Query 023677
Match_columns 279
No_of_seqs 265 out of 1371
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 10:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023677.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023677hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h8a_C AMV V-MYB, MYB transfor 100.0 7.2E-36 2.5E-40 245.5 10.5 124 4-134 4-127 (128)
2 1h89_C C-MYB, MYB proto-oncoge 100.0 1.1E-33 3.6E-38 240.3 9.1 121 7-134 38-158 (159)
3 2k9n_A MYB24; R2R3 domain, DNA 100.0 4.8E-32 1.6E-36 216.6 10.3 105 27-138 1-105 (107)
4 1gv2_A C-MYB, MYB proto-oncoge 100.0 7.3E-32 2.5E-36 214.2 10.6 104 24-134 1-104 (105)
5 3osg_A MYB21; transcription-DN 100.0 1.2E-30 4.2E-35 214.2 12.1 106 21-134 5-110 (126)
6 3zqc_A MYB3; transcription-DNA 100.0 8.9E-31 3.1E-35 216.2 9.3 104 26-136 1-104 (131)
7 1h89_C C-MYB, MYB proto-oncoge 99.9 4.1E-27 1.4E-31 199.7 6.8 102 24-132 3-105 (159)
8 1h8a_C AMV V-MYB, MYB transfor 99.9 5.4E-23 1.9E-27 168.6 6.1 73 60-132 1-74 (128)
9 2llk_A Cyclin-D-binding MYB-li 99.8 2.8E-20 9.4E-25 139.7 5.1 59 73-132 10-68 (73)
10 2din_A Cell division cycle 5-l 99.7 1.4E-18 4.6E-23 127.3 6.2 60 79-139 2-61 (66)
11 2dim_A Cell division cycle 5-l 99.7 8E-19 2.7E-23 129.9 3.7 67 21-94 3-69 (70)
12 2cu7_A KIAA1915 protein; nucle 99.7 7.1E-18 2.4E-22 125.7 7.0 58 80-137 3-60 (72)
13 2d9a_A B-MYB, MYB-related prot 99.7 3.2E-17 1.1E-21 117.8 6.0 54 81-134 3-57 (60)
14 1guu_A C-MYB, MYB proto-oncoge 99.7 7E-17 2.4E-21 112.7 6.2 50 84-133 1-51 (52)
15 1ign_A Protein (RAP1); RAP1,ye 99.7 1.2E-16 4.1E-21 143.5 8.2 107 23-134 4-200 (246)
16 1gvd_A MYB proto-oncogene prot 99.6 1.3E-16 4.6E-21 111.3 5.8 50 84-133 1-51 (52)
17 1w0t_A Telomeric repeat bindin 99.6 3.1E-16 1.1E-20 110.1 6.4 50 85-134 1-53 (53)
18 1x41_A Transcriptional adaptor 99.6 3.9E-16 1.3E-20 112.3 6.1 53 81-133 3-56 (60)
19 1ity_A TRF1; helix-turn-helix, 99.6 6.7E-16 2.3E-20 113.9 7.2 58 78-135 2-62 (69)
20 2dim_A Cell division cycle 5-l 99.6 2.4E-16 8.2E-21 116.5 4.5 56 81-136 4-60 (70)
21 2yum_A ZZZ3 protein, zinc fing 99.6 5.9E-16 2E-20 115.8 5.7 56 81-136 3-64 (75)
22 2ltp_A Nuclear receptor corepr 99.4 1.4E-16 5E-21 123.4 0.0 56 79-134 9-64 (89)
23 2elk_A SPCC24B10.08C protein; 99.6 3.3E-15 1.1E-19 106.9 6.4 52 80-131 3-56 (58)
24 3sjm_A Telomeric repeat-bindin 99.6 4.9E-15 1.7E-19 108.2 6.7 51 84-134 9-62 (64)
25 3zqc_A MYB3; transcription-DNA 99.5 2.2E-15 7.7E-20 123.8 1.8 97 7-115 34-130 (131)
26 2juh_A Telomere binding protei 99.5 2.9E-14 1E-18 116.4 6.2 85 19-110 9-103 (121)
27 2cqr_A RSGI RUH-043, DNAJ homo 99.5 4.5E-14 1.5E-18 105.8 6.3 52 82-133 14-69 (73)
28 2d9a_A B-MYB, MYB-related prot 99.5 4.8E-14 1.6E-18 101.0 5.0 57 22-85 3-59 (60)
29 1gvd_A MYB proto-oncogene prot 99.4 6.1E-14 2.1E-18 97.7 4.0 52 25-83 1-52 (52)
30 2roh_A RTBP1, telomere binding 99.4 3.6E-13 1.2E-17 110.0 7.6 81 20-107 24-114 (122)
31 1guu_A C-MYB, MYB proto-oncoge 99.4 1.6E-13 5.4E-18 95.5 3.9 52 25-83 1-52 (52)
32 2yus_A SWI/SNF-related matrix- 99.4 1.9E-13 6.5E-18 103.8 4.6 48 83-130 15-62 (79)
33 1gv2_A C-MYB, MYB proto-oncoge 99.4 1.3E-13 4.4E-18 108.8 3.5 69 7-83 36-104 (105)
34 1x58_A Hypothetical protein 49 99.4 5.5E-13 1.9E-17 96.6 6.2 50 84-133 6-58 (62)
35 2k9n_A MYB24; R2R3 domain, DNA 99.4 8.3E-14 2.8E-18 110.7 1.5 69 7-83 33-101 (107)
36 3osg_A MYB21; transcription-DN 99.4 3.4E-13 1.2E-17 110.1 5.1 53 81-133 6-58 (126)
37 1ity_A TRF1; helix-turn-helix, 99.4 4.4E-13 1.5E-17 98.7 4.9 64 20-90 3-68 (69)
38 2ckx_A NGTRF1, telomere bindin 99.4 1E-12 3.4E-17 100.7 7.0 49 87-135 1-54 (83)
39 2juh_A Telomere binding protei 99.3 1.2E-12 4.2E-17 106.8 7.0 55 80-134 11-70 (121)
40 1ign_A Protein (RAP1); RAP1,ye 99.3 6.2E-13 2.1E-17 119.4 5.6 55 82-136 4-64 (246)
41 2din_A Cell division cycle 5-l 99.3 1.8E-13 6E-18 100.0 1.4 60 20-88 2-61 (66)
42 2aje_A Telomere repeat-binding 99.3 2.4E-12 8.3E-17 102.7 6.9 54 81-134 8-66 (105)
43 2cjj_A Radialis; plant develop 99.3 3.9E-12 1.3E-16 99.4 7.5 53 85-137 7-63 (93)
44 2yum_A ZZZ3 protein, zinc fing 99.3 2E-12 6.7E-17 96.5 3.4 62 22-88 3-67 (75)
45 1x41_A Transcriptional adaptor 99.3 4.7E-12 1.6E-16 90.9 5.0 56 22-84 3-58 (60)
46 2roh_A RTBP1, telomere binding 99.2 1.1E-11 3.8E-16 101.3 6.8 53 82-134 27-84 (122)
47 3sjm_A Telomeric repeat-bindin 99.2 4E-12 1.4E-16 92.8 3.8 55 24-85 8-64 (64)
48 2llk_A Cyclin-D-binding MYB-li 99.2 2.1E-11 7.2E-16 91.2 5.1 64 14-87 10-73 (73)
49 3hm5_A DNA methyltransferase 1 99.2 5.9E-11 2E-15 92.6 7.5 66 70-139 18-88 (93)
50 2cu7_A KIAA1915 protein; nucle 99.2 1.4E-11 4.8E-16 91.4 3.3 59 20-86 2-60 (72)
51 2elk_A SPCC24B10.08C protein; 99.1 3.2E-11 1.1E-15 86.1 4.5 52 22-80 4-56 (58)
52 1w0t_A Telomeric repeat bindin 99.1 5E-11 1.7E-15 83.3 3.9 49 26-81 1-51 (53)
53 2eqr_A N-COR1, N-COR, nuclear 99.0 4.7E-10 1.6E-14 80.8 6.1 48 85-132 11-58 (61)
54 2ckx_A NGTRF1, telomere bindin 98.9 1.7E-09 5.8E-14 82.7 6.9 68 29-103 2-79 (83)
55 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.4E-09 4.7E-14 81.1 5.9 51 82-133 4-58 (72)
56 2aje_A Telomere repeat-binding 98.8 2.5E-09 8.6E-14 85.2 5.1 79 21-106 7-95 (105)
57 2ltp_A Nuclear receptor corepr 98.3 4.6E-10 1.6E-14 86.7 0.0 55 19-81 8-62 (89)
58 2cqr_A RSGI RUH-043, DNAJ homo 98.8 2.6E-09 9E-14 79.8 2.5 56 21-81 12-68 (73)
59 2iw5_B Protein corest, REST co 98.7 1.2E-08 4.3E-13 90.9 5.3 48 86-133 133-180 (235)
60 2yus_A SWI/SNF-related matrix- 98.7 9.4E-09 3.2E-13 77.8 3.4 50 22-79 13-62 (79)
61 1wgx_A KIAA1903 protein; MYB D 98.6 5.6E-08 1.9E-12 72.6 5.0 48 86-133 8-59 (73)
62 2cjj_A Radialis; plant develop 98.5 7.3E-08 2.5E-12 75.1 3.2 49 27-80 8-57 (93)
63 1fex_A TRF2-interacting telome 98.4 2.8E-07 9.6E-12 66.0 5.3 47 86-132 2-58 (59)
64 1ug2_A 2610100B20RIK gene prod 98.3 5.7E-07 1.9E-11 69.5 5.4 48 88-135 35-85 (95)
65 2lr8_A CAsp8-associated protei 97.6 1E-07 3.4E-12 69.9 0.0 45 88-133 16-63 (70)
66 4iej_A DNA methyltransferase 1 98.1 7E-06 2.4E-10 63.8 7.9 62 74-139 22-88 (93)
67 2yqk_A Arginine-glutamic acid 98.1 6.9E-06 2.4E-10 59.3 6.7 49 81-129 4-53 (63)
68 4eef_G F-HB80.4, designed hema 97.9 1.8E-06 6.2E-11 64.3 0.9 43 86-128 20-66 (74)
69 2eqr_A N-COR1, N-COR, nuclear 97.7 3.5E-05 1.2E-09 55.0 4.2 47 25-79 10-56 (61)
70 4a69_C Nuclear receptor corepr 97.6 0.00011 3.7E-09 57.1 5.9 44 86-129 43-86 (94)
71 1fex_A TRF2-interacting telome 97.5 3.3E-05 1.1E-09 55.1 2.2 51 27-81 2-58 (59)
72 2xag_B REST corepressor 1; ami 97.5 7.3E-05 2.5E-09 73.3 5.3 48 86-133 380-427 (482)
73 1wgx_A KIAA1903 protein; MYB D 97.5 6.9E-05 2.3E-09 55.8 3.2 49 28-81 9-58 (73)
74 2crg_A Metastasis associated p 97.5 0.00027 9.2E-09 51.9 6.4 43 86-128 8-51 (70)
75 2cqq_A RSGI RUH-037, DNAJ homo 97.4 6.1E-05 2.1E-09 55.8 2.7 51 25-81 6-57 (72)
76 2ebi_A DNA binding protein GT- 97.2 0.00044 1.5E-08 52.2 5.4 51 86-136 4-68 (86)
77 1x58_A Hypothetical protein 49 97.1 0.00029 9.9E-09 50.8 2.9 48 26-81 7-57 (62)
78 2iw5_B Protein corest, REST co 97.1 0.0004 1.4E-08 61.9 4.4 49 25-81 131-179 (235)
79 1ofc_X ISWI protein; nuclear p 96.4 0.016 5.5E-07 53.7 10.1 87 48-134 124-276 (304)
80 4eef_G F-HB80.4, designed hema 95.8 0.0022 7.6E-08 47.6 1.0 45 28-77 21-66 (74)
81 2ebi_A DNA binding protein GT- 94.6 0.018 6.3E-07 43.1 2.7 27 54-80 33-63 (86)
82 2xag_B REST corepressor 1; ami 94.0 0.039 1.3E-06 54.1 4.2 45 27-79 380-424 (482)
83 2yqk_A Arginine-glutamic acid 93.7 0.051 1.8E-06 38.7 3.5 48 22-77 4-52 (63)
84 3hm5_A DNA methyltransferase 1 93.1 0.065 2.2E-06 41.4 3.3 56 13-80 20-80 (93)
85 1irz_A ARR10-B; helix-turn-hel 92.9 0.33 1.1E-05 34.9 6.6 47 84-130 5-56 (64)
86 4a69_C Nuclear receptor corepr 91.9 0.11 3.8E-06 39.9 3.3 25 53-77 61-85 (94)
87 1ofc_X ISWI protein; nuclear p 91.8 0.28 9.7E-06 45.4 6.5 48 86-133 110-158 (304)
88 4b4c_A Chromodomain-helicase-D 91.5 0.44 1.5E-05 40.8 7.0 47 87-133 135-196 (211)
89 4b4c_A Chromodomain-helicase-D 90.9 0.39 1.3E-05 41.1 6.1 50 85-134 6-60 (211)
90 2y9y_A Imitation switch protei 89.8 0.38 1.3E-05 45.7 5.4 53 85-137 227-295 (374)
91 2crg_A Metastasis associated p 86.1 0.57 2E-05 33.9 3.2 24 54-77 27-51 (70)
92 1ug2_A 2610100B20RIK gene prod 84.7 1.9 6.6E-05 33.1 5.7 26 53-78 54-79 (95)
93 2xb0_X Chromo domain-containin 82.7 0.83 2.8E-05 41.5 3.5 27 87-113 169-196 (270)
94 2lr8_A CAsp8-associated protei 81.1 0.35 1.2E-05 35.3 0.0 47 28-80 15-61 (70)
95 2xb0_X Chromo domain-containin 77.1 6 0.00021 35.8 7.3 48 86-133 3-55 (270)
96 2o8x_A Probable RNA polymerase 63.8 8.2 0.00028 26.0 4.0 44 89-134 16-59 (70)
97 2cxy_A BAF250B subunit, HBAF25 62.7 23 0.00078 27.9 6.9 43 95-137 54-108 (125)
98 2li6_A SWI/SNF chromatin-remod 61.4 6.5 0.00022 30.8 3.4 39 96-134 53-99 (116)
99 1ku3_A Sigma factor SIGA; heli 59.8 11 0.00036 26.2 4.1 43 92-135 13-59 (73)
100 2lm1_A Lysine-specific demethy 59.4 14 0.00048 28.1 5.0 40 95-134 47-98 (107)
101 2p1m_A SKP1-like protein 1A; F 58.2 11 0.00039 30.7 4.6 35 58-99 119-153 (160)
102 2jrz_A Histone demethylase jar 56.9 13 0.00045 29.0 4.5 43 95-137 43-97 (117)
103 3hug_A RNA polymerase sigma fa 56.5 15 0.00052 26.6 4.6 42 92-134 40-81 (92)
104 2p7v_B Sigma-70, RNA polymeras 56.2 9.9 0.00034 26.0 3.3 42 92-134 8-53 (68)
105 2eqy_A RBP2 like, jumonji, at 52.2 69 0.0024 25.0 8.1 44 95-138 45-100 (122)
106 1kkx_A Transcription regulator 52.1 8.7 0.0003 30.5 2.7 41 96-136 52-100 (123)
107 4iej_A DNA methyltransferase 1 51.8 18 0.00061 27.7 4.3 48 25-80 28-80 (93)
108 2y9y_A Imitation switch protei 51.7 24 0.00083 33.3 6.2 45 86-130 123-169 (374)
109 3v7d_A Suppressor of kinetocho 49.4 20 0.00068 29.7 4.7 34 58-98 127-160 (169)
110 2jxj_A Histone demethylase jar 48.2 11 0.00036 28.3 2.5 39 95-133 39-89 (96)
111 1c20_A DEAD ringer protein; DN 47.1 21 0.00071 28.2 4.3 44 95-138 55-111 (128)
112 1x3u_A Transcriptional regulat 46.9 37 0.0013 23.3 5.2 42 89-133 17-58 (79)
113 2rq5_A Protein jumonji; develo 46.0 21 0.00073 28.3 4.1 39 95-133 45-96 (121)
114 3c57_A Two component transcrip 45.2 33 0.0011 25.2 4.9 44 88-134 27-70 (95)
115 3ulq_B Transcriptional regulat 44.0 43 0.0015 24.5 5.4 47 85-134 26-72 (90)
116 2jrz_A Histone demethylase jar 43.9 16 0.00054 28.6 3.0 41 42-82 42-93 (117)
117 2kk0_A AT-rich interactive dom 43.4 29 0.001 28.1 4.7 43 95-137 67-122 (145)
118 1je8_A Nitrate/nitrite respons 42.6 34 0.0012 24.3 4.5 43 88-133 21-63 (82)
119 1or7_A Sigma-24, RNA polymeras 42.2 40 0.0014 26.8 5.4 34 100-134 151-184 (194)
120 2ast_A S-phase kinase-associat 41.5 21 0.00073 28.9 3.6 34 59-99 121-154 (159)
121 2rq5_A Protein jumonji; develo 40.6 45 0.0015 26.3 5.3 58 42-102 44-113 (121)
122 2yqf_A Ankyrin-1; death domain 39.2 65 0.0022 24.5 5.9 37 88-125 12-48 (111)
123 2jpc_A SSRB; DNA binding prote 39.2 49 0.0017 21.5 4.6 39 94-134 3-41 (61)
124 2q1z_A RPOE, ECF SIGE; ECF sig 39.2 26 0.00089 27.8 3.8 41 93-134 139-179 (184)
125 2eqy_A RBP2 like, jumonji, at 39.2 25 0.00086 27.6 3.6 41 42-82 44-95 (122)
126 1ig6_A MRF-2, modulator recogn 39.1 32 0.0011 26.1 4.1 40 95-134 36-88 (107)
127 1fse_A GERE; helix-turn-helix 38.9 45 0.0015 22.4 4.5 44 87-133 10-53 (74)
128 1tty_A Sigma-A, RNA polymerase 37.8 36 0.0012 24.3 4.1 41 93-134 22-66 (87)
129 2cxy_A BAF250B subunit, HBAF25 36.6 23 0.00078 27.9 2.9 41 42-82 53-104 (125)
130 1c20_A DEAD ringer protein; DN 36.5 36 0.0012 26.8 4.1 41 42-82 54-106 (128)
131 2kk0_A AT-rich interactive dom 36.2 70 0.0024 25.8 5.9 57 42-98 66-136 (145)
132 2li6_A SWI/SNF chromatin-remod 35.8 25 0.00086 27.3 3.0 28 55-82 71-98 (116)
133 2lm1_A Lysine-specific demethy 35.2 25 0.00087 26.6 2.9 41 42-82 46-97 (107)
134 2rnj_A Response regulator prot 34.4 43 0.0015 24.1 4.0 43 88-133 29-71 (91)
135 1xsv_A Hypothetical UPF0122 pr 34.1 70 0.0024 24.3 5.4 41 93-134 29-69 (113)
136 1kkx_A Transcription regulator 34.0 18 0.00062 28.6 1.9 41 42-82 50-97 (123)
137 1rp3_A RNA polymerase sigma fa 32.3 66 0.0022 26.2 5.3 41 93-134 191-231 (239)
138 3mzy_A RNA polymerase sigma-H 32.2 56 0.0019 24.9 4.6 32 102-134 121-152 (164)
139 2lfw_A PHYR sigma-like domain; 32.0 33 0.0011 27.0 3.3 42 92-134 96-137 (157)
140 2of5_H Leucine-rich repeat and 31.9 42 0.0014 26.0 3.8 31 94-125 13-43 (118)
141 2o71_A Death domain-containing 31.4 50 0.0017 25.7 4.1 42 79-124 12-53 (115)
142 2lt8_A Eurocin; A/B-fold, cyst 31.3 12 0.00042 23.8 0.4 15 4-18 18-32 (42)
