Query 023678
Match_columns 279
No_of_seqs 240 out of 2127
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:50:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK06728 aspartate-semialdehyd 100.0 1.4E-65 3E-70 483.3 24.6 230 39-274 5-242 (347)
2 TIGR01745 asd_gamma aspartate- 100.0 2.8E-63 6.1E-68 469.2 22.1 231 40-274 1-263 (366)
3 PRK06598 aspartate-semialdehyd 100.0 3.2E-63 6.9E-68 470.0 22.2 234 39-274 1-265 (369)
4 COG0136 Asd Aspartate-semialde 100.0 1.3E-62 2.9E-67 456.8 21.9 231 39-276 1-235 (334)
5 PRK08040 putative semialdehyde 100.0 2.6E-61 5.6E-66 453.6 24.3 231 38-274 3-233 (336)
6 PLN02383 aspartate semialdehyd 100.0 1.4E-60 3.1E-65 450.4 25.3 237 38-274 6-242 (344)
7 PRK05671 aspartate-semialdehyd 100.0 2.2E-60 4.8E-65 447.7 24.5 231 39-274 4-234 (336)
8 PRK06901 aspartate-semialdehyd 100.0 1.4E-58 3E-63 429.0 22.2 217 37-274 1-219 (322)
9 PRK14874 aspartate-semialdehyd 100.0 9.6E-55 2.1E-59 409.4 24.1 232 39-274 1-234 (334)
10 TIGR01296 asd_B aspartate-semi 100.0 1.2E-54 2.7E-59 409.4 23.3 230 41-274 1-237 (339)
11 TIGR01850 argC N-acetyl-gamma- 100.0 4.1E-43 8.9E-48 331.9 17.5 203 40-274 1-232 (346)
12 COG0002 ArgC Acetylglutamate s 100.0 1.2E-42 2.5E-47 323.6 15.0 212 38-264 1-266 (349)
13 KOG4777 Aspartate-semialdehyde 100.0 4E-43 8.6E-48 313.5 9.0 227 40-268 4-250 (361)
14 PLN02968 Probable N-acetyl-gam 100.0 1.3E-41 2.9E-46 325.1 18.8 203 38-274 37-267 (381)
15 PRK11863 N-acetyl-gamma-glutam 100.0 1.6E-41 3.4E-46 316.3 16.7 202 39-264 2-232 (313)
16 PRK00436 argC N-acetyl-gamma-g 100.0 4.8E-41 1E-45 317.5 18.2 196 39-265 2-224 (343)
17 TIGR00978 asd_EA aspartate-sem 100.0 2.7E-40 5.9E-45 312.0 18.9 205 40-274 1-229 (341)
18 TIGR01851 argC_other N-acetyl- 100.0 1.4E-40 3.1E-45 308.7 14.5 194 40-252 2-217 (310)
19 PRK08664 aspartate-semialdehyd 100.0 1.1E-38 2.4E-43 301.9 18.5 207 37-274 1-232 (349)
20 PRK13535 erythrose 4-phosphate 100.0 7.3E-36 1.6E-40 280.6 18.6 203 39-274 1-232 (336)
21 PRK08955 glyceraldehyde-3-phos 100.0 1E-33 2.2E-38 266.1 18.6 199 40-274 3-230 (334)
22 PLN03096 glyceraldehyde-3-phos 100.0 3.1E-33 6.8E-38 266.6 20.0 199 40-274 61-290 (395)
23 TIGR01532 E4PD_g-proteo D-eryt 100.0 1.8E-33 4E-38 263.8 17.2 194 41-270 1-224 (325)
24 PRK15425 gapA glyceraldehyde-3 100.0 5E-32 1.1E-36 253.9 20.8 193 40-270 3-223 (331)
25 TIGR01534 GAPDH-I glyceraldehy 100.0 2.1E-31 4.6E-36 249.7 19.6 198 41-274 1-228 (327)
26 PLN02358 glyceraldehyde-3-phos 100.0 1.3E-30 2.8E-35 245.4 21.9 200 39-274 5-235 (338)
27 PTZ00023 glyceraldehyde-3-phos 100.0 2.7E-31 5.9E-36 249.5 16.8 190 40-264 3-223 (337)
28 PLN02272 glyceraldehyde-3-phos 100.0 3.2E-30 7E-35 247.3 20.1 192 39-270 85-308 (421)
29 PRK07403 glyceraldehyde-3-phos 100.0 4.5E-29 9.7E-34 234.4 16.0 198 39-261 1-226 (337)
30 PRK07729 glyceraldehyde-3-phos 100.0 3.4E-28 7.4E-33 228.7 18.1 189 40-243 3-225 (343)
31 KOG4354 N-acetyl-gamma-glutamy 100.0 6.6E-29 1.4E-33 221.0 7.4 218 37-264 17-258 (340)
32 PF01118 Semialdhyde_dh: Semia 100.0 1.9E-28 4E-33 198.9 9.4 112 41-154 1-119 (121)
33 PRK04207 glyceraldehyde-3-phos 99.9 1.3E-25 2.7E-30 212.4 18.9 153 39-202 1-171 (341)
34 PRK08300 acetaldehyde dehydrog 99.9 1.9E-25 4.2E-30 207.1 14.6 170 37-219 2-180 (302)
35 PLN02237 glyceraldehyde-3-phos 99.9 8E-25 1.7E-29 210.7 18.3 158 39-203 75-261 (442)
36 PTZ00353 glycosomal glyceralde 99.9 3E-23 6.5E-28 195.3 17.0 186 40-270 3-227 (342)
37 PRK08289 glyceraldehyde-3-phos 99.9 9.5E-21 2.1E-25 183.2 18.9 196 39-270 127-361 (477)
38 TIGR03215 ac_ald_DH_ac acetald 99.9 1.8E-20 4E-25 173.1 17.2 167 40-219 2-174 (285)
39 PF02774 Semialdhyde_dhC: Semi 99.8 6E-20 1.3E-24 159.5 8.5 94 180-274 1-97 (184)
40 smart00859 Semialdhyde_dh Semi 99.7 1.1E-16 2.3E-21 129.4 9.7 112 41-154 1-121 (122)
41 PTZ00434 cytosolic glyceraldeh 99.7 1.3E-15 2.8E-20 144.0 16.7 157 38-202 2-199 (361)
42 COG0057 GapA Glyceraldehyde-3- 99.7 2.8E-15 6E-20 139.7 15.6 155 39-204 1-185 (335)
43 TIGR01546 GAPDH-II_archae glyc 99.4 4.6E-12 1E-16 119.5 13.7 147 42-199 1-165 (333)
44 COG4569 MhpF Acetaldehyde dehy 99.3 3.2E-12 6.9E-17 112.3 6.3 169 39-219 4-181 (310)
45 PF00044 Gp_dh_N: Glyceraldehy 99.2 3.5E-10 7.6E-15 95.7 12.2 122 40-171 1-151 (151)
46 smart00846 Gp_dh_N Glyceraldeh 99.0 7.2E-09 1.6E-13 87.5 13.4 121 40-171 1-149 (149)
47 KOG4039 Serine/threonine kinas 98.5 6.5E-07 1.4E-11 77.7 9.4 127 37-170 16-167 (238)
48 PF01113 DapB_N: Dihydrodipico 98.4 7.5E-07 1.6E-11 72.6 6.0 94 40-135 1-101 (124)
49 TIGR01921 DAP-DH diaminopimela 98.3 1.8E-06 3.9E-11 81.5 7.4 89 37-132 1-91 (324)
50 PRK00048 dihydrodipicolinate r 98.2 4.4E-06 9.6E-11 76.3 8.9 93 39-135 1-94 (257)
51 COG2910 Putative NADH-flavin r 98.2 1.2E-05 2.5E-10 70.3 10.7 99 40-143 1-117 (211)
52 PRK13302 putative L-aspartate 98.2 3.7E-06 7.9E-11 77.5 6.2 92 37-132 4-98 (271)
53 PRK13303 L-aspartate dehydroge 98.1 9.9E-06 2.1E-10 74.3 7.5 91 39-133 1-93 (265)
54 TIGR00036 dapB dihydrodipicoli 98.0 1.8E-05 3.8E-10 72.8 8.5 94 39-135 1-102 (266)
55 PF13460 NAD_binding_10: NADH( 98.0 1.9E-05 4.1E-10 66.8 6.9 87 42-135 1-100 (183)
56 CHL00194 ycf39 Ycf39; Provisio 97.9 3.1E-05 6.7E-10 72.0 8.3 90 40-133 1-110 (317)
57 COG0289 DapB Dihydrodipicolina 97.9 8.7E-05 1.9E-09 68.0 10.1 95 39-135 2-103 (266)
58 PF03807 F420_oxidored: NADP o 97.9 8.9E-06 1.9E-10 62.4 2.8 91 41-133 1-95 (96)
59 PRK07634 pyrroline-5-carboxyla 97.8 0.00014 3.1E-09 64.9 9.9 173 37-219 2-192 (245)
60 PRK07679 pyrroline-5-carboxyla 97.8 0.00018 3.9E-09 66.1 10.1 170 37-218 1-191 (279)
61 PRK13304 L-aspartate dehydroge 97.7 5.1E-05 1.1E-09 69.6 6.1 91 39-133 1-93 (265)
62 COG2085 Predicted dinucleotide 97.6 0.00012 2.6E-09 65.1 6.4 106 39-149 1-112 (211)
63 PRK13301 putative L-aspartate 97.6 0.00012 2.6E-09 67.3 6.5 95 39-135 2-97 (267)
64 PF03435 Saccharop_dh: Sacchar 97.6 0.00015 3.2E-09 69.5 6.5 88 42-132 1-98 (386)
65 PF10727 Rossmann-like: Rossma 97.5 6.7E-05 1.5E-09 61.8 3.3 93 39-136 10-108 (127)
66 PF01408 GFO_IDH_MocA: Oxidore 97.5 6.9E-05 1.5E-09 59.4 3.3 86 40-129 1-90 (120)
67 TIGR03649 ergot_EASG ergot alk 97.5 0.00022 4.8E-09 64.8 7.0 89 41-133 1-105 (285)
68 PLN02819 lysine-ketoglutarate 97.5 0.00022 4.7E-09 76.5 7.8 92 38-132 568-679 (1042)
69 PRK11579 putative oxidoreducta 97.5 0.00027 5.9E-09 66.8 7.3 86 39-129 4-92 (346)
70 PRK12491 pyrroline-5-carboxyla 97.5 0.00064 1.4E-08 62.7 9.4 169 40-218 3-189 (272)
71 COG1748 LYS9 Saccharopine dehy 97.5 0.00026 5.5E-09 68.5 6.8 92 39-134 1-101 (389)
72 PLN02206 UDP-glucuronate decar 97.5 0.00043 9.3E-09 68.0 8.4 94 38-135 118-235 (442)
73 PRK14982 acyl-ACP reductase; P 97.5 0.00016 3.4E-09 68.9 5.0 139 39-189 155-312 (340)
74 KOG0657 Glyceraldehyde 3-phosp 97.4 7.5E-05 1.6E-09 68.4 2.4 94 101-203 74-167 (285)
75 PRK06349 homoserine dehydrogen 97.4 0.00041 9E-09 67.9 7.8 91 37-130 1-102 (426)
76 COG0673 MviM Predicted dehydro 97.4 0.0002 4.3E-09 66.7 5.2 91 37-129 1-95 (342)
77 PRK06444 prephenate dehydrogen 97.4 0.0003 6.4E-09 62.1 5.7 61 40-134 1-61 (197)
78 PF05368 NmrA: NmrA-like famil 97.4 0.0001 2.3E-09 65.1 2.8 84 42-129 1-98 (233)
79 PRK08125 bifunctional UDP-gluc 97.4 0.00089 1.9E-08 68.8 10.0 104 22-134 304-433 (660)
80 PRK11199 tyrA bifunctional cho 97.4 0.00035 7.7E-09 67.2 6.5 78 39-134 98-177 (374)
81 PRK06928 pyrroline-5-carboxyla 97.4 0.0017 3.8E-08 59.7 10.8 168 39-216 1-187 (277)
82 TIGR01915 npdG NADPH-dependent 97.3 0.00058 1.3E-08 60.6 7.1 95 40-138 1-107 (219)
83 PLN02166 dTDP-glucose 4,6-dehy 97.3 0.0008 1.7E-08 66.0 8.7 93 39-135 120-236 (436)
84 PLN02688 pyrroline-5-carboxyla 97.3 0.004 8.6E-08 56.4 12.3 169 40-218 1-186 (266)
85 PF03447 NAD_binding_3: Homose 97.3 0.00027 5.8E-09 56.4 3.9 84 48-132 2-90 (117)
86 PRK08818 prephenate dehydrogen 97.3 0.00085 1.8E-08 64.6 7.7 82 39-135 4-91 (370)
87 PLN02256 arogenate dehydrogena 97.3 0.0013 2.8E-08 61.7 8.7 89 37-133 34-128 (304)
88 COG0345 ProC Pyrroline-5-carbo 97.2 0.001 2.2E-08 61.4 7.7 170 39-218 1-186 (266)
89 PRK07417 arogenate dehydrogena 97.2 0.00044 9.6E-09 63.6 5.0 89 40-134 1-93 (279)
90 COG0287 TyrA Prephenate dehydr 97.2 0.00078 1.7E-08 62.5 6.2 93 39-135 3-101 (279)
91 PRK06270 homoserine dehydrogen 97.2 0.00066 1.4E-08 64.5 5.6 91 39-130 2-123 (341)
92 COG1712 Predicted dinucleotide 97.1 0.00073 1.6E-08 60.8 5.4 147 40-204 1-151 (255)
93 PLN02427 UDP-apiose/xylose syn 97.1 0.0028 6.1E-08 60.4 9.7 33 39-73 14-46 (386)
94 PRK11880 pyrroline-5-carboxyla 97.1 0.00068 1.5E-08 61.5 5.1 95 39-136 2-98 (267)
95 PRK11908 NAD-dependent epimera 97.1 0.0024 5.3E-08 59.8 8.9 92 39-134 1-119 (347)
96 PRK08655 prephenate dehydrogen 97.1 0.00086 1.9E-08 65.9 6.0 89 40-133 1-93 (437)
97 PLN02775 Probable dihydrodipic 97.1 0.0028 6.1E-08 58.9 9.1 127 34-177 6-142 (286)
98 COG2344 AT-rich DNA-binding pr 97.1 0.00094 2E-08 58.5 5.3 94 38-138 83-183 (211)
99 PLN02657 3,8-divinyl protochlo 97.1 0.0036 7.9E-08 60.3 9.9 34 37-73 58-91 (390)
100 PRK06476 pyrroline-5-carboxyla 97.0 0.00048 1E-08 62.4 3.3 96 40-138 1-99 (258)
101 PRK07502 cyclohexadienyl dehyd 97.0 0.0014 3E-08 61.0 6.2 92 39-133 6-101 (307)
102 PLN02695 GDP-D-mannose-3',5'-e 97.0 0.0016 3.6E-08 62.1 6.7 32 39-73 21-52 (370)
103 PRK08507 prephenate dehydrogen 96.9 0.0013 2.7E-08 60.3 5.2 90 40-134 1-93 (275)
104 PF00056 Ldh_1_N: lactate/mala 96.9 0.0014 3E-08 54.6 5.0 72 40-112 1-80 (141)
105 PLN00141 Tic62-NAD(P)-related 96.9 0.0066 1.4E-07 54.3 9.6 31 39-72 17-47 (251)
106 PF03446 NAD_binding_2: NAD bi 96.9 0.00035 7.6E-09 59.2 1.2 88 39-134 1-96 (163)
107 cd05294 LDH-like_MDH_nadp A la 96.9 0.0065 1.4E-07 57.0 9.6 71 40-111 1-82 (309)
108 cd01080 NAD_bind_m-THF_DH_Cycl 96.9 0.0079 1.7E-07 51.8 9.3 108 38-171 43-150 (168)
109 PRK05472 redox-sensing transcr 96.9 0.0028 6.1E-08 56.1 6.7 94 39-138 84-183 (213)
110 cd01065 NAD_bind_Shikimate_DH 96.9 0.0018 3.9E-08 53.5 5.1 91 39-134 19-118 (155)
111 PTZ00431 pyrroline carboxylate 96.8 0.016 3.5E-07 52.7 11.6 163 38-218 2-182 (260)
112 PRK12320 hypothetical protein; 96.8 0.0032 6.9E-08 65.3 7.6 90 40-135 1-104 (699)
113 PRK07680 late competence prote 96.8 0.0016 3.4E-08 59.6 4.7 95 40-136 1-100 (273)
114 cd01336 MDH_cytoplasmic_cytoso 96.7 0.0039 8.5E-08 59.0 6.9 72 39-111 2-88 (325)
115 PRK14194 bifunctional 5,10-met 96.7 0.0091 2E-07 56.0 9.1 95 39-155 159-254 (301)
116 PLN00016 RNA-binding protein; 96.7 0.0075 1.6E-07 57.5 8.6 92 39-133 52-165 (378)
117 PRK00094 gpsA NAD(P)H-dependen 96.7 0.0028 6E-08 58.8 5.5 91 39-135 1-108 (325)
118 PLN02712 arogenate dehydrogena 96.7 0.0034 7.4E-08 64.8 6.6 89 38-134 368-462 (667)
119 PRK11559 garR tartronate semia 96.6 0.0023 4.9E-08 59.0 4.5 89 39-135 2-99 (296)
120 KOG1502 Flavonol reductase/cin 96.6 0.0067 1.5E-07 57.4 7.6 68 38-110 5-87 (327)
121 COG0702 Predicted nucleoside-d 96.6 0.0033 7.3E-08 55.9 5.3 68 40-111 1-73 (275)
122 PRK14619 NAD(P)H-dependent gly 96.6 0.0067 1.5E-07 56.5 7.3 77 39-134 4-84 (308)
123 TIGR01777 yfcH conserved hypot 96.6 0.0096 2.1E-07 53.5 8.1 63 42-111 1-67 (292)
124 PRK06545 prephenate dehydrogen 96.6 0.0042 9.2E-08 59.3 6.0 89 41-134 2-97 (359)
125 TIGR01761 thiaz-red thiazoliny 96.6 0.0022 4.9E-08 61.1 4.0 86 38-129 2-94 (343)
126 cd05213 NAD_bind_Glutamyl_tRNA 96.5 0.0045 9.7E-08 58.0 5.9 97 38-140 177-281 (311)
127 PRK10206 putative oxidoreducta 96.5 0.0037 8E-08 59.3 5.4 88 39-129 1-92 (344)
128 PF01488 Shikimate_DH: Shikima 96.5 0.0036 7.8E-08 51.5 4.6 89 39-133 12-110 (135)
129 cd01078 NAD_bind_H4MPT_DH NADP 96.5 0.005 1.1E-07 53.3 5.7 92 39-135 28-132 (194)
130 PRK11064 wecC UDP-N-acetyl-D-m 96.5 0.0033 7.2E-08 61.3 4.9 91 37-134 1-121 (415)
131 PLN03209 translocon at the inn 96.5 0.0049 1.1E-07 62.5 6.2 32 39-73 80-111 (576)
132 PRK08229 2-dehydropantoate 2-r 96.5 0.0095 2.1E-07 55.8 7.7 93 39-135 2-110 (341)
133 TIGR02130 dapB_plant dihydrodi 96.5 0.0099 2.1E-07 55.1 7.6 120 40-176 1-130 (275)
134 PLN02712 arogenate dehydrogena 96.5 0.005 1.1E-07 63.6 6.1 88 39-135 52-146 (667)
135 TIGR00872 gnd_rel 6-phosphoglu 96.4 0.0047 1E-07 57.4 5.3 90 40-135 1-96 (298)
136 cd01337 MDH_glyoxysomal_mitoch 96.4 0.0096 2.1E-07 56.1 7.2 71 40-111 1-78 (310)
137 PRK05447 1-deoxy-D-xylulose 5- 96.4 0.01 2.3E-07 57.4 7.5 89 39-129 1-119 (385)
138 PF02629 CoA_binding: CoA bind 96.4 0.01 2.2E-07 46.0 6.0 83 39-129 3-90 (96)
139 COG5322 Predicted dehydrogenas 96.3 0.0094 2E-07 55.2 6.5 143 40-189 168-326 (351)
140 PF04321 RmlD_sub_bind: RmlD s 96.3 0.011 2.3E-07 54.6 7.0 85 40-139 1-107 (286)
141 PRK06719 precorrin-2 dehydroge 96.3 0.026 5.7E-07 47.8 8.8 82 39-126 13-95 (157)
142 PLN02214 cinnamoyl-CoA reducta 96.3 0.034 7.3E-07 52.3 10.4 91 39-133 10-127 (342)
143 PRK05086 malate dehydrogenase; 96.3 0.014 2.9E-07 55.0 7.6 70 40-111 1-79 (312)
144 TIGR00465 ilvC ketol-acid redu 96.3 0.031 6.7E-07 52.7 10.0 162 39-208 3-193 (314)
145 COG0460 ThrA Homoserine dehydr 96.3 0.014 3E-07 55.5 7.6 91 37-129 1-110 (333)
146 PRK06392 homoserine dehydrogen 96.2 0.018 3.9E-07 54.6 8.1 91 40-131 1-115 (326)
147 TIGR03026 NDP-sugDHase nucleot 96.2 0.0093 2E-07 57.9 6.3 89 40-133 1-121 (411)
148 PRK15461 NADH-dependent gamma- 96.2 0.0046 1E-07 57.4 4.0 89 40-135 2-98 (296)
149 PTZ00325 malate dehydrogenase; 96.2 0.018 3.8E-07 54.6 7.9 73 39-112 8-87 (321)
150 PRK14618 NAD(P)H-dependent gly 96.2 0.0061 1.3E-07 57.2 4.8 91 39-135 4-107 (328)
151 TIGR03466 HpnA hopanoid-associ 96.2 0.012 2.6E-07 53.8 6.6 68 40-110 1-73 (328)
152 TIGR01214 rmlD dTDP-4-dehydror 96.2 0.008 1.7E-07 54.3 5.3 29 41-72 1-29 (287)
153 PRK14188 bifunctional 5,10-met 96.2 0.026 5.7E-07 52.8 8.8 97 38-155 157-257 (296)
154 PRK12825 fabG 3-ketoacyl-(acyl 96.2 0.012 2.6E-07 51.2 6.1 27 38-64 5-31 (249)
155 PRK05678 succinyl-CoA syntheta 96.2 0.03 6.6E-07 52.3 9.0 91 39-137 8-102 (291)
156 TIGR02853 spore_dpaA dipicolin 96.1 0.0062 1.3E-07 56.6 4.3 91 39-135 151-243 (287)
157 TIGR01759 MalateDH-SF1 malate 96.1 0.01 2.2E-07 56.2 5.8 74 38-111 2-89 (323)
158 cd01338 MDH_choloroplast_like 96.1 0.013 2.8E-07 55.5 6.5 73 39-111 2-88 (322)
159 PF13380 CoA_binding_2: CoA bi 96.1 0.033 7.1E-07 44.8 7.9 83 41-133 2-88 (116)
160 PRK06223 malate dehydrogenase; 96.1 0.027 5.9E-07 52.3 8.3 70 39-111 2-80 (307)
161 TIGR03589 PseB UDP-N-acetylglu 96.1 0.041 8.8E-07 51.4 9.4 103 39-143 4-135 (324)
162 PF01210 NAD_Gly3P_dh_N: NAD-d 96.1 0.006 1.3E-07 51.4 3.5 116 41-169 1-133 (157)
163 PRK08306 dipicolinate synthase 96.0 0.009 2E-07 55.7 4.9 90 39-135 152-244 (296)
164 PRK11150 rfaD ADP-L-glycero-D- 96.0 0.02 4.4E-07 52.4 7.2 90 42-135 2-118 (308)
165 COG0451 WcaG Nucleoside-diphos 96.0 0.032 7E-07 50.5 8.3 30 41-73 2-31 (314)
166 PRK05865 hypothetical protein; 96.0 0.019 4.2E-07 60.8 7.6 89 40-134 1-104 (854)
167 PRK09987 dTDP-4-dehydrorhamnos 96.0 0.014 3.1E-07 53.8 5.9 24 40-63 1-24 (299)
168 cd05212 NAD_bind_m-THF_DH_Cycl 96.0 0.029 6.2E-07 46.9 7.2 77 38-135 27-103 (140)
169 PLN00106 malate dehydrogenase 95.9 0.033 7.2E-07 52.8 8.3 74 37-111 16-96 (323)
170 PRK08293 3-hydroxybutyryl-CoA 95.9 0.018 3.9E-07 53.1 6.3 94 38-137 2-125 (287)
171 PRK08374 homoserine dehydrogen 95.9 0.016 3.5E-07 55.0 6.1 91 39-130 2-120 (336)
172 PRK09599 6-phosphogluconate de 95.9 0.013 2.9E-07 54.4 5.4 88 40-135 1-97 (301)
173 PRK08219 short chain dehydroge 95.9 0.029 6.4E-07 48.4 7.2 31 39-73 3-33 (227)
174 cd01483 E1_enzyme_family Super 95.9 0.048 1E-06 44.8 8.1 91 41-134 1-123 (143)
175 TIGR01505 tartro_sem_red 2-hyd 95.8 0.0055 1.2E-07 56.4 2.5 87 41-134 1-95 (291)
176 PRK06813 homoserine dehydrogen 95.8 0.024 5.1E-07 54.3 6.8 90 39-129 2-119 (346)
177 PRK05442 malate dehydrogenase; 95.8 0.027 5.8E-07 53.4 7.1 74 38-111 3-90 (326)
178 TIGR01181 dTDP_gluc_dehyt dTDP 95.8 0.044 9.6E-07 49.6 8.3 31 41-72 1-31 (317)
179 PRK05808 3-hydroxybutyryl-CoA 95.8 0.027 5.9E-07 51.6 6.9 95 38-138 2-124 (282)
180 PRK12490 6-phosphogluconate de 95.8 0.015 3.3E-07 54.0 5.2 88 40-135 1-97 (299)
181 TIGR02197 heptose_epim ADP-L-g 95.7 0.035 7.6E-07 50.6 7.4 23 42-64 1-23 (314)
182 PRK14175 bifunctional 5,10-met 95.7 0.031 6.8E-07 52.1 7.1 94 38-155 157-250 (286)
183 PRK15059 tartronate semialdehy 95.7 0.014 2.9E-07 54.3 4.7 88 40-135 1-96 (292)
184 cd00704 MDH Malate dehydrogena 95.7 0.026 5.6E-07 53.4 6.5 72 40-111 1-86 (323)
185 PLN02602 lactate dehydrogenase 95.7 0.03 6.4E-07 53.7 6.8 85 24-111 22-115 (350)
186 PRK14179 bifunctional 5,10-met 95.6 0.045 9.7E-07 51.0 7.6 92 39-155 158-250 (284)
187 PLN02662 cinnamyl-alcohol dehy 95.6 0.022 4.8E-07 52.2 5.5 26 39-64 4-29 (322)
188 PRK06522 2-dehydropantoate 2-r 95.6 0.043 9.3E-07 50.2 7.3 92 40-135 1-103 (304)
189 TIGR01470 cysG_Nterm siroheme 95.5 0.031 6.7E-07 49.5 6.1 84 39-128 9-97 (205)
190 PRK06249 2-dehydropantoate 2-r 95.5 0.12 2.7E-06 48.1 10.3 91 37-132 3-106 (313)
191 PRK07201 short chain dehydroge 95.5 0.048 1E-06 55.4 8.1 33 40-73 1-33 (657)
192 PRK06718 precorrin-2 dehydroge 95.5 0.062 1.3E-06 47.4 7.8 84 39-128 10-97 (202)
193 TIGR00715 precor6x_red precorr 95.5 0.054 1.2E-06 49.7 7.6 87 40-131 1-98 (256)
194 COG0039 Mdh Malate/lactate deh 95.4 0.045 9.7E-07 51.7 7.1 68 40-110 1-78 (313)
195 PRK06196 oxidoreductase; Provi 95.4 0.067 1.5E-06 49.5 8.1 31 39-72 26-56 (315)
196 TIGR01772 MDH_euk_gproteo mala 95.4 0.041 8.9E-07 51.9 6.7 70 41-111 1-77 (312)
197 COG0240 GpsA Glycerol-3-phosph 95.4 0.028 6.1E-07 53.3 5.5 93 39-136 1-109 (329)
198 PRK06182 short chain dehydroge 95.4 0.08 1.7E-06 47.6 8.4 32 38-72 2-33 (273)
199 PF01073 3Beta_HSD: 3-beta hyd 95.4 0.035 7.6E-07 51.2 6.0 66 44-110 2-75 (280)
200 TIGR01019 sucCoAalpha succinyl 95.4 0.074 1.6E-06 49.6 8.2 90 39-136 6-99 (286)
201 PTZ00345 glycerol-3-phosphate 95.3 0.09 2E-06 50.7 9.0 99 38-139 10-136 (365)
202 COG1091 RfbD dTDP-4-dehydrorha 95.3 0.023 5E-07 52.8 4.7 83 40-138 1-105 (281)
203 PF02882 THF_DHG_CYH_C: Tetrah 95.3 0.09 1.9E-06 45.0 8.0 119 38-185 35-155 (160)
204 PRK00066 ldh L-lactate dehydro 95.3 0.046 9.9E-07 51.5 6.5 70 39-111 6-83 (315)
205 PLN02260 probable rhamnose bio 95.2 0.094 2E-06 53.9 9.2 34 39-73 6-39 (668)
206 cd00757 ThiF_MoeB_HesA_family 95.2 0.066 1.4E-06 47.9 7.1 91 39-132 21-143 (228)
207 PLN00203 glutamyl-tRNA reducta 95.2 0.044 9.6E-07 55.1 6.6 96 39-139 266-376 (519)
208 PLN02696 1-deoxy-D-xylulose-5- 95.2 0.058 1.3E-06 53.2 7.2 89 39-129 57-177 (454)
209 PRK10217 dTDP-glucose 4,6-dehy 95.2 0.064 1.4E-06 50.1 7.3 26 39-64 1-26 (355)
210 COG3804 Uncharacterized conser 95.2 0.058 1.3E-06 50.2 6.7 87 40-131 3-97 (350)
211 PLN02778 3,5-epimerase/4-reduc 95.2 0.022 4.9E-07 52.7 4.1 27 38-64 8-34 (298)
212 PRK00045 hemA glutamyl-tRNA re 95.2 0.028 6E-07 55.0 4.9 96 38-140 181-288 (423)
213 PRK07819 3-hydroxybutyryl-CoA 95.1 0.055 1.2E-06 50.1 6.6 95 39-138 5-127 (286)
214 PRK05690 molybdopterin biosynt 95.1 0.13 2.9E-06 46.6 9.0 91 39-132 32-154 (245)
215 TIGR01035 hemA glutamyl-tRNA r 95.1 0.038 8.2E-07 54.0 5.7 95 39-139 180-284 (417)
216 PLN02986 cinnamyl-alcohol dehy 95.1 0.063 1.4E-06 49.5 6.9 26 39-64 5-30 (322)
217 PRK14189 bifunctional 5,10-met 95.1 0.11 2.3E-06 48.6 8.3 93 39-155 158-250 (285)
218 COG1090 Predicted nucleoside-d 95.1 0.051 1.1E-06 50.5 6.1 69 42-116 1-71 (297)
219 PRK14806 bifunctional cyclohex 95.1 0.043 9.4E-07 57.0 6.3 91 40-134 4-99 (735)
220 PRK13940 glutamyl-tRNA reducta 95.0 0.032 7E-07 54.6 5.0 97 39-140 181-281 (414)
221 PRK14192 bifunctional 5,10-met 95.0 0.073 1.6E-06 49.5 7.0 93 38-155 158-250 (283)
222 PLN02700 homoserine dehydrogen 95.0 0.08 1.7E-06 51.2 7.4 28 102-129 110-137 (377)
223 PRK12921 2-dehydropantoate 2-r 95.0 0.18 3.9E-06 46.3 9.5 91 40-134 1-104 (305)
224 PRK15181 Vi polysaccharide bio 95.0 0.028 6.1E-07 52.9 4.3 33 37-72 13-45 (348)
225 TIGR01757 Malate-DH_plant mala 95.0 0.038 8.2E-07 53.7 5.2 74 38-111 43-130 (387)
226 cd05293 LDH_1 A subgroup of L- 94.9 0.07 1.5E-06 50.2 6.6 70 39-111 3-81 (312)
227 PRK12826 3-ketoacyl-(acyl-carr 94.9 0.049 1.1E-06 47.7 5.3 32 39-73 6-37 (251)
228 PRK08618 ornithine cyclodeamin 94.8 0.057 1.2E-06 50.9 5.9 92 39-135 127-224 (325)
229 PF01370 Epimerase: NAD depend 94.8 0.032 6.9E-07 48.4 3.9 24 42-65 1-24 (236)
230 PRK12829 short chain dehydroge 94.8 0.037 8.1E-07 49.0 4.3 34 37-73 9-42 (264)
231 PF13241 NAD_binding_7: Putati 94.6 0.12 2.5E-06 40.5 6.4 80 39-129 7-89 (103)
232 PRK13394 3-hydroxybutyrate deh 94.6 0.063 1.4E-06 47.5 5.3 27 38-64 6-32 (262)
233 PRK06141 ornithine cyclodeamin 94.6 0.071 1.5E-06 50.0 5.9 89 39-135 125-221 (314)
234 TIGR02717 AcCoA-syn-alpha acet 94.5 0.16 3.5E-06 50.1 8.5 89 39-136 7-100 (447)
235 COG3268 Uncharacterized conser 94.5 0.032 7E-07 53.0 3.3 91 39-134 6-106 (382)
236 PRK00258 aroE shikimate 5-dehy 94.5 0.067 1.5E-06 49.2 5.4 89 39-132 123-221 (278)
237 cd05291 HicDH_like L-2-hydroxy 94.5 0.079 1.7E-06 49.4 6.0 69 41-111 2-78 (306)
238 KOG2711 Glycerol-3-phosphate d 94.5 0.15 3.3E-06 48.6 7.7 104 38-142 20-149 (372)
239 cd05292 LDH_2 A subgroup of L- 94.5 0.1 2.2E-06 48.9 6.6 71 40-112 1-78 (308)
240 PF00899 ThiF: ThiF family; I 94.4 0.092 2E-06 42.8 5.6 91 39-132 2-124 (135)
241 PRK09009 C factor cell-cell si 94.4 0.21 4.5E-06 43.6 8.1 31 40-71 1-31 (235)
242 PF02670 DXP_reductoisom: 1-de 94.4 0.097 2.1E-06 43.2 5.6 36 42-78 1-36 (129)
243 cd01492 Aos1_SUMO Ubiquitin ac 94.4 0.15 3.4E-06 44.7 7.2 90 39-131 21-141 (197)
244 PRK15182 Vi polysaccharide bio 94.4 0.077 1.7E-06 52.0 5.8 91 39-135 6-123 (425)
245 PRK08605 D-lactate dehydrogena 94.3 0.072 1.6E-06 50.5 5.3 87 39-134 146-238 (332)
246 COG2084 MmsB 3-hydroxyisobutyr 94.3 0.049 1.1E-06 50.8 4.0 88 40-135 1-98 (286)
247 PRK05993 short chain dehydroge 94.2 0.24 5.1E-06 44.8 8.4 30 40-72 5-34 (277)
248 PRK15057 UDP-glucose 6-dehydro 94.2 0.11 2.3E-06 50.4 6.4 91 40-135 1-120 (388)
249 TIGR01758 MDH_euk_cyt malate d 94.2 0.11 2.3E-06 49.3 6.2 71 41-111 1-85 (324)
250 PRK05479 ketol-acid reductoiso 94.2 0.45 9.7E-06 45.3 10.3 91 39-137 17-112 (330)
251 PRK09260 3-hydroxybutyryl-CoA 94.2 0.087 1.9E-06 48.5 5.4 92 40-137 2-122 (288)
252 PTZ00117 malate dehydrogenase; 94.1 0.11 2.3E-06 49.1 6.0 71 38-111 4-83 (319)
253 TIGR00507 aroE shikimate 5-deh 94.1 0.1 2.2E-06 47.7 5.8 90 39-133 117-215 (270)
254 PRK14173 bifunctional 5,10-met 94.1 0.44 9.4E-06 44.6 9.9 106 39-171 155-261 (287)
255 PRK14106 murD UDP-N-acetylmura 94.1 0.18 3.9E-06 49.1 7.8 108 38-150 4-118 (450)
256 KOG1203 Predicted dehydrogenas 94.0 0.059 1.3E-06 52.6 4.1 30 36-65 76-105 (411)
257 PRK06035 3-hydroxyacyl-CoA deh 94.0 0.13 2.8E-06 47.5 6.2 93 39-137 3-126 (291)
258 PLN02572 UDP-sulfoquinovose sy 94.0 0.084 1.8E-06 51.8 5.2 58 11-72 14-77 (442)
259 PRK08267 short chain dehydroge 93.9 0.12 2.6E-06 45.9 5.7 30 40-72 2-31 (260)
260 PRK05557 fabG 3-ketoacyl-(acyl 93.9 0.16 3.4E-06 44.2 6.3 26 39-64 5-30 (248)
261 cd01485 E1-1_like Ubiquitin ac 93.9 0.26 5.5E-06 43.3 7.5 91 39-132 19-145 (198)
262 PRK12439 NAD(P)H-dependent gly 93.9 0.1 2.3E-06 49.4 5.4 93 36-135 4-114 (341)
263 TIGR03376 glycerol3P_DH glycer 93.8 0.32 6.9E-06 46.5 8.7 94 41-138 1-122 (342)
264 COG0373 HemA Glutamyl-tRNA red 93.8 0.12 2.5E-06 50.7 5.7 91 39-134 178-276 (414)
265 PLN00112 malate dehydrogenase 93.7 0.15 3.2E-06 50.5 6.3 75 37-111 98-186 (444)
266 PLN02545 3-hydroxybutyryl-CoA 93.7 0.18 3.9E-06 46.5 6.6 93 39-137 4-124 (295)
267 cd05290 LDH_3 A subgroup of L- 93.7 0.14 3E-06 48.1 5.9 69 41-111 1-78 (307)
268 PRK06463 fabG 3-ketoacyl-(acyl 93.7 0.14 3.1E-06 45.4 5.7 32 33-64 1-32 (255)
269 COG1004 Ugd Predicted UDP-gluc 93.7 0.073 1.6E-06 51.7 4.0 27 40-67 1-27 (414)
270 PRK07530 3-hydroxybutyryl-CoA 93.7 0.22 4.8E-06 45.9 7.1 94 38-137 3-124 (292)
271 PRK08264 short chain dehydroge 93.7 0.21 4.5E-06 43.6 6.6 26 39-64 6-31 (238)
272 PRK06130 3-hydroxybutyryl-CoA 93.7 0.21 4.5E-06 46.4 6.9 90 40-135 5-118 (311)
273 PF02826 2-Hacid_dh_C: D-isome 93.7 0.035 7.6E-07 47.7 1.6 87 39-132 36-127 (178)
274 cd01484 E1-2_like Ubiquitin ac 93.6 0.25 5.5E-06 44.7 7.2 106 41-148 1-138 (234)
275 TIGR02371 ala_DH_arch alanine 93.6 0.14 3.1E-06 48.3 5.8 106 38-154 127-237 (325)
276 PRK12939 short chain dehydroge 93.6 0.16 3.6E-06 44.4 5.9 32 38-72 6-37 (250)
277 PRK14169 bifunctional 5,10-met 93.6 0.49 1.1E-05 44.1 9.1 92 39-154 156-247 (282)
278 PRK06129 3-hydroxyacyl-CoA deh 93.5 1 2.2E-05 41.9 11.4 24 40-64 3-26 (308)
279 PLN02240 UDP-glucose 4-epimera 93.5 0.093 2E-06 48.8 4.4 31 39-72 5-35 (352)
280 cd05191 NAD_bind_amino_acid_DH 93.5 0.58 1.3E-05 35.2 8.0 63 39-132 23-86 (86)
281 PRK06179 short chain dehydroge 93.5 0.33 7.2E-06 43.3 7.8 31 39-72 4-34 (270)
282 TIGR02356 adenyl_thiF thiazole 93.4 0.36 7.7E-06 42.4 7.7 91 39-132 21-143 (202)
283 PRK07666 fabG 3-ketoacyl-(acyl 93.4 0.15 3.4E-06 44.5 5.4 31 39-72 7-37 (239)
284 TIGR01179 galE UDP-glucose-4-e 93.3 0.15 3.3E-06 46.2 5.4 24 41-64 1-24 (328)
285 PRK07531 bifunctional 3-hydrox 93.2 0.57 1.2E-05 46.8 9.7 91 40-136 5-120 (495)
286 PLN00198 anthocyanidin reducta 93.2 0.12 2.5E-06 48.2 4.5 27 38-64 8-34 (338)
287 KOG1430 C-3 sterol dehydrogena 93.2 0.22 4.8E-06 47.9 6.4 34 38-72 3-36 (361)
288 COG0771 MurD UDP-N-acetylmuram 93.2 0.26 5.7E-06 48.7 7.1 108 39-150 7-120 (448)
289 PLN02650 dihydroflavonol-4-red 93.1 0.12 2.7E-06 48.3 4.6 31 39-72 5-35 (351)
290 PLN02350 phosphogluconate dehy 93.0 0.11 2.3E-06 52.1 4.2 153 39-206 6-186 (493)
291 PRK06046 alanine dehydrogenase 93.0 0.17 3.6E-06 47.8 5.3 91 38-134 128-225 (326)
292 cd01487 E1_ThiF_like E1_ThiF_l 93.0 0.74 1.6E-05 39.5 8.8 88 41-131 1-120 (174)
293 PRK10675 UDP-galactose-4-epime 92.9 0.1 2.2E-06 48.3 3.6 30 40-72 1-30 (338)
294 PRK15469 ghrA bifunctional gly 92.9 0.32 7E-06 45.8 7.0 85 39-133 136-227 (312)
295 PRK00683 murD UDP-N-acetylmura 92.9 0.31 6.7E-06 47.3 7.1 86 37-130 1-88 (418)
296 PRK14181 bifunctional 5,10-met 92.8 0.64 1.4E-05 43.5 8.7 97 39-154 153-253 (287)
297 TIGR00243 Dxr 1-deoxy-D-xylulo 92.8 0.17 3.6E-06 49.1 5.0 37 40-78 2-39 (389)
298 TIGR03206 benzo_BadH 2-hydroxy 92.8 0.24 5.3E-06 43.3 5.7 31 39-72 3-33 (250)
299 TIGR02355 moeB molybdopterin s 92.8 0.6 1.3E-05 42.3 8.4 91 39-132 24-146 (240)
300 PRK05562 precorrin-2 dehydroge 92.7 0.62 1.3E-05 42.0 8.2 97 23-129 13-114 (223)
301 PRK06523 short chain dehydroge 92.7 0.18 3.8E-06 44.8 4.7 32 38-72 8-39 (260)
302 PRK10084 dTDP-glucose 4,6 dehy 92.6 0.12 2.6E-06 48.2 3.7 25 40-64 1-25 (352)
303 PLN02896 cinnamyl-alcohol dehy 92.6 0.16 3.5E-06 47.7 4.5 31 39-72 10-40 (353)
304 PLN02583 cinnamoyl-CoA reducta 92.6 0.18 4E-06 46.3 4.9 32 39-73 6-37 (297)
305 PTZ00082 L-lactate dehydrogena 92.5 0.29 6.2E-06 46.3 6.2 69 40-111 7-84 (321)
306 PRK14193 bifunctional 5,10-met 92.5 0.65 1.4E-05 43.3 8.4 105 39-171 158-262 (284)
307 PTZ00142 6-phosphogluconate de 92.5 0.14 3.1E-06 50.9 4.3 91 40-135 2-104 (470)
308 PRK14190 bifunctional 5,10-met 92.5 0.31 6.7E-06 45.5 6.2 94 38-155 157-250 (284)
309 COG4091 Predicted homoserine d 92.5 0.45 9.7E-06 45.8 7.2 90 37-129 15-130 (438)
310 PRK14168 bifunctional 5,10-met 92.4 0.69 1.5E-05 43.4 8.5 100 38-155 160-263 (297)
311 PRK13243 glyoxylate reductase; 92.4 0.21 4.6E-06 47.3 5.2 87 39-133 150-241 (333)
312 PRK14191 bifunctional 5,10-met 92.4 0.63 1.4E-05 43.5 8.2 93 39-155 157-249 (285)
313 PRK06153 hypothetical protein; 92.4 0.67 1.5E-05 45.1 8.6 96 39-137 176-303 (393)
314 PRK14184 bifunctional 5,10-met 92.3 0.71 1.5E-05 43.2 8.3 95 39-155 157-252 (286)
315 PRK09242 tropinone reductase; 92.3 0.31 6.8E-06 43.1 5.8 30 40-72 10-39 (257)
316 PLN02858 fructose-bisphosphate 92.2 0.16 3.4E-06 56.8 4.5 95 31-134 317-420 (1378)
317 PLN02516 methylenetetrahydrofo 92.2 0.69 1.5E-05 43.5 8.1 96 39-155 167-265 (299)
318 PRK07574 formate dehydrogenase 92.2 0.35 7.7E-06 46.9 6.4 88 39-133 192-285 (385)
319 TIGR02992 ectoine_eutC ectoine 92.2 0.23 4.9E-06 46.9 5.0 92 39-135 129-227 (326)
320 PRK07856 short chain dehydroge 92.1 0.42 9E-06 42.3 6.4 31 39-72 6-36 (252)
321 KOG1431 GDP-L-fucose synthetas 92.1 0.23 5E-06 45.3 4.6 37 39-75 1-37 (315)
322 TIGR01763 MalateDH_bact malate 92.1 0.24 5.3E-06 46.4 5.0 69 40-111 2-79 (305)
323 PRK14182 bifunctional 5,10-met 92.0 0.71 1.5E-05 43.1 7.9 93 39-155 157-249 (282)
324 PLN02260 probable rhamnose bio 92.0 0.16 3.4E-06 52.2 4.0 30 36-65 377-406 (668)
325 PRK05653 fabG 3-ketoacyl-(acyl 92.0 0.19 4E-06 43.6 4.0 27 38-64 4-30 (246)
326 TIGR01692 HIBADH 3-hydroxyisob 92.0 0.11 2.3E-06 48.0 2.5 84 44-135 1-93 (288)
327 KOG1429 dTDP-glucose 4-6-dehyd 91.9 0.15 3.2E-06 47.8 3.2 30 39-68 27-56 (350)
328 PRK14186 bifunctional 5,10-met 91.9 0.38 8.2E-06 45.2 6.0 96 39-155 158-254 (297)
329 PRK14178 bifunctional 5,10-met 91.9 0.32 7E-06 45.2 5.5 92 39-155 152-243 (279)
330 cd01489 Uba2_SUMO Ubiquitin ac 91.8 0.63 1.4E-05 44.0 7.5 89 41-132 1-122 (312)
331 TIGR01746 Thioester-redct thio 91.8 0.24 5.2E-06 45.6 4.6 32 41-73 1-32 (367)
332 TIGR02622 CDP_4_6_dhtase CDP-g 91.8 0.23 4.9E-06 46.5 4.5 31 39-72 4-34 (349)
333 TIGR01472 gmd GDP-mannose 4,6- 91.8 0.19 4.1E-06 46.9 3.9 31 40-73 1-31 (343)
334 KOG4777 Aspartate-semialdehyde 91.7 0.12 2.6E-06 47.6 2.5 40 219-266 182-221 (361)
335 PRK07066 3-hydroxybutyryl-CoA 91.7 0.65 1.4E-05 44.0 7.5 93 39-137 7-124 (321)
336 PRK01710 murD UDP-N-acetylmura 91.7 0.76 1.6E-05 45.2 8.3 106 40-150 15-127 (458)
337 PRK08328 hypothetical protein; 91.7 0.45 9.8E-06 42.7 6.2 91 39-132 27-150 (231)
338 KOG2741 Dimeric dihydrodiol de 91.7 0.25 5.4E-06 47.2 4.6 87 38-129 5-100 (351)
339 TIGR03736 PRTRC_ThiF PRTRC sys 91.7 1.1 2.4E-05 40.9 8.7 94 39-133 11-142 (244)
340 PRK14180 bifunctional 5,10-met 91.7 0.52 1.1E-05 43.9 6.6 92 39-155 158-249 (282)
341 PLN03139 formate dehydrogenase 91.7 0.39 8.5E-06 46.7 6.1 87 39-132 199-291 (386)
342 PRK12480 D-lactate dehydrogena 91.6 0.54 1.2E-05 44.6 6.9 84 39-133 146-235 (330)
343 TIGR00873 gnd 6-phosphoglucona 91.6 0.35 7.6E-06 48.1 5.8 155 41-207 1-178 (467)
344 PRK12828 short chain dehydroge 91.6 0.23 4.9E-06 43.0 4.0 31 39-72 7-37 (239)
345 PRK12935 acetoacetyl-CoA reduc 91.6 0.66 1.4E-05 40.7 7.0 26 39-64 6-31 (247)
346 PRK08220 2,3-dihydroxybenzoate 91.5 1 2.2E-05 39.5 8.2 32 38-72 7-38 (252)
347 PRK14166 bifunctional 5,10-met 91.5 0.45 9.7E-06 44.4 6.1 94 38-155 156-249 (282)
348 PLN02858 fructose-bisphosphate 91.5 0.23 4.9E-06 55.6 4.8 87 39-134 4-100 (1378)
349 KOG1494 NAD-dependent malate d 91.5 0.32 6.8E-06 45.5 4.9 72 37-110 26-105 (345)
350 PLN02686 cinnamoyl-CoA reducta 91.4 0.25 5.4E-06 47.1 4.4 28 37-64 51-78 (367)
351 PRK06138 short chain dehydroge 91.4 0.33 7.2E-06 42.5 5.0 31 39-72 5-35 (252)
352 PRK05693 short chain dehydroge 91.4 0.41 9E-06 42.9 5.6 30 40-72 2-31 (274)
353 cd01488 Uba3_RUB Ubiquitin act 91.3 0.53 1.2E-05 44.0 6.4 107 41-149 1-144 (291)
354 PLN02353 probable UDP-glucose 91.3 0.26 5.6E-06 49.1 4.5 32 39-72 1-32 (473)
355 PRK07578 short chain dehydroge 91.3 0.49 1.1E-05 40.3 5.7 23 40-62 1-23 (199)
356 PRK00676 hemA glutamyl-tRNA re 91.2 0.81 1.8E-05 43.7 7.6 85 39-135 174-264 (338)
357 PRK06171 sorbitol-6-phosphate 91.2 0.4 8.7E-06 42.7 5.3 26 39-64 9-34 (266)
358 PRK06436 glycerate dehydrogena 91.2 0.55 1.2E-05 44.1 6.3 84 39-133 122-210 (303)
359 PRK08309 short chain dehydroge 91.1 0.75 1.6E-05 39.7 6.7 83 40-127 1-101 (177)
360 PRK14174 bifunctional 5,10-met 91.1 0.45 9.8E-06 44.6 5.7 99 38-155 158-261 (295)
361 PRK07814 short chain dehydroge 91.1 0.35 7.6E-06 43.2 4.8 31 39-72 10-40 (263)
362 PRK14170 bifunctional 5,10-met 91.1 0.58 1.2E-05 43.7 6.3 92 39-154 157-248 (284)
363 PRK05875 short chain dehydroge 91.1 0.46 1E-05 42.5 5.6 33 37-72 5-37 (276)
364 KOG2733 Uncharacterized membra 91.0 0.46 9.9E-06 45.8 5.6 94 39-134 5-118 (423)
365 PRK01438 murD UDP-N-acetylmura 91.0 0.84 1.8E-05 44.9 7.8 86 39-129 16-106 (480)
366 PRK06550 fabG 3-ketoacyl-(acyl 91.0 0.38 8.3E-06 41.8 4.9 26 39-64 5-30 (235)
367 PLN02989 cinnamyl-alcohol dehy 91.0 0.32 6.9E-06 44.8 4.6 26 39-64 5-30 (325)
368 PRK09310 aroDE bifunctional 3- 91.0 0.46 9.9E-06 47.3 5.9 84 39-133 332-417 (477)
369 PRK14187 bifunctional 5,10-met 91.0 1.3 2.9E-05 41.5 8.6 95 39-155 160-255 (294)
370 PRK09436 thrA bifunctional asp 91.0 0.36 7.7E-06 51.3 5.4 90 38-130 464-576 (819)
371 PRK10792 bifunctional 5,10-met 91.0 0.64 1.4E-05 43.4 6.5 92 39-154 159-250 (285)
372 PRK14171 bifunctional 5,10-met 91.0 0.47 1E-05 44.4 5.6 92 39-154 159-250 (288)
