLERCKDSKERPLLKRPLDEIKNLFEERRKIYSK--ADIKV-K 145 (168)
T ss_dssp EECCHHHHTCHHHHHHHH----TTS-EEEEEECCHHHHHHHCBCTTCCBGGGSCGGGTHHHHHHHHHHHTT--SSEEE-E
T ss_pred EECCCCEeCCHHHHHHHH----cCC-EEEEEECCHHHHHHHHhCCCCCCCCcchHHHHHHHHHHHHHHHHh--CCEEE-C
Confidence 22110 01122333332 223 3489999999999998542000 000 00011111112233332 67888 7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCC
Q 023675 253 MGDDCPSPADMVETVVSYLDENGF 276 (279)
Q Consensus 253 ~~~~~~~~~e~~~~Il~~l~~~~~ 276 (279)
+..++++++++|.+.+.+.++
T Consensus 146 ---~~~~~~~~~~~i~~~l~~~~~ 166 (168)
T 2pt5_A 146 ---GEKPPEEVVKEILLSLEGNAL 166 (168)
T ss_dssp ---CSSCHHHHHHHHHHHHHTSCC
T ss_pred ---CCCCHHHHHHHHHHHHHhccC
Confidence 778999999999999988664
No 119
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.77 E-value=7e-10 Score=99.09 Aligned_cols=120 Identities=10% Similarity=0.010 Sum_probs=75.2
Q ss_pred CeEEeecceeec----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc----ccccc-CCCC
Q 023675 81 NILWHKNSVDKR----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR----HGLNR-DLSF 151 (279)
Q Consensus 81 ~i~~~~~~~~~~----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~----~~~~~-~~~~ 151 (279)
.|++++++|+|. .+.+|.+++|++++|+||||||||||+++|+|++ +|.|...+.... ..+.. .+.+
T Consensus 101 ~i~~~~vs~~y~~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~----~G~I~~~v~q~~~lf~~ti~~~ni~~ 176 (305)
T 2v9p_A 101 FFNYQNIELITFINALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL----GGSVLSFANHKSHFWLASLADTRAAL 176 (305)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH----TCEEECGGGTTSGGGGGGGTTCSCEE
T ss_pred eEEEEEEEEEcChhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc----CceEEEEecCccccccccHHHHhhcc
Confidence 478889998885 3349999999999999999999999999999998 688865442211 01111 2222
Q ss_pred CcccHHHHHHHHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccCh
Q 023675 152 KAEDRVENIRRIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP 218 (279)
Q Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~ 218 (279)
.+..... +.+....+...++. +..+|+++++| +|+++.+|++ ++ ++.++....
T Consensus 177 ~~~~~~~----~~~~i~~~L~~gld--g~~LSgGqkQR--ARAll~~p~i--Ll----Ts~LD~~~~ 229 (305)
T 2v9p_A 177 VDDATHA----CWRYFDTYLRNALD--GYPVSIDRKHK--AAVQIKAPPL--LV----TSNIDVQAE 229 (305)
T ss_dssp EEEECHH----HHHHHHHTTTGGGG--TCCEECCCSSC--CCCEECCCCE--EE----EESSCSTTC
T ss_pred CccccHH----HHHHHHHHhHccCC--ccCcCHHHHHH--HHHHhCCCCE--EE----ECCCCHHHH
Confidence 2111111 11111110111222 55678888888 9999999887 33 555555443
No 120
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.77 E-value=4.6e-08 Score=82.22 Aligned_cols=27 Identities=33% Similarity=0.498 Sum_probs=25.9
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
++|++++|+||||||||||++.|++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 579999999999999999999999998
No 121
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.76 E-value=1.1e-08 Score=83.92 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=28.9
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l 136 (279)
.+|++++|+||||||||||+++|.+.+.....|.+..
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 3689999999999999999999999873223344433
No 122
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.76 E-value=5.9e-09 Score=88.07 Aligned_cols=43 Identities=23% Similarity=0.256 Sum_probs=35.5
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHcccc-C-----CccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHW-R-----GKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~-----~~G~i~ldgd~ 140 (279)
-+++|++++|+||||||||||++.|++.+.. + +.+.+++++.+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 5789999999999999999999999996622 2 45588888765
No 123
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.76 E-value=3.4e-09 Score=87.07 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=29.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+.+|+|+|++||||||+++.|+..++. .+++.+++
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~-----~~i~~d~~ 40 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGW-----VHLSAGDL 40 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCC-----eEeeHHHH
Confidence 4578999999999999999999998743 36776554
No 124
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.75 E-value=4e-10 Score=106.18 Aligned_cols=139 Identities=10% Similarity=0.013 Sum_probs=87.7
Q ss_pred CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc-E-EEEcCeecccccccCCCCCcccH-
Q 023675 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL-T-YILDGDNCRHGLNRDLSFKAEDR- 156 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G-~-i~ldgd~i~~~~~~~~~~~~~~~- 156 (279)
..++++|+++.|. +.+|.+++|++++|+|+||||||||+++|++++ .|.+| . |++||+. +..+ ++.++..
T Consensus 117 ~mi~~~nl~~~y~-~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~-~p~~G~~pI~vdg~~-~~~i----~~vpq~~~ 189 (460)
T 2npi_A 117 TMKYIYNLHFMLE-KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA-LKFNAYQPLYINLDP-QQPI----FTVPGCIS 189 (460)
T ss_dssp THHHHHHHHHHHH-HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT-HHHHCCCCEEEECCT-TSCS----SSCSSCCE
T ss_pred chhhhhhhhehhh-cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc-cccCCceeEEEcCCc-cCCe----eeeccchh
Confidence 3477888888886 579999999999999999999999999999999 78899 8 9999853 2211 1111100
Q ss_pred ----------HHHH-H--------HHHHHHHHHHhCCcchh--cccCChHHHHH-HHHHH--hCCCCCc--cEEEEeC-C
Q 023675 157 ----------VENI-R--------RIGEVAKLFADAGVICI--ACLISPYRKDR-DACRS--MLPEGDF--IEVFMDV-P 209 (279)
Q Consensus 157 ----------~~~~-~--------~v~~~~~~~~~~~~~~i--~~~~~~~~~~r-~~ar~--l~~~~~~--i~i~ld~-p 209 (279)
.+.+ . .......++...++... ...+++++++| .++++ ++.+|++ --+++|| |
T Consensus 190 l~~~~~~~tv~eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpP 269 (460)
T 2npi_A 190 ATPISDILDAQLPTWGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPS 269 (460)
T ss_dssp EEECCSCCCTTCTTCSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCC
T ss_pred hcccccccchhhhhcccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCc
Confidence 0000 0 00000000011111111 33467788888 88888 8887632 0168999 9
Q ss_pred ccchhccChhhHHHHHh
Q 023675 210 LQVCEARDPKGLYKLAR 226 (279)
Q Consensus 210 ~~~l~~R~~~~l~~~~~ 226 (279)
+..++.. .+.+.+..+
T Consensus 270 ts~LD~~-~~~l~~l~~ 285 (460)
T 2npi_A 270 ISQLDEN-LAELHHIIE 285 (460)
T ss_dssp GGGSCSS-CHHHHHHHH
T ss_pred ccccChh-HHHHHHHHH
Confidence 9999887 333444333
No 125
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.75 E-value=9.9e-09 Score=87.78 Aligned_cols=43 Identities=23% Similarity=0.265 Sum_probs=36.5
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHH--HccccCCccEEEEcCeec
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALS--QALHWRGKLTYILDGDNC 141 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~--~~l~~~~~G~i~ldgd~i 141 (279)
-+++|++++|+||||||||||+++|+ +.+ .++.+.++++++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~-~~~~~~~~~~~~~~ 70 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE-EYGEPGVFVTLEER 70 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSC
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCeEEEEEccCC
Confidence 57899999999999999999999999 554 56678888887654
No 126
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.74 E-value=4.3e-09 Score=89.54 Aligned_cols=169 Identities=17% Similarity=0.101 Sum_probs=85.5
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC-eecccccccCC-------------CCCcccHHHHHH
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG-DNCRHGLNRDL-------------SFKAEDRVENIR 161 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg-d~i~~~~~~~~-------------~~~~~~~~~~~~ 161 (279)
+-..+++.+|+|+||+||||+|.++.|+..|+. .+|.. |-+|..+...- .+.+.+. ...
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~-----~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~--~~~ 95 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHF-----NHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEV--VLA 95 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCC-----EEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHH--HHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHHHHCC-----ceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHH--HHH
Confidence 346678899999999999999999999999853 36664 33443221100 0111110 011
Q ss_pred HHHHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHHHHHhC--------CCCCCC
Q 023675 162 RIGEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLARE--------GKVKGF 233 (279)
Q Consensus 162 ~v~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~--------~~~~~~ 233 (279)
.+.+......+.....+.++..-...|.+.+......+.+ .++|++|.+.+.+|+..+-....+. .++..+
T Consensus 96 lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~-vi~l~v~~e~~~~Rl~~R~~~~~R~DD~~e~i~~Rl~~Y 174 (217)
T 3umf_A 96 LLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLC-VINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKRFRTF 174 (217)
T ss_dssp HHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHSCC------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCE-EEeccCCHHHHHHHHhcccccCCCCCCCHHHHHHHHHHH
Confidence 1111111111112222333332222333334444445444 4899999999999875431100000 011111
Q ss_pred cccc---CcCCCCCCCceEEEccCCCCCCHHHHHHHHHHHHHhCCC
Q 023675 234 TGID---DPYEPPLNCEIVLKQMGDDCPSPADMVETVVSYLDENGF 276 (279)
Q Consensus 234 ~~~r---~~~~~~~~a~~~i~~~~~~~~~~~e~~~~Il~~l~~~~~ 276 (279)
.... ..||....--..|| ...+++++.++|.+.|++.|+
T Consensus 175 ~~~t~pl~~~Y~~~~~l~~Id----g~~~~eeV~~~I~~~l~k~G~ 216 (217)
T 3umf_A 175 NELTKPVIEHYKQQNKVITID----ASGTVDAIFDKVNHELQKFGV 216 (217)
T ss_dssp HHHTHHHHHHHHTTTCEEEEE----TTSCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHhcCCEEEEE----CCCCHHHHHHHHHHHHHHcCC
Confidence 1111 12343321113344 467999999999999998774
No 127
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.74 E-value=2.8e-09 Score=100.71 Aligned_cols=52 Identities=17% Similarity=0.079 Sum_probs=46.5
Q ss_pred eeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 89 VDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 89 ~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+...++.+|++++ ++++|+||||||||||+++|++++ .|++|.|.++|.++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTAL-IPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHH-CCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCC-CCCCCEEEECCEEcc
Confidence 3445577999999 999999999999999999999999 899999999998763
No 128
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.74 E-value=6.1e-10 Score=90.28 Aligned_cols=152 Identities=16% Similarity=0.165 Sum_probs=78.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCccc-----HHHHHHHHH-HHHHHHHhCCcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAED-----RVENIRRIG-EVAKLFADAGVI 176 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~-----~~~~~~~v~-~~~~~~~~~~~~ 176 (279)
.+|+|+|++||||||+++.|+..+.. .++|.|.+..... +....+ ....+..+. .+...+. .+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~-----~~id~d~~~~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~ 73 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGY-----EFVDTDIFMQHTS---GMTVADVVAAEGWPGFRRRESEALQAVA-TPNR 73 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTC-----EEEEHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCC-----cEEcccHHHHHHh---CCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCe
Confidence 46899999999999999999998743 3788776632221 111111 011111111 1111111 1111
Q ss_pred hhccc--CChHHHHHHHHHHhCCCCCccEEEEeCCccchhccCh--hhH-----HH-HHhCCCCCCCccccCcCCCCCCC
Q 023675 177 CIACL--ISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDP--KGL-----YK-LAREGKVKGFTGIDDPYEPPLNC 246 (279)
Q Consensus 177 ~i~~~--~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~--~~l-----~~-~~~~~~~~~~~~~r~~~~~~~~a 246 (279)
++... .......++.++. +. ..|++++|.+.+.+|+. ++. .. ......+......+.++|.. +
T Consensus 74 vi~~g~~~~~~~~~~~~l~~----~~-~~i~l~~~~e~~~~R~~~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~ 146 (173)
T 1e6c_A 74 VVATGGGMVLLEQNRQFMRA----HG-TVVYLFAPAEELALRLQASLQAHQRPTLTGRPIAEEMEAVLREREALYQD--V 146 (173)
T ss_dssp EEECCTTGGGSHHHHHHHHH----HS-EEEEEECCHHHHHHHHHHHHCSCCCCCTTHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred EEECCCcEEeCHHHHHHHHc----CC-eEEEEECCHHHHHHHHhhccCCCCCCcCCCCCHHHHHHHHHHHHHHHHHh--C
Confidence 12111 1112334443332 12 34899999999988874 220 00 00000011111112233332 5
Q ss_pred ceEEEccCCCCCCHHHHHHHHHHHHHh
Q 023675 247 EIVLKQMGDDCPSPADMVETVVSYLDE 273 (279)
Q Consensus 247 ~~~i~~~~~~~~~~~e~~~~Il~~l~~ 273 (279)
+++|++ +..++++++++|...++.
T Consensus 147 ~~~Id~---~~~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 147 AHYVVD---ATQPPAAIVCELMQTMRL 170 (173)
T ss_dssp CSEEEE---TTSCHHHHHHHHHHHTTC
T ss_pred cEEEEC---CCCCHHHHHHHHHHHhcc
Confidence 789998 768999999999987753
No 129
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.74 E-value=5e-09 Score=86.17 Aligned_cols=36 Identities=22% Similarity=0.372 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+|.+|+|+|++||||||+++.|+..++. .+++.+++
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~-----~~i~~d~~ 37 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGY-----THLSAGEL 37 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCC-----eEEeHHHH
Confidence 4678999999999999999999998743 36776554
No 130
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.73 E-value=3.8e-10 Score=91.44 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=75.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccH-----HHHHHHH-HHHHHHHHhCCc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDR-----VENIRRI-GEVAKLFADAGV 175 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~-----~~~~~~v-~~~~~~~~~~~~ 175 (279)
-++++|+|++||||||+++.|+..+..+ ++|.|.+..... +....+. ...+..+ .+....+...+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~-----~id~D~~~~~~~---g~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~ 78 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLE-----VLDTDMIISERV---GLSVREIFEELGEDNFRMFEKNLIDELKTLKT 78 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHH---TSCHHHHHHHTCHHHHHHHHHHHHHHHHTCSS
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHh---CCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCC
Confidence 4689999999999999999999988655 788877632211 1111110 0111111 111111111111
Q ss_pred chhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhHH-HH-HhC--CCCCCCccccCcCCCCCCCceEEE
Q 023675 176 ICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGLY-KL-ARE--GKVKGFTGIDDPYEPPLNCEIVLK 251 (279)
Q Consensus 176 ~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~-~~-~~~--~~~~~~~~~r~~~~~~~~a~~~i~ 251 (279)
..++....+...... +..+. ..|++++|.+.+.+|+.++.. .+ ... ..+......+.++|.. .++++|+
T Consensus 79 ~~Vi~~g~g~~~~~~-----l~~~~-~vi~l~~~~e~~~~Rl~~r~~~~r~~~~~~~~~~~~~~~r~~~~~~-~a~~~Id 151 (168)
T 1zuh_A 79 PHVISTGGGIVMHEN-----LKGLG-TTFYLKMDFETLIKRLNQKEREKRPLLNNLTQAKELFEKRQALYEK-NASFIID 151 (168)
T ss_dssp CCEEECCGGGGGCGG-----GTTSE-EEEEEECCHHHHHHHHCC--------CCTTHHHHHHHHHHHHHHHH-TCSEEEE
T ss_pred CEEEECCCCEechhH-----HhcCC-EEEEEECCHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHHHHH-HCCEEEE
Confidence 101111111000011 23333 348999999999998754310 00 000 0011111223344432 2679999
Q ss_pred ccCCCCCCHHHHHHHHHHHH
Q 023675 252 QMGDDCPSPADMVETVVSYL 271 (279)
Q Consensus 252 ~~~~~~~~~~e~~~~Il~~l 271 (279)
+ +. ++++++++|.+.+
T Consensus 152 ~---~~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 152 A---RG-GLNNSLKQVLQFI 167 (168)
T ss_dssp G---GG-CHHHHHHHHHHC-
T ss_pred C---CC-CHHHHHHHHHHHh
Confidence 8 66 9999999988754
No 131
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.70 E-value=1.1e-08 Score=87.02 Aligned_cols=58 Identities=19% Similarity=0.156 Sum_probs=43.0
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccC--CccEEEEcCeecccccccCCCCCcccH
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR--GKLTYILDGDNCRHGLNRDLSFKAEDR 156 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~--~~G~i~ldgd~i~~~~~~~~~~~~~~~ 156 (279)
..++|++++|+||||||||||+++|++.+ .| ..|.|.+.+.+.+......++|.++..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~-~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~ 71 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ-PLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 71 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHS-CTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccC-CCCceEEEEEecCCCCCcccccCceEEECCH
Confidence 57899999999999999999999999998 53 578888888776543333455555543
No 132
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.69 E-value=2.6e-08 Score=91.39 Aligned_cols=45 Identities=29% Similarity=0.311 Sum_probs=38.9
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCC-ccEEEEcCeecc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRG-KLTYILDGDNCR 142 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~-~G~i~ldgd~i~ 142 (279)
+.+++|++++|+|+|||||||++++|++++ .+. +|.|.+.++++.