143 2of5_A Death domain-containing 30.8 46 0.0016 25.8 3.8 43 79-125 12-54 (114)
144 3i4p_A Transcriptional regulat 28.5 52 0.0018 26.3 3.9 43 92-135 3-46 (162)
145 1wxp_A THO complex subunit 1; 26.4 72 0.0025 24.2 4.2 31 94-125 18-48 (110)
146 3cz6_A DNA-binding protein RAP 26.3 1.3E+02 0.0044 25.3 5.9 59 40-98 64-126 (168)
147 1p4w_A RCSB; solution structur 25.5 2E+02 0.007 21.2 6.9 46 86-134 32-77 (99)
148 1s7o_A Hypothetical UPF0122 pr 24.6 1.1E+02 0.0038 23.3 5.0 43 89-133 23-65 (113)
149 2dbb_A Putative HTH-type trans 24.0 1.4E+02 0.0047 23.1 5.6 43 92-135 9-52 (151)
150 1fad_A Protein (FADD protein); 21.4 75 0.0026 23.4 3.3 33 92-125 12-44 (99)
151 2e1c_A Putative HTH-type trans 20.5 1.2E+02 0.0041 24.6 4.7 42 92-134 27-69 (171)
152 2dn0_A Zinc fingers and homeob 20.3 1.7E+02 0.0058 20.3 4.9 50 79-129 5-58 (76)
No 1
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=7.2e-36 Score=245.47 Aligned_cols=124 Identities=31% Similarity=0.517 Sum_probs=96.6
Q ss_pred CCCccccccccccccccccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCC
Q 023677 4 AGGHTAGELCAAVWRSALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPG 83 (279)
Q Consensus 4 ~gg~~~g~~C~~rW~~~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~ 83 (279)
+...+++.||+.||.+.|+|.+++++||.+||.. |..++.. +|..+|.+||..+++||++||++||.++|+|.
T Consensus 4 ~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~-----L~~~v~~--~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~ 76 (128)
T 1h8a_C 4 VIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQR-----VIEHVQK--YGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE 76 (128)
T ss_dssp ------------------CTTCCCSCCCHHHHHH-----HHHHHHH--TCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS
T ss_pred ccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHH-----HHHHHHH--HCCCCHHHHHHHhcCCcHHHHHHHHHHhcccc
Confidence 3456899999999999999999999999888874 3334433 45568999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 84 LKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 84 l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
+++++||+|||.+|+++|.+||++|+.||++|||||+++|+|||+.+++++
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999999875
No 2
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=100.00 E-value=1.1e-33 Score=240.32 Aligned_cols=121 Identities=32% Similarity=0.544 Sum_probs=106.2
Q ss_pred ccccccccccccccccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCC
Q 023677 7 HTAGELCAAVWRSALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKR 86 (279)
Q Consensus 7 ~~~g~~C~~rW~~~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~k 86 (279)
.+++.||+.||.+.|+|.+++++||.+||.. |..++.. +|..+|.+||..|++||+.||++||.++|+|.+++
T Consensus 38 ~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~-----L~~~v~~--~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 110 (159)
T 1h89_C 38 NRTDVQCQHRWQKVLNPELIKGPWTKEEDQR-----VIKLVQK--YGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKK 110 (159)
T ss_dssp -----CHHHHHHTTTCTTCCCSCCCHHHHHH-----HHHHHHH--HCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCC
T ss_pred CCCHHHHHHHHHHccCCCcCCCCCChHHHHH-----HHHHHHH--hCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccc
Confidence 5889999999999999999999999887774 3334333 35568999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 87 GKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 87 g~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
++||+|||.+|+++|.+||++|+.||++|||||+++|||||+.++|++
T Consensus 111 ~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 111 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred cCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999999875
No 3
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.97 E-value=4.8e-32 Score=216.57 Aligned_cols=105 Identities=25% Similarity=0.561 Sum_probs=94.1
Q ss_pred ccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcC
Q 023677 27 SFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGN 106 (279)
Q Consensus 27 k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~lv~~~G~ 106 (279)
++.||.+||. +|..++.. +|..+|.+||..|++||++||++||.++|+|++++++||+|||.+|+++|.+||+
T Consensus 1 K~~Wt~eED~-----~L~~~v~~--~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~ 73 (107)
T 2k9n_A 1 KVKFTEEEDL-----KLQQLVMR--YGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGP 73 (107)
T ss_dssp CCSSCHHHHH-----HHHHHHHH--HCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHH-----HHHHHHHH--HCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCc
Confidence 5789887777 45555544 3456999999999999999999999999999999999999999999999999999
Q ss_pred chhHHhhhCCCCCHHHHHHHHHHHhhHHHHhh
Q 023677 107 RWSRIARKLPGRTDNEIKNYWRTHMRKKAQER 138 (279)
Q Consensus 107 ~W~~Ia~~lpgRT~~q~knRw~~llr~~~~~~ 138 (279)
+|+.||++|||||+++|+|||+.++++..+..
T Consensus 74 ~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~~ 105 (107)
T 2k9n_A 74 KWNKISKFLKNRSDNNIRNRWMMIARHRAKHQ 105 (107)
T ss_dssp CHHHHHHHHSSSCHHHHHHHHHHHHHHHHSST
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhhHHHhh
Confidence 99999999999999999999999999876544
No 4
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.97 E-value=7.3e-32 Score=214.20 Aligned_cols=104 Identities=35% Similarity=0.558 Sum_probs=92.9
Q ss_pred cccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 023677 24 YCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAK 103 (279)
Q Consensus 24 ~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~lv~~ 103 (279)
.|++++||.+||.. |..++.. +|..+|.+||..|++||++||++||.++|+|.+++++||+|||.+|+++|.+
T Consensus 1 ~l~k~~WT~eED~~-----L~~~v~~--~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~ 73 (105)
T 1gv2_A 1 ELIKGPWTKEEDQR-----VIKLVQK--YGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKR 73 (105)
T ss_dssp CCCCSCCCHHHHHH-----HHHHHHH--HCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHH-----HHHHHHH--hCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHH
Confidence 37899999888774 4444444 3456899999999999999999999999999999999999999999999999
Q ss_pred hcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 104 WGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 104 ~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
||++|+.||++|||||+++|+|||+.+++++
T Consensus 74 ~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 74 LGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HSSCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred hCCCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999876
No 5
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.97 E-value=1.2e-30 Score=214.17 Aligned_cols=106 Identities=29% Similarity=0.487 Sum_probs=95.0
Q ss_pred ccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHH
Q 023677 21 LGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLEL 100 (279)
Q Consensus 21 l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~l 100 (279)
....++++.||.+||.. |..++..+ |. +|.+||..+++|+++|||+||.++|+|.+++++||+|||.+|+++
T Consensus 5 ~~~~~kk~~WT~eED~~-----L~~~v~~~--G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~ 76 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEM-----LKRAVAQH--GS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQK 76 (126)
T ss_dssp C-CBCSSCCCCHHHHHH-----HHHHHHHH--TT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHH-----HHHHHHHh--CC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHH
Confidence 35678999999888774 55555444 33 999999999999999999999999999999999999999999999
Q ss_pred HHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 101 HAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 101 v~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
|.+||++|+.||++|||||+++||+||+.++++.
T Consensus 77 v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 77 IQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999874
No 6
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.97 E-value=8.9e-31 Score=216.18 Aligned_cols=104 Identities=34% Similarity=0.588 Sum_probs=93.7
Q ss_pred cccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhc
Q 023677 26 ESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWG 105 (279)
Q Consensus 26 ~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~lv~~~G 105 (279)
.+|+||.+||. +|..++..+ |..+|.+||..|++||++||++||.++|+|.+++++||+|||.+|+++|.+||
T Consensus 1 vKg~Wt~eED~-----~L~~~v~~~--g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G 73 (131)
T 3zqc_A 1 MKGPFTEAEDD-----LIREYVKEN--GPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLG 73 (131)
T ss_dssp CCSSCCHHHHH-----HHHHHHHHH--CSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHH-----HHHHHHHHh--CcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHC
Confidence 37899988777 455555543 44699999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhhhCCCCCHHHHHHHHHHHhhHHHH
Q 023677 106 NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 136 (279)
Q Consensus 106 ~~W~~Ia~~lpgRT~~q~knRw~~llr~~~~ 136 (279)
++|+.||++|||||+++|+|||+++++++..
T Consensus 74 ~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~ 104 (131)
T 3zqc_A 74 SKWSVIAKLIPGRTDNAIKNRWNSSISKRIS 104 (131)
T ss_dssp SCHHHHTTTSTTCCHHHHHHHHHHTTGGGCC
T ss_pred cCHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998744
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.93 E-value=4.1e-27 Score=199.69 Aligned_cols=102 Identities=26% Similarity=0.504 Sum_probs=60.1
Q ss_pred cccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHH
Q 023677 24 YCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAK 103 (279)
Q Consensus 24 ~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~lv~~ 103 (279)
.+.++.||.+||.. |..++.. +|..+|..||..+++|+++||++||.++|+|.+++++||+|||.+|+++|.+
T Consensus 3 ~~~k~~Wt~eED~~-----L~~~v~~--~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~ 75 (159)
T 1h89_C 3 HLGKTRWTREEDEK-----LKKLVEQ--NGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQK 75 (159)
T ss_dssp -----------------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHH-----HHHHHHH--hCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHH
Confidence 36789999999885 4444433 3456999999999999999999999999999999999999999999999999
Q ss_pred hcC-chhHHhhhCCCCCHHHHHHHHHHHhh
Q 023677 104 WGN-RWSRIARKLPGRTDNEIKNYWRTHMR 132 (279)
Q Consensus 104 ~G~-~W~~Ia~~lpgRT~~q~knRw~~llr 132 (279)
||. +|..||..|||||+.||++||+++|+
T Consensus 76 ~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 105 (159)
T 1h89_C 76 YGPKRWSVIAKHLKGRIGKQCRERWHNHLN 105 (159)
T ss_dssp HCSCCHHHHHHTSTTCCHHHHHHHHHHTTC
T ss_pred hCcccHHHHHHHcCCCCHHHHHHHHHHHhC
Confidence 996 69999999999999999999998875
No 8
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.87 E-value=5.4e-23 Score=168.63 Aligned_cols=73 Identities=37% Similarity=0.709 Sum_probs=50.1
Q ss_pred HHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcC-chhHHhhhCCCCCHHHHHHHHHHHhh
Q 023677 60 YFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMR 132 (279)
Q Consensus 60 IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~llr 132 (279)
||..|++||++||++||.++|+|++++++||+|||++|+++|.+||. +|..||..|||||+.||++||+.+|+
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 78999999999999999999999999999999999999999999996 69999999999999999999998775
No 9
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.80 E-value=2.8e-20 Score=139.69 Aligned_cols=59 Identities=29% Similarity=0.411 Sum_probs=48.1
Q ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhh
Q 023677 73 RLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR 132 (279)
Q Consensus 73 r~RW~n~L~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr 132 (279)
--||.|+|+|++++++||+|||++|+++|.+||++|++||+.| |||++||||||+.+.+
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999999999999999 9999999999997644
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-18 Score=127.31 Aligned_cols=60 Identities=23% Similarity=0.285 Sum_probs=56.7
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHHHHhhh
Q 023677 79 YLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQERK 139 (279)
Q Consensus 79 ~L~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~~~~~~ 139 (279)
+|+|.+++++||+|||.+|+++|.+||++|.+||. |+|||++|||+||+.+|++..+...