373 COG1893 ApbA Ketopantoate redu 91.0 0.95 2.1E-05 42.5 7.7 79 40-122 1-88 (307)
374 PLN02653 GDP-mannose 4,6-dehyd 90.9 0.24 5.1E-06 46.1 3.7 32 39-73 6-37 (340)
375 PRK07904 short chain dehydroge 90.8 0.66 1.4E-05 41.5 6.3 34 38-73 7-40 (253)
376 TIGR01327 PGDH D-3-phosphoglyc 90.7 1.3 2.8E-05 44.7 8.9 204 39-274 138-351 (525)
377 PRK06398 aldose dehydrogenase; 90.7 0.65 1.4E-05 41.5 6.2 26 39-64 6-31 (258)
378 COG0569 TrkA K+ transport syst 90.7 0.87 1.9E-05 40.7 6.9 84 40-127 1-94 (225)
379 PRK12827 short chain dehydroge 90.7 0.31 6.6E-06 42.5 4.0 26 39-64 6-31 (249)
380 PRK05866 short chain dehydroge 90.6 0.38 8.3E-06 44.2 4.7 31 39-72 40-70 (293)
381 PRK14185 bifunctional 5,10-met 90.6 0.77 1.7E-05 43.0 6.7 98 39-155 157-259 (293)
382 PRK12475 thiamine/molybdopteri 90.5 0.64 1.4E-05 44.3 6.2 90 39-132 24-148 (338)
383 PRK14177 bifunctional 5,10-met 90.5 0.84 1.8E-05 42.6 6.8 78 38-136 158-235 (284)
384 cd01490 Ube1_repeat2 Ubiquitin 90.4 1.7 3.6E-05 43.0 9.1 106 41-148 1-145 (435)
385 PRK14176 bifunctional 5,10-met 90.3 0.81 1.7E-05 42.8 6.5 91 39-154 164-254 (287)
386 cd05211 NAD_bind_Glu_Leu_Phe_V 90.2 0.83 1.8E-05 40.8 6.3 33 38-74 22-54 (217)
387 PRK06823 ornithine cyclodeamin 90.2 0.85 1.8E-05 43.0 6.7 105 38-154 127-237 (315)
388 PRK07023 short chain dehydroge 90.2 0.36 7.8E-06 42.4 4.0 31 39-72 1-31 (243)
389 cd00650 LDH_MDH_like NAD-depen 90.2 0.73 1.6E-05 41.9 6.1 70 42-111 1-80 (263)
390 PRK09466 metL bifunctional asp 90.2 0.37 7.9E-06 51.2 4.6 92 37-129 456-569 (810)
391 PRK14172 bifunctional 5,10-met 90.2 0.72 1.6E-05 42.9 6.0 93 38-155 157-249 (278)
392 PRK14620 NAD(P)H-dependent gly 90.0 0.37 8E-06 45.0 4.1 90 40-135 1-109 (326)
393 PRK06181 short chain dehydroge 89.9 0.59 1.3E-05 41.5 5.2 31 40-73 2-32 (263)
394 PRK14031 glutamate dehydrogena 89.9 2 4.3E-05 42.6 9.2 87 38-130 227-340 (444)
395 PRK07326 short chain dehydroge 89.9 0.43 9.4E-06 41.5 4.2 31 39-72 6-36 (237)
396 PRK07060 short chain dehydroge 89.9 0.68 1.5E-05 40.4 5.5 32 38-72 8-39 (245)
397 PRK12549 shikimate 5-dehydroge 89.8 0.73 1.6E-05 42.7 5.8 69 40-113 128-204 (284)
398 PRK07454 short chain dehydroge 89.8 0.7 1.5E-05 40.4 5.5 31 39-72 6-36 (241)
399 PRK08265 short chain dehydroge 89.8 0.78 1.7E-05 41.0 5.9 26 39-64 6-31 (261)
400 PRK08063 enoyl-(acyl carrier p 89.8 0.38 8.3E-06 42.2 3.8 26 39-64 4-29 (250)
401 PRK14167 bifunctional 5,10-met 89.7 0.86 1.9E-05 42.8 6.2 99 38-155 156-258 (297)
402 PRK10538 malonic semialdehyde 89.6 0.62 1.3E-05 41.2 5.1 30 40-72 1-30 (248)
403 PRK07340 ornithine cyclodeamin 89.6 0.51 1.1E-05 44.1 4.7 103 38-154 124-232 (304)
404 PRK12367 short chain dehydroge 89.6 1.3 2.8E-05 39.7 7.2 31 39-72 14-44 (245)
405 PRK06057 short chain dehydroge 89.5 0.45 9.7E-06 42.2 4.1 33 37-72 5-37 (255)
406 PRK08291 ectoine utilization p 89.5 0.58 1.3E-05 44.2 5.0 92 39-135 132-230 (330)
407 PRK14183 bifunctional 5,10-met 89.5 1.7 3.7E-05 40.5 8.0 94 38-155 156-249 (281)
408 TIGR00518 alaDH alanine dehydr 89.5 0.69 1.5E-05 44.5 5.6 90 39-134 167-269 (370)
409 PLN02897 tetrahydrofolate dehy 89.4 0.81 1.8E-05 43.8 5.9 94 39-154 214-311 (345)
410 PRK06172 short chain dehydroge 89.4 0.78 1.7E-05 40.4 5.5 32 38-72 6-37 (253)
411 PRK05708 2-dehydropantoate 2-r 89.4 3.7 7.9E-05 38.2 10.2 78 40-121 3-90 (305)
412 PRK08268 3-hydroxy-acyl-CoA de 89.4 1.1 2.4E-05 44.9 7.2 94 39-137 7-127 (507)
413 PRK12936 3-ketoacyl-(acyl-carr 89.4 0.8 1.7E-05 39.8 5.5 26 39-64 6-31 (245)
414 PRK06953 short chain dehydroge 89.4 0.42 9.1E-06 41.5 3.7 30 40-72 2-31 (222)
415 PRK08644 thiamine biosynthesis 89.3 3.5 7.6E-05 36.5 9.6 92 39-133 28-151 (212)
416 PRK07424 bifunctional sterol d 89.3 0.34 7.3E-06 47.4 3.3 33 38-73 177-209 (406)
417 PRK06198 short chain dehydroge 89.3 0.76 1.7E-05 40.6 5.4 26 39-64 6-31 (260)
418 PRK07231 fabG 3-ketoacyl-(acyl 89.1 0.46 1E-05 41.5 3.8 31 39-72 5-35 (251)
419 PLN02996 fatty acyl-CoA reduct 89.1 0.72 1.6E-05 46.0 5.6 35 39-73 11-45 (491)
420 PRK08762 molybdopterin biosynt 89.1 1.7 3.6E-05 41.9 7.9 91 39-132 135-257 (376)
421 PRK07877 hypothetical protein; 89.0 1.3 2.8E-05 46.4 7.6 92 39-133 107-229 (722)
422 PRK08628 short chain dehydroge 89.0 0.56 1.2E-05 41.5 4.3 28 37-64 5-32 (258)
423 cd01075 NAD_bind_Leu_Phe_Val_D 89.0 1.2 2.5E-05 39.2 6.2 87 37-133 26-116 (200)
424 PRK07806 short chain dehydroge 88.9 0.45 9.8E-06 41.7 3.6 31 39-72 6-36 (248)
425 cd01079 NAD_bind_m-THF_DH NAD 88.9 2.2 4.8E-05 37.8 7.8 91 38-134 61-158 (197)
426 PRK12429 3-hydroxybutyrate deh 88.8 0.61 1.3E-05 40.9 4.4 31 39-72 4-34 (258)
427 PRK15116 sulfur acceptor prote 88.7 4.8 0.0001 37.2 10.4 98 39-139 30-161 (268)
428 PRK07890 short chain dehydroge 88.7 0.78 1.7E-05 40.4 5.0 31 39-72 5-35 (258)
429 PLN02503 fatty acyl-CoA reduct 88.6 0.7 1.5E-05 47.5 5.2 35 39-74 119-154 (605)
430 PRK15438 erythronate-4-phospha 88.6 0.7 1.5E-05 44.8 4.9 83 39-132 116-207 (378)
431 PRK07688 thiamine/molybdopteri 88.5 1 2.2E-05 42.9 6.0 91 39-132 24-148 (339)
432 PRK06139 short chain dehydroge 88.4 1 2.2E-05 42.4 5.8 32 38-72 6-37 (330)
433 PLN02616 tetrahydrofolate dehy 88.4 1 2.2E-05 43.4 5.8 95 39-155 231-329 (364)
434 PRK08251 short chain dehydroge 88.3 0.81 1.8E-05 40.1 4.9 30 40-72 3-32 (248)
435 PLN02928 oxidoreductase family 88.3 0.86 1.9E-05 43.5 5.4 87 39-132 159-262 (347)
436 PRK06924 short chain dehydroge 88.3 0.91 2E-05 39.9 5.2 30 40-72 2-31 (251)
437 PRK06914 short chain dehydroge 88.3 0.57 1.2E-05 42.0 3.9 31 39-72 3-33 (280)
438 TIGR01963 PHB_DH 3-hydroxybuty 88.2 0.81 1.8E-05 40.0 4.8 31 40-73 2-32 (255)
439 PRK12746 short chain dehydroge 88.2 0.87 1.9E-05 40.1 5.0 26 39-64 6-31 (254)
440 PRK09135 pteridine reductase; 88.2 0.92 2E-05 39.5 5.1 32 39-73 6-37 (249)
441 COG0300 DltE Short-chain dehyd 88.2 0.73 1.6E-05 42.6 4.6 36 37-75 4-39 (265)
442 cd05313 NAD_bind_2_Glu_DH NAD( 88.2 3 6.4E-05 38.4 8.5 89 38-130 37-151 (254)
443 PRK13581 D-3-phosphoglycerate 88.2 0.79 1.7E-05 46.2 5.2 87 39-133 140-231 (526)
444 PF07993 NAD_binding_4: Male s 88.1 0.61 1.3E-05 41.7 4.0 30 44-74 1-30 (249)
445 PF03721 UDPG_MGDP_dh_N: UDP-g 88.1 0.33 7.2E-06 42.2 2.2 25 40-65 1-25 (185)
446 KOG0409 Predicted dehydrogenas 88.1 0.76 1.6E-05 43.3 4.6 151 38-207 34-205 (327)
447 PRK00141 murD UDP-N-acetylmura 88.1 1.7 3.7E-05 43.0 7.5 87 39-130 15-103 (473)
448 PRK07577 short chain dehydroge 88.1 0.67 1.4E-05 40.2 4.1 31 39-72 3-33 (234)
449 PRK06407 ornithine cyclodeamin 88.1 1.2 2.6E-05 41.6 6.1 92 38-134 116-214 (301)
450 cd01339 LDH-like_MDH L-lactate 88.1 0.87 1.9E-05 42.2 5.1 67 42-111 1-76 (300)
451 PRK06180 short chain dehydroge 88.0 0.73 1.6E-05 41.6 4.4 31 39-72 4-34 (277)
452 PRK06125 short chain dehydroge 88.0 1.3 2.7E-05 39.4 5.9 31 39-72 7-37 (259)
453 KOG2742 Predicted oxidoreducta 87.9 0.23 4.9E-06 47.4 1.1 88 42-133 5-96 (367)
454 TIGR01724 hmd_rel H2-forming N 87.9 0.74 1.6E-05 43.8 4.5 80 50-134 30-118 (341)
455 PRK06199 ornithine cyclodeamin 87.8 0.9 2E-05 44.0 5.2 90 38-129 154-256 (379)
456 PRK12823 benD 1,6-dihydroxycyc 87.8 0.64 1.4E-05 41.1 3.9 28 37-64 6-33 (260)
457 PRK05565 fabG 3-ketoacyl-(acyl 87.7 0.75 1.6E-05 40.0 4.2 26 39-64 5-30 (247)
458 PRK05476 S-adenosyl-L-homocyst 87.7 1.1 2.3E-05 44.2 5.7 90 38-135 211-301 (425)
459 PRK09496 trkA potassium transp 87.6 1.4 3E-05 42.8 6.4 73 40-116 1-80 (453)
460 PRK09291 short chain dehydroge 87.6 0.82 1.8E-05 40.2 4.4 30 40-72 3-32 (257)
461 PLN00125 Succinyl-CoA ligase [ 87.6 4.9 0.00011 37.8 9.8 88 40-136 13-105 (300)
462 PRK08277 D-mannonate oxidoredu 87.5 1.2 2.5E-05 40.0 5.5 31 39-72 10-40 (278)
463 PRK06124 gluconate 5-dehydroge 87.5 1.1 2.5E-05 39.4 5.3 31 39-72 11-41 (256)
464 PRK07774 short chain dehydroge 87.5 0.69 1.5E-05 40.5 3.9 31 39-72 6-36 (250)
465 PRK14851 hypothetical protein; 87.5 5.4 0.00012 41.7 10.9 150 39-190 43-259 (679)
466 cd01486 Apg7 Apg7 is an E1-lik 87.3 1.9 4.2E-05 40.7 6.9 38 99-138 106-144 (307)
467 PRK03369 murD UDP-N-acetylmura 87.3 1.4 3E-05 43.8 6.3 85 40-129 13-98 (488)
468 COG3320 Putative dehydrogenase 87.3 0.89 1.9E-05 44.0 4.7 36 40-77 1-36 (382)
469 PRK09186 flagellin modificatio 87.3 0.71 1.5E-05 40.6 3.8 31 39-72 4-34 (256)
470 PRK08177 short chain dehydroge 87.2 1.2 2.6E-05 38.6 5.3 30 40-72 2-31 (225)
471 cd05295 MDH_like Malate dehydr 87.2 1 2.2E-05 44.7 5.2 73 39-111 123-209 (452)
472 PRK07589 ornithine cyclodeamin 87.2 1.3 2.8E-05 42.4 5.8 92 39-133 129-226 (346)
473 PRK12464 1-deoxy-D-xylulose 5- 87.2 1 2.2E-05 43.8 5.0 83 44-128 1-113 (383)
474 PRK06077 fabG 3-ketoacyl-(acyl 87.1 1.3 2.7E-05 38.8 5.3 26 39-64 6-31 (252)
475 PRK08017 oxidoreductase; Provi 87.1 1.2 2.7E-05 39.0 5.3 30 40-72 3-32 (256)
476 KOG1198 Zinc-binding oxidoredu 87.0 1.4 3E-05 42.3 5.8 93 39-134 158-259 (347)
477 TIGR01809 Shik-DH-AROM shikima 87.0 1.4 3E-05 40.7 5.8 72 39-114 125-203 (282)
478 PRK06114 short chain dehydroge 86.9 2.8 6.1E-05 37.0 7.6 31 39-72 8-38 (254)
479 PRK06500 short chain dehydroge 86.9 0.82 1.8E-05 39.9 4.0 31 39-72 6-36 (249)
480 PTZ00187 succinyl-CoA syntheta 86.8 4.5 9.7E-05 38.4 9.1 92 40-136 30-124 (317)
481 TIGR02825 B4_12hDH leukotriene 86.8 1.4 3.1E-05 40.5 5.8 90 39-132 139-237 (325)
482 PRK07102 short chain dehydroge 86.8 0.73 1.6E-05 40.4 3.7 30 40-72 2-31 (243)
483 PRK09414 glutamate dehydrogena 86.7 4.2 9.2E-05 40.3 9.2 88 37-130 230-341 (445)
484 PRK07523 gluconate 5-dehydroge 86.7 0.86 1.9E-05 40.3 4.1 31 39-72 10-40 (255)
485 cd01076 NAD_bind_1_Glu_DH NAD( 86.7 3.2 6.9E-05 37.3 7.8 33 38-74 30-62 (227)
486 PRK02472 murD UDP-N-acetylmura 86.7 2.9 6.2E-05 40.6 8.0 87 39-130 5-97 (447)
487 PRK12557 H(2)-dependent methyl 86.5 1.3 2.8E-05 42.3 5.4 78 50-133 30-117 (342)
488 PRK08703 short chain dehydroge 86.5 1.3 2.9E-05 38.6 5.1 31 39-72 6-36 (239)
489 cd05188 MDR Medium chain reduc 86.4 2.3 5.1E-05 37.0 6.7 92 39-134 135-234 (271)
490 PRK08936 glucose-1-dehydrogena 86.4 1.5 3.2E-05 39.0 5.4 27 37-63 5-31 (261)
491 PRK08223 hypothetical protein; 86.4 3.6 7.9E-05 38.5 8.1 96 39-138 27-156 (287)
492 PRK06194 hypothetical protein; 86.3 0.82 1.8E-05 41.1 3.8 31 39-72 6-36 (287)
493 PRK09880 L-idonate 5-dehydroge 86.3 3.1 6.6E-05 38.8 7.7 91 39-133 170-267 (343)
494 COG0743 Dxr 1-deoxy-D-xylulose 86.2 1.2 2.6E-05 42.9 5.0 37 39-76 1-37 (385)
495 PRK05597 molybdopterin biosynt 86.2 5 0.00011 38.4 9.3 90 39-131 28-149 (355)
496 PRK08324 short chain dehydroge 86.1 2 4.4E-05 44.5 7.0 31 39-72 422-452 (681)
497 PRK13403 ketol-acid reductoiso 86.1 2.1 4.6E-05 40.8 6.5 89 39-136 16-109 (335)
498 COG0190 FolD 5,10-methylene-te 86.1 3.1 6.6E-05 38.9 7.4 111 39-178 156-269 (283)
499 TIGR02354 thiF_fam2 thiamine b 86.1 6.7 0.00014 34.5 9.3 28 39-67 21-48 (200)
500 cd08293 PTGR2 Prostaglandin re 86.0 1.7 3.8E-05 40.1 5.9 90 40-132 156-254 (345)
No 1
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-65 Score=483.31 Aligned_cols=230 Identities=40% Similarity=0.672 Sum_probs=216.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcC-CCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~-~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.+||||+|||||+|++|+++|++| +||..++..++|++++|+.+.+.+.++.++++++++|.++|+||+|+|+++++++
T Consensus 5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~~~~~Divf~a~~~~~s~~~ 84 (347)
T PRK06728 5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINSFEGVDIAFFSAGGEVSRQF 84 (347)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHHhcCCCEEEECCChHHHHHH
Confidence 589999999999999999999965 4555558899999999999998877888888887778899999999999999999
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEe
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~ 197 (279)
++++.++|++|||+|++|||++++||++||||+++++. ..++||||||++++++++|+||+++++|++|+|+||
T Consensus 85 ~~~~~~~G~~VID~Ss~fR~~~~vplvvPEvN~e~i~~------~~~iIanPnC~tt~~~laL~PL~~~~~i~~v~V~t~ 158 (347)
T PRK06728 85 VNQAVSSGAIVIDNTSEYRMAHDVPLVVPEVNAHTLKE------HKGIIAVPNCSALQMVTALQPIRKVFGLERIIVSTY 158 (347)
T ss_pred HHHHHHCCCEEEECchhhcCCCCCCeEeCCcCHHHHhc------cCCEEECCCCHHHHHHHHHHHHHHcCCccEEEEEEe
Confidence 99999999999999999999999999999999999983 236999999999999999999999999999999999
Q ss_pred ecccccChhhHHHHHHHHHHHhcCCCCCccccc-------cccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCcc
Q 023678 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFS-------QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 198 q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~-------~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~ 270 (279)
||+||||+++++||++||+.+++|++.++++|| +||+||+|||||.|+++||++||+|+++|+||||+++++.
T Consensus 159 qavSGAG~~gv~eL~~qt~~~l~~~~~~~~~f~~~~~~~~~~iafNviP~i~~~~~~g~t~EE~K~~~E~~KIL~~~~l~ 238 (347)
T PRK06728 159 QAVSGSGIHAIQELKEQAKSILAGEEVESTILPAKKDKKHYPIAFNVLPQVDIFTDNDFTFEEVKMIQETKKILEDPNLK 238 (347)
T ss_pred ecccccchhhHHHHHHHHHHHhcCCCCccccccccccccCCceeccccCcCCccccCCccHHHHHHHHHHHHHhCCCCCc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999888
Q ss_pred EEee
Q 023678 271 FFVS 274 (279)
Q Consensus 271 v~~~ 274 (279)
|+.|
T Consensus 239 Vsat 242 (347)
T PRK06728 239 MAAT 242 (347)
T ss_pred EEEE
Confidence 8766
No 2
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=100.00 E-value=2.8e-63 Score=469.23 Aligned_cols=231 Identities=25% Similarity=0.331 Sum_probs=213.6
Q ss_pred CEEEEECcCcHHHHHHHHHHH-cCCCCceEEEEEeecCCCCceeeeCCceeEEeecCcc-CCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLS-DRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~-~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~-~~~~~DvVf~a~g~~~s~~~ 117 (279)
+||||+||||+||++++++|+ +++||..++++++|+++.|+.+.+.+....++++++. +|.++|+||||+|.++++++
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~~~~~v~~~~~~~~~~~vDivffa~g~~~s~~~ 80 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDIDALKALDIIITCQGGDYTNEI 80 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCCCcceEEcCcccccccCCCEEEEcCCHHHHHHH
Confidence 489999999999999999888 8889999999999999999999888777888888764 78999999999999999999
Q ss_pred HHHHHhCC--CEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcE--EECCCChHHHHHHhhhchhhhcCccEEE
Q 023678 118 GPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL--IANPNCSTIICLMAATPLHRRAKVTRMV 193 (279)
Q Consensus 118 ~~~~~~aG--~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~i--VanPgC~tt~l~laL~PL~~~~~i~~v~ 193 (279)
+++++++| |.|||+|++|||++|+|+++||||++.+.... +.++ |+||||+|++|+++|+||++.++|++|+
T Consensus 81 ~p~~~~aG~~~~VIDnSSa~Rmd~dVPLVVPeVN~~~i~~~~----~~gi~~ianPNCst~~l~~aL~pL~~~~~i~~v~ 156 (366)
T TIGR01745 81 YPKLRESGWQGYWIDAASSLRMKDDAVIILDPVNQDVITDGL----NNGIRTFVGGNCTVSLMLMSLGGLFANDLVEWVS 156 (366)
T ss_pred HHHHHhCCCCeEEEECChhhhcCCCCCEEeCCcCHHHHHhHH----hCCcCeEECcCHHHHHHHHHHHHHHhccCccEEE
Confidence 99999999 88999999999999999999999999887410 2456 8999999999999999999999999999
Q ss_pred EEEeecccccChhhHHHHHHHHHHHhc--------CC-----------------CCCccccccccccccccCCCCcccCC
Q 023678 194 VSTYQAASGAGAAAMEELELQTREVLE--------GK-----------------PPTCKIFSQQYAFNLFSHNAPVLENG 248 (279)
Q Consensus 194 vtt~q~vSGaG~~~~~El~~qt~~l~~--------g~-----------------~~~~~~f~~~iafN~iP~i~~~~~~g 248 (279)
|+|||++||||+++++||++||+.+++ ++ +.++.+||+||+||+|||||.|+++|
T Consensus 157 VsTyQAvSGAG~~g~~eL~~Qt~~l~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~fp~~iafNvIP~Ig~~~~~g 236 (366)
T TIGR01745 157 VATYQAASGGGARHMRELLTQMGHLYGHVEDELATPSSAILDIERKVTKLTRSGELPVDNFGVPLAGSLIPWIDKQLDNG 236 (366)
T ss_pred EEechhhhhcCHHHHHHHHHHHHHHhccccccccccchhhhhhccccccccccCCCCcccCCCcccccccCcCCCccCCC
Confidence 999999999999999999999999877 44 67788999999999999999999999
Q ss_pred ChHHHHhHHHHHHHhcCC-CCccEEee
Q 023678 249 YNEEEMKMVKETRKIWVS-FKMNFFVS 274 (279)
Q Consensus 249 ~t~eE~k~~~E~~kil~~-~~~~v~~~ 274 (279)
||+||+|+++|+|||||+ +++.|+.|
T Consensus 237 ~t~EE~K~~~EtrKILg~~~~l~VsaT 263 (366)
T TIGR01745 237 QSREEWKGQAETNKILGTSSTIPVDGL 263 (366)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCcEEEE
Confidence 999999999999999998 88887666
No 3
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=3.2e-63 Score=470.05 Aligned_cols=234 Identities=26% Similarity=0.314 Sum_probs=207.6
Q ss_pred CCEEEEECcCcHHHHHHHH-HHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~-lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|++|||+|||||||++|++ +|++++||..+++.++++++.|+...+.+....+.+.. +++|.++|+||||+|++++++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~~s~~ 80 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGDYTNE 80 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHHHHHH
Confidence 3799999999999999998 66666777777999877777777667777666666644 567889999999999999999
Q ss_pred hHHHHHhCC--CEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEE
Q 023678 117 FGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (279)
Q Consensus 117 ~~~~~~~aG--~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~v 194 (279)
++++++++| |.|||+|++|||++++||++||||+++++.... .+.++||||||++++++++|+||++.++|++|+|
T Consensus 81 ~~~~~~~aG~~~~VID~Ss~fR~~~dvplvvPEvN~e~i~~~~~--~g~~iIanPnC~tt~~~laL~PL~~~~~i~~viV 158 (369)
T PRK06598 81 VYPKLRAAGWQGYWIDAASTLRMKDDAIIILDPVNRDVIDDALA--NGVKTFVGGNCTVSLMLMALGGLFKNDLVEWVSV 158 (369)
T ss_pred HHHHHHhCCCCeEEEECChHHhCCCCCcEEcCCcCHHHHHhhhh--cCCCEEEcCChHHHHHHHHHHHHHhcCCceEEEE
Confidence 999999999 679999999999999999999999999974100 0125899999999999999999999999999999
Q ss_pred EEeecccccChhhHHHHHHHHHHHhc-------------------------CCCCCccccccccccccccCCCCcccCCC
Q 023678 195 STYQAASGAGAAAMEELELQTREVLE-------------------------GKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 195 tt~q~vSGaG~~~~~El~~qt~~l~~-------------------------g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+||||+||||+++++||++||+.+++ |++.++++||+||+||+|||||.|+++||
T Consensus 159 st~qavSGAG~~g~~eL~~qt~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~iafN~iP~I~~~~~~g~ 238 (369)
T PRK06598 159 MTYQAASGAGARNMRELLTQMGALHGAVADELADPASAILDIDRKVTELMRSGDLPTDNFGVPLAGSLIPWIDKDLGNGQ 238 (369)
T ss_pred EeeecccccCHHHHHHHHHHHHHHhhhccccccccchhhhhhhhhhhhhcccCCCCcccCCCcccccccCcCCCcccCCc
Confidence 99999999999999999999999866 78889999999999999999999999999
Q ss_pred hHHHHhHHHHHHHhcCC--CCccEEee
Q 023678 250 NEEEMKMVKETRKIWVS--FKMNFFVS 274 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~--~~~~v~~~ 274 (279)
|+||+|+++|+|||||. +++.|+.|
T Consensus 239 t~EE~K~~~EtrKIL~~~~~~l~vs~t 265 (369)
T PRK06598 239 SREEWKGQAETNKILGLTKNPIPVDGL 265 (369)
T ss_pred hHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 99999999999999997 77887666
No 4
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-62 Score=456.80 Aligned_cols=231 Identities=49% Similarity=0.718 Sum_probs=212.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eeeCCceeEEee--cCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEE--LTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~~~~~~~v~~--~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
++||||+||||.||++++++|++++||..++.+++|.|++|+. ..|.+..+.+.+ .+..+|+++|+||||+|.++++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~~s~ 80 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGSVSK 80 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchHHHH
Confidence 4799999999999999999999987777778899999999998 777776666666 5566788999999999999999
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCC-cEEECCCChHHHHHHhhhchhhhcCccEEEE
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRMVV 194 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~-~iVanPgC~tt~l~laL~PL~~~~~i~~v~v 194 (279)
+++++++++||.|||+||+|||++|+|++|||||++++.... +. +||+||||+|++|+++|+||+++++|++|+|
T Consensus 81 ~~~p~~~~~G~~VIdnsSa~Rm~~DVPLVVPeVN~~~l~~~~----~rg~IianpNCst~~l~~aL~PL~~~~~i~~v~V 156 (334)
T COG0136 81 EVEPKAAEAGCVVIDNSSAFRMDPDVPLVVPEVNPEHLIDYQ----KRGFIIANPNCSTIQLVLALKPLHDAFGIKRVVV 156 (334)
T ss_pred HHHHHHHHcCCEEEeCCcccccCCCCCEecCCcCHHHHHhhh----hCCCEEECCChHHHHHHHHHHHHHhhcCceEEEE
Confidence 999999999999999999999999999999999999987542 23 4999999999999999999999999999999
Q ss_pred EEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 195 STYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 195 tt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+|||++||||++++.||..|+..++++.++.+. ++|||||+||||+++++||||+||+|+.+|++||||++++.|+.|
T Consensus 157 sTyQAvSGAG~~~~~el~~q~~~~~~~~~i~~~--~~~iAfNviP~I~~~~~ng~t~EE~K~~~Et~KIlg~~~~~Vsat 234 (334)
T COG0136 157 STYQAVSGAGAEGGVELAGQTDALLNGIPILPI--GYPLAFNVIPHIDGFLDNGYTKEEWKIEAETRKILGDPDIKVSAT 234 (334)
T ss_pred EEeehhhhcCccchhhHHHHHhhhccCcccccc--cccccccccccCCccccCCccHHHHHHHHHHHHHhCCCCCceEEE
Confidence 999999999999999999999999888887776 789999999999999999999999999999999999988888877
Q ss_pred ec
Q 023678 275 PC 276 (279)
Q Consensus 275 ~~ 276 (279)
|
T Consensus 235 -c 235 (334)
T COG0136 235 -C 235 (334)
T ss_pred -E
Confidence 5
No 5
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=2.6e-61 Score=453.59 Aligned_cols=231 Identities=34% Similarity=0.514 Sum_probs=217.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+++||||+|||||+|++|+++|++|+||.+++..++|++++|+++.+.+.++.+++++..+|.++|+||+|+|+++++++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~~s~~~ 82 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGREASAAY 82 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHHHHHHH
Confidence 45899999999999999999999988899999999999999999998777788887766677899999999999999999
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEe
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~ 197 (279)
++++.++|++|||+|++||+++++||++||||++.++.++ +.++|||||||+|+++++|+||++.++|++|+|+||
T Consensus 83 ~~~~~~~g~~VIDlS~~fRl~~~vP~~lPEvn~~~l~~i~----~~~iIAnPgC~~t~~~laL~PL~~~~~i~~viV~t~ 158 (336)
T PRK08040 83 AEEATNAGCLVIDSSGLFALEPDVPLVVPEVNPFVLADYR----NRNIIAVADSLTSQLLTAIKPLIDQAGLSRLHVTNL 158 (336)
T ss_pred HHHHHHCCCEEEECChHhcCCCCCceEccccCHHHHhhhc----cCCEEECCCHHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence 9999999999999999999999999999999997776543 578999999999999999999999999999999999
Q ss_pred ecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 198 q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
||+|||||++++||++||+.+++|++++++.|+.|++||++||||+ ++|++.||+|+..|++|+|+.+++.|+.|
T Consensus 159 qgvSGAG~~~~~~L~~qt~~~~~~~~~~~~~f~~~i~~N~~pyi~~--~~g~~~~erh~~~Ei~kiL~~~~~~vs~t 233 (336)
T PRK08040 159 LSASAHGKAAVDALAGQSAKLLNGIPIEEGFFGRQLAFNMLPLLPD--SEGSVREERRLVDQVRKILQDEGLPISVS 233 (336)
T ss_pred ccccccChhhHHHHHHHHHHhhcCCCcccccCchhhcCceeeccCC--cCCcchHhhhhHHHHHHHhCCCCCeEEEE
Confidence 9999999999999999999999999999999999999999999998 99999999999999999998777887777
No 6
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=100.00 E-value=1.4e-60 Score=450.36 Aligned_cols=237 Identities=82% Similarity=1.223 Sum_probs=220.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+.+||+|+|||||+|++|+++|++++||.+++..++|++++|+.+.+.+.++.+.+++.+++.++|+||+|+|++.++++
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~s~~~ 85 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSISKKF 85 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHHHHHH
Confidence 45899999999999999999999988999999999999999999988777777877776667889999999999999999
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEe
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTY 197 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~ 197 (279)
++++.++|++|||+|++|||++++||++||||++.++..+.|+.+.++|||||||+|+++++|+||+++++|++|+|+||
T Consensus 86 ~~~~~~~g~~VIDlS~~fR~~~~~p~~vPEvn~~~i~~~~~~~~~~~iIanPgC~~t~~~laL~PL~~~~~i~~vvv~t~ 165 (344)
T PLN02383 86 GPIAVDKGAVVVDNSSAFRMEEGVPLVIPEVNPEAMKHIKLGKGKGALIANPNCSTIICLMAVTPLHRHAKVKRMVVSTY 165 (344)
T ss_pred HHHHHhCCCEEEECCchhhcCCCCceECCCcCHHHHHhhhhcccCCcEEECCCcHHHHHHHHHHHHHHcCCeeEEEEEee
Confidence 99999999999999999999999999999999999986432222356999999999999999999999999999999999
Q ss_pred ecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 198 QAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 198 q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
||+|||||++++||.+||+.+++|+++.++.|+.+++||++||++.|+++|||+||+|++.|++|||+.+++.|+.|
T Consensus 166 ~~vSGAG~~~~~~l~~q~~~~l~~~~~~~~~~~~~~ayn~~ph~~~~~~~g~~~~E~~~~~e~~kil~~~~~~v~~t 242 (344)
T PLN02383 166 QAASGAGAAAMEELEQQTREVLEGKPPTCNIFAQQYAFNLFSHNAPMQENGYNEEEMKLVKETRKIWNDDDVKVTAT 242 (344)
T ss_pred ecccccCHHHHHHHHHHHHHHhcCCCCchhccCCccccccccccCccccCCCChHHHHHHHHHHHHhCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888888777
No 7
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=2.2e-60 Score=447.70 Aligned_cols=231 Identities=32% Similarity=0.516 Sum_probs=216.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|+||+|+|||||+|++|+|+|.+++||..+++.+.|++++|+.+.+.+.++.+.+.+.++|+++|+||+|+|++++++++
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~~~~vD~vFla~p~~~s~~~v 83 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFDFSQVQLAFFAAGAAVSRSFA 83 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHHhcCCCEEEEcCCHHHHHHHH
Confidence 48999999999999999999998888999999999999999999887777888877766678999999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEee
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q 198 (279)
+++.++|++|||+|++||++ ++||++||||+++++.++ +.++|||||||+|+++++|+||++.+++++|+|+|||
T Consensus 84 ~~~~~~G~~VIDlS~~fR~~-~~pl~lPEvn~~~i~~~~----~~~iIAnPgC~~t~~~laL~PL~~~~~~~~v~v~t~~ 158 (336)
T PRK05671 84 EKARAAGCSVIDLSGALPSA-QAPNVVPEVNAERLASLA----APFLVSSPSASAVALAVALAPLKGLLDIQRVQVTACL 158 (336)
T ss_pred HHHHHCCCeEEECchhhcCC-CCCEEecccCHHHHcccc----CCCEEECCCcHHHHHHHHHHHHHHhcCCCEEEEEEee
Confidence 99999999999999999996 789999999999998543 4789999999999999999999988889999999999
Q ss_pred cccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 199 AASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 199 ~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
|+|||||++++||+.|+..++|+++.+++.||+||+||++||+|+|.++|||+||+|+..|++|||+.+++.|+.|
T Consensus 159 ~vSGaG~~~~~~L~~~~~~~~n~~~y~~~~~~~~iafn~~P~ig~~~~~gh~~eE~r~~~Ei~kiL~~~~~~v~~t 234 (336)
T PRK05671 159 AVSSLGREGVSELARQTAELLNARPLEPRFFDRQVAFNLLAQVGAPDAQGHTALERRLVAELRQLLGLPELKISVT 234 (336)
T ss_pred cCcccCcccchHHHHHHHHHhCCCCccccccccccccccccccCccccCCccHHHHHHHHHHHHHhCCCCCcEEEE
Confidence 9999999999999999999889999999999999999999999999999999999999999999999887777766
No 8
>PRK06901 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=1.4e-58 Score=429.01 Aligned_cols=217 Identities=22% Similarity=0.350 Sum_probs=202.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-CCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
|.+++||| ||||.||++++++|++|+||.-++.+++++ +++|+.+.|.++++.+++++.++|.++|++|| +|.++++
T Consensus 1 ~~~~~iAi-GATg~VG~~~l~~Leer~fpv~~l~l~~s~~~s~gk~i~f~g~~~~V~~l~~~~f~~vDia~f-ag~~~s~ 78 (322)
T PRK06901 1 MATLNIAI-AAEFELSEKLLEALEQSDLEIEQISIVEIEPFGEEQGIRFNNKAVEQIAPEEVEWADFNYVFF-AGKMAQA 78 (322)
T ss_pred CCcceEEE-ecCcHHHHHHHHHHHhcCCchhheeecccccccCCCEEEECCEEEEEEECCccCcccCCEEEE-cCHHHHH
Confidence 34689999 999999999999999999999999999999 99999999999999999999889999999999 9999999
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEE
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVS 195 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vt 195 (279)
+|++.+.++||.|||||++|||++|+||++||||+++++.++ +.+||+||||+|++++++|+||++.++|++++|+
T Consensus 79 ~~ap~a~~aG~~VIDnSsa~Rmd~dVPLVVPEVN~e~l~~~~----~~~IIanPNCsTi~l~~aL~pL~~~~~l~rv~Vs 154 (322)
T PRK06901 79 EHLAQAAEAGCIVIDLYGICAALANVPVVVPSVNDEQLAELR----QRNIVSLPDPQVSQLALALAPFLQEQPLSQIFVT 154 (322)
T ss_pred HHHHHHHHCCCEEEECChHhhCCCCCCeecccCCHHHHhcCc----CCCEEECCcHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 999999999999999999999999999999999999998542 3579999999999999999999999999999999
Q ss_pred EeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCc-cEEee
Q 023678 196 TYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKM-NFFVS 274 (279)
Q Consensus 196 t~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~-~v~~~ 274 (279)
|||++||+|++|++||++||+.++||++.++.. +||+||+|||||. +|++|+|||| +++ +|+.|
T Consensus 155 TyQavSGaG~~gv~eL~~qt~~~~n~~~~~~~~--~~iAFNviP~ig~-----------~m~~EtrKIl--~~l~~VsaT 219 (322)
T PRK06901 155 SLLPASYTDAETVKKLAGQTARLLNGIPLDEEE--QRLAFDVFPANAQ-----------NLELQLQKIF--PQLENVTFH 219 (322)
T ss_pred eecchhhcCHhHHHHHHHHHHHHhCCCCCCCCc--eeeeccccccCCc-----------cHHHHHHHHh--CCcccEEEE
Confidence 999999999999999999999999998876654 8999999999993 2999999999 667 66655
No 9
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=100.00 E-value=9.6e-55 Score=409.41 Aligned_cols=232 Identities=55% Similarity=0.820 Sum_probs=212.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
++||+|+|||||+|++|+++|.+|+||.+++++++++++.|+.+.+.+.++.+.+++..+|.++|+||+|+|++.+++++
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~s~~~~ 80 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSVSKKYA 80 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHHHHHHH
Confidence 47999999999999999999999999999999999999999988876667777776655678999999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEee
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q 198 (279)
++++++|++|||+|++||+++++||++||||++.++... +.++|||||||+|+++++|+||+++++|++++|+|||
T Consensus 81 ~~~~~~G~~VIDlS~~~R~~~~~p~~lpevn~~~i~~~~----~~~iVanp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~ 156 (334)
T PRK14874 81 PKAAAAGAVVIDNSSAFRMDPDVPLVVPEVNPEALAEHR----KKGIIANPNCSTIQMVVALKPLHDAAGIKRVVVSTYQ 156 (334)
T ss_pred HHHHhCCCEEEECCchhhcCCCCCeEcCCcCHHHHhhhh----cCCeEECccHHHHHHHHHHHHHHHhcCceEEEEEEEe
Confidence 999999999999999999998999999999999997410 1379999999999999999999999999999999999
Q ss_pred cccccChhhHHHHHHHHHHHhc--CCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 199 AASGAGAAAMEELELQTREVLE--GKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 199 ~vSGaG~~~~~El~~qt~~l~~--g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
|+|||||++++|+..|+...++ +++.++..|+++++||++||+|+++++|++.||+|++.|++|||+.+++.|+.+
T Consensus 157 ~~SGaG~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~niip~~~~~~~~gh~~eE~ki~~el~~il~~~~~~v~~t 234 (334)
T PRK14874 157 AVSGAGKAGMEELFEQTRAVLNAAVDPVEPKKFPKPIAFNVIPHIDVFMDDGYTKEEMKMVNETKKILGDPDLKVSAT 234 (334)
T ss_pred chhhCChhhHHHHHHHHHHHHhhccCCCCccccCccccCcccCcCCccccCCCcHHHHHHHHHHHHHhCCCCCeEEEE
Confidence 9999999999999999999986 555667789999999999999999999999999999999999998788877666
No 10
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=100.00 E-value=1.2e-54 Score=409.44 Aligned_cols=230 Identities=51% Similarity=0.770 Sum_probs=213.1
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHHH
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPI 120 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~~ 120 (279)
||+|+|||||+|++|+++|.+|+||.++++.+++.+++|+.+.+.+.++.+.+++.+++.++|+||+|+|++.+++++++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~s~~~a~~ 80 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSVSKEFAPK 80 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHHHHHHHHH
Confidence 68999999999999999999989999999999999999999988777777888776677899999999999999999999
Q ss_pred HHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEeecc
Q 023678 121 AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAA 200 (279)
Q Consensus 121 ~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~v 200 (279)
++++|++|||+|++||+++++||++||||++.++.-. ..++|||||||+++++++|+||++.++|++++|+||||+
T Consensus 81 ~~~~G~~VID~ss~~R~~~~~p~~vpevN~~~i~~~~----~~~iianp~C~~t~~~l~l~pL~~~~~i~~i~vtt~~~v 156 (339)
T TIGR01296 81 AAKCGAIVIDNTSAFRMDPDVPLVVPEVNLEDLKEFN----TKGIIANPNCSTIQMVVVLKPLHDEAKIKRVVVSTYQAV 156 (339)
T ss_pred HHHCCCEEEECCHHHhCCCCCCEEeCCcCHHHHhhCc----cCCEEECCCcHHHHHHHHHHHHHHhcCccEEEEEeeech
Confidence 9999999999999999998999999999999997410 245999999999999999999999999999999999999
Q ss_pred cccChhhHHHHHHHHHHHhcCCCCCc-------cccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCCccEEe
Q 023678 201 SGAGAAAMEELELQTREVLEGKPPTC-------KIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFV 273 (279)
Q Consensus 201 SGaG~~~~~El~~qt~~l~~g~~~~~-------~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~v~~ 273 (279)
||+|+++++||++|++.++++...+. ..|+++++||+|||++++++++++.||+|+..|++||+|.++++|+.