T Consensus 131 l~~~~g~~i~ivG~~GsGKTTll~~l~~~~-~~~~~g~I~~~e~~~e 176 (372)
T 2ewv_A 131 LCHRKMGLILVTGPTGSGKSTTIASMIDYI-NQTKSYHIITIEDPIE 176 (372)
T ss_dssp HTTSSSEEEEEECSSSSSHHHHHHHHHHHH-HHHSCCEEEEEESSCC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHHhhc-CcCCCcEEEEecccHh
Confidence 347899999999999999999999999999 565 899987777653
No 133
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.68 E-value=2.2e-08 Score=93.23 Aligned_cols=104 Identities=13% Similarity=0.031 Sum_probs=69.1
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGV 175 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 175 (279)
.+.-+++.+|+|+|+|||||||+++.|+..+. .++++.|+++. .. .+...+......+.
T Consensus 252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~~------------~~----~~~~~~~~~l~~g~ 310 (416)
T 3zvl_A 252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG-----YVHVNRDTLGS------------WQ----RCVSSCQAALRQGK 310 (416)
T ss_dssp CSCCSSCCEEEEESCTTSSHHHHHHHHTGGGT-----CEECCGGGSCS------------HH----HHHHHHHHHHHTTC
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcC-----cEEEccchHHH------------HH----HHHHHHHHHHhcCC
Confidence 45566789999999999999999999998773 45888887741 11 11222222223455
Q ss_pred chhcccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChhh
Q 023675 176 ICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPKG 220 (279)
Q Consensus 176 ~~i~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~~ 220 (279)
.++++.......+|..++.++. ...+..+++++|.+.+.+|+.++
T Consensus 311 ~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~~~R 357 (416)
T 3zvl_A 311 RVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFR 357 (416)
T ss_dssp CEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHHHHH
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHHHhh
Confidence 5666665555555544444432 22456689999999999998655
No 134
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.68 E-value=6.5e-08 Score=88.21 Aligned_cols=90 Identities=13% Similarity=0.103 Sum_probs=56.6
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccCCCCCcccHHHHHHHHHHHHHHHHhCCcc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRDLSFKAEDRVENIRRIGEVAKLFADAGVI 176 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 176 (279)
+...+|.+++|+|||||||||++++|.+.++....|.|....+++.........+..+. ..+
T Consensus 118 l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~----------------~~~-- 179 (356)
T 3jvv_A 118 VSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQR----------------EVH-- 179 (356)
T ss_dssp HHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE----------------EBT--
T ss_pred HHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeee----------------eec--
Confidence 35678889999999999999999999999943336777666665531111000000000 000
Q ss_pred hhcccCChHHHHHHHHHHhCCCCCccEEEEeCCcc
Q 023675 177 CIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQ 211 (279)
Q Consensus 177 ~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~ 211 (279)
..... -...+++++..+|++ +++|||.+
T Consensus 180 --~~~~~---~~~~La~aL~~~Pdv--illDEp~d 207 (356)
T 3jvv_A 180 --RDTLG---FSEALRSALREDPDI--ILVGEMRD 207 (356)
T ss_dssp --TTBSC---HHHHHHHHTTSCCSE--EEESCCCS
T ss_pred --cccCC---HHHHHHHHhhhCcCE--EecCCCCC
Confidence 00111 112677888899998 99999974
No 135
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.67 E-value=1.4e-08 Score=85.17 Aligned_cols=30 Identities=30% Similarity=0.390 Sum_probs=25.7
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++++|++++|+||||||||||+++|++++
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999999999999998
No 136
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.65 E-value=4.5e-08 Score=81.42 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=30.2
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
-.++.+|+|+|++||||||+++.|+..++ ..+++.+++
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g-----~~~i~~d~~ 49 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYS-----FVHLSAGDL 49 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSS-----CEEEEHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcC-----ceEEeHHHH
Confidence 34567899999999999999999998874 346776554
No 137
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.63 E-value=4.1e-09 Score=94.20 Aligned_cols=61 Identities=21% Similarity=0.078 Sum_probs=49.9
Q ss_pred CCeEEeecceeecC---Ccceec-------------------cCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEE
Q 023675 80 TNILWHKNSVDKRD---RQQLLQ-------------------QKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYI 135 (279)
Q Consensus 80 ~~i~~~~~~~~~~~---~~sl~i-------------------~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ 135 (279)
+.|++++++..|.. ..++.+ .+|++++|+|+||||||||+++|++++ . |.+|.|.
T Consensus 36 ~~i~~~~v~~~y~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l-~~~~~~G~i~ 114 (308)
T 1sq5_A 36 EDLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALL-SRWPEHRRVE 114 (308)
T ss_dssp TTCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHH-TTSTTCCCEE
T ss_pred cccchHhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHH-hhCCCCCeEE
Confidence 45778888877742 236665 899999999999999999999999998 5 8899998
Q ss_pred E---cCeec
Q 023675 136 L---DGDNC 141 (279)
Q Consensus 136 l---dgd~i 141 (279)
+ ||...
T Consensus 115 vi~~d~~~~ 123 (308)
T 1sq5_A 115 LITTDGFLH 123 (308)
T ss_dssp EEEGGGGBC
T ss_pred EEecCCccC
Confidence 8 77654
No 138
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.62 E-value=1.8e-08 Score=95.11 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=42.5
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
...+|.+.+|++++|+|+||||||||++.|++++ .+.+|.|++++.+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll-~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF-EQQGKSVMLAAGDT 331 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEECCCT
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHh-hhcCCeEEEecCcc
Confidence 3458899999999999999999999999999999 68889999976554
No 139
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.61 E-value=1.1e-08 Score=84.52 Aligned_cols=162 Identities=15% Similarity=0.086 Sum_probs=81.0
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec-ccccc--------------cCCCCCcccHHHHHHHH
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC-RHGLN--------------RDLSFKAEDRVENIRRI 163 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i-~~~~~--------------~~~~~~~~~~~~~~~~v 163 (279)
.+++.+|+|+|++||||||+++.|+..++ ..+++.+++ +.... ..... +. ......+
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~-----~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~-~~--~~~~~~~ 80 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG-----FTHLSTGELLREELASESERSKLIRDIMERGDLV-PS--GIVLELL 80 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT-----CEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCC-CH--HHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC-----CeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcC-CH--HHHHHHH
Confidence 44678999999999999999999999884 336776554 21110 00000 00 0111111
Q ss_pred HHHHHHHHhCCcchhcccCChHHHHHHHHHHhCCCCCccEEEEeCCccchhccChhhH-----HHHH---hCCCCCCCcc
Q 023675 164 GEVAKLFADAGVICIACLISPYRKDRDACRSMLPEGDFIEVFMDVPLQVCEARDPKGL-----YKLA---REGKVKGFTG 235 (279)
Q Consensus 164 ~~~~~~~~~~~~~~i~~~~~~~~~~r~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l-----~~~~---~~~~~~~~~~ 235 (279)
.+........+..++.+.......++..+...+..+++ .|++++|.+.+.+|+.++- .... -..++..+..
T Consensus 81 ~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~-~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~r~~~~~~ 159 (199)
T 2bwj_A 81 KEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQL-VICMDCSADTMTNRLLQMSRSSLPVDDTTKTIAKRLEAYYR 159 (199)
T ss_dssp HHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSE-EEEEECCHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCE-EEEEECCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 11111111123334444332223344334444434454 5899999999988874320 0000 0000000111
Q ss_pred ccCc---CCCCCCCc-eEEEccCCCCCCHHHHHHHHHHHHHhC
Q 023675 236 IDDP---YEPPLNCE-IVLKQMGDDCPSPADMVETVVSYLDEN 274 (279)
Q Consensus 236 ~r~~---~~~~~~a~-~~i~~~~~~~~~~~e~~~~Il~~l~~~ 274 (279)
...+ +|... .. ++|+ +..++++++++|.+.+.+.
T Consensus 160 ~~~~~~~~~~~~-~~~~~id----~~~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 160 ASIPVIAYYETK-TQLHKIN----AEGTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp HHHHHHHHHHHH-SEEEEEE----TTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCEEEEE----CCCCHHHHHHHHHHHHHHh
Confidence 1111 22211 23 4455 3578999999999888754
No 140
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.61 E-value=2.5e-08 Score=93.38 Aligned_cols=59 Identities=17% Similarity=0.055 Sum_probs=51.4
Q ss_pred CCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 80 TNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
..++++++++.|..+. =|.+.+|++++|+|+||||||||+++|++++ .++.|.|.++|.
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~-~~~~G~i~~~G~ 193 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYT-RADVIVVGLIGE 193 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESC
T ss_pred CceEEeccceecCCCceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEece
Confidence 4577888888886321 2899999999999999999999999999999 899999999998
No 141
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.60 E-value=1.4e-07 Score=80.73 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=30.0
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l 136 (279)
.++|.+|+|.|++||||||+++.|++.+ .. .+.+..
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l-~~-~~~~~~ 58 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRL-VK-DYDVIM 58 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHH-TT-TSCEEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHH-hc-CCCcee
Confidence 4589999999999999999999999999 44 444543
No 142
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.60 E-value=1.4e-07 Score=78.71 Aligned_cols=31 Identities=39% Similarity=0.415 Sum_probs=27.1
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccC
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR 129 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~ 129 (279)
.++|.+|+|+|++||||||+++.|+..+..+
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3568899999999999999999999987544
No 143
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.60 E-value=3.1e-08 Score=90.05 Aligned_cols=59 Identities=24% Similarity=0.081 Sum_probs=49.0
Q ss_pred CeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 81 NILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
.++.++++..|..+. -|.+.+|++++|+|+||||||||+++|++.+ .++.|.+.+.|.+
T Consensus 45 ~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~-~~~~g~i~~~G~~ 108 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGA-SADIIVLALIGER 108 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHS-CCSEEEEEEESCC
T ss_pred CeeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCC-CCCEEEEEEeccc
Confidence 455666666665221 3899999999999999999999999999999 8899999998865
No 144
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.58 E-value=2.9e-08 Score=88.63 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=38.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+|++++|+|+|||||||+++.|++++ .|.+|.|.++|.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll-~~~~g~V~l~g~D~~ 141 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY-QNLGKKVMFCAGDTF 141 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH-HTTTCCEEEECCCCS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH-HhcCCEEEEEeecCC
Confidence 68999999999999999999999999 788999999998863
No 145
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.56 E-value=1e-07 Score=85.09 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=37.3
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++...+|++++|+|+|||||||++..|++.+ .+..+.+.+.+.|.
T Consensus 98 ~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l-~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 98 NVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF-VDEGKSVVLAAADT 142 (306)
T ss_dssp CCCSSSCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEECT
T ss_pred cccCCCCeEEEEEcCCCChHHHHHHHHHHHH-HhcCCEEEEEcccc
Confidence 4456789999999999999999999999999 56667777665544
No 146
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.56 E-value=1.6e-08 Score=84.21 Aligned_cols=34 Identities=32% Similarity=0.325 Sum_probs=29.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+|+|+|++||||||+++.|++.++.+ ++|.+.+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~-----~~d~d~~~ 37 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP-----YLSSGLLY 37 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc-----eeccchHH
Confidence 89999999999999999999988544 78887764
No 147
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.56 E-value=8.1e-09 Score=93.53 Aligned_cols=60 Identities=20% Similarity=0.082 Sum_probs=50.0
Q ss_pred eEEeecceeec-----CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 82 ILWHKNSVDKR-----DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 82 i~~~~~~~~~~-----~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
++.+++++.|. ++.+|++.+|++++|+|+||||||||++.|++.+ .|..|.|.+.+.++.
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~-~~~~g~v~i~~~d~~ 94 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL-TAAGHKVAVLAVDPS 94 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH-HHTTCCEEEEEECGG
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh-hhCCCEEEEEEEcCc
Confidence 44555555553 3448899999999999999999999999999999 788999999988763
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.55 E-value=2.6e-08 Score=83.65 Aligned_cols=43 Identities=33% Similarity=0.330 Sum_probs=36.7
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCeec
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDNC 141 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~i 141 (279)
.++|++++|+|+||||||||+++|++++.. +..|.|.+|+..+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 468999999999999999999999999942 2478888888665
No 149
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.55 E-value=4.6e-08 Score=86.46 Aligned_cols=113 Identities=20% Similarity=0.150 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccccccc-CC----CCCcccHHHHH-HHHHHHHHHHH---h
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNR-DL----SFKAEDRVENI-RRIGEVAKLFA---D 172 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~-~~----~~~~~~~~~~~-~~v~~~~~~~~---~ 172 (279)
+.+|+|+|+|||||||+++.|+..+ .|..+++.|.++..+.. .. .+.... .... ..+.+...... .
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~ 76 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYTKKK-EGIVTGMQFDTAKSILYGGD 76 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CCHHH-HHHHHHHHHHHHHHHTTSCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccchhh-hhHHHHHHHHHHHHHHhhcc
Confidence 3689999999999999999999854 14568888877543321 01 122111 1111 11222222222 3
Q ss_pred CCcchhcccCChHHHHHHHHHHhCC--CCCccEEEEeCCccchhccChh
Q 023675 173 AGVICIACLISPYRKDRDACRSMLP--EGDFIEVFMDVPLQVCEARDPK 219 (279)
Q Consensus 173 ~~~~~i~~~~~~~~~~r~~ar~l~~--~~~~i~i~ld~p~~~l~~R~~~ 219 (279)
.+..++++.......+++..+.++. ..++..+++++|.+.+.+|+.+
T Consensus 77 ~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~~~ 125 (301)
T 1ltq_A 77 SVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNSK 125 (301)
T ss_dssp TCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHHHh
Confidence 4545555554444445544444332 2234568999999999988754
No 150
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.54 E-value=3.1e-09 Score=91.08 Aligned_cols=57 Identities=18% Similarity=0.060 Sum_probs=41.5
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++++++...|.. ++.+.+ ++++|+||||||||||+++|++.+ .|.+|.|.++|.++
T Consensus 9 ~l~l~~~~~~~~~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~-~~~~G~i~~~g~~~ 65 (227)
T 1qhl_A 9 SLTLINWNGFFAR--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTAL-IPDLTLLHFRNTTE 65 (227)
T ss_dssp EEEEEEETTEEEE--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHH-SCCTTTC-------
T ss_pred EEEEEeeecccCC--EEEEcC-cEEEEECCCCCCHHHHHHHHhccc-ccCCCeEEECCEEc
Confidence 3667776554543 677766 889999999999999999999999 88999999999876
No 151
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.54 E-value=4.5e-08 Score=80.23 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=30.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
.+|+|+|++||||||+++.|+..+...+....+++.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 36899999999999999999999854443466777443
No 152
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.54 E-value=5.4e-08 Score=81.90 Aligned_cols=35 Identities=26% Similarity=0.295 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+.+++|+|++||||||+++.|++.++.+ ++|.+.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~-----~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMI-----YVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCc-----eecCChH
Confidence 5689999999999999999999987432 6666554
No 153
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.53 E-value=1.5e-07 Score=78.53 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=26.2
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
...+|.+++|+|+|||||||+++.|+..+
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45689999999999999999999999987
No 154
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.52 E-value=9e-09 Score=85.74 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=30.6
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
-..|.+|+|+|++||||||+++.|+..+..+ +++.+++
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~ 54 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGEL 54 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHH
Confidence 3456799999999999999999999987544 6775544
No 155
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.50 E-value=3.4e-08 Score=94.56 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=44.3
Q ss_pred ecCCcce-eccCCeEEEEEcCCCChHHHHHHH--HHHccccCCccEEEEcCeec
Q 023675 91 KRDRQQL-LQQKGCVIWITGLSGSGKSTLACA--LSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 91 ~~~~~sl-~i~~g~~i~lvG~sGsGKSTl~~~--L~~~l~~~~~G~i~ldgd~i 141 (279)
..++.++ .+++|++++|+|+||||||||+++ +++.+ .|++|.++++|.+.
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~-~~~~g~i~v~g~~~ 79 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-EFDEPGVFVTFEET 79 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-HHCCCEEEEESSSC
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-hCCCCEEEEEEeCC
Confidence 3455689 999999999999999999999999 68988 77899999999764
No 156
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.50 E-value=1.5e-07 Score=78.39 Aligned_cols=29 Identities=38% Similarity=0.585 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccC
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWR 129 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~ 129 (279)
+|.+|+|.|++||||||+++.|+..+...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 47899999999999999999999988543
No 157
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.50 E-value=2.8e-08 Score=92.47 Aligned_cols=61 Identities=25% Similarity=0.284 Sum_probs=48.4
Q ss_pred CeEEeecceeecCCc---ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 81 NILWHKNSVDKRDRQ---QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~---sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.++++++++.|.... .+..++|++++|+|||||||||++++|.+.+ .+.+|.|.+.++++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l-~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGLQEL-NSSERNILTVEDPIE 206 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHH-CCTTSCEEEEESSCC
T ss_pred CCCHHHcCCCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhc-CCCCCEEEEecccch
Confidence 456666766664322 2234789999999999999999999999999 677899999998873
No 158
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.50 E-value=5e-07 Score=75.39 Aligned_cols=31 Identities=32% Similarity=0.463 Sum_probs=26.8
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccC
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR 129 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~ 129 (279)
.++|.+|+|+|++||||||+++.|+..+..+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4578899999999999999999999987544
No 159
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=98.49 E-value=3e-07 Score=84.00 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=36.9
Q ss_pred ccCChHHHHH-HHHHHhC------CCCCccEEEEeCCccchhccChhhHHHHHh
Q 023675 180 CLISPYRKDR-DACRSML------PEGDFIEVFMDVPLQVCEARDPKGLYKLAR 226 (279)
Q Consensus 180 ~~~~~~~~~r-~~ar~l~------~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~ 226 (279)
..+|+++++| .++++++ .+|++ ++||||+..++......+++.+.