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 79999999999999999999999999999999999 8899999999999999999876543
No 11
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=8e-19 Score=129.95 Aligned_cols=67 Identities=12% Similarity=0.248 Sum_probs=57.6
Q ss_pred ccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHH
Q 023677 21 LGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEE 94 (279)
Q Consensus 21 l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED 94 (279)
-.+.++++.|+.+||.. |..++.. +|..+|.+||..|++||++|||+||.++|+|.|++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~-----L~~~v~~--~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEI-----LKAAVMK--YGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHH-----HHHHHHH--TCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHH-----HHHHHHH--HCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46789999999887774 4444444 3446999999999999999999999999999999999999998
No 12
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.72 E-value=7.1e-18 Score=125.65 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=55.0
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHHHHh
Q 023677 80 LHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKAQE 137 (279)
Q Consensus 80 L~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~~~~ 137 (279)
++|.+++++||+|||.+|+++|.+||++|..||++|||||++|||+||+.++++..+.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999987544
No 13
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=3.2e-17 Score=117.75 Aligned_cols=54 Identities=22% Similarity=0.416 Sum_probs=51.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc-CchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 81 HPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 81 ~P~l~kg~WT~eED~~Ll~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
+|.+++++||+|||++|+++|.+|| ++|.+||.+|+|||+.||++||+++|++.
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~ 57 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGP 57 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCc
Confidence 6899999999999999999999999 59999999999999999999999998864
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=7e-17 Score=112.68 Aligned_cols=50 Identities=28% Similarity=0.522 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC-chhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 84 LKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 84 l~kg~WT~eED~~Ll~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
|++++||+|||.+|+++|.+||. +|..||.+|+|||+.||++||+++|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57899999999999999999998 999999999999999999999999874
No 15
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.66 E-value=1.2e-16 Score=143.45 Aligned_cols=107 Identities=17% Similarity=0.189 Sum_probs=86.8
Q ss_pred ccccccccccCcccchHHHHHHHHHhhhhc---CCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCC--------------
Q 023677 23 FYCESFRFEGGGRQYNRGRLFRRYTNFRRS---NSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLK-------------- 85 (279)
Q Consensus 23 ~~l~k~~wt~~ed~~~~~~llr~l~~~~~~---g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~-------------- 85 (279)
..+.++.||.+||.. |..++..++. +...|.+||..|+|||+.|||.||.++|.+.|.
T Consensus 4 ~~~~k~~FT~EED~~-----Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d 78 (246)
T 1ign_A 4 PSHNKASFTDEEDEF-----ILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRD 78 (246)
T ss_dssp ----CCCCCHHHHHH-----HHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBC
T ss_pred CCCCCCCCCHHHHHH-----HHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhc
Confidence 457788999888774 3333333332 334599999999999999999999999999997
Q ss_pred ---------------CCCCCHHHHHHHHHHHHH-h--------------------------------cC-----------
Q 023677 86 ---------------RGKMTPQEERLVLELHAK-W--------------------------------GN----------- 106 (279)
Q Consensus 86 ---------------kg~WT~eED~~Ll~lv~~-~--------------------------------G~----------- 106 (279)
+..||.+||-.|+..+.+ | |.
T Consensus 79 ~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 158 (246)
T 1ign_A 79 DDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFA 158 (246)
T ss_dssp TTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-----------------------------
T ss_pred cCCCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchh
Confidence 899999999999999977 2 11
Q ss_pred --------------chhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 107 --------------RWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 107 --------------~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
.|..||+.+|+||++.+|+||+.+|+..
T Consensus 159 ~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 159 AYRTQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp --CCCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred hhccccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999999876
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.65 E-value=1.3e-16 Score=111.32 Aligned_cols=50 Identities=34% Similarity=0.729 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC-chhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 84 LKRGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 84 l~kg~WT~eED~~Ll~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
|++++||+|||.+|+++|.+||. +|.+||..|+|||+.||++||+++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 57999999999999999999997 699999999999999999999998864
No 17
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=3.1e-16 Score=110.06 Aligned_cols=50 Identities=30% Similarity=0.446 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-CchhHHhhhCC--CCCHHHHHHHHHHHhhHH
Q 023677 85 KRGKMTPQEERLVLELHAKWG-NRWSRIARKLP--GRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 85 ~kg~WT~eED~~Ll~lv~~~G-~~W~~Ia~~lp--gRT~~q~knRw~~llr~~ 134 (279)
++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||++++|.+
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k 53 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence 578999999999999999999 69999999999 999999999999999853
No 18
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=3.9e-16 Score=112.34 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=50.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc-CchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 81 HPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 81 ~P~l~kg~WT~eED~~Ll~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
.|.+.+++||+|||.+|+++|.+|| ++|.+||++|+|||+.||++||+++|..
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4789999999999999999999999 7999999999999999999999988764
No 19
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.62 E-value=6.7e-16 Score=113.91 Aligned_cols=58 Identities=28% Similarity=0.365 Sum_probs=53.4
Q ss_pred HhcCCCCCCCCCCHHHHHHHHHHHHHhc-CchhHHhhhCC--CCCHHHHHHHHHHHhhHHH
Q 023677 78 NYLHPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLP--GRTDNEIKNYWRTHMRKKA 135 (279)
Q Consensus 78 n~L~P~l~kg~WT~eED~~Ll~lv~~~G-~~W~~Ia~~lp--gRT~~q~knRw~~llr~~~ 135 (279)
+..+|..++++||+|||++|+++|.+|| ++|..||..|+ |||+.||++||+++|++..
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCC
Confidence 3567889999999999999999999999 69999999999 9999999999999999753
No 20
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-16 Score=116.55 Aligned_cols=56 Identities=25% Similarity=0.431 Sum_probs=52.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc-CchhHHhhhCCCCCHHHHHHHHHHHhhHHHH
Q 023677 81 HPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 136 (279)
Q Consensus 81 ~P~l~kg~WT~eED~~Ll~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~llr~~~~ 136 (279)
.|.+++++||+|||++|+++|.+|| ++|..||.+|+|||+.||++||+++|++..+
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence 5789999999999999999999999 7999999999999999999999999987543
No 21
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=5.9e-16 Score=115.79 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=52.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc------CchhHHhhhCCCCCHHHHHHHHHHHhhHHHH
Q 023677 81 HPGLKRGKMTPQEERLVLELHAKWG------NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 136 (279)
Q Consensus 81 ~P~l~kg~WT~eED~~Ll~lv~~~G------~~W~~Ia~~lpgRT~~q~knRw~~llr~~~~ 136 (279)
+|.+.+++||+|||.+|+++|.+|| ++|.+||.+|+|||+.||++||+++|++..+
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999 7999999999999999999999999987543
No 22
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-16 Score=123.43 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=53.8
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 79 YLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 79 ~L~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
.++|.+++++||+|||.+|+++|.+||++|..||.+|+|||++||+|||++++++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 57899999999999999999999999999999999999999999999999999875
No 23
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.57 E-value=3.3e-15 Score=106.90 Aligned_cols=52 Identities=19% Similarity=0.283 Sum_probs=47.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhc-CchhHHhhhCC-CCCHHHHHHHHHHHh
Q 023677 80 LHPGLKRGKMTPQEERLVLELHAKWG-NRWSRIARKLP-GRTDNEIKNYWRTHM 131 (279)
Q Consensus 80 L~P~l~kg~WT~eED~~Ll~lv~~~G-~~W~~Ia~~lp-gRT~~q~knRw~~ll 131 (279)
++..+.+++||++||.+|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 34567899999999999999999999 89999999999 999999999998764
No 24
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=4.9e-15 Score=108.24 Aligned_cols=51 Identities=35% Similarity=0.542 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CchhHHhhhCC--CCCHHHHHHHHHHHhhHH
Q 023677 84 LKRGKMTPQEERLVLELHAKWG-NRWSRIARKLP--GRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 84 l~kg~WT~eED~~Ll~lv~~~G-~~W~~Ia~~lp--gRT~~q~knRw~~llr~~ 134 (279)
.++++||+|||++|+++|.+|| .+|..||+.++ |||+.||++||++++|..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccC
Confidence 4789999999999999999999 58999999865 999999999999998864
No 25
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.51 E-value=2.2e-15 Score=123.84 Aligned_cols=97 Identities=13% Similarity=0.211 Sum_probs=68.9
Q ss_pred ccccccccccccccccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCC
Q 023677 7 HTAGELCAAVWRSALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKR 86 (279)
Q Consensus 7 ~~~g~~C~~rW~~~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~k 86 (279)
.+++.||+.||.+.|+|.++++.||.+||.. |+.++..+ +.+|.+||..|+|||+.||+.||.++|++.+..
T Consensus 34 ~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~----L~~~~~~~----G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 34 NRSPKQCRERWFNHLDPAVVKHAWTPEEDET----IFRNYLKL----GSKWSVIAKLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHH----HHHHHHHS----CSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred CCCHHHHHHHHhhccCccccCCCCCHHHHHH----HHHHHHHH----CcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 4889999999999999999999999888874 33333332 358999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhcCchhHHhhhC
Q 023677 87 GKMTPQEERLVLELHAKWGNRWSRIARKL 115 (279)
Q Consensus 87 g~WT~eED~~Ll~lv~~~G~~W~~Ia~~l 115 (279)
++|+.+- +......+.+|..|++.|
T Consensus 106 ~~~~~~~----~~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 106 NSNHKEI----LLPDRSKKRKAADVPKKL 130 (131)
T ss_dssp CTTSCCC----CCCCCC------------
T ss_pred CCCcccc----cCchhhhhhhhhhcchhc
Confidence 9987653 111122345677777765
No 26
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.48 E-value=2.9e-14 Score=116.38 Aligned_cols=85 Identities=18% Similarity=0.192 Sum_probs=73.4
Q ss_pred ccccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHc----CCCCHHHHHHHHHHhcC-----CCCCCC-C
Q 023677 19 SALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVG----LNRTGKSCRLRWVNYLH-----PGLKRG-K 88 (279)
Q Consensus 19 ~~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~----~~Rt~~QCr~RW~n~L~-----P~l~kg-~ 88 (279)
..+....++++||.+||. +|...+..++. .+|.+|+..+ ++||+.||++||.|+|+ |.++++ +
T Consensus 9 ~~~~~rr~r~~WT~EEd~-----~L~~gV~k~G~--G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~ 81 (121)
T 2juh_A 9 SELSQRRIRRPFSVAEVE-----ALVEAVEHLGT--GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEP 81 (121)
T ss_dssp CCCCCCCSSCCCCHHHHH-----HHHHHHHHHGG--GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSC
T ss_pred ccccCCCCCCCCCHHHHH-----HHHHHHHHHCC--CCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCC
Confidence 457889999999987776 45555555444 4999999984 89999999999999999 999999 9
Q ss_pred CCHHHHHHHHHHHHHhcCchhH
Q 023677 89 MTPQEERLVLELHAKWGNRWSR 110 (279)
Q Consensus 89 WT~eED~~Ll~lv~~~G~~W~~ 110 (279)
|+++|+.+|++++..+|++|++
T Consensus 82 ~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 82 VPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHccchhc
Confidence 9999999999999999999977
No 27
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.48 E-value=4.5e-14 Score=105.80 Aligned_cols=52 Identities=13% Similarity=0.304 Sum_probs=48.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhc----CchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 82 PGLKRGKMTPQEERLVLELHAKWG----NRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 82 P~l~kg~WT~eED~~Ll~lv~~~G----~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
+.+.+++||.+||.+|++++.+|| ++|.+||.+|||||++||++||+.+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 567889999999999999999999 7899999999999999999999988763
No 28
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.46 E-value=4.8e-14 Score=101.04 Aligned_cols=57 Identities=14% Similarity=0.164 Sum_probs=47.4
Q ss_pred cccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCC
Q 023677 22 GFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLK 85 (279)
Q Consensus 22 ~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~ 85 (279)
++.++++.||.+||.. |..++.. +|..+|.+||..|++||+.||++||.++|+|.++
T Consensus 3 ~p~~~k~~Wt~eED~~-----L~~~v~~--~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQ-----LRALVRQ--FGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp SCCCCCSCCCHHHHHH-----HHHHHHH--TCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHH-----HHHHHHH--hCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence 5789999999888774 4444433 3446999999999999999999999999999986
No 29
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.43 E-value=6.1e-14 Score=97.72 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=42.5
Q ss_pred ccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCC
Q 023677 25 CESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPG 83 (279)
Q Consensus 25 l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~ 83 (279)
|++++||.+||.. |..++.. +|..+|.+||..|++||++|||+||.++|+|+
T Consensus 1 l~k~~Wt~eED~~-----L~~~v~~--~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQR-----LIKLVQK--YGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHH-----HHHHHHH--HCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHH-----HHHHHHH--HCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5789999888774 3334433 35568999999999999999999999999995
No 30
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.41 E-value=3.6e-13 Score=110.05 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=67.9
Q ss_pred cccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHc----CCCCHHHHHHHHHHhc-----CCCCCCCCCC
Q 023677 20 ALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVG----LNRTGKSCRLRWVNYL-----HPGLKRGKMT 90 (279)
Q Consensus 20 ~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~----~~Rt~~QCr~RW~n~L-----~P~l~kg~WT 90 (279)
......++++||.+||.. |...++.+ |..+|.+|+... ++||+.||++||.|+| +|.++++.|+
T Consensus 24 ~~~~rr~r~~WT~EEd~~-----L~~gV~k~--G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~ 96 (122)
T 2roh_A 24 DFGQRRIRRPFTVAEVEL-----LVEAVEHL--GTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPV 96 (122)
T ss_dssp CCCCCCCCCCCCHHHHHH-----HHHHHHHH--SSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSC
T ss_pred CcCCCCCCCCCCHHHHHH-----HHHHHHHH--CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCC
Confidence 356677899999877763 44555444 444999999964 8999999999999999 8999999999
Q ss_pred HHH-HHHHHHHHHHhcCc
Q 023677 91 PQE-ERLVLELHAKWGNR 107 (279)
Q Consensus 91 ~eE-D~~Ll~lv~~~G~~ 107 (279)
++| +.+|++++..||++
T Consensus 97 p~e~~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 97 PQELLDRVLAAQAYWSVD 114 (122)
T ss_dssp CHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHhhH
Confidence 999 89999999999985
No 31
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.39 E-value=1.6e-13 Score=95.53 Aligned_cols=52 Identities=17% Similarity=0.287 Sum_probs=41.2
Q ss_pred ccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCC
Q 023677 25 CESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPG 83 (279)
Q Consensus 25 l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~ 83 (279)
|++++||.+||.. |..++.. +|..+|.+||..|++||+.||++||.++|+|+
T Consensus 1 i~~~~Wt~eED~~-----L~~~v~~--~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEK-----LKKLVEQ--NGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHH-----HHHHHHH--HCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHH-----HHHHHHH--hCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence 5789999887774 4444444 34459999999999999999999999999995
No 32
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=103.78 Aligned_cols=48 Identities=21% Similarity=0.310 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHH
Q 023677 83 GLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTH 130 (279)
Q Consensus 83 ~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~l 130 (279)
...+++||+|||.+|+++|.+||++|.+||++|++||+.||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456889999999999999999999999999999999999999999765
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.39 E-value=1.3e-13 Score=108.80 Aligned_cols=69 Identities=10% Similarity=0.205 Sum_probs=57.2
Q ss_pred ccccccccccccccccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCC
Q 023677 7 HTAGELCAAVWRSALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPG 83 (279)
Q Consensus 7 ~~~g~~C~~rW~~~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~ 83 (279)
.+++.||+.||.+.|+|.+++++||.+||.. |+. ++..+ +.+|.+||..+||||+.||+.||..+|...