T Consensus 157 SgaG~~~~~~l~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~NiIp~~~~~~~~~~~~Ee~ki~~el~~i~~~~~~~v~~ 236 (339)
T TIGR01296 157 SGAGNAGVEELYNQTKAKLEGRENNPYIGAPKAKKFPYQIAFNAIPHIDDFNDDGYTKEETKMLFETRKIMGIPDFKVSA 236 (339)
T ss_pred hhcChhhHHHHHHHHHHHhcCCCCCccccccccccCCCcccccccCcCCCcccCCCCHHHHHHHHHHHHHhCCCCCcEEE
Confidence 99999999999999999998776665 78999999999999999999999999999999999999877788777
Q ss_pred e
Q 023678 274 S 274 (279)
Q Consensus 274 ~ 274 (279)
+
T Consensus 237 t 237 (339)
T TIGR01296 237 T 237 (339)
T ss_pred E
Confidence 7
No 11
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=100.00 E-value=4.1e-43 Score=331.95 Aligned_cols=203 Identities=25% Similarity=0.412 Sum_probs=168.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceee--eC---Cc-eeEEeecCccCC-CCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLS--FQ---DK-AYTVEELTEDSF-DGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~--~~---~~-~~~v~~~d~~~~-~~~DvVf~a~g~ 111 (279)
+||+|+|||||+|++++++|.+| |.++++.+ .|+++.|+.+. +. +. ...+.+.+.+++ .++|+||+|+|+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h--P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~ 78 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH--PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPH 78 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC--CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCc
Confidence 58999999999999999999987 99999965 67778888665 22 11 334554444444 489999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCC-------------------CCceeeccCCHHhhhccccCCCCCcEEECCCCh
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVE-------------------NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~-------------------~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~ 172 (279)
+.+++++++++++|++|||+|++||+++ ++||++||+|++.++ +.++|||||||
T Consensus 79 ~~s~~~~~~~~~~G~~VIDlS~~fR~~~~~~y~~~y~~~~~~~~~~~~~~y~lPE~n~~~i~-------~~~iianPgC~ 151 (346)
T TIGR01850 79 GVSAELAPELLAAGVKVIDLSADFRLKDPEVYEKWYGFEHAGPELLQEAVYGLPELHREEIK-------GARLIANPGCY 151 (346)
T ss_pred hHHHHHHHHHHhCCCEEEeCChhhhcCChhhhHHhcCCCCCChhhhcCceEECCccCHHHhC-------CCcEEEcCCcH
Confidence 9999999999999999999999999997 689999999999987 57899999999
Q ss_pred HHHHHHhhhchhhhcCcc--EEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 173 TIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 173 tt~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
+|+++++|+||++.++|+ +|+|+||||+|||||++++++..++. + .++| .+|++||. +
T Consensus 152 ~t~~~l~L~PL~~~~~i~~~~i~v~~~sgvSGaG~~~~~~~~~~~~---~-----~~~~----~y~~~~h~-------h- 211 (346)
T TIGR01850 152 PTATLLALAPLLKEGLIDPTSIIVDAKSGVSGAGRKASPANHFPEV---N-----ENLR----PYKVTGHR-------H- 211 (346)
T ss_pred HHHHHHHHHHHHHcCCCCCCcEEEEEEEECcccCcCccccccchhh---c-----CCee----eeccCCcC-------c-
Confidence 999999999999998886 79999999999999999999876554 1 1233 34777765 3
Q ss_pred HHHHhHHHHHHHhcCCCCccEEee
Q 023678 251 EEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 251 ~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+..+++|++|+++ +++.|+.|
T Consensus 212 --~~Ei~~~l~~~~~-~~~~v~ft 232 (346)
T TIGR01850 212 --TPEIEQELGRLAG-GKVKVSFT 232 (346)
T ss_pred --HHHHHHHHHHhcC-CCCCEEEE
Confidence 3349999999997 56777766
No 12
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-42 Score=323.63 Aligned_cols=212 Identities=24% Similarity=0.384 Sum_probs=176.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCc------eeEEeecCccC--CCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK------AYTVEELTEDS--FDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~------~~~v~~~d~~~--~~~~DvVf~a~ 109 (279)
+|+||+|+|||||+|.||+|+|.+| |.+++..+.|++.+|+++..... ++.++.++++. ..++|+||+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~H--p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlal 78 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGH--PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLAL 78 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcC--CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEec
Confidence 3689999999999999999999998 99998888888889998774222 23444444333 35699999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCCCCCC-------------------CCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMV-------------------ENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~~R~~-------------------~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
|+++|+++++++.+.|++|||+|+|||++ +++.|++||+|+++|+ ++++|||||
T Consensus 79 Phg~s~~~v~~l~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~-------~A~lIAnPG 151 (349)
T COG0002 79 PHGVSAELVPELLEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIR-------GAKLIANPG 151 (349)
T ss_pred CchhHHHHHHHHHhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHh-------cCCEeeCCC
Confidence 99999999999999999999999999998 5678999999999998 689999999
Q ss_pred ChHHHHHHhhhchhhhcCc--cE-EEEEEeecccccChhhH-----------------------HHHHHHHHHHhcCCCC
Q 023678 171 CSTIICLMAATPLHRRAKV--TR-MVVSTYQAASGAGAAAM-----------------------EELELQTREVLEGKPP 224 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i--~~-v~vtt~q~vSGaG~~~~-----------------------~El~~qt~~l~~g~~~ 224 (279)
||+|+.+|+|+||.++..| +. ++|++++|+|||||++. +|++|+++.+. ++..
T Consensus 152 CypTa~iLal~PL~~~~ll~~~~~~ivdakSG~SGaGrk~s~~~~~~e~~~~~~~Y~~~~HrH~pEi~q~l~~l~-~~~~ 230 (349)
T COG0002 152 CYPTAAILALAPLVKAGLLDPDSPPIVDAKSGVSGAGRKASVKNHFPEVNDSLRPYGLTGHRHTPEIEQHLGRLA-GRKV 230 (349)
T ss_pred chHHHHHHHHHHHHHcCCcCCCCceEEEEeEecCcCCCCccccccchhhccccccccccccCchHHHHHHhhhcc-cCcC
Confidence 9999999999999998765 44 69999999999999983 99999999884 3322
Q ss_pred CccccccccccccccCCCCcccCCChHHHH-hHHHHHHHhc
Q 023678 225 TCKIFSQQYAFNLFSHNAPVLENGYNEEEM-KMVKETRKIW 264 (279)
Q Consensus 225 ~~~~f~~~iafN~iP~i~~~~~~g~t~eE~-k~~~E~~kil 264 (279)
+.+|.++++|+.+|++.+.|..-+. -...|+++++
T Consensus 231 -----~v~FtPhl~p~~RGIl~Ti~~~l~~~~t~~~i~~~y 266 (349)
T COG0002 231 -----PVIFTPHLGPFVRGILATIYLKLKDLVTLEELHAAY 266 (349)
T ss_pred -----ceEEecccccccceEEEEEEEecCCCCCHHHHHHHH
Confidence 2358899999999999998865443 1344555554
No 13
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=4e-43 Score=313.51 Aligned_cols=227 Identities=52% Similarity=0.744 Sum_probs=208.1
Q ss_pred CEEE-EECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceeeeCC------------ceeEEeecCccCCCCCcEE
Q 023678 40 PSVA-VVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQD------------KAYTVEELTEDSFDGVDIA 105 (279)
Q Consensus 40 ~kVa-IiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~~~~------------~~~~v~~~d~~~~~~~DvV 105 (279)
.|+| |+||||.||++++.+|.+| |++++..+ +|.|++|+++.+.+ .++.+.+.+.+.|.+||+|
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdh--P~f~ikvLgAS~RSAGK~ya~a~~wkqt~~lp~~~~e~~V~ec~~~~F~ecDIv 81 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDH--PYFSIKVLGASKRSAGKRYAFAGNWKQTDLLPESAHEYTVEECTADSFNECDIV 81 (361)
T ss_pred ccccceeeccchhHHHHHHHhccC--CcceeeeecccccccCCceEecccchhcccccchhhhhhHhhcChhhcccccEE
Confidence 4666 9999999999999999988 99999988 89999999998743 2455666677789999999
Q ss_pred EecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccC-----CCCCcEEECCCChHHHHHHhh
Q 023678 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG-----MGKGALIANPNCSTIICLMAA 180 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~-----~~~~~iVanPgC~tt~l~laL 180 (279)
|+.++.+.+.++.+.+.++|..|||++..||+.+++||++||||+|+++.++.| ..+..||+||||+|..++++|
T Consensus 82 fsgldad~ageiek~f~eag~iiVsNaknyRre~~VPLvvP~VNpehld~ik~~~~~~k~~~G~iI~nsNCSTa~~v~pl 161 (361)
T KOG4777|consen 82 FSGLDADIAGEIEKLFAEAGTIIVSNAKNYRREDGVPLVVPEVNPEHLDGIKVGLDTGKMGKGAIIANSNCSTAICVMPL 161 (361)
T ss_pred EecCCchhhhhhhHHHHhcCeEEEeCchhcccCCCCceEecccCHHHhhhheeccccCCCCCceEEecCCCCeeeEEeec
Confidence 999999999999999999999999999999999999999999999999877655 235789999999999999999
Q ss_pred hchhhhc-CccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHH
Q 023678 181 TPLHRRA-KVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (279)
Q Consensus 181 ~PL~~~~-~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E 259 (279)
+||+.+| .|++.+++|||++||||.++..|+.+++..++.|.+-+.+.|..+.++|+.|+...+..++|++||++.+.+
T Consensus 162 kpL~~~fgpi~~~~v~t~QAiSGAG~apgv~~vdildnilp~iggee~k~ewet~kiL~s~n~~i~~~~l~ee~~vsaqc 241 (361)
T KOG4777|consen 162 KPLHHHFGPIKRMVVSTYQAISGAGAAPGVELVDILDNILPGIGGEENKFEWETAKILFSHNAPILDNGLNEEEMVSAQC 241 (361)
T ss_pred hhHHhhccchhhhhhhhhhhhccCCcCCCchHHHHHHhhcCCCCccchhhhHHHHHhhhccCCccccccccHHHhhhhhc
Confidence 9999998 689999999999999999999999999999998888888899999999999999999999999999999999
Q ss_pred HHHhcCCCC
Q 023678 260 TRKIWVSFK 268 (279)
Q Consensus 260 ~~kil~~~~ 268 (279)
.|++..+-.
T Consensus 242 nRv~v~Dgh 250 (361)
T KOG4777|consen 242 NRVIVNDGH 250 (361)
T ss_pred ceeeEecCc
Confidence 999997643
No 14
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=100.00 E-value=1.3e-41 Score=325.07 Aligned_cols=203 Identities=21% Similarity=0.308 Sum_probs=166.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC-----ce-eEEeecCccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-----KA-YTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~-----~~-~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
+++||+|+|||||+|++|+++|++| |.+++..+++++++|+.+.+.+ .+ ..+.+++.+++.++|+||+|+|+
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~h--P~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~ 114 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANH--PDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH 114 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhC--CCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence 4579999999999999999999999 9999999999889998766432 12 22444444456889999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCCC--------Cc-----------eeeccCCHHhhhccccCCCCCcEEECCCCh
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVEN--------VP-----------LVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~~--------vp-----------lvvPevN~~~i~~~~~~~~~~~iVanPgC~ 172 (279)
+.++++++.+ ++|++|||+|++||++++ +| |++||+|++.++ +.++|||||||
T Consensus 115 ~~s~~i~~~~-~~g~~VIDlSs~fRl~~~~~y~~~y~~p~~~pe~~~~~~yglpE~~r~~i~-------~~~iIAnPgC~ 186 (381)
T PLN02968 115 GTTQEIIKAL-PKDLKIVDLSADFRLRDIAEYEEWYGHPHRAPELQKEAVYGLTELQREEIK-------SARLVANPGCY 186 (381)
T ss_pred HHHHHHHHHH-hCCCEEEEcCchhccCCcccchhccCCCCCCcccchhhhcccchhCHHHhc-------CCCEEECCCCH
Confidence 9999999996 789999999999999987 56 566666666665 57899999999
Q ss_pred HHHHHHhhhchhhhcCc--cEEEEEEeecccccChhhHHH-HHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 173 TIICLMAATPLHRRAKV--TRMVVSTYQAASGAGAAAMEE-LELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 173 tt~l~laL~PL~~~~~i--~~v~vtt~q~vSGaG~~~~~E-l~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+|+++++|+||++.++| ++++|+||||+|||||+++++ +..|+.. + + +++.+|..||++++
T Consensus 187 ~t~~~laL~PL~~~~~i~~~~iiv~a~sgvSGAG~~~~~~~l~~e~~~---------n-~-~~y~~~~h~h~pEi----- 250 (381)
T PLN02968 187 PTGIQLPLVPLVKAGLIEPDNIIIDAKSGVSGAGRGAKEANLYTEIAE---------G-I-GAYGVTRHRHVPEI----- 250 (381)
T ss_pred HHHHHHHHHHHHHcCCCCCceEEEEEeeeccccCcccchhhhHHHhcc---------c-c-eeeccCCCCCcchH-----
Confidence 99999999999999999 689999999999999999999 7776663 1 1 46789999998752
Q ss_pred hHHHHhHHHHHHHhcCCCCccEEee
Q 023678 250 NEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
| .++.++++ +++.|+.|
T Consensus 251 ---e----~~~~~~~~-~~~~v~ft 267 (381)
T PLN02968 251 ---E----QGLADAAG-SKVTPSFT 267 (381)
T ss_pred ---H----HHHHHHhC-CCCCEEEE
Confidence 3 33357776 46777766
No 15
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=100.00 E-value=1.6e-41 Score=316.34 Aligned_cols=202 Identities=15% Similarity=0.200 Sum_probs=160.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
++||||+|||||+|++|+|+|.+| |.+++..+.++... . + ..+.+.+.++|+||+|+|++++++++
T Consensus 2 ~~~VaIvGAtGy~G~eLlrlL~~h--p~~~l~~~~s~~~~--~-------~---~~~~~~~~~~DvvFlalp~~~s~~~~ 67 (313)
T PRK11863 2 KPKVFIDGEAGTTGLQIRERLAGR--SDIELLSIPEAKRK--D-------A---AARRELLNAADVAILCLPDDAAREAV 67 (313)
T ss_pred CcEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEecCCCC--c-------c---cCchhhhcCCCEEEECCCHHHHHHHH
Confidence 589999999999999999999999 99998888654322 1 1 11234567899999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCcc---EEEEE
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVT---RMVVS 195 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~---~v~vt 195 (279)
+++.++|++|||+|++||+++++||++||+|++..+.++ +.++|||||||+|+++++|+||++...++ .++++
T Consensus 68 ~~~~~~g~~VIDlSadfRl~~~~~yglPEvn~~~~~~i~----~~~~IanPgC~~Ta~~laL~PL~~~~li~~~~~i~i~ 143 (313)
T PRK11863 68 ALIDNPATRVIDASTAHRTAPGWVYGFPELAPGQRERIA----AAKRVANPGCYPTGAIALLRPLVDAGLLPADYPVSIN 143 (313)
T ss_pred HHHHhCCCEEEECChhhhcCCCCeEEcCccCHHHHHHhh----cCCeEEcCCcHHHHHHHHHHHHHHcCCcccCceEEEE
Confidence 999999999999999999999999999999876655443 57899999999999999999999987774 37899
Q ss_pred EeecccccChhhHHHHH----------------------HHHHHHhcCCCCCccccccccccccccCCCCcccCCChHH-
Q 023678 196 TYQAASGAGAAAMEELE----------------------LQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE- 252 (279)
Q Consensus 196 t~q~vSGaG~~~~~El~----------------------~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~e- 252 (279)
+++|+|||||++++++. -++.+.+ |.- ....|.++++|+.+|++.+.|.+-
T Consensus 144 a~SG~SGAG~~~~~~~~~~~~~~~~n~~~Y~~~~~HrH~pEi~~~l-~~~-----~~~~F~Phl~p~~rGil~Ti~~~~~ 217 (313)
T PRK11863 144 AVSGYSGGGKAMIAAYEAAPDGKAPAFRLYGLGLAHKHLPEMQAHA-GLA-----RRPIFTPSVGNFRQGMLVTVPLHLR 217 (313)
T ss_pred EccccccCCccchHHHhhhhhhhccCeeeccCCcCCcchHHHHHHh-ccc-----cCcEEEeeEccccCcEEEEEEEEec
Confidence 99999999999988876 1111111 111 123478899999999999999773
Q ss_pred ---HHhHHHHHHHhc
Q 023678 253 ---EMKMVKETRKIW 264 (279)
Q Consensus 253 ---E~k~~~E~~kil 264 (279)
+.-...|++++|
T Consensus 218 ~~~~~~~~~~i~~~~ 232 (313)
T PRK11863 218 LLPGGPTAEDLHAAL 232 (313)
T ss_pred ccCCCCCHHHHHHHH
Confidence 222344555554
No 16
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=100.00 E-value=4.8e-41 Score=317.51 Aligned_cols=196 Identities=27% Similarity=0.419 Sum_probs=164.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC-----Cc-eeEEeecCccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-----DK-AYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~-----~~-~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
|+||+|+||||++|++++++|.++ |.++++.+.++++.|+.+... .. ...+.+++...+.++|+||+|+|++
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~--p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH--PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC--CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 479999999999999999999987 999999998877777755421 11 2345555433456899999999999
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCCCCCC-C------------------CceeeccCCHHhhhccccCCCCCcEEECCCChH
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAFRMVE-N------------------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCST 173 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~R~~~-~------------------vplvvPevN~~~i~~~~~~~~~~~iVanPgC~t 173 (279)
.+.+++++++++|+.|||+|++||+++ + ++|++||+|++.++ +.++||||||++
T Consensus 80 ~~~~~v~~a~~aG~~VID~S~~fR~~~~~~~~~~y~~~~~~~~~~~~~~~~lpe~~~~~i~-------~~~iIanPgC~~ 152 (343)
T PRK00436 80 VSMDLAPQLLEAGVKVIDLSADFRLKDPEVYEKWYGFEHAAPELLKEAVYGLPELNREEIK-------GARLIANPGCYP 152 (343)
T ss_pred HHHHHHHHHHhCCCEEEECCcccCCCCchhhHHhcCCCCCCchhhcCceeecCccCHHHhc-------CCCEEECCCCHH
Confidence 999999999999999999999999976 5 89999999999997 468999999999
Q ss_pred HHHHHhhhchhhhcCcc--EEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChH
Q 023678 174 IICLMAATPLHRRAKVT--RMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251 (279)
Q Consensus 174 t~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~ 251 (279)
|+++++|+||++.++|+ +++|+||||+||||+++++++..++. + .++ ++||++|+. ++.
T Consensus 153 t~~~l~L~PL~~~~~i~~~~i~v~~~~g~SGaG~~~~~~~~~~~~---~-----~~~----~~y~~~~h~-------h~~ 213 (343)
T PRK00436 153 TASLLALAPLLKAGLIDPDSIIIDAKSGVSGAGRKASEGTLFSEV---N-----ENL----RPYKVGGHR-------HTP 213 (343)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEEEEecccCCCCccccccchhh---c-----CCe----eecccCCCC-------CHH
Confidence 99999999999998887 89999999999999999999865544 1 122 378888886 333
Q ss_pred HHHhHHHHHHHhcC
Q 023678 252 EEMKMVKETRKIWV 265 (279)
Q Consensus 252 eE~k~~~E~~kil~ 265 (279)
| +.+|++|+++
T Consensus 214 E---i~~~l~~~~~ 224 (343)
T PRK00436 214 E---IEQELSALAG 224 (343)
T ss_pred H---HHHHHHHhcC
Confidence 3 8889999986
No 17
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=100.00 E-value=2.7e-40 Score=312.04 Aligned_cols=205 Identities=34% Similarity=0.472 Sum_probs=170.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceeeeC----------C--ceeEEeecCccCCCCCcEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ----------D--KAYTVEELTEDSFDGVDIAL 106 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~~~----------~--~~~~v~~~d~~~~~~~DvVf 106 (279)
+||+|+||||++|++|+++|.+| |.+++..+ .++++.|+.+... + .++.+.+.+++.+.++|+||
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~--~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf 78 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH--PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVF 78 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC--CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEE
Confidence 58999999999999999999988 88888877 4555677765410 1 23455565555567899999
Q ss_pred ecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhcc---ccCCCCCcEEECCCChHHHHHHhhhch
Q 023678 107 FSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGI---KVGMGKGALIANPNCSTIICLMAATPL 183 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~---~~~~~~~~iVanPgC~tt~l~laL~PL 183 (279)
+|+|++++.++++++.++|++|||+|++||+++++|+++||+|.+.+... ++..++.++|||||||+|+++++|+||
T Consensus 79 ~a~p~~~s~~~~~~~~~~G~~VIDlsg~fR~~~~~~~~~p~vn~~~~~~~e~~~~~~~~~~iVanPgC~~t~~~lal~pL 158 (341)
T TIGR00978 79 SALPSEVAEEVEPKLAEAGKPVFSNASNHRMDPDVPLIIPEVNSDHLELLKVQKERGWKGFIVTNPNCTTAGLTLALKPL 158 (341)
T ss_pred EeCCHHHHHHHHHHHHHCCCEEEECChhhccCCCCceeccccCHHHHhhHHhhhhhccCccEEeCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865421 111125679999999999999999999
Q ss_pred hhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHh
Q 023678 184 HRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263 (279)
Q Consensus 184 ~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~ki 263 (279)
+++++|++++|+|+||+||||++++++ .++++|++||..+ +|.+...|++|+
T Consensus 159 ~~~~~i~~v~v~t~~gvSgaG~~~~~~--------------------~~~~~Ni~py~~~--------~ehrh~~Ei~~i 210 (341)
T TIGR00978 159 IDAFGIKKVHVTTMQAVSGAGYPGVPS--------------------MDILDNIIPHIGG--------EEEKIERETRKI 210 (341)
T ss_pred HHhCCCcEEEEEEEEccCCCCCCCCcc--------------------chhhCCeEecCcH--------HHHHHHHHHHHH
Confidence 999999999999999999999987641 1468999999986 889999999999
Q ss_pred cCCC--------CccEEee
Q 023678 264 WVSF--------KMNFFVS 274 (279)
Q Consensus 264 l~~~--------~~~v~~~ 274 (279)
|+.. ++.|+.+
T Consensus 211 l~~~~~~~~~~~~~~v~~t 229 (341)
T TIGR00978 211 LGKLENGKIEPAPFSVSAT 229 (341)
T ss_pred hCccccCcccCCCceEEEE
Confidence 9753 5666665
No 18
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=100.00 E-value=1.4e-40 Score=308.67 Aligned_cols=194 Identities=16% Similarity=0.244 Sum_probs=158.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.||+|+|||||+|.||+|+|.+| |++++..+.+++. +...+. +.++++|+||+|+|++++++++
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H--P~~el~~l~s~~~-------------~~~~~~~~~~~~~D~vFlalp~~~s~~~~ 66 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR--DDIELLSIAPDRR-------------KDAAERAKLLNAADVAILCLPDDAAREAV 66 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC--CCeEEEEEecccc-------------cCcCCHhHhhcCCCEEEECCCHHHHHHHH
Confidence 68999999999999999999998 9999999977643 111122 2346799999999999999999
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccE---EEEE
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTR---MVVS 195 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~---v~vt 195 (279)
+++.++|++|||+|++||+++++||++||||++..+.++ +.++|||||||+|+++++|+||++...|++ ++++
T Consensus 67 ~~~~~~g~~VIDlSadfRl~~~~~yglPEln~~~~~~i~----~a~lIAnPgC~aTa~~LaL~PL~~~~li~~~~~~~~~ 142 (310)
T TIGR01851 67 SLVDNPNTCIIDASTAYRTADDWAYGFPELAPGQREKIR----NSKRIANPGCYPTGFIALMRPLVEAGILPADFPITIN 142 (310)
T ss_pred HHHHhCCCEEEECChHHhCCCCCeEEccccCHHHHHhhc----cCCEEECCCCHHHHHHHHHHHHHHcCCccccceEEEE
Confidence 999999999999999999999999999999876655443 578999999999999999999999988854 6788
Q ss_pred EeecccccChhhHHHHHHHHH-HHh--cCCCC----------Cccc-----cccccccccccCCCCcccCCChHH
Q 023678 196 TYQAASGAGAAAMEELELQTR-EVL--EGKPP----------TCKI-----FSQQYAFNLFSHNAPVLENGYNEE 252 (279)
Q Consensus 196 t~q~vSGaG~~~~~El~~qt~-~l~--~g~~~----------~~~~-----f~~~iafN~iP~i~~~~~~g~t~e 252 (279)
+++|+|||||++++++.+|++ .-. +.++. +... ....|.++++|+.+|++.|.|..-
T Consensus 143 a~SG~SGAGr~~~~~l~~q~~~~e~~~~~~~Y~~~~~HrH~pEi~q~l~~~~~v~FtPhl~p~~RGil~Ti~~~l 217 (310)
T TIGR01851 143 AVSGYSGGGKAMIADYEQGSADNPSLQPFRIYGLALTHKHLPEMRVHSGLALPPIFTPAVGNFAQGMAVTIPLHL 217 (310)
T ss_pred eccccCccChhhhHHhhhcccchhhccCceeccCCCCCCcHHHHHHHhCCCCCEEEEeEEccccCcEEEEEEEEe
Confidence 888889999999999998876 111 01111 1100 124588999999999999998664
No 19
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=100.00 E-value=1.1e-38 Score=301.88 Aligned_cols=207 Identities=35% Similarity=0.480 Sum_probs=172.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceeee----C------C--ceeEEeecCccCCCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSF----Q------D--KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~~----~------~--~~~~v~~~d~~~~~~~D 103 (279)
|+++||+|+||||++|++|+++|.+| |.++++.+ .++++.|+.+.. . + .++.+...+++.+.++|
T Consensus 1 ~~~~~V~I~GatG~iG~~l~~~L~~~--p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~D 78 (349)
T PRK08664 1 MMKLKVGILGATGMVGQRFVQLLANH--PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVD 78 (349)
T ss_pred CCCcEEEEECCCCHHHHHHHHHHHcC--CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCC
Confidence 34689999999999999999999987 99999988 777788876641 1 0 23455555555667899
Q ss_pred EEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccc---cCC-CCCcEEECCCChHHHHHHh
Q 023678 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK---VGM-GKGALIANPNCSTIICLMA 179 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~---~~~-~~~~iVanPgC~tt~l~la 179 (279)
+||+|++++++.++++++.++|++|||+|++||+++++|+.+||+|++.+.... ... ++.++|||||||+|+++++
T Consensus 79 vVf~a~p~~~s~~~~~~~~~~G~~vIDls~~fR~~~~~~~~~p~vn~~~yg~~e~~~~~~~~~~~iVa~p~C~~t~~~l~ 158 (349)
T PRK08664 79 IVFSALPSDVAGEVEEEFAKAGKPVFSNASAHRMDPDVPLVIPEVNPEHLELIEVQRKRRGWDGFIVTNPNCSTIGLVLA 158 (349)
T ss_pred EEEEeCChhHHHHHHHHHHHCCCEEEECCchhcCCCCCCcCChhhCHHHHcChHhhHhhccCCceEEEccCHHHHHHHHH
Confidence 999999999999999999999999999999999998899999999998653211 000 1357999999999999999
Q ss_pred hhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHH
Q 023678 180 ATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKE 259 (279)
Q Consensus 180 L~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E 259 (279)
|+||++ ++|++++|+|+||+||+|+++.++. .+++|++||..+ +|.|...|
T Consensus 159 l~pL~~-~gl~~i~v~~~~g~SgaG~~~~~~~--------------------~~~~N~~p~~~~--------~ehrh~~E 209 (349)
T PRK08664 159 LKPLMD-FGIERVHVTTMQAISGAGYPGVPSM--------------------DIVDNVIPYIGG--------EEEKIEKE 209 (349)
T ss_pred HHHHHH-CCCcEEEEEEEeccccCCcccchhh--------------------hhhcCcccccCc--------hhhhhhHH
Confidence 999999 8999999999999999999987632 157999999987 88999999
Q ss_pred HHHhcCCC--------CccEEee
Q 023678 260 TRKIWVSF--------KMNFFVS 274 (279)
Q Consensus 260 ~~kil~~~--------~~~v~~~ 274 (279)
++|+|+.. ++.|+.+
T Consensus 210 i~~~l~~~~~~~~~~~~~~v~~t 232 (349)
T PRK08664 210 TLKILGKFEGGKIVPADFPISAT 232 (349)
T ss_pred HHHHhhhcccccccCCCceEEEE
Confidence 99999763 5666665
No 20
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-36 Score=280.59 Aligned_cols=203 Identities=18% Similarity=0.221 Sum_probs=168.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEe---------------ec--------CCCCceeeeCCceeEEe--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLA---------------SK--------RSAGKQLSFQDKAYTVE-- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~---------------s~--------~s~G~~~~~~~~~~~v~-- 92 (279)
++||||+|+ |.+|+.++|.|.+++|| .++++++. |. ++.|..+.++++.+.+.
T Consensus 1 ~~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~~v~~~~~~l~v~g~~i~v~~~ 79 (336)
T PRK13535 1 TIRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAWDVRQERDQLFVGDDAIRLLHE 79 (336)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEc
Confidence 479999998 99999999999988665 46665443 32 34566666677777776
Q ss_pred -ecCccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 93 -ELTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 93 -~~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
+++..+| .++|+||+|+|...++++++.++++|+++||+|+++|+++++ ++|||||++.++. ..+|||||
T Consensus 80 ~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~~~d~~~-~vV~gVN~~~~~~------~~~IISna 152 (336)
T PRK13535 80 RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPGSNDLDA-TVVYGVNHDQLRA------EHRIVSNA 152 (336)
T ss_pred CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCCcccCCCC-eEEeCcCHHHhCc------CCCEEECC
Confidence 4445567 589999999999999999999999999999999999988664 8999999999874 46899999
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCC
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~ 249 (279)
+|+|++++++|+||+++|+|+++.|||||++| +|+++++++.+++++ + +-++||+||+ +.
T Consensus 153 sCTTn~Lap~lk~L~~~fgI~~~~mTT~ha~t-~~Q~~vD~~~~d~rr---~---------r~~a~NiIP~-~t------ 212 (336)
T PRK13535 153 SCTTNCIIPVIKLLDDAFGIESGTVTTIHSAM-NDQQVIDAYHPDLRR---T---------RAASQSIIPV-DT------ 212 (336)
T ss_pred chHHHHHHHHHHHHHHhcCeeEEEEEEEEhhc-CCcchhhchhhcccc---c---------cEeeeccccC-cc------
Confidence 99999999999999999999999999999999 899999999877764 1 2268999998 32
Q ss_pred hHHHHhHHHHHHHhcCCCCccEEee
Q 023678 250 NEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 250 t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
++.+|++|||.....+++.+
T Consensus 213 -----gaa~a~~kilP~l~gkv~~~ 232 (336)
T PRK13535 213 -----KLAAGITRIFPQFNDRFEAI 232 (336)
T ss_pred -----HHHhhhhhcccCCCCcEEEE
Confidence 89999999994433335444
No 21
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=100.00 E-value=1e-33 Score=266.10 Aligned_cols=199 Identities=14% Similarity=0.216 Sum_probs=166.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC------------------------CCCceeeeCCceeEEe---
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------------------------SAGKQLSFQDKAYTVE--- 92 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~------------------------s~G~~~~~~~~~~~v~--- 92 (279)
+||+|.|. |.+|+.++|.+.++ +.++++++.... +.|+.+.++++.+.+.
T Consensus 3 ikigInG~-GRiGr~v~r~~~~~--~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v~~~g~~l~~~g~~i~v~~~~ 79 (334)
T PRK08955 3 IKVGINGF-GRIGRLALRAAWDW--PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEVTAEGDAIVINGKRIRTTQNK 79 (334)
T ss_pred eEEEEECc-CHHHHHHHHHHHhC--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCEEEcCCEEEECCEEEEEEecC
Confidence 79999998 99999999998877 788888776421 1233344455667776
Q ss_pred ecCccCCCCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCCh
Q 023678 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 93 ~~d~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~ 172 (279)
+++..+|+++|+||+|+|...++++++.++++||++||+|++ |+++++|++|||||++.++.. ..+|||||+|+
T Consensus 80 ~~~~~~w~gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap-~~d~d~p~vV~gVN~~~~~~~-----~~~IISnasCt 153 (334)
T PRK08955 80 AIADTDWSGCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP-VKEEGVLNIVMGVNDHLFDPA-----IHPIVTAASCT 153 (334)
T ss_pred ChhhCCccCCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC-CCCCCCceEecccCHHHhccc-----CCCEEECCccH
Confidence 455567899999999999999999999999999999999999 999889999999999998730 26799999999
Q ss_pred HHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHH
Q 023678 173 TIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEE 252 (279)
Q Consensus 173 tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~e 252 (279)
|++++++|+||+++|+|+++.+||||++| |++.+++|.+.+. .|+++.+||+||++ +|++
T Consensus 154 Tn~Lap~lk~L~~~fgI~~~~mTTvha~t------------~~q~lld~~~~d~-r~~r~~a~NiIP~~-----tGaa-- 213 (334)
T PRK08955 154 TNCLAPVVKVIHEKLGIKHGSMTTIHDLT------------NTQTILDAPHKDL-RRARACGMSLIPTT-----TGSA-- 213 (334)
T ss_pred HHHHHHHHHHHHHhcCeeEEEEEEEEecc------------CccccccCCCccc-ccchhheecccccc-----CCCc--
Confidence 99999999999999999999999999999 5666667765455 78999999999998 5565
Q ss_pred HHhHHHHHHHhcCCCCcc--EEee
Q 023678 253 EMKMVKETRKIWVSFKMN--FFVS 274 (279)
Q Consensus 253 E~k~~~E~~kil~~~~~~--v~~~ 274 (279)
+|++||| |+|. ++.+
T Consensus 214 -----~a~~kvl--P~L~gkl~~~ 230 (334)
T PRK08955 214 -----TAITEIF--PELKGKLNGH 230 (334)
T ss_pred -----cccceEc--cccCCcEEEE
Confidence 7899999 6666 5544
No 22
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=3.1e-33 Score=266.65 Aligned_cols=199 Identities=16% Similarity=0.227 Sum_probs=165.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ec---------CCCCceeeeCCceeEEee--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SK---------RSAGKQLSFQDKAYTVEE-- 93 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~---------~s~G~~~~~~~~~~~v~~-- 93 (279)
+||||+|+ |.||+.++|.|.++++|.++++++. |. .+.|+.+.+.++.+.+..
T Consensus 61 ~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v~~~~g~~l~v~gk~I~v~~~~ 139 (395)
T PLN03096 61 IKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADVKPVGDDAISVDGKVIKVVSDR 139 (395)
T ss_pred cEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcEEEecCCEEEECCEEEEEEEcC
Confidence 79999998 9999999999998888899999553 22 224555666677777764
Q ss_pred -cCccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 94 -LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 94 -~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++..+| .++|+||+|+|...+++++++++++||++||+|++ .++++|++||+||++.+.. ..+|||||+
T Consensus 140 dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap--~~~~~ptvV~GVN~~~l~~------~~~IISnaS 211 (395)
T PLN03096 140 NPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAP--GKGDIPTYVVGVNADDYKH------SDPIISNAS 211 (395)
T ss_pred CcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCC--CCCCCCeEeCccCHHHhcc------CCCEEECCc
Confidence 344567 48999999999999999999999999999999999 5667899999999999873 468999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|+|++++++++||+++|+|+++.|||+|++||. +.++++...+.+ |+++.+||+||++ +|++
T Consensus 212 CTTn~LAp~lkvL~~~fGI~~g~mTTiHa~T~~------------Q~llD~~~~d~r-r~Raaa~NiIPts-----TGaa 273 (395)
T PLN03096 212 CTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGD------------QRLLDASHRDLR-RARAAALNIVPTS-----TGAA 273 (395)
T ss_pred hHHHHHHHHHHHHHHhcCeeEEEEEEEEccccc------------cccccCCCCccc-cchhhhccccccC-----CCcc
Confidence 999999999999999999999999999999998 234456555565 9999999999998 6666
Q ss_pred HHHHhHHHHHHHhcCCCCcc--EEee
Q 023678 251 EEEMKMVKETRKIWVSFKMN--FFVS 274 (279)
Q Consensus 251 ~eE~k~~~E~~kil~~~~~~--v~~~ 274 (279)
+ |++||| |+|. ++.+
T Consensus 274 k-------av~kVl--P~L~gkl~g~ 290 (395)
T PLN03096 274 K-------AVALVL--PNLKGKLNGI 290 (395)
T ss_pred h-------hhhhcc--cccCCcEEEE
Confidence 5 889998 6666 5443
No 23
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=100.00 E-value=1.8e-33 Score=263.77 Aligned_cols=194 Identities=16% Similarity=0.214 Sum_probs=161.0
Q ss_pred EEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEee---c--------------------CCCCceeeeCCceeEEe---e
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLAS---K--------------------RSAGKQLSFQDKAYTVE---E 93 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s---~--------------------~s~G~~~~~~~~~~~v~---~ 93 (279)
||||+|+ |.+|+.++|.|.+++ -+.++++.+.. . ++.|..+.+.++.+.+. +
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~~ 79 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSPT 79 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcCC
Confidence 6999997 999999999998762 13567776643 2 22344455556666665 3
Q ss_pred cCccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 94 LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 94 ~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
++..+| .++|+||+|+|...+++++++++++|+++||+|+++|+++++ ++|||||++.++. ..+|||||+|
T Consensus 80 p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~~~d~~~-~vV~gVN~~~~~~------~~~IISnasC 152 (325)
T TIGR01532 80 PEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPGASDLDA-TIVYGVNQQDLSA------EHTIVSNASC 152 (325)
T ss_pred hhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCCcCCCCc-eEEeccCHHHhCC------CCCEEeCCCc
Confidence 444457 589999999999999999999999999999999999987665 8999999999874 4689999999
Q ss_pred hHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCcccccccccc-ccccCCCCcccCCCh
Q 023678 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAF-NLFSHNAPVLENGYN 250 (279)
Q Consensus 172 ~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iaf-N~iP~i~~~~~~g~t 250 (279)
+|++++++|+||+++|+|+++.|||||++|+ |+++++++..+++. .+.+| |+||+ +.
T Consensus 153 tTn~lap~lk~L~~~fgI~~~~~tTvha~t~-~q~~vD~~~~d~r~-------------~r~a~~NiIP~-~t------- 210 (325)
T TIGR01532 153 TTNCIVPLIKLLDDAIGIESGTITTIHSAMN-DQQVIDAYHHDLRR-------------TRAASQSIIPV-DT------- 210 (325)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEEhhcC-Cccccccchhhccc-------------cchHhhCeeeC-Cc-------
Confidence 9999999999999999999999999999999 99999999877663 35688 99997 33
Q ss_pred HHHHhHHHHHHHhcCCCCcc
Q 023678 251 EEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 251 ~eE~k~~~E~~kil~~~~~~ 270 (279)
++.+|++||| |+|.
T Consensus 211 ----~~a~a~~kil--P~L~ 224 (325)
T TIGR01532 211 ----KLARGIERLF--PEFA 224 (325)
T ss_pred ----cHHHHHHHhC--cccC
Confidence 7889999999 5566
No 24
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=100.00 E-value=5e-32 Score=253.94 Aligned_cols=193 Identities=17% Similarity=0.242 Sum_probs=159.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc----------eeeeCCceeEEe---e
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK----------QLSFQDKAYTVE---E 93 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~----------~~~~~~~~~~v~---~ 93 (279)
+||||.| .|.+||.++|.+.++ +.++++++...... |+ .+.++++.+.+. +
T Consensus 3 ~~i~inG-fGRIGr~~~r~~~~~--~~~~vvaiNd~~~~~~~ayll~yDs~hg~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (331)
T PRK15425 3 IKVGING-FGRIGRIVFRAAQKR--SDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERD 79 (331)
T ss_pred eEEEEEe-eChHHHHHHHHHHHC--CCCEEEEEecCCCHHHHHHHHccccCCCCcCCcEEecCCEEEECCeEEEEEEcCC
Confidence 6999999 899999999998777 88999988643211 11 112234556665 4
Q ss_pred cCccCCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 94 LTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 94 ~d~~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
++..+|. ++|+||+|+|...++++++.++++||++||+|++ +++++|++|||||++.+. +.++||||+|
T Consensus 80 p~~~~w~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap--~~~~vp~vV~gVN~~~~~-------~~~IISnaSC 150 (331)
T PRK15425 80 PANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVMTGP--SKDNTPMFVKGANFDKYA-------GQDIVSNASC 150 (331)
T ss_pred hhhCcccccCCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCC--CCCCCCEEEcccCHHHcC-------CCCEEECCCc
Confidence 4445687 9999999999999999999999999999999999 677789999999999886 3579999999
Q ss_pred hHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChH
Q 023678 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251 (279)
Q Consensus 172 ~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~ 251 (279)
+|++++++|+||++.|+|+++.+||+|++|+. + .+++|.+.++..|+++.+||+||++ +|++
T Consensus 151 tTn~Lapvlk~L~~~fgI~~g~mTTvha~T~~-q-----------~llD~~~~~d~r~~R~aa~NiIPt~-----tGaa- 212 (331)
T PRK15425 151 TTNCLAPLAKVINDNFGIIEGLMTTVHATTAT-Q-----------KTVDGPSHKDWRGGRGASQNIIPSS-----TGAA- 212 (331)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEEEEEEeccCc-c-----------ccccCCCCcccccCcchhhceeccc-----CCch-
Confidence 99999999999999999999999999999998 5 2345554556689999999999998 5555
Q ss_pred HHHhHHHHHHHhcCCCCcc
Q 023678 252 EEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 252 eE~k~~~E~~kil~~~~~~ 270 (279)
+|++||| |+|.
T Consensus 213 ------~av~kIl--P~L~ 223 (331)
T PRK15425 213 ------KAVGKVL--PELN 223 (331)
T ss_pred ------HHHHhhc--cccC
Confidence 7999999 6666
No 25
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=99.98 E-value=2.1e-31 Score=249.72 Aligned_cols=198 Identities=18% Similarity=0.217 Sum_probs=156.8
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------------CC----------c-eeeeCCc-eeEEe---
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG----------K-QLSFQDK-AYTVE--- 92 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------------~G----------~-~~~~~~~-~~~v~--- 92 (279)
||||.| .|.+||.++|.+.++..+.++++++..... -| . .+.++++ .+.+.
T Consensus 1 ~i~ING-fGRIGr~~~r~~~~~~~~~~~ivaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~~l~i~g~~~i~v~~~~ 79 (327)
T TIGR01534 1 KVGING-FGRIGRLVLRAILEKQGLDLEVVAINDLTDLEYLAYLLKYDSVHGRFEGEVTADEDKGLVVNGKFVIVVASER 79 (327)
T ss_pred CEEEEc-cChHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHhcccCCCCCCCCcEEecCCceEEECCeEEEEEEecC
Confidence 699999 899999999998765223688888864211 11 1 2333445 55555
Q ss_pred ecCccCCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 93 ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 93 ~~d~~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
+++..+|. ++|+||+|+|...++++++.++++||++||+|++ |+++ +|++|||||++.++. ..+|||||+
T Consensus 80 dp~~~~w~~~gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap-~~d~-~plvV~gVN~~~~~~------~~~IISn~s 151 (327)
T TIGR01534 80 DPSDLPWKALGVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAP-SKGD-APTIVYGVNHDEYDP------EERIISNAS 151 (327)
T ss_pred CcccCchhhcCCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCC-CCCC-CCeecCCCCHHHhCC------CCCEEecCC
Confidence 44445687 8999999999999999999999999999999999 8876 899999999999873 467999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|+|++++++|+||++.|+|+++.|||+|++||.+ .+++|.+.+. .|+++++||+||++ +|++
T Consensus 152 CtTn~Lap~lk~L~~~fgI~~~~~TTiha~t~~q------------~lld~~~~d~-r~~r~~a~NiIP~~-----tg~a 213 (327)
T TIGR01534 152 CTTNCLAPLAKVLDEAFGIVSGLMTTVHSYTNDQ------------NLVDGPHKDL-RRARAAALNIIPTS-----TGAA 213 (327)
T ss_pred chHHHHHHHHHHHHHhcCeeEEEEEEEEeecCcc------------ccccCCCCCC-cCceEeEeeeeccC-----CChH
Confidence 9999999999999999999999999999999943 3344543333 68899999999998 3444
Q ss_pred HHHHhHHHHHHHhcCCCCccEEee
Q 023678 251 EEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 251 ~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+|++||| |+|.-.++
T Consensus 214 -------k~~~kvl--P~L~gkv~ 228 (327)
T TIGR01534 214 -------KAIGKVL--PELAGKLT 228 (327)
T ss_pred -------HHHhhcc--ccCCCeEE
Confidence 6788888 66663344
No 26
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.97 E-value=1.3e-30 Score=245.45 Aligned_cols=200 Identities=18% Similarity=0.214 Sum_probs=158.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--------------CC------------ceeeeCCceeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------------AG------------KQLSFQDKAYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--------------~G------------~~~~~~~~~~~v~ 92 (279)
++||||+| .|++|+..+|.+.++ |.++++++.+... -| +.+.++++.+.+.