T Consensus 278 ~~LSgGe~qr~~la~al~~~~~~~~~p~~--lllDEpt~~LD~~~~~~~~~~l~ 329 (365)
T 3qf7_A 278 RGLSGGERALISISLAMSLAEVASGRLDA--FFIDEGFSSLDTENKEKIASVLK 329 (365)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTCCE--EEEESCCTTSCHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHHhhhcccCCCCE--EEEeCCCccCCHHHHHHHHHHHH
Confidence 3588999998 8888887 68888 99999999999988777665544
No 160
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.49 E-value=5.1e-08 Score=87.93 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=39.7
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.++|++++|+|+|||||||+++.|++.+ .+..|.|.+.+.++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l-~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWL-KNHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH-HhcCCEEEEEeeccc
Confidence 4789999999999999999999999999 788999999998874
No 161
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.48 E-value=8.9e-08 Score=81.89 Aligned_cols=38 Identities=32% Similarity=0.358 Sum_probs=30.5
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
-.+|.+++|+|++||||||+++.|++.++. .++|.+.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~-----~~~d~d~~ 50 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGF-----TYLDTGAM 50 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCC-----ceecCCCe
Confidence 456889999999999999999999997742 26676655
No 162
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.48 E-value=2.5e-07 Score=88.49 Aligned_cols=116 Identities=13% Similarity=0.033 Sum_probs=71.4
Q ss_pred EEeecceeecC--Cc-ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCc-cEEEEcCeecccccc---cCCCCCccc
Q 023675 83 LWHKNSVDKRD--RQ-QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGK-LTYILDGDNCRHGLN---RDLSFKAED 155 (279)
Q Consensus 83 ~~~~~~~~~~~--~~-sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~-G~i~ldgd~i~~~~~---~~~~~~~~~ 155 (279)
+.+++++.|.. +. +..+++|++++|+|+||||||||++.+++.+ .+.. ..+++.+++....+. ..+++.
T Consensus 259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~-~~~G~~vi~~~~ee~~~~l~~~~~~~g~~--- 334 (525)
T 1tf7_A 259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENA-CANKERAILFAYEESRAQLLRNAYSWGMD--- 334 (525)
T ss_dssp CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHH-HTTTCCEEEEESSSCHHHHHHHHHTTSCC---
T ss_pred ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH-HhCCCCEEEEEEeCCHHHHHHHHHHcCCC---
Confidence 44455544432 22 4588999999999999999999999999998 4432 235666543211000 000110
Q ss_pred HHHHHHHHHHHHHHHHhCCcchh----cccCChHHHHH-HHHHHhCCCCCccEEEEeCCccchhcc
Q 023675 156 RVENIRRIGEVAKLFADAGVICI----ACLISPYRKDR-DACRSMLPEGDFIEVFMDVPLQVCEAR 216 (279)
Q Consensus 156 ~~~~~~~v~~~~~~~~~~~~~~i----~~~~~~~~~~r-~~ar~l~~~~~~i~i~ld~p~~~l~~R 216 (279)
+. . +...+...+ ...++++++++ .+++.+..+|++ +++| |+..++..
T Consensus 335 -------~~---~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~l--lilD-p~~~Ld~~ 386 (525)
T 1tf7_A 335 -------FE---E-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPAR--IAID-SLSALARG 386 (525)
T ss_dssp -------HH---H-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSE--EEEE-CHHHHTSS
T ss_pred -------HH---H-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCE--EEEc-ChHHHHhh
Confidence 00 0 112222222 22367777777 667777788888 9999 99999877
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.48 E-value=4.6e-08 Score=81.67 Aligned_cols=27 Identities=37% Similarity=0.350 Sum_probs=23.4
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
++|++++|+||||||||||+++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999999999987
No 164
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.47 E-value=6.6e-08 Score=83.27 Aligned_cols=37 Identities=22% Similarity=0.263 Sum_probs=26.7
Q ss_pred ecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 91 KRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 91 ~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
..++.||++++|++++|+|+||||||||+++|++.+.
T Consensus 14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3456689999999999999999999999999999873
No 165
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.46 E-value=5.7e-08 Score=85.24 Aligned_cols=37 Identities=30% Similarity=0.267 Sum_probs=23.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++|+|+||||||||+|+|++.+ .|.+|.+.++|.++
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~-~~~~G~i~~~g~~i 40 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ-VSRKASSWNREEKI 40 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-C------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCC-CCCCCccccCCccc
Confidence 68999999999999999999999 89999999999766
No 166
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.46 E-value=2.3e-07 Score=82.08 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=35.1
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~ 143 (279)
..+|.+++|+|+|||||||+++.|+..+. .+.+++++|.++.
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~---~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDNDTFKQ 71 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECTHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEEechHhHH
Confidence 44688999999999999999999998762 3567899988763
No 167
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.45 E-value=1.5e-07 Score=89.91 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=69.9
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecccccccC----CCCCcccHHHH--HHH-----HHHHHH
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRHGLNRD----LSFKAEDRVEN--IRR-----IGEVAK 168 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~~~~~~----~~~~~~~~~~~--~~~-----v~~~~~ 168 (279)
..+.+|+|+|+|||||||+++.|++.++........|+.|+++..+... ..|.+...... +.. +..+..
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~ 112 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS 112 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999999987666566778888776443221 01222111111 111 111112
Q ss_pred HH-HhCCcchhcccCChHHHHHHHHHHhCCC--CCccEEEEeCC-ccchhccC
Q 023675 169 LF-ADAGVICIACLISPYRKDRDACRSMLPE--GDFIEVFMDVP-LQVCEARD 217 (279)
Q Consensus 169 ~~-~~~~~~~i~~~~~~~~~~r~~ar~l~~~--~~~i~i~ld~p-~~~l~~R~ 217 (279)
.+ ...+..++++........|+.++.++.. ..++.+.+.++ .+.+.+|.
T Consensus 113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri 165 (520)
T 2axn_A 113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNI 165 (520)
T ss_dssp HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHH
T ss_pred HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHH
Confidence 22 1456677777777667777666655542 23445666776 34444454
No 168
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.43 E-value=4.9e-08 Score=79.93 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=30.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCC---ccEEEEcCeecc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRG---KLTYILDGDNCR 142 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~---~G~i~ldgd~i~ 142 (279)
++++|+|+||||||||+++|.+++ .+. .|.|.+|+.++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~-~~~g~~~G~I~~dg~~i~ 44 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL-RERGLRVAVVKRHAHGDF 44 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH-HHTTCCEEEEEC------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-hhcCCceEEEEEcCcccc
Confidence 589999999999999999999999 666 899999998764
No 169
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.41 E-value=3.6e-07 Score=76.43 Aligned_cols=40 Identities=28% Similarity=0.268 Sum_probs=34.5
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
-+++|++++|+|+|||||||+++.|++ ..+.+.++++.+.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTEG 55 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESSC
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECCC
Confidence 478899999999999999999999999 3456788888764
No 170
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.40 E-value=2.6e-07 Score=76.33 Aligned_cols=24 Identities=42% Similarity=0.558 Sum_probs=22.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHccc
Q 023675 104 VIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
+|+|+|++||||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999999874
No 171
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.38 E-value=3.6e-07 Score=72.86 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCcc--EEEEcCeecc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNCR 142 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G--~i~ldgd~i~ 142 (279)
+|+.++|+|++|||||||+++|++.+. + .| .+++++.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~-~-~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL-E-AGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH-T-TTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH-h-cCCcEEEEcHHHhh
Confidence 899999999999999999999999984 4 46 8888876653
No 172
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.38 E-value=5.1e-08 Score=80.05 Aligned_cols=23 Identities=43% Similarity=0.563 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+|+|+|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 173
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.37 E-value=6.1e-08 Score=80.60 Aligned_cols=37 Identities=30% Similarity=0.329 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
|++++|+|+||||||||++.|++++ . .+| +.++|.+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~-~-~~G-i~~~g~~~ 37 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVL-K-SSG-VPVDGFYT 37 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH-H-HTT-CCCEEEEC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhc-c-cCC-EEEcCEec
Confidence 6789999999999999999999999 5 678 88888655
No 174
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.36 E-value=1.8e-07 Score=85.36 Aligned_cols=45 Identities=18% Similarity=0.013 Sum_probs=38.9
Q ss_pred cCCcceeccC--CeEEEEEcCCCChHHHHHHHHHHccccCCc----cEEEEc
Q 023675 92 RDRQQLLQQK--GCVIWITGLSGSGKSTLACALSQALHWRGK----LTYILD 137 (279)
Q Consensus 92 ~~~~sl~i~~--g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~----G~i~ld 137 (279)
....++.+.+ |+.++|+|+||||||||+++|++++ .+.. |.++++
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~-~~~~~~e~G~i~i~ 208 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVF-NTTSAWEYGREFVF 208 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHT-TCEEECCTTHHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHh-CCCcchhhHHHHHH
Confidence 3456889999 9999999999999999999999999 7777 777664
No 175
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.36 E-value=7.2e-07 Score=81.02 Aligned_cols=46 Identities=22% Similarity=0.168 Sum_probs=37.9
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccc-cCCc----cE-EEEcCeec
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALH-WRGK----LT-YILDGDNC 141 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~-~~~~----G~-i~ldgd~i 141 (279)
...+++|+++.|+|+||||||||++.|++.+. .|.. |. +++++.+.
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~ 176 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT 176 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC
Confidence 56789999999999999999999999999873 2223 56 89998654
No 176
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.36 E-value=1.1e-07 Score=80.34 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++..|+|+|++||||||+++.|+..++. .+++.+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~-----~~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQL-----AHISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCC-----EECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----ceecHHHH
Confidence 4678999999999999999999998843 36675543
No 177
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.36 E-value=1.1e-07 Score=84.55 Aligned_cols=45 Identities=29% Similarity=0.248 Sum_probs=31.9
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE---cCeecc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR 142 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l---dgd~i~ 142 (279)
|...+|++++|+|+||||||||+|+|++++ .|..|.|.+ +|.++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~-~~~~G~i~~~~~~g~~~t 211 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTT 211 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTC-CCC-------------CC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccc-cccccceecccCCCCCce
Confidence 567789999999999999999999999999 899999999 787664
No 178
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.35 E-value=1.5e-07 Score=79.02 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=27.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.|+|+|++||||||+++.|+..++.+ +++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHH
Confidence 48899999999999999999887433 6776554
No 179
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.33 E-value=1.5e-06 Score=72.91 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=31.1
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l 136 (279)
-+++|++++|+|+||||||||++.|++.+ .+..|.+.+
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~-~~~~~~v~~ 56 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKG-LRDGDPCIY 56 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHH-HHHTCCEEE
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHH-HHCCCeEEE
Confidence 57789999999999999999999999887 444444443
No 180
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.33 E-value=9.3e-07 Score=76.58 Aligned_cols=34 Identities=26% Similarity=0.424 Sum_probs=28.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+++|+|+|||||||+++.|++.++.+ ++++|++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~-----~i~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWP-----VVALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCC-----EEECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCe-----EEeccHH
Confidence 478999999999999999999988433 6777765
No 181
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.33 E-value=1.1e-07 Score=79.92 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=26.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.|+|+|++||||||+++.|+..++.+ +++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHH
Confidence 58899999999999999999887433 6766554
No 182
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.32 E-value=2.9e-07 Score=77.70 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+|..|+|+|++||||||+++.|+..+.. .+++.+++
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~l 39 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGL-----AHLSTGDM 39 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCc-----eEEehhHH
Confidence 4568999999999999999999998843 36666544
No 183
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.30 E-value=2.2e-07 Score=88.62 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=40.6
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
++.+++|+.++|+|+|||||||++++|++++ .|+.|.+.+++.+
T Consensus 254 ~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i-~~~~giitied~~ 297 (511)
T 2oap_1 254 WLAIEHKFSAIVVGETASGKTTTLNAIMMFI-PPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHTTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEESSC
T ss_pred HHHHhCCCEEEEECCCCCCHHHHHHHHHhhC-CCCCCEEEEcCcc
Confidence 6678899999999999999999999999999 8899999998764
No 184
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.30 E-value=3.8e-07 Score=75.94 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
...+|+|+|++||||||+++.|+..++ ..++|.|++
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg-----~~vid~D~~ 46 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG-----AHVVNVDRI 46 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC-----CEEEECcHH
Confidence 346899999999999999999999864 348888776
No 185
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.28 E-value=3.3e-07 Score=76.61 Aligned_cols=40 Identities=40% Similarity=0.386 Sum_probs=30.4
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++|++++|+|+||||||||+++|++++ .+ ...+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~-~~--~i~~v~~d~~ 42 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL-GE--RVALLPMDHY 42 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH-GG--GEEEEEGGGC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh-CC--CeEEEecCcc
Confidence 4689999999999999999999999998 33 1335555543
No 186
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.27 E-value=2.7e-07 Score=79.45 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=30.1
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++..|+|+|++||||||+++.|+..++ ..+++.+++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g-----~~~is~~~~ 63 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC-----YCHLSTGDL 63 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC-----CEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC-----CeEEecHHH
Confidence 4678999999999999999999998874 336665543
No 187
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.25 E-value=3.5e-06 Score=74.69 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=42.6
Q ss_pred EEeecceeecC---CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 83 LWHKNSVDKRD---RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 83 ~~~~~~~~~~~---~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.++++.+.|.. ..++. +|++++++|++|+||||++..|++.+ .+..|.+.+.+.+.+
T Consensus 78 ~~~~l~~~~~~~~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~-~~~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 78 VYEALKEALGGEARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHTTSSCCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHH-HHTTCCEEEEECCSS
T ss_pred HHHHHHHHHCCCCceeecC--CCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEecCCcc
Confidence 33444455532 23555 89999999999999999999999999 566777777666554
No 188
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.25 E-value=3.5e-06 Score=73.70 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=26.4
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+++|++++|+|+||||||||++.+++.+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999999977
No 189
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.25 E-value=1.6e-06 Score=73.44 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=26.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.|+|+|++||||||+++.|+..+.. .+++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHH
Confidence 5899999999999999999998732 35666443
No 190
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.25 E-value=1.6e-07 Score=78.05 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=32.3
Q ss_pred eEEeecceeecCCc--ceeccCCeEEEEEcCCCChHHHHHHHHHHccc----cCCccEEE
Q 023675 82 ILWHKNSVDKRDRQ--QLLQQKGCVIWITGLSGSGKSTLACALSQALH----WRGKLTYI 135 (279)
Q Consensus 82 i~~~~~~~~~~~~~--sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~----~~~~G~i~ 135 (279)
++++++++.|.... +|.+.+|..++|+|+||||||||++.|.+... .|..|.+.
T Consensus 4 l~~~~~~~~~~~~~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~ 63 (210)
T 1pui_A 4 LNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQ 63 (210)
T ss_dssp -------CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------C
T ss_pred hhhhhhhheeecCCHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccce
Confidence 56677777774211 58999999999999999999999999998752 34455544
No 191
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.24 E-value=4.5e-07 Score=75.61 Aligned_cols=40 Identities=38% Similarity=0.341 Sum_probs=32.9
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg 138 (279)
..++|.+++|+|+|||||||+++.|++.+ .+..|.+.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~-~~~~~~v~~~~ 57 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTL-REQGISVCVFH 57 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHH-HHTTCCEEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHH-hhcCCeEEEec
Confidence 45679999999999999999999999998 55566665543
No 192
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.24 E-value=1.5e-06 Score=76.26 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=36.7
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.++.+++| ++|+||||||||||+++|++.+ .+ +.+.++|.++.