T Consensus 36 ~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~----L~~-~~~~~---G~~W~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 36 GRIGKQCRERWHNHLNPEVKKTSWTEEEDRI----IYQ-AHKRL---GNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHH----HHH-HHHHH---SSCHHHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHhccCCcccccCCCHHHHHH----HHH-HHHHh---CCCHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 5789999999999999999999999888764 333 33333 358999999999999999999999988753
No 34
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=5.5e-13 Score=96.61 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCchhHHh---hhCCCCCHHHHHHHHHHHhhH
Q 023677 84 LKRGKMTPQEERLVLELHAKWGNRWSRIA---RKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 84 l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia---~~lpgRT~~q~knRw~~llr~ 133 (279)
-++.+||+|||+.|++.|++||.+|+.|+ .++++||+.++|+||++++|+
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 46789999999999999999999999999 578999999999999999886
No 35
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.37 E-value=8.3e-14 Score=110.68 Aligned_cols=69 Identities=14% Similarity=0.225 Sum_probs=57.6
Q ss_pred ccccccccccccccccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCC
Q 023677 7 HTAGELCAAVWRSALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPG 83 (279)
Q Consensus 7 ~~~g~~C~~rW~~~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~ 83 (279)
.+++.||+.||.+.|+|.+++++||.+||.. |+.++..+ +.+|.+||..|+|||+.||+.||...+...
T Consensus 33 ~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~----L~~~~~~~----G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 33 TRNPRQCRERWNNYINPALRTDPWSPEEDML----LDQKYAEY----GPKWNKISKFLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHH----HHHHHHHT----CSCHHHHHHHHSSSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcccccccccCHHHHHH----HHHHHHHh----CcCHHHHHHHCCCCCHHHHHHHHHHHHhhH
Confidence 4789999999999999999999999888874 33333332 348999999999999999999999887653
No 36
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.37 E-value=3.4e-13 Score=110.14 Aligned_cols=53 Identities=25% Similarity=0.562 Sum_probs=49.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 81 HPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 81 ~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
.+.+++++||+|||++|+++|.+||.+|..||..|+|||+.||+.||+..|..
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 58 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAP 58 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTST
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccc
Confidence 46789999999999999999999999999999999999999999999998853
No 37
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.36 E-value=4.4e-13 Score=98.74 Aligned_cols=64 Identities=14% Similarity=-0.006 Sum_probs=52.2
Q ss_pred cccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcC--CCCHHHHHHHHHHhcCCCCCCCCCC
Q 023677 20 ALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGL--NRTGKSCRLRWVNYLHPGLKRGKMT 90 (279)
Q Consensus 20 ~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~--~Rt~~QCr~RW~n~L~P~l~kg~WT 90 (279)
...+..+++.||.+||.. |..++.. +|..+|.+||..++ +||+.||++||.++|+|.|.++..+
T Consensus 3 ~~~~~~~r~~WT~eED~~-----L~~~v~~--~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKN-----LRSGVRK--YGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CTTCSSSCCCCCHHHHHH-----HHHHHHH--HCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCCCHHHHHH-----HHHHHHH--HCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 356778999999887774 4444444 34469999999999 9999999999999999999998764
No 38
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.36 E-value=1e-12 Score=100.75 Aligned_cols=49 Identities=20% Similarity=0.421 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHhcC-chhHHhhh----CCCCCHHHHHHHHHHHhhHHH
Q 023677 87 GKMTPQEERLVLELHAKWGN-RWSRIARK----LPGRTDNEIKNYWRTHMRKKA 135 (279)
Q Consensus 87 g~WT~eED~~Ll~lv~~~G~-~W~~Ia~~----lpgRT~~q~knRw~~llr~~~ 135 (279)
.+||+|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhcc
Confidence 47999999999999999997 99999996 899999999999999998653
No 39
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.35 E-value=1.2e-12 Score=106.80 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=50.9
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcC-chhHHhhh----CCCCCHHHHHHHHHHHhhHH
Q 023677 80 LHPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARK----LPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 80 L~P~l~kg~WT~eED~~Ll~lv~~~G~-~W~~Ia~~----lpgRT~~q~knRw~~llr~~ 134 (279)
+.+..++++||+|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 567889999999999999999999997 99999997 49999999999999999863
No 40
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.34 E-value=6.2e-13 Score=119.39 Aligned_cols=55 Identities=24% Similarity=0.504 Sum_probs=48.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCc------hhHHhhhCCCCCHHHHHHHHHHHhhHHHH
Q 023677 82 PGLKRGKMTPQEERLVLELHAKWGNR------WSRIARKLPGRTDNEIKNYWRTHMRKKAQ 136 (279)
Q Consensus 82 P~l~kg~WT~eED~~Ll~lv~~~G~~------W~~Ia~~lpgRT~~q~knRw~~llr~~~~ 136 (279)
+.+++++||+|||++|+++|+++|++ |.+||++|||||+++|||||+.+|+++..
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 46789999999999999999999986 99999999999999999999999998644
No 41
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=1.8e-13 Score=99.95 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=49.0
Q ss_pred cccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCCCC
Q 023677 20 ALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKRGK 88 (279)
Q Consensus 20 ~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~ 88 (279)
.|+|.++++.||.+||.. |..++.. .| .+|.+||. ++|||++|||+||.++|+|.++++.
T Consensus 2 ~L~P~~~k~~WT~eED~~-----L~~~~~~--~g-~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEK-----LLHLAKL--MP-TQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CCSSSSSCCCCCHHHHHH-----HHHHHHH--CT-TCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCCHHHHHH-----HHHHHHH--cC-CCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 689999999999888864 3333333 33 39999999 8899999999999999999887764
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.31 E-value=2.4e-12 Score=102.65 Aligned_cols=54 Identities=20% Similarity=0.331 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcC-chhHHhhhC----CCCCHHHHHHHHHHHhhHH
Q 023677 81 HPGLKRGKMTPQEERLVLELHAKWGN-RWSRIARKL----PGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 81 ~P~l~kg~WT~eED~~Ll~lv~~~G~-~W~~Ia~~l----pgRT~~q~knRw~~llr~~ 134 (279)
.+..++++||+|||+.|+++|++||. +|+.|++.+ +|||+++||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 45678999999999999999999997 999999965 8999999999999999863
No 43
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.31 E-value=3.9e-12 Score=99.43 Aligned_cols=53 Identities=21% Similarity=0.372 Sum_probs=47.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CchhHHhhhCCCCCHHHHHHHHHHHhhHHHHh
Q 023677 85 KRGKMTPQEERLVLELHAKWG----NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQE 137 (279)
Q Consensus 85 ~kg~WT~eED~~Ll~lv~~~G----~~W~~Ia~~lpgRT~~q~knRw~~llr~~~~~ 137 (279)
.+++||.|||.+|++++.+|| ++|.+||..|||||+++|++||+.+++.....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 467999999999999999996 78999999999999999999999988775433
No 44
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.26 E-value=2e-12 Score=96.55 Aligned_cols=62 Identities=13% Similarity=-0.056 Sum_probs=49.9
Q ss_pred cccccccccccCcccchHHHHHHHHHhhhhcCC---cCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCCCC
Q 023677 22 GFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNS---FNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKRGK 88 (279)
Q Consensus 22 ~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~---~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~ 88 (279)
+|.+.++.||.+||.. |..++..++.+. .+|.+||.+|++||++||++||++||.+.+++|-
T Consensus 3 ~p~~~~~~WT~eEd~~-----L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKK-----LEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHH-----HHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHH-----HHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 5789999999887764 444444444322 7999999999999999999999999999887764
No 45
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.25 E-value=4.7e-12 Score=90.89 Aligned_cols=56 Identities=7% Similarity=-0.028 Sum_probs=44.6
Q ss_pred cccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCC
Q 023677 22 GFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGL 84 (279)
Q Consensus 22 ~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l 84 (279)
.+.+.++.|+.+||.. |..++.. +|..+|.+||..|++||++|||+||.++|.++.
T Consensus 3 s~~~~~~~WT~eED~~-----L~~~v~~--~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMA-----LLEAVMD--CGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCCSSSCHHHHHH-----HHHHHHH--TCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCCHHHHHH-----HHHHHHH--HCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 3678999999887774 3333333 344699999999999999999999999998753
No 46
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.23 E-value=1.1e-11 Score=101.27 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=48.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcC-chhHHhhh----CCCCCHHHHHHHHHHHhhHH
Q 023677 82 PGLKRGKMTPQEERLVLELHAKWGN-RWSRIARK----LPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 82 P~l~kg~WT~eED~~Ll~lv~~~G~-~W~~Ia~~----lpgRT~~q~knRw~~llr~~ 134 (279)
...++++||.|||+.|+++|++||. +|+.|++. |+|||+.+||+||+++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 4567889999999999999999997 99999996 49999999999999999864
No 47
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.23 E-value=4e-12 Score=92.75 Aligned_cols=55 Identities=13% Similarity=0.101 Sum_probs=43.0
Q ss_pred cccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcC--CCCHHHHHHHHHHhcCCCCC
Q 023677 24 YCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGL--NRTGKSCRLRWVNYLHPGLK 85 (279)
Q Consensus 24 ~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~--~Rt~~QCr~RW~n~L~P~l~ 85 (279)
..++++||.+||.. |..++..+ |..+|.+||..++ +||+.||++||.|+++|+|+
T Consensus 8 ~~kk~~WT~eED~~-----L~~~V~~~--G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 8 ITKKQKWTVEESEW-----VKAGVQKY--GEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp --CCCCCCHHHHHH-----HHHHHHHH--CTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCHHHHHH-----HHHHHHcc--CCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999887774 44455443 4458999999866 99999999999999999875
No 48
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.17 E-value=2.1e-11 Score=91.24 Aligned_cols=64 Identities=8% Similarity=-0.071 Sum_probs=42.0
Q ss_pred cccccccccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCCC
Q 023677 14 AAVWRSALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKRG 87 (279)
Q Consensus 14 ~~rW~~~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg 87 (279)
..||.+.|+|.+++++||.+||.. |..++...+ .+|.+||+.+ |||+.||+.||.. |....+.|
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~-----L~~l~~~~G---~kW~~IA~~l-gRt~~q~knRw~~-L~~~~~~G 73 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEK-----LKELRIKHG---NDWATIGAAL-GRSASSVKDRCRL-MKDTCNTG 73 (73)
T ss_dssp ---------CCCCCCSSCHHHHHH-----HHHHHHHHS---SCHHHHHHHH-TSCHHHHHHHHHH-CSCCCSCC
T ss_pred CcceeeecCCCCCCCCCCHHHHHH-----HHHHHHHHC---CCHHHHHHHh-CCCHHHHHHHHHH-HHHHccCC
Confidence 368999999999999999888774 333443333 3599999999 9999999999984 65555443
No 49
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.16 E-value=5.9e-11 Score=92.61 Aligned_cols=66 Identities=20% Similarity=0.271 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhC-----CCCCHHHHHHHHHHHhhHHHHhhh
Q 023677 70 KSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKL-----PGRTDNEIKNYWRTHMRKKAQERK 139 (279)
Q Consensus 70 ~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~l-----pgRT~~q~knRw~~llr~~~~~~~ 139 (279)
.=+.++|.++|.| .+||.||+..|++|+++||.+|..|+.++ ++||..++|+||..+.++..+.+.
T Consensus 18 ~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~ 88 (93)
T 3hm5_A 18 VYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp CCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3468999999987 89999999999999999999999999999 589999999999999998877663
No 50
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.15 E-value=1.4e-11 Score=91.41 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=47.8
Q ss_pred cccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcCCCCCC
Q 023677 20 ALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLHPGLKR 86 (279)
Q Consensus 20 ~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~P~l~k 86 (279)
+.+|.+++++||.+||.. |..++..+ | .+|.+||.+|++||+.||+.||.++|.+.++.
T Consensus 2 s~~p~~~~~~WT~eEd~~-----l~~~~~~~--G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKEL-----FEQGLAKF--G-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCCSSCCCCCCHHHHHH-----HHHHHHHT--C-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCCcCCCCCCHHHHHH-----HHHHHHHH--C-cCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 468899999999887764 33333332 2 39999999999999999999999999987666
No 51
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.14 E-value=3.2e-11 Score=86.07 Aligned_cols=52 Identities=12% Similarity=-0.008 Sum_probs=40.7
Q ss_pred cccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcC-CCCHHHHHHHHHHhc
Q 023677 22 GFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGL-NRTGKSCRLRWVNYL 80 (279)
Q Consensus 22 ~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~-~Rt~~QCr~RW~n~L 80 (279)
+..+.++.||.+||.. |..++.. +|..+|.+||..|+ +||++|||+||.+++
T Consensus 4 ~~p~~~~~WT~eED~~-----L~~~v~~--~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 4 GSSGFDENWGADEELL-----LIDACET--LGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCSCCCCCCHHHHHH-----HHHHHHH--TTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHH-----HHHHHHH--HCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 4567788999887774 3333333 34569999999999 999999999999975
No 52
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.09 E-value=5e-11 Score=83.28 Aligned_cols=49 Identities=16% Similarity=0.082 Sum_probs=39.0
Q ss_pred cccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcC--CCCHHHHHHHHHHhcC
Q 023677 26 ESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGL--NRTGKSCRLRWVNYLH 81 (279)
Q Consensus 26 ~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~--~Rt~~QCr~RW~n~L~ 81 (279)
++++||.+||.. |..++.. +|..+|.+||..++ +||+.||++||.++|.
T Consensus 1 kr~~WT~eEd~~-----L~~~v~~--~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKN-----LRSGVRK--YGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHH-----HHHHHHH--HCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHH-----HHHHHHH--HCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 478999877774 4444444 34459999999999 9999999999999875
No 53
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=4.7e-10 Score=80.78 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhh
Q 023677 85 KRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMR 132 (279)
Q Consensus 85 ~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr 132 (279)
..++||++|+.++++++.+||.+|..||.+||+||..+|+++|....+
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTC
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999999999999999999999999976543
No 54
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.93 E-value=1.7e-09 Score=82.75 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=52.6
Q ss_pred ccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHH----cCCCCHHHHHHHHHHhc-----CCCCCCC-CCCHHHHHHHH
Q 023677 29 RFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVV----GLNRTGKSCRLRWVNYL-----HPGLKRG-KMTPQEERLVL 98 (279)
Q Consensus 29 ~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~----~~~Rt~~QCr~RW~n~L-----~P~l~kg-~WT~eED~~Ll 98 (279)
+||.+||. +|...+..+ |..+|.+|+.. +++||+.||++||.|+| +|.++++ +..++....++
T Consensus 2 ~WT~eEd~-----~L~~gv~k~--G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~ 74 (83)
T 2ckx_A 2 PFSVAEVE-----ALVEAVEHL--GTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVL 74 (83)
T ss_dssp CCCHHHHH-----HHHHHHHHH--CSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHH
T ss_pred CCCHHHHH-----HHHHHHHHH--CCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHH
Confidence 57766555 455555544 44499999996 89999999999999988 7887776 67777778898
Q ss_pred HHHHH
Q 023677 99 ELHAK 103 (279)
Q Consensus 99 ~lv~~ 103 (279)
.++..