T Consensus 5 ~lrVaI~G-~GrIGr~~~r~~~~~--~~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~l~~~g~~i~v~ 81 (338)
T PLN02358 5 KIRIGING-FGRIGRLVARVVLQR--DDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVF 81 (338)
T ss_pred ceEEEEEe-ecHHHHHHHHHHhhC--CCcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCEEEECCEEEEEE
Confidence 58999999 799999999998877 8999999875321 11 1122234455555
Q ss_pred ecC---ccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEE
Q 023678 93 ELT---EDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIA 167 (279)
Q Consensus 93 ~~d---~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVa 167 (279)
..+ ..+| .++|+||+|+|...++++++.++++||++||+|+. .+++|++|||||++.+.. +.+|||
T Consensus 82 ~~~~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap---~~dvp~iV~gVN~~~~~~------~~~IIS 152 (338)
T PLN02358 82 GIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAP---SKDAPMFVVGVNEHEYKS------DLDIVS 152 (338)
T ss_pred EcCCcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCC---CCCCCeEecCcCHHHhCC------CCCEEE
Confidence 443 2346 58999999999999999999999999999999955 467899999999999874 468999
Q ss_pred CCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccC
Q 023678 168 NPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247 (279)
Q Consensus 168 nPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~ 247 (279)
||+|+|++++++|+||++.|+|+++.|||||++||+++ ++.|.+.+...|+++++||+||++.+
T Consensus 153 nasCTTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~q~------------l~d~~~~~d~r~~ra~a~NiIP~~tG---- 216 (338)
T PLN02358 153 NASCTTNCLAPLAKVINDRFGIVEGLMTTVHSITATQK------------TVDGPSMKDWRGGRAASFNIIPSSTG---- 216 (338)
T ss_pred CCCchHHHHHHHHHHHHHhcCeeEEEEEEEEeecCccc------------ccCCCCCccccCccccccccccCCcc----
Confidence 99999999999999999999999999999999999953 22343334456899999999999844
Q ss_pred CChHHHHhHHHHHHHhcCCCCccEEee
Q 023678 248 GYNEEEMKMVKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 248 g~t~eE~k~~~E~~kil~~~~~~v~~~ 274 (279)
+ .+|++|||...+.+++.+
T Consensus 217 -a-------aka~~kIlP~l~gkl~g~ 235 (338)
T PLN02358 217 -A-------AKAVGKVLPSLNGKLTGM 235 (338)
T ss_pred -h-------hhhhhhccccCCCcEEEE
Confidence 3 468999995443335443
No 27
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.97 E-value=2.7e-31 Score=249.49 Aligned_cols=190 Identities=17% Similarity=0.232 Sum_probs=150.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CC-------------Cc---eee-------eCCceeEEe-ec
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SA-------------GK---QLS-------FQDKAYTVE-EL 94 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~-------------G~---~~~-------~~~~~~~v~-~~ 94 (279)
+||||.| .|.+||.++|.+.++ +.++++++.... +. |+ .+. ..++.+.+. +-
T Consensus 3 ~ki~ING-fGRIGr~v~r~~~~~--~~~~vvaiNd~~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~~~~~~ 79 (337)
T PTZ00023 3 VKLGING-FGRIGRLVFRAALER--EDVEVVAINDPFMTLDYMCYLLKYDSVHGSLPAEVSVTDGFLMIGSKKVHVFFEK 79 (337)
T ss_pred eEEEEEC-cChHHHHHHHHHHhc--CCeEEEEecCCCCChHHhhhhheeecCCCCCCCcEEecCCEEEECCeEEEEEeCC
Confidence 6999999 899999999998876 789999886421 11 11 111 122334432 22
Q ss_pred Ccc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
++. .|. ++|+||+|+|...++++++.++++||++||+|+ ++++++|++|||||++.+.. +.+|||||+
T Consensus 80 dp~~lpW~~~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSa--p~~~~vp~vV~gVN~~~~~~------~~~IISnas 151 (337)
T PTZ00023 80 DPAAIPWGKNGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSA--PPKDDTPIYVMGVNHTQYDK------SQRIVSNAS 151 (337)
T ss_pred ChhhCCccccCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCC--CCCCCCCeEEcccCHHHhCC------CCCEEECCc
Confidence 333 354 899999999999999999999999999999999 47778899999999999874 467999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCcc--ccccccccccccCCCCcccCC
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCK--IFSQQYAFNLFSHNAPVLENG 248 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~--~f~~~iafN~iP~i~~~~~~g 248 (279)
|+|++++++|+||+++|+|+++.+||||++| .+|+ +++|.+.+.+ .|+++++||+||++ +|
T Consensus 152 CTTn~Lap~lk~L~~~fgI~~~~~TT~ha~T----------~~Q~--lld~~~~~~kd~r~~r~~a~NiIP~~-----tG 214 (337)
T PTZ00023 152 CTTNCLAPLAKVVNDKFGIVEGLMTTVHAST----------ANQL--TVDGPSKGGKDWRAGRCAGVNIIPAS-----TG 214 (337)
T ss_pred cHHHHHHHHHHHHHHhcCeeEEEEEEEEecC----------CCce--ecCCcCcccCCCcccceeeccccccC-----CC
Confidence 9999999999999999999999999999999 2333 4456544334 67899999999998 56
Q ss_pred ChHHHHhHHHHHHHhc
Q 023678 249 YNEEEMKMVKETRKIW 264 (279)
Q Consensus 249 ~t~eE~k~~~E~~kil 264 (279)
+++ |++|+|
T Consensus 215 aak-------av~kVl 223 (337)
T PTZ00023 215 AAK-------AVGKVI 223 (337)
T ss_pred cch-------hhhhee
Confidence 776 566666
No 28
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=99.97 E-value=3.2e-30 Score=247.29 Aligned_cols=192 Identities=17% Similarity=0.264 Sum_probs=154.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--------------Cc-----------eeeeCCceeEEe-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------------GK-----------QLSFQDKAYTVE- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--------------G~-----------~~~~~~~~~~v~- 92 (279)
|+||+|+| .|.+||.++|.+.++ +.++++++...... |+ .+.++++.+.+.
T Consensus 85 ~~kvgInG-FGRIGR~v~R~~~~~--~~i~vvaINdp~~~~~~~ayllkyDS~hG~f~~~v~~~~~~~l~~~G~~I~V~~ 161 (421)
T PLN02272 85 KTKIGING-FGRIGRLVLRIATSR--DDIEVVAVNDPFIDAKYMAYMFKYDSTHGNFKGTINVVDDSTLEINGKQIKVTS 161 (421)
T ss_pred ceEEEEEC-cCHHHHHHHHHHhhc--CCcEEEEecCCCCCHHHHHHHhhhccCCCCCCCcEEEccCCEEEECCEEEEEEe
Confidence 36999999 899999999998765 67888887653210 11 122234556665
Q ss_pred --ecCccCCC--CCcEEEecCCCchhhhhHHHHHhCCC--EEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEE
Q 023678 93 --ELTEDSFD--GVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI 166 (279)
Q Consensus 93 --~~d~~~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~--~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iV 166 (279)
+++..+|. ++|+||+|+|...++++++.++++|| +|||+++ +|+|++|||||++.++. +.+||
T Consensus 162 ~~dp~~~~w~~~gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~-----~dvPlvV~gVN~~~l~~------~~~II 230 (421)
T PLN02272 162 KRDPAEIPWGDFGAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPS-----ADAPMFVVGVNEKTYKP------NMNIV 230 (421)
T ss_pred cCCcccCcccccCCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCC-----CCCCeEEeccCHHHhCC------CCCee
Confidence 34445676 89999999999999999999999999 8999883 46799999999999974 46899
Q ss_pred ECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCccc
Q 023678 167 ANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLE 246 (279)
Q Consensus 167 anPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~ 246 (279)
|||+|+|++++++|+||++.|+|+++.+||||++|| ++.+++|...+...|+++++||+||++
T Consensus 231 SnaSCTTn~Lap~lk~L~~~fGI~~g~mTTvha~T~------------tQ~llD~~~~~d~r~~R~aa~NIIPt~----- 293 (421)
T PLN02272 231 SNASCTTNCLAPLAKVVHEEFGILEGLMTTVHATTA------------TQKTVDGPSMKDWRGGRGASQNIIPSS----- 293 (421)
T ss_pred eCCCcHHHHHHHHHHHHHHhCCeEEEEEEEEEeccC------------ccccccCccccccccCCCcccccccCC-----
Confidence 999999999999999999999999999999999999 334455554455678999999999998
Q ss_pred CCChHHHHhHHHHHHHhcCCCCcc
Q 023678 247 NGYNEEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 247 ~g~t~eE~k~~~E~~kil~~~~~~ 270 (279)
+|+++ |++||| |+|.
T Consensus 294 tGaak-------av~kVL--P~L~ 308 (421)
T PLN02272 294 TGAAK-------AVGKVL--PELN 308 (421)
T ss_pred Cccch-------hhhhcc--cccC
Confidence 55655 888998 6665
No 29
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.96 E-value=4.5e-29 Score=234.38 Aligned_cols=198 Identities=17% Similarity=0.238 Sum_probs=155.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc----------eeeeCCceeEEee-c
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK----------QLSFQDKAYTVEE-L 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~----------~~~~~~~~~~v~~-~ 94 (279)
|+||||.| .|.+||.++|.+.++..+.++++++...... |+ .+.++++.+.+.. .
T Consensus 1 ~~ki~ING-fGRIGR~~~R~~~~~~~~~~~vvaind~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~I~v~~~~ 79 (337)
T PRK07403 1 MIRVAING-FGRIGRNFLRCWLGRENSQLELVAINDTSDPRTNAHLLKYDSMLGKLNADISADENSITVNGKTIKCVSDR 79 (337)
T ss_pred CeEEEEEc-cChHHHHHHHHHHhccCCCeEEEEecCCCCHHHHHHHHhhccCCCCCCCcEEEcCCEEEECCEEEEEEEcC
Confidence 57999999 8999999999977653357888888642211 11 1122345555543 4
Q ss_pred Ccc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
+++ +|. ++|+||+|+|...++++++.++++||++||+|+. |.++|+|++||+||++.+.. . ..+|||||+
T Consensus 80 dp~~~~W~~~gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~d~p~vV~gVN~~~~~~-~----~~~IISnas 153 (337)
T PRK07403 80 NPLNLPWKEWGIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP-GKGEDIGTYVVGVNHHEYDH-E----DHNIISNAS 153 (337)
T ss_pred CcccCChhhcCCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC-CCCCCCceEecccCHHHhcc-C----CCCEEECCc
Confidence 433 466 8999999999999999999999999999999996 88888899999999999863 1 367999999
Q ss_pred ChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCCh
Q 023678 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYN 250 (279)
Q Consensus 171 C~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t 250 (279)
|+|++++++|+||+++|+|+++.+||+|++|+.+ +.++...... -+++..++|+||... |++
T Consensus 154 CTTn~Lap~lkvL~~~fgI~~~~mTTiha~T~~q-~~~D~~~~d~------------r~~raaa~NiIPt~t-----Gaa 215 (337)
T PRK07403 154 CTTNCLAPIAKVLHDNFGIIKGTMTTTHSYTGDQ-RILDASHRDL------------RRARAAAVNIVPTST-----GAA 215 (337)
T ss_pred HHHHHHHHHHHHHHHhcCeeEEEEEEEeeecCCc-cccccccccc------------ccccccccccccCCc-----chh
Confidence 9999999999999999999999999999999999 5666543221 246678999999875 677
Q ss_pred HHHHhHHHHHH
Q 023678 251 EEEMKMVKETR 261 (279)
Q Consensus 251 ~eE~k~~~E~~ 261 (279)
+++.+..-|+.
T Consensus 216 kav~~vlP~L~ 226 (337)
T PRK07403 216 KAVALVIPELK 226 (337)
T ss_pred hhhhhcCcccC
Confidence 77765444443
No 30
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=99.96 E-value=3.4e-28 Score=228.74 Aligned_cols=189 Identities=19% Similarity=0.240 Sum_probs=153.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------------CC----------ceeeeCCceeEEe---e
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG----------KQLSFQDKAYTVE---E 93 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------------~G----------~~~~~~~~~~~v~---~ 93 (279)
+||+|.| .|.+||.++|.+.++ +.++++++....+ -| ..+.++++.+.+. +
T Consensus 3 ~ki~ING-fGRIGR~~~r~~~~~--~~~~vvaINd~~~~~~~ayll~yDS~hG~~~~~v~~~~~~l~v~g~~I~v~~~~d 79 (343)
T PRK07729 3 TKVAING-FGRIGRMVFRKAIKE--SAFEIVAINASYPSETLAHLIKYDTVHGKFDGTVEAFEDHLLVDGKKIRLLNNRD 79 (343)
T ss_pred eEEEEEC-cChHHHHHHHHHhhc--CCcEEEEecCCCCHHHHHHHhhhccCCCCCCCcEEecCCEEEECCEEEEEEEcCC
Confidence 6999999 899999999998776 7899998864221 01 1122234455554 3
Q ss_pred cCccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 94 LTEDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 94 ~d~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
++..+| .++|+||+|+|...++++++.++++||++||+|+. |.++++|+ |+|||++.+.. . ..+|||||+|
T Consensus 80 p~~~~W~~~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap-~~d~d~~l-V~gVN~~~~~~-~----~~~IISnaSC 152 (343)
T PRK07729 80 PKELPWTDLGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP-GKNEDVTI-VVGVNEDQLDI-E----KHTIISNASC 152 (343)
T ss_pred hhhCcccccCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC-CCCCCCcE-EecccHHHhcc-C----CCCEEECCch
Confidence 333457 48999999999999999999999999999999966 88878887 77999999863 1 3679999999
Q ss_pred hHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccc------cccccccccCCCC
Q 023678 172 STIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS------QQYAFNLFSHNAP 243 (279)
Q Consensus 172 ~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~------~~iafN~iP~i~~ 243 (279)
+|++++++|+||++.|+|+++.+||+|++||. .+.++++.+++++ ++....+++| +++. |++|++++
T Consensus 153 TTn~Lap~lk~L~~~fgI~~~~mTTiha~T~~-Q~~~D~~~~d~rr---~R~a~~niiPtstgaa~ai~-~viP~l~g 225 (343)
T PRK07729 153 TTNCLAPVVKVLDEQFGIENGLMTTVHAYTND-QKNIDNPHKDLRR---ARACGQSIIPTTTGAAKALA-KVLPHLNG 225 (343)
T ss_pred HHHHHHHHHHHHHHhcCeeEEEEEEEecccCc-ccccccchhhhhc---ccccccceecCCCcchhhHH-HhccccCC
Confidence 99999999999999999999999999999994 8889988877663 4555556677 7788 99999986
No 31
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=99.95 E-value=6.6e-29 Score=220.95 Aligned_cols=218 Identities=19% Similarity=0.286 Sum_probs=157.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeecCc------cCCCCCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELTE------DSFDGVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d~------~~~~~~DvVf~a~ 109 (279)
.+..||+++||.||+|.+|++++..| |++++..+.||+-+|+++.. ...++...++.. +.-..+|...+++
T Consensus 17 ~k~~rv~LlGArGYTGknlv~Lin~H--Pylevthvssrel~Gqkl~~ytk~eiqy~~lst~D~~klee~~avd~wvmaL 94 (340)
T KOG4354|consen 17 EKDIRVGLLGARGYTGKNLVRLINNH--PYLEVTHVSSRELAGQKLEVYTKLEIQYADLSTVDAVKLEEPHAVDHWVMAL 94 (340)
T ss_pred CCCceEEEEeccccchhhHHHHhcCC--CceEEEeeehhhhcCCcccCcchhheeecccchhhHHHhhcCCceeeeeeec
Confidence 45689999999999999999999888 99999999999999998762 222222223221 1123578999999
Q ss_pred CCchhhhhHHHHHhC-CC-EEEEcCCCCCCCC--CCceeeccCC-HHhhhccccCCCCCcEEECCCChHHHHHHhhhchh
Q 023678 110 GGSISKKFGPIAVEK-GS-IVVDNSSAFRMVE--NVPLVIPEVN-PEAMSGIKVGMGKGALIANPNCSTIICLMAATPLH 184 (279)
Q Consensus 110 g~~~s~~~~~~~~~a-G~-~VIDlS~~~R~~~--~vplvvPevN-~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~ 184 (279)
|..+.+.++...... |. ++||+|++||+.+ +|.|++||+| +++|+ ++++|||||||+|...+.|-||.
T Consensus 95 Pn~vckpfv~~~~s~~gks~iidlsad~rf~p~~~w~YGLpElndRe~i~-------na~~iaNPGCYaTgsQl~l~Pll 167 (340)
T KOG4354|consen 95 PNQVCKPFVSLTESSDGKSRIIDLSADWRFQPHKEWVYGLPELNDREDIK-------NARLIANPGCYATGSQLPLVPLL 167 (340)
T ss_pred chhhHHHHHHHHhhcCCceeeeecchhhcCCcchheeecCcccccHHHHh-------hhhhccCCCcccccCcccchHHH
Confidence 999999998877543 33 6999999999987 8999999999 88888 68999999999999999999999
Q ss_pred hhcCccEEEEEEeecccccChhhH-----HHHHHHHHHHh-c----CCCCCc-cccccccccccccCCCCcccCCChHHH
Q 023678 185 RRAKVTRMVVSTYQAASGAGAAAM-----EELELQTREVL-E----GKPPTC-KIFSQQYAFNLFSHNAPVLENGYNEEE 253 (279)
Q Consensus 185 ~~~~i~~v~vtt~q~vSGaG~~~~-----~El~~qt~~l~-~----g~~~~~-~~f~~~iafN~iP~i~~~~~~g~t~eE 253 (279)
+...++ -.|..++|+||||+++. .||.+.+.-+. . -+.++. ..-+.-|.+++.||+.++.-+.|...-
T Consensus 168 k~i~g~-p~ifgvSGySGAGtkpspkNd~~~l~nnlipY~ltdHiHerEIs~r~k~~VaF~PHv~qwfqGi~lTi~vpmk 246 (340)
T KOG4354|consen 168 KAILGK-PEIFGVSGYSGAGTKPSPKNDYSELANNLIPYGLTDHIHEREISQRSKVTVAFTPHVMQWFQGIQLTIYVPMK 246 (340)
T ss_pred HHhcCC-cceeeeccccCCCCCCCCccCHHHHhcCCccccccccchhHhHHHhhCCceeechhHHHHhhhceEEEEEeec
Confidence 976554 33789999999999884 22222111100 0 000000 011224678999999999777664332
Q ss_pred H-hHHHHHHHhc
Q 023678 254 M-KMVKETRKIW 264 (279)
Q Consensus 254 ~-k~~~E~~kil 264 (279)
. -..+|+|++|
T Consensus 247 ksv~~~elr~ly 258 (340)
T KOG4354|consen 247 KSVRTEELRQLY 258 (340)
T ss_pred CcccHHHHHHHH
Confidence 2 2234555554
No 32
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=99.95 E-value=1.9e-28 Score=198.88 Aligned_cols=112 Identities=35% Similarity=0.539 Sum_probs=99.4
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCC------ceeEEeecCccCCCCCcEEEecCCCch
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQD------KAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~------~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
||+|+|||||+|++|+++|.+| |.+++..+.+++. .|+.+.+.. .++.+.+.+.+.+.++|+||+|+|++.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h--p~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~ 78 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH--PDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA 78 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--STEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH
T ss_pred CEEEECCCCHHHHHHHHHHhcC--CCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH
Confidence 7999999999999999999997 9999998887776 999887643 356676766666789999999999999
Q ss_pred hhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 114 SKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
+++++++++++|++|||+|++||+++++||++||||+++|+
T Consensus 79 ~~~~~~~~~~~g~~ViD~s~~~R~~~~~~~~~pevn~~~i~ 119 (121)
T PF01118_consen 79 SKELAPKLLKAGIKVIDLSGDFRLDDDVPYGLPEVNREQIK 119 (121)
T ss_dssp HHHHHHHHHHTTSEEEESSSTTTTSTTSEEE-HHHHHHHHH
T ss_pred HHHHHHHHhhCCcEEEeCCHHHhCCCCCCEEeCCcCHHHHc
Confidence 99999999999999999999999999999999999999987
No 33
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.94 E-value=1.3e-25 Score=212.38 Aligned_cols=153 Identities=19% Similarity=0.236 Sum_probs=124.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---------Cceee---------eCCceeEEeecCccCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---------GKQLS---------FQDKAYTVEELTEDSFD 100 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---------G~~~~---------~~~~~~~v~~~d~~~~~ 100 (279)
|+||||+|+ |.+|+.+++.+.++ |+++++.+..++.. |..+. +.+..+.+.+...+.+.
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~--~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~ 77 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQ--PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLE 77 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcC--CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhc
Confidence 479999998 99999999999887 99999998764321 11100 11112333322123346
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhh
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL 180 (279)
++|+||+|+|.+.+.++++.++++|++|||+++.++..+++++ +||+|.+.+.. ..+|+||||+|++++++|
T Consensus 78 ~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~~~~~~~~~~~-v~~vN~~~~~~-------~~~v~~~sCtT~~l~~~l 149 (341)
T PRK04207 78 KADIVVDATPGGVGAKNKELYEKAGVKAIFQGGEKAEVAGVSF-NALANYEEALG-------KDYVRVVSCNTTGLCRTL 149 (341)
T ss_pred cCCEEEECCCchhhHHHHHHHHHCCCEEEEcCCCCCCCCCCcE-EeeECHHHhCC-------CCcEEccChHHHHHHHHH
Confidence 8999999999999999999999999999999999887777777 99999998862 348999999999999999
Q ss_pred hchhhhcCccEEEEEEeecccc
Q 023678 181 TPLHRRAKVTRMVVSTYQAASG 202 (279)
Q Consensus 181 ~PL~~~~~i~~v~vtt~q~vSG 202 (279)
+||++.|+|+++.+||+|++|+
T Consensus 150 ~~L~~~fgI~~~~vTtv~a~td 171 (341)
T PRK04207 150 CALDRAFGVKKVRATLVRRAAD 171 (341)
T ss_pred HHHHHhcCceEEEEEEEEcCCC
Confidence 9999999999999999999885
No 34
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=99.93 E-value=1.9e-25 Score=207.06 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=137.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee-CCceeEEeecC----ccCCCCCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF-QDKAYTVEELT----EDSFDGVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~-~~~~~~v~~~d----~~~~~~~DvVf~a~ 109 (279)
|+++|||||| +|.+|+.++..+.+. +.++++++++.+. .|..... .+......+.+ ..+|.++|+||+|+
T Consensus 2 m~klrVAIIG-tG~IGt~hm~~l~~~--~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT 78 (302)
T PRK08300 2 MSKLKVAIIG-SGNIGTDLMIKILRS--EHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDAT 78 (302)
T ss_pred CCCCeEEEEc-CcHHHHHHHHHHhcC--CCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECC
Confidence 4568999999 999999999888876 8999999987643 2321111 11111112222 23467899999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCc
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKV 189 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i 189 (279)
++..+++++++++++|+.|||++++|+ +||+|||||.+++...+ +.++|+||||.+++++++|+|+.+ ..+
T Consensus 79 ~a~~H~e~a~~a~eaGk~VID~sPA~~----~PlvVP~VN~~~~~~~~----~~~iia~p~~ati~~v~Al~~v~~-~~~ 149 (302)
T PRK08300 79 SAGAHVRHAAKLREAGIRAIDLTPAAI----GPYCVPAVNLDEHLDAP----NVNMVTCGGQATIPIVAAVSRVAP-VHY 149 (302)
T ss_pred CHHHHHHHHHHHHHcCCeEEECCcccc----CCcccCcCCHHHHhccc----CCCEEECccHHHHHHHHHhcccCc-Cce
Confidence 999999999999999999999999994 69999999999887532 579999999999999999999654 466
Q ss_pred cEEEEEEeeccc-ccC-hhhHHHHHHHHHHHh
Q 023678 190 TRMVVSTYQAAS-GAG-AAAMEELELQTREVL 219 (279)
Q Consensus 190 ~~v~vtt~q~vS-GaG-~~~~~El~~qt~~l~ 219 (279)
.+|+ +||++.| |.| |.+++|+.+||+..+
T Consensus 150 ~eIv-at~~s~s~g~gtr~nidE~~~~t~~~~ 180 (302)
T PRK08300 150 AEIV-ASIASKSAGPGTRANIDEFTETTSRAI 180 (302)
T ss_pred eeee-eeehhhccCCcccccHHHHHHHHHHHH
Confidence 6776 9999999 999 999999999999875
No 35
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=99.93 E-value=8e-25 Score=210.67 Aligned_cols=158 Identities=18% Similarity=0.224 Sum_probs=129.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-------------CC-----------ceeeeCCceeEEeec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-------------AG-----------KQLSFQDKAYTVEEL 94 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-------------~G-----------~~~~~~~~~~~v~~~ 94 (279)
++||+|.| .|.+||.++|.+.++..+.++++++..... -| +.+.++++.+.+.+.
T Consensus 75 ~ikVgING-FGRIGR~vlR~~~~~~~~~ievVaINd~~~~~~~ayLlkyDS~hG~f~~~v~~~~~~~L~v~Gk~I~V~~~ 153 (442)
T PLN02237 75 KLKVAING-FGRIGRNFLRCWHGRKDSPLDVVVVNDSGGVKNASHLLKYDSMLGTFKADVKIVDDETISVDGKPIKVVSN 153 (442)
T ss_pred eEEEEEEC-CChHHHHHHHHHHHccCCCeEEEEECCCCCHHHHHHHHccccCCCCcCCceEECCCCEEEECCEEEEEEEc
Confidence 37999999 899999999997654336789988864211 01 112223455666554
Q ss_pred -C--ccCC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 95 -T--EDSF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 95 -d--~~~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
+ ..+| .++|+||+|+|...++++++.++++||++||+| ++|.++++|++|||||++.+... ..+|||||
T Consensus 154 ~dp~~l~W~~~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iS-AP~~d~dvptvV~GVN~~~~~~~-----~~~IISna 227 (442)
T PLN02237 154 RDPLKLPWAELGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIIT-APAKGADIPTYVVGVNEDDYDHE-----VANIVSNA 227 (442)
T ss_pred CCchhCChhhcCCCEEEEccChhhhHHHHHHHHhCCCEEEEEC-CCCCCCCCceEecccCHHHhCcC-----CCCEEECC
Confidence 4 3357 589999999999999999999999999999999 67888788999999999998740 26899999
Q ss_pred CChHHHHHHhhhchhhhcCccEEEEEEeeccccc
Q 023678 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 170 gC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGa 203 (279)
+|+|++++++|+||+++|+|+++.+||+|++||-
T Consensus 228 SCTTNcLAPvlkvL~d~fGI~~g~mTTvHs~T~d 261 (442)
T PLN02237 228 SCTTNCLAPFVKVLDEEFGIVKGTMTTTHSYTGD 261 (442)
T ss_pred chHHHHHHHHHHHHHHhcCeeEEEEEEEEeccCC
Confidence 9999999999999999999999999999999983
No 36
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=99.91 E-value=3e-23 Score=195.31 Aligned_cols=186 Identities=19% Similarity=0.175 Sum_probs=136.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-C-------------CCc----eeee-------CC-ceeEEe-
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-S-------------AGK----QLSF-------QD-KAYTVE- 92 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s-------------~G~----~~~~-------~~-~~~~v~- 92 (279)
+||||.| .|.+||.++|.+.++ +.++++++...- + -|+ .+.. .+ +.+.+.
T Consensus 3 ~kv~ING-fGRIGR~v~R~~~~~--~~~~ivaiNd~~~~~~~~ayll~yDS~hG~~~~~~v~~~~~~l~i~g~~~i~~~~ 79 (342)
T PTZ00353 3 ITVGING-FGPVGKAVLFASLTD--PLVTVVAVNDASVSIAYIAYVLEQESPLSAPDGASIRVVGEQIVLNGTQKIRVSA 79 (342)
T ss_pred eEEEEEC-CChHHHHHHHHHHhc--CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCeEEEcCCEEecCCCeEEEEEe
Confidence 6999999 899999999998777 889999986521 1 121 1211 22 344443
Q ss_pred ecC--ccCCC--CCcEEEecCCCchhhhhHHHHHh---CCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcE
Q 023678 93 ELT--EDSFD--GVDIALFSAGGSISKKFGPIAVE---KGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGAL 165 (279)
Q Consensus 93 ~~d--~~~~~--~~DvVf~a~g~~~s~~~~~~~~~---aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~i 165 (279)
+-+ ..+|. ++|+||+|+|...+++-+..+++ +|+.|+|.| +++|++||+||++.++. ..+|
T Consensus 80 ~~dp~~~~w~~~gvDiVie~TG~f~~~~~a~~hl~~Gakkviisaps------~d~p~vV~gVN~~~~~~------~~~I 147 (342)
T PTZ00353 80 KHDLVEIAWRDYGVQYVVECTGLYSTRSRCWGHVTGGAKGVFVAGQS------ADAPTVMAGSNDERLSA------SLPV 147 (342)
T ss_pred cCCcccCcccccCCCEEEEcccccccHhhhhhhhhcCCCcEEEeCCC------CCCCeEEecCChHHcCC------CCCE
Confidence 222 34577 89999999999855554444444 455677765 34799999999999873 4679
Q ss_pred EECCCChHHHHHHhhhchhhhcCccEEEEEEe---ecccccCh-hhHHHHHHHHHHHhcCCCCCcccccccccc-ccccC
Q 023678 166 IANPNCSTIICLMAATPLHRRAKVTRMVVSTY---QAASGAGA-AAMEELELQTREVLEGKPPTCKIFSQQYAF-NLFSH 240 (279)
Q Consensus 166 VanPgC~tt~l~laL~PL~~~~~i~~v~vtt~---q~vSGaG~-~~~~El~~qt~~l~~g~~~~~~~f~~~iaf-N~iP~ 240 (279)
||||+|+|++++++++||+++|+|+++.+||+ |+.|++|. .++.|+.++.+ .|| |++|.
T Consensus 148 ISnaSCTTn~LapvlkvL~~~fGI~~g~mTTvHs~q~~~~~d~~~~~~~d~rr~R----------------aA~~nIiPt 211 (342)
T PTZ00353 148 CCAGAPIAVALAPVIRALHEVYGVEECSYTAIHGMQPQEPIAARSKNSQDWRQTR----------------VAIDAIAPY 211 (342)
T ss_pred EECCCHHHHHHHHHHHHHHHhcCeeEEEeeeeeecceeecCCCcccccccccccc----------------hHHhCCccc
Confidence 99999999999999999999999999999999 88899987 67777766533 333 45553
Q ss_pred CCCcccCCChHHHHhHHHHHHHhcCCCCcc
Q 023678 241 NAPVLENGYNEEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 241 i~~~~~~g~t~eE~k~~~E~~kil~~~~~~ 270 (279)
. ..++ +|++||| |+|.
T Consensus 212 s----tgaa--------kav~kVl--P~L~ 227 (342)
T PTZ00353 212 R----DNGA--------ETVCKLL--PHLV 227 (342)
T ss_pred C----Ccch--------hhhhhhc--cccC
Confidence 3 2232 7999999 5666
No 37
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=99.86 E-value=9.5e-21 Score=183.20 Aligned_cols=196 Identities=11% Similarity=0.184 Sum_probs=149.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC--CCceEEEEEeecCC-CCc-------------------eeee---------CCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKRS-AGK-------------------QLSF---------QDK 87 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~--~p~~~l~~l~s~~s-~G~-------------------~~~~---------~~~ 87 (279)
..||+|.| .|.+||.++|.|.++. .+.++++++..|.. .+. .+.. .+.
T Consensus 127 ~~~V~InG-FGRIGR~v~R~~~~~~~~~~~l~lvAIn~~~nd~~d~~~~ayLLkyDSvhG~f~~~v~~~~~~~~liing~ 205 (477)
T PRK08289 127 PRDVVLYG-FGRIGRLLARLLIEKTGGGNGLRLRAIVVRKGSEGDLEKRASLLRRDSVHGPFNGTITVDEENNAIIANGN 205 (477)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhccCCCCCeEEEEEecCCCCCCCHHHHHHHhhhhcCCCCCCCceEeecCCCEEEECCE
Confidence 57999999 9999999999987652 24688988853211 110 0110 122
Q ss_pred eeEEe-ecCcc--CCC--CCc--EEEecCCCchhhhhHHHHHh-CCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccC
Q 023678 88 AYTVE-ELTED--SFD--GVD--IALFSAGGSISKKFGPIAVE-KGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVG 159 (279)
Q Consensus 88 ~~~v~-~~d~~--~~~--~~D--vVf~a~g~~~s~~~~~~~~~-aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~ 159 (279)
.+.+. +-+++ +|. ++| +|+.|+|....++-+..+++ +|++-|=+|++. ++++|++||+||++.+..
T Consensus 206 ~I~v~~~~dP~~i~W~~~Gvd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~--k~d~p~iV~GVN~~~~~~---- 279 (477)
T PRK08289 206 YIQVIYANSPEEVDYTAYGINNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPG--KGDIKNIVHGVNHSDITD---- 279 (477)
T ss_pred EEEEEecCChHHCCchhcCCCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCC--CCCCCeEEcccCHHHhCC----
Confidence 23332 22233 353 799 99999999999999999998 899644488884 456799999999999863
Q ss_pred CCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCcccccccccccccc
Q 023678 160 MGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFS 239 (279)
Q Consensus 160 ~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP 239 (279)
..+|||||+|+|+|++++|+||++.|+|++..++|+|++|+ |...++++..+. .++++.++|+||
T Consensus 280 --~~~IISnASCTTN~LaPvlKvL~d~fGI~~g~mTTvHa~T~-dQ~lvD~~hkd~------------RrgRaaa~NIIp 344 (477)
T PRK08289 280 --EDKIVSAASCTTNAITPVLKAVNDKYGIVNGHVETVHSYTN-DQNLIDNYHKGD------------RRGRSAPLNMVI 344 (477)
T ss_pred --CCCEEECCccHHHHHHHHHHHHHHhcCeeEEEEEEEecccC-ChHHhhhhhhcC------------cccceeeeeeEe
Confidence 46799999999999999999999999999999999999999 999999886432 356788999997
Q ss_pred CCCCcccCCChHHHHhHHHHHHHhcCCCCcc
Q 023678 240 HNAPVLENGYNEEEMKMVKETRKIWVSFKMN 270 (279)
Q Consensus 240 ~i~~~~~~g~t~eE~k~~~E~~kil~~~~~~ 270 (279)
- ++|.++ +++|+| |+|.
T Consensus 345 t-----sTGAAk-------Av~kVL--P~L~ 361 (477)
T PRK08289 345 T-----ETGAAK-------AVAKAL--PELA 361 (477)
T ss_pred c-----CCChhh-------hhhhcc--cccC
Confidence 4 455554 888888 4454
No 38
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=99.85 E-value=1.8e-20 Score=173.07 Aligned_cols=167 Identities=19% Similarity=0.235 Sum_probs=130.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceeee-CCceeEEeecCc-cCCCCCcEEEecCCCchhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF-QDKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~~-~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~ 115 (279)
+|||||| +|.+|+.++..+.+. +.+++..+.++... +..... .+......+.+. -.-.++|+||+|+|+..+.
T Consensus 2 lrVAIIG-~G~IG~~h~~~ll~~--~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~ 78 (285)
T TIGR03215 2 VKVAIIG-SGNIGTDLMYKLLRS--EHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA 78 (285)
T ss_pred cEEEEEe-CcHHHHHHHHHHHhC--CCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH
Confidence 7999999 599999997777665 78899988765332 211111 111222222221 0113689999999999999
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEE
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVS 195 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vt 195 (279)
+++.+++++|+.|||+++.+ .+||++|+||.+++.... +.++|+||||.++.++.+|+++++...+ .+++
T Consensus 79 e~a~~al~aGk~VIdekPa~----~~plvvp~VN~~~~~~~~----~~~iv~c~~~atip~~~al~r~~d~~~~--~iv~ 148 (285)
T TIGR03215 79 RHARLLAELGKIVIDLTPAA----IGPYVVPAVNLDEHLDAP----NVNMVTCGGQATIPIVAAISRVAPVHYA--EIVA 148 (285)
T ss_pred HHHHHHHHcCCEEEECCccc----cCCccCCCcCHHHHhcCc----CCCEEEcCcHHHHHHHHHHHHhhccccE--EEEE
Confidence 99999999999999999998 479999999998877532 5799999999999999999999987644 6788
Q ss_pred Eeeccc-cc-ChhhHHHHHHHHHHHh
Q 023678 196 TYQAAS-GA-GAAAMEELELQTREVL 219 (279)
Q Consensus 196 t~q~vS-Ga-G~~~~~El~~qt~~l~ 219 (279)
||++.| |+ ||.+++||.+||...+
T Consensus 149 ti~s~S~g~g~r~~idel~~~t~~~~ 174 (285)
T TIGR03215 149 SIASRSAGPGTRANIDEFTETTSRAL 174 (285)
T ss_pred EEEeeccCCCchhHHHHHHHHHHHHH
Confidence 899999 58 5999999999998854
No 39
>PF02774 Semialdhyde_dhC: Semialdehyde dehydrogenase, dimerisation domain; InterPro: IPR012280 This domain contains N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. It also contains the yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a dimerisation domain of semialdehyde dehydrogenase.; GO: 0003942 N-acetyl-gamma-glutamyl-phosphate reductase activity, 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0046983 protein dimerization activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YS4_B 2CVO_C 2HJS_A 2I3A_A 2NQT_A 2I3G_B 3Q0E_B 1MB4_A 3PZR_A 1MC4_A ....
Probab=99.81 E-value=6e-20 Score=159.55 Aligned_cols=94 Identities=40% Similarity=0.541 Sum_probs=89.1
Q ss_pred hhchhhh-cCccEEEEEEeecccccChhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCC--ChHHHHhH
Q 023678 180 ATPLHRR-AKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENG--YNEEEMKM 256 (279)
Q Consensus 180 L~PL~~~-~~i~~v~vtt~q~vSGaG~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g--~t~eE~k~ 256 (279)
|+||+++ +++++|+|+||||+|||||+|++||++|+..+++|++.+...|+.+++||++||++++...+ +++||+++
T Consensus 1 L~PL~~~l~~~~~v~v~t~qgvSGAG~~~~~eL~~q~~~~~~~~~~~~~~~~~~i~~N~~py~~~~~h~h~~e~~~el~~ 80 (184)
T PF02774_consen 1 LAPLHKALFGLERVIVDTYQGVSGAGRKGVEELAQQTASLLNGKPPSPGLFPSQIAFNLIPYIGGFEHRHEPEIEEELKM 80 (184)
T ss_dssp HHHHHHTHHHECEEEEEEEEEGGGGCHHHHHHHHHHHHHHHCSSTSTCSSTSSHHTTSEBSCSSTBTTTSHHHBHHHHHH
T ss_pred CcchhhCcCCCcEEEEEEeechhhccHhHHHHHHHhHHhhhccCCCCCCccchhhhcceeEccCCcccCchHHHHHHHHh
Confidence 7899997 88899999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhcCCCCccEEee
Q 023678 257 VKETRKIWVSFKMNFFVS 274 (279)
Q Consensus 257 ~~E~~kil~~~~~~v~~~ 274 (279)
..|.+|+++... .|++|
T Consensus 81 ~~~~~~~l~~~~-~v~~t 97 (184)
T PF02774_consen 81 IAETRKILGFPP-RVSFT 97 (184)
T ss_dssp HHHHHHHCTETT-EEEEE
T ss_pred hccccceeeccc-ccccc
Confidence 999999999877 66655
No 40
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=99.69 E-value=1.1e-16 Score=129.44 Aligned_cols=112 Identities=46% Similarity=0.644 Sum_probs=86.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee-cCCCCceeeeCCce---eEEeecCccCC--CCCcEEEecCCCchh
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS-KRSAGKQLSFQDKA---YTVEELTEDSF--DGVDIALFSAGGSIS 114 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s-~~s~G~~~~~~~~~---~~v~~~d~~~~--~~~DvVf~a~g~~~s 114 (279)
|++|+|++|++|+.+++.|.++ |.+++..+.+ +++.|+...+.+.. ..+.+.+.+.+ .++|+||+|++.+..
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~--~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~ 78 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH--PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVS 78 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC--CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHH
Confidence 6899999999999999999988 8888888844 44666655433221 11223333334 379999999999988
Q ss_pred hhhHH---HHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 115 KKFGP---IAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 115 ~~~~~---~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
.+.+. +.++.|+.|||+|+++|++++++|++||+|+++++
T Consensus 79 ~~~~~~~~~~~~~g~~viD~s~~~~~~~~~~~~~~~~n~~~~~ 121 (122)
T smart00859 79 KEIAPLLPKAAEAGVKVIDLSSAFRMDDDVPYGLPEVNPEAIK 121 (122)
T ss_pred HHHHHHHHhhhcCCCEEEECCccccCCCCceEEcCccCHHHhc
Confidence 88543 34579999999999999999999999999998775
No 41
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=99.68 E-value=1.3e-15 Score=143.97 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=119.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCC--CCceEEEEEeecC-CC-------------Cc---eee---------------
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRD--FPYRSIKMLASKR-SA-------------GK---QLS--------------- 83 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~--~p~~~l~~l~s~~-s~-------------G~---~~~--------------- 83 (279)
.++||||.| .|.+||.++|.+.+++ .+.++++++.... .. |+ .+.
T Consensus 2 m~ikVgING-FGRIGR~v~R~~~~~~~~~~~ievVAINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~~~~~~~~~l~ 80 (361)
T PTZ00434 2 APIKVGING-FGRIGRMVFQAICDQGLIGTEIDVVAVVDMSTNAEYFAYQMKYDTVHGRPKYTVETTKSSPSVKTDDVLV 80 (361)
T ss_pred CceEEEEEC-cChHHHHHHHHHHHcccCCCCeEEEEEeCCCCChhheeeeeeeecCCCCcCCceeecccccccccCCEEE
Confidence 457999999 8999999999987642 1578988887521 11 11 111
Q ss_pred eCCceeEE--eecCcc--CCC--CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccc
Q 023678 84 FQDKAYTV--EELTED--SFD--GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157 (279)
Q Consensus 84 ~~~~~~~v--~~~d~~--~~~--~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~ 157 (279)
..++.+.+ .+-|+. .|. ++|+|+.|+|...+++.+..++++|++-|=+|++. +++.+.+|.+||++.++..
T Consensus 81 ing~~I~~~~~~~dP~~ipW~~~gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~--~d~~~t~V~GVN~~~y~~~- 157 (361)
T PTZ00434 81 VNGHRIKCVKAQRNPADLPWGKLGVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPA--SGGAKTIVMGVNQHEYSPT- 157 (361)
T ss_pred ECCEEEEEEEecCChhhCchhhcCCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCC--CCCCceEEEcCChHHcCcc-
Confidence 12233443 233433 354 89999999999999999999999999644478874 3334779999999998620
Q ss_pred cCCCCCcEEECCCChHHHHHHhhhch-hhhcCccEEEEEEeecccc
Q 023678 158 VGMGKGALIANPNCSTIICLMAATPL-HRRAKVTRMVVSTYQAASG 202 (279)
Q Consensus 158 ~~~~~~~iVanPgC~tt~l~laL~PL-~~~~~i~~v~vtt~q~vSG 202 (279)
..+||||.+|+|+++++.++.| ++.|+|++..+||+|++++
T Consensus 158 ----~~~IiSnASCTTNcLAP~~kvL~~~~fGI~~g~mTTVHayT~ 199 (361)
T PTZ00434 158 ----EHHVVSNASCTTNCLAPIVHVLTKEGFGIETGLMTTIHSYTA 199 (361)
T ss_pred ----cCcEEECCChHHHhhHHHHHHhhcCCcceEEEEEEEEecccC
Confidence 2579999999999999999999 7999999999999999996
No 42
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=2.8e-15 Score=139.69 Aligned_cols=155 Identities=20% Similarity=0.229 Sum_probs=121.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecC------------C-CCc----------eeeeCCceeEEe-e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKR------------S-AGK----------QLSFQDKAYTVE-E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~------------s-~G~----------~~~~~~~~~~v~-~ 93 (279)
++||||.| .|.+||.++|.+.++ + +++++.+..-. + -|+ .+.+.+..+.+. .