T Consensus 39 ~~l~~~~G--vlL~Gp~GtGKTtLakala~~~-~~--~~i~i~g~~l~ 81 (274)
T 2x8a_A 39 LGLVTPAG--VLLAGPPGCGKTLLAKAVANES-GL--NFISVKGPELL 81 (274)
T ss_dssp TTCCCCSE--EEEESSTTSCHHHHHHHHHHHT-TC--EEEEEETTTTC
T ss_pred cCCCCCCe--EEEECCCCCcHHHHHHHHHHHc-CC--CEEEEEcHHHH
Confidence 36677788 9999999999999999999988 44 68999987764
No 193
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.23 E-value=4.4e-07 Score=80.78 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=34.0
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE---cCeecc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNCR 142 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l---dgd~i~ 142 (279)
+...+|++++|+|+||||||||+|+|. .+ .+..|.|.+ +|.++.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~-~~~~G~i~~~~~~G~~~t 206 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GE-ELRTQEVSEKTERGRHTT 206 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SC-CCCCSCC---------CC
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-Hh-hCcccccccccCCCCCce
Confidence 456789999999999999999999999 77 889999999 787653
No 194
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.20 E-value=1.8e-07 Score=79.87 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+..|+|+|++||||||+++.|+..+.. .+++.+++
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~l 50 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV-----CHLATGDM 50 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----ceecHHHH
Confidence 4578999999999999999999998843 36676543
No 195
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.20 E-value=2.1e-07 Score=83.04 Aligned_cols=44 Identities=25% Similarity=0.205 Sum_probs=26.8
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE---cCeec
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL---DGDNC 141 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l---dgd~i 141 (279)
+.+.+|++++|+|+||+|||||+|+|.+.+ .+..|.|.+ +|..+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~G~I~~~~~~G~~t 214 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHT 214 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccc-cccccceeeecCCCccc
Confidence 677899999999999999999999999998 788999988 66554
No 196
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.20 E-value=4e-07 Score=80.32 Aligned_cols=47 Identities=23% Similarity=0.104 Sum_probs=38.6
Q ss_pred cCCcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCcc--EEEEcCe
Q 023675 92 RDRQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGD 139 (279)
Q Consensus 92 ~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G--~i~ldgd 139 (279)
.++.++.+++|++++|+|+||||||||++.|++.+ .+.+| .++++++
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~-~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW-GTAMGKKVGLAMLE 73 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH-HHTSCCCEEEEESS
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH-HHHcCCeEEEEeCc
Confidence 34557889999999999999999999999999998 66656 4455554
No 197
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.19 E-value=9.9e-07 Score=74.32 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=29.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++|..|+|+|++||||||+++.|+..+.. .+++.+++
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~~ 38 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHA-----AHLATGDM 38 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEehhHH
Confidence 35778999999999999999999998843 36776554
No 198
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.17 E-value=1.3e-06 Score=74.11 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=36.2
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHc--cccC-----CccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQA--LHWR-----GKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~--l~~~-----~~G~i~ldgd~ 140 (279)
-+++|++++|+|+||||||||++.|++. + .+ +.|.+++++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~-~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQL-PIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSS
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhC-chhcCCCCCeEEEEECCC
Confidence 4678999999999999999999999994 4 33 67899999875
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.17 E-value=1.5e-06 Score=72.57 Aligned_cols=35 Identities=29% Similarity=0.325 Sum_probs=27.2
Q ss_pred CCcceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 93 DRQQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 93 ~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
.+.++...+|++++|+||||||||||++.|.+.+.
T Consensus 10 ~~~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 10 GRENLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ------CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred ccccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34567777899999999999999999999999873
No 200
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.17 E-value=1.5e-06 Score=70.72 Aligned_cols=43 Identities=26% Similarity=0.261 Sum_probs=34.2
Q ss_pred eEEeecceeec-CCcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 82 ILWHKNSVDKR-DRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 82 i~~~~~~~~~~-~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
|++++.. .|. ...++.+.+| +.+|+|+||||||||+++|...+
T Consensus 7 l~i~nf~-~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 7 LELKGFK-SYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEESBG-GGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred EEEeCeE-eecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence 4555542 333 4567888888 99999999999999999999988
No 201
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.17 E-value=2.9e-06 Score=86.12 Aligned_cols=29 Identities=28% Similarity=0.164 Sum_probs=27.0
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHH
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACAL 122 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L 122 (279)
+.+|.+.+|++++|+|||||||||+++.+
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHH
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHH
Confidence 44888899999999999999999999999
No 202
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.16 E-value=2.7e-07 Score=89.81 Aligned_cols=42 Identities=26% Similarity=0.090 Sum_probs=31.5
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCeec
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNC 141 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd~i 141 (279)
++.++. ++|+|+||||||||+++|+|++ .| ++|.|.++|.++
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~-~P~~sG~vt~~g~~i 84 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVA-LPRGSGIVTRCPLVL 84 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEE
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCC-CCCCCCeEEEcCEEE
Confidence 345544 9999999999999999999998 66 899999999885
No 203
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.13 E-value=2.2e-06 Score=86.78 Aligned_cols=32 Identities=25% Similarity=0.269 Sum_probs=29.0
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
+.+|.+++|++++|+|||||||||+++.+++.
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 44888999999999999999999999998764
No 204
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.13 E-value=7.5e-06 Score=71.94 Aligned_cols=36 Identities=44% Similarity=0.638 Sum_probs=28.6
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+++.+|+|+|++||||||+++.|+. ++ ..+++.|++
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-lg-----~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-LG-----AYIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-HT-----CEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CC-----CcEEehhHH
Confidence 3467899999999999999999995 42 346777665
No 205
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.13 E-value=9.2e-07 Score=75.32 Aligned_cols=42 Identities=21% Similarity=0.172 Sum_probs=35.6
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+...++|++++|.|++||||||++++|++. .|.+.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-----cCCeEEEecCH
Confidence 3556789999999999999999999999987 46778887765
No 206
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.12 E-value=1.8e-06 Score=71.98 Aligned_cols=41 Identities=32% Similarity=0.392 Sum_probs=34.2
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
-.+++|.+++|+|+|||||||+++.|++.+. +..+++.|++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 3677899999999999999999999999872 3457777765
No 207
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.12 E-value=1.1e-06 Score=87.51 Aligned_cols=33 Identities=21% Similarity=0.148 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEE
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTY 134 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i 134 (279)
|++++|+|||||||||+++.|++....+..|.+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~ 608 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGSF 608 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCC
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCce
Confidence 999999999999999999999998632445543
No 208
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.11 E-value=6.2e-07 Score=73.10 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=29.3
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
++.+++|+.++|+||||+|||||+++|++.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 6778889999999999999999999999998
No 209
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.11 E-value=2.5e-07 Score=79.55 Aligned_cols=37 Identities=22% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHH---HccccCCccEEEEcC
Q 023675 101 KGCVIWITGLSGSGKSTLACALS---QALHWRGKLTYILDG 138 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~---~~l~~~~~G~i~ldg 138 (279)
++++++|+|+|||||||++++|+ +.. .++.|.+.+++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~-~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQ-HLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCC-CEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCe-EecHHHHHHHH
Confidence 47999999999999999999999 655 45555555544
No 210
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.11 E-value=8e-07 Score=82.63 Aligned_cols=34 Identities=29% Similarity=0.269 Sum_probs=30.4
Q ss_pred CCcceeccCCeE--EEEEcCCCChHHHHHHHHHHcc
Q 023675 93 DRQQLLQQKGCV--IWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 93 ~~~sl~i~~g~~--i~lvG~sGsGKSTl~~~L~~~l 126 (279)
++.+|.+++|++ ++|+|+||||||||+++|+|..
T Consensus 31 ~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 31 QLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred CCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 355899999999 9999999999999999999984
No 211
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.10 E-value=1.2e-05 Score=72.55 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=30.4
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++.+++|+||+|||||||+..|++.++ ..+|+.|..
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC-----CcEEccccc
Confidence 3567999999999999999999999984 235777665
No 212
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.09 E-value=1.5e-06 Score=79.04 Aligned_cols=39 Identities=28% Similarity=0.107 Sum_probs=30.1
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEc-Ce
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILD-GD 139 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ld-gd 139 (279)
.+|++++|+|+||+|||||+|+|.+.+ . +..|.|.++ |.
T Consensus 213 ~~G~~~~lvG~sG~GKSTLln~L~g~~-~~~~~G~I~~~~G~ 253 (358)
T 2rcn_A 213 LTGRISIFAGQSGVGKSSLLNALLGLQ-NEILTNDVSNVSGL 253 (358)
T ss_dssp HTTSEEEEECCTTSSHHHHHHHHHCCS-SCCCCC--------
T ss_pred cCCCEEEEECCCCccHHHHHHHHhccc-cccccCCccccCCC
Confidence 479999999999999999999999998 7 889999876 53
No 213
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.09 E-value=1.1e-06 Score=75.05 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=23.1
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
..+|.+|+|.|++||||||+++.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999884
No 214
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.06 E-value=5.1e-06 Score=69.81 Aligned_cols=34 Identities=29% Similarity=0.423 Sum_probs=27.2
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEc-Ceecc
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILD-GDNCR 142 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld-gd~i~ 142 (279)
+|+|+||+||||+|.++.|+..++.+ +|. ||-+|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~-----~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV-----HISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe-----EEcHHHHHH
Confidence 68899999999999999999998533 666 44344
No 215
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.04 E-value=2e-06 Score=72.86 Aligned_cols=37 Identities=22% Similarity=0.280 Sum_probs=28.7
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++.+|+|+|++||||||+++.|+..++. .+++.+++
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~~ 41 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFEL-----KHLSSGDL 41 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSS-----EEEEHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCC-----eEEechHH
Confidence 35678999999999999999999988743 36665543
No 216
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.02 E-value=1.4e-06 Score=77.98 Aligned_cols=41 Identities=24% Similarity=0.196 Sum_probs=35.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccc-------cCCccEEEEcCeecc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALH-------WRGKLTYILDGDNCR 142 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~-------~~~~G~i~ldgd~i~ 142 (279)
=++++|+|+|||||||+++.|.+... .++.|.|.+||..+.
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~ 51 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIG 51 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEEC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHh
Confidence 46899999999999999999999852 467899999998774
No 217
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.00 E-value=1.9e-06 Score=70.27 Aligned_cols=37 Identities=30% Similarity=0.400 Sum_probs=29.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+|.+|+|+|++||||||+++.|+..+.. .+++.+++
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~-----~~i~~d~~ 38 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGF-----KKLSTGDI 38 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTC-----EEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----eEecHHHH
Confidence 46889999999999999999999987742 36776543
No 218
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.99 E-value=4.5e-06 Score=71.77 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=36.2
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.++.+++| ++|+||||||||||+++|++.+. .|.+.+++.++.
T Consensus 44 ~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---~~~i~~~~~~~~ 86 (254)
T 1ixz_A 44 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 86 (254)
T ss_dssp TTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred cCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC---CCEEEeeHHHHH
Confidence 36677777 89999999999999999999873 678888887653
No 219
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.98 E-value=2.3e-06 Score=71.17 Aligned_cols=33 Identities=33% Similarity=0.490 Sum_probs=28.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+++|+|+|||||||+++.|++ +. ..++|+|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg-----~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LG-----VPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TT-----CCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CC-----CcccchHHH
Confidence 4799999999999999999998 53 448888876
No 220
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.98 E-value=5.1e-06 Score=78.25 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=34.2
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeeccc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCRH 143 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~~ 143 (279)
..+.+|+|+|++||||||+++.|++.+..+......++.++++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~ 80 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRR 80 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhh
Confidence 45678999999999999999999998866655566666555543
No 221
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.97 E-value=8.1e-06 Score=75.40 Aligned_cols=42 Identities=19% Similarity=0.170 Sum_probs=33.5
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHH--HccccC-----CccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALS--QALHWR-----GKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~--~~l~~~-----~~G~i~ldgd~ 140 (279)
-+++|+++.|+|+||||||||++.|+ ..+ .+ +.+.+++++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~-p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQI-PLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTS-CGGGTCCSSEEEEEESSS
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhcc-CcccCCCCCcEEEEeCCC
Confidence 36899999999999999999999654 444 33 35589999875
No 222
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.97 E-value=6.6e-06 Score=70.63 Aligned_cols=30 Identities=37% Similarity=0.502 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCC
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRG 130 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~ 130 (279)
+|.+|+|.|++||||||+++.|+..+...+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~ 55 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNG 55 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 588999999999999999999999985443
No 223
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.96 E-value=5.9e-06 Score=69.77 Aligned_cols=36 Identities=31% Similarity=0.356 Sum_probs=28.6
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI 135 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ 135 (279)
.+|.+|+|.|++||||||+++.|+..|...+...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~ 39 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQL 39 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccc
Confidence 368899999999999999999999998544333333
No 224
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.95 E-value=6e-06 Score=72.07 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=36.3
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.++.+++| ++|+||||||||||+++|++.+. .|.+.+++.++.
T Consensus 68 ~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---~~~i~~~~~~~~ 110 (278)
T 1iy2_A 68 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 110 (278)
T ss_dssp TTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT---CCEEEEEHHHHH
T ss_pred cCCCCCCe--EEEECCCcChHHHHHHHHHHHcC---CCEEEecHHHHH
Confidence 36777788 89999999999999999999873 678888887653
No 225
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.95 E-value=4.4e-06 Score=74.98 Aligned_cols=47 Identities=13% Similarity=0.259 Sum_probs=38.6
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
..+|..++|++++++|++|+||||++..|++.+ .+..+.|.+.+-|+
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l-~~~g~kVllid~D~ 143 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYY-AELGYKVLIAAADT 143 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHH-HHTTCCEEEEECCC
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHH-HHCCCeEEEEeCCC
Confidence 346778899999999999999999999999999 55667776655444
No 226
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.87 E-value=8.1e-06 Score=73.23 Aligned_cols=33 Identities=27% Similarity=0.224 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcccc-CCccE
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHW-RGKLT 133 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~ 133 (279)
.+.+++|+|+|||||||++++|.+++.. ++.|.
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 3459999999999999999999999842 34454
No 227
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.86 E-value=1.9e-05 Score=66.04 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=26.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.|+|+|++||||||+++.|+..++.+ +++.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~-----~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP-----QISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC-----EEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHH
Confidence 47999999999999999999987433 5665443
No 228
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.86 E-value=0.00017 Score=64.82 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=34.4
Q ss_pred ccCChHHHHH-------HHHHHhCCCCCccEEEEeCCccchhccChhhHHHHH
Q 023675 180 CLISPYRKDR-------DACRSMLPEGDFIEVFMDVPLQVCEARDPKGLYKLA 225 (279)
Q Consensus 180 ~~~~~~~~~r-------~~ar~l~~~~~~i~i~ld~p~~~l~~R~~~~l~~~~ 225 (279)
..+|++++++ .++++++.+|++ ++||||+..++......+++.+
T Consensus 247 ~~lS~G~~~~~~la~~l~~a~~l~~~p~~--lllDEp~~~LD~~~~~~l~~~l 297 (339)
T 3qkt_A 247 TFLSGGERIALGLAFRLAMSLYLAGEISL--LILDEPTPYLDEERRRKLITIM 297 (339)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHTTTTTCE--EEEECCCTTCCHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHhcCCCCE--EEEECCCCCCCHHHHHHHHHHH
Confidence 4578888873 566777888888 9999999999998877766544
No 229
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.85 E-value=1e-05 Score=75.29 Aligned_cols=45 Identities=24% Similarity=0.192 Sum_probs=36.6
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++++|+ .+|.....+.+.+|++++|+|+||||||||+++|...+
T Consensus 6 ~l~~~~~-~~~~~~~~~~~~~~~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 6 GLELSNF-KSYRGVTKVGFGESNFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp EEEEESC-SSCCSEEEEECTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEeCE-EEECCceeEEecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 4666776 46654334677789999999999999999999999988
No 230
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.84 E-value=7.3e-06 Score=67.53 Aligned_cols=35 Identities=43% Similarity=0.357 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++.+|+|+|++||||||+++.|++. |..++|.|++
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~------g~~~id~d~~ 41 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW------GYPVLDLDAL 41 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT------TCCEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC------CCEEEcccHH
Confidence 4578999999999999999999996 3448888876
No 231
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.82 E-value=1.3e-05 Score=65.75 Aligned_cols=40 Identities=23% Similarity=0.305 Sum_probs=32.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcccc----C------CccEEEEcCeecc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHW----R------GKLTYILDGDNCR 142 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~----~------~~G~i~ldgd~i~ 142 (279)
-.++|+|+||||||||++.|.+.... | ..|.+.++|.++.