T Consensus 75 ~~~a~ 79 (83)
T 2ckx_A 75 AAHAY 79 (83)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88865
No 55
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.92 E-value=1.4e-09 Score=81.11 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=46.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhc----CchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 82 PGLKRGKMTPQEERLVLELHAKWG----NRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 82 P~l~kg~WT~eED~~Ll~lv~~~G----~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
.+.+.+.||.|||.+|.+++.+|+ .+|.+||.+| |||..+|++||+.|.+.
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 355678999999999999999997 6899999998 99999999999988665
No 56
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.84 E-value=2.5e-09 Score=85.21 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=62.2
Q ss_pred ccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHc----CCCCHHHHHHHHHHhc-----CCCCCCCCCCH
Q 023677 21 LGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVG----LNRTGKSCRLRWVNYL-----HPGLKRGKMTP 91 (279)
Q Consensus 21 l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~----~~Rt~~QCr~RW~n~L-----~P~l~kg~WT~ 91 (279)
.....++++||.+||.. |...+..+ |..+|.+|+..+ ++||+.||++||.|.| +|.+++|.-++
T Consensus 7 ~~~rr~r~~WT~EEd~~-----L~~gV~k~--G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P 79 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEA-----LVQAVEKL--GTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVP 79 (105)
T ss_dssp --CCCCCCSCCHHHHHH-----HHHHHHHH--CSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCC
T ss_pred ccCCCCCCCCCHHHHHH-----HHHHHHHh--CCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCC
Confidence 45678899999877764 44444443 444999999965 8999999999999999 79999999888
Q ss_pred HHHHH-HHHHHHHhcC
Q 023677 92 QEERL-VLELHAKWGN 106 (279)
Q Consensus 92 eED~~-Ll~lv~~~G~ 106 (279)
+|-.. +++|+..+|+
T Consensus 80 ~~~l~rv~~~~~~~~~ 95 (105)
T 2aje_A 80 QELLNRVLNAHGYWTQ 95 (105)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 88766 8888887764
No 57
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.31 E-value=4.6e-10 Score=86.71 Aligned_cols=55 Identities=11% Similarity=-0.041 Sum_probs=44.9
Q ss_pred ccccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcC
Q 023677 19 SALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLH 81 (279)
Q Consensus 19 ~~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~ 81 (279)
..+++.+.++.||.+||.. |++++..+ +.+|..||..|+|||+.||+.||.++|.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~----l~~~~~~~----G~~W~~IA~~l~gRt~~q~k~r~~~~lr 62 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGT----AKKGLLEH----GRNWSAIARMVGSKTVSQCKNFYFNYKK 62 (89)
Confidence 4578999999999999985 33333332 3379999999999999999999999886
No 58
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.75 E-value=2.6e-09 Score=79.80 Aligned_cols=56 Identities=9% Similarity=-0.011 Sum_probs=42.3
Q ss_pred ccccccccccccCcccchHHHHHHHHHhhhhcC-CcCHHHHHHHcCCCCHHHHHHHHHHhcC
Q 023677 21 LGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSN-SFNYMKYFVVGLNRTGKSCRLRWVNYLH 81 (279)
Q Consensus 21 l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g-~~~W~~IA~~~~~Rt~~QCr~RW~n~L~ 81 (279)
..+.+.++.||.+||. +|..++..++.+ ..+|.+||.+|||||.+||+.||.+.+.
T Consensus 12 ~~~~~~~~~WT~eEd~-----~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 12 ERARSAEEPWTQNQQK-----LLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp CTTTCSSCCCCHHHHH-----HHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred cccccCCCCCCHHHHH-----HHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 4466788889877666 444444443322 3689999999999999999999998765
No 59
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.69 E-value=1.2e-08 Score=90.86 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=45.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 86 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
.++||+||+.++++++.+||++|..||+.|++||.+|||++|+...|+
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999988776
No 60
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.67 E-value=9.4e-09 Score=77.81 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=38.7
Q ss_pred cccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHh
Q 023677 22 GFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNY 79 (279)
Q Consensus 22 ~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~ 79 (279)
.....++.||.+||.. |..++.. +| .+|.+||.+|++||+.||+.||.++
T Consensus 13 ~~~~~~~~WT~eEd~~-----Ll~~v~~--~G-~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLL-----LLEALEM--YK-DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHH-----HHHHHHH--SS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHH-----HHHHHHH--hC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4456688999877764 3333333 33 6999999999999999999999997
No 61
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.57 E-value=5.6e-08 Score=72.61 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcC----chhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 86 RGKMTPQEERLVLELHAKWGN----RWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~----~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
...||.+|+.+|.++...|+. +|.+||..++|||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 458999999999999999984 799999999999999999999988664
No 62
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.46 E-value=7.3e-08 Score=75.14 Aligned_cols=49 Identities=8% Similarity=0.048 Sum_probs=37.1
Q ss_pred ccccccCcccchHHHHHHHHHhhhhcC-CcCHHHHHHHcCCCCHHHHHHHHHHhc
Q 023677 27 SFRFEGGGRQYNRGRLFRRYTNFRRSN-SFNYMKYFVVGLNRTGKSCRLRWVNYL 80 (279)
Q Consensus 27 k~~wt~~ed~~~~~~llr~l~~~~~~g-~~~W~~IA~~~~~Rt~~QCr~RW~n~L 80 (279)
++.||.+||. +|..++..+..+ ...|.+||..|||||.+||+.||.+.+
T Consensus 8 ~~~WT~eEd~-----~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 8 GRPWSAKENK-----AFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV 57 (93)
T ss_dssp CCSCCHHHHH-----HHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHH-----HHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 5678866665 454444444433 478999999999999999999999875
No 63
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.43 E-value=2.8e-07 Score=65.99 Aligned_cols=47 Identities=21% Similarity=0.420 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------cCc-hhHHhh-hCCCCCHHHHHHHHHHHhh
Q 023677 86 RGKMTPQEERLVLELHAKW--------GNR-WSRIAR-KLPGRTDNEIKNYWRTHMR 132 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~--------G~~-W~~Ia~-~lpgRT~~q~knRw~~llr 132 (279)
|.+||+|||..|++.|.++ |++ |..+++ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 544 999999 8999999999999998775
No 64
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.33 E-value=5.7e-07 Score=69.47 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=44.8
Q ss_pred CCCHHHHHHHHHHHHHhcC---chhHHhhhCCCCCHHHHHHHHHHHhhHHH
Q 023677 88 KMTPQEERLVLELHAKWGN---RWSRIARKLPGRTDNEIKNYWRTHMRKKA 135 (279)
Q Consensus 88 ~WT~eED~~Ll~lv~~~G~---~W~~Ia~~lpgRT~~q~knRw~~llr~~~ 135 (279)
-||.|||+.||..+++-|. .|..||+.|.+|+.+||++||+.|++--.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~ 85 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFH 85 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 5999999999999999997 79999999999999999999999998643
No 65
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.60 E-value=1e-07 Score=69.95 Aligned_cols=45 Identities=22% Similarity=0.382 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHhcC---chhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 88 KMTPQEERLVLELHAKWGN---RWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 88 ~WT~eED~~Ll~lv~~~G~---~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
-||.|||..||..+++-|. .|..||..| +||.+||++||+.|++-
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 5999999999999999997 799999999 99999999999998874
No 66
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.15 E-value=7e-06 Score=63.81 Aligned_cols=62 Identities=21% Similarity=0.306 Sum_probs=54.2
Q ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCC-----CCCHHHHHHHHHHHhhHHHHhhh
Q 023677 74 LRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLP-----GRTDNEIKNYWRTHMRKKAQERK 139 (279)
Q Consensus 74 ~RW~n~L~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lp-----gRT~~q~knRw~~llr~~~~~~~ 139 (279)
+.|..+|. ...||.||-..|++|+++|+-+|..|+.++. .||-.++|+||..+.++..+.+.
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 45777775 3689999999999999999999999999874 79999999999999999877664
No 67
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=6.9e-06 Score=59.27 Aligned_cols=49 Identities=16% Similarity=0.259 Sum_probs=45.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhh-hCCCCCHHHHHHHHHH
Q 023677 81 HPGLKRGKMTPQEERLVLELHAKWGNRWSRIAR-KLPGRTDNEIKNYWRT 129 (279)
Q Consensus 81 ~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~-~lpgRT~~q~knRw~~ 129 (279)
-|.+....||+||-.+..+.+.+||..|..|++ .|++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 377888999999999999999999999999999 5999999999998863
No 68
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.93 E-value=1.8e-06 Score=64.30 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcC----chhHHhhhCCCCCHHHHHHHHH
Q 023677 86 RGKMTPQEERLVLELHAKWGN----RWSRIARKLPGRTDNEIKNYWR 128 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~----~W~~Ia~~lpgRT~~q~knRw~ 128 (279)
...||.+|+.+|.++...|+. +|.+||..|||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 458999999999999999995 7999999999999999999985
No 69
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=3.5e-05 Score=55.05 Aligned_cols=47 Identities=9% Similarity=-0.057 Sum_probs=34.5
Q ss_pred ccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHh
Q 023677 25 CESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNY 79 (279)
Q Consensus 25 l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~ 79 (279)
-..+.|+.+|+.. +......+ +.+|.+||..+++||..||+++|...
T Consensus 10 ~~~~~WT~eE~~~-----F~~~~~~~---gk~w~~Ia~~l~~rt~~~~v~~Yy~~ 56 (61)
T 2eqr_A 10 QFMNVWTDHEKEI-----FKDKFIQH---PKNFGLIASYLERKSVPDCVLYYYLT 56 (61)
T ss_dssp SCCCSCCHHHHHH-----HHHHHHHS---TTCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHH-----HHHHHHHh---CCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 4457788766664 33333332 36999999999999999999999764
No 70
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.57 E-value=0.00011 Score=57.10 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=41.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHH
Q 023677 86 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRT 129 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~ 129 (279)
...||++|-.+..+...+||.+|.+|+..||+||..+|-..|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhc
Confidence 35799999999999999999999999999999999999999864
No 71
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.53 E-value=3.3e-05 Score=55.08 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=38.4
Q ss_pred ccccccCcccchHHHHHHHHHhhhhc-----CCcCHHHHHH-HcCCCCHHHHHHHHHHhcC
Q 023677 27 SFRFEGGGRQYNRGRLFRRYTNFRRS-----NSFNYMKYFV-VGLNRTGKSCRLRWVNYLH 81 (279)
Q Consensus 27 k~~wt~~ed~~~~~~llr~l~~~~~~-----g~~~W~~IA~-~~~~Rt~~QCr~RW~n~L~ 81 (279)
+..||.+||.. |+.-+...... |...|.++|+ .+++||-.+||+||.++|.
T Consensus 2 R~~FT~edD~~----L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVA----ILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHH----HHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHH----HHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 45677777764 33344444322 6688999999 8999999999999999985
No 72
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.52 E-value=7.3e-05 Score=73.31 Aligned_cols=48 Identities=19% Similarity=0.396 Sum_probs=43.8
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 86 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
..+||.+|-.++++++.+||..|..||..+..||..|||++|...-++
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999754443
No 73
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.46 E-value=6.9e-05 Score=55.81 Aligned_cols=49 Identities=6% Similarity=0.123 Sum_probs=34.4
Q ss_pred cccccCcccchHHHHHHH-HHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcC
Q 023677 28 FRFEGGGRQYNRGRLFRR-YTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLH 81 (279)
Q Consensus 28 ~~wt~~ed~~~~~~llr~-l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~ 81 (279)
..|+.+|+. +|+. |..+-....-.|.+||..|++||..+|+.||...+.
T Consensus 9 ~~WT~eE~k-----~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~ 58 (73)
T 1wgx_A 9 KEWNEKELQ-----KLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR 58 (73)
T ss_dssp SCCCHHHHH-----HHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred CCCCHHHHH-----HHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 356654444 4444 443322334679999999999999999999998755
No 74
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.45 E-value=0.00027 Score=51.93 Aligned_cols=43 Identities=23% Similarity=0.346 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchhHHhh-hCCCCCHHHHHHHHH
Q 023677 86 RGKMTPQEERLVLELHAKWGNRWSRIAR-KLPGRTDNEIKNYWR 128 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~~W~~Ia~-~lpgRT~~q~knRw~ 128 (279)
...||++|-.+..+.+.+||..|..|++ .|++||..+|...|.
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHH
Confidence 4589999999999999999999999999 599999999999987
No 75
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.44 E-value=6.1e-05 Score=55.84 Aligned_cols=51 Identities=6% Similarity=-0.128 Sum_probs=37.8
Q ss_pred ccccccccCcccchHHHHHHHHHhhhhcCC-cCHHHHHHHcCCCCHHHHHHHHHHhcC
Q 023677 25 CESFRFEGGGRQYNRGRLFRRYTNFRRSNS-FNYMKYFVVGLNRTGKSCRLRWVNYLH 81 (279)
Q Consensus 25 l~k~~wt~~ed~~~~~~llr~l~~~~~~g~-~~W~~IA~~~~~Rt~~QCr~RW~n~L~ 81 (279)
...+.||.+|+. +|..++.....+. ..|.+||..+ |||.+||+.||...++
T Consensus 6 ~~~~~WT~eE~k-----~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~ 57 (72)
T 2cqq_A 6 SGAPEWTEEDLS-----QLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD 57 (72)
T ss_dssp CCCCCCCHHHHH-----HHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHH-----HHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 446678765555 5666666655553 6799999998 9999999999987544
No 76
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.22 E-value=0.00044 Score=52.18 Aligned_cols=51 Identities=16% Similarity=0.362 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcC----------chhHHhhhC----CCCCHHHHHHHHHHHhhHHHH
Q 023677 86 RGKMTPQEERLVLELHAKWGN----------RWSRIARKL----PGRTDNEIKNYWRTHMRKKAQ 136 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~----------~W~~Ia~~l----pgRT~~q~knRw~~llr~~~~ 136 (279)
...||.+|-.+||+++..+.. .|..||..| -.||+.||+++|.+|.+.-.+
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~ 68 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKK 68 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 467999999999999976432 599999987 369999999999999887433
No 77
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.08 E-value=0.00029 Score=50.80 Aligned_cols=48 Identities=10% Similarity=0.156 Sum_probs=35.5
Q ss_pred cccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHH---HcCCCCHHHHHHHHHHhcC
Q 023677 26 ESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFV---VGLNRTGKSCRLRWVNYLH 81 (279)
Q Consensus 26 ~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~---~~~~Rt~~QCr~RW~n~L~ 81 (279)
.+..|+.+|+.. |+..+. .+|. +|.+|+. ++++||.....+||.+...
T Consensus 7 ~r~~WT~EE~~~----L~~gV~---k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 7 GRKDFTKEEVNY----LFHGVK---TMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CSSSCCHHHHHH----HHHHHH---HHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHH----HHHHHH---HHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence 677888777764 333333 3454 9999994 7789999999999998543
No 78
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.07 E-value=0.0004 Score=61.94 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=35.3
Q ss_pred ccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhcC
Q 023677 25 CESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYLH 81 (279)
Q Consensus 25 l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L~ 81 (279)
-...+||.+|+.. ++..+.. + +.+|.+||..|++||..||+..|.++..
T Consensus 131 k~s~~WTeEE~~l----FleAl~k---Y-GKDW~~IAk~VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLL----AVQAIRK---Y-GRDFQAISDVIGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHH----HHHHHHH---H-SSCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHH----HHHHHHH---H-CcCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3456777665543 2222222 2 4689999999999999999999998764
No 79
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.42 E-value=0.016 Score=53.72 Aligned_cols=87 Identities=15% Similarity=0.064 Sum_probs=64.8
Q ss_pred hhhhcCCcCHHHHHHHcCCCCHHHHHH-------HH-----------------------HHh------------------
Q 023677 48 NFRRSNSFNYMKYFVVGLNRTGKSCRL-------RW-----------------------VNY------------------ 79 (279)
Q Consensus 48 ~~~~~g~~~W~~IA~~~~~Rt~~QCr~-------RW-----------------------~n~------------------ 79 (279)
....+|.-+|..||..|++.|....+. || ...