T Consensus 1 ~ikV~ING-fGrIGR~v~ra~~~~--~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~~~v~g~~I~v~~~ 77 (335)
T COG0057 1 MIKVAING-FGRIGRLVARAALER--DGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDALVVNGKGIKVLAE 77 (335)
T ss_pred CcEEEEec-CcHHHHHHHHHHHhC--CCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCeEEECCceEEEEec
Confidence 47999999 899999999999988 6 79999886511 1 111 112233344443 2
Q ss_pred cCccC--CC--CCcEEEecCCCchhhhhHHHHHhC-CCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEEC
Q 023678 94 LTEDS--FD--GVDIALFSAGGSISKKFGPIAVEK-GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIAN 168 (279)
Q Consensus 94 ~d~~~--~~--~~DvVf~a~g~~~s~~~~~~~~~a-G~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVan 168 (279)
.+++. |. ++|+|+.|+|-..+++.+++++++ |++-|=.|++- .++++.++-.+|.+.+.. +..+|+|
T Consensus 78 ~~p~~l~w~d~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~--~~~~~~vv~gvn~~~~~~------~~~iVsn 149 (335)
T COG0057 78 RDPANLPWADLGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPG--KDDVATVVYGVNHNYYDA------GHTIVSN 149 (335)
T ss_pred CChHHCCccccCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCC--CCCccEEEEeccccccCC------CCcEEEE
Confidence 33332 43 589999999999999999999888 58655578875 334789999999988874 5789999
Q ss_pred CCChHHHHHHhhhchhhhcCccEEEEEEeecccccC
Q 023678 169 PNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAG 204 (279)
Q Consensus 169 PgC~tt~l~laL~PL~~~~~i~~v~vtt~q~vSGaG 204 (279)
.+|+|+|+++.+++|+++|+|+++.+||.+++++--
T Consensus 150 aSCTTNcLap~~kvl~d~fGI~~g~mTtVh~~T~dQ 185 (335)
T COG0057 150 ASCTTNCLAPVAKVLNDAFGIEKGLMTTVHAYTNDQ 185 (335)
T ss_pred ccchhhhhHHHHHHHHHhcCeeEEEEEEEEcccCCC
Confidence 999999999999999999999999999999998754
No 43
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=99.39 E-value=4.6e-12 Score=119.54 Aligned_cols=147 Identities=18% Similarity=0.192 Sum_probs=110.2
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---------Cceee--eCCceeEEee------cCc-cCCCCCc
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---------GKQLS--FQDKAYTVEE------LTE-DSFDGVD 103 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---------G~~~~--~~~~~~~v~~------~d~-~~~~~~D 103 (279)
|||+| .|.+|+.+++.+.++ |.++++++...... |.... +......+.+ -+. +.+.++|
T Consensus 1 VaInG-~GrIGr~varav~~~--~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vD 77 (333)
T TIGR01546 1 VGVNG-YGTIGKRVADAVTKQ--DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVD 77 (333)
T ss_pred CEEEC-CcHHHHHHHHHHhhC--CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCC
Confidence 68999 699999999998876 89999998763221 00000 0000111111 011 1246899
Q ss_pred EEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhch
Q 023678 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPL 183 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL 183 (279)
+|+.|+|.....+.++.+.+.|++.|=.|+... +...+.++.++|.+.+.. ..+|+|.+|+|++++..+++|
T Consensus 78 iVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~-~~~~~tfv~gvN~~~~~~-------~~~vs~aSCtTn~Lap~~~~L 149 (333)
T TIGR01546 78 IVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA-EVADVSFVAQANYEAALG-------KDYVRVVSCNTTGLVRTLNAI 149 (333)
T ss_pred EEEECCCCCCChhhHHHHHhCCcCEEEECCCCC-CCCCceEEeeeCHHHcCc-------CceEEecCchHhhHHHHHHHH
Confidence 999999999999999999999997666888743 111256899999998862 349999999999999999999
Q ss_pred hhhcCccEEEEEEeec
Q 023678 184 HRRAKVTRMVVSTYQA 199 (279)
Q Consensus 184 ~~~~~i~~v~vtt~q~ 199 (279)
++.|||+++.+||.+.
T Consensus 150 ~~~fGI~~~~~Ttvh~ 165 (333)
T TIGR01546 150 NDYSKVDKVRAVMVRR 165 (333)
T ss_pred HHhcCeEEEEEEEEee
Confidence 9999999999999995
No 44
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.30 E-value=3.2e-12 Score=112.28 Aligned_cols=169 Identities=21% Similarity=0.278 Sum_probs=120.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe--ecCCCCceeee-CCceeEEee----cCccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAGKQLSF-QDKAYTVEE----LTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~--s~~s~G~~~~~-~~~~~~v~~----~d~~~~~~~DvVf~a~g~ 111 (279)
+.||+|+| +|.+|..|+-.+++|+ ...+..+.. ...+.|..... -+....-+. +...+|.+.|+||.++..
T Consensus 4 k~kvaiig-sgni~tdlm~k~lr~g-~~le~~~mvgidp~sdglaraarlgv~tt~egv~~ll~~p~~~di~lvfdatsa 81 (310)
T COG4569 4 KRKVAIIG-SGNIGTDLMIKILRHG-QHLEMAVMVGIDPQSDGLARAARLGVATTHEGVIGLLNMPEFADIDLVFDATSA 81 (310)
T ss_pred cceEEEEc-cCcccHHHHHHHHhcC-CcccceeEEccCCCccHHHHHHhcCCcchhhHHHHHHhCCCCCCcceEEecccc
Confidence 47999999 8999999998888886 344555443 23444421111 011111111 223457789999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccE
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTR 191 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~ 191 (279)
+..++.+++++++|++.||++++- -.||++|-+|.++-.+.+ +.++|.|.|..++.++.+...+.+...- .
T Consensus 82 ~~h~~~a~~~ae~gi~~idltpaa----igp~vvp~~n~~eh~~a~----nvnmvtcggqatipiv~avsrvv~v~ya-e 152 (310)
T COG4569 82 GAHVKNAAALAEAGIRLIDLTPAA----IGPYVVPVVNLEEHVDAL----NVNMVTCGGQATIPIVAAVSRVVRVHYA-E 152 (310)
T ss_pred chhhcchHhHHhcCCceeecchhc----cCCeeccccchHHhcCCC----CcceEeecCcccchhhhhhhhheehhHH-H
Confidence 999999999999999999999874 469999999987644322 7899999999999999988765442211 2
Q ss_pred EEEEEeeccc-ccC-hhhHHHHHHHHHHHh
Q 023678 192 MVVSTYQAAS-GAG-AAAMEELELQTREVL 219 (279)
Q Consensus 192 v~vtt~q~vS-GaG-~~~~~El~~qt~~l~ 219 (279)
+ |.++.+.| |.| |..++|+.+.|++..
T Consensus 153 i-vasias~sagpgtranideftettsr~i 181 (310)
T COG4569 153 I-VASIASKSAGPGTRANIDEFTETTSRAI 181 (310)
T ss_pred H-HHHHhhccCCCCcccchHhhhhhhHHHH
Confidence 2 23334444 888 888999999998754
No 45
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=99.18 E-value=3.5e-10 Score=95.68 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=87.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-CCCc----------------eee-------eCCceeEEe-ec
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-SAGK----------------QLS-------FQDKAYTVE-EL 94 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-s~G~----------------~~~-------~~~~~~~v~-~~ 94 (279)
+||+|.| .|.+||.++|.+..+ |.++++++.... +... .+. ..+..+.+. +.
T Consensus 1 ikVgING-fGRIGR~v~r~~~~~--~~~evvaInd~~~~~~~~a~LlkyDs~~G~~~~~v~~~~~~l~v~G~~I~~~~~~ 77 (151)
T PF00044_consen 1 IKVGING-FGRIGRLVLRAALDQ--PDIEVVAINDPAPDPEYLAYLLKYDSVHGRFPGDVEVDDDGLIVNGKKIKVTEER 77 (151)
T ss_dssp EEEEEES-TSHHHHHHHHHHHTS--TTEEEEEEEESSSSHHHHHHHHHEETTTESGSSHEEEETTEEEETTEEEEEEHTS
T ss_pred CEEEEEC-CCcccHHHHHhhccc--ceEEEEEEecccccchhhhhhhhccccccceecccccccceeEeecccccchhhh
Confidence 5899999 899999999999987 999999997654 2110 111 112233333 23
Q ss_pred CccC--C--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCC
Q 023678 95 TEDS--F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 95 d~~~--~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPg 170 (279)
+++. | .++|+|+.|+|...+++.++.++++|++-|=+|++.- ++..+.++.++|.+.+.. +..+|+|.+
T Consensus 78 dp~~i~W~~~gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~-~~~~~t~V~GvN~~~~~~------~~~iIS~aS 150 (151)
T PF00044_consen 78 DPEEIPWGELGVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSK-DDADPTFVMGVNHDDYDP------EHHIISNAS 150 (151)
T ss_dssp SGGGSTHHHHTESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-S-SSSSEEE-TTTSGGGGTT------TTSEEEE--
T ss_pred hhcccccccccccEEEeccccceecccccccccccccceeeccccc-cccCCeEEeeccHHHhCC------CCCEEEccC
Confidence 3333 4 3899999999999999999999999996554888763 223689999999999874 348999999
Q ss_pred C
Q 023678 171 C 171 (279)
Q Consensus 171 C 171 (279)
|
T Consensus 151 C 151 (151)
T PF00044_consen 151 C 151 (151)
T ss_dssp H
T ss_pred C
Confidence 8
No 46
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=99.02 E-value=7.2e-09 Score=87.47 Aligned_cols=121 Identities=20% Similarity=0.307 Sum_probs=85.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-------------Cc---eeee-------CCceeEEe-ecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-------------GK---QLSF-------QDKAYTVE-ELT 95 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-------------G~---~~~~-------~~~~~~v~-~~d 95 (279)
+||+|+|+ |.+|+.+++.+.++ +.++++.+.+..+. |+ .+.+ .+..+.+. +-+
T Consensus 1 ikv~I~G~-GriGr~v~~~~~~~--~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~v~~~~~~l~i~g~~i~~~~~~~ 77 (149)
T smart00846 1 IKVGINGF-GRIGRLVLRALLER--PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGEVEVDEDGLIVNGKKIKVLAERD 77 (149)
T ss_pred CEEEEECc-CHHHHHHHHHHHhC--CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCcEEEeCCEEEECCEEEEEEecCC
Confidence 58999996 99999999999877 88999888653211 11 0110 11222222 122
Q ss_pred cc--CC--CCCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 96 ED--SF--DGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 96 ~~--~~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
+. .| .++|+|+.|+|...+++-+..++++|++-|=.|++. +++.+.+|.++|.+.+.. +..+|+|.+|
T Consensus 78 p~~~~w~~~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~--~~~~~t~V~GvN~~~~~~------~~~iiS~aSC 149 (149)
T smart00846 78 PANLPWKELGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPA--KDADKTFVYGVNHDEYDP------EDHIVSNASC 149 (149)
T ss_pred hHHCcccccCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCC--CCCCceEEEeechHHcCC------CCCEEEcCCC
Confidence 22 24 378999999999999998989999999655588875 233347899999999873 3559999999
No 47
>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]
Probab=98.51 E-value=6.5e-07 Score=77.70 Aligned_cols=127 Identities=20% Similarity=0.163 Sum_probs=73.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC---ceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD---KAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~---~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
|.++.+.|+||||.+|+.|++++.+. |.+.-+.+..||..-.+-.... ...++..++ ..++.+.|+.|||+|+
T Consensus 16 mq~~s~fvlGAtG~~G~~llk~~~E~--~~FSKV~~i~RR~~~d~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgT 93 (238)
T KOG4039|consen 16 MQNMSGFVLGATGLCGGGLLKHAQEA--PQFSKVYAILRRELPDPATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGT 93 (238)
T ss_pred hhccceEEEeccccccHHHHHHHHhc--ccceeEEEEEeccCCCccccceeeeEEechHHHHHHHhhhcCCceEEEeecc
Confidence 55678999999999999999999998 7775554434443211111111 111222222 2456799999999986
Q ss_pred chh---------------hhhHHHHHhCCCEEEE-cCCCCCCCCCCceeec----cCCHHhhhccccCCCCCcEEECCC
Q 023678 112 SIS---------------KKFGPIAVEKGSIVVD-NSSAFRMVENVPLVIP----EVNPEAMSGIKVGMGKGALIANPN 170 (279)
Q Consensus 112 ~~s---------------~~~~~~~~~aG~~VID-lS~~~R~~~~vplvvP----evN~~~i~~~~~~~~~~~iVanPg 170 (279)
+.. .+.++.+.+.||+-+- +|+.- -|++-.+..| ||.++.+.. + -+..+|--||
T Consensus 94 TRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~G-Ad~sSrFlY~k~KGEvE~~v~eL-~---F~~~~i~RPG 167 (238)
T KOG4039|consen 94 TRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSAG-ADPSSRFLYMKMKGEVERDVIEL-D---FKHIIILRPG 167 (238)
T ss_pred cccccccCceEeechHHHHHHHHHHHhCCCeEEEEEeccC-CCcccceeeeeccchhhhhhhhc-c---ccEEEEecCc
Confidence 543 4455666789996332 33322 2333333333 555554432 0 1456676775
No 48
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.36 E-value=7.5e-07 Score=72.62 Aligned_cols=94 Identities=16% Similarity=0.231 Sum_probs=66.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC---CCceeee----CCceeEEeecCccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLSF----QDKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s---~G~~~~~----~~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
|||+|+|++|..|+.+++.+.++ +.++++....++. .|+.+.. ....+.+.+--.+.+..+|+++.++.++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~--~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~p~ 78 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES--PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTNPD 78 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS--TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHhc--CCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCChH
Confidence 68999999999999999999998 9999998877655 4554432 1112223221022345699999999999
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCC
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
...++++.+++.|+.+|--+.-|
T Consensus 79 ~~~~~~~~~~~~g~~~ViGTTG~ 101 (124)
T PF01113_consen 79 AVYDNLEYALKHGVPLVIGTTGF 101 (124)
T ss_dssp HHHHHHHHHHHHT-EEEEE-SSS
T ss_pred HhHHHHHHHHhCCCCEEEECCCC
Confidence 99999999999999888666555
No 49
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.29 E-value=1.8e-06 Score=81.49 Aligned_cols=89 Identities=20% Similarity=0.237 Sum_probs=66.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee-cCc-cCCCCCcEEEecCCCchh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTE-DSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d~-~~~~~~DvVf~a~g~~~s 114 (279)
|+++||+|+| +|.+|+.+++.+.++ |.++++.+.+++..++ ... ...+.. .+. +...++|+|+.|+|+...
T Consensus 1 M~kIRVgIVG-~GnIGr~~a~al~~~--pd~ELVgV~dr~~~~~-~~~---~~~v~~~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 1 MSKIRAAIVG-YGNLGRSVEKAIQQQ--PDMELVGVFSRRGAET-LDT---ETPVYAVADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred CCCcEEEEEe-ecHHHHHHHHHHHhC--CCcEEEEEEcCCcHHH-Hhh---cCCccccCCHHHhccCCCEEEEcCCCccC
Confidence 4569999999 799999999999887 9999999877764222 111 111111 121 223679999999999988
Q ss_pred hhhHHHHHhCCCEEEEcC
Q 023678 115 KKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 115 ~~~~~~~~~aG~~VIDlS 132 (279)
.+.+..++++|..|||-.
T Consensus 74 ~~~~~~~L~aG~NVV~s~ 91 (324)
T TIGR01921 74 IPEQAPYFAQFANTVDSF 91 (324)
T ss_pred HHHHHHHHHcCCCEEECC
Confidence 899999999999999864
No 50
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.25 E-value=4.4e-06 Score=76.25 Aligned_cols=93 Identities=15% Similarity=0.208 Sum_probs=65.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
++||+|+|++|.+|+.+++.+.++ +.++++.+.++...... ......+.+ .+++ +.+.++|+|+.++++....++
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~--~~~elvav~d~~~~~~~-~~~~~~i~~~~dl~-~ll~~~DvVid~t~p~~~~~~ 76 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA--EDLELVAAVDRPGSPLV-GQGALGVAITDDLE-AVLADADVLIDFTTPEATLEN 76 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCcccc-ccCCCCccccCCHH-HhccCCCEEEECCCHHHHHHH
Confidence 479999999999999999999877 88999987765432111 011111111 1211 123478999989888888999
Q ss_pred HHHHHhCCCEEEEcCCCC
Q 023678 118 GPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~ 135 (279)
+..++++|+.||--+..|
T Consensus 77 ~~~al~~G~~vvigttG~ 94 (257)
T PRK00048 77 LEFALEHGKPLVIGTTGF 94 (257)
T ss_pred HHHHHHcCCCEEEECCCC
Confidence 999999999888544344
No 51
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=98.24 E-value=1.2e-05 Score=70.26 Aligned_cols=99 Identities=21% Similarity=0.323 Sum_probs=60.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCc---eeEEeecCc--cCCCCCcEEEecCCCchh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK---AYTVEELTE--DSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~---~~~v~~~d~--~~~~~~DvVf~a~g~~~s 114 (279)
||||||||||.+|.++++....|||. +.+++ |++.+.-.+.+. +-++.+++. +++.+.|+||+|.+...+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHe---VTAiv--Rn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~ 75 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHE---VTAIV--RNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGAGAS 75 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCe---eEEEE--eChHhccccccceeecccccChhhhHhhhcCCceEEEeccCCCC
Confidence 69999999999999999999999885 44554 233332111111 122333333 567899999999876522
Q ss_pred h--h--------hHHHHHhCCC---EEEEcCCCCCCCCCCce
Q 023678 115 K--K--------FGPIAVEKGS---IVVDNSSAFRMVENVPL 143 (279)
Q Consensus 115 ~--~--------~~~~~~~aG~---~VIDlS~~~R~~~~vpl 143 (279)
- + +...+..+|. .||--.+.+-++++..+
T Consensus 76 ~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rL 117 (211)
T COG2910 76 DNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRL 117 (211)
T ss_pred ChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCcee
Confidence 1 1 2222233466 36665566655665433
No 52
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.15 E-value=3.7e-06 Score=77.47 Aligned_cols=92 Identities=18% Similarity=0.254 Sum_probs=64.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--eeeC-CceeEEeecCccCCCCCcEEEecCCCch
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LSFQ-DKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~~~-~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
|+++||+||| .|.+|+.+.+.|.+. ++.++++.+.++.. .+. .... +....+.+++ +.+.++|+|+.|+++..
T Consensus 4 m~~irIGIIG-~G~IG~~~a~~L~~~-~~~~el~aV~dr~~-~~a~~~a~~~g~~~~~~~~e-ell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 4 RPELRVAIAG-LGAIGKAIAQALDRG-LPGLTLSAVAVRDP-QRHADFIWGLRRPPPVVPLD-QLATHADIVVEAAPASV 79 (271)
T ss_pred CCeeEEEEEC-ccHHHHHHHHHHHhc-CCCeEEEEEECCCH-HHHHHHHHhcCCCcccCCHH-HHhcCCCEEEECCCcHH
Confidence 5678999999 799999999998762 37788887766532 111 1100 1001112222 12357899999999999
Q ss_pred hhhhHHHHHhCCCEEEEcC
Q 023678 114 SKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS 132 (279)
..++...++++|+.||..|
T Consensus 80 h~e~~~~aL~aGk~Vi~~s 98 (271)
T PRK13302 80 LRAIVEPVLAAGKKAIVLS 98 (271)
T ss_pred HHHHHHHHHHcCCcEEEec
Confidence 9999999999999888654
No 53
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.08 E-value=9.9e-06 Score=74.33 Aligned_cols=91 Identities=19% Similarity=0.174 Sum_probs=63.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEE-eecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTV-EELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|+||+|+|+ |.+|+.+++.|.+. |..++..+..++....... .......+ .+++.- -.++|+|+.|+++....+
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~--~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l-~~~~DvVve~t~~~~~~e 76 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHD--PDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDAL-PQRPDLVVECAGHAALKE 76 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhC--CCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHh-ccCCCEEEECCCHHHHHH
Confidence 479999996 99999999999887 8888887764332211111 00011222 222211 246899999999999999
Q ss_pred hHHHHHhCCCEEEEcCC
Q 023678 117 FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~ 133 (279)
++.+++++|+.|+..+.
T Consensus 77 ~~~~aL~aGk~Vvi~s~ 93 (265)
T PRK13303 77 HVVPILKAGIDCAVISV 93 (265)
T ss_pred HHHHHHHcCCCEEEeCh
Confidence 99999999998886654
No 54
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.05 E-value=1.8e-05 Score=72.76 Aligned_cols=94 Identities=17% Similarity=0.176 Sum_probs=67.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Cceeee-CC---ceeEE-eecCccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQLSF-QD---KAYTV-EELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~~~~~-~~---~~~~v-~~~d~~~~~~~DvVf~a~g 110 (279)
++||+|+|++|..|+.+++.+.++ |.++++.+.++... ++.... .+ ..+.+ .+++.- ...+|+|+.|++
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~--~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l-~~~~DvVIdfT~ 77 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA--EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAV-ETDPDVLIDFTT 77 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC--CCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHh-cCCCCEEEECCC
Confidence 379999999999999999999887 99999988764321 222111 00 11222 222111 245899999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
+....+++..++++|+.||--+..|
T Consensus 78 p~~~~~~~~~al~~g~~vVigttg~ 102 (266)
T TIGR00036 78 PEGVLNHLKFALEHGVRLVVGTTGF 102 (266)
T ss_pred hHHHHHHHHHHHHCCCCEEEECCCC
Confidence 9999999999999999888666554
No 55
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.98 E-value=1.9e-05 Score=66.82 Aligned_cols=87 Identities=25% Similarity=0.297 Sum_probs=55.6
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC---c----cCCCCCcEEEecCCCc--
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---E----DSFDGVDIALFSAGGS-- 112 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d---~----~~~~~~DvVf~a~g~~-- 112 (279)
|+|+||||++|+.+++.|.+++ .++.++. |+.. +... ...+.+...| . ..+.++|+||++.++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~---~~V~~~~-R~~~-~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~ 73 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG---HEVTALV-RSPS-KAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK 73 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT---SEEEEEE-SSGG-GHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT
T ss_pred eEEECCCChHHHHHHHHHHHCC---CEEEEEe-cCch-hccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc
Confidence 7899999999999999999984 5777775 3322 1111 2233333322 2 2356999999999843
Q ss_pred ---hhhhhHHHHHhCCC-EEEEcCCCC
Q 023678 113 ---ISKKFGPIAVEKGS-IVVDNSSAF 135 (279)
Q Consensus 113 ---~s~~~~~~~~~aG~-~VIDlS~~~ 135 (279)
..+.+.+.+.++|+ ++|-+|+..
T Consensus 74 ~~~~~~~~~~a~~~~~~~~~v~~s~~~ 100 (183)
T PF13460_consen 74 DVDAAKNIIEAAKKAGVKRVVYLSSAG 100 (183)
T ss_dssp HHHHHHHHHHHHHHTTSSEEEEEEETT
T ss_pred cccccccccccccccccccceeeeccc
Confidence 34455555567788 455555544
No 56
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.95 E-value=3.1e-05 Score=71.95 Aligned_cols=90 Identities=18% Similarity=0.191 Sum_probs=53.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCch
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGSI 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~~ 113 (279)
|||.|.||||++|+.|++.|.+++| +++.+. |+... ..+...+.++...|+. + ..+.++|+||.+.+...
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~---~V~~l~-R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~ 76 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGY---QVRCLV-RNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRP 76 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCC---eEEEEE-cChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCC
Confidence 4899999999999999999998865 555564 32211 1111112222222332 2 23578999999875321
Q ss_pred -------------hhhhHHHHHhCCC-EEEEcCC
Q 023678 114 -------------SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 114 -------------s~~~~~~~~~aG~-~VIDlS~ 133 (279)
+..+++.+.++|+ ++|=.|+
T Consensus 77 ~~~~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss 110 (317)
T CHL00194 77 SDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110 (317)
T ss_pred CCccchhhhhHHHHHHHHHHHHHcCCCEEEEecc
Confidence 1334555667887 4555555
No 57
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.90 E-value=8.7e-05 Score=67.96 Aligned_cols=95 Identities=16% Similarity=0.172 Sum_probs=67.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC---Cceee----eCCceeEEeecCccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA---GKQLS----FQDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~---G~~~~----~~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
+|||+|+||+|..|+++++.+.+. |..+++....+... |+... .....+.+.+.......++|+++.-+-+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~--~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~P 79 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA--PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTTP 79 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC--CCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCCc
Confidence 689999999999999999999998 89999876655432 11110 0111223332111224578999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCC
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
..+.++++.+++.|...|--+.-|
T Consensus 80 ~~~~~~l~~~~~~~~~lVIGTTGf 103 (266)
T COG0289 80 EATLENLEFALEHGKPLVIGTTGF 103 (266)
T ss_pred hhhHHHHHHHHHcCCCeEEECCCC
Confidence 999999999999998655455555
No 58
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=97.87 E-value=8.9e-06 Score=62.37 Aligned_cols=91 Identities=12% Similarity=0.223 Sum_probs=58.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhhhH
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
||+||| +|..|..|++.|.++++...++..+.+++.... .+.... ...+...+ .+.++.+|+||+|++.....+.+
T Consensus 1 kI~iIG-~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~advvilav~p~~~~~v~ 78 (96)
T PF03807_consen 1 KIGIIG-AGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY-GVQATADDNEEAAQEADVVILAVKPQQLPEVL 78 (96)
T ss_dssp EEEEES-TSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC-TTEEESEEHHHHHHHTSEEEE-S-GGGHHHHH
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh-ccccccCChHHhhccCCEEEEEECHHHHHHHH
Confidence 799998 799999999999998764556655544432111 111111 11222211 23345789999999999888888
Q ss_pred HHH--HhCCCEEEEcCC
Q 023678 119 PIA--VEKGSIVVDNSS 133 (279)
Q Consensus 119 ~~~--~~aG~~VIDlS~ 133 (279)
..+ ...|..+||..+
T Consensus 79 ~~i~~~~~~~~vis~~a 95 (96)
T PF03807_consen 79 SEIPHLLKGKLVISIAA 95 (96)
T ss_dssp HHHHHHHTTSEEEEEST
T ss_pred HHHhhccCCCEEEEeCC
Confidence 776 668899999865
No 59
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.81 E-value=0.00014 Score=64.93 Aligned_cols=173 Identities=14% Similarity=0.103 Sum_probs=93.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceE-EEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCch
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRS-IKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~-l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
|+.+||+||| +|.+|+.+.+.|.++++...+ +... .++...+ .+.... .+.+.....+.+.++|+||.|++...
T Consensus 2 m~~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~DiViiavp~~~ 78 (245)
T PRK07634 2 LKKHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVS-NRSNVEKLDQLQARY-NVSTTTDWKQHVTSVDTIVLAMPPSA 78 (245)
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEE-CCCCHHHHHHHHHHc-CcEEeCChHHHHhcCCEEEEecCHHH
Confidence 4468999999 699999999998877544444 3333 3322111 111100 12222111123467999999999988
Q ss_pred hhhhHHHHHh--CCCEEEEcCCCCCCCC---C------CceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhc
Q 023678 114 SKKFGPIAVE--KGSIVVDNSSAFRMVE---N------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATP 182 (279)
Q Consensus 114 s~~~~~~~~~--aG~~VIDlS~~~R~~~---~------vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~P 182 (279)
.++....+.. .+..||+.++.+..+. . +....|....+.-. ....+..+.+..-...-.+..
T Consensus 79 ~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~-------g~~~~~~~~~~~~~~~~~v~~ 151 (245)
T PRK07634 79 HEELLAELSPLLSNQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGK-------SISLYTMGQSVNETHKETLQL 151 (245)
T ss_pred HHHHHHHHHhhccCCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhc-------CCeEEeeCCCCCHHHHHHHHH
Confidence 8887776542 3567888888775431 0 11234533332222 223333333333233333444
Q ss_pred hhhhcCc----cEEEEEEeecccccChhhHHHHHHHHHHHh
Q 023678 183 LHRRAKV----TRMVVSTYQAASGAGAAAMEELELQTREVL 219 (279)
Q Consensus 183 L~~~~~i----~~v~vtt~q~vSGaG~~~~~El~~qt~~l~ 219 (279)
|++..+- +.=..+.+++++|.|=+-+-.+.+...+++
T Consensus 152 lf~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~ 192 (245)
T PRK07634 152 ILKGIGTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEAT 192 (245)
T ss_pred HHHhCCCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHHH
Confidence 4444332 111356788888888666555555555543
No 60
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.77 E-value=0.00018 Score=66.09 Aligned_cols=170 Identities=11% Similarity=0.168 Sum_probs=96.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceee-eCC-ceeEEeecCccCCCCCcEEEecCCCch
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLS-FQD-KAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~-~~~-~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
|+.|||++|| .|..|+.+++.|.+++ ++..++... .|+ ..+... +.. ....+.+-..+...++|+||+|++...
T Consensus 1 ~~~mkI~~IG-~G~mG~aia~~l~~~g~~~~~~v~v~-~r~-~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~ 77 (279)
T PRK07679 1 MSIQNISFLG-AGSIAEAIIGGLLHANVVKGEQITVS-NRS-NETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKD 77 (279)
T ss_pred CCCCEEEEEC-ccHHHHHHHHHHHHCCCCCcceEEEE-CCC-CHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHH
Confidence 4557999999 7999999999998874 222344433 332 211111 100 012222111123467899999999988
Q ss_pred hhhhHHHHH---hCCCEEEEcCCCCCCC-------CCCc--eeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhh
Q 023678 114 SKKFGPIAV---EKGSIVVDNSSAFRMV-------ENVP--LVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAAT 181 (279)
Q Consensus 114 s~~~~~~~~---~aG~~VIDlS~~~R~~-------~~vp--lvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~ 181 (279)
..+.+..+. ..|..|||..+....+ .+.| ..+|-++...-.. -..++.+.++.... .-.+.
T Consensus 78 ~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~------~t~~~~~~~~~~~~-~~~v~ 150 (279)
T PRK07679 78 VAEALIPFKEYIHNNQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKS------ATAISPSKHATAEH-IQTAK 150 (279)
T ss_pred HHHHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcc------cEEEeeCCCCCHHH-HHHHH
Confidence 877776664 3577899986555443 1122 2344333322221 12333445554333 34567
Q ss_pred chhhhcCccEEEE------EEeecccccChhhHHHHHHHHHHH
Q 023678 182 PLHRRAKVTRMVV------STYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 182 PL~~~~~i~~v~v------tt~q~vSGaG~~~~~El~~qt~~l 218 (279)
+|++.++- +++ .+..+.+|+|-.-+-.+.+.+.++
T Consensus 151 ~l~~~~G~--~~~v~e~~~~~~~a~~Gsgpa~~~~~~eal~e~ 191 (279)
T PRK07679 151 ALFETIGL--VSVVEEEDMHAVTALSGSGPAYIYYVVEAMEKA 191 (279)
T ss_pred HHHHhCCc--EEEeCHHHhhhHHHhhcCHHHHHHHHHHHHHHH
Confidence 78777653 333 667889999977665555555544
No 61
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.75 E-value=5.1e-05 Score=69.59 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=62.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC-CceeE-EeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-DKAYT-VEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~-~~~~~-v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
||||+||| .|.+|+.+++.|.+.+ +.++++.+.+++. .+...+. ..... +.+++ +.+.++|+|+.|+++....+
T Consensus 1 mmrIgIIG-~G~iG~~ia~~l~~~~-~~~elv~v~d~~~-~~a~~~a~~~~~~~~~~~~-ell~~~DvVvi~a~~~~~~~ 76 (265)
T PRK13304 1 MLKIGIVG-CGAIASLITKAILSGR-INAELYAFYDRNL-EKAENLASKTGAKACLSID-ELVEDVDLVVECASVNAVEE 76 (265)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHcCC-CCeEEEEEECCCH-HHHHHHHHhcCCeeECCHH-HHhcCCCEEEEcCChHHHHH
Confidence 47999999 6999999999988752 2678777765432 1111110 00111 22222 12367999999999999999
Q ss_pred hHHHHHhCCCEEEEcCC
Q 023678 117 FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~ 133 (279)
++..++++|+.||..|.
T Consensus 77 ~~~~al~~Gk~Vvv~s~ 93 (265)
T PRK13304 77 VVPKSLENGKDVIIMSV 93 (265)
T ss_pred HHHHHHHcCCCEEEEch
Confidence 99999999998887654
No 62
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=97.64 E-value=0.00012 Score=65.08 Aligned_cols=106 Identities=15% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeecC-ccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
||+++|+| ||.+|..|.++|...+| ++. +.++|...+.-.. ......+...+ .+....+|+||+++|-.....
T Consensus 1 m~~~~i~G-tGniG~alA~~~a~ag~---eV~-igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~ 75 (211)
T COG2085 1 MMIIAIIG-TGNIGSALALRLAKAGH---EVI-IGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPD 75 (211)
T ss_pred CcEEEEec-cChHHHHHHHHHHhCCC---eEE-EecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHh
Confidence 46788888 89999999999988654 433 4445443321110 00111122222 234567999999999887777
Q ss_pred hHHHHHh--CCCEEEEcCCCC--CCCCCCceeeccCC
Q 023678 117 FGPIAVE--KGSIVVDNSSAF--RMVENVPLVIPEVN 149 (279)
Q Consensus 117 ~~~~~~~--aG~~VIDlS~~~--R~~~~vplvvPevN 149 (279)
....+.+ .|..|||.+-+. ...+..-|++|+=.
T Consensus 76 v~~~l~~~~~~KIvID~tnp~~~~~~~~~~~~~~~~~ 112 (211)
T COG2085 76 VLAELRDALGGKIVIDATNPIEVNGEPGDLYLVPSEG 112 (211)
T ss_pred HHHHHHHHhCCeEEEecCCCccccCCccccccCCCCC
Confidence 7776653 478999998864 22333334445433
No 63
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=97.62 E-value=0.00012 Score=67.29 Aligned_cols=95 Identities=15% Similarity=0.118 Sum_probs=65.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.+||+||| -|.+|+.+.+.|.....+.++++.+..+. ..+...+....-.+.+++.......|+|+.|.++..-++++
T Consensus 2 ~~rvgiIG-~GaIG~~va~~l~~~~~~~~~l~~V~~~~-~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~av~e~~ 79 (267)
T PRK13301 2 THRIAFIG-LGAIASDVAAGLLADAAQPCQLAALTRNA-ADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHA 79 (267)
T ss_pred ceEEEEEC-ccHHHHHHHHHHhcCCCCceEEEEEecCC-HHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHHHHHHHH
Confidence 47999999 69999999999876544668888885443 22211111111112223221125789999999999999999
Q ss_pred HHHHhCCCEEEEcC-CCC
Q 023678 119 PIAVEKGSIVVDNS-SAF 135 (279)
Q Consensus 119 ~~~~~aG~~VIDlS-~~~ 135 (279)
++.+++|+-++=+| ++|
T Consensus 80 ~~iL~~g~dlvv~SvGAL 97 (267)
T PRK13301 80 EGCLTAGLDMIICSAGAL 97 (267)
T ss_pred HHHHhcCCCEEEEChhHh
Confidence 99999999766666 555
No 64
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=97.56 E-value=0.00015 Score=69.45 Aligned_cols=88 Identities=20% Similarity=0.303 Sum_probs=55.5
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee--CCceeEEeecC---cc----CCCCCcEEEecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--QDKAYTVEELT---ED----SFDGVDIALFSAGG 111 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~--~~~~~~v~~~d---~~----~~~~~DvVf~a~g~ 111 (279)
|.|+|+ |++|+.+++.|.++ +..+-+.+++|+... +.+.. ....+....+| .+ .++++|+|+.|+|.
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~--~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp 77 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARR--GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP 77 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCT--TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred CEEEcC-cHHHHHHHHHHhcC--CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence 789999 99999999999988 555233444443211 11111 12233333332 11 24789999999999
Q ss_pred chhhhhHHHHHhCCCEEEEcC
Q 023678 112 SISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS 132 (279)
......+..++++|+..||.|
T Consensus 78 ~~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 78 FFGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp GGHHHHHHHHHHHT-EEEESS
T ss_pred chhHHHHHHHHHhCCCeeccc
Confidence 889999999999999999944
No 65
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=97.54 E-value=6.7e-05 Score=61.76 Aligned_cols=93 Identities=18% Similarity=0.264 Sum_probs=55.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.+||+|||| |.||..|.+.|.+.+| .+..+.+|+....... .......+.++ .+.+..+|++|+|++.+.-.+.
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~---~v~~v~srs~~sa~~a~~~~~~~~~~~~-~~~~~~aDlv~iavpDdaI~~v 84 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGH---EVVGVYSRSPASAERAAAFIGAGAILDL-EEILRDADLVFIAVPDDAIAEV 84 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTS---EEEEESSCHH-HHHHHHC--TT-----T-TGGGCC-SEEEE-S-CCHHHHH
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCC---eEEEEEeCCccccccccccccccccccc-ccccccCCEEEEEechHHHHHH
Confidence 589999995 9999999999998765 4566766543222111 11112223332 2335689999999999988898
Q ss_pred HHHHHhC-----CCEEEEcCCCCC
Q 023678 118 GPIAVEK-----GSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~~a-----G~~VIDlS~~~R 136 (279)
++.+.+. |-.|+=.|+.+-
T Consensus 85 a~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 85 AEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHHHHCC--S-TT-EEEES-SS--
T ss_pred HHHHHHhccCCCCcEEEECCCCCh
Confidence 8888765 667888887763
No 66
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.54 E-value=6.9e-05 Score=59.37 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=60.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eee-eCCceeEEeecCccCC--CCCcEEEecCCCchhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLS-FQDKAYTVEELTEDSF--DGVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~-~~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s~ 115 (279)
+||+|||+ |..|+..++.+.++ .+.++++.+.+++.... ... ..+.. .+.+++ +.+ .++|+|+.|+++....
T Consensus 1 i~v~iiG~-G~~g~~~~~~~~~~-~~~~~v~~v~d~~~~~~~~~~~~~~~~-~~~~~~-~ll~~~~~D~V~I~tp~~~h~ 76 (120)
T PF01408_consen 1 IRVGIIGA-GSIGRRHLRALLRS-SPDFEVVAVCDPDPERAEAFAEKYGIP-VYTDLE-ELLADEDVDAVIIATPPSSHA 76 (120)
T ss_dssp EEEEEEST-SHHHHHHHHHHHHT-TTTEEEEEEECSSHHHHHHHHHHTTSE-EESSHH-HHHHHTTESEEEEESSGGGHH
T ss_pred CEEEEECC-cHHHHHHHHHHHhc-CCCcEEEEEEeCCHHHHHHHHHHhccc-chhHHH-HHHHhhcCCEEEEecCCcchH
Confidence 58999995 99999999887665 27889998876543211 110 01112 233322 112 3799999999999999
Q ss_pred hhHHHHHhCCCEEE
Q 023678 116 KFGPIAVEKGSIVV 129 (279)
Q Consensus 116 ~~~~~~~~aG~~VI 129 (279)
+++.+++++|..|+
T Consensus 77 ~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 77 EIAKKALEAGKHVL 90 (120)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHHHcCCEEE
Confidence 99999999999776
No 67
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.53 E-value=0.00022 Score=64.82 Aligned_cols=89 Identities=18% Similarity=0.197 Sum_probs=51.8
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCcee-eeCCceeEEeecC--ccCC------CC-CcEEEecCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL-SFQDKAYTVEELT--EDSF------DG-VDIALFSAG 110 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~-~~~~~~~~v~~~d--~~~~------~~-~DvVf~a~g 110 (279)
+|.|+||||++|+.+++.|.+++|+ +.++ +|+...... .......++.+.+ ...+ .+ +|.+|++.+
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~---V~~~-~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~ 76 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVP---FLVA-SRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAP 76 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCc---EEEE-eCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence 4899999999999999999987653 4455 333221110 0000111122211 0112 56 999999887
Q ss_pred Cc-----hhhhhHHHHHhCCC-EEEEcCC
Q 023678 111 GS-----ISKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 111 ~~-----~s~~~~~~~~~aG~-~VIDlS~ 133 (279)
.. ....+++.+.++|+ ++|=+|+
T Consensus 77 ~~~~~~~~~~~~i~aa~~~gv~~~V~~Ss 105 (285)
T TIGR03649 77 PIPDLAPPMIKFIDFARSKGVRRFVLLSA 105 (285)
T ss_pred CCCChhHHHHHHHHHHHHcCCCEEEEeec
Confidence 43 23455666778898 3554554
No 68
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.53 E-value=0.00022 Score=76.54 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=64.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceE------------EEEEeecCCC-Cceeee--CC---ceeEEeecC-c-c
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRS------------IKMLASKRSA-GKQLSF--QD---KAYTVEELT-E-D 97 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~------------l~~l~s~~s~-G~~~~~--~~---~~~~v~~~d-~-~ 97 (279)
++.||+|+|| |++|+..++.|.++ |.++ ++.++++... .+.+.. .+ ..+++.+.+ . +
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~--~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~ 644 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASV--KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK 644 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhC--cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH
Confidence 3679999996 99999999999887 6655 5566654321 111111 11 112222221 1 1
Q ss_pred CCCCCcEEEecCCCchhhhhHHHHHhCCCEEEEcC
Q 023678 98 SFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 98 ~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
.++++|+|++|+|.....+.+..++++|+.++|.+
T Consensus 645 ~v~~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 645 YVSQVDVVISLLPASCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred hhcCCCEEEECCCchhhHHHHHHHHHcCCCEEECc
Confidence 23679999999999999999999999999999987
No 69
>PRK11579 putative oxidoreductase; Provisional
Probab=97.50 E-value=0.00027 Score=66.78 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=59.5
Q ss_pred CCEEEEECcCcHHHHH-HHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC--CCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQE-FLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF--DGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~e-Ll~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~--~~~DvVf~a~g~~~s~ 115 (279)
++||+||| +|.+|+. .++.+... |.++++++.++...-..-.+.+. ..+.+++ +.+ .++|+|+.|+|+....
T Consensus 4 ~irvgiiG-~G~i~~~~~~~~~~~~--~~~~l~av~d~~~~~~~~~~~~~-~~~~~~~-ell~~~~vD~V~I~tp~~~H~ 78 (346)
T PRK11579 4 KIRVGLIG-YGYASKTFHAPLIAGT--PGLELAAVSSSDATKVKADWPTV-TVVSEPQ-HLFNDPNIDLIVIPTPNDTHF 78 (346)
T ss_pred cceEEEEC-CCHHHHHHHHHHHhhC--CCCEEEEEECCCHHHHHhhCCCC-ceeCCHH-HHhcCCCCCEEEEcCCcHHHH
Confidence 48999999 6999985 56777666 88999988765421100001111 1122322 122 4689999999999999
Q ss_pred hhHHHHHhCCCEEE
Q 023678 116 KFGPIAVEKGSIVV 129 (279)
Q Consensus 116 ~~~~~~~~aG~~VI 129 (279)
+++.+++++|+.|+
T Consensus 79 ~~~~~al~aGkhVl 92 (346)
T PRK11579 79 PLAKAALEAGKHVV 92 (346)
T ss_pred HHHHHHHHCCCeEE
Confidence 99999999999877
No 70
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.49 E-value=0.00064 Score=62.66 Aligned_cols=169 Identities=12% Similarity=0.107 Sum_probs=95.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC-CceEEEEEeecCCCCceeee-CCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSF-QDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+||++|| .|..|+.+++.|.++++ +..++... ++ +..+.-.. ........+...+...++|+||+|++.....++
T Consensus 3 ~~IgfIG-~G~MG~aia~~L~~~g~~~~~~I~v~-~r-~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~v 79 (272)
T PRK12491 3 KQIGFIG-CGNMGIAMIGGMINKNIVSPDQIICS-DL-NVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSV 79 (272)
T ss_pred CeEEEEC-ccHHHHHHHHHHHHCCCCCCceEEEE-CC-CHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHH
Confidence 4799999 79999999999988765 33344433 32 22221100 000122222112234678999999999887777
Q ss_pred HHHHH---hCCCEEEEcCCCCCCCC---------CCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhh
Q 023678 118 GPIAV---EKGSIVVDNSSAFRMVE---------NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHR 185 (279)
Q Consensus 118 ~~~~~---~aG~~VIDlS~~~R~~~---------~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~ 185 (279)
++.+. +.+..|||.-+...++. .+.-++|.++-..-.. -..+..+++++...... +.-|++
T Consensus 80 l~~l~~~~~~~~lvISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g------~t~~~~~~~~~~~~~~~-v~~lf~ 152 (272)
T PRK12491 80 INQIKDQIKNDVIVVTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEG------MSALCFNEMVTEKDIKE-VLNIFN 152 (272)
T ss_pred HHHHHHhhcCCcEEEEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCc------eEEEEeCCCCCHHHHHH-HHHHHH
Confidence 76653 45789999988876542 1223466655433221 12233445554433222 222333
Q ss_pred hcC-c---cEEEEEEeecccccChhhHHHHHHHHHHH
Q 023678 186 RAK-V---TRMVVSTYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 186 ~~~-i---~~v~vtt~q~vSGaG~~~~~El~~qt~~l 218 (279)
..+ + +.=.+++++++||.|=+-+-.+.+.+.++
T Consensus 153 ~~G~~~~~~E~~~d~~talsgsgPAf~~~~~eal~~a 189 (272)
T PRK12491 153 IFGQTEVVNEKLMDVVTSISGSSPAYVYMFIEAMADA 189 (272)
T ss_pred cCCCEEEEcHHHhhhHHHhccCcHHHHHHHHHHHHHH
Confidence 333 2 22247889999999966555555555444
No 71
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.47 E-value=0.00026 Score=68.52 Aligned_cols=92 Identities=14% Similarity=0.161 Sum_probs=63.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-CCceeEEeecC---c----cCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-QDKAYTVEELT---E----DSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d---~----~~~~~~DvVf~a~ 109 (279)
|+||.|+|| |.||+.+...|+++ .+.++ .+++|.... ..+.. .+..+....+| . +.+++.|+|+.|+
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~--~d~~V-~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQN--GDGEV-TIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhC--CCceE-EEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 579999997 99999999999988 44564 344553211 11111 11122222222 1 2356789999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCC
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
|..+....++.++++|+.++|.|-.
T Consensus 77 p~~~~~~i~ka~i~~gv~yvDts~~ 101 (389)
T COG1748 77 PPFVDLTILKACIKTGVDYVDTSYY 101 (389)
T ss_pred CchhhHHHHHHHHHhCCCEEEcccC
Confidence 9999999999999999999998754
No 72
>PLN02206 UDP-glucuronate decarboxylase
Probab=97.46 E-value=0.00043 Score=67.99 Aligned_cols=94 Identities=19% Similarity=0.201 Sum_probs=56.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--e--eeCCceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--L--SFQDKAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~--~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
+.+||.|.||||++|+.|++.|.++++ +++.+. +...+.. . .+....+.+.+.| ...+.++|+||.+.+.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~---~V~~ld-~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~ViHlAa~ 193 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD---SVIVVD-NFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIYHLACP 193 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC---EEEEEe-CCCccchhhhhhhccCCceEEEECCccChhhcCCCEEEEeeee
Confidence 458999999999999999999998865 444442 2211111 0 0111123332222 2234578999988752
Q ss_pred ch------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 112 SI------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
.. +..+++.+.+.|+++|=.|+..
T Consensus 194 ~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~r~V~~SS~~ 235 (442)
T PLN02206 194 ASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSE 235 (442)
T ss_pred cchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECChH
Confidence 10 1334555567888888777764
No 73
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.46 E-value=0.00016 Score=68.93 Aligned_cols=139 Identities=17% Similarity=0.221 Sum_probs=78.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCcee---EEeecCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAY---TVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~---~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
..+|.|+||+|.+|+++.+.|.++. ...++..+. |. ..+..... .++ .+.+++ +.+.++|+||.+++.....