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 47899999999999999999998632 1 4678888887653
No 232
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.78 E-value=1.8e-05 Score=72.89 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=35.1
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHH------------ccccCCccEEEEcC
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQ------------ALHWRGKLTYILDG 138 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~------------~l~~~~~G~i~ldg 138 (279)
++.+|..++|+|+||+|||||+|+|.+ .. .|..|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi-~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATI-DPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCC-CTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceee-cceeeeeeeCC
Confidence 556799999999999999999999999 33 68889988876
No 233
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.78 E-value=0.00012 Score=61.39 Aligned_cols=32 Identities=25% Similarity=0.279 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEE
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTY 134 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i 134 (279)
|.+|+|=|..||||||+++.|...| ..+...+
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L-~~~~~v~ 33 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRL-VKDYDVI 33 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHH-TTTSCEE
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HCCCCEE
Confidence 6789999999999999999999998 4443333
No 234
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.78 E-value=7.6e-06 Score=67.80 Aligned_cols=32 Identities=44% Similarity=0.607 Sum_probs=26.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+|+|+|+|||||||+++.|++ ++ ..+++.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~d~~ 34 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDADKL 34 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT-----CEEEEHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC-----CEEEEccHH
Confidence 689999999999999999999 63 446777665
No 235
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.78 E-value=9.6e-06 Score=68.01 Aligned_cols=35 Identities=37% Similarity=0.471 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++.+|+|+|++||||||+++.|++ +. ..++|.|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg-----~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LG-----INVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TT-----CEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cC-----CEEEEccHH
Confidence 467899999999999999999998 53 347887665
No 236
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.76 E-value=1.6e-05 Score=67.33 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=34.6
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
-+++|+++.|+|+|||||||++..++......+.+.++++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 4678999999999999999997777655435667788888764
No 237
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.75 E-value=2.5e-05 Score=66.72 Aligned_cols=35 Identities=17% Similarity=0.239 Sum_probs=27.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
...++|+|++||||||+++.|+..+..+ +++..++
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~-----~is~gdl 42 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIP-----QISTGDM 42 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCC-----EECHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCC-----eeechHH
Confidence 3468999999999999999999988544 6775443
No 238
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.74 E-value=1.9e-05 Score=67.91 Aligned_cols=44 Identities=27% Similarity=0.309 Sum_probs=34.4
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccC-----CccEEEEcCeeccc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWR-----GKLTYILDGDNCRH 143 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-----~~G~i~ldgd~i~~ 143 (279)
.+..+|+|+|++||||||+++.|+..+..+ +...+.++.|++..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 345789999999999999999999987543 34566788888753
No 239
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.72 E-value=1.3e-05 Score=70.99 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=32.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCcc--EEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKL--TYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G--~i~ldgd~i 141 (279)
.+|++++|+|++|+||||++..|++.+ .+.+| ..+++.|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l-~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAIS-MLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHH-HHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH-HHhcCCEEEEEecCcc
Confidence 468999999999999999999999999 54344 455666543
No 240
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.72 E-value=1.4e-05 Score=73.30 Aligned_cols=32 Identities=31% Similarity=0.196 Sum_probs=29.9
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++.+++|++++|+||||||||||+++|++.+
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 37889999999999999999999999999976
No 241
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.71 E-value=1.7e-05 Score=64.53 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
+|.+|+|+|++||||||+++.|+..+...+....+++.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~ 40 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFG 40 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehH
Confidence 367899999999999999999999874221113356633
No 242
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.69 E-value=0.00012 Score=68.13 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEE-EEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTY-ILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i-~ldgd~i 141 (279)
+|.+++++|++||||||++..|+..+. +..+.+ +++.|..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-KRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-HTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCeEEEEecCcc
Confidence 589999999999999999999999994 444455 4555543
No 243
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.69 E-value=1.2e-05 Score=71.47 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=19.0
Q ss_pred EEEEcCCCChHHHHHHHHHHc-cccCCccEEEEcCeec
Q 023675 105 IWITGLSGSGKSTLACALSQA-LHWRGKLTYILDGDNC 141 (279)
Q Consensus 105 i~lvG~sGsGKSTl~~~L~~~-l~~~~~G~i~ldgd~i 141 (279)
++|+|+||+|||||++.|.+. + .+.+| +.++|.++
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~-~~~~g-i~~~g~~~ 56 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDL-YPERV-ISGAAEKI 56 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC------------------
T ss_pred EEEECCCCCCHHHHHHHHhCCCc-cCCCC-cccCCccc
Confidence 399999999999999999987 6 56677 65555443
No 244
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.67 E-value=2.1e-05 Score=69.48 Aligned_cols=28 Identities=29% Similarity=0.369 Sum_probs=26.1
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
.++.+|+|+|++|||||||++.|.+++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4689999999999999999999999994
No 245
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.67 E-value=2.6e-05 Score=64.30 Aligned_cols=27 Identities=30% Similarity=0.554 Sum_probs=25.0
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.+|.+|+|+|++||||||+++.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999987
No 246
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.65 E-value=0.00021 Score=66.39 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=34.4
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++. +|++++++|++||||||++..|++.+ .+..+.+.+.+-|+
T Consensus 94 ~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l-~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 94 VLK--DRNLWFLVGLQGSGKTTTAAKLALYY-KGKGRRPLLVAADT 136 (425)
T ss_dssp CCC--SSEEEEEECCTTSSHHHHHHHHHHHH-HTTTCCEEEEECCS
T ss_pred cCC--CCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCeEEEeeccc
Confidence 555 88999999999999999999999999 55556666544443
No 247
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.64 E-value=2.3e-05 Score=71.05 Aligned_cols=40 Identities=18% Similarity=0.150 Sum_probs=32.5
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
+++.+++|+|++|||||||++.|.+.+ .+..|.+.+-+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~-~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML-TERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH-HHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh-hhcCCeEEEEeec
Confidence 458899999999999999999999988 5556666555543
No 248
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=0.00011 Score=64.98 Aligned_cols=44 Identities=23% Similarity=0.228 Sum_probs=34.0
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEE-EcCee
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYI-LDGDN 140 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~-ldgd~ 140 (279)
.++..+ |.+++++|++|+||||++..|++.+. +..+.+. +|.|.
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-KKGFKVGLVGADV 136 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-HTTCCEEEEECCC
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEecCC
Confidence 455555 99999999999999999999999994 4445555 44443
No 249
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.63 E-value=3.3e-05 Score=63.53 Aligned_cols=39 Identities=23% Similarity=0.290 Sum_probs=30.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccc----cC------CccEEEEcCeec
Q 023675 103 CVIWITGLSGSGKSTLACALSQALH----WR------GKLTYILDGDNC 141 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~----~~------~~G~i~ldgd~i 141 (279)
-.++|+|++|+|||||++.|.+... .| ..|.+.++|.++
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 3689999999999999999999742 12 256788888755
No 250
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.59 E-value=2.9e-05 Score=72.05 Aligned_cols=42 Identities=21% Similarity=0.193 Sum_probs=29.9
Q ss_pred CCeEEeecceeecCCc-----ceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 80 TNILWHKNSVDKRDRQ-----QLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~-----sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
+.+.++++.+.|..+. +|. ++|+|+||+|||||++.|.+...
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~------I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFT------LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEE------EEEECCTTSSHHHHHHHHTTCCC
T ss_pred CcEEEEecceeECCEEEecCCCEE------EEEECCCCCcHHHHHHHHhCCCC
Confidence 4577888888886432 343 49999999999999999999873
No 251
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.56 E-value=1.9e-05 Score=73.34 Aligned_cols=44 Identities=18% Similarity=0.091 Sum_probs=36.0
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccc----------cCCccEEEEcC
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALH----------WRGKLTYILDG 138 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~----------~~~~G~i~ldg 138 (279)
.+|+++.++.++|+|+||||||||+++|++... .|..|.+.+++
T Consensus 150 i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~ 203 (416)
T 1udx_A 150 LRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE 203 (416)
T ss_dssp EEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS
T ss_pred eeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC
Confidence 388999999999999999999999999999821 44556666654
No 252
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.55 E-value=3.7e-05 Score=69.35 Aligned_cols=45 Identities=24% Similarity=0.189 Sum_probs=35.4
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
.++...++.+++|+|++|+||||+++.|++.+ .+..+.+.+-+.+
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~-~~~~~~v~v~~~d 93 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL-IREGLKVAVIAVD 93 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHH-HHTTCCEEEEEEC
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHH-HhcCCeEEEEeec
Confidence 36778899999999999999999999999988 4444555443333
No 253
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.55 E-value=6.2e-05 Score=77.20 Aligned_cols=46 Identities=17% Similarity=0.089 Sum_probs=33.5
Q ss_pred CCeEEee-----cceee-c-----CCcceeccC-------CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 80 TNILWHK-----NSVDK-R-----DRQQLLQQK-------GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 80 ~~i~~~~-----~~~~~-~-----~~~sl~i~~-------g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
..+++++ +.+.| . ++.+|.+.+ |++++|+|||||||||+++.+ +++
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHH
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHH
Confidence 3588888 77666 2 233777776 899999999999999999999 775
No 254
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.52 E-value=3.3e-05 Score=69.33 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=26.3
Q ss_pred EEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 105 IWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 105 i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+.|+||+|+||||++++|++.+..++.|.+.++|.++
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~ 75 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQF 75 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceee
Confidence 8999999999999999999954378889998888654
No 255
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.51 E-value=4.5e-05 Score=74.02 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=40.0
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
++.+.+|+.+.|+||||+||||++++|++.+.....|.+.+++....
T Consensus 54 ~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~ 100 (604)
T 3k1j_A 54 KTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED 100 (604)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTC
T ss_pred cccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccc
Confidence 77888999999999999999999999999995444488888876653
No 256
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.51 E-value=3.5e-05 Score=70.61 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=41.7
Q ss_pred CCCeEEeecceeecCC--------------------cceeccCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 79 STNILWHKNSVDKRDR--------------------QQLLQQKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 79 ~~~i~~~~~~~~~~~~--------------------~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
.+.+.|+++++.|+.. ..+.+.+|+.++|+|++|+|||||++.|++...
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 4678899999988742 246688999999999999999999999999874
No 257
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.50 E-value=0.00021 Score=61.27 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=30.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+.-+.|+|+||+||||++++|++.+..+ .+.+++.++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~~~~~~ 82 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTISGSDFV 82 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCC---EEEECSCSST
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEeHHHHH
Confidence 3448899999999999999999988433 6778877764
No 258
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.48 E-value=2.8e-05 Score=68.71 Aligned_cols=42 Identities=31% Similarity=0.455 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
++.+|+|.|++||||||+++.|+..++..+....+++.|++.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 466899999999999999999999774222224578888875
No 259
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.47 E-value=7e-05 Score=68.04 Aligned_cols=43 Identities=26% Similarity=0.353 Sum_probs=35.6
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+++|+++.|+|++|||||||+..++..+...+...+++++...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s 100 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHA 100 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 6789999999999999999999999988434444678888754
No 260
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.46 E-value=5.3e-05 Score=75.81 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=28.7
Q ss_pred CcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 94 RQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 94 ~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+.+|. ++|++++|+|||||||||+++.|++..
T Consensus 600 disl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 600 PLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 44777 889999999999999999999999975
No 261
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.46 E-value=5.7e-05 Score=68.75 Aligned_cols=45 Identities=13% Similarity=0.007 Sum_probs=35.7
Q ss_pred cCChHHHHH-HHHHHhC---------CCCCccEEEEeCCccchhccChhhHHHHHhC
Q 023675 181 LISPYRKDR-DACRSML---------PEGDFIEVFMDVPLQVCEARDPKGLYKLARE 227 (279)
Q Consensus 181 ~~~~~~~~r-~~ar~l~---------~~~~~i~i~ld~p~~~l~~R~~~~l~~~~~~ 227 (279)
.+|+|++++ .++++++ .+|++ ++||+|++.++......+++.+..
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~i--LLLDEp~s~LD~~~~~~l~~~l~~ 319 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPV--LLLDDFTAELDPHRRQYLLDLAAS 319 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCE--EEECCGGGCCCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCE--EEEeCccccCCHHHHHHHHHHHHh
Confidence 467788877 7888888 67777 899999999998887777766543
No 262
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.44 E-value=0.00031 Score=65.50 Aligned_cols=42 Identities=29% Similarity=0.462 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
++.+++++|++|+||||++..|+..+...+.-..+++.|..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 578999999999999999999999986666667778888765
No 263
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.43 E-value=5.8e-05 Score=72.40 Aligned_cols=41 Identities=29% Similarity=0.437 Sum_probs=33.2
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg 138 (279)
++.+ +|..+.|+||||+||||++++|++.+ .+..+.+.+.+
T Consensus 103 ~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~~~ 143 (543)
T 3m6a_A 103 TKSL-KGPILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISLGG 143 (543)
T ss_dssp SSSC-CSCEEEEESSSSSSHHHHHHHHHHHH-TCEEEEECCCC
T ss_pred cccC-CCCEEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEecc
Confidence 4455 79999999999999999999999999 55555555444
No 264
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.40 E-value=0.00043 Score=61.96 Aligned_cols=35 Identities=31% Similarity=0.466 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+.+++|+||+|||||||++.|++.++ ..+++.|.+
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~-----~~iis~Ds~ 39 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP-----CELISVDSA 39 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEEECTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-----CcEEeccch
Confidence 35899999999999999999999884 335666654
No 265
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.39 E-value=0.00011 Score=60.11 Aligned_cols=24 Identities=46% Similarity=0.538 Sum_probs=22.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHccc
Q 023675 104 VIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
+|+|.|++||||||+++.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999883
No 266
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.38 E-value=0.00015 Score=72.71 Aligned_cols=44 Identities=18% Similarity=0.281 Sum_probs=36.2
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
++.+++|+.+.|+|+||||||||+++|++.+.. ..+.+++.++.
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~---~~i~v~~~~l~ 275 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEIM 275 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC---EEEEEEHHHHS
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC---cEEEEEchHhh
Confidence 456889999999999999999999999998743 35777776553
No 267
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.37 E-value=0.00012 Score=69.55 Aligned_cols=43 Identities=23% Similarity=0.273 Sum_probs=35.7
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.++.+++| +.|+||||+|||||+++|++.+. .+.+.+++.++.
T Consensus 59 lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~---~~~i~i~g~~~~ 101 (499)
T 2dhr_A 59 MGARIPKG--VLLVGPPGVGKTHLARAVAGEAR---VPFITASGSDFV 101 (499)
T ss_dssp TSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT---CCEEEEEGGGGT
T ss_pred ccCCCCce--EEEECCCCCCHHHHHHHHHHHhC---CCEEEEehhHHH
Confidence 35667777 89999999999999999999873 568888887663
No 268
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.36 E-value=7.5e-05 Score=67.00 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=23.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
+.++|+||||+|||||+++|++.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhC
Confidence 7899999999999999999999883
No 269
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.30 E-value=0.00017 Score=58.88 Aligned_cols=39 Identities=28% Similarity=0.203 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCC--ccEEEEcCee
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRG--KLTYILDGDN 140 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~--~G~i~ldgd~ 140 (279)
-.+++|+|+||||||||++.|.+.+...+ -|.+..+..+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 45899999999999999999999873221 3556655543
No 270
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.30 E-value=5.1e-05 Score=62.95 Aligned_cols=24 Identities=46% Similarity=0.635 Sum_probs=22.5
Q ss_pred EEEEEcCCCChHHHHHHHHHHccc
Q 023675 104 VIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
+|+|+|++||||||+++.|++.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999884
No 271
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.30 E-value=8.3e-05 Score=67.37 Aligned_cols=32 Identities=31% Similarity=0.401 Sum_probs=27.6
Q ss_pred ceeccCCeE--EEEEcCCCChHHHHHHHHHHccc
Q 023675 96 QLLQQKGCV--IWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 96 sl~i~~g~~--i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
++.+++|+. ++|+|++||||||++++|++.+.
T Consensus 16 ~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 16 DNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 455667776 99999999999999999999875
No 272
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=97.27 E-value=0.0011 Score=54.87 Aligned_cols=33 Identities=42% Similarity=0.482 Sum_probs=26.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l 136 (279)
+|+|=|.-||||||.++.|...|...+...++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 578889999999999999999986544444443
No 273
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.27 E-value=0.00016 Score=65.42 Aligned_cols=43 Identities=28% Similarity=0.324 Sum_probs=35.7
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
-+++|+++.|.|++|||||||+..++......+...++++.+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3678999999999999999999998876645666678888764
No 274
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.22 E-value=0.00013 Score=64.43 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=34.2
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+.+.++..+.|+||+|+||||++++|++.+. .+.+.+++.++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---~~~i~v~~~~l 85 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPEL 85 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---CEEEEECHHHH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC---CCEEEEEhHHH
Confidence 3467788999999999999999999999873 45677776544
No 275
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.22 E-value=0.00025 Score=58.47 Aligned_cols=23 Identities=48% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.|+|+||||||||||.+.|...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999998765
No 276
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.22 E-value=0.00023 Score=59.59 Aligned_cols=41 Identities=15% Similarity=0.090 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+..+.|+|++|+||||+++.++..+...+...++++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 57889999999999999999999988544455566766554
No 277
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.18 E-value=0.0002 Score=64.57 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=28.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+|+|+||+|||||||++.|+..++ ...++.|++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 5899999999999999999999883 346777765
No 278
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.18 E-value=0.00019 Score=57.61 Aligned_cols=27 Identities=33% Similarity=0.418 Sum_probs=23.2
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999999864
No 279
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.14 E-value=0.00028 Score=55.90 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=24.3
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.+...+ .+.+|+|+|||||||++.+|.-.+
T Consensus 18 ~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 18 VVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence 444444 488999999999999999998655
No 280
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.11 E-value=0.0004 Score=56.34 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
-.+++|+|++||||||++..|.+.+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 35899999999999999999999884
No 281
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.10 E-value=0.00038 Score=62.13 Aligned_cols=43 Identities=21% Similarity=0.195 Sum_probs=35.7
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccC------CccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~------~~G~i~ldgd~ 140 (279)
-+++|+++.|.|++||||||++..++.....+ +.+.++++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 46889999999999999999999998764334 56788898765
No 282
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.10 E-value=0.00037 Score=61.08 Aligned_cols=41 Identities=22% Similarity=0.186 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+...+.|+||+|+||||++++|++.+.......+.++...+
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 34689999999999999999999998433344566765544
No 283
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.07 E-value=0.00056 Score=61.62 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=35.2
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHcccc------CCccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHW------RGKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~------~~~G~i~ldgd~ 140 (279)
-+++|+++.|.|++||||||++..++..... .+.+.++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4689999999999999999999999886312 256788898765
No 284
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.05 E-value=0.0016 Score=57.95 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
.+.+++|+||+|||||||+..|+..++
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 356899999999999999999999873
No 285
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.02 E-value=0.00054 Score=56.31 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcccc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHW 128 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~ 128 (279)
..+.|.|++|+|||||+++|+..+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998843
No 286
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.02 E-value=0.00044 Score=61.62 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++.+++|+||+|||||||+..|+..++ ...++.|..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~ 37 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDSM 37 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCGG
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCcc
Confidence 356899999999999999999999873 234555543
No 287
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.00 E-value=0.00047 Score=62.77 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=30.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHcccc----------CCccEEEEcCeec
Q 023675 104 VIWITGLSGSGKSTLACALSQALHW----------RGKLTYILDGDNC 141 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~----------~~~G~i~ldgd~i 141 (279)
+++|+|++|+|||||++.|.+.... +..+.+.++|..+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 4999999999999999999987631 5568888888655
No 288
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.99 E-value=0.00057 Score=63.61 Aligned_cols=39 Identities=26% Similarity=0.186 Sum_probs=31.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccc-----------cCCccEEEEcCeec
Q 023675 103 CVIWITGLSGSGKSTLACALSQALH-----------WRGKLTYILDGDNC 141 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~-----------~~~~G~i~ldgd~i 141 (279)
-.++|+|+||+|||||++.|.+... ++..|.+.++|..+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 4799999999999999999998752 25567888888755
No 289
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=96.98 E-value=0.00035 Score=70.13 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=34.9
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHH
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~ 120 (279)
.|.+++...+-..+.+++++.+++++++|.||||||||+.