T Consensus 124 a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~~Ki~~~~~P~~~L 203 (304)
T 1ofc_X 124 ANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQKMSRYRAPFHQL 203 (304)
T ss_dssp HHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHC
T ss_pred HHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHh
Confidence 344556779999999999998876421 11 100
Q ss_pred -c-CCCCCCCCCCHHHHHHHHHHHHHhcC----chhHHhh------------hCCCCCHHHHHHHHHHHhhHH
Q 023677 80 -L-HPGLKRGKMTPQEERLVLELHAKWGN----RWSRIAR------------KLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 80 -L-~P~l~kg~WT~eED~~Ll~lv~~~G~----~W~~Ia~------------~lpgRT~~q~knRw~~llr~~ 134 (279)
+ .+..+...||.+||..||-.+.+||- .|..|.. ++..||..+|..|.++|++--
T Consensus 204 ~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 204 RLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 0 13334568999999999999999994 6999962 346799999999999999864
No 80
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=95.84 E-value=0.0022 Score=47.64 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=32.9
Q ss_pred cccccCcccchHHHHHHHHHhhhhcC-CcCHHHHHHHcCCCCHHHHHHHHH
Q 023677 28 FRFEGGGRQYNRGRLFRRYTNFRRSN-SFNYMKYFVVGLNRTGKSCRLRWV 77 (279)
Q Consensus 28 ~~wt~~ed~~~~~~llr~l~~~~~~g-~~~W~~IA~~~~~Rt~~QCr~RW~ 77 (279)
..|+.+| +++|+........+ .-.|.+||..|||||..+|+.+|.
T Consensus 21 ~~WT~eE-----~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSE-----NIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTH-----HHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCHHH-----HHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566554 44565555555554 467999999999999999999884
No 81
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=94.58 E-value=0.018 Score=43.09 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=22.1
Q ss_pred CcCHHHHHHHc----CCCCHHHHHHHHHHhc
Q 023677 54 SFNYMKYFVVG----LNRTGKSCRLRWVNYL 80 (279)
Q Consensus 54 ~~~W~~IA~~~----~~Rt~~QCr~RW~n~L 80 (279)
...|..||..| -.||+.||+.+|.|..
T Consensus 33 ~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 33 KHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35799999754 4899999999998854
No 82
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=93.99 E-value=0.039 Score=54.13 Aligned_cols=45 Identities=16% Similarity=0.119 Sum_probs=31.8
Q ss_pred ccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHh
Q 023677 27 SFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNY 79 (279)
Q Consensus 27 k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~ 79 (279)
..+||.+|.. ..+..+..+ +.+|..||.+|++||..||+..|.++
T Consensus 380 ~~~WT~eE~~-------~f~~al~~y-Gkdw~~IA~~VgTKT~~Qvk~fy~~~ 424 (482)
T 2xag_B 380 NARWTTEEQL-------LAVQAIRKY-GRDFQAISDVIGNKSVVQVKNFFVNY 424 (482)
T ss_dssp CSCCCHHHHH-------HHHHHHHHH-TTCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred CCCCCHHHHH-------HHHHHHHHH-CcCHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566654443 222233333 46999999999999999999998764
No 83
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.73 E-value=0.051 Score=38.68 Aligned_cols=48 Identities=10% Similarity=-0.040 Sum_probs=32.5
Q ss_pred cccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHH-HcCCCCHHHHHHHHH
Q 023677 22 GFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFV-VGLNRTGKSCRLRWV 77 (279)
Q Consensus 22 ~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~-~~~~Rt~~QCr~RW~ 77 (279)
.|.+....|+.+|-. ++.. .....+.+|.+||. .+++|+..||.+-|-
T Consensus 4 ~p~~~~~~WT~eE~~-----~Fe~---~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVK-----RFVK---GLRQYGKNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCCCCSCCHHHHH-----HHHH---HHHHTCSCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHH-----HHHH---HHHHhCccHHHHHHHHcCCCcHHHHHHHHh
Confidence 356677788765544 2222 22223568999999 599999999977653
No 84
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=93.09 E-value=0.065 Score=41.43 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=41.8
Q ss_pred ccccccccccccccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHc-----CCCCHHHHHHHHHHhc
Q 023677 13 CAAVWRSALGFYCESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVG-----LNRTGKSCRLRWVNYL 80 (279)
Q Consensus 13 C~~rW~~~l~~~l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~-----~~Rt~~QCr~RW~n~L 80 (279)
|..+|.+.|.+ ..|+.+|+.. |+.++..+ +..|..|+... ++||..+.++||-.+.
T Consensus 20 t~eeY~~~L~~----~~WTkEETd~----Lf~L~~~f----dlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~ 80 (93)
T 3hm5_A 20 SEQEYQLYLHD----DAWTKAETDH----LFDLSRRF----DLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp CHHHHHHHTCB----TTBCHHHHHH----HHHHHHHT----TTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHcCC----CCCCHHHHHH----HHHHHHHh----CCCeeeehhhhccCCCCCCCHHHHHHHHHHHH
Confidence 45566666654 7888776664 55555555 77999999988 5899999999997754
No 85
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.86 E-value=0.33 Score=34.91 Aligned_cols=47 Identities=13% Similarity=0.024 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCc---hhHHhhhC--CCCCHHHHHHHHHHH
Q 023677 84 LKRGKMTPQEERLVLELHAKWGNR---WSRIARKL--PGRTDNEIKNYWRTH 130 (279)
Q Consensus 84 l~kg~WT~eED~~Ll~lv~~~G~~---W~~Ia~~l--pgRT~~q~knRw~~l 130 (279)
-.+-.||+|.-...+++|.++|.. +..|.+.| +|.|-.+|+.|.+..
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 346689999999999999999954 67888875 799999999986543
No 86
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=91.91 E-value=0.11 Score=39.93 Aligned_cols=25 Identities=16% Similarity=0.098 Sum_probs=21.9
Q ss_pred CCcCHHHHHHHcCCCCHHHHHHHHH
Q 023677 53 NSFNYMKYFVVGLNRTGKSCRLRWV 77 (279)
Q Consensus 53 g~~~W~~IA~~~~~Rt~~QCr~RW~ 77 (279)
.+++|.+||..+++||..||.+-|-
T Consensus 61 ~gK~F~~Ia~~l~~Kt~~~cV~~YY 85 (94)
T 4a69_C 61 HPKNFGLIASFLERKTVAECVLYYY 85 (94)
T ss_dssp STTCHHHHHHTCTTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCCHHHHHHHHh
Confidence 3679999999999999999987663
No 87
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.84 E-value=0.28 Score=45.36 Aligned_cols=48 Identities=19% Similarity=0.322 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcC-chhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 86 RGKMTPQEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
.+.||..+....+.++.+||. .|..||..|+|.|..+|+.++.....+
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r 158 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER 158 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 457999999999999999995 799999999999999998877655543
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=91.46 E-value=0.44 Score=40.78 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHHhc-CchhHHhh--hC------------CCCCHHHHHHHHHHHhhH
Q 023677 87 GKMTPQEERLVLELHAKWG-NRWSRIAR--KL------------PGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 87 g~WT~eED~~Ll~lv~~~G-~~W~~Ia~--~l------------pgRT~~q~knRw~~llr~ 133 (279)
..||.+||..||..+.+|| ++|..|.. .| ..++...+..|-..||+-
T Consensus 135 ~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 135 IDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 3699999999999999999 89999965 22 125677899998777764
No 89
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=90.88 E-value=0.39 Score=41.10 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhc---CchhHHhh--hCCCCCHHHHHHHHHHHhhHH
Q 023677 85 KRGKMTPQEERLVLELHAKWG---NRWSRIAR--KLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 85 ~kg~WT~eED~~Ll~lv~~~G---~~W~~Ia~--~lpgRT~~q~knRw~~llr~~ 134 (279)
....||..|-..|++++.+|| .+|..|+. .|.++|...|+..+..++..-
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c 60 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGC 60 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 456899999999999999999 57999986 488999999999887777654
No 90
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=89.75 E-value=0.38 Score=45.74 Aligned_cols=53 Identities=19% Similarity=0.330 Sum_probs=43.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CchhHHhhh------------CCCCCHHHHHHHHHHHhhHHHHh
Q 023677 85 KRGKMTPQEERLVLELHAKWG----NRWSRIARK------------LPGRTDNEIKNYWRTHMRKKAQE 137 (279)
Q Consensus 85 ~kg~WT~eED~~Ll~lv~~~G----~~W~~Ia~~------------lpgRT~~q~knRw~~llr~~~~~ 137 (279)
+...||.+||..||-.+.+|| +.|.+|-.. |..||..+|..|.++|++-..+.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE 295 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKE 295 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 355799999999999999999 469998433 35699999999999999875444
No 91
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=86.05 E-value=0.57 Score=33.89 Aligned_cols=24 Identities=4% Similarity=-0.218 Sum_probs=20.6
Q ss_pred CcCHHHHHH-HcCCCCHHHHHHHHH
Q 023677 54 SFNYMKYFV-VGLNRTGKSCRLRWV 77 (279)
Q Consensus 54 ~~~W~~IA~-~~~~Rt~~QCr~RW~ 77 (279)
+.+|..|+. .+++|+..||.+-|-
T Consensus 27 GKdf~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 27 GKDFNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp CSCHHHHHHTTCSSSCHHHHHHHHH
T ss_pred CccHHHHHHHHcCCCCHHHHHHHHH
Confidence 558999999 699999999977664
No 92
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=84.70 E-value=1.9 Score=33.11 Aligned_cols=26 Identities=12% Similarity=-0.008 Sum_probs=23.6
Q ss_pred CCcCHHHHHHHcCCCCHHHHHHHHHH
Q 023677 53 NSFNYMKYFVVGLNRTGKSCRLRWVN 78 (279)
Q Consensus 53 g~~~W~~IA~~~~~Rt~~QCr~RW~n 78 (279)
....|..||+.+.+|++.|..+|++.
T Consensus 54 s~~tFa~iA~~L~Nks~nqV~~RFq~ 79 (95)
T 1ug2_A 54 QPHTFSVISQQLGNKTPVEVSHRFRE 79 (95)
T ss_dssp CTTTHHHHHHHHSSCCHHHHHHHHHH
T ss_pred ChhHHHHHHHHHccCCHHHHHHHHHH
Confidence 35789999999999999999999975
No 93
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=82.67 E-value=0.83 Score=41.51 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHhc-CchhHHhh
Q 023677 87 GKMTPQEERLVLELHAKWG-NRWSRIAR 113 (279)
Q Consensus 87 g~WT~eED~~Ll~lv~~~G-~~W~~Ia~ 113 (279)
..|+.+||..||..|.+|| +.|..|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999 78999975
No 94
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=81.13 E-value=0.35 Score=35.29 Aligned_cols=47 Identities=4% Similarity=0.058 Sum_probs=32.5
Q ss_pred cccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcCCCCHHHHHHHHHHhc
Q 023677 28 FRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGLNRTGKSCRLRWVNYL 80 (279)
Q Consensus 28 ~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~~Rt~~QCr~RW~n~L 80 (279)
.-|+.++|.. +|..+... +....-|..||..+ +|++.|..+|++.-+
T Consensus 15 vlWTReeDR~----IL~~cq~~-G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm 61 (70)
T 2lr8_A 15 ILWTRNDDRV----ILLECQKR-GPSSKTFAYLAAKL-DKNPNQVSERFQQLM 61 (70)
Confidence 4578777764 33333222 22247899999988 999999999998644
No 95
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=77.11 E-value=6 Score=35.80 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHHhc---CchhHHhh--hCCCCCHHHHHHHHHHHhhH
Q 023677 86 RGKMTPQEERLVLELHAKWG---NRWSRIAR--KLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G---~~W~~Ia~--~lpgRT~~q~knRw~~llr~ 133 (279)
+++||..|=..|++.+.+|| .+|..|+. .|+.++...++.-++.++..
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~ 55 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEA 55 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 57899999999999999999 58999976 58999999999988877765
No 96
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=63.81 E-value=8.2 Score=26.01 Aligned_cols=44 Identities=18% Similarity=0.144 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 89 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 89 WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
.+ +.+..++.++-..|-.+.+||..| |-+...|+++....+++-
T Consensus 16 L~-~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 16 LT-TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDAL 59 (70)
T ss_dssp SC-HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44 455666667667889999999999 889999999877665553
No 97
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=62.74 E-value=23 Score=27.92 Aligned_cols=43 Identities=14% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHHHHhc--------CchhHHhhhCCCCC----HHHHHHHHHHHhhHHHHh
Q 023677 95 RLVLELHAKWG--------NRWSRIARKLPGRT----DNEIKNYWRTHMRKKAQE 137 (279)
Q Consensus 95 ~~Ll~lv~~~G--------~~W~~Ia~~lpgRT----~~q~knRw~~llr~~~~~ 137 (279)
-.|..+|.++| +.|.+|+..|.--+ ...+|+.|..+|..--..
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~~ 108 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFECK 108 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45777788888 47999999883222 568999999999886554
No 98
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=61.41 E-value=6.5 Score=30.76 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=31.1
Q ss_pred HHHHHHHHhc--------CchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 96 LVLELHAKWG--------NRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 96 ~Ll~lv~~~G--------~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
.|..+|.+.| +.|..|+..|.--.+..+|..|..+|-.-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 5778888888 37999999874334889999999888764
No 99
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=59.79 E-value=11 Score=26.21 Aligned_cols=43 Identities=19% Similarity=0.297 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHH----hcCchhHHhhhCCCCCHHHHHHHHHHHhhHHH
Q 023677 92 QEERLVLELHAK----WGNRWSRIARKLPGRTDNEIKNYWRTHMRKKA 135 (279)
Q Consensus 92 eED~~Ll~lv~~----~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~~ 135 (279)
+.+..++.+.-- .|-.+.+||..| |-|...|+++....+++-.
T Consensus 13 ~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 13 EREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 344555555554 578899999999 9999999998777766544
No 100
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=59.39 E-value=14 Score=28.14 Aligned_cols=40 Identities=10% Similarity=0.292 Sum_probs=29.9
Q ss_pred HHHHHHHHHhc--------CchhHHhhhCCCCC----HHHHHHHHHHHhhHH
Q 023677 95 RLVLELHAKWG--------NRWSRIARKLPGRT----DNEIKNYWRTHMRKK 134 (279)
Q Consensus 95 ~~Ll~lv~~~G--------~~W~~Ia~~lpgRT----~~q~knRw~~llr~~ 134 (279)
-.|..+|.+.| +.|..|+..|.--. ..++|..|...|-.-
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 35677777777 47999999983322 578999999888764
No 101
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=58.21 E-value=11 Score=30.74 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=27.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 023677 58 MKYFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLE 99 (279)
Q Consensus 58 ~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~ 99 (279)
..||..+.|+|+.+||+.+ +| ...+|+||++.|.+
T Consensus 119 ~~vA~~ikgkt~eeir~~f------~I-~nd~t~eEe~~ir~ 153 (160)
T 2p1m_A 119 QTVADMIKGKTPEEIRTTF------NI-KNDFTPEEEEEVRR 153 (160)
T ss_dssp HHHHHTTTTCCHHHHHHHT------TC-CCCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHc------CC-CCCCCHHHHHHHHH
Confidence 3588899999999999977 34 34699999988754
No 102
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=56.91 E-value=13 Score=29.04 Aligned_cols=43 Identities=14% Similarity=0.252 Sum_probs=31.9
Q ss_pred HHHHHHHHHhc--------CchhHHhhhCCCC--C--HHHHHHHHHHHhhHHHHh
Q 023677 95 RLVLELHAKWG--------NRWSRIARKLPGR--T--DNEIKNYWRTHMRKKAQE 137 (279)
Q Consensus 95 ~~Ll~lv~~~G--------~~W~~Ia~~lpgR--T--~~q~knRw~~llr~~~~~ 137 (279)
-.|..+|.+.| +.|.+|+..|.-- + ...+|..|..+|-.--..