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~-R~-~~rl~~La-~el~~~~i~~l~-~~l~~aDiVv~~ts~~~~~ 229 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVA-RQ-QERLQELQ-AELGGGKILSLE-EALPEADIVVWVASMPKGV 229 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEc-CC-HHHHHHHH-HHhccccHHhHH-HHHccCCEEEECCcCCcCC
Confidence 5789999999999999999997541 233555553 32 11111110 011 111221 3456899999999875443
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCCc----eeec----------cCCHHhhhccccCCCCCcEE--ECCCChHHHHHHh
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENVP----LVIP----------EVNPEAMSGIKVGMGKGALI--ANPNCSTIICLMA 179 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~vp----lvvP----------evN~~~i~~~~~~~~~~~iV--anPgC~tt~l~la 179 (279)
..-+..++.++.|||++=+--.++++. +++. +++-..+-. .+.- ....|.+=.|+|+
T Consensus 230 ~I~~~~l~~~~~viDiAvPRDVd~~v~~~~V~v~~gG~V~~p~~vd~~l~~~v~-------~~~~~r~~~Ac~AEtiiL~ 302 (340)
T PRK14982 230 EIDPETLKKPCLMIDGGYPKNLDTKVQGPGIHVLKGGIVEHSLDIDWKIMEIAE-------MDNPQRQMFACFAEAMLLE 302 (340)
T ss_pred cCCHHHhCCCeEEEEecCCCCCCcccCCCCEEEEeCCccccCCCcCccHHHHHh-------ccchhhHHHHHHHHHHHHH
Confidence 233345578999999987644444331 1111 111111100 0111 1456888889999
Q ss_pred hhchhhhcCc
Q 023678 180 ATPLHRRAKV 189 (279)
Q Consensus 180 L~PL~~~~~i 189 (279)
|-..++.|-+
T Consensus 303 leg~~~~fS~ 312 (340)
T PRK14982 303 FEGCHTNFSW 312 (340)
T ss_pred hcCCccCCCc
Confidence 9888777644
No 74
>KOG0657 consensus Glyceraldehyde 3-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=97.43 E-value=7.5e-05 Score=68.44 Aligned_cols=94 Identities=21% Similarity=0.226 Sum_probs=78.5
Q ss_pred CCcEEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhh
Q 023678 101 GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAA 180 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL 180 (279)
++|.+...+|...+.+.+..+.+.|++.+-.|+.- .|.|..+..||.+.... ...+|+|..|++.++++-.
T Consensus 74 g~~~v~e~tg~f~t~e~~~~~~~~gakkviisaps---~dapmfv~gVn~~~y~~------~~~iiSnascttnclaPla 144 (285)
T KOG0657|consen 74 GADIVVESTGVFTTMEKPGKHFQGGAKKVIISAPS---ADAPMFVMGVNGEKYDN------SLDIISNASCTTNCLAPLA 144 (285)
T ss_pred cceeEeeccccccccccccccccccceEEEecccc---CCCCccccccccccccc------ccceeechhhhhccccchh
Confidence 78999999999999999999889999755555542 35789999999998874 3458999999999988888
Q ss_pred hchhhhcCccEEEEEEeeccccc
Q 023678 181 TPLHRRAKVTRMVVSTYQAASGA 203 (279)
Q Consensus 181 ~PL~~~~~i~~v~vtt~q~vSGa 203 (279)
+-++++|+|....++|.++++.-
T Consensus 145 KVi~d~fgI~EgLMtTvha~tat 167 (285)
T KOG0657|consen 145 KVIHDNFGIMEGLMTTVHAITAT 167 (285)
T ss_pred heeccccccccccccceeeeccc
Confidence 99999999988888888877653
No 75
>PRK06349 homoserine dehydrogenase; Provisional
Probab=97.43 E-value=0.00041 Score=67.85 Aligned_cols=91 Identities=21% Similarity=0.260 Sum_probs=59.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-------CCceEEEEEeecCCCCceeeeCCceeEEeecCccC-C--CCCcEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F--DGVDIAL 106 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-------~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~-~--~~~DvVf 106 (279)
|+++||+|+| .|.||+.+++.|.++. -..++++.+.+++.. +..........+.+ +.++ + .++|+|+
T Consensus 1 m~~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~-~~~~~~~~~~~~~~-d~~~ll~d~~iDvVv 77 (426)
T PRK06349 1 MKPLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE-KDRGVDLPGILLTT-DPEELVNDPDIDIVV 77 (426)
T ss_pred CCeEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh-hccCCCCcccceeC-CHHHHhhCCCCCEEE
Confidence 4568999999 8999999999987651 025788877765421 11111101111111 1111 2 3689999
Q ss_pred ecCCC-chhhhhHHHHHhCCCEEEE
Q 023678 107 FSAGG-SISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 107 ~a~g~-~~s~~~~~~~~~aG~~VID 130 (279)
.|++. +.+.++..+++++|..||-
T Consensus 78 e~tg~~~~~~~~~~~aL~~GkhVVt 102 (426)
T PRK06349 78 ELMGGIEPARELILKALEAGKHVVT 102 (426)
T ss_pred ECCCCchHHHHHHHHHHHCCCeEEE
Confidence 99865 5678899999999999983
No 76
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.42 E-value=0.0002 Score=66.68 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=61.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCCC-ceeee-CCceeEEeecCcc-CCCCCcEEEecCCCc
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAG-KQLSF-QDKAYTVEELTED-SFDGVDIALFSAGGS 112 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~G-~~~~~-~~~~~~v~~~d~~-~~~~~DvVf~a~g~~ 112 (279)
|+++||||||+.|+.+...+..+.+. +. ++++.+.+++... +.... .+....+.+++.- ...++|+|+.|+|+.
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~--~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~ 78 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAAL--GGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNA 78 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhC--CCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCCh
Confidence 46799999997678888899888876 55 6888886654321 11110 0111122222211 113589999999999
Q ss_pred hhhhhHHHHHhCCCEEE
Q 023678 113 ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VI 129 (279)
...+++.+++++|+.|+
T Consensus 79 ~H~e~~~~AL~aGkhVl 95 (342)
T COG0673 79 LHAELALAALEAGKHVL 95 (342)
T ss_pred hhHHHHHHHHhcCCEEE
Confidence 99999999999999887
No 77
>PRK06444 prephenate dehydrogenase; Provisional
Probab=97.39 E-value=0.0003 Score=62.12 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=49.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhHH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGP 119 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~~ 119 (279)
|||+|||++|..|+-+.+.+.+.||+.. +.++|+||+|+|-....++++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~-------------------------------~~~~DlVilavPv~~~~~~i~ 49 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY-------------------------------IKKADHAFLSVPIDAALNYIE 49 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE-------------------------------ECCCCEEEEeCCHHHHHHHHH
Confidence 5899999999999999999987755421 246899999999998888887
Q ss_pred HHHhCCCEEEEcCCC
Q 023678 120 IAVEKGSIVVDNSSA 134 (279)
Q Consensus 120 ~~~~aG~~VIDlS~~ 134 (279)
+.. ..|+|.+|-
T Consensus 50 ~~~---~~v~Dv~Sv 61 (197)
T PRK06444 50 SYD---NNFVEISSV 61 (197)
T ss_pred HhC---CeEEecccc
Confidence 764 258899885
No 78
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.39 E-value=0.0001 Score=65.07 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=53.6
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC---ceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCc-
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG---KQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGS- 112 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G---~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~- 112 (279)
|+|+||||.+|+.+++.|... .+++.++. |.... +.+...+..+...+++ . ..+.++|.||++++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~---~~~V~~l~-R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~ 76 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA---GFSVRALV-RDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH 76 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT---TGCEEEEE-SSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC
T ss_pred CEEECCccHHHHHHHHHHHhC---CCCcEEEE-eccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch
Confidence 789999999999999999985 44566664 33211 1112223333323443 2 2368999999999933
Q ss_pred -----hhhhhHHHHHhCCCEEE
Q 023678 113 -----ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 113 -----~s~~~~~~~~~aG~~VI 129 (279)
....++..+.++|++-+
T Consensus 77 ~~~~~~~~~li~Aa~~agVk~~ 98 (233)
T PF05368_consen 77 PSELEQQKNLIDAAKAAGVKHF 98 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT-SEE
T ss_pred hhhhhhhhhHHHhhhccccceE
Confidence 44667777788998533
No 79
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=97.39 E-value=0.00089 Score=68.79 Aligned_cols=104 Identities=16% Similarity=0.171 Sum_probs=61.0
Q ss_pred CCCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--eeeCCceeEEeecC-c--
Q 023678 22 PRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LSFQDKAYTVEELT-E-- 96 (279)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~~~~~~~~v~~~d-~-- 96 (279)
-..||.|+..+ ++||.|.||||++|+.|++.|.++ ...+++.+. +.+.... ......++...|+. .
T Consensus 304 ~~~~~~~~~~~------~~~VLVTGatGFIGs~Lv~~Ll~~--~g~~V~~l~-r~~~~~~~~~~~~~~~~~~gDl~d~~~ 374 (660)
T PRK08125 304 LNSKPACSAKR------RTRVLILGVNGFIGNHLTERLLRD--DNYEVYGLD-IGSDAISRFLGHPRFHFVEGDISIHSE 374 (660)
T ss_pred ecccchhhhhc------CCEEEEECCCchHHHHHHHHHHhC--CCcEEEEEe-CCchhhhhhcCCCceEEEeccccCcHH
Confidence 46788888776 678999999999999999999875 234666663 3221111 11011112122331 1
Q ss_pred ---cCCCCCcEEEecCCCch------------------hhhhHHHHHhCCCEEEEcCCC
Q 023678 97 ---DSFDGVDIALFSAGGSI------------------SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 97 ---~~~~~~DvVf~a~g~~~------------------s~~~~~~~~~aG~~VIDlS~~ 134 (279)
..+.++|+||-+++... +...+..+.+.|.++|=.|+.
T Consensus 375 ~l~~~l~~~D~ViHlAa~~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~~~~V~~SS~ 433 (660)
T PRK08125 375 WIEYHIKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLKIIRYCVKYNKRIIFPSTS 433 (660)
T ss_pred HHHHHhcCCCEEEECccccCchhhccCHHHHHHhhHHHHHHHHHHHHhcCCeEEEEcch
Confidence 12468999997654211 122334445677777766664
No 80
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=97.37 E-value=0.00035 Score=67.18 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=56.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.++|+|+|++|.+|+.+.+.|.+++|+ +..+ +++.. .+. .+.+.++|+||.|+|.....+.+
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~---V~~~-d~~~~-------------~~~-~~~~~~aDlVilavP~~~~~~~~ 159 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQ---VRIL-EQDDW-------------DRA-EDILADAGMVIVSVPIHLTEEVI 159 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCe---EEEe-CCCcc-------------hhH-HHHHhcCCEEEEeCcHHHHHHHH
Confidence 478999999999999999999987653 3333 33210 010 12346799999999998877777
Q ss_pred HHHH--hCCCEEEEcCCC
Q 023678 119 PIAV--EKGSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~--~aG~~VIDlS~~ 134 (279)
..+. ..|+.|+|++|-
T Consensus 160 ~~l~~l~~~~iv~Dv~Sv 177 (374)
T PRK11199 160 ARLPPLPEDCILVDLTSV 177 (374)
T ss_pred HHHhCCCCCcEEEECCCc
Confidence 6653 468999999884
No 81
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.37 E-value=0.0017 Score=59.73 Aligned_cols=168 Identities=9% Similarity=0.062 Sum_probs=89.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
|+||+||| .|.+|..+.+.|.+.+ ++..++..+ +++...+ .+........+.....+...++|+||+|+++....
T Consensus 1 m~~I~iIG-~G~mG~ala~~L~~~g~~~~~~V~~~-~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~ 78 (277)
T PRK06928 1 MEKIGFIG-YGSMADMIATKLLETEVATPEEIILY-SSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVL 78 (277)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCCCCcccEEEE-eCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHH
Confidence 36899999 7999999999998764 223455544 3332111 01000101122111112246789999999998888
Q ss_pred hhHHHHH---hCCCEEEEcCCCCCCCC------C--CceeeccCCHHhhhccccCCCCCcEE-ECCCChHHHHHHhhhch
Q 023678 116 KFGPIAV---EKGSIVVDNSSAFRMVE------N--VPLVIPEVNPEAMSGIKVGMGKGALI-ANPNCSTIICLMAATPL 183 (279)
Q Consensus 116 ~~~~~~~---~aG~~VIDlS~~~R~~~------~--vplvvPevN~~~i~~~~~~~~~~~iV-anPgC~tt~l~laL~PL 183 (279)
+++.++. ..|+.||...+...+++ . +.-++|.+.-..-+ ....+ .+++.+...... +..|
T Consensus 79 ~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~~~~~~~vvR~MPN~~~~~g~-------g~t~~~~~~~~~~~~~~~-v~~l 150 (277)
T PRK06928 79 PLLKDCAPVLTPDRHVVSIAAGVSLDDLLEITPGLQVSRLIPSLTSAVGV-------GTSLVAHAETVNEANKSR-LEET 150 (277)
T ss_pred HHHHHHHhhcCCCCEEEEECCCCCHHHHHHHcCCCCEEEEeCccHHHHhh-------hcEEEecCCCCCHHHHHH-HHHH
Confidence 8777663 46788888877654431 1 11234444332211 22223 333443332222 2233
Q ss_pred hhhcC----ccEEEEEEeecccccChhhHHHHHHHHH
Q 023678 184 HRRAK----VTRMVVSTYQAASGAGAAAMEELELQTR 216 (279)
Q Consensus 184 ~~~~~----i~~v~vtt~q~vSGaG~~~~~El~~qt~ 216 (279)
+..+| ++.=.++++++.||.|=+-+-.+.+...
T Consensus 151 ~~~~G~~~~v~E~~~d~~tal~gsgPA~~~~~~~al~ 187 (277)
T PRK06928 151 LSHFSHVMTIREENMDIASNLTSSSPGFIAAIFEEFA 187 (277)
T ss_pred HHhCCCEEEEchhhCceeeeeecCHHHHHHHHHHHHH
Confidence 33332 2222467888889888665544444443
No 82
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=97.35 E-value=0.00058 Score=60.59 Aligned_cols=95 Identities=15% Similarity=0.137 Sum_probs=59.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee--------eCCceeEEeecC-ccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--------FQDKAYTVEELT-EDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--------~~~~~~~v~~~d-~~~~~~~DvVf~a~ 109 (279)
|||+|||++|.+|+.|.+.|.+.+| ++... +++... ..+. ..+....+...+ .+...++|+||+|+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~---~V~v~-~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilav 76 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGN---KIIIG-SRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAV 76 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCC---EEEEE-EcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEEC
Confidence 5899999899999999999998754 44433 443211 0000 001111122112 23356789999999
Q ss_pred CCchhhhhHHHHHh--CCCEEEEcCCCCCCC
Q 023678 110 GGSISKKFGPIAVE--KGSIVVDNSSAFRMV 138 (279)
Q Consensus 110 g~~~s~~~~~~~~~--aG~~VIDlS~~~R~~ 138 (279)
+.....+.++.+.. .+..|||.+..+..+
T Consensus 77 p~~~~~~~l~~l~~~l~~~vvI~~~ngi~~~ 107 (219)
T TIGR01915 77 PWDHVLKTLESLRDELSGKLVISPVVPLASD 107 (219)
T ss_pred CHHHHHHHHHHHHHhccCCEEEEeccCceec
Confidence 99877777665532 457899999887653
No 83
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=97.35 E-value=0.0008 Score=65.97 Aligned_cols=93 Identities=18% Similarity=0.195 Sum_probs=55.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--ee--eCCceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LS--FQDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~--~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
.|||.|.||||+||+.|++.|.++++ +++++. +...+.. .. .....+.+...| ...+.++|+||-++...
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~---~V~~ld-r~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~ViHlAa~~ 195 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD---EVIVID-NFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIYHLACPA 195 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC---EEEEEe-CCCCccHhHhhhhccCCceEEEECccccccccCCCEEEECceec
Confidence 58999999999999999999998754 555553 2222211 10 011122333222 22346799999987521
Q ss_pred h------------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 113 I------------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~------------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
. +..++..+.+.|+++|=.|+..
T Consensus 196 ~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~ 236 (436)
T PLN02166 196 SPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSE 236 (436)
T ss_pred cchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHH
Confidence 1 2334445556788877666653
No 84
>PLN02688 pyrroline-5-carboxylate reductase
Probab=97.31 E-value=0.004 Score=56.43 Aligned_cols=169 Identities=13% Similarity=0.159 Sum_probs=92.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC-CceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||++|| .|..|..+.+.|.+.+| +..++.....+ +..+.-.+....+.+.....+...++|+||+|++.....+..
T Consensus 1 ~kI~~IG-~G~mG~a~a~~L~~~g~~~~~~i~v~~~r-~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl 78 (266)
T PLN02688 1 FRVGFIG-AGKMAEAIARGLVASGVVPPSRISTADDS-NPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVL 78 (266)
T ss_pred CeEEEEC-CcHHHHHHHHHHHHCCCCCcceEEEEeCC-CHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHH
Confidence 5899999 89999999999988765 33344443233 222211111011222211122346789999999887777776
Q ss_pred HHHH---hCCCEEEEcCCCCCCCC------CCce--eeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhc
Q 023678 119 PIAV---EKGSIVVDNSSAFRMVE------NVPL--VIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRA 187 (279)
Q Consensus 119 ~~~~---~aG~~VIDlS~~~R~~~------~vpl--vvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~ 187 (279)
..+. ..|..||+..+....+. ..++ .+|.. +..+.. ....++..+++.... .-.+.+|++..
T Consensus 79 ~~l~~~~~~~~~iIs~~~g~~~~~l~~~~~~~~vvr~mP~~-~~~~~~-----~~~~l~~~~~~~~~~-~~~v~~l~~~~ 151 (266)
T PLN02688 79 TELRPLLSKDKLLVSVAAGITLADLQEWAGGRRVVRVMPNT-PCLVGE-----AASVMSLGPAATADD-RDLVATLFGAV 151 (266)
T ss_pred HHHHhhcCCCCEEEEecCCCcHHHHHHHcCCCCEEEECCCc-HHHHhC-----ceEEEEeCCCCCHHH-HHHHHHHHHhC
Confidence 5553 45777887766544321 0022 13322 222221 023344555555444 34567888776
Q ss_pred CccEEE-----EEEeecccccChhhHHHHHHHHHHH
Q 023678 188 KVTRMV-----VSTYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 188 ~i~~v~-----vtt~q~vSGaG~~~~~El~~qt~~l 218 (279)
+- -+. ++.+.+.+|.|-.-+-.+.+.+.++
T Consensus 152 G~-~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea 186 (266)
T PLN02688 152 GK-IWVVDEKLLDAVTGLSGSGPAYIFLAIEALADG 186 (266)
T ss_pred CC-EEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHH
Confidence 53 222 2344577888877655555555554
No 85
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.29 E-value=0.00027 Score=56.43 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=52.7
Q ss_pred CcHHHHHHHHHHHcCCC-CceEEEEEeecCCCCce--e-eeCCceeEEeecCc-cCCCCCcEEEecCCCchhhhhHHHHH
Q 023678 48 TGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAGKQ--L-SFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKFGPIAV 122 (279)
Q Consensus 48 TG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G~~--~-~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~~~~~~~ 122 (279)
.|.||+.++++|.++.- ..+++..+.+++ .... . ..........+++. -...+.|+|+.|++.+...++.++++
T Consensus 2 ~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~~~~~~~~L 80 (117)
T PF03447_consen 2 FGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAVAEYYEKAL 80 (117)
T ss_dssp -SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHHHHHHHHHH
Confidence 79999999999988721 168888887765 1100 0 00011112222221 11126899999999999999999999
Q ss_pred hCCCEEEEcC
Q 023678 123 EKGSIVVDNS 132 (279)
Q Consensus 123 ~aG~~VIDlS 132 (279)
++|+-||-.+
T Consensus 81 ~~G~~VVt~n 90 (117)
T PF03447_consen 81 ERGKHVVTAN 90 (117)
T ss_dssp HTTCEEEES-
T ss_pred HCCCeEEEEC
Confidence 9999998544
No 86
>PRK08818 prephenate dehydrogenase; Provisional
Probab=97.27 E-value=0.00085 Score=64.65 Aligned_cols=82 Identities=21% Similarity=0.197 Sum_probs=58.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|+|||.+|.+|+.+.+.|.+. ...++..+ ++... ...+. .+.+.++|+||+|+|-....++.
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~--~~~~V~g~-D~~d~-----------~~~~~-~~~v~~aDlVilavPv~~~~~~l 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTR--MQLEVIGH-DPADP-----------GSLDP-ATLLQRADVLIFSAPIRHTAALI 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhc--CCCEEEEE-cCCcc-----------ccCCH-HHHhcCCCEEEEeCCHHHHHHHH
Confidence 379999998899999999999865 24454444 22100 00010 12357899999999999998888
Q ss_pred HHHH------hCCCEEEEcCCCC
Q 023678 119 PIAV------EKGSIVVDNSSAF 135 (279)
Q Consensus 119 ~~~~------~aG~~VIDlS~~~ 135 (279)
+++. +.|+.|.|.+|--
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK 91 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIK 91 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCc
Confidence 8764 5799999999853
No 87
>PLN02256 arogenate dehydrogenase
Probab=97.26 E-value=0.0013 Score=61.74 Aligned_cols=89 Identities=12% Similarity=0.183 Sum_probs=56.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccC-C-CCCcEEEecCCCchh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSIS 114 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~-~-~~~DvVf~a~g~~~s 114 (279)
+++++|+||| .|.+|+.+.+.|.+.+ .++..+. ++.. ...... ..+... .+.++ . .++|+||.|++....
T Consensus 34 ~~~~kI~IIG-~G~mG~slA~~L~~~G---~~V~~~d-~~~~-~~~a~~-~gv~~~-~~~~e~~~~~aDvVilavp~~~~ 105 (304)
T PLN02256 34 SRKLKIGIVG-FGNFGQFLAKTFVKQG---HTVLATS-RSDY-SDIAAE-LGVSFF-RDPDDFCEEHPDVVLLCTSILST 105 (304)
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhCC---CEEEEEE-CccH-HHHHHH-cCCeee-CCHHHHhhCCCCEEEEecCHHHH
Confidence 3467999999 7999999999998764 3555443 3321 111100 011111 11111 2 368999999999887
Q ss_pred hhhHHHH----HhCCCEEEEcCC
Q 023678 115 KKFGPIA----VEKGSIVVDNSS 133 (279)
Q Consensus 115 ~~~~~~~----~~aG~~VIDlS~ 133 (279)
.++..++ +..|+.|+|.++
T Consensus 106 ~~vl~~l~~~~l~~~~iviDv~S 128 (304)
T PLN02256 106 EAVLRSLPLQRLKRSTLFVDVLS 128 (304)
T ss_pred HHHHHhhhhhccCCCCEEEecCC
Confidence 7777765 346889999998
No 88
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=97.25 E-value=0.001 Score=61.39 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=105.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceeeeC-CceeEEeecCc-cCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQ-DKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~~~-~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~ 115 (279)
++||++|| .|..|+.+++-|.+++ .+..++.. +.++..+..... .-.... ..+. +....+|+||+|.-+....
T Consensus 1 ~~~IgfIG-~G~Mg~Ai~~gl~~~g~~~~~~I~v--~~~~~e~~~~l~~~~g~~~-~~~~~~~~~~advv~LavKPq~~~ 76 (266)
T COG0345 1 MMKIGFIG-AGNMGEAILSGLLKSGALPPEEIIV--TNRSEEKRAALAAEYGVVT-TTDNQEAVEEADVVFLAVKPQDLE 76 (266)
T ss_pred CceEEEEc-cCHHHHHHHHHHHhcCCCCcceEEE--eCCCHHHHHHHHHHcCCcc-cCcHHHHHhhCCEEEEEeChHhHH
Confidence 47899999 6999999999999885 44445433 333333221110 001111 2222 2346799999999998888
Q ss_pred hhHHHHHh--CCCEEEEcCCCCCCCC------CCc--eeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhh
Q 023678 116 KFGPIAVE--KGSIVVDNSSAFRMVE------NVP--LVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHR 185 (279)
Q Consensus 116 ~~~~~~~~--aG~~VIDlS~~~R~~~------~vp--lvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~ 185 (279)
+...++.. .+..||...+..+.+. +.+ =++|..+...-+. -..+..+.+|+......+..-|-.
T Consensus 77 ~vl~~l~~~~~~~lvISiaAGv~~~~l~~~l~~~~vvR~MPNt~a~vg~g------~t~i~~~~~~~~~~~~~v~~l~~~ 150 (266)
T COG0345 77 EVLSKLKPLTKDKLVISIAAGVSIETLERLLGGLRVVRVMPNTPALVGAG------VTAISANANVSEEDKAFVEALLSA 150 (266)
T ss_pred HHHHHhhcccCCCEEEEEeCCCCHHHHHHHcCCCceEEeCCChHHHHcCc------ceeeecCccCCHHHHHHHHHHHHh
Confidence 88887753 7778999888766542 222 3567766544432 245666788887776555433322
Q ss_pred hcC---ccEEEEEEeecccccChhhHHHHHHHHHHH
Q 023678 186 RAK---VTRMVVSTYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 186 ~~~---i~~v~vtt~q~vSGaG~~~~~El~~qt~~l 218 (279)
-+. |+.-.++++.++||.|=+-+--+.+.+.+.
T Consensus 151 ~G~v~~v~E~~~da~TaisGSgPAyv~~~iEal~~a 186 (266)
T COG0345 151 VGKVVEVEESLMDAVTALSGSGPAYVFLFIEALADA 186 (266)
T ss_pred cCCeEEechHHhhHHHHHhcCCHHHHHHHHHHHHHH
Confidence 222 333468999999999977665555555444
No 89
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=97.21 E-value=0.00044 Score=63.56 Aligned_cols=89 Identities=13% Similarity=0.120 Sum_probs=55.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+||| .|.+|+.+.+.|.+++| ++..+ +++.... .....+ .......+.+...++|+||+|++.....+..
T Consensus 1 m~I~IIG-~G~mG~sla~~L~~~g~---~V~~~-d~~~~~~~~a~~~g-~~~~~~~~~~~~~~aDlVilavp~~~~~~~~ 74 (279)
T PRK07417 1 MKIGIVG-LGLIGGSLGLDLRSLGH---TVYGV-SRRESTCERAIERG-LVDEASTDLSLLKDCDLVILALPIGLLLPPS 74 (279)
T ss_pred CeEEEEe-ecHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHHHCC-CcccccCCHhHhcCCCEEEEcCCHHHHHHHH
Confidence 4899999 79999999999988754 44444 3321110 000011 0111111122356899999999988776766
Q ss_pred HHHH---hCCCEEEEcCCC
Q 023678 119 PIAV---EKGSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~---~aG~~VIDlS~~ 134 (279)
+++. ..++.|+|.++-
T Consensus 75 ~~l~~~l~~~~ii~d~~Sv 93 (279)
T PRK07417 75 EQLIPALPPEAIVTDVGSV 93 (279)
T ss_pred HHHHHhCCCCcEEEeCcch
Confidence 6554 457889998764
No 90
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00078 Score=62.50 Aligned_cols=93 Identities=17% Similarity=0.194 Sum_probs=59.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee--CCceeEE-eecCccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF--QDKAYTV-EELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~--~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
+++|+|+| .|.+|+.+.+.|.++++ ... .+...++.+..... .+..... .+.......++|+||.|+|-..+.
T Consensus 3 ~~~v~IvG-~GliG~s~a~~l~~~g~-~v~--i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~ 78 (279)
T COG0287 3 SMKVGIVG-LGLMGGSLARALKEAGL-VVR--IIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATE 78 (279)
T ss_pred CcEEEEEC-CchHHHHHHHHHHHcCC-eEE--EEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHH
Confidence 57899999 89999999999988754 222 23222222211110 0100111 111123345789999999999888
Q ss_pred hhHHHHH---hCCCEEEEcCCCC
Q 023678 116 KFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~---~aG~~VIDlS~~~ 135 (279)
+++.++. +.|+.|.|.+|.-
T Consensus 79 ~~l~~l~~~l~~g~iv~Dv~S~K 101 (279)
T COG0287 79 EVLKELAPHLKKGAIVTDVGSVK 101 (279)
T ss_pred HHHHHhcccCCCCCEEEeccccc
Confidence 8887775 5899999999864
No 91
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.15 E-value=0.00066 Score=64.53 Aligned_cols=91 Identities=19% Similarity=0.280 Sum_probs=57.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC------C-CceEEEEEeecCC-----CCceee----eC--CceeE-Ee----ecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD------F-PYRSIKMLASKRS-----AGKQLS----FQ--DKAYT-VE----ELT 95 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~------~-p~~~l~~l~s~~s-----~G~~~~----~~--~~~~~-v~----~~d 95 (279)
.+||+|+| .|.||+.+++.|.++. + ..++++.+++++. .|.... +. ...+. +. ..+
T Consensus 2 ~i~V~IiG-~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 2 EMKIALIG-FGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred eEEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 47999999 6999999999997651 0 2678888876431 121111 00 00000 00 011
Q ss_pred ccC-C--CCCcEEEecCCCc-----hhhhhHHHHHhCCCEEEE
Q 023678 96 EDS-F--DGVDIALFSAGGS-----ISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 96 ~~~-~--~~~DvVf~a~g~~-----~s~~~~~~~~~aG~~VID 130 (279)
.++ + .++|+|+.|+++. .+.+++..++++|+.||-
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 111 2 3689999999864 357888999999999984
No 92
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.15 E-value=0.00073 Score=60.79 Aligned_cols=147 Identities=21% Similarity=0.267 Sum_probs=88.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee--eCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--FQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
++|+||| -|.+|..+++++.+.. -.++++++..++..- +.+. +... .+.++|. ...+.|+++.|.++...++
T Consensus 1 l~vgiVG-cGaIG~~l~e~v~~~~-~~~e~v~v~D~~~ek~~~~~~~~~~~--~~s~ide-~~~~~DlvVEaAS~~Av~e 75 (255)
T COG1712 1 LKVGIVG-CGAIGKFLLELVRDGR-VDFELVAVYDRDEEKAKELEASVGRR--CVSDIDE-LIAEVDLVVEAASPEAVRE 75 (255)
T ss_pred CeEEEEe-ccHHHHHHHHHHhcCC-cceeEEEEecCCHHHHHHHHhhcCCC--ccccHHH-HhhccceeeeeCCHHHHHH
Confidence 5899999 5999999999987642 357888776543211 1111 1111 1233332 2378999999999999999
Q ss_pred hHHHHHhCCCEEEEcC-CCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCccEEEEE
Q 023678 117 FGPIAVEKGSIVVDNS-SAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVS 195 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS-~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~~v~vt 195 (279)
++++++++|+-||-+| +++- |++. -|=-.+..+. .++++..-+| ++.-+=+|+.+ +.++|+.|..+
T Consensus 76 ~~~~~L~~g~d~iV~SVGALa-d~~l----~erl~~lak~-----~~~rv~~pSG--AiGGlD~l~aa-r~g~i~~V~lt 142 (255)
T COG1712 76 YVPKILKAGIDVIVMSVGALA-DEGL----RERLRELAKC-----GGARVYLPSG--AIGGLDALAAA-RVGGIEEVVLT 142 (255)
T ss_pred HhHHHHhcCCCEEEEechhcc-ChHH----HHHHHHHHhc-----CCcEEEecCc--cchhHHHHHHh-hcCCeeEEEEE
Confidence 9999999999655444 3442 3221 1111111111 1345554444 44444455443 33678999999
Q ss_pred EeecccccC
Q 023678 196 TYQAASGAG 204 (279)
Q Consensus 196 t~q~vSGaG 204 (279)
|.-....-|
T Consensus 143 trKpp~~lg 151 (255)
T COG1712 143 TRKPPAELG 151 (255)
T ss_pred eecChHHhC
Confidence 887776444
No 93
>PLN02427 UDP-apiose/xylose synthase
Probab=97.13 E-value=0.0028 Score=60.38 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=26.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.|||.|.||||++|+.|++.|.+++ ..+++.+.
T Consensus 14 ~~~VlVTGgtGfIGs~lv~~L~~~~--g~~V~~l~ 46 (386)
T PLN02427 14 PLTICMIGAGGFIGSHLCEKLMTET--PHKVLALD 46 (386)
T ss_pred CcEEEEECCcchHHHHHHHHHHhcC--CCEEEEEe
Confidence 4689999999999999999998872 23566553
No 94
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.11 E-value=0.00068 Score=61.51 Aligned_cols=95 Identities=9% Similarity=0.162 Sum_probs=58.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
|+||+||| .|.+|..+.+.|.+.+++..++..+ +++... +.+.... .+.+.+...+...++|+||.|++....+++
T Consensus 2 mm~I~iIG-~G~mG~~la~~l~~~g~~~~~v~v~-~r~~~~~~~~~~~~-g~~~~~~~~~~~~~advVil~v~~~~~~~v 78 (267)
T PRK11880 2 MKKIGFIG-GGNMASAIIGGLLASGVPAKDIIVS-DPSPEKRAALAEEY-GVRAATDNQEAAQEADVVVLAVKPQVMEEV 78 (267)
T ss_pred CCEEEEEe-chHHHHHHHHHHHhCCCCcceEEEE-cCCHHHHHHHHHhc-CCeecCChHHHHhcCCEEEEEcCHHHHHHH
Confidence 57899999 6999999999988765433444333 433211 1111100 122221112234678999999999888888
Q ss_pred HHHHHhC-CCEEEEcCCCCC
Q 023678 118 GPIAVEK-GSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~~a-G~~VIDlS~~~R 136 (279)
++.+... +..||.+++...
T Consensus 79 ~~~l~~~~~~~vvs~~~gi~ 98 (267)
T PRK11880 79 LSELKGQLDKLVVSIAAGVT 98 (267)
T ss_pred HHHHHhhcCCEEEEecCCCC
Confidence 7776543 567887777654
No 95
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.10 E-value=0.0024 Score=59.76 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEe--ecC-c-----cCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVE--ELT-E-----DSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~--~~d-~-----~~~~~~DvVf~a~ 109 (279)
||||.|.||||++|+.|++.|.++ ...+++.+. ++... ..+ .....+.+. |+. . +.+.++|+||.+.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~--~~~~V~~~~-r~~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~a 76 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILET--TDWEVYGMD-MQTDRLGDL-VNHPRMHFFEGDITINKEWIEYHVKKCDVILPLV 76 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhC--CCCeEEEEe-CcHHHHHHh-ccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECc
Confidence 368999999999999999999875 234566553 22110 001 011123332 321 1 1235789999764
Q ss_pred CCc------------------hhhhhHHHHHhCCCEEEEcCCC
Q 023678 110 GGS------------------ISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 110 g~~------------------~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
... -+..+++.+.+.|.++|=.|+.
T Consensus 77 a~~~~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~~~~v~~SS~ 119 (347)
T PRK11908 77 AIATPATYVKQPLRVFELDFEANLPIVRSAVKYGKHLVFPSTS 119 (347)
T ss_pred ccCChHHhhcCcHHHHHHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 311 0123345555677777767765
No 96
>PRK08655 prephenate dehydrogenase; Provisional
Probab=97.10 E-value=0.00086 Score=65.87 Aligned_cols=89 Identities=18% Similarity=0.321 Sum_probs=57.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+|+|++|.+|+.+.+.|.++++ ++..+ +++... ...... ....+.....+.+.++|+||+|+|.....+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~---~V~v~-~r~~~~~~~~a~~-~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl 75 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGF---EVIVT-GRDPKKGKEVAKE-LGVEYANDNIDAAKDADIVIISVPINVTEDVI 75 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCC---EEEEE-ECChHHHHHHHHH-cCCeeccCHHHHhccCCEEEEecCHHHHHHHH
Confidence 5899999999999999999988754 44444 332111 111100 01111110112356789999999988777776
Q ss_pred HHHH---hCCCEEEEcCC
Q 023678 119 PIAV---EKGSIVVDNSS 133 (279)
Q Consensus 119 ~~~~---~aG~~VIDlS~ 133 (279)
..+. ..|+.|+|.++
T Consensus 76 ~~l~~~l~~~~iViDvsS 93 (437)
T PRK08655 76 KEVAPHVKEGSLLMDVTS 93 (437)
T ss_pred HHHHhhCCCCCEEEEccc
Confidence 6654 47889999997
No 97
>PLN02775 Probable dihydrodipicolinate reductase
Probab=97.10 E-value=0.0028 Score=58.95 Aligned_cols=127 Identities=11% Similarity=0.040 Sum_probs=83.4
Q ss_pred ccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee--eCCceeEEeecC-cc-CC-----CCCc-
Q 023678 34 SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--FQDKAYTVEELT-ED-SF-----DGVD- 103 (279)
Q Consensus 34 ~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~--~~~~~~~v~~~d-~~-~~-----~~~D- 103 (279)
+...+.+||+|.||+|..|+++++.+.+ +.++|+....+...|..+. ..+..+.+...+ .+ .+ ...|
T Consensus 6 ~~~~~~i~V~V~Ga~G~MG~~~~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~ 82 (286)
T PLN02775 6 SPPGSAIPIMVNGCTGKMGHAVAEAAVS---AGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNL 82 (286)
T ss_pred CCcCCCCeEEEECCCChHHHHHHHHHhc---CCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCE
Confidence 3334468999999999999999999876 5788887766655554433 222244443111 11 11 2478
Q ss_pred EEEecCCCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHH
Q 023678 104 IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICL 177 (279)
Q Consensus 104 vVf~a~g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~ 177 (279)
+++.-+-+....+++..+++.|+.+|--+.-|- .++++.+... .+..++-.||-+--..+
T Consensus 83 VvIDFT~P~a~~~~~~~~~~~g~~~VvGTTG~~-------------~e~l~~~~~~-~~i~vv~apNfSiGv~l 142 (286)
T PLN02775 83 IVVDYTLPDAVNDNAELYCKNGLPFVMGTTGGD-------------RDRLLKDVEE-SGVYAVIAPQMGKQVVA 142 (286)
T ss_pred EEEECCChHHHHHHHHHHHHCCCCEEEECCCCC-------------HHHHHHHHhc-CCccEEEECcccHHHHH
Confidence 899999999999999999999998776666652 1222221111 14678888987654433
No 98
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.08 E-value=0.00094 Score=58.49 Aligned_cols=94 Identities=20% Similarity=0.297 Sum_probs=68.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHH-HcCCCCceEEEEEee--cCCCCceeeeCCceeEEeecC-ccC-C--CCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVL-SDRDFPYRSIKMLAS--KRSAGKQLSFQDKAYTVEELT-EDS-F--DGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL-~~~~~p~~~l~~l~s--~~s~G~~~~~~~~~~~v~~~d-~~~-~--~~~DvVf~a~g 110 (279)
++.+++|||+ |..|+.|+..- ..+ ..++++.+.. +...|+.+ .++.+.+++ .+. . .++|++++|+|
T Consensus 83 ~~tnviiVG~-GnlG~All~Y~f~~~--~~~~iv~~FDv~~~~VG~~~----~~v~V~~~d~le~~v~~~dv~iaiLtVP 155 (211)
T COG2344 83 KTTNVIIVGV-GNLGRALLNYNFSKK--NGMKIVAAFDVDPDKVGTKI----GDVPVYDLDDLEKFVKKNDVEIAILTVP 155 (211)
T ss_pred cceeEEEEcc-ChHHHHHhcCcchhh--cCceEEEEecCCHHHhCccc----CCeeeechHHHHHHHHhcCccEEEEEcc
Confidence 4689999995 99999998763 223 5567776543 23445443 246777765 222 2 38999999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCCCCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~~R~~ 138 (279)
...+.+.++.+.++|++-|=+-++-|+.
T Consensus 156 a~~AQ~vad~Lv~aGVkGIlNFtPv~l~ 183 (211)
T COG2344 156 AEHAQEVADRLVKAGVKGILNFTPVRLQ 183 (211)
T ss_pred HHHHHHHHHHHHHcCCceEEeccceEec
Confidence 9999999999999999988666666654
No 99
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=97.07 E-value=0.0036 Score=60.33 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=27.6
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++++|.|+||||++|+.+++.|.++++ +++.+.
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~G~---~V~~l~ 91 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRRGY---NVVAVA 91 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---EEEEEE
Confidence 3467999999999999999999998754 455553
No 100
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=97.03 E-value=0.00048 Score=62.43 Aligned_cols=96 Identities=14% Similarity=0.183 Sum_probs=57.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
|||+||| +|.+|+.+++.|.+.++.... +.+.++ +..+ .+........+.+...+...++|+||+|++.....++
T Consensus 1 m~IgiIG-~G~mG~aia~~L~~~g~~~~~-i~v~~r-~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~~~v 77 (258)
T PRK06476 1 MKIGFIG-TGAITEAMVTGLLTSPADVSE-IIVSPR-NAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIAEEV 77 (258)
T ss_pred CeEEEEC-cCHHHHHHHHHHHhCCCChhe-EEEECC-CHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHHHHH
Confidence 4799999 899999999999877543223 333333 2211 1111000122221111224578999999998777776
Q ss_pred HHHH-HhCCCEEEEcCCCCCCC
Q 023678 118 GPIA-VEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 118 ~~~~-~~aG~~VIDlS~~~R~~ 138 (279)
++.+ ...|..||+..+....+
T Consensus 78 l~~l~~~~~~~vis~~ag~~~~ 99 (258)
T PRK06476 78 LRALRFRPGQTVISVIAATDRA 99 (258)
T ss_pred HHHhccCCCCEEEEECCCCCHH
Confidence 6554 24677889888776543
No 101
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=97.01 E-value=0.0014 Score=61.00 Aligned_cols=92 Identities=16% Similarity=0.239 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.+||+||| .|.+|..+.+.|.+.++. .++..+ +++..-. .....+....+.....+.+.++|+||.|++.....++
T Consensus 6 ~~~I~IIG-~G~mG~sla~~l~~~g~~-~~V~~~-dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v 82 (307)
T PRK07502 6 FDRVALIG-IGLIGSSLARAIRRLGLA-GEIVGA-DRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAV 82 (307)
T ss_pred CcEEEEEe-eCHHHHHHHHHHHhcCCC-cEEEEE-ECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 36899999 799999999999877532 244444 3332100 0000110011111112235689999999998776666
Q ss_pred HHHH---HhCCCEEEEcCC
Q 023678 118 GPIA---VEKGSIVVDNSS 133 (279)
Q Consensus 118 ~~~~---~~aG~~VIDlS~ 133 (279)
...+ +..|..|+|.++
T Consensus 83 ~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 83 AAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred HHHHHhhCCCCCEEEeCcc
Confidence 5544 356888999876
No 102
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.99 E-value=0.0016 Score=62.06 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=26.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.+||.|.||||++|+.|++.|.+++| ++..+.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~---~V~~v~ 52 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGH---YIIASD 52 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCC---EEEEEE
Confidence 47999999999999999999998865 455553
No 103
>PRK08507 prephenate dehydrogenase; Validated
Probab=96.94 E-value=0.0013 Score=60.30 Aligned_cols=90 Identities=9% Similarity=0.137 Sum_probs=55.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
|||+||| .|.+|+.+.+.|.+.+++ .++..+ +++.... .....+...... +..++.++|+||+|++.....+.+
T Consensus 1 m~I~iIG-~G~mG~sla~~l~~~g~~-~~v~~~-d~~~~~~~~~~~~g~~~~~~--~~~~~~~aD~Vilavp~~~~~~~~ 75 (275)
T PRK08507 1 MKIGIIG-LGLMGGSLGLALKEKGLI-SKVYGY-DHNELHLKKALELGLVDEIV--SFEELKKCDVIFLAIPVDAIIEIL 75 (275)
T ss_pred CEEEEEc-cCHHHHHHHHHHHhcCCC-CEEEEE-cCCHHHHHHHHHCCCCcccC--CHHHHhcCCEEEEeCcHHHHHHHH
Confidence 4899999 799999999999887652 344333 3321110 000011000111 222233589999999998887777
Q ss_pred HHHH--hCCCEEEEcCCC
Q 023678 119 PIAV--EKGSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~--~aG~~VIDlS~~ 134 (279)
..+. ..|..|+|.++.
T Consensus 76 ~~l~~l~~~~iv~d~gs~ 93 (275)
T PRK08507 76 PKLLDIKENTTIIDLGST 93 (275)
T ss_pred HHHhccCCCCEEEECccc
Confidence 7664 468899998774
No 104
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.94 E-value=0.0014 Score=54.60 Aligned_cols=72 Identities=19% Similarity=0.378 Sum_probs=47.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEeecCccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
|||+|+||+|.||..+.-.|...++ ..+++++..... .|..... ......+..-+.+++.++|+|+++.|.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l-~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGL-ADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTT-SSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 6999999999999999999988742 345766643321 1221111 112344444345678899999999875
Q ss_pred c
Q 023678 112 S 112 (279)
Q Consensus 112 ~ 112 (279)
.
T Consensus 80 ~ 80 (141)
T PF00056_consen 80 P 80 (141)
T ss_dssp S
T ss_pred c
Confidence 3
No 105
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.92 E-value=0.0066 Score=54.29 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++|.|+||||++|+.+++.|.++++ ++.++
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~---~V~~~ 47 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGF---AVKAG 47 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCC---EEEEE
Confidence 57999999999999999999988754 44444
No 106
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.91 E-value=0.00035 Score=59.19 Aligned_cols=88 Identities=13% Similarity=0.260 Sum_probs=49.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCCceeEEeecCcc-CCCCCcEEEecCCCchh-h
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTED-SFDGVDIALFSAGGSIS-K 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~~~~~v~~~d~~-~~~~~DvVf~a~g~~~s-~ 115 (279)
|+||++|| .|..|+.+.+.|.+++| ++... .++. .-+.+...+ ....+ ++. ...++|+||.|++...+ +
T Consensus 1 m~~Ig~IG-lG~mG~~~a~~L~~~g~---~v~~~-d~~~~~~~~~~~~g--~~~~~-s~~e~~~~~dvvi~~v~~~~~v~ 72 (163)
T PF03446_consen 1 MMKIGFIG-LGNMGSAMARNLAKAGY---EVTVY-DRSPEKAEALAEAG--AEVAD-SPAEAAEQADVVILCVPDDDAVE 72 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTT---EEEEE-ESSHHHHHHHHHTT--EEEES-SHHHHHHHBSEEEE-SSSHHHHH
T ss_pred CCEEEEEc-hHHHHHHHHHHHHhcCC---eEEee-ccchhhhhhhHHhh--hhhhh-hhhhHhhcccceEeecccchhhh
Confidence 57999999 79999999999998765 44444 3321 111111111 22222 222 23578999999998654 3
Q ss_pred hhHHH--H---HhCCCEEEEcCCC
Q 023678 116 KFGPI--A---VEKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~~~--~---~~aG~~VIDlS~~ 134 (279)
+.... + +..|..+||.|..