T Consensus 15 ~I~i~gar~hNLkni~v~iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 15 FVQVRGARQHNLKDISVKVPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp EEEEEEECSTTCCSEEEEEESSSEEEEESSTTSSHHHHHT
T ss_pred eEEEeeccccCCCCeeEEecCCCEEEEECCCCCCHHHHHH
Confidence 4777877666667789999999999999999999999983
No 290
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.96 E-value=0.00042 Score=63.75 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=30.5
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHc-----------cccCCccEEEEcC
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQA-----------LHWRGKLTYILDG 138 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~-----------l~~~~~G~i~ldg 138 (279)
.+..+..++|+|+||+|||||+++|.+. . .|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi-~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTI-DPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCcccc-CceeEEEEECC
Confidence 4556788999999999999999999987 3 45556665544
No 291
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.94 E-value=0.00029 Score=59.20 Aligned_cols=33 Identities=33% Similarity=0.325 Sum_probs=27.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 103 CVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
-.|+|+|..||||||+++.|+. ++.+ ++|.|.+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~-----vidaD~i 42 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGAS-----LVDTDLI 42 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCE-----EEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCc-----EEECcHH
Confidence 4689999999999999999998 5343 8898875
No 292
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.94 E-value=0.00071 Score=54.08 Aligned_cols=28 Identities=21% Similarity=0.280 Sum_probs=24.4
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
..+..+.|+|++|+||||+++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999873
No 293
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.93 E-value=0.0005 Score=58.31 Aligned_cols=32 Identities=28% Similarity=0.308 Sum_probs=26.7
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHcccc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHW 128 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~ 128 (279)
...++|.+|+|.|++||||||+++.|+..+..
T Consensus 16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp ---CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34567999999999999999999999998854
No 294
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.92 E-value=0.00049 Score=58.48 Aligned_cols=26 Identities=27% Similarity=0.232 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+|.+|+|.|.+||||||+++.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999988
No 295
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.92 E-value=0.0036 Score=58.21 Aligned_cols=43 Identities=30% Similarity=0.443 Sum_probs=36.5
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCeecc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGDNCR 142 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd~i~ 142 (279)
.++.+++++|++|+||||++..|+..+... +.-..++|.|..+
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 457899999999999999999999988655 6777889988654
No 296
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.0016 Score=60.61 Aligned_cols=43 Identities=19% Similarity=0.081 Sum_probs=34.5
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+-++++.-+.|.||+|||||+++++|++.+..+ .+.+++.++.
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~---f~~v~~s~l~ 252 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNAT---FLKLAAPQLV 252 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGGC
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCC---EEEEehhhhh
Confidence 346677889999999999999999999988543 5667776653
No 297
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=96.88 E-value=0.00045 Score=69.98 Aligned_cols=40 Identities=33% Similarity=0.463 Sum_probs=35.0
Q ss_pred CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHH
Q 023675 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~ 119 (279)
..|.+++...+-..+.++.++++++++|+|+||||||||+
T Consensus 22 ~~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 22 DKIIVKGARAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLA 61 (972)
T ss_dssp CEEEEEEECSSSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred ceEEEeccccccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence 4577887777777788999999999999999999999997
No 298
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.88 E-value=0.00088 Score=57.07 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=31.0
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++.+.-+.|.||+|+||||++++|++.+.. ..+.++..++
T Consensus 36 ~~~~~~vll~G~~GtGKT~la~~la~~~~~---~~~~~~~~~~ 75 (262)
T 2qz4_A 36 AKVPKGALLLGPPGCGKTLLAKAVATEAQV---PFLAMAGAEF 75 (262)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTC---CEEEEETTTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEechHHH
Confidence 345567899999999999999999998743 3566666554
No 299
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.88 E-value=0.0019 Score=55.88 Aligned_cols=40 Identities=23% Similarity=0.189 Sum_probs=31.1
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+.++..+.|.||+|+||||++++|++.+.. ..+.++..++
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~~---~~~~v~~~~~ 87 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETNA---TFIRVVGSEL 87 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTTC---EEEEEEGGGG
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCC---CEEEEehHHH
Confidence 456778999999999999999999998743 3555655444
No 300
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=96.87 E-value=0.00049 Score=69.89 Aligned_cols=41 Identities=32% Similarity=0.385 Sum_probs=35.5
Q ss_pred CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHH
Q 023675 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLAC 120 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~ 120 (279)
..|.+++...+-..+.++.++++++++|+|+||||||||+-
T Consensus 24 ~~I~i~gar~hNLkni~v~iP~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 24 DRLIVKGAREHNLRSVDLDLPRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp CEEEEEEECSSSCCSEEEEEESSSEEEEEESTTSSHHHHHT
T ss_pred CcEEEecccccccCceeeeccCCCEEEEECCCCCcHHHHHH
Confidence 34778877777777889999999999999999999999973
No 301
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.87 E-value=0.0018 Score=60.14 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=34.0
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+-++++.=+.|.||+|+|||+++++|++.+.. ..+.+++.++.
T Consensus 201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~---~~~~v~~~~l~ 243 (428)
T 4b4t_K 201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA---AFIRVNGSEFV 243 (428)
T ss_dssp HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC---EEEEEEGGGTC
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecchhh
Confidence 34567777999999999999999999998853 36667766553
No 302
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.86 E-value=0.00044 Score=61.12 Aligned_cols=26 Identities=35% Similarity=0.211 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
++..++|+|++|+|||||++.|.+.-
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45589999999999999999999864
No 303
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.86 E-value=0.00051 Score=54.47 Aligned_cols=24 Identities=33% Similarity=0.289 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
..++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999853
No 304
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.85 E-value=0.0003 Score=62.93 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=27.2
Q ss_pred ceeccCCeE--EEEEcCCCChHHHHHHHHHHccc
Q 023675 96 QLLQQKGCV--IWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 96 sl~i~~g~~--i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
+..++.|++ +.|+||+|+||||+++++++.+.
T Consensus 38 ~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 38 RKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 445566766 99999999999999999999983
No 305
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.85 E-value=0.00068 Score=56.49 Aligned_cols=27 Identities=44% Similarity=0.363 Sum_probs=24.5
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
..|..++|+|++|||||||+..|++..
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 357889999999999999999999876
No 306
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.85 E-value=0.00033 Score=60.40 Aligned_cols=28 Identities=32% Similarity=0.226 Sum_probs=24.8
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
..++.+|+|.|++||||||+++.|+..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578899999999999999999999988
No 307
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.85 E-value=0.00074 Score=52.80 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=29.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+.+.-+.|.|++|+|||++++.|.......+...+ ++...+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP 62 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC
Confidence 34566899999999999999999998633333344 555433
No 308
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.83 E-value=0.0032 Score=56.43 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.4
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccC------CccEEEEcCe
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWR------GKLTYILDGD 139 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~------~~G~i~ldgd 139 (279)
..+..+.|+||+|+||||+++.+++.+... +...++++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 456789999999999999999999987321 3345566653
No 309
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0019 Score=60.09 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=34.4
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+-++++.=+.|.||+|||||+++++|++.+..+ .+.+++.++.
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~---~~~v~~s~l~ 252 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGAN---FIFSPASGIV 252 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCE---EEEEEGGGTC
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC---EEEEehhhhc
Confidence 346777889999999999999999999988543 5667766553
No 310
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.83 E-value=0.0016 Score=59.91 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=33.5
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
-++++.=+.|.||+|+|||++++++++.+..+ .+.+++-++.
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~---f~~v~~s~l~ 219 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCK---FIRVSGAELV 219 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCE---EEEEEGGGGS
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCC---ceEEEhHHhh
Confidence 45666778999999999999999999988543 6667776653
No 311
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=96.82 E-value=0.00046 Score=69.88 Aligned_cols=38 Identities=37% Similarity=0.444 Sum_probs=31.2
Q ss_pred eEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHH
Q 023675 82 ILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLA 119 (279)
Q Consensus 82 i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~ 119 (279)
|.+++...+-..+.++.++++++++++|+||||||||+
T Consensus 4 i~i~gar~hNLkni~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 4 IVVKGARVHNLKNITVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp EEEESBCSTTCCSBCCEEETTSEEEEEESTTSSSHHHH
T ss_pred EEEeCccccccCcceeccCCCcEEEEECCCCCcHHHHH
Confidence 45555555555677899999999999999999999998
No 312
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.79 E-value=0.0011 Score=59.55 Aligned_cols=40 Identities=15% Similarity=0.077 Sum_probs=30.9
Q ss_pred cCCe--EEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCe
Q 023675 100 QKGC--VIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGD 139 (279)
Q Consensus 100 ~~g~--~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd 139 (279)
..+. .+.|+|++|+||||+++.+++.+... +...++++..
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~ 82 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGF 82 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCc
Confidence 3456 89999999999999999999998433 3456666643
No 313
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.79 E-value=0.00087 Score=60.79 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=35.7
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
+++|.++.|.|++|+|||||+..++......+...++++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~ 101 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 101 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 679999999999999999999998877645566788899853
No 314
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.78 E-value=0.00071 Score=59.04 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=29.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++..+.|.||+|+||||++++|++.+.. ..+.++..++
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~---~~~~i~~~~l 90 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSA---TFLNISAASL 90 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTC---EEEEEESTTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCC---CeEEeeHHHH
Confidence 35678999999999999999999998742 2445555443
No 315
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.78 E-value=0.00095 Score=53.29 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.3
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
..+..+.|+|++|+||||+++.++..+.
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999873
No 316
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.77 E-value=0.00044 Score=65.74 Aligned_cols=42 Identities=24% Similarity=0.227 Sum_probs=33.3
Q ss_pred CeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 81 NILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 81 ~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.+.++|.. .-+..++.+.+| +.+|+|+||||||||+.+|...
T Consensus 42 ~L~i~nf~--~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 42 RLEIRNLA--TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp EEEEESBT--TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred eeeccccc--ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 36666543 234568888888 9999999999999999999665
No 317
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.00065 Score=60.87 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=31.2
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccC---CccEEEEcCe
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWR---GKLTYILDGD 139 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~---~~G~i~ldgd 139 (279)
..+..+.|+|++|+|||||++.+++.+... +...++++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~ 85 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTR 85 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECC
Confidence 567899999999999999999999987322 3456666643
No 318
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.74 E-value=0.00093 Score=62.95 Aligned_cols=40 Identities=28% Similarity=0.431 Sum_probs=30.5
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+.+++| +.|+||||+||||++++|++.+..| .+.+++.++
T Consensus 46 ~~~p~g--vLL~GppGtGKT~Laraia~~~~~~---f~~is~~~~ 85 (476)
T 2ce7_A 46 ARMPKG--ILLVGPPGTGKTLLARAVAGEANVP---FFHISGSDF 85 (476)
T ss_dssp CCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC---EEEEEGGGT
T ss_pred CCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC---eeeCCHHHH
Confidence 344555 8899999999999999999987433 556666554
No 319
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.73 E-value=0.00093 Score=55.54 Aligned_cols=30 Identities=33% Similarity=0.362 Sum_probs=24.0
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.+.+.+ .+.+|+|+|||||||++.+|.-.+
T Consensus 18 ~i~f~~-~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 18 VVEFKE-GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEeCC-CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 444444 488999999999999999987555
No 320
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.73 E-value=0.0008 Score=59.64 Aligned_cols=38 Identities=26% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg 138 (279)
.+..+.|.||+|+||||+++++++.+...+...++++.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 35679999999999999999999988433334455554
No 321
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0029 Score=58.63 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=34.6
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+-++++.=+.|.||+|+|||+++++|++.+..+ .+.+++.++.
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~---fi~v~~s~l~ 253 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSAT---FLRIVGSELI 253 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCE---EEEEESGGGC
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCCC---EEEEEHHHhh
Confidence 345677889999999999999999999988533 6677776663
No 322
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.72 E-value=0.0008 Score=56.57 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCC
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRG 130 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~ 130 (279)
+|.+|+|.|++||||||+++.|...|...+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~ 31 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQLG 31 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 488999999999999999999999985443
No 323
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.71 E-value=0.00072 Score=61.15 Aligned_cols=35 Identities=26% Similarity=0.126 Sum_probs=26.8
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHH--ccccCCccEE
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQ--ALHWRGKLTY 134 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~--~l~~~~~G~i 134 (279)
++.++ .|+|+|.+|||||||++.|.+ ++ +.+.|.+
T Consensus 31 ~~~lp---~I~vvG~~~sGKSSLln~l~g~~~l-p~~~~~v 67 (360)
T 3t34_A 31 WDSLP---AIAVVGGQSSGKSSVLESIVGKDFL-PRGSGIV 67 (360)
T ss_dssp -CCCC---EEEEECBTTSSHHHHHHHHHTSCCS-CCCSSSC
T ss_pred cccCC---EEEEECCCCCcHHHHHHHHhCCCcC-CCCCCcc
Confidence 44554 899999999999999999999 44 4544433
No 324
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.71 E-value=0.0011 Score=57.94 Aligned_cols=42 Identities=26% Similarity=0.313 Sum_probs=31.3
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCC----ccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRG----KLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~----~G~i~ldgd~i 141 (279)
.++..+.|+|++|+||||+++.++..+...+ ...+.++..++
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 4566799999999999999999998874321 24566665554
No 325
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.71 E-value=0.0012 Score=54.05 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+|.+++++|++||||||++..++..+
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999985555444
No 326
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.69 E-value=0.00089 Score=56.44 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=26.0
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
.+|.+|++-|++||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999999999984
No 327
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.0022 Score=59.91 Aligned_cols=43 Identities=21% Similarity=0.110 Sum_probs=34.6
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
+-++++.=+.|.||+|+|||+++++|++.+..+ .+.+++.++.
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~---fi~vs~s~L~ 280 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDAT---FIRVIGSELV 280 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCE---EEEEEGGGGC
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCC---eEEEEhHHhh
Confidence 346778889999999999999999999988543 5667766653
No 328
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.68 E-value=0.0009 Score=53.80 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++|+|++|+|||||++.|.+.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999984
No 329
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.65 E-value=0.0015 Score=59.10 Aligned_cols=41 Identities=37% Similarity=0.358 Sum_probs=31.3
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
.+..+++|+|++|+||||+++.|+..+...+.-...++.|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 34568999999999999999999988754444455566553
No 330
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=96.62 E-value=0.0008 Score=66.02 Aligned_cols=39 Identities=23% Similarity=0.071 Sum_probs=29.4
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEE
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTY 134 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i 134 (279)
++.++++..++|+|++|+|||||++.|.+.... ...|.|
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V 42 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV 42 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee
Confidence 456788999999999999999999999976531 234555
No 331
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.62 E-value=0.00075 Score=54.50 Aligned_cols=22 Identities=41% Similarity=0.557 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHc
Q 023675 104 VIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.++|+|++|+|||||++.+.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999985
No 332
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.60 E-value=0.0011 Score=58.30 Aligned_cols=39 Identities=15% Similarity=0.123 Sum_probs=30.0
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
.+++..+.|.||+|+|||+++++|++.+.. ..+.++...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~---~~i~v~~~~ 71 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGI---NPIMMSAGE 71 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTC---CCEEEEHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC---CEEEEeHHH
Confidence 445667889999999999999999998843 355565433
No 333
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.57 E-value=0.0015 Score=59.66 Aligned_cols=37 Identities=27% Similarity=0.184 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld 137 (279)
.+..++++|++||||||+++.|...+...+...+.+|
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 4667899999999999999999987744444444555
No 334
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.56 E-value=0.0021 Score=57.16 Aligned_cols=42 Identities=10% Similarity=0.110 Sum_probs=33.3
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
-+++|+++.|.|+||+||||++..++......+...+++...