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~ 97 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMY 97 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 45778888888 4799999988222 2 568999999988874433
No 103
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=56.50 E-value=15 Score=26.58 Aligned_cols=42 Identities=24% Similarity=0.269 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 92 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 92 eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
+.+..++.++-..|-.-.+||..| |-+...|+++....+++-
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 455666777777788899999999 999999999987766654
No 104
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=56.23 E-value=9.9 Score=25.98 Aligned_cols=42 Identities=17% Similarity=0.215 Sum_probs=31.2
Q ss_pred HHHHHHHHHHH----HhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 92 QEERLVLELHA----KWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 92 eED~~Ll~lv~----~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
+.+..++.+.- ..|-.+.+||..| |-|...|+++....+++-
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34445555544 3578899999999 999999999887776654
No 105
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.23 E-value=69 Score=25.01 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=32.2
Q ss_pred HHHHHHHHHhc--------CchhHHhhhCCCC--C--HHHHHHHHHHHhhHHHHhh
Q 023677 95 RLVLELHAKWG--------NRWSRIARKLPGR--T--DNEIKNYWRTHMRKKAQER 138 (279)
Q Consensus 95 ~~Ll~lv~~~G--------~~W~~Ia~~lpgR--T--~~q~knRw~~llr~~~~~~ 138 (279)
-.|..+|.+.| +.|.+|+..|.-- + ...+|+.|..+|-.--...
T Consensus 45 y~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~~~ 100 (122)
T 2eqy_A 45 FQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNLFL 100 (122)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHHHH
Confidence 45777888888 3799999988221 2 4689999999888754443
No 106
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=52.06 E-value=8.7 Score=30.55 Aligned_cols=41 Identities=17% Similarity=0.346 Sum_probs=31.9
Q ss_pred HHHHHHHHhc--------CchhHHhhhCCCCCHHHHHHHHHHHhhHHHH
Q 023677 96 LVLELHAKWG--------NRWSRIARKLPGRTDNEIKNYWRTHMRKKAQ 136 (279)
Q Consensus 96 ~Ll~lv~~~G--------~~W~~Ia~~lpgRT~~q~knRw~~llr~~~~ 136 (279)
.|..+|.+.| +.|.+|+..|.--.+..+|+.|...|-.--.
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 5677777777 3699999987333399999999999987544
No 107
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=51.75 E-value=18 Score=27.68 Aligned_cols=48 Identities=10% Similarity=0.113 Sum_probs=33.4
Q ss_pred ccccccccCcccchHHHHHHHHHhhhhcCCcCHHHHHHHcC-----CCCHHHHHHHHHHhc
Q 023677 25 CESFRFEGGGRQYNRGRLFRRYTNFRRSNSFNYMKYFVVGL-----NRTGKSCRLRWVNYL 80 (279)
Q Consensus 25 l~k~~wt~~ed~~~~~~llr~l~~~~~~g~~~W~~IA~~~~-----~Rt~~QCr~RW~n~L 80 (279)
|+...|+.+|.. -|+.++..+ ...|..|+.... .||-.+..+||-.+.
T Consensus 28 L~~~~WT~eETd----~LfdLc~~f----dlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~ 80 (93)
T 4iej_A 28 LHDDAWTKAETD----HLFDLSRRF----DLRFVVIHDRYDHQQFKKRSVEDLKERYYHIC 80 (93)
T ss_dssp TCBTTBCHHHHH----HHHHHHHHT----TTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHH----HHHHHHHHc----CCCeEEEeeccccCCCCCCCHHHHHHHHHHHH
Confidence 344567765443 245555544 678999998654 799999999997753
No 108
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=51.74 E-value=24 Score=33.32 Aligned_cols=45 Identities=27% Similarity=0.406 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHhcC-chhHHhhhCC-CCCHHHHHHHHHHH
Q 023677 86 RGKMTPQEERLVLELHAKWGN-RWSRIARKLP-GRTDNEIKNYWRTH 130 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~-~W~~Ia~~lp-gRT~~q~knRw~~l 130 (279)
.+.||..+=..++.++.+||. .-..||..|. |.|..+|+......
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vF 169 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAF 169 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 457999999999999999995 4899999997 99999999654433
No 109
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=49.39 E-value=20 Score=29.70 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=27.9
Q ss_pred HHHHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHH
Q 023677 58 MKYFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVL 98 (279)
Q Consensus 58 ~~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll 98 (279)
..||..+.|+|+.+.|+.+ +|. ..||+||++.|.
T Consensus 127 ~~vA~~ikgktpeeiR~~f------~I~-nd~t~eEe~~ir 160 (169)
T 3v7d_A 127 KVVAEMIRGRSPEEIRRTF------NIV-NDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHTTCCHHHHHHHH------TCC-CCCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHc------CCC-CCCCHHHHHHHH
Confidence 5688999999999999977 333 359999999875
No 110
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=48.20 E-value=11 Score=28.29 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=28.4
Q ss_pred HHHHHHHHHhc--------CchhHHhhhC--CC--CCHHHHHHHHHHHhhH
Q 023677 95 RLVLELHAKWG--------NRWSRIARKL--PG--RTDNEIKNYWRTHMRK 133 (279)
Q Consensus 95 ~~Ll~lv~~~G--------~~W~~Ia~~l--pg--RT~~q~knRw~~llr~ 133 (279)
-.|..+|.+.| +.|.+|+..| +. -...++|+.|...|-.
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 35777788887 4799999987 22 1256899999877765
No 111
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=47.15 E-value=21 Score=28.22 Aligned_cols=44 Identities=16% Similarity=0.288 Sum_probs=32.6
Q ss_pred HHHHHHHHHhc--------CchhHHhhhC--CCC---CHHHHHHHHHHHhhHHHHhh
Q 023677 95 RLVLELHAKWG--------NRWSRIARKL--PGR---TDNEIKNYWRTHMRKKAQER 138 (279)
Q Consensus 95 ~~Ll~lv~~~G--------~~W~~Ia~~l--pgR---T~~q~knRw~~llr~~~~~~ 138 (279)
-.|..+|.+.| +.|.+|+..| +.. ....+|..|...|-.--...
T Consensus 55 ~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~~~ 111 (128)
T 1c20_A 55 YELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEK 111 (128)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888 4799999987 322 25799999999888754433
No 112
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=46.89 E-value=37 Score=23.25 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 89 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 89 WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
.|+.| ..++.++ ..|-.-.+||..| |-+...|+++....+++
T Consensus 17 L~~~e-~~vl~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERE-RQVLSAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHH-HHHHHHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHH-HHHHHHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 44544 4445555 6788899999999 88999999988776665
No 113
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=45.98 E-value=21 Score=28.25 Aligned_cols=39 Identities=15% Similarity=0.376 Sum_probs=29.6
Q ss_pred HHHHHHHHHhc--------CchhHHhhhC--CCC---CHHHHHHHHHHHhhH
Q 023677 95 RLVLELHAKWG--------NRWSRIARKL--PGR---TDNEIKNYWRTHMRK 133 (279)
Q Consensus 95 ~~Ll~lv~~~G--------~~W~~Ia~~l--pgR---T~~q~knRw~~llr~ 133 (279)
-.|..+|.+.| +.|..|+..| |.- ....+|++|..+|-.
T Consensus 45 ~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~ 96 (121)
T 2rq5_A 45 ACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLS 96 (121)
T ss_dssp HHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHH
Confidence 46778888888 4799999988 332 256899999887765
No 114
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=45.19 E-value=33 Score=25.15 Aligned_cols=44 Identities=27% Similarity=0.268 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 88 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 88 ~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+++....+++-
T Consensus 27 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~kL 70 (95)
T 3c57_A 27 GLTDQERTLLG-LL-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAKL 70 (95)
T ss_dssp CCCHHHHHHHH-HH-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 46666655554 45 7788899999999 889999999877666654
No 115
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=44.01 E-value=43 Score=24.51 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=36.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 85 KRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 85 ~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
.....|+.|-+.|.-++ .|..-.+||..| |-+...|+++...++++-
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 34468888777665544 788899999999 899999999988887763
No 116
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=43.93 E-value=16 Score=28.56 Aligned_cols=41 Identities=10% Similarity=0.032 Sum_probs=27.6
Q ss_pred HHHHHHhhhhcCC-------cCHHHHHHHcCCCC----HHHHHHHHHHhcCC
Q 023677 42 LFRRYTNFRRSNS-------FNYMKYFVVGLNRT----GKSCRLRWVNYLHP 82 (279)
Q Consensus 42 llr~l~~~~~~g~-------~~W~~IA~~~~~Rt----~~QCr~RW~n~L~P 82 (279)
|++++..+...|+ ..|.+||..+.--. +.+.+..|.++|.|
T Consensus 42 L~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 42 LYSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 5556655555543 57999999775432 45668888888865
No 117
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=43.36 E-value=29 Score=28.09 Aligned_cols=43 Identities=16% Similarity=0.289 Sum_probs=32.2
Q ss_pred HHHHHHHHHhc--------CchhHHhhhC--CCC---CHHHHHHHHHHHhhHHHHh
Q 023677 95 RLVLELHAKWG--------NRWSRIARKL--PGR---TDNEIKNYWRTHMRKKAQE 137 (279)
Q Consensus 95 ~~Ll~lv~~~G--------~~W~~Ia~~l--pgR---T~~q~knRw~~llr~~~~~ 137 (279)
-.|..+|.+.| +.|.+|+..| +.. ....+|+.|..+|-.--..
T Consensus 67 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~ 122 (145)
T 2kk0_A 67 FMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECE 122 (145)
T ss_dssp HHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHH
Confidence 45777888888 4799999987 332 2579999999988875444
No 118
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=42.58 E-value=34 Score=24.32 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 88 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 88 ~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
..|+.|-+.|. ++ ..|-.-.+||..| |-+...|+++-..++++
T Consensus 21 ~Lt~~e~~vl~-l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILK-LI-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHH-HH-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHH-HH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 46776665554 44 6788899999999 89999999988766665
No 119
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=42.18 E-value=40 Score=26.81 Aligned_cols=34 Identities=12% Similarity=0.026 Sum_probs=26.1
Q ss_pred HHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 100 LHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 100 lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
+.-..|-...+||..| |-+...|+++....+++-
T Consensus 151 l~~~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~L 184 (194)
T 1or7_A 151 LRELDGLSYEEIAAIM-DCPVGTVRSRIFRAREAI 184 (194)
T ss_dssp HHHTTCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3334566789999999 899999999887666654
No 120
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=41.47 E-value=21 Score=28.92 Aligned_cols=34 Identities=21% Similarity=0.196 Sum_probs=27.2
Q ss_pred HHHHHcCCCCHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Q 023677 59 KYFVVGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLE 99 (279)
Q Consensus 59 ~IA~~~~~Rt~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~ 99 (279)
.||..+.|+|+.++|+.+ +|. ..+|+||++.|.+
T Consensus 121 ~va~~i~gkt~eeir~~f------~I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 121 TVANMIKGKTPEEIRKTF------NIK-NDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHSSCCHHHHHHHT------TCC-CCSCTTHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHc------CCC-CCCCHHHHHHHHH
Confidence 488899999999999987 333 4699999988653
No 121
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=40.57 E-value=45 Score=26.32 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=41.4
Q ss_pred HHHHHHhhhhcCC-------cCHHHHHHHcCCC-----CHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH
Q 023677 42 LFRRYTNFRRSNS-------FNYMKYFVVGLNR-----TGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHA 102 (279)
Q Consensus 42 llr~l~~~~~~g~-------~~W~~IA~~~~~R-----t~~QCr~RW~n~L~P~l~kg~WT~eED~~Ll~lv~ 102 (279)
|++++..+...|+ ..|.+||..+.-- .+...+..|.++|.|= ...+++|-..|.+-|.