T Consensus 73 ~v~~~~~i~~~l~~g~iiid~sT~ 96 (163)
T PF03446_consen 73 AVLFGENILAGLRPGKIIIDMSTI 96 (163)
T ss_dssp HHHHCTTHGGGS-TTEEEEE-SS-
T ss_pred hhhhhhHHhhccccceEEEecCCc
Confidence 44332 2 3568888988875
No 107
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=96.88 E-value=0.0065 Score=57.00 Aligned_cols=71 Identities=23% Similarity=0.394 Sum_probs=44.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc----eeee------CCceeEEee-cCccCCCCCcEEEec
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK----QLSF------QDKAYTVEE-LTEDSFDGVDIALFS 108 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~----~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a 108 (279)
|||+|+||||++|..++..|...++ ..+++++.......+ .... .+....+.. .+.+++.++|+||+|
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~-~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDV-VKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCC-CCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEe
Confidence 6899999999999999999998843 235666643221111 1111 111122321 123457899999999
Q ss_pred CCC
Q 023678 109 AGG 111 (279)
Q Consensus 109 ~g~ 111 (279)
.|.
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 984
No 108
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.88 E-value=0.0079 Score=51.76 Aligned_cols=108 Identities=19% Similarity=0.267 Sum_probs=68.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|+.+++|..+.+.|.+++. ++..+ .|+. .++ .+.+.++|+||+|++... -+
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~---~V~v~-~r~~--------------~~l-~~~l~~aDiVIsat~~~~--ii 101 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNA---TVTVC-HSKT--------------KNL-KEHTKQADIVIVAVGKPG--LV 101 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCC---EEEEE-ECCc--------------hhH-HHHHhhCCEEEEcCCCCc--ee
Confidence 357999999866789999999988742 43333 3321 011 123568999999998754 23
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
-....+.|..|||++.+.-.|....-+...++.+.++.. ...+...||=
T Consensus 102 ~~~~~~~~~viIDla~prdvd~~~~~~~G~~d~~~~~~~-----~~~~~~~pgg 150 (168)
T cd01080 102 KGDMVKPGAVVIDVGINRVPDKSGGKLVGDVDFESAKEK-----ASAITPVPGG 150 (168)
T ss_pred cHHHccCCeEEEEccCCCcccccCCCeeCCcCHHHHHhh-----ccCcCCCCCc
Confidence 344567789999999875333111235667777776642 2344555553
No 109
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=96.87 E-value=0.0028 Score=56.11 Aligned_cols=94 Identities=17% Similarity=0.215 Sum_probs=64.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeeeCCceeEEeecC-ccC-C--CCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQDKAYTVEELT-EDS-F--DGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~~~~~~~v~~~d-~~~-~--~~~DvVf~a~g~~ 112 (279)
..+|+|+| .|.+|+.+.+.+... .+.++++.+.+.+. .|+.+ .+ ..+...+ ..+ + .++|+|+.|+|..
T Consensus 84 ~~rV~IIG-aG~iG~~l~~~~~~~-~~g~~ivgv~D~d~~~~~~~i--~g--~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 84 TWNVALVG-AGNLGRALLNYNGFE-KRGFKIVAAFDVDPEKIGTKI--GG--IPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred CcEEEEEC-CCHHHHHHHHhhhcc-cCCcEEEEEEECChhhcCCEe--CC--eEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 46899999 699999999875422 25678888776532 22222 11 2222221 111 2 3699999999999
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCCCCC
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~R~~ 138 (279)
...++...+.++|++.|.+-.++.++
T Consensus 158 ~~~~i~~~l~~~Gi~~il~~~p~~~~ 183 (213)
T PRK05472 158 AAQEVADRLVEAGIKGILNFAPVRLS 183 (213)
T ss_pred hHHHHHHHHHHcCCCEEeecCceeec
Confidence 99999999999999888776776653
No 110
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.86 E-value=0.0018 Score=53.52 Aligned_cols=91 Identities=16% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-Cc---eeEEeecCccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DK---AYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~~---~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
..+|+|+|+ |.+|+.+.+.|.+++ ..++..+ +++.. .+..... +. .....+. .+.+.++|+|+.|++...
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g--~~~v~v~-~r~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dvvi~~~~~~~ 93 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG--AAKIVIV-NRTLEKAKALAERFGELGIAIAYLDL-EELLAEADLIINTTPVGM 93 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC--CCEEEEE-cCCHHHHHHHHHHHhhcccceeecch-hhccccCCEEEeCcCCCC
Confidence 468999996 999999999998763 2344444 33211 1111100 10 1112221 122578999999999876
Q ss_pred h----hhhHHHHHhCCCEEEEcCCC
Q 023678 114 S----KKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 114 s----~~~~~~~~~aG~~VIDlS~~ 134 (279)
. ..+.....+.|..|+|++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~D~~~~ 118 (155)
T cd01065 94 KPGDELPLPPSLLKPGGVVYDVVYN 118 (155)
T ss_pred CCCCCCCCCHHHcCCCCEEEEcCcC
Confidence 3 23334456789999999764
No 111
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=96.83 E-value=0.016 Score=52.74 Aligned_cols=163 Identities=11% Similarity=0.112 Sum_probs=86.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
..|||+||| .|..|+.+++.|.++++.. .++... .++ ..+ . .......+.+...++|+||+|++.....+
T Consensus 2 ~~mkI~iIG-~G~mG~ai~~~l~~~~~~~~~~i~~~-~~~-~~~-~-----~~~~~~~~~~~~~~~D~Vilavkp~~~~~ 72 (260)
T PTZ00431 2 ENIRVGFIG-LGKMGSALAYGIENSNIIGKENIYYH-TPS-KKN-T-----PFVYLQSNEELAKTCDIIVLAVKPDLAGK 72 (260)
T ss_pred CCCEEEEEC-ccHHHHHHHHHHHhCCCCCcceEEEE-CCC-hhc-C-----CeEEeCChHHHHHhCCEEEEEeCHHHHHH
Confidence 347999999 6999999999998875322 233333 222 111 1 11111111122457899999999988888
Q ss_pred hHHHHHh---CCCEEEEcCCCCCCCC-------C--CceeeccCCHHhhhccccCCCCCcEEE-CCCChHHHHHHhhhch
Q 023678 117 FGPIAVE---KGSIVVDNSSAFRMVE-------N--VPLVIPEVNPEAMSGIKVGMGKGALIA-NPNCSTIICLMAATPL 183 (279)
Q Consensus 117 ~~~~~~~---aG~~VIDlS~~~R~~~-------~--vplvvPevN~~~i~~~~~~~~~~~iVa-nPgC~tt~l~laL~PL 183 (279)
++..+.. .+..|-|.++ ...+. . +.-.+|... ..+.. ...++. +.++...... .+.-|
T Consensus 73 vl~~i~~~l~~~~iIS~~aG-i~~~~l~~~~~~~~~vvr~mPn~p-~~~g~------g~t~i~~~~~~~~~~~~-~v~~l 143 (260)
T PTZ00431 73 VLLEIKPYLGSKLLISICGG-LNLKTLEEMVGVEAKIVRVMPNTP-SLVGQ------GSLVFCANNNVDSTDKK-KVIDI 143 (260)
T ss_pred HHHHHHhhccCCEEEEEeCC-ccHHHHHHHcCCCCeEEEECCCch-hHhcc------eeEEEEeCCCCCHHHHH-HHHHH
Confidence 8776653 3334445444 32221 0 112344443 22221 222332 2333333322 23334
Q ss_pred hhhcCc-cEE---EEEEeecccccChhhHHHHHHHHHHH
Q 023678 184 HRRAKV-TRM---VVSTYQAASGAGAAAMEELELQTREV 218 (279)
Q Consensus 184 ~~~~~i-~~v---~vtt~q~vSGaG~~~~~El~~qt~~l 218 (279)
++..+. .++ .++++.++||.|=+-+-.+.+.+.++
T Consensus 144 ~~~~G~~~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~ 182 (260)
T PTZ00431 144 FSACGIIQEIKEKDMDIATAISGCGPAYVFLFIESLIDA 182 (260)
T ss_pred HHhCCcEEEEChHHcchhhhhcCCHHHHHHHHHHHHHHH
Confidence 443332 222 57888999999977665555555544
No 112
>PRK12320 hypothetical protein; Provisional
Probab=96.82 E-value=0.0032 Score=65.31 Aligned_cols=90 Identities=18% Similarity=0.148 Sum_probs=54.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc----cCCCCCcEEEecCCCch--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE----DSFDGVDIALFSAGGSI-- 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~----~~~~~~DvVf~a~g~~~-- 113 (279)
|||.|.||||++|+.|++.|.+++| ++..+. +.... ......++...|+.. +.+.++|+||.+.+...
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~---~Vi~ld-r~~~~--~~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~~~~~ 74 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGH---TVSGIA-QHPHD--ALDPRVDYVCASLRNPVLQELAGEADAVIHLAPVDTSA 74 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC---EEEEEe-CChhh--cccCCceEEEccCCCHHHHHHhcCCCEEEEcCccCccc
Confidence 4899999999999999999988764 445553 22111 000111111112221 12457899999986431
Q ss_pred --------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 114 --------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 114 --------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
+..++..+.+.|+++|=.|+..
T Consensus 75 ~~~vNv~Gt~nLleAA~~~GvRiV~~SS~~ 104 (699)
T PRK12320 75 PGGVGITGLAHVANAAARAGARLLFVSQAA 104 (699)
T ss_pred hhhHHHHHHHHHHHHHHHcCCeEEEEECCC
Confidence 2334555667898888777653
No 113
>PRK07680 late competence protein ComER; Validated
Probab=96.81 E-value=0.0016 Score=59.63 Aligned_cols=95 Identities=11% Similarity=0.140 Sum_probs=57.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC-CceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF-PYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~-p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
|+|+||| .|.+|+.+++.|.+.++ +..++. +.+|+... ..+......+.+.....+...++|+||+|++.....++
T Consensus 1 m~I~iIG-~G~mG~ala~~L~~~g~~~~~~v~-v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~v 78 (273)
T PRK07680 1 MNIGFIG-TGNMGTILIEAFLESGAVKPSQLT-ITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPL 78 (273)
T ss_pred CEEEEEC-ccHHHHHHHHHHHHCCCCCcceEE-EECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHH
Confidence 4799999 69999999999987753 222333 33443211 11110000122221111224678999999998877777
Q ss_pred HHHHH---hCCCEEEEcCCCCC
Q 023678 118 GPIAV---EKGSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~---~aG~~VIDlS~~~R 136 (279)
++.+. ..+..|||+++...
T Consensus 79 l~~l~~~l~~~~~iis~~ag~~ 100 (273)
T PRK07680 79 LQKLAPHLTDEHCLVSITSPIS 100 (273)
T ss_pred HHHHHhhcCCCCEEEEECCCCC
Confidence 76543 45778999998654
No 114
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.74 E-value=0.0039 Score=58.96 Aligned_cols=72 Identities=22% Similarity=0.387 Sum_probs=44.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCC----CCceeeeCC------ceeEEeecC-ccCCCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQD------KAYTVEELT-EDSFDGVD 103 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s----~G~~~~~~~------~~~~v~~~d-~~~~~~~D 103 (279)
..||+|+||+|+||+.++..|..++. ...+++++..... .|..+...+ .++.+. -+ .+++.++|
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~-~~~~~~l~~aD 80 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVAT-TDPEEAFKDVD 80 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceec-CCHHHHhCCCC
Confidence 47899999999999999999987632 1137777743221 222221111 011111 12 24578999
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+||.+.|.
T Consensus 81 iVI~tAG~ 88 (325)
T cd01336 81 VAILVGAM 88 (325)
T ss_pred EEEEeCCc
Confidence 99999875
No 115
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.71 E-value=0.0091 Score=56.03 Aligned_cols=95 Identities=15% Similarity=0.202 Sum_probs=63.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|+|||.+|.+|+-+..+|.+++ ..+....++.. ++ +....+|+||.|+|... .+
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~g---atVtv~~~~t~-----------------~l~e~~~~ADIVIsavg~~~--~v 216 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAH---CSVTVVHSRST-----------------DAKALCRQADIVVAAVGRPR--LI 216 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC---CEEEEECCCCC-----------------CHHHHHhcCCEEEEecCChh--cc
Confidence 5799999988999999999998874 34444433211 11 22467899999998763 34
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+..++.|+.|||.|-.+-.+++-.-++-.++.+....
T Consensus 217 ~~~~ik~GaiVIDvgin~~~~~g~~kl~GDvdf~~~~~ 254 (301)
T PRK14194 217 DADWLKPGAVVIDVGINRIDDDGRSRLVGDVDFDSALP 254 (301)
T ss_pred cHhhccCCcEEEEecccccCCCCCcceecccchHHHHh
Confidence 44557899999999866521112113556677665553
No 116
>PLN00016 RNA-binding protein; Provisional
Probab=96.69 E-value=0.0075 Score=57.47 Aligned_cols=92 Identities=13% Similarity=0.153 Sum_probs=54.1
Q ss_pred CCEEEEE----CcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-----------eCCceeEEeecC-cc-CC--
Q 023678 39 APSVAVV----GVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----------FQDKAYTVEELT-ED-SF-- 99 (279)
Q Consensus 39 ~~kVaIi----GATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-----------~~~~~~~v~~~d-~~-~~-- 99 (279)
++||.|+ ||||++|+.|++.|.+.+| ++..+.........+. ..+......|++ .. .+
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~---~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~~~ 128 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGH---EVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKVAG 128 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCC---EEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhhcc
Confidence 4789999 9999999999999998765 5555543222111110 011111122322 11 12
Q ss_pred CCCcEEEecCCCch--hhhhHHHHHhCCC-EEEEcCC
Q 023678 100 DGVDIALFSAGGSI--SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 100 ~~~DvVf~a~g~~~--s~~~~~~~~~aG~-~VIDlS~ 133 (279)
.++|+||.+.+... .+.+++.+.+.|+ ++|=.|+
T Consensus 129 ~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS 165 (378)
T PLN00016 129 AGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSS 165 (378)
T ss_pred CCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcc
Confidence 47899999876543 3455666667888 4664554
No 117
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.68 E-value=0.0028 Score=58.78 Aligned_cols=91 Identities=11% Similarity=0.186 Sum_probs=55.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCC--------c----eeEEeecCc-cCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQD--------K----AYTVEELTE-DSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~--------~----~~~v~~~d~-~~~~~~Dv 104 (279)
||||+|+| .|.+|..+...|.+.+| ++..+ .+.. .-..+...+ . ..... .+. +...++|+
T Consensus 1 mmkI~iiG-~G~mG~~~a~~L~~~g~---~V~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~ 74 (325)
T PRK00094 1 MMKIAVLG-AGSWGTALAIVLARNGH---DVTLW-ARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAEALADADL 74 (325)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHHHHhCCCE
Confidence 36899999 69999999999988765 33334 3321 000011000 0 11111 122 23468999
Q ss_pred EEecCCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 105 ALFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 105 Vf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
||+|++.....+.+..+. ..|..|||++..+
T Consensus 75 vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv 108 (325)
T PRK00094 75 ILVAVPSQALREVLKQLKPLLPPDAPIVWATKGI 108 (325)
T ss_pred EEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecc
Confidence 999999876666655544 4577899998544
No 118
>PLN02712 arogenate dehydrogenase
Probab=96.68 E-value=0.0034 Score=64.84 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=56.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccC-C-CCCcEEEecCCCchhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-F-DGVDIALFSAGGSISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~-~-~~~DvVf~a~g~~~s~ 115 (279)
+++||+||| .|.+|+.+.+.|.+.++ ++..+ +++.........+ .... .+.++ . ..+|+||+|++.....
T Consensus 368 ~~~kIgIIG-lG~mG~slA~~L~~~G~---~V~~~-dr~~~~~~a~~~G--v~~~-~~~~el~~~~aDvVILavP~~~~~ 439 (667)
T PLN02712 368 SKLKIAIVG-FGNFGQFLAKTMVKQGH---TVLAY-SRSDYSDEAQKLG--VSYF-SDADDLCEEHPEVILLCTSILSTE 439 (667)
T ss_pred CCCEEEEEe-cCHHHHHHHHHHHHCcC---EEEEE-ECChHHHHHHHcC--CeEe-CCHHHHHhcCCCEEEECCChHHHH
Confidence 458999999 79999999999987643 55544 3332111100011 1111 11122 2 2589999999988777
Q ss_pred hhHHHHH----hCCCEEEEcCCC
Q 023678 116 KFGPIAV----EKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~~~~~----~aG~~VIDlS~~ 134 (279)
+++..+. +.|+.|+|.++.
T Consensus 440 ~vi~~l~~~~lk~g~ivvDv~Sv 462 (667)
T PLN02712 440 KVLKSLPFQRLKRSTLFVDVLSV 462 (667)
T ss_pred HHHHHHHHhcCCCCcEEEECCCc
Confidence 7666543 358999999876
No 119
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=96.63 E-value=0.0023 Score=59.00 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=53.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~ 116 (279)
++||+||| .|.+|+.+.+.|.+.+| ++... +++... ..+...+ ..+.+ +. +.+.++|+||+|++.....+
T Consensus 2 ~~~IgviG-~G~mG~~~a~~l~~~g~---~v~~~-d~~~~~~~~~~~~g--~~~~~-~~~e~~~~~d~vi~~vp~~~~~~ 73 (296)
T PRK11559 2 TMKVGFIG-LGIMGKPMSKNLLKAGY---SLVVY-DRNPEAVAEVIAAG--AETAS-TAKAVAEQCDVIITMLPNSPHVK 73 (296)
T ss_pred CceEEEEc-cCHHHHHHHHHHHHCCC---eEEEE-cCCHHHHHHHHHCC--CeecC-CHHHHHhcCCEEEEeCCCHHHHH
Confidence 36899999 79999999999988754 44433 332110 1111111 11211 11 23467999999999654433
Q ss_pred hH-------HHHHhCCCEEEEcCCCC
Q 023678 117 FG-------PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~-------~~~~~aG~~VIDlS~~~ 135 (279)
.+ ......|..|||.|+..
T Consensus 74 ~v~~~~~~~~~~~~~g~iiid~st~~ 99 (296)
T PRK11559 74 EVALGENGIIEGAKPGTVVIDMSSIA 99 (296)
T ss_pred HHHcCcchHhhcCCCCcEEEECCCCC
Confidence 22 12235788999988754
No 120
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.62 E-value=0.0067 Score=57.44 Aligned_cols=68 Identities=22% Similarity=0.430 Sum_probs=42.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--e---ee-eC--CceeEEe--ecC-cc----CCCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--Q---LS-FQ--DKAYTVE--ELT-ED----SFDGV 102 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~---~~-~~--~~~~~v~--~~d-~~----~~~~~ 102 (279)
.+++|.|-|||||+|+.+++.|+++|| +++... |+.+. . +. +. ...+.+. |+. .. .+.+|
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY---~V~gtV--R~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gc 79 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGY---TVRGTV--RDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGC 79 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCC---EEEEEE--cCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCC
Confidence 357999999999999999999999965 344443 22222 1 11 11 1123333 322 22 35799
Q ss_pred cEEEecCC
Q 023678 103 DIALFSAG 110 (279)
Q Consensus 103 DvVf~a~g 110 (279)
|.||.++.
T Consensus 80 dgVfH~As 87 (327)
T KOG1502|consen 80 DGVFHTAS 87 (327)
T ss_pred CEEEEeCc
Confidence 99999864
No 121
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.61 E-value=0.0033 Score=55.91 Aligned_cols=68 Identities=24% Similarity=0.312 Sum_probs=43.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc----CCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED----SFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~----~~~~~DvVf~a~g~ 111 (279)
++|.|.||||++|+.+++.|.++++ ++++++.+...-.... .+.+....++. .. .+.++|.++++.+.
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~---~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~ 73 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGH---EVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGL 73 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCC---EEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEecc
Confidence 5799999999999999999998843 4555543322222222 33344444443 22 24689999888873
No 122
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.58 E-value=0.0067 Score=56.52 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=53.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.|||+|+| +|..|+.+.+.|.+.+| ++... +|+... ++ .+...++|+||+|++....+..+
T Consensus 4 ~m~I~iiG-~G~~G~~lA~~l~~~G~---~V~~~-~r~~~~-------------~~-~~~~~~advvi~~vp~~~~~~v~ 64 (308)
T PRK14619 4 PKTIAILG-AGAWGSTLAGLASANGH---RVRVW-SRRSGL-------------SL-AAVLADADVIVSAVSMKGVRPVA 64 (308)
T ss_pred CCEEEEEC-ccHHHHHHHHHHHHCCC---EEEEE-eCCCCC-------------CH-HHHHhcCCEEEEECChHHHHHHH
Confidence 47899999 79999999999988765 34333 333210 11 12245789999999998777766
Q ss_pred HHHH----hCCCEEEEcCCC
Q 023678 119 PIAV----EKGSIVVDNSSA 134 (279)
Q Consensus 119 ~~~~----~aG~~VIDlS~~ 134 (279)
+.+. ..|..|||.+..
T Consensus 65 ~~l~~~~~~~~~ivi~~s~g 84 (308)
T PRK14619 65 EQVQALNLPPETIIVTATKG 84 (308)
T ss_pred HHHHHhcCCCCcEEEEeCCc
Confidence 6553 347889998753
No 123
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=96.58 E-value=0.0096 Score=53.54 Aligned_cols=63 Identities=16% Similarity=0.299 Sum_probs=38.2
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeec----CccCCCCCcEEEecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL----TEDSFDGVDIALFSAGG 111 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~----d~~~~~~~DvVf~a~g~ 111 (279)
|.|.||||++|+.+++.|.+.+ .+++.+. |+........ ...+.+. ....+.++|+||.|++.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g---~~V~~~~-r~~~~~~~~~---~~~~~~~~~~~~~~~~~~~D~Vvh~a~~ 67 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDG---HEVTILT-RSPPAGANTK---WEGYKPWAPLAESEALEGADAVINLAGE 67 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcC---CEEEEEe-CCCCCCCccc---ceeeecccccchhhhcCCCCEEEECCCC
Confidence 5799999999999999998874 3566664 3222111100 0011111 12345689999998864
No 124
>PRK06545 prephenate dehydrogenase; Validated
Probab=96.56 E-value=0.0042 Score=59.29 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=54.8
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee--cC-ccCCCCCcEEEecCCCchhhhh
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE--LT-EDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~--~d-~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+|+||| +|.+|+.+.+.|.+++++ +. .+...+.........+... +.+ .+ .+...++|+||+|+|.....++
T Consensus 2 ~I~iIG-~GliG~siA~~L~~~G~~-v~--i~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~aDlVilavP~~~~~~v 76 (359)
T PRK06545 2 TVLIVG-LGLIGGSLALAIKAAGPD-VF--IIGYDPSAAQLARALGFGV-IDELAADLQRAAAEADLIVLAVPVDATAAL 76 (359)
T ss_pred eEEEEE-eCHHHHHHHHHHHhcCCC-eE--EEEeCCCHHHHHHHhcCCC-CcccccCHHHHhcCCCEEEEeCCHHHHHHH
Confidence 699999 799999999999887652 33 2322111111000000000 001 01 1234689999999999887777
Q ss_pred HHHHHh----CCCEEEEcCCC
Q 023678 118 GPIAVE----KGSIVVDNSSA 134 (279)
Q Consensus 118 ~~~~~~----aG~~VIDlS~~ 134 (279)
..++.. .|+.|.|.++-
T Consensus 77 l~~l~~~~l~~~~ivtDv~Sv 97 (359)
T PRK06545 77 LAELADLELKPGVIVTDVGSV 97 (359)
T ss_pred HHHHhhcCCCCCcEEEeCccc
Confidence 776653 57889998875
No 125
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.55 E-value=0.0022 Score=61.14 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=56.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCC-CceeeeC-CceeEEeecCccCCCCCcEEEecC----C
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSA-GKQLSFQ-DKAYTVEELTEDSFDGVDIALFSA----G 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~-G~~~~~~-~~~~~v~~~d~~~~~~~DvVf~a~----g 110 (279)
+.+||+|+|+ |+ |+..++.+.+. | .++++.+.++... .+..... +.. .+.+++ +.+.+.|+++.++ +
T Consensus 2 ~~~rVgViG~-~~-G~~h~~al~~~--~~~~eLvaV~d~~~erA~~~A~~~gi~-~y~~~e-ell~d~Di~~V~ipt~~P 75 (343)
T TIGR01761 2 DVQSVVVCGT-RF-GQFYLAAFAAA--PERFELAGILAQGSERSRALAHRLGVP-LYCEVE-ELPDDIDIACVVVRSAIV 75 (343)
T ss_pred CCcEEEEEeH-HH-HHHHHHHHHhC--CCCcEEEEEEcCCHHHHHHHHHHhCCC-ccCCHH-HHhcCCCEEEEEeCCCCC
Confidence 3589999997 76 88899988876 6 7999999876432 1111110 111 122222 2234556665554 4
Q ss_pred CchhhhhHHHHHhCCCEEE
Q 023678 111 GSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VI 129 (279)
+....+++.+++++|+.|+
T Consensus 76 ~~~H~e~a~~aL~aGkHVL 94 (343)
T TIGR01761 76 GGQGSALARALLARGIHVL 94 (343)
T ss_pred CccHHHHHHHHHhCCCeEE
Confidence 5678899999999999887
No 126
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=96.55 E-value=0.0045 Score=58.03 Aligned_cols=97 Identities=18% Similarity=0.264 Sum_probs=56.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC-CceeEEeecC--ccCCCCCcEEEecCCCch
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ-DKAYTVEELT--EDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~-~~~~~v~~~d--~~~~~~~DvVf~a~g~~~ 113 (279)
...+|+|+|+ |.+|+.+++.|..++ ..++. +.+++.. ...+... +. .+.+.+ .+.+.++|+||.|++...
T Consensus 177 ~~~~V~ViGa-G~iG~~~a~~L~~~g--~~~V~-v~~r~~~ra~~la~~~g~--~~~~~~~~~~~l~~aDvVi~at~~~~ 250 (311)
T cd05213 177 KGKKVLVIGA-GEMGELAAKHLAAKG--VAEIT-IANRTYERAEELAKELGG--NAVPLDELLELLNEADVVISATGAPH 250 (311)
T ss_pred cCCEEEEECc-HHHHHHHHHHHHHcC--CCEEE-EEeCCHHHHHHHHHHcCC--eEEeHHHHHHHHhcCCEEEECCCCCc
Confidence 3579999995 999999999998753 23333 3343221 1111110 11 122221 123467899999999876
Q ss_pred hhhhHHHHHh----CCCEEEEcCCCCCCCCC
Q 023678 114 SKKFGPIAVE----KGSIVVDNSSAFRMVEN 140 (279)
Q Consensus 114 s~~~~~~~~~----aG~~VIDlS~~~R~~~~ 140 (279)
..+....+.+ .+..+||++-+--.+++
T Consensus 251 ~~~~~~~~~~~~~~~~~~viDlavPrdi~~~ 281 (311)
T cd05213 251 YAKIVERAMKKRSGKPRLIVDLAVPRDIEPE 281 (311)
T ss_pred hHHHHHHHHhhCCCCCeEEEEeCCCCCCchh
Confidence 6444444432 46789999965434444
No 127
>PRK10206 putative oxidoreductase; Provisional
Probab=96.55 E-value=0.0037 Score=59.34 Aligned_cols=88 Identities=13% Similarity=0.162 Sum_probs=56.4
Q ss_pred CCEEEEECcCcHHHH-HHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCC--CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQ-EFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSF--DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~-eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~--~~~DvVf~a~g~~~s 114 (279)
++|||||| .|.+++ ..+..+... .+.++++++.++...-...........+ .+++ +.+ .++|+|+.|+|+...
T Consensus 1 ~irvgiiG-~G~~~~~~h~~~~~~~-~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~-ell~~~~iD~V~I~tp~~~H 77 (344)
T PRK10206 1 VINCAFIG-FGKSTTRYHLPYVLNR-KDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLD-EVLNDPDVKLVVVCTHADSH 77 (344)
T ss_pred CeEEEEEC-CCHHHhheehhhHhcC-CCCEEEEEEEcCChhHHHHHHhcCCCcccCCHH-HHhcCCCCCEEEEeCCchHH
Confidence 47999999 688765 345655332 2679999988764311111100001112 2222 112 368999999999999
Q ss_pred hhhHHHHHhCCCEEE
Q 023678 115 KKFGPIAVEKGSIVV 129 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI 129 (279)
.+++.+++++|..|+
T Consensus 78 ~~~~~~al~aGkhVl 92 (344)
T PRK10206 78 FEYAKRALEAGKNVL 92 (344)
T ss_pred HHHHHHHHHcCCcEE
Confidence 999999999999766
No 128
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.53 E-value=0.0036 Score=51.52 Aligned_cols=89 Identities=16% Similarity=0.319 Sum_probs=54.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eee--eCCceeEEeecCc--cCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS--FQDKAYTVEELTE--DSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~--~~~~~~~v~~~d~--~~~~~~DvVf~a~g~~ 112 (279)
..+|.|+|| |-+|+.++..|..++. -++..+ .| +..+ .+. +.+..+.+..++. ..+.++|+||.|++.+
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~g~--~~i~i~-nR-t~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAALGA--KEITIV-NR-TPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSG 86 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHTTS--SEEEEE-ES-SHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTT
T ss_pred CCEEEEECC-HHHHHHHHHHHHHcCC--CEEEEE-EC-CHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCC
Confidence 579999996 8899999999988743 344444 33 2222 111 1223344555442 2246899999999987
Q ss_pred hhhhhHHHHHhCC----CEEEEcCC
Q 023678 113 ISKKFGPIAVEKG----SIVVDNSS 133 (279)
Q Consensus 113 ~s~~~~~~~~~aG----~~VIDlS~ 133 (279)
.. .+-+...+.+ ..|+|++-
T Consensus 87 ~~-~i~~~~~~~~~~~~~~v~Dla~ 110 (135)
T PF01488_consen 87 MP-IITEEMLKKASKKLRLVIDLAV 110 (135)
T ss_dssp ST-SSTHHHHTTTCHHCSEEEES-S
T ss_pred Cc-ccCHHHHHHHHhhhhceecccc
Confidence 55 3344445555 38999974
No 129
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.52 E-value=0.005 Score=53.31 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=54.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--ee--e---CCceeEEeec-Cc----cCCCCCcEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LS--F---QDKAYTVEEL-TE----DSFDGVDIAL 106 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~--~---~~~~~~v~~~-d~----~~~~~~DvVf 106 (279)
..++.|+||||.+|+.+.+.|.+++ .++..+ +|+. .+. +. . .+..+...+. +. +.+.++|+||
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g---~~V~l~-~R~~-~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREG---ARVVLV-GRDL-ERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCC---CEEEEE-cCCH-HHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 4689999999999999999998763 355544 4432 110 00 0 0111222222 11 2356899999
Q ss_pred ecCCCchhhhh-HHHHHhCCCEEEEcCCCC
Q 023678 107 FSAGGSISKKF-GPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 107 ~a~g~~~s~~~-~~~~~~aG~~VIDlS~~~ 135 (279)
.|++.+..... .+.+.+.+..|+|+...-
T Consensus 103 ~at~~g~~~~~~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 103 AAGAAGVELLEKLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ECCCCCceechhhhcccCceeEEEEccCCC
Confidence 99998763111 222333477899986553
No 130
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.50 E-value=0.0033 Score=61.30 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=52.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEee---------------cC-ccCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEE---------------LT-EDSF 99 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~---------------~d-~~~~ 99 (279)
|+++||+||| .||+|..+...|.+++| ++..+. ++.. -..+..+. +.+.+ +. ..+.
T Consensus 1 m~~~kI~VIG-lG~~G~~~A~~La~~G~---~V~~~D-~~~~~v~~l~~g~--~~~~e~~l~~~l~~~~~~g~l~~~~~~ 73 (415)
T PRK11064 1 MSFETISVIG-LGYIGLPTAAAFASRQK---QVIGVD-INQHAVDTINRGE--IHIVEPDLDMVVKTAVEGGYLRATTTP 73 (415)
T ss_pred CCccEEEEEC-cchhhHHHHHHHHhCCC---EEEEEe-CCHHHHHHHHCCC--CCcCCCCHHHHHHHHhhcCceeeeccc
Confidence 4467999999 79999999999998865 344442 2110 00010000 00000 00 0123
Q ss_pred CCCcEEEecCCCc----------hhhhhHH---HHHhCCCEEEEcCCC
Q 023678 100 DGVDIALFSAGGS----------ISKKFGP---IAVEKGSIVVDNSSA 134 (279)
Q Consensus 100 ~~~DvVf~a~g~~----------~s~~~~~---~~~~aG~~VIDlS~~ 134 (279)
.++|++|.|+|+. ...+.+. ..+..|..||+.|.-
T Consensus 74 ~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv 121 (415)
T PRK11064 74 EPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS 121 (415)
T ss_pred ccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence 4799999999984 2222222 234678999998774
No 131
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.50 E-value=0.0049 Score=62.47 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=26.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
...|.|.||+|++|+.+++.|.++|+ +++++.
T Consensus 80 gKvVLVTGATGgIG~aLAr~LLk~G~---~Vval~ 111 (576)
T PLN03209 80 EDLAFVAGATGKVGSRTVRELLKLGF---RVRAGV 111 (576)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC---eEEEEe
Confidence 46799999999999999999998764 455553
No 132
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.48 E-value=0.0095 Score=55.84 Aligned_cols=93 Identities=14% Similarity=0.272 Sum_probs=56.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCceeee-CCcee-----EEe-ecCccCCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSF-QDKAY-----TVE-ELTEDSFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~~~~~-~~~~~-----~v~-~~d~~~~~~~DvV 105 (279)
+|||+|+| .|.+|..+...|.+++|. +..+...+. .|..+.. .+... .+. ..+.+...++|+|
T Consensus 2 ~mkI~IiG-~G~mG~~~A~~L~~~G~~---V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 77 (341)
T PRK08229 2 MARICVLG-AGSIGCYLGGRLAAAGAD---VTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLV 77 (341)
T ss_pred CceEEEEC-CCHHHHHHHHHHHhcCCc---EEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEE
Confidence 47899999 799999999999988753 444432111 1111110 00000 011 1122345689999
Q ss_pred EecCCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 106 LFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
|.|++.....+..+.+. ..+..||++...+
T Consensus 78 il~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~ 110 (341)
T PRK08229 78 LVTVKSAATADAAAALAGHARPGAVVVSFQNGV 110 (341)
T ss_pred EEEecCcchHHHHHHHHhhCCCCCEEEEeCCCC
Confidence 99999887766666553 4567888886554
No 133
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.48 E-value=0.0099 Score=55.10 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=76.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE-eecCCCCceee-eCCceeEEeec-----Ccc-CCCC-Cc-EEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLS-FQDKAYTVEEL-----TED-SFDG-VD-IALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l-~s~~s~G~~~~-~~~~~~~v~~~-----d~~-~~~~-~D-vVf~a~ 109 (279)
+||.|.||+|..|+++++.+.+ +.++|+.. .+.+..+.... ..+.++.+... +.+ .+.. .| +++.-+
T Consensus 1 ~~V~V~Ga~GkMG~~v~~av~~---~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT 77 (275)
T TIGR02130 1 IQIMVNGCPGKMGKAVAEAADA---AGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT 77 (275)
T ss_pred CeEEEeCCCChHHHHHHHHHhc---CCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC
Confidence 4899999999999999999875 67888875 44444443221 12224444211 111 1233 78 999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHH
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIIC 176 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l 176 (279)
-+....+++..+.+.|+.+|-.+.-|- .++++.+... .+..++-.||-+--..
T Consensus 78 ~P~~~~~n~~~~~~~gv~~ViGTTG~~-------------~~~~~~l~~~-~~i~~l~apNfSiGv~ 130 (275)
T TIGR02130 78 HPSAVNDNAAFYGKHGIPFVMGTTGGD-------------REALAKLVAD-AKHPAVIAPNMAKQIV 130 (275)
T ss_pred ChHHHHHHHHHHHHCCCCEEEcCCCCC-------------HHHHHHHHHh-cCCCEEEECcccHHHH
Confidence 999999999999999998776666552 2222221110 1467888898765443
No 134
>PLN02712 arogenate dehydrogenase
Probab=96.46 E-value=0.005 Score=63.64 Aligned_cols=88 Identities=15% Similarity=0.138 Sum_probs=56.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccC-C-CCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDS-F-DGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~-~-~~~DvVf~a~g~~~s~ 115 (279)
+++|+||| .|.+|+.+.+.|.+.++ ++..+ +++.. .... ..+ +... .+.++ . .++|+||+|++.....
T Consensus 52 ~~kIgIIG-~G~mG~slA~~L~~~G~---~V~~~-dr~~~-~~~A~~~G--v~~~-~d~~e~~~~~aDvViLavP~~~~~ 122 (667)
T PLN02712 52 QLKIAIIG-FGNYGQFLAKTLISQGH---TVLAH-SRSDH-SLAARSLG--VSFF-LDPHDLCERHPDVILLCTSIISTE 122 (667)
T ss_pred CCEEEEEc-cCHHHHHHHHHHHHCCC---EEEEE-eCCHH-HHHHHHcC--CEEe-CCHHHHhhcCCCEEEEcCCHHHHH
Confidence 57999999 79999999999988753 55444 33211 1111 011 1111 12222 2 4589999999988777
Q ss_pred hhHHHHH----hCCCEEEEcCCCC
Q 023678 116 KFGPIAV----EKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~----~aG~~VIDlS~~~ 135 (279)
+.+..+. ..|+.|+|.++.-
T Consensus 123 ~vl~~l~~~~l~~g~iVvDv~SvK 146 (667)
T PLN02712 123 NVLKSLPLQRLKRNTLFVDVLSVK 146 (667)
T ss_pred HHHHhhhhhcCCCCeEEEECCCCc
Confidence 7666543 4688999998653
No 135
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.44 E-value=0.0047 Score=57.41 Aligned_cols=90 Identities=17% Similarity=0.258 Sum_probs=55.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecC--ccCCCCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~~s~~ 116 (279)
|||+||| .|..|..+.+.|.+++| ++... +++.. -..+...+. ....+++ .+.+..+|+||+|++.....+
T Consensus 1 M~Ig~IG-lG~mG~~la~~L~~~g~---~V~~~-dr~~~~~~~l~~~g~-~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~ 74 (298)
T TIGR00872 1 MQLGLIG-LGRMGANIVRRLAKRGH---DCVGY-DHDQDAVKAMKEDRT-TGVANLRELSQRLSAPRVVWVMVPHGIVDA 74 (298)
T ss_pred CEEEEEc-chHHHHHHHHHHHHCCC---EEEEE-ECCHHHHHHHHHcCC-cccCCHHHHHhhcCCCCEEEEEcCchHHHH
Confidence 4899999 79999999999988764 44443 33221 011111110 0111111 112356899999999986666
Q ss_pred hHHHH---HhCCCEEEEcCCCC
Q 023678 117 FGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~~~---~~aG~~VIDlS~~~ 135 (279)
....+ +..|..|||.|...
T Consensus 75 v~~~l~~~l~~g~ivid~st~~ 96 (298)
T TIGR00872 75 VLEELAPTLEKGDIVIDGGNSY 96 (298)
T ss_pred HHHHHHhhCCCCCEEEECCCCC
Confidence 66554 35788999998765
No 136
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.41 E-value=0.0096 Score=56.09 Aligned_cols=71 Identities=20% Similarity=0.336 Sum_probs=46.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC--ceeEEee--cC---ccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD--KAYTVEE--LT---EDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~--~~~~v~~--~d---~~~~~~~DvVf~a~g~ 111 (279)
|||+|+||+|.||..+.-.|..++. ..+++++.-....|..+...+ ....+.. -+ .+++.++|+|+.+.|.
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~-~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~ 78 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPL-VSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGV 78 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-CcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCC
Confidence 5899999999999999999987743 246666643333343322211 1123332 22 3568899999999875
No 137
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=96.40 E-value=0.01 Score=57.38 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=58.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceee----eCCc--------------------eeEEe-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLS----FQDK--------------------AYTVE- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~----~~~~--------------------~~~v~- 92 (279)
|+||+|+|+||-+|+.-++.+.++ | .+++++++..+...+... +.-+ ...+.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~--p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~ 78 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRN--PDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAAAGIEVLA 78 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhC--ccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhccCCceEEE
Confidence 368999999999999999999766 5 689888864433221111 1000 01111
Q ss_pred ecC-c---cCCCCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 93 ELT-E---DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 93 ~~d-~---~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
..+ . ....++|+|+.|.+.....+..-.++++|..|.
T Consensus 79 G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~Va 119 (385)
T PRK05447 79 GEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIA 119 (385)
T ss_pred ChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEE
Confidence 111 1 112468999999988777777778899999876
No 138
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.38 E-value=0.01 Score=46.02 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=52.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee--cCCCCceeeeCCceeEEe-ecC--ccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KRSAGKQLSFQDKAYTVE-ELT--EDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s--~~s~G~~~~~~~~~~~v~-~~d--~~~~~~~DvVf~a~g~~~ 113 (279)
..||+|+|+ |..|+.++..+.+. ..+++..+.. .+..|+.+. .+.+. .++ .+.. ++|+++.|.|...
T Consensus 3 ~~~v~ivGa-g~~G~a~~~~~~~~--~g~~i~~~~dv~~~~~G~~i~----gipV~~~~~~l~~~~-~i~iaii~VP~~~ 74 (96)
T PF02629_consen 3 KTNVIIVGA-GNLGRALLYNGFSM--RGFGIVAVFDVDPEKIGKEIG----GIPVYGSMDELEEFI-EIDIAIITVPAEA 74 (96)
T ss_dssp TEEEEEETT-TSHHHHHHHHHHHH--HCECEEEEEEECTTTTTSEET----TEEEESSHHHHHHHC-TTSEEEEES-HHH
T ss_pred CCeEEEECC-CCcHHHHHHhHHHH--cCCCCEEEEEcCCCccCcEEC----CEEeeccHHHhhhhh-CCCEEEEEcCHHH
Confidence 479999997 45556555444333 3455555543 344565442 35555 333 1123 4999999999999
Q ss_pred hhhhHHHHHhCCCEEE
Q 023678 114 SKKFGPIAVEKGSIVV 129 (279)
Q Consensus 114 s~~~~~~~~~aG~~VI 129 (279)
+.+.+.+++++|++-|
T Consensus 75 a~~~~~~~~~~gIk~i 90 (96)
T PF02629_consen 75 AQEVADELVEAGIKGI 90 (96)
T ss_dssp HHHHHHHHHHTT-SEE
T ss_pred HHHHHHHHHHcCCCEE
Confidence 9999999999999755
No 139
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=96.35 E-value=0.0094 Score=55.16 Aligned_cols=143 Identities=16% Similarity=0.164 Sum_probs=76.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee---cCCCCceeee-CCceeEEeecCccCCCCCcEEEecCCCchhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---KRSAGKQLSF-QDKAYTVEELTEDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s---~~s~G~~~~~-~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~ 115 (279)
-.|||+||||-||..+.|.|..+. -..++..-.+ .|+.-..+.. .+. -.+.++|.+.... |++|.......--
T Consensus 168 atvaivGa~G~Ia~~Iar~la~~~-~~~~ll~r~aea~~rq~l~~l~e~~~~-~~i~s~d~~~~~e-~i~v~vAs~~~g~ 244 (351)
T COG5322 168 ATVAIVGATGDIASAIARWLAPKV-GVKELLLRDAEARNRQRLTLLQEELGR-GKIMSLDYALPQE-DILVWVASMPKGV 244 (351)
T ss_pred CeEEEecCCchHHHHHHHHhcccc-CEEEEecccHHhhhhhhhhhcccccCC-Ceeeecccccccc-ceEEEEeecCCCc
Confidence 579999999999999999998651 2223222111 1111111111 111 1233444333433 4444444445566
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCCCC-----ceeeccC-CHHhhhccccCCCC-CcEE-----ECCCChHHHHHHhhhch
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVENV-----PLVIPEV-NPEAMSGIKVGMGK-GALI-----ANPNCSTIICLMAATPL 183 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~~v-----plvvPev-N~~~i~~~~~~~~~-~~iV-----anPgC~tt~l~laL~PL 183 (279)
++.+..++.||.|||-.-+--++..+ .+++|+= -.+... ++ |+ ..++ -.++|.+-.+++.+--.
T Consensus 245 ~I~pq~lkpg~~ivD~g~P~dvd~~vk~~~~V~Ii~GGlV~~s~~-it---~gi~~~~~~p~~~l~aClAEtlil~~eg~ 320 (351)
T COG5322 245 EIFPQHLKPGCLIVDGGYPKDVDTSVKNVGGVRIIPGGLVEHSLD-IT---WGIMKIVGMPVRQLFACLAETLILEFEGE 320 (351)
T ss_pred eechhhccCCeEEEcCCcCcccccccccCCCeEEecCccccCccc-cc---hhHHHHcccchhhHHHHHHHHHHHHhcch
Confidence 88999999999999965443222211 2444320 000000 00 11 0111 24678888888888888
Q ss_pred hhhcCc
Q 023678 184 HRRAKV 189 (279)
Q Consensus 184 ~~~~~i 189 (279)
+.+|-+
T Consensus 321 ~~~fS~ 326 (351)
T COG5322 321 HTNFSW 326 (351)
T ss_pred hhhccc
Confidence 777755
No 140
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=96.34 E-value=0.011 Score=54.62 Aligned_cols=85 Identities=14% Similarity=0.242 Sum_probs=48.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-cc-CC--CCCcEEEecCCCc---
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-ED-SF--DGVDIALFSAGGS--- 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~-~~--~~~DvVf~a~g~~--- 112 (279)
|||.|+||+|++|+.|.+.|.+++ .++... ++. ++++.+.+ .. .+ ...|+||.|++-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~---~~v~~~-~r~-----------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~~ 65 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERG---YEVIAT-SRS-----------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNVD 65 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTS---EEEEEE-STT-----------CS-TTSHHHHHHHHHHH--SEEEE------HH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCC---CEEEEe-Cch-----------hcCCCCHHHHHHHHHHhCCCeEeccceeecHH
Confidence 699999999999999999998763 344444 332 11111111 00 11 1468999987531
Q ss_pred ---------------hhhhhHHHHHhCCCEEEEcCCCCCCCC
Q 023678 113 ---------------ISKKFGPIAVEKGSIVVDNSSAFRMVE 139 (279)
Q Consensus 113 ---------------~s~~~~~~~~~aG~~VIDlS~~~R~~~ 139 (279)
....++..+.+.|+++|=+|+++=++.