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 478999999999999999999999987653444456666654
No 335
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.55 E-value=0.0013 Score=60.52 Aligned_cols=26 Identities=42% Similarity=0.569 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
..+++|+||+|||||||+..|+..++
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC
Confidence 45899999999999999999999884
No 336
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.54 E-value=0.0037 Score=58.28 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+..+.|+||+|+||||++++|++.++.+ .+.+++..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~---~~~v~~~~~ 86 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKF 86 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCC---ceeecchhh
Confidence 3458899999999999999999998543 555665444
No 337
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.54 E-value=0.0024 Score=54.44 Aligned_cols=42 Identities=21% Similarity=0.282 Sum_probs=33.9
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
+..+.-+++++|..|+||||+++.|+..+. .+.-...+|.|.
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 345567899999999999999999998885 555566788765
No 338
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.50 E-value=0.0008 Score=62.62 Aligned_cols=42 Identities=36% Similarity=0.544 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
++.+++++|++|+||||++..|+..+...+.-..+++.|..+
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 346999999999999999999999885444446677777554
No 339
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.49 E-value=0.0021 Score=52.31 Aligned_cols=25 Identities=36% Similarity=0.375 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.|.-+.|.|+||+||||++..|...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 5788999999999999999998874
No 340
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.48 E-value=0.002 Score=60.12 Aligned_cols=44 Identities=16% Similarity=0.143 Sum_probs=34.0
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCe
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGD 139 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd 139 (279)
..-+++|+++.|.|+||+||||++..++..+.. .+....++...
T Consensus 197 ~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 197 TSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp HSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred cCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 345889999999999999999999999998732 23345666543
No 341
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.45 E-value=0.0017 Score=53.23 Aligned_cols=28 Identities=32% Similarity=0.514 Sum_probs=23.2
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~ 124 (279)
++..++. .++++|++|+|||||++.+.+
T Consensus 20 ~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 20 GLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred hccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 4555555 578999999999999999976
No 342
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.45 E-value=0.0019 Score=56.19 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+..+.|+|++|+||||+++.|+..+.. ..+.++...+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~---~~~~i~~~~~ 86 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA---PFIKVEATKF 86 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC---CEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC---CEEEEcchhc
Confidence 4567889999999999999999998843 3566666554
No 343
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.44 E-value=0.0015 Score=55.16 Aligned_cols=25 Identities=24% Similarity=0.288 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.|+|+|++|+|||||++.|.+..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCC
Confidence 3568999999999999999999875
No 344
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.44 E-value=0.0019 Score=61.16 Aligned_cols=43 Identities=35% Similarity=0.448 Sum_probs=32.7
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
.++.+|+|+|++|+||||+++.|+..+...+.-..+++.|..+
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 4577999999999999999999998875444556677776543
No 345
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.40 E-value=0.0028 Score=51.44 Aligned_cols=28 Identities=32% Similarity=0.522 Sum_probs=20.4
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~ 124 (279)
++..++. .++++|++|+|||||++.+.+
T Consensus 18 ~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 18 GLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred hccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 4444444 689999999999999999997
No 346
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.39 E-value=0.0028 Score=54.35 Aligned_cols=41 Identities=20% Similarity=0.106 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+..+.|+|++|+|||++++.|...+...+...+.++...+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 34678899999999999999999987433345667765433
No 347
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.39 E-value=0.0039 Score=55.32 Aligned_cols=39 Identities=23% Similarity=0.284 Sum_probs=29.9
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++.-+.|.||+|+|||+++++++..+.. ..+.++..++
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~v~~~~l 87 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANS---TFFSVSSSDL 87 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTC---EEEEEEHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCC---CEEEEchHHH
Confidence 35567999999999999999999998742 3555655443
No 348
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.38 E-value=0.0019 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
..+.|.|++|+||||+++.+++.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999999874
No 349
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.36 E-value=0.0024 Score=56.65 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=25.2
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-+++|+++.|.|++||||||++..++..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999998864
No 350
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.36 E-value=0.003 Score=57.41 Aligned_cols=23 Identities=48% Similarity=0.540 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHH
Q 023675 102 GCVIWITGLSGSGKSTLACALSQ 124 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~ 124 (279)
+..++|+|.+|+|||||+++|.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~ 24 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTK 24 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 45789999999999999999998
No 351
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.34 E-value=0.0039 Score=50.34 Aligned_cols=39 Identities=23% Similarity=0.194 Sum_probs=27.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc----ccCCcc----EEEEcCeec
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL----HWRGKL----TYILDGDNC 141 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l----~~~~~G----~i~ldgd~i 141 (279)
-.++|+|.+|+|||||++.+.+.. ..++.+ .+.+++..+
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 468999999999999998777653 134444 455666544
No 352
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.34 E-value=0.003 Score=53.43 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=27.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l 136 (279)
.+|.++.++|++|+||||++-.++..+...+.-.+++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4689999999999999998887777764444444555
No 353
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.34 E-value=0.0021 Score=57.28 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=30.9
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++.-+.|.||+|+|||+++++++..+. +...+.+++.++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l 82 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL 82 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSS
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHH
Confidence 4567899999999999999999999872 234556666554
No 354
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.34 E-value=0.0019 Score=58.23 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcC
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDG 138 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldg 138 (279)
++..+.|+||+|+||||++++|+..+..+ .+.++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~---~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVP---FTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCC---EEEech
Confidence 45678999999999999999999988433 444544
No 355
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.32 E-value=0.0032 Score=52.09 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
....++|+|++|+|||||++.|.+.+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 44689999999999999999999876
No 356
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.32 E-value=0.003 Score=56.65 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
+|..+.|.||+|+||||+++.+++.+ ......+.+.+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l-~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQAL-GPDTPFTAIAGSE 107 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHH-CSSCCEEEEEGGG
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh-cccCCcccccchh
Confidence 46789999999999999999999998 3333455555443
No 357
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.30 E-value=0.0012 Score=66.22 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=35.3
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeecc
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNCR 142 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i~ 142 (279)
++.+.++..+.|+||||+|||||+++|++.+. .+.+.+++.++.
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~---~~~i~v~~~~l~ 548 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---ANFISIKGPELL 548 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT---CCCCCCCCSSST
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC---CCEEEEechHhh
Confidence 45667899999999999999999999999984 345666665553
No 358
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.30 E-value=0.0019 Score=55.93 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++|+|++|||||||++.|.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999874
No 359
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.30 E-value=0.0023 Score=55.16 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=28.4
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILD 137 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ld 137 (279)
.+++..+.|+||+|+||||++++++..+..+ .+.++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~---~~~i~ 96 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFP---FIKIC 96 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCS---EEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCC---EEEEe
Confidence 4556789999999999999999999987433 44554
No 360
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.29 E-value=0.0022 Score=50.15 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|++|+|||||++.|.+..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 361
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.29 E-value=0.0027 Score=50.26 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.6
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
++...|+++|.+|+|||||++.|.+.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567999999999999999999874
No 362
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.27 E-value=0.0038 Score=51.49 Aligned_cols=37 Identities=22% Similarity=0.106 Sum_probs=27.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l 136 (279)
.+|.+++++|++||||||.+-.++..+...+.-...+
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 5689999999999999998888877764333333333
No 363
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.26 E-value=0.0024 Score=49.67 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|++|+|||||++.+.+.-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998653
No 364
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.25 E-value=0.0019 Score=54.01 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=24.6
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+++...+.+.||+|+||||++.+|++.+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 4455579999999999999999999987
No 365
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.25 E-value=0.003 Score=50.93 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+.-.++++|++|+|||||++.|.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34579999999999999999999865
No 366
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.25 E-value=0.0031 Score=56.89 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=31.0
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++..+.|+|++|+||||++++|+..+.. ..+.++..++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~---~~~~i~~~~l 153 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGA---TFFSISASSL 153 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTC---EEEEEEGGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCC---eEEEEehHHh
Confidence 45678999999999999999999998742 3566666554
No 367
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.24 E-value=0.0041 Score=62.10 Aligned_cols=43 Identities=19% Similarity=0.301 Sum_probs=34.0
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+-++++.-+.|.||+|+|||+|+++|++.+.. ..+.+++.++
T Consensus 232 ~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~---~~~~v~~~~l 274 (806)
T 3cf2_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGA---FFFLINGPEI 274 (806)
T ss_dssp SCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC---EEEEEEHHHH
T ss_pred hcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC---eEEEEEhHHh
Confidence 445677888999999999999999999998743 3566766554
No 368
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.24 E-value=0.0023 Score=49.67 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++++|.+|+|||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998764
No 369
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.22 E-value=0.0026 Score=49.43 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++++|++|+|||||++.|.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998864
No 370
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.22 E-value=0.0032 Score=56.99 Aligned_cols=38 Identities=29% Similarity=0.354 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++..+.|+||+|+||||++++|+..+.. ..+.++...+
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~---~~~~~~~~~~ 108 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDI---PIAISDATSL 108 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC---CEEEEEGGGC
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCC---CEEEecchhh
Confidence 3456899999999999999999998843 3555555443
No 371
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.21 E-value=0.0035 Score=55.52 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=24.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
+..+.|.|++|+|||+|+++|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999999874
No 372
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.21 E-value=0.0031 Score=57.37 Aligned_cols=42 Identities=26% Similarity=0.346 Sum_probs=34.8
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
+++|.++.|.|++|+|||||+..++......+...++++.+.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 578999999999999999999888876544556678888764
No 373
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.20 E-value=0.00095 Score=57.33 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHW 128 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~ 128 (279)
+.-+.|+||+|+||||++++|++.+..
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 334789999999999999999998743
No 374
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.19 E-value=0.0027 Score=49.47 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|.+|+|||||++.|.+.-
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 458999999999999999998753
No 375
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.17 E-value=0.0026 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++++|.+|+|||||++.|.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999874
No 376
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.16 E-value=0.0041 Score=58.06 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++.-+.|.||+|+|||+++++|++.+. .....+.+++-++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~-~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG-SKVPFCPMVGSEV 101 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC-TTSCEEEEEGGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC-CCceEEEEeHHHH
Confidence 456789999999999999999999984 2234556665544
No 377
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.16 E-value=0.0039 Score=56.07 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=33.6
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
-+++|+++.|.|+||+||||++..++......+....++..+
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 578999999999999999999999988774444445566553
No 378
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.15 E-value=0.0029 Score=49.48 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++++|++|+|||||++.|.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 379
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.14 E-value=0.0025 Score=50.22 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++|+|++|+|||||++.|.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEECCCCccHHHHHHHHhcCC
Confidence 358999999999999999998764
No 380
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.14 E-value=0.003 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|++|+|||||++.|.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 458999999999999999998864
No 381
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.13 E-value=0.0045 Score=55.07 Aligned_cols=25 Identities=44% Similarity=0.458 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.|.-++|+|+||+||||++..|.+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 5889999999999999999999884
No 382
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.13 E-value=0.003 Score=49.51 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|.+|+|||||++.|.+.-
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998753
No 383
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.12 E-value=0.0031 Score=49.99 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|++|+|||||++.|.+..
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998754
No 384
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.11 E-value=0.0031 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++++|.+|+|||||++.|.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999875
No 385
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.11 E-value=0.0031 Score=49.84 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|++|+|||||++.|.+.-
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
No 386
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.11 E-value=0.0029 Score=49.53 Aligned_cols=23 Identities=35% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++++|++|+|||||++.|.+.-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
No 387
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.08 E-value=0.0043 Score=48.65 Aligned_cols=25 Identities=36% Similarity=0.551 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
+.-.++++|++|+|||||++.|.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4457999999999999999999764
No 388
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.08 E-value=0.0028 Score=49.74 Aligned_cols=22 Identities=41% Similarity=0.524 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHc
Q 023675 104 VIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.++++|++|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999754
No 389
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.06 E-value=0.0032 Score=49.85 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=21.0
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++++|.+|+|||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999876
No 390
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.06 E-value=0.0029 Score=54.06 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.|+|+|.+|+|||||++.|.+.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 4568999999999999999998764
No 391
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.04 E-value=0.0035 Score=48.96 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++++|.+|+|||||++.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 392
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.04 E-value=0.0031 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.+.|.|++|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 393
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.02 E-value=0.0046 Score=54.85 Aligned_cols=35 Identities=26% Similarity=0.204 Sum_probs=27.1
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
...+.|.|++|+||||+++.++..+..+ .+.+++.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~---~~~~~~~ 89 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSAN---IKTTAAP 89 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCC---EEEEEGG
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCC---eEEecch
Confidence 3468999999999999999999987433 4445543
No 394
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.02 E-value=0.0038 Score=52.50 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=28.3
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHc-cccCCccEEEEcC
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQA-LHWRGKLTYILDG 138 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~-l~~~~~G~i~ldg 138 (279)
+++|+++.|.|++|+||||++..++-. ....+...+++..
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 578999999999999999999776532 2122334555554
No 395
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.02 E-value=0.0036 Score=49.95 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|++|+|||||++.|.+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
No 396
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.02 E-value=0.0038 Score=56.07 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
..+..+.|.||+|+||||+++.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999999876
No 397
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.02 E-value=0.0029 Score=58.84 Aligned_cols=38 Identities=16% Similarity=0.158 Sum_probs=29.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCe
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGD 139 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd 139 (279)
+..+.|.|++|+|||||+++|++.+.. ++...++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 467999999999999999999998732 23445566544
No 398
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.01 E-value=0.0032 Score=54.80 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++|+|.+|+|||||++.|.+.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999985
No 399
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.00 E-value=0.0022 Score=50.17 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++++|.+|+|||||++.|.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999997654
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.98 E-value=0.0038 Score=49.95 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|++|+|||||++.|.+.-
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998743
No 401
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.98 E-value=0.005 Score=49.59 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
..-.++++|++|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999875
No 402
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.98 E-value=0.0062 Score=50.52 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+...++|+|.+|+|||||++.|...+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999876
No 403
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.95 E-value=0.0071 Score=56.30 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=29.7
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++.-+.|.||+|+|||+++++|+..+. +...+.+++.++
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l 204 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDL 204 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC--
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHH
Confidence 4567899999999999999999999872 233555665544
No 404
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.94 E-value=0.004 Score=49.23 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++++|++|+|||||++.|.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 45899999999999999999865
No 405
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.94 E-value=0.004 Score=50.23 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|.+|+|||||++.|.+.-
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998853
No 406
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.94 E-value=0.0062 Score=55.44 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=30.4
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.++..+.|.|++|+|||+++++|+..+.. ..+.++..++
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~---~~~~v~~~~l 184 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNA---TFFNISAASL 184 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEECSCCC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcC---cEEEeeHHHh
Confidence 34678999999999999999999998742 3556665544
No 407
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.93 E-value=0.0041 Score=49.96 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+++|.+|+|||||++.|.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 408
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.92 E-value=0.0055 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.|+++|++|+|||||++.|.+.-
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc
Confidence 4468999999999999999999863
No 409
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.91 E-value=0.0044 Score=48.32 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHc
Q 023675 104 VIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.++++|.+|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 410
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.90 E-value=0.0038 Score=56.80 Aligned_cols=22 Identities=50% Similarity=0.604 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHHc
Q 023675 104 VIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.++|+|++|+|||||+++|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4799999999999999999986
No 411
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.90 E-value=0.0043 Score=48.93 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|.+|+|||||++.|.+.-
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998764
No 412
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.89 E-value=0.0044 Score=49.11 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|.+|+|||||++.|.+.-
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 468999999999999999998754
No 413
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.89 E-value=0.0041 Score=49.07 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++++|++|+|||||++.|.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 414
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=95.89 E-value=0.003 Score=52.71 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=33.7
Q ss_pred cccCCCcceeeeeeccccc--CccccccCcccccccc
Q 023675 15 AICSPSLAEVDFRTSVKMS--GFFNVSRLRSLQPIKA 49 (279)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~id~ 49 (279)
.|.+||+|.|+|.++.||+ +|.+++.+|.|.++|.