T Consensus 44 L~~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 44 LACFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 6666666666553 6899999977421 2346688999999872 2388899988887765
No 122
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=39.23 E-value=65 Score=24.49 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHH
Q 023677 88 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 125 (279)
Q Consensus 88 ~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~kn 125 (279)
.=|..-+..|..+....|..|..+|+.| |=+..+|.+
T Consensus 12 ~~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~~ 48 (111)
T 2yqf_A 12 SGTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDINR 48 (111)
T ss_dssp SCSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHHH
T ss_pred chHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 3477778888999999999999999999 777776654
No 123
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=39.22 E-value=49 Score=21.48 Aligned_cols=39 Identities=31% Similarity=0.265 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 94 ERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 94 D~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
+..++.+ -..|-.-.+||..| |-+...|+++...++++-
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~kl 41 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRKL 41 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 4556666 36688889999999 899999999887776653
No 124
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=39.20 E-value=26 Score=27.77 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 93 EERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 93 ED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
.+..++.++-..|-...+||..| |-+...|+++....+++-
T Consensus 139 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 179 (184)
T 2q1z_A 139 AQRALIERAFFGDLTHRELAAET-GLPLGTIKSRIRLALDRL 179 (184)
T ss_dssp HHHHHHHHHHHSCCSSCCSTTTC-CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 33444555556677889999999 899999999987766654
No 125
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.17 E-value=25 Score=27.60 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=26.6
Q ss_pred HHHHHHhhhhcCC-------cCHHHHHHHcCCCC----HHHHHHHHHHhcCC
Q 023677 42 LFRRYTNFRRSNS-------FNYMKYFVVGLNRT----GKSCRLRWVNYLHP 82 (279)
Q Consensus 42 llr~l~~~~~~g~-------~~W~~IA~~~~~Rt----~~QCr~RW~n~L~P 82 (279)
|++++..+...|+ ..|.+||..+.--. +.+.|..|.++|.|
T Consensus 44 Ly~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 44 LFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 5556665555543 48999999775432 34567777777764
No 126
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=39.07 E-value=32 Score=26.15 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=29.9
Q ss_pred HHHHHHHHHhc--------CchhHHhhhCC--CC---CHHHHHHHHHHHhhHH
Q 023677 95 RLVLELHAKWG--------NRWSRIARKLP--GR---TDNEIKNYWRTHMRKK 134 (279)
Q Consensus 95 ~~Ll~lv~~~G--------~~W~~Ia~~lp--gR---T~~q~knRw~~llr~~ 134 (279)
-.|..+|.+.| +.|.+|+..|. .. ...++|+.|...|-.-
T Consensus 36 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~y 88 (107)
T 1ig6_A 36 WTMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPY 88 (107)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTT
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 45777778887 47999999872 21 2468999999888864
No 127
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=38.88 E-value=45 Score=22.37 Aligned_cols=44 Identities=18% Similarity=0.134 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 87 GKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 87 g~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
...|+.|-+.|.. + ..|..-.+||..| |-+...|+.+...++++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3577777665554 4 6677899999999 88999999988776655
No 128
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=37.85 E-value=36 Score=24.35 Aligned_cols=41 Identities=17% Similarity=0.203 Sum_probs=30.0
Q ss_pred HHHHHHHHHHH----hcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 93 EERLVLELHAK----WGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 93 ED~~Ll~lv~~----~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
.+..++.+.-- .|-.+.+||..| |-|...|+++-...+++-
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34455555544 577899999999 999999999876665553
No 129
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=36.55 E-value=23 Score=27.92 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=26.7
Q ss_pred HHHHHHhhhhcCC-------cCHHHHHHHcCCCC----HHHHHHHHHHhcCC
Q 023677 42 LFRRYTNFRRSNS-------FNYMKYFVVGLNRT----GKSCRLRWVNYLHP 82 (279)
Q Consensus 42 llr~l~~~~~~g~-------~~W~~IA~~~~~Rt----~~QCr~RW~n~L~P 82 (279)
|++++..+...|+ ..|.+||..+.--+ +.+.+..|.++|.|
T Consensus 53 L~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 53 LFRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 4555555554443 48999999775433 35668888888764
No 130
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=36.46 E-value=36 Score=26.82 Aligned_cols=41 Identities=15% Similarity=0.163 Sum_probs=28.2
Q ss_pred HHHHHHhhhhcCC-------cCHHHHHHHcCCC-----CHHHHHHHHHHhcCC
Q 023677 42 LFRRYTNFRRSNS-------FNYMKYFVVGLNR-----TGKSCRLRWVNYLHP 82 (279)
Q Consensus 42 llr~l~~~~~~g~-------~~W~~IA~~~~~R-----t~~QCr~RW~n~L~P 82 (279)
|++++..+...|+ ..|.+||..+.-- .+.+.+..|.++|.|
T Consensus 54 L~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 54 LYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 5566665555553 5799999976532 246678889988876
No 131
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=36.20 E-value=70 Score=25.79 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=36.7
Q ss_pred HHHHHHhhhhcCC-------cCHHHHHHHcCCC-----CHHHHHHHHHHhcCC--CCCCCCCCHHHHHHHH
Q 023677 42 LFRRYTNFRRSNS-------FNYMKYFVVGLNR-----TGKSCRLRWVNYLHP--GLKRGKMTPQEERLVL 98 (279)
Q Consensus 42 llr~l~~~~~~g~-------~~W~~IA~~~~~R-----t~~QCr~RW~n~L~P--~l~kg~WT~eED~~Ll 98 (279)
|++++..+...|+ ..|.+||..+.-- .+.+.+..|.++|.| ...+|.=.++|=+.-+
T Consensus 66 L~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~ 136 (145)
T 2kk0_A 66 LFMLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAI 136 (145)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5566665555553 5799999976532 256779999999988 4445555555544433
No 132
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=35.76 E-value=25 Score=27.28 Aligned_cols=28 Identities=7% Similarity=-0.127 Sum_probs=23.2
Q ss_pred cCHHHHHHHcCCCCHHHHHHHHHHhcCC
Q 023677 55 FNYMKYFVVGLNRTGKSCRLRWVNYLHP 82 (279)
Q Consensus 55 ~~W~~IA~~~~~Rt~~QCr~RW~n~L~P 82 (279)
..|.+||..+.--.+...+..|.++|.|
T Consensus 71 ~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 71 QQWSMVAQRLQISDYQQLESIYFRILLP 98 (116)
T ss_dssp TCHHHHHHHHTSCCTTHHHHHHHHHHSH
T ss_pred CcHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 5899999977665678889999998875
No 133
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=35.18 E-value=25 Score=26.64 Aligned_cols=41 Identities=15% Similarity=0.188 Sum_probs=27.0
Q ss_pred HHHHHHhhhhcCC-------cCHHHHHHHcCCCC----HHHHHHHHHHhcCC
Q 023677 42 LFRRYTNFRRSNS-------FNYMKYFVVGLNRT----GKSCRLRWVNYLHP 82 (279)
Q Consensus 42 llr~l~~~~~~g~-------~~W~~IA~~~~~Rt----~~QCr~RW~n~L~P 82 (279)
|++++..+...|+ ..|.+||..+.--. +.+.+..|.++|.|
T Consensus 46 L~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 46 LYTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 5555555555443 47999999775433 45667778887764
No 134
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=34.38 E-value=43 Score=24.08 Aligned_cols=43 Identities=21% Similarity=0.109 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 88 KMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 88 ~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
..|+.|-+.| .++ ..|-.-.+||..| |-+...|+++-...+++
T Consensus 29 ~Lt~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEIL-LLI-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHH-HHH-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3566665555 444 6788899999999 89999999988776665
No 135
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.10 E-value=70 Score=24.29 Aligned_cols=41 Identities=20% Similarity=0.099 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 93 EERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 93 ED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
.+..++.++-..|-...+||..| |-+...|+++....+++-
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~kL 69 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDLV 69 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44566667767788999999999 899999999877665543
No 136
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=33.99 E-value=18 Score=28.63 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=29.3
Q ss_pred HHHHHHhhhhcCC-------cCHHHHHHHcCCCCHHHHHHHHHHhcCC
Q 023677 42 LFRRYTNFRRSNS-------FNYMKYFVVGLNRTGKSCRLRWVNYLHP 82 (279)
Q Consensus 42 llr~l~~~~~~g~-------~~W~~IA~~~~~Rt~~QCr~RW~n~L~P 82 (279)
|++++..+...|+ ..|.+||..+.--.+.+.+..|.++|.|
T Consensus 50 L~~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 50 LFYLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLP 97 (123)
T ss_dssp TTHHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 5556665555543 4799999977655577778888888765
No 137
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.33 E-value=66 Score=26.25 Aligned_cols=41 Identities=15% Similarity=0.131 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 93 EERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 93 ED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
.+..++.++-..|-...+||..| |-|...|+.+....+++-
T Consensus 191 ~~r~vl~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~L 231 (239)
T 1rp3_A 191 REKLVIQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALERL 231 (239)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHHH
Confidence 33444445445577899999999 999999999877666553
No 138
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=32.24 E-value=56 Score=24.87 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=25.4
Q ss_pred HHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 102 AKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 102 ~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
...|-...+||..| |-+...|+++....+++-
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV~~~~~ra~~~L 152 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSIDNTIQRIRKKS 152 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 34567789999999 899999999887666553
No 139
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.98 E-value=33 Score=27.02 Aligned_cols=42 Identities=17% Similarity=0.041 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 92 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 92 eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
+++..++.+....|-.-.+||..| |-+.+.|++|-...+++-
T Consensus 96 ~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV~~~l~rar~~L 137 (157)
T 2lfw_A 96 PLSRQALLLTAMEGFSPEDAAYLI-EVDTSEVETLVTEALAEI 137 (157)
T ss_dssp TTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 345556666666677899999999 999999999876555543
No 140
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=31.87 E-value=42 Score=26.00 Aligned_cols=31 Identities=23% Similarity=0.488 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCchhHHhhhCCCCCHHHHHH
Q 023677 94 ERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 125 (279)
Q Consensus 94 D~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~kn 125 (279)
|..|..++...|..|..+|+.| |=+..+|.+
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I~~ 43 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREVQR 43 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHHHH
Confidence 4567778899999999999999 777776654
No 141
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=31.43 E-value=50 Score=25.72 Aligned_cols=42 Identities=14% Similarity=0.313 Sum_probs=27.8
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHH
Q 023677 79 YLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIK 124 (279)
Q Consensus 79 ~L~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~k 124 (279)
.+.+.+-...=|.+ .|..++...|..|..+|+.| |=++.+|.
T Consensus 12 ~~~~~~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dId 53 (115)
T 2o71_A 12 GIPSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIY 53 (115)
T ss_dssp ----CGGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHHH
T ss_pred CCCchhccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 45555555666666 45666889999999999998 66666543
No 142
>2lt8_A Eurocin; A/B-fold, cysteine stabilised, antimicrobial protein; NMR {Eurotium amstelodami}
Probab=31.30 E-value=12 Score=23.77 Aligned_cols=15 Identities=40% Similarity=0.928 Sum_probs=13.5
Q ss_pred CCCcccccccccccc
Q 023677 4 AGGHTAGELCAAVWR 18 (279)
Q Consensus 4 ~gg~~~g~~C~~rW~ 18 (279)
+||-++|--|+..|-
T Consensus 18 lgggrtggycagpwy 32 (42)
T 2lt8_A 18 LGGGRTGGYCAGPWY 32 (42)
T ss_dssp HCTTCCEEEEECCSS
T ss_pred hcCCCcCCcccCccc
Confidence 799999999999994
No 143
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=30.80 E-value=46 Score=25.85 Aligned_cols=43 Identities=14% Similarity=0.309 Sum_probs=28.6
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHH
Q 023677 79 YLHPGLKRGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 125 (279)
Q Consensus 79 ~L~P~l~kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~kn 125 (279)
.+.+.+-...=|.+ .|..++...|..|..+|+.| |=++.+|..
T Consensus 12 ~~~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dId~ 54 (114)
T 2of5_A 12 GIPSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDIYR 54 (114)
T ss_dssp ----CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHHHH
T ss_pred CCCchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 45566666666666 45666889999999999998 766665533
No 144
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=28.49 E-value=52 Score=26.32 Aligned_cols=43 Identities=12% Similarity=0.125 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhcC-chhHHhhhCCCCCHHHHHHHHHHHhhHHH
Q 023677 92 QEERLVLELHAKWGN-RWSRIARKLPGRTDNEIKNYWRTHMRKKA 135 (279)
Q Consensus 92 eED~~Ll~lv~~~G~-~W~~Ia~~lpgRT~~q~knRw~~llr~~~ 135 (279)
+-|..||++.++-|. .+..||+.+ |=|...|+.|.+.+.+...
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~l-g~s~~tv~~rl~~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKV-GLSTTPCWRRIQKMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 458888988888774 699999999 9999999999988877653
No 145
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=26.41 E-value=72 Score=24.22 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCchhHHhhhCCCCCHHHHHH
Q 023677 94 ERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 125 (279)
Q Consensus 94 D~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~kn 125 (279)
+..|-.++...|..|..+|++| |=++.+|.+
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I~~ 48 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEIRQ 48 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHHHH
Confidence 4555667788899999999999 766666544
No 146
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=26.26 E-value=1.3e+02 Score=25.25 Aligned_cols=59 Identities=7% Similarity=-0.030 Sum_probs=34.6
Q ss_pred HHHHHHHHhhhhcCCcCHHHHHHHcCCCC---HHHHHHHHHHhcC-CCCCCCCCCHHHHHHHH
Q 023677 40 GRLFRRYTNFRRSNSFNYMKYFVVGLNRT---GKSCRLRWVNYLH-PGLKRGKMTPQEERLVL 98 (279)
Q Consensus 40 ~~llr~l~~~~~~g~~~W~~IA~~~~~Rt---~~QCr~RW~n~L~-P~l~kg~WT~eED~~Ll 98 (279)
+.|++.|....+.....=..|-..+-+.+ +.+.-+.|..-.. |....|-||.++|+.|.
T Consensus 64 ~~Lv~~l~~e~Gi~~~fs~~Ii~ALs~tsM~~p~~VL~~l~~GkgiP~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 64 EKLVQDLCDETGIRKNFSTSILTCLSGDLMVFPRYFLNMFKDNVNPPPNVPGIWTHDDDESLK 126 (168)
T ss_dssp HHHHHHHHHHHCBCHHHHHHHHHHTTTCGGGHHHHHHHHHHHTCSSCTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHHHhCcccccHHHHHHHhcCCcccCHHHHHHHHHhCCCCCCCCCCCCChhhHHHHH
Confidence 34455553333332212223334444443 3367777777666 67889999999999886
No 147
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=25.53 E-value=2e+02 Score=21.18 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 86 RGKMTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 86 kg~WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
....|+.|-+.|.- + ..|-.-.+||..| |-+...|+++-..++++-
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L-~iS~~TV~~~l~ri~~KL 77 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKL-NRSIKTISSQKKSAMMKL 77 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 45688888877654 4 3688899999999 889999999887777663
No 148
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=24.60 E-value=1.1e+02 Score=23.28 Aligned_cols=43 Identities=14% Similarity=0.144 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHHHHHHHhhH
Q 023677 89 MTPQEERLVLELHAKWGNRWSRIARKLPGRTDNEIKNYWRTHMRK 133 (279)
Q Consensus 89 WT~eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~knRw~~llr~ 133 (279)
.++. +..++.++-..|-.-.+||..+ |-|...|+++.....++
T Consensus 23 L~~~-~r~vl~l~y~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 65 (113)
T 1s7o_A 23 LTDK-QMNYIELYYADDYSLAEIADEF-GVSRQAVYDNIKRTEKI 65 (113)
T ss_dssp SCHH-HHHHHHHHHHTCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 4444 4556667667788999999999 99999999987766554
No 149
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=24.01 E-value=1.4e+02 Score=23.12 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhc-CchhHHhhhCCCCCHHHHHHHHHHHhhHHH
Q 023677 92 QEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRKKA 135 (279)
Q Consensus 92 eED~~Ll~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~llr~~~ 135 (279)
+-|..||.+.++.| -.+..||+.+ |=+...|.+|.+.+.+...
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~l-g~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADIL-NTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHT-TSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCC
Confidence 44667777777766 4799999999 8899999999988876643
No 150
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=21.37 E-value=75 Score=23.37 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCchhHHhhhCCCCCHHHHHH
Q 023677 92 QEERLVLELHAKWGNRWSRIARKLPGRTDNEIKN 125 (279)
Q Consensus 92 eED~~Ll~lv~~~G~~W~~Ia~~lpgRT~~q~kn 125 (279)
.-+..+-.++...|..|..+|+.| |=++.+|..
T Consensus 12 ~l~~~~~~ia~~lg~~Wk~Lar~L-g~~~~~I~~ 44 (99)
T 1fad_A 12 YLQVAFDIVCDNVGRDWKRLAREL-KVSEAKMDG 44 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHH
T ss_pred cHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHHH
Confidence 334456667788899999999999 777766644
No 151
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=20.46 E-value=1.2e+02 Score=24.56 Aligned_cols=42 Identities=12% Similarity=0.208 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhc-CchhHHhhhCCCCCHHHHHHHHHHHhhHH
Q 023677 92 QEERLVLELHAKWG-NRWSRIARKLPGRTDNEIKNYWRTHMRKK 134 (279)
Q Consensus 92 eED~~Ll~lv~~~G-~~W~~Ia~~lpgRT~~q~knRw~~llr~~ 134 (279)
+-|..||++.++.| -.+..||+.+ |=+...|+.|.+.+.+..
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~l-glS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKIT-GLAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHH-TSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 45777888887776 4699999999 889999999998877654
No 152
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.28 E-value=1.7e+02 Score=20.33 Aligned_cols=50 Identities=6% Similarity=0.155 Sum_probs=36.7
Q ss_pred hcCCCCCCCCCCHHHHHHHHHHHHHhc--Cc--hhHHhhhCCCCCHHHHHHHHHH
Q 023677 79 YLHPGLKRGKMTPQEERLVLELHAKWG--NR--WSRIARKLPGRTDNEIKNYWRT 129 (279)
Q Consensus 79 ~L~P~l~kg~WT~eED~~Ll~lv~~~G--~~--W~~Ia~~lpgRT~~q~knRw~~ 129 (279)
.++|...+..||.+.-..|...+.... .. =..||..+ |=+..+|+.-|.+
T Consensus 5 ~~~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~-~l~~~qV~~WFqN 58 (76)
T 2dn0_A 5 SSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVT-GLSTREVRKWFSD 58 (76)
T ss_dssp CSCCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHH-CCCHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHh-CCChHHhhHHhHH
Confidence 467888899999999888888776533 22 24567777 8899999885543
Done!