T Consensus 151 ~l~~gd~a~v~l~~~~pi~~e~~~~~~~~Grfilrd~ 187 (204)
T 3e1y_E 151 FVKQDQVCIARLRTAGTICLETFKDFPQMGRFTLRDE 187 (204)
T ss_dssp CCCTTCEEEEEEEESSCCCCCCTTSSGGGTEEEEECS
T ss_pred CcCCCCEEEEEEEECCeEEEEEcccCcCCCCEEEEEC
Confidence 5999999999999999999 9999999999999998
No 415
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.89 E-value=0.0061 Score=48.84 Aligned_cols=25 Identities=32% Similarity=0.236 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
--.++|+|.+|+|||||++.|.+.-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3478999999999999999998763
No 416
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.88 E-value=0.0038 Score=56.37 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=28.7
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCee
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDN 140 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~ 140 (279)
.++.-+.|+||+|+||||++++|+..+.. ..+.++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~---~~~~v~~~~ 119 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANS---TFFSVSSSD 119 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTC---EEEEEEHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCC---CEEEeeHHH
Confidence 34556889999999999999999998742 244555443
No 417
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.87 E-value=0.0045 Score=49.20 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|++|+|||||++.|.+.-
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998753
No 418
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.87 E-value=0.0046 Score=49.04 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|++|+|||||++.|.+.-
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998763
No 419
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.86 E-value=0.0039 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHccc
Q 023675 104 VIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
.+.|.||+|+||||+++.+++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999874
No 420
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.86 E-value=0.0057 Score=48.54 Aligned_cols=26 Identities=15% Similarity=0.087 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+.-.++++|.+|+|||||++.+.+.-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998653
No 421
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.86 E-value=0.0041 Score=53.55 Aligned_cols=23 Identities=35% Similarity=0.362 Sum_probs=21.1
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++|+|.+|||||||++.|.+.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999863
No 422
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.84 E-value=0.0035 Score=50.14 Aligned_cols=23 Identities=39% Similarity=0.413 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.++++|.+|+|||||++.|.+.-
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998864
No 423
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.84 E-value=0.0035 Score=52.94 Aligned_cols=27 Identities=26% Similarity=0.357 Sum_probs=22.3
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQ 124 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~ 124 (279)
.+..|+.++++|++||||||++..+.-
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 456789999999999999998776543
No 424
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.83 E-value=0.0059 Score=50.29 Aligned_cols=25 Identities=32% Similarity=0.345 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.++|+|++|+|||||++.|.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999875
No 425
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.81 E-value=0.0051 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.048 Sum_probs=22.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
-.++|+|.+|+|||||++.|.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3589999999999999999998763
No 426
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.80 E-value=0.0066 Score=56.43 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=33.3
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHcccc-CCccEEEEcCe
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHW-RGKLTYILDGD 139 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~-~~~G~i~ldgd 139 (279)
+++|+++.|.|++|+||||++..++..... .+...+++...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 789999999999999999999999887632 24457777664
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.79 E-value=0.0048 Score=49.25 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|++|+|||||++.|.+.-
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 428
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.79 E-value=0.0053 Score=54.78 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=30.9
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHcccc--CCccEEEEcCee
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHW--RGKLTYILDGDN 140 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~--~~~G~i~ldgd~ 140 (279)
+++| ++-|.|++|||||||+-.++..... ++...+++|+..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 4678 8999999999999997666554423 255678888764
No 429
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.78 E-value=0.0046 Score=48.85 Aligned_cols=23 Identities=35% Similarity=0.455 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.|+++|++|+|||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999764
No 430
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.78 E-value=0.0051 Score=49.92 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|.+|+|||||++.|.+.-
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 468999999999999999998653
No 431
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.77 E-value=0.0043 Score=54.82 Aligned_cols=26 Identities=35% Similarity=0.248 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+.-.|+|+|.+|+|||||++.|.+.-
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34589999999999999999999863
No 432
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.77 E-value=0.0053 Score=49.96 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.|+|+|.+|+|||||++.|.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3468999999999999999998764
No 433
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.76 E-value=0.005 Score=49.40 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|++|+|||||++.|.+.-
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998763
No 434
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.76 E-value=0.0053 Score=58.25 Aligned_cols=29 Identities=24% Similarity=0.135 Sum_probs=26.2
Q ss_pred ceeccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675 96 QLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (279)
Q Consensus 96 sl~i~~g~~i~lvG~sGsGKSTl~~~L~~ 124 (279)
.+.+.++..+.+.|.+||||||+++.|..
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence 67778889999999999999999999875
No 435
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.76 E-value=0.0054 Score=55.62 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=23.6
Q ss_pred cceeccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675 95 QQLLQQKGCVIWITGLSGSGKSTLACALSQ 124 (279)
Q Consensus 95 ~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~ 124 (279)
..+...+ .+.+|+|+|||||||++.+|.=
T Consensus 19 ~~i~f~~-gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 19 SRIKFEK-GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence 3455555 5889999999999999999874
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.74 E-value=0.0054 Score=49.33 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++|+|.+|+|||||++.|.+.-
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998754
No 437
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.74 E-value=0.0055 Score=48.80 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
--.++|+|.+|+|||||++.|.+..
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998753
No 438
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.73 E-value=0.0051 Score=54.27 Aligned_cols=22 Identities=36% Similarity=0.367 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHHc
Q 023675 104 VIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.++|+|.+|+|||||++.|.+.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5999999999999999999985
No 439
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.72 E-value=0.0046 Score=54.77 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.6
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHccc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
|..+.|.|++|+|||++++.|+..+.
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 56799999999999999999999774
No 440
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.71 E-value=0.0057 Score=48.60 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++++|.+|+|||||++.|.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 441
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.70 E-value=0.0093 Score=50.17 Aligned_cols=27 Identities=37% Similarity=0.418 Sum_probs=21.8
Q ss_pred cCCeEEEEEcCCCChHHH-HHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKST-LACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKST-l~~~L~~~l 126 (279)
..|.+..++|++|||||| |++.+-+..
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~ 53 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGI 53 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 569999999999999999 667765544
No 442
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.70 E-value=0.0058 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|++|+|||||++.|.+.-
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
No 443
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.69 E-value=0.0063 Score=48.81 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
+.-.++++|++|+|||||++.|.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999875
No 444
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.69 E-value=0.006 Score=52.05 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.|+|+|.+|+|||||++.|.+.-
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998753
No 445
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.68 E-value=0.0056 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.541 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|.+|+|||||++.|.+.-
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 468999999999999999998753
No 446
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.68 E-value=0.0097 Score=49.95 Aligned_cols=38 Identities=21% Similarity=0.190 Sum_probs=28.6
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEE
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYIL 136 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~l 136 (279)
-++|.+.+++|++||||||.+-.++..+...+.-.+++
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~ 62 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVF 62 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 35699999999999999998888777764444434444
No 447
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.67 E-value=0.0061 Score=49.01 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.7
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.|+|+|.+|+|||||++.|.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 448
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.67 E-value=0.0054 Score=54.81 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=24.0
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
+++|.++.|.|++|+|||||+..++..
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 567888899999999999999999864
No 449
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.67 E-value=0.0075 Score=49.27 Aligned_cols=32 Identities=31% Similarity=0.270 Sum_probs=25.0
Q ss_pred EEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 104 VIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
++.++|.+||||||++..|+.. . ...++++..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~---~~~~yiaT~ 32 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A---PQVLYIATS 32 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C---SSEEEEECC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C---CCeEEEecC
Confidence 3689999999999999999865 2 346777753
No 450
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.66 E-value=0.0046 Score=49.21 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=21.7
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHH
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQ 124 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~ 124 (279)
++.-.++++|++|+|||||++.|.+
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4566899999999999999999874
No 451
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.66 E-value=0.0058 Score=48.45 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.++++|.+|+|||||++.+.+.-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998753
No 452
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.009 Score=56.62 Aligned_cols=38 Identities=21% Similarity=0.131 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
++..+.|.||+|+||||++++|++.+. ...+.++..+.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~---~~~i~in~s~~ 113 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQNASDV 113 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEECTTSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEEeCCCc
Confidence 346899999999999999999999873 23555665443
No 453
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.64 E-value=0.0079 Score=48.48 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.-.|+|+|.+|+|||||++.|.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346899999999999999999874
No 454
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.63 E-value=0.006 Score=48.48 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++|+|.+|+|||||++.|.+.
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999843
No 455
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.63 E-value=0.0059 Score=49.75 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.8
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.+.-.|+|+|.+|+|||||++.|.+.-
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 345679999999999999999999864
No 456
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.63 E-value=0.0076 Score=48.99 Aligned_cols=30 Identities=27% Similarity=0.308 Sum_probs=22.3
Q ss_pred eeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 97 LLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 97 l~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+.-++.-.|+|+|.+|+|||||++.|.+.-
T Consensus 23 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 23 FSSQKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -----CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred cCcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 334455679999999999999999998753
No 457
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.62 E-value=0.0062 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++|+|.+|+|||||++.|.+..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999853
No 458
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.62 E-value=0.0058 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.337 Sum_probs=21.6
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++|+|.+|+|||||++.|.+..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999863
No 459
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.59 E-value=0.0061 Score=49.55 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|++|+|||||++.|.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
No 460
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.0063 Score=49.07 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|.+|+|||||++.|.+.-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 461
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.58 E-value=0.0068 Score=49.29 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++|+|.+|+|||||++.+.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999863
No 462
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.58 E-value=0.0088 Score=48.42 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
+.-.++|+|.+|+|||||++.|.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999875
No 463
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.57 E-value=0.0066 Score=48.53 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.5
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
++.-.++++|++|+|||||++.+.+.-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 455679999999999999999998643
No 464
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0069 Score=48.61 Aligned_cols=24 Identities=38% Similarity=0.447 Sum_probs=21.4
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|++|+|||||++.|.+.-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
No 465
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.57 E-value=0.0069 Score=48.85 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++|+|.+|+|||||++.|.+.-
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 466
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.57 E-value=0.0058 Score=53.65 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
.+..+.|.|++|+||||+++.++..+..+ .+.+++.
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~~~ 72 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTSGP 72 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEECTT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEecc
Confidence 34678999999999999999999877422 4445543
No 467
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.56 E-value=0.0069 Score=48.76 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.|+|+|.+|+|||||++.|.+.-
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCC
Confidence 4568999999999999999998643
No 468
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.56 E-value=0.0079 Score=53.05 Aligned_cols=42 Identities=24% Similarity=0.253 Sum_probs=31.2
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
+.+..+.|+|++|+|||++++.|.......+...+.++...+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 345678999999999999999999976433444566665433
No 469
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=95.55 E-value=0.0053 Score=55.37 Aligned_cols=27 Identities=37% Similarity=0.302 Sum_probs=23.6
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
...-.++++|++|+|||||++.|.+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998864
No 470
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.55 E-value=0.0065 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|++|+|||||++.|.+.-
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 471
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.53 E-value=0.0031 Score=49.07 Aligned_cols=26 Identities=23% Similarity=0.281 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.+.-+.|.|++|+|||++++.|....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 45568999999999999999998876
No 472
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.52 E-value=0.01 Score=55.33 Aligned_cols=41 Identities=10% Similarity=0.148 Sum_probs=33.6
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCe
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGD 139 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd 139 (279)
+++|+++.|.|++|+||||++..++......+....++...
T Consensus 194 l~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 194 YKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp BCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 78999999999999999999998887764445566777654
No 473
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.52 E-value=0.0073 Score=48.76 Aligned_cols=25 Identities=28% Similarity=0.298 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.++++|.+|+|||||++.+.+.-
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998864
No 474
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0067 Score=49.83 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++|+|.+|+|||||++.|.+..
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHhCC
Confidence 368999999999999999988654
No 475
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.51 E-value=0.0073 Score=49.31 Aligned_cols=26 Identities=31% Similarity=0.295 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+.-.|+|+|++|+|||||++.|.+.-
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCC
Confidence 44579999999999999999998653
No 476
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.0084 Score=48.09 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.2
Q ss_pred cCCeEEEEEcCCCChHHHHHHHHHHc
Q 023675 100 QKGCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 100 ~~g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
++.-.++++|.+|+|||||++.|.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999853
No 477
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.50 E-value=0.0039 Score=51.56 Aligned_cols=26 Identities=31% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
..-.|+|+|.+|+|||||++.|.+.-
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34578999999999999999998863
No 478
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.49 E-value=0.0067 Score=52.48 Aligned_cols=22 Identities=41% Similarity=0.495 Sum_probs=19.6
Q ss_pred EEEEEcCCCChHHHHHHHHHHc
Q 023675 104 VIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.|+|+|.+|+|||||++.|.+.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999997654
No 479
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.46 E-value=0.0073 Score=56.33 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHccc
Q 023675 103 CVIWITGLSGSGKSTLACALSQALH 127 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l~ 127 (279)
..+.|.||+|+||||++++|++.+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999999999999999999883
No 480
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.46 E-value=0.0075 Score=49.43 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.|+++|.+|+|||||++.|.+.-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3479999999999999999998753
No 481
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.45 E-value=0.0082 Score=48.40 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.-.|+|+|.+|+|||||++.+.+.
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346899999999999999998864
No 482
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.44 E-value=0.0077 Score=53.69 Aligned_cols=44 Identities=16% Similarity=0.042 Sum_probs=33.9
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHHccccC-------CccEEEEcCeec
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQALHWR-------GKLTYILDGDNC 141 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-------~~G~i~ldgd~i 141 (279)
...+|..+.|.||+|+|||++++.+++.+... .-..+++++..+
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~ 91 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALEL 91 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCC
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecccc
Confidence 34578899999999999999999999988421 224567777654
No 483
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.44 E-value=0.0071 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=21.3
Q ss_pred EEEEEcCCCChHHHHHHHHHHcc
Q 023675 104 VIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 104 ~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.|+++|.+|+|||||++.|.+.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999874
No 484
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.43 E-value=0.005 Score=55.76 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=26.5
Q ss_pred CCeEEeecceeecCCcceeccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 80 TNILWHKNSVDKRDRQQLLQQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 80 ~~i~~~~~~~~~~~~~sl~i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+.+.+.++...|..+. ..-...-.++|+|++|+|||||++.|.+..
T Consensus 16 ~~v~~~~l~~~~~~k~-~~~~~~~~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 16 GYVGFANLPNQVHRKS-VKKGFEFTLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp -----CCHHHHHHTHH-HHHCCEECEEECCCTTSCHHHHHHHHTTCC
T ss_pred ceEEeccchHHhCCee-ecCCCCEEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4466666655554321 111111236999999999999999987653
No 485
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.43 E-value=0.011 Score=55.66 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=31.4
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccCCccEEEEcCeec
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWRGKLTYILDGDNC 141 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~~~G~i~ldgd~i 141 (279)
.+++..+.|.|++|+|||+++++|+..+. ...+.++..++
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~---~~fv~vn~~~l 274 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG---AFFFLINGPEI 274 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCS---SEEEEEEHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhC---CCEEEEEchHh
Confidence 46677899999999999999999999873 33566665444
No 486
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.43 E-value=0.0076 Score=49.64 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.++|+|.+|+|||||++.|.+.-
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999999864
No 487
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.41 E-value=0.01 Score=48.15 Aligned_cols=27 Identities=30% Similarity=0.461 Sum_probs=22.6
Q ss_pred eccCCeEEEEEcCCCChHHHHHHHHHH
Q 023675 98 LQQKGCVIWITGLSGSGKSTLACALSQ 124 (279)
Q Consensus 98 ~i~~g~~i~lvG~sGsGKSTl~~~L~~ 124 (279)
.-.+.-.++++|++|+|||||++.+.+
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHh
Confidence 334566799999999999999999864
No 488
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.38 E-value=0.0094 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
.-.++|+|.+|+|||||++.|.+..
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998754
No 489
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.36 E-value=0.0071 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.|+|+|.+|+|||||++.|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999754
No 490
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.35 E-value=0.0087 Score=49.93 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=21.5
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.-.|+|+|.+|+|||||++.|.+.
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999875
No 491
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.34 E-value=0.012 Score=55.58 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=24.9
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+..|..+.|+||+|+|||++++.|+..+
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHH
Confidence 3456789999999999999999999987
No 492
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.33 E-value=0.0081 Score=47.98 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCChHHHHHHHHHHc
Q 023675 102 GCVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 102 g~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
.-.++++|.+|+|||||++.|.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999864
No 493
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.33 E-value=0.0068 Score=49.43 Aligned_cols=23 Identities=39% Similarity=0.489 Sum_probs=20.3
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++|+|.+|+|||||++.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999653
No 494
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.30 E-value=0.0083 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.1
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.|+|+|.+|+|||||++.|.+.-
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999998753
No 495
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.30 E-value=0.0072 Score=48.72 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
+...|+|+|.+|+|||||++.|.+.-
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578999999999999999998753
No 496
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.29 E-value=0.011 Score=49.12 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCChHHHHHHHHHHcc
Q 023675 101 KGCVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 101 ~g~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
|..+|+|+|.+||||+|+++.|...+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHc
Confidence 56799999999999999999998866
No 497
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.27 E-value=0.0057 Score=48.72 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=9.8
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.++|+|.+|+|||||++.|.+.
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998754
No 498
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.27 E-value=0.0092 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.2
Q ss_pred eEEEEEcCCCChHHHHHHHHHHcc
Q 023675 103 CVIWITGLSGSGKSTLACALSQAL 126 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~l 126 (279)
-.++++|.+|+|||||++.+.+.-
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 368999999999999999998753
No 499
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.26 E-value=0.014 Score=55.06 Aligned_cols=41 Identities=24% Similarity=0.092 Sum_probs=33.5
Q ss_pred ccCCeEEEEEcCCCChHHHHHHHHHHccccC-CccEEEEcCe
Q 023675 99 QQKGCVIWITGLSGSGKSTLACALSQALHWR-GKLTYILDGD 139 (279)
Q Consensus 99 i~~g~~i~lvG~sGsGKSTl~~~L~~~l~~~-~~G~i~ldgd 139 (279)
+++|+++.|.|++|+||||++..++...... +...+++..+
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 7899999999999999999999988876333 4556777664
No 500
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.25 E-value=0.009 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=19.9
Q ss_pred eEEEEEcCCCChHHHHHHHHHHc
Q 023675 103 CVIWITGLSGSGKSTLACALSQA 125 (279)
Q Consensus 103 ~~i~lvG~sGsGKSTl~~~L~~~ 125 (279)
-.|+|+|.+|+|||||++.|.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999754
Done!