T Consensus 66 ~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~STd~VFdG 107 (286)
T PF04321_consen 66 ACEKNPEEAYAINVDATKNLAEACKERGARLIHISTDYVFDG 107 (286)
T ss_dssp HHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-S
T ss_pred hhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEcC
Confidence 123444555679999998898876653
No 141
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.33 E-value=0.026 Score=47.83 Aligned_cols=82 Identities=12% Similarity=0.156 Sum_probs=51.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|.|+| .|-+|...++.|.+.++ ++.++ +++- ...+. .......-..++..++.++|+||.|++.......
T Consensus 13 ~~~vlVvG-GG~va~rka~~Ll~~ga---~V~VI-sp~~-~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e~N~~ 86 (157)
T PRK06719 13 NKVVVIIG-GGKIAYRKASGLKDTGA---FVTVV-SPEI-CKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHAVNMM 86 (157)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-cCcc-CHHHHhccCcEEEecccChhcCCCceEEEECCCCHHHHHH
Confidence 57999999 59999999999987643 45555 3321 11111 1111122223445667889999999998766555
Q ss_pred HHHHHhCCC
Q 023678 118 GPIAVEKGS 126 (279)
Q Consensus 118 ~~~~~~aG~ 126 (279)
....++++.
T Consensus 87 i~~~a~~~~ 95 (157)
T PRK06719 87 VKQAAHDFQ 95 (157)
T ss_pred HHHHHHHCC
Confidence 555554444
No 142
>PLN02214 cinnamoyl-CoA reductase
Probab=96.32 E-value=0.034 Score=52.34 Aligned_cols=91 Identities=23% Similarity=0.298 Sum_probs=51.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-c--eee-e--CCceeEEe--ecC-cc----CCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-K--QLS-F--QDKAYTVE--ELT-ED----SFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~--~~~-~--~~~~~~v~--~~d-~~----~~~~~DvV 105 (279)
+++|.|.||||++|+.|++.|.++++ +++.+. |+... . .+. . ....+.+. |+. .. .+.++|+|
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V 85 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGY---TVKGTV-RNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV 85 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcC---EEEEEe-CCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence 46899999999999999999998865 444443 32111 0 000 0 01122222 221 11 24679999
Q ss_pred EecCCCch-------------hhhhHHHHHhCCC-EEEEcCC
Q 023678 106 LFSAGGSI-------------SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 106 f~a~g~~~-------------s~~~~~~~~~aG~-~VIDlS~ 133 (279)
|.+.+... +..+++.+.++|+ ++|=.|+
T Consensus 86 ih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 86 FHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 99986421 1233445556776 4665555
No 143
>PRK05086 malate dehydrogenase; Provisional
Probab=96.30 E-value=0.014 Score=54.98 Aligned_cols=70 Identities=24% Similarity=0.450 Sum_probs=41.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCC--CceeeeCC-c-eeEEee--c-C-ccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSA--GKQLSFQD-K-AYTVEE--L-T-EDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~--G~~~~~~~-~-~~~v~~--~-d-~~~~~~~DvVf~a~g 110 (279)
|||+|+||||.||+.++..|... .+. .+++++. +... |..+...+ . ...+.. . + .+++.++|+||+|+|
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~-~~~~~el~L~d-~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ-LPAGSELSLYD-IAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-CCCccEEEEEe-cCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 68999999999999999888542 133 3455553 3222 11122111 1 123332 1 2 245688999999998
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 79 ~ 79 (312)
T PRK05086 79 V 79 (312)
T ss_pred C
Confidence 5
No 144
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=96.30 E-value=0.031 Score=52.74 Aligned_cols=162 Identities=17% Similarity=0.197 Sum_probs=88.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccCCCCCcEEEecCCCc-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGS-ISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~-~s~~ 116 (279)
.++|+||| .|..|+.+.+.|.++++ +++....+++.. ......+ +.+.+ ..+...++|+||+|++.. ....
T Consensus 3 ~kkIgiIG-~G~mG~AiA~~L~~sG~---~Viv~~~~~~~~~~~a~~~G--v~~~s-~~ea~~~ADiVvLaVpp~~~~~~ 75 (314)
T TIGR00465 3 GKTVAIIG-YGSQGHAQALNLRDSGL---NVIVGLRKGGASWKKATEDG--FKVGT-VEEAIPQADLIMNLLPDEVQHEV 75 (314)
T ss_pred cCEEEEEe-EcHHHHHHHHHHHHCCC---eEEEEECcChhhHHHHHHCC--CEECC-HHHHHhcCCEEEEeCCcHhHHHH
Confidence 46899999 79999999999988754 333322221111 1111111 12222 123356799999999987 4444
Q ss_pred hHHHHH---hCCCEEEEcCCCCCCCC---------CCceeeccCCHHhhhc-cccCCCCCcEE-ECCCChHHHHHHhhhc
Q 023678 117 FGPIAV---EKGSIVVDNSSAFRMVE---------NVPLVIPEVNPEAMSG-IKVGMGKGALI-ANPNCSTIICLMAATP 182 (279)
Q Consensus 117 ~~~~~~---~aG~~VIDlS~~~R~~~---------~vplvvPevN~~~i~~-~~~~~~~~~iV-anPgC~tt~l~laL~P 182 (279)
+...+. +.|. +|..++-|.++. ++..+.|..+...++. +.++..-..++ .+++++..+.-+++.=
T Consensus 76 v~~ei~~~l~~g~-iVs~aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~ 154 (314)
T TIGR00465 76 YEAEIQPLLKEGK-TLGFSHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAY 154 (314)
T ss_pred HHHHHHhhCCCCc-EEEEeCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHH
Confidence 443332 3454 777777665431 2345678777664421 21121112444 6777777766665543
Q ss_pred hhhhcCccE-E------------EEEEeecccccChhhH
Q 023678 183 LHRRAKVTR-M------------VVSTYQAASGAGAAAM 208 (279)
Q Consensus 183 L~~~~~i~~-v------------~vtt~q~vSGaG~~~~ 208 (279)
+..-+..+. | .++...+.||.|-+-+
T Consensus 155 ~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v 193 (314)
T TIGR00465 155 AKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALI 193 (314)
T ss_pred HHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHH
Confidence 332222211 1 2345567888886654
No 145
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.30 E-value=0.014 Score=55.46 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=56.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC-------CceEEEEEeecCCCCceeeeCCce-eEE-eec----Ccc--CCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF-------PYRSIKMLASKRSAGKQLSFQDKA-YTV-EEL----TED--SFDG 101 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~-------p~~~l~~l~s~~s~G~~~~~~~~~-~~v-~~~----d~~--~~~~ 101 (279)
|+++||+|+| .|-||+.++++|.+++- -.++++.++.++..-.. ...... ... .+. +.+ .-.+
T Consensus 1 ~~~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (333)
T COG0460 1 MKTVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVR-DLDLLNAEVWTTDGALSLGDEVLLDED 78 (333)
T ss_pred CceEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcc-cccccchhhheecccccccHhhhcccc
Confidence 5678999999 89999999999987521 24566666544211000 111111 011 111 011 1247
Q ss_pred CcEEEecCCC--chhh--hhHHHHHhCCCEEE
Q 023678 102 VDIALFSAGG--SISK--KFGPIAVEKGSIVV 129 (279)
Q Consensus 102 ~DvVf~a~g~--~~s~--~~~~~~~~aG~~VI 129 (279)
.|+|+.+++. +.++ ++..+++++|..||
T Consensus 79 ~dvvve~~~~d~~~~~~~~~~~~al~~GkhVV 110 (333)
T COG0460 79 IDVVVELVGGDVEPAEPADLYLKALENGKHVV 110 (333)
T ss_pred CCEEEecCcccCCchhhHHHHHHHHHcCCeEE
Confidence 8999999876 3445 78889999999999
No 146
>PRK06392 homoserine dehydrogenase; Provisional
Probab=96.25 E-value=0.018 Score=54.63 Aligned_cols=91 Identities=20% Similarity=0.239 Sum_probs=55.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCC-----CCceEEEEEeecCC-----CCceeee----CC-cee---EEeecCccCC--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRD-----FPYRSIKMLASKRS-----AGKQLSF----QD-KAY---TVEELTEDSF-- 99 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~-----~p~~~l~~l~s~~s-----~G~~~~~----~~-~~~---~v~~~d~~~~-- 99 (279)
|||+|+| .|.||+.++++|.++. -..++++.+..++. .|-.+.. .. ..+ .....+.+.+
T Consensus 1 mrVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~ 79 (326)
T PRK06392 1 IRISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFE 79 (326)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhc
Confidence 4899999 8999999999997631 13567777765432 1111100 00 000 0011111111
Q ss_pred CCCcEEEecCCCch----hhhhHHHHHhCCCEEEEc
Q 023678 100 DGVDIALFSAGGSI----SKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 100 ~~~DvVf~a~g~~~----s~~~~~~~~~aG~~VIDl 131 (279)
.++|+++.|++... ...+.++++++|+-||-.
T Consensus 80 ~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTa 115 (326)
T PRK06392 80 IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTA 115 (326)
T ss_pred CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcC
Confidence 36899999997432 456778999999999843
No 147
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.24 E-value=0.0093 Score=57.86 Aligned_cols=89 Identities=19% Similarity=0.290 Sum_probs=51.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCc-eeeeCC-----------ceeEEeecCc-cCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGK-QLSFQD-----------KAYTVEELTE-DSFD 100 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~-~~~~~~-----------~~~~v~~~d~-~~~~ 100 (279)
|||+||| .|++|..+...|.+++|. +..+..... .|. ++...+ ..+.+.. +. +.+.
T Consensus 1 mkI~vIG-lG~~G~~lA~~La~~G~~---V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~-~~~~~~~ 75 (411)
T TIGR03026 1 MKIAVIG-LGYVGLPLAALLADLGHE---VTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATT-DYEDAIR 75 (411)
T ss_pred CEEEEEC-CCchhHHHHHHHHhcCCe---EEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEEC-CHHHHHh
Confidence 4899999 799999999999988763 444422111 111 000000 0122211 22 2357
Q ss_pred CCcEEEecCCCchh----------hhhHHH---HHhCCCEEEEcCC
Q 023678 101 GVDIALFSAGGSIS----------KKFGPI---AVEKGSIVVDNSS 133 (279)
Q Consensus 101 ~~DvVf~a~g~~~s----------~~~~~~---~~~aG~~VIDlS~ 133 (279)
++|+||.|+++... ...... .+..|..|||.|.
T Consensus 76 ~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~ST 121 (411)
T TIGR03026 76 DADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLEST 121 (411)
T ss_pred hCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCc
Confidence 89999999997632 222222 2357889998874
No 148
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=96.23 E-value=0.0046 Score=57.40 Aligned_cols=89 Identities=15% Similarity=0.225 Sum_probs=53.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCch-hhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
.||+||| .|..|..+.+.|.+++| ++... +++. .+.-.+......... ++ +...++|+||.|++... .++.
T Consensus 2 ~~Ig~IG-lG~mG~~mA~~l~~~G~---~V~v~-d~~~-~~~~~~~~~g~~~~~-s~~~~~~~aDvVi~~vp~~~~~~~v 74 (296)
T PRK15461 2 AAIAFIG-LGQMGSPMASNLLKQGH---QLQVF-DVNP-QAVDALVDKGATPAA-SPAQAAAGAEFVITMLPNGDLVRSV 74 (296)
T ss_pred CeEEEEe-eCHHHHHHHHHHHHCCC---eEEEE-cCCH-HHHHHHHHcCCcccC-CHHHHHhcCCEEEEecCCHHHHHHH
Confidence 4899999 79999999999998865 34333 3321 111011000011111 11 23467899999999875 3333
Q ss_pred HH------HHHhCCCEEEEcCCCC
Q 023678 118 GP------IAVEKGSIVVDNSSAF 135 (279)
Q Consensus 118 ~~------~~~~aG~~VIDlS~~~ 135 (279)
.. ..+..|..|||.|...
T Consensus 75 l~~~~~i~~~l~~g~lvid~sT~~ 98 (296)
T PRK15461 75 LFGENGVCEGLSRDALVIDMSTIH 98 (296)
T ss_pred HcCcccHhhcCCCCCEEEECCCCC
Confidence 21 1235788899998764
No 149
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.22 E-value=0.018 Score=54.59 Aligned_cols=73 Identities=23% Similarity=0.377 Sum_probs=45.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC--CceeEEeec-C----ccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ--DKAYTVEEL-T----EDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~--~~~~~v~~~-d----~~~~~~~DvVf~a~g~ 111 (279)
|.||+|+||.|.||..+...|..++. ..+++++.-....|..+... .....+.+. + .+++.++|+|+.++|.
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~-~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG~ 86 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPH-VSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAGV 86 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCC-CCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCCC
Confidence 56999999999999999999886632 33566663222233222211 112334332 1 2467899999999886
Q ss_pred c
Q 023678 112 S 112 (279)
Q Consensus 112 ~ 112 (279)
.
T Consensus 87 ~ 87 (321)
T PTZ00325 87 P 87 (321)
T ss_pred C
Confidence 3
No 150
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.22 E-value=0.0061 Score=57.15 Aligned_cols=91 Identities=16% Similarity=0.271 Sum_probs=56.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--------CCcee--EEeec-Cc-cCCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--------QDKAY--TVEEL-TE-DSFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--------~~~~~--~v~~~-d~-~~~~~~DvV 105 (279)
+|||+|+| .|..|..+...|.+.+|+ +.++ .|+.. -..+.. .+..+ .+... +. +...++|+|
T Consensus 4 ~m~I~iIG-~G~mG~~ia~~L~~~G~~---V~~~-~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~V 78 (328)
T PRK14618 4 GMRVAVLG-AGAWGTALAVLAASKGVP---VRLW-ARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFA 78 (328)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCCCe---EEEE-eCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEE
Confidence 47999999 699999999999987653 4444 33211 011110 01000 01111 22 234679999
Q ss_pred EecCCCchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 106 LFSAGGSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
|+|++....++..+. +..++.+||.+.-+
T Consensus 79 i~~v~~~~~~~v~~~-l~~~~~vi~~~~Gi 107 (328)
T PRK14618 79 VVAVPSKALRETLAG-LPRALGYVSCAKGL 107 (328)
T ss_pred EEECchHHHHHHHHh-cCcCCEEEEEeecc
Confidence 999999977666644 45678899887754
No 151
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.21 E-value=0.012 Score=53.76 Aligned_cols=68 Identities=22% Similarity=0.297 Sum_probs=39.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-c----cCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-E----DSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g 110 (279)
++|.|.||+|++|+.|++.|.++++ ++..+..+......+...+......|+. . +.+.++|+||.+.+
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~---~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGE---EVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCC---EEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4799999999999999999998754 5555543222111111111111122332 1 12457899998875
No 152
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=96.20 E-value=0.008 Score=54.27 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=24.1
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
||.|+||||++|+.+++.|.++++ ++..+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~---~v~~~ 29 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR---VVVAL 29 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC---EEEEe
Confidence 589999999999999999988754 44444
No 153
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.19 E-value=0.026 Score=52.84 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|+|||.+|.+|+-+.++|.++++ .+....++.. ++ .+....+|+||+|+|... .+
T Consensus 157 ~Gk~V~viGrs~~mG~PmA~~L~~~g~---tVtv~~~rT~---------------~l-~e~~~~ADIVIsavg~~~--~v 215 (296)
T PRK14188 157 SGLNAVVIGRSNLVGKPMAQLLLAANA---TVTIAHSRTR---------------DL-PAVCRRADILVAAVGRPE--MV 215 (296)
T ss_pred CCCEEEEEcCCcchHHHHHHHHHhCCC---EEEEECCCCC---------------CH-HHHHhcCCEEEEecCChh--hc
Confidence 467999999999999999999997643 4444433221 01 123457899999999864 34
Q ss_pred HHHHHhCCCEEEEcCCCCCCC-C---CCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMV-E---NVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~-~---~vplvvPevN~~~i~~ 155 (279)
....++.|+.|||.+-.+-.+ + +..-++-.|+.+.+..
T Consensus 216 ~~~~lk~GavVIDvGin~~~~~~~~~g~~~l~GDvd~~~v~~ 257 (296)
T PRK14188 216 KGDWIKPGATVIDVGINRIPAPEKGEGKTRLVGDVAFAEAAE 257 (296)
T ss_pred chheecCCCEEEEcCCcccCCccccCCCceeeCCCCHHHHHh
Confidence 445578999999997655211 1 1113567777666653
No 154
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.17 E-value=0.012 Score=51.25 Aligned_cols=27 Identities=15% Similarity=0.174 Sum_probs=24.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++++|.|+||||.+|++|++.|.++++
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~ 31 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGA 31 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 456899999999999999999998865
No 155
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.15 E-value=0.03 Score=52.30 Aligned_cols=91 Identities=13% Similarity=0.104 Sum_probs=60.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CC--CcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DG--VDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~--~DvVf~a~g~~~s~ 115 (279)
.-||.|.|.||-.|+.+++.|.+.+|+ .+..+. ++.-+..+. + +.... +..++ .. +|+++.++|.....
T Consensus 8 ~~~~~v~~~~~~~g~~~l~~l~~~g~~--~v~pVn-p~~~~~~v~--G--~~~y~-sv~dlp~~~~~DlAvi~vp~~~v~ 79 (291)
T PRK05678 8 DTKVIVQGITGKQGTFHTEQMLAYGTN--IVGGVT-PGKGGTTVL--G--LPVFN-TVAEAVEATGANASVIYVPPPFAA 79 (291)
T ss_pred CCeEEEeCCCchHHHHHHHHHHHCCCC--EEEEEC-CCCCCCeEe--C--eeccC-CHHHHhhccCCCEEEEEcCHHHHH
Confidence 369999999999999999999887554 444553 221011111 1 11111 11122 22 89999999999999
Q ss_pred hhHHHHHhCCCE-EEEcCCCCCC
Q 023678 116 KFGPIAVEKGSI-VVDNSSAFRM 137 (279)
Q Consensus 116 ~~~~~~~~aG~~-VIDlS~~~R~ 137 (279)
+.+.++.++|++ +|=.|+-|.+
T Consensus 80 ~~l~e~~~~gvk~avI~s~Gf~~ 102 (291)
T PRK05678 80 DAILEAIDAGIDLIVCITEGIPV 102 (291)
T ss_pred HHHHHHHHCCCCEEEEECCCCCH
Confidence 999999999985 3447887753
No 156
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.13 E-value=0.0062 Score=56.64 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=54.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eee-eCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
..+|+|+| .|.+|+.+.+.|...+. ++.+. +|+.... ... .........++ .+.+.++|+||.|+|...-.+
T Consensus 151 gk~v~IiG-~G~iG~avA~~L~~~G~---~V~v~-~R~~~~~~~~~~~g~~~~~~~~l-~~~l~~aDiVint~P~~ii~~ 224 (287)
T TIGR02853 151 GSNVMVLG-FGRTGMTIARTFSALGA---RVFVG-ARSSADLARITEMGLIPFPLNKL-EEKVAEIDIVINTIPALVLTA 224 (287)
T ss_pred CCEEEEEc-ChHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHCCCeeecHHHH-HHHhccCCEEEECCChHHhCH
Confidence 36899999 59999999999988753 54444 3332100 000 01111111111 123568999999998764322
Q ss_pred hHHHHHhCCCEEEEcCCCC
Q 023678 117 FGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~ 135 (279)
-.-...+.|+.+||+++.-
T Consensus 225 ~~l~~~k~~aliIDlas~P 243 (287)
T TIGR02853 225 DVLSKLPKHAVIIDLASKP 243 (287)
T ss_pred HHHhcCCCCeEEEEeCcCC
Confidence 2223346789999999853
No 157
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.13 E-value=0.01 Score=56.17 Aligned_cols=74 Identities=22% Similarity=0.317 Sum_probs=46.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC----ceEEEEEeecC----CCCceeeeCC------ceeEEeecCccCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKR----SAGKQLSFQD------KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p----~~~l~~l~s~~----s~G~~~~~~~------~~~~v~~~d~~~~~~~D 103 (279)
+..||+|+||+|.||..+.-.|...+.- ..+++++.... ..|..+...+ ....+..-+.+++.++|
T Consensus 2 ~p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daD 81 (323)
T TIGR01759 2 KPVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVD 81 (323)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCC
Confidence 4689999999999999999988776421 12677774322 1232221111 11233322245678999
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+|+.+.|.
T Consensus 82 vVVitAG~ 89 (323)
T TIGR01759 82 AALLVGAF 89 (323)
T ss_pred EEEEeCCC
Confidence 99999876
No 158
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.13 E-value=0.013 Score=55.45 Aligned_cols=73 Identities=19% Similarity=0.348 Sum_probs=46.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCC----CCceeeeCC------ceeEEeecCccCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQD------KAYTVEELTEDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s----~G~~~~~~~------~~~~v~~~d~~~~~~~Dv 104 (279)
..||+|+||+|.||..++-.|..++. ...+++++...+. .|..+...+ ....+..-+.+++.++|+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDi 81 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADW 81 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCE
Confidence 46999999999999999998886632 1236777744222 233222111 123333223456889999
Q ss_pred EEecCCC
Q 023678 105 ALFSAGG 111 (279)
Q Consensus 105 Vf~a~g~ 111 (279)
|+.+.|.
T Consensus 82 vvitaG~ 88 (322)
T cd01338 82 ALLVGAK 88 (322)
T ss_pred EEEeCCC
Confidence 9999876
No 159
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=96.11 E-value=0.033 Score=44.85 Aligned_cols=83 Identities=22% Similarity=0.246 Sum_probs=49.8
Q ss_pred EEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 41 SVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 41 kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+|||+||+ +..|..+++.|.++++ +++.+.-+ +..+ .+. -.+..++. .-..+|+++++++.....++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~---~v~~Vnp~---~~~i--~G~-~~y~sl~e-~p~~iDlavv~~~~~~~~~~ 71 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGY---EVYPVNPK---GGEI--LGI-KCYPSLAE-IPEPIDLAVVCVPPDKVPEI 71 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT----EEEEESTT---CSEE--TTE-E-BSSGGG-CSST-SEEEE-S-HHHHHHH
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCC---EEEEECCC---ceEE--CcE-EeeccccC-CCCCCCEEEEEcCHHHHHHH
Confidence 79999998 7789999999998643 56666322 1211 111 11222221 23578999999999999999
Q ss_pred HHHHHhCCCE-EEEcCC
Q 023678 118 GPIAVEKGSI-VVDNSS 133 (279)
Q Consensus 118 ~~~~~~aG~~-VIDlS~ 133 (279)
++++.+.|++ |+=.++
T Consensus 72 v~~~~~~g~~~v~~~~g 88 (116)
T PF13380_consen 72 VDEAAALGVKAVWLQPG 88 (116)
T ss_dssp HHHHHHHT-SEEEE-TT
T ss_pred HHHHHHcCCCEEEEEcc
Confidence 9999999885 333444
No 160
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.07 E-value=0.027 Score=52.30 Aligned_cols=70 Identities=17% Similarity=0.383 Sum_probs=42.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEee-cCccCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
|+||+|+|| |.+|..+...+..+++. +++++..... .|..... ......+.. .+.+++.++|+||++.
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~--ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~~~~~aDiVii~~ 78 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELG--DVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYEDIAGSDVVVITA 78 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe--EEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHHHHCCCCEEEECC
Confidence 479999997 99999999999887432 6666632221 1211110 111223332 2234578999999997
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
+.
T Consensus 79 ~~ 80 (307)
T PRK06223 79 GV 80 (307)
T ss_pred CC
Confidence 53
No 161
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.05 E-value=0.041 Score=51.39 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=55.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eee--eCCceeEEe--ecC-cc----CCCCCcEEEec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLS--FQDKAYTVE--ELT-ED----SFDGVDIALFS 108 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~--~~~~~~~v~--~~d-~~----~~~~~DvVf~a 108 (279)
.++|.|.||||++|+.|++.|.+++ +..++..+ +++.... .+. .....+.+. |+. .+ .+.++|+||.+
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g-~~~~V~~~-~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~ 81 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENY-NPKKIIIY-SRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHA 81 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhC-CCcEEEEE-cCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEEC
Confidence 4689999999999999999998763 22355544 3332211 000 011122222 322 11 24578999998
Q ss_pred CCCch------------------hhhhHHHHHhCCC-EEEEcCCCCCCCCCCce
Q 023678 109 AGGSI------------------SKKFGPIAVEKGS-IVVDNSSAFRMVENVPL 143 (279)
Q Consensus 109 ~g~~~------------------s~~~~~~~~~aG~-~VIDlS~~~R~~~~vpl 143 (279)
.+... ...+...+.+.|+ ++|=.|+.....+..+|
T Consensus 82 Ag~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~~~~~p~~~Y 135 (324)
T TIGR03589 82 AALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTDKAANPINLY 135 (324)
T ss_pred cccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCHH
Confidence 76421 1223344455665 56667765433333333
No 162
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.05 E-value=0.006 Score=51.39 Aligned_cols=116 Identities=16% Similarity=0.343 Sum_probs=68.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--------Cceee-eCC----ceeEEeecCc-cCCCCCcEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLS-FQD----KAYTVEELTE-DSFDGVDIAL 106 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--------G~~~~-~~~----~~~~v~~~d~-~~~~~~DvVf 106 (279)
||+|+| .|..|..+...|.+++ .++.+. +++.. +.... +.+ ..+.+.. |. +.++++|+++
T Consensus 1 KI~ViG-aG~~G~AlA~~la~~g---~~V~l~-~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~-dl~~a~~~ad~Ii 74 (157)
T PF01210_consen 1 KIAVIG-AGNWGTALAALLADNG---HEVTLW-GRDEEQIEEINETRQNPKYLPGIKLPENIKATT-DLEEALEDADIII 74 (157)
T ss_dssp EEEEES-SSHHHHHHHHHHHHCT---EEEEEE-TSCHHHHHHHHHHTSETTTSTTSBEETTEEEES-SHHHHHTT-SEEE
T ss_pred CEEEEC-cCHHHHHHHHHHHHcC---CEEEEE-eccHHHHHHHHHhCCCCCCCCCcccCccccccc-CHHHHhCcccEEE
Confidence 799999 5999999999999875 344444 44320 00000 011 1233322 32 3457899999
Q ss_pred ecCCCchhhhhHHHHH---hCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC
Q 023678 107 FSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP 169 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP 169 (279)
.|+|+...+++++++. +.|..+|-++.-| +.+--+.+.|+-.+.+..- .-..++.|
T Consensus 75 iavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~--~~~~~~~~~~~i~~~~~~~-----~~~~lsGP 133 (157)
T PF01210_consen 75 IAVPSQAHREVLEQLAPYLKKGQIIISATKGF--EPGTLLLLSEVIEEILPIP-----RIAVLSGP 133 (157)
T ss_dssp E-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE--ETTEEEEHHHHHHHHHSSC-----GEEEEESS
T ss_pred ecccHHHHHHHHHHHhhccCCCCEEEEecCCc--ccCCCccHHHHHHHHhhhc-----ceEEeeCc
Confidence 9999999888888775 4788898888777 3333445566665555420 23455666
No 163
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.04 E-value=0.009 Score=55.73 Aligned_cols=90 Identities=16% Similarity=0.184 Sum_probs=54.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eeeCCceeEEeecC--ccCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELT--EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~~s~ 115 (279)
..||.|+| .|.+|+.+++.|...+ .++.++ +++..... ....+ .....++ .+.+.++|+||.|+|.....
T Consensus 152 g~kvlViG-~G~iG~~~a~~L~~~G---a~V~v~-~r~~~~~~~~~~~G--~~~~~~~~l~~~l~~aDiVI~t~p~~~i~ 224 (296)
T PRK08306 152 GSNVLVLG-FGRTGMTLARTLKALG---ANVTVG-ARKSAHLARITEMG--LSPFHLSELAEEVGKIDIIFNTIPALVLT 224 (296)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHCC---CEEEEE-ECCHHHHHHHHHcC--CeeecHHHHHHHhCCCCEEEECCChhhhh
Confidence 47999999 5999999999998764 355444 34321110 00011 1111111 23356899999999876332
Q ss_pred hhHHHHHhCCCEEEEcCCCC
Q 023678 116 KFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~ 135 (279)
+-.-.....|..|||+++.-
T Consensus 225 ~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 225 KEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred HHHHHcCCCCcEEEEEccCC
Confidence 22223356799999998763
No 164
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=96.03 E-value=0.02 Score=52.43 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=50.3
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeec-Cc----------cCCCCCcEEEecCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-TE----------DSFDGVDIALFSAG 110 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~-d~----------~~~~~~DvVf~a~g 110 (279)
|.|.||||++|+.|++.|.++++ +++.+..+...+.... ......+.+. +. ..+.++|+||.|++
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~---~~v~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A~ 77 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGI---TDILVVDNLKDGTKFV-NLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEGA 77 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCC---ceEEEecCCCcchHHH-hhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECce
Confidence 78999999999999999998753 3344433333222110 0011112111 00 11236899999864
Q ss_pred Cch----------------hhhhHHHHHhCCCEEEEcCCCC
Q 023678 111 GSI----------------SKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~~----------------s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
... +..++..+.+.|+++|=.|+..
T Consensus 78 ~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~~~i~~SS~~ 118 (308)
T PRK11150 78 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAA 118 (308)
T ss_pred ecCCcCCChHHHHHHHHHHHHHHHHHHHHcCCcEEEEcchH
Confidence 210 1234455566788887777753
No 165
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=95.99 E-value=0.032 Score=50.54 Aligned_cols=30 Identities=20% Similarity=0.369 Sum_probs=24.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+|.|.||||++|+.|++.|.+++| +++.+.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~---~V~~~~ 31 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGH---DVRGLD 31 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCC---eEEEEe
Confidence 499999999999999999998644 445553
No 166
>PRK05865 hypothetical protein; Provisional
Probab=95.98 E-value=0.019 Score=60.84 Aligned_cols=89 Identities=16% Similarity=0.259 Sum_probs=52.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-c----cCCCCCcEEEecCCCc--
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-E----DSFDGVDIALFSAGGS-- 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~----~~~~~~DvVf~a~g~~-- 112 (279)
|||.|.||||++|+++++.|.++++ +++.+ +++.... .. ........|+. . ..+.++|+||.+.+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~---~Vv~l-~R~~~~~-~~-~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~ 74 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGH---EVVGI-ARHRPDS-WP-SSADFIAADIRDATAVESAMTGADVVAHCAWVRGR 74 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcC---EEEEE-ECCchhh-cc-cCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccc
Confidence 4899999999999999999998764 45445 3322111 11 01111112322 1 1246799999997642
Q ss_pred -------hhhhhHHHHHhCCC-EEEEcCCC
Q 023678 113 -------ISKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 113 -------~s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
-+..+++.+.+.|+ ++|-.|+.
T Consensus 75 ~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~ 104 (854)
T PRK05865 75 NDHINIDGTANVLKAMAETGTGRIVFTSSG 104 (854)
T ss_pred hHHHHHHHHHHHHHHHHHcCCCeEEEECCc
Confidence 12344555566776 56656664
No 167
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.98 E-value=0.014 Score=53.79 Aligned_cols=24 Identities=29% Similarity=0.412 Sum_probs=22.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRD 63 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~ 63 (279)
|||.|.||+|++|+.|++.|.+++
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g 24 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG 24 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC
Confidence 489999999999999999998874
No 168
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=95.97 E-value=0.029 Score=46.92 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=55.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..+|+.|..+|.++ ...+....++ . + ++ .+....+|+|++|+|.. ..+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~---gatV~~~~~~-t--~------------~l-~~~v~~ADIVvsAtg~~--~~i 85 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRD---GATVYSCDWK-T--I------------QL-QSKVHDADVVVVGSPKP--EKV 85 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC---CCEEEEeCCC-C--c------------CH-HHHHhhCCEEEEecCCC--Ccc
Confidence 3579999999999999999999875 3344344221 1 0 11 12346899999999977 345
Q ss_pred HHHHHhCCCEEEEcCCCC
Q 023678 118 GPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~ 135 (279)
-...++.|+.|||.+...
T Consensus 86 ~~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEWIKPGATVINCSPTK 103 (140)
T ss_pred CHHHcCCCCEEEEcCCCc
Confidence 567789999999987654
No 169
>PLN00106 malate dehydrogenase
Probab=95.94 E-value=0.033 Score=52.75 Aligned_cols=74 Identities=19% Similarity=0.369 Sum_probs=46.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC--CceeEEeec--C---ccCCCCCcEEEecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ--DKAYTVEEL--T---EDSFDGVDIALFSA 109 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~--~~~~~v~~~--d---~~~~~~~DvVf~a~ 109 (279)
....||+|+||+|.||..+...|..+++ ..+++++.-....|..+... .....+.++ + .+++.++|+|+.+.
T Consensus 16 ~~~~KV~IiGaaG~VG~~~a~~l~~~~~-~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitA 94 (323)
T PLN00106 16 APGFKVAVLGAAGGIGQPLSLLMKMNPL-VSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPA 94 (323)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCC-CCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeC
Confidence 3357999999999999999999986632 23566663323333322211 112234331 1 24578999999998
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
|.
T Consensus 95 G~ 96 (323)
T PLN00106 95 GV 96 (323)
T ss_pred CC
Confidence 75
No 170
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.92 E-value=0.018 Score=53.09 Aligned_cols=94 Identities=15% Similarity=0.186 Sum_probs=55.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cc---ee----ee---CC------------ceeEEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QL----SF---QD------------KAYTVEE 93 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~---~~----~~---~~------------~~~~v~~ 93 (279)
+..||+|+| .|+.|..+...|.+++|+ +.++ .++.. .+ .+ .. .+ ..+.+.
T Consensus 2 ~~~kIaViG-aG~mG~~iA~~la~~G~~---V~l~-d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 75 (287)
T PRK08293 2 DIKNVTVAG-AGVLGSQIAFQTAFHGFD---VTIY-DISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLT- 75 (287)
T ss_pred CccEEEEEC-CCHHHHHHHHHHHhcCCe---EEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEe-
Confidence 346899999 599999999999987653 4344 22210 00 00 00 00 011222
Q ss_pred cCc-cCCCCCcEEEecCCCch--hhhhHHHH---HhCCCEEEEcCCCCCC
Q 023678 94 LTE-DSFDGVDIALFSAGGSI--SKKFGPIA---VEKGSIVVDNSSAFRM 137 (279)
Q Consensus 94 ~d~-~~~~~~DvVf~a~g~~~--s~~~~~~~---~~aG~~VIDlS~~~R~ 137 (279)
.+. +.+.++|+||.|++... -+++..++ ...++.+.+++|.++.
T Consensus 76 ~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~ 125 (287)
T PRK08293 76 TDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLP 125 (287)
T ss_pred CCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCH
Confidence 122 23578999999999763 33433333 3566777789988755
No 171
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.91 E-value=0.016 Score=55.04 Aligned_cols=91 Identities=16% Similarity=0.260 Sum_probs=58.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC------C-CceEEEEEeecCC-----CCceeee-------CC--cee----EEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD------F-PYRSIKMLASKRS-----AGKQLSF-------QD--KAY----TVEE 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~------~-p~~~l~~l~s~~s-----~G~~~~~-------~~--~~~----~v~~ 93 (279)
+++|+|+| .|.||+.++++|.++. + -.++++.++.++. .|-.+.. .+ ..+ ...+
T Consensus 2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 47999999 8999999999987631 0 1367777754321 1211110 00 000 0011
Q ss_pred cCccC-C--CCCcEEEecCCCchhhhhHHHHHhCCCEEEE
Q 023678 94 LTEDS-F--DGVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 94 ~d~~~-~--~~~DvVf~a~g~~~s~~~~~~~~~aG~~VID 130 (279)
.+.++ + .++|+++.+++.+.+.++..+++++|+.||-
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVt 120 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVT 120 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEE
Confidence 12111 2 3689999999999999999999999999884
No 172
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.91 E-value=0.013 Score=54.39 Aligned_cols=88 Identities=13% Similarity=0.211 Sum_probs=52.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccC----CCCCcEEEecCCCc-h
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS----FDGVDIALFSAGGS-I 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~----~~~~DvVf~a~g~~-~ 113 (279)
|||+||| .|..|+.+.+.|.+.+| ++... +++.. -+.+...+ ..+.+ ++++ ..+.|+||.|++.. .
T Consensus 1 m~Ig~IG-lG~MG~~mA~~L~~~g~---~v~v~-dr~~~~~~~~~~~g--~~~~~-~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 1 MQLGMIG-LGRMGGNMARRLLRGGH---EVVGY-DRNPEAVEALAEEG--ATGAD-SLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred CEEEEEc-ccHHHHHHHHHHHHCCC---eEEEE-ECCHHHHHHHHHCC--CeecC-CHHHHHhhcCCCCEEEEEecCCcH
Confidence 4899999 79999999999998755 44443 33211 11111111 11111 1111 12469999999987 4
Q ss_pred hhhhHHHH---HhCCCEEEEcCCCC
Q 023678 114 SKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 114 s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
..+....+ +..|..|||.|...
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~ 97 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSY 97 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 45554443 34688899987643
No 173
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.88 E-value=0.029 Score=48.41 Aligned_cols=31 Identities=13% Similarity=0.330 Sum_probs=25.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++++.|.||+|++|+.+++.|.++ + +++.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~---~V~~~~ 33 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-H---TLLLGG 33 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-C---CEEEEe
Confidence 468999999999999999999875 3 455553
No 174
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.88 E-value=0.048 Score=44.80 Aligned_cols=91 Identities=23% Similarity=0.323 Sum_probs=55.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee---------------cCCCCceeee--------CCceeEEe--e--
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------KRSAGKQLSF--------QDKAYTVE--E-- 93 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s---------------~~s~G~~~~~--------~~~~~~v~--~-- 93 (279)
||.|+|+ |-+|.++++.|...++. ++..+-. .+..|++-.. ....+.+. +
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~--~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~ 77 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVG--KITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEG 77 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCC--EEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeee
Confidence 5899995 99999999999987543 3433421 1222321110 01122222 2
Q ss_pred cCc----cCCCCCcEEEecCCCchhhhhHH-HHHhCCCEEEEcCCC
Q 023678 94 LTE----DSFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNSSA 134 (279)
Q Consensus 94 ~d~----~~~~~~DvVf~a~g~~~s~~~~~-~~~~aG~~VIDlS~~ 134 (279)
++. +.+.+.|+||.|.+...++.... .+.+.|+++||....
T Consensus 78 ~~~~~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~ 123 (143)
T cd01483 78 ISEDNLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGL 123 (143)
T ss_pred cChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 111 23578999999999877665554 446789999986654
No 175
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.84 E-value=0.0055 Score=56.44 Aligned_cols=87 Identities=16% Similarity=0.191 Sum_probs=50.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhh-hhH
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISK-KFG 118 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~-~~~ 118 (279)
||+||| .|.+|+.+.+.|.+++| ++... +++. .+.-.+......... + .+.+.++|+||+|++..... ..+
T Consensus 1 ~IgvIG-~G~mG~~iA~~l~~~G~---~V~~~-dr~~-~~~~~~~~~g~~~~~-~~~~~~~~aDivi~~vp~~~~~~~v~ 73 (291)
T TIGR01505 1 KVGFIG-LGIMGSPMSINLAKAGY---QLHVT-TIGP-EVADELLAAGAVTAE-TARQVTEQADVIFTMVPDSPQVEEVA 73 (291)
T ss_pred CEEEEE-ecHHHHHHHHHHHHCCC---eEEEE-cCCH-HHHHHHHHCCCcccC-CHHHHHhcCCEEEEecCCHHHHHHHH
Confidence 589999 79999999999998765 34433 3321 110000000011111 1 13356899999999976332 221
Q ss_pred ------HHHHhCCCEEEEcCCC
Q 023678 119 ------PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 119 ------~~~~~aG~~VIDlS~~ 134 (279)
......|..|||.|..
T Consensus 74 ~~~~~~~~~~~~g~iivd~st~ 95 (291)
T TIGR01505 74 FGENGIIEGAKPGKTLVDMSSI 95 (291)
T ss_pred cCcchHhhcCCCCCEEEECCCC
Confidence 1223568889998764
No 176
>PRK06813 homoserine dehydrogenase; Validated
Probab=95.82 E-value=0.024 Score=54.28 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=54.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-------CCceEEEEEeecCCC-----Cceeee----CCceeEEe---ecCccC-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSA-----GKQLSF----QDKAYTVE---ELTEDS- 98 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-------~p~~~l~~l~s~~s~-----G~~~~~----~~~~~~v~---~~d~~~- 98 (279)
+++|+|+| .|.||+.++++|.++. --.++++.++.++.. |-.+.. ......+. ..+.++
T Consensus 2 ~i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 2 KIKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred eeEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 47999999 8999999999986541 024566666543211 111100 00000000 101111
Q ss_pred C---CCCcEEEecCCC-----chhhhhHHHHHhCCCEEE
Q 023678 99 F---DGVDIALFSAGG-----SISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 99 ~---~~~DvVf~a~g~-----~~s~~~~~~~~~aG~~VI 129 (279)
+ .+.|||+.|+++ +.+..+..+++++|+.||
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVV 119 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIV 119 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEE
Confidence 1 157999999765 567889899999999999
No 177
>PRK05442 malate dehydrogenase; Provisional
Probab=95.82 E-value=0.027 Score=53.42 Aligned_cols=74 Identities=20% Similarity=0.362 Sum_probs=45.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCC----CCceeeeCC------ceeEEeecCccCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRS----AGKQLSFQD------KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s----~G~~~~~~~------~~~~v~~~d~~~~~~~D 103 (279)
++.||+|+||+|.||..++-.|..++. ...+++++..... .|..+...+ ....+..-+.+++.++|
T Consensus 3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daD 82 (326)
T PRK05442 3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDAD 82 (326)
T ss_pred CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCC
Confidence 357999999999999999988776532 1126777743222 233222111 12233322346688999
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+|+.+.|.
T Consensus 83 iVVitaG~ 90 (326)
T PRK05442 83 VALLVGAR 90 (326)
T ss_pred EEEEeCCC
Confidence 99998874
No 178
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.80 E-value=0.044 Score=49.61 Aligned_cols=31 Identities=23% Similarity=0.499 Sum_probs=24.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+|.|.||||++|+.|++.|.+++ +..++..+
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~-~~~~v~~~ 31 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEH-PDAEVIVL 31 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhC-CCCEEEEe
Confidence 58999999999999999998763 23566555
No 179
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.79 E-value=0.027 Score=51.65 Aligned_cols=95 Identities=18% Similarity=0.291 Sum_probs=56.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--C--Cc--------eeeeCC-----------ceeEEeec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--A--GK--------QLSFQD-----------KAYTVEEL 94 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~--G~--------~~~~~~-----------~~~~v~~~ 94 (279)
++.||+||| .|++|..+...|..+++ ++..+. ++. . ++ .+...+ ..+.+. .
T Consensus 2 ~~~kI~VIG-~G~mG~~ia~~la~~g~---~V~~~d-~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~-~ 75 (282)
T PRK05808 2 GIQKIGVIG-AGTMGNGIAQVCAVAGY---DVVMVD-ISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGT-T 75 (282)
T ss_pred CccEEEEEc-cCHHHHHHHHHHHHCCC---ceEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-C
Confidence 345899999 59999999999998865 344442 211 0 00 000011 012222 1
Q ss_pred CccCCCCCcEEEecCCCchh--hhhHHHH---HhCCCEEEEcCCCCCCC
Q 023678 95 TEDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 95 d~~~~~~~DvVf~a~g~~~s--~~~~~~~---~~aG~~VIDlS~~~R~~ 138 (279)
+.+.+.++|+||.|++.... .+...++ +..++.++.+++.....
T Consensus 76 ~~~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 76 DLDDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred CHHHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 22346789999999986544 4455444 34577777777776543
No 180
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=95.76 E-value=0.015 Score=53.96 Aligned_cols=88 Identities=11% Similarity=0.145 Sum_probs=53.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccC-C---CCCcEEEecCCCc-h
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDS-F---DGVDIALFSAGGS-I 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~-~---~~~DvVf~a~g~~-~ 113 (279)
|||+||| .|.+|..+.+.|.+++| ++... .++.. -..+...+ ....+ +.++ . +.+|+||.|++.. .
T Consensus 1 m~Ig~IG-lG~mG~~mA~~L~~~g~---~v~v~-dr~~~~~~~~~~~g--~~~~~-s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 1 MKLGLIG-LGKMGGNMAERLREDGH---EVVGY-DVNQEAVDVAGKLG--ITARH-SLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred CEEEEEc-ccHHHHHHHHHHHhCCC---EEEEE-ECCHHHHHHHHHCC--CeecC-CHHHHHHhCCCCCEEEEEecCchH
Confidence 4799999 79999999999988754 44433 33211 01111111 11111 1112 2 2369999999987 5
Q ss_pred hhhhHHHH---HhCCCEEEEcCCCC
Q 023678 114 SKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 114 s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
.++....+ +..|..|||.|...
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~ 97 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSR 97 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCC
Confidence 56655544 34688999997653
No 181
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=95.74 E-value=0.035 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.611 Sum_probs=20.6
Q ss_pred EEEECcCcHHHHHHHHHHHcCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|.|.||||++|+.|++.|.++++
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~ 23 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI 23 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC
Confidence 57999999999999999998853
No 182
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.74 E-value=0.031 Score=52.09 Aligned_cols=94 Identities=18% Similarity=0.290 Sum_probs=61.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|+++.+|+-+..+|.++ ...+..+.++. + ++ .+....+|+||.|+|... -+
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~---gatVtv~~s~t---~------------~l-~~~~~~ADIVIsAvg~p~--~i 215 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQK---NASVTILHSRS---K------------DM-ASYLKDADVIVSAVGKPG--LV 215 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHC---CCeEEEEeCCc---h------------hH-HHHHhhCCEEEECCCCCc--cc
Confidence 3579999999999999999999876 34555554321 0 11 123468999999998752 13
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||.+... ..++ -.+-.++.+.++.
T Consensus 216 ~~~~vk~gavVIDvGi~~-~~~g--kl~GDvd~~~~~~ 250 (286)
T PRK14175 216 TKDVVKEGAVIIDVGNTP-DENG--KLKGDVDYDAVKE 250 (286)
T ss_pred CHHHcCCCcEEEEcCCCc-CCCC--CeecCccHHHHHh
Confidence 334567899999998753 1122 1445566565553
No 183
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=95.72 E-value=0.014 Score=54.34 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=51.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchh-hhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS-KKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s-~~~ 117 (279)
|||++|| .|..|..+.+.|.+.+| ++... .++.....+...+ ....+ ++ +...++|+||.|++.... ++.
T Consensus 1 m~Ig~IG-lG~MG~~ma~~L~~~G~---~v~v~-~~~~~~~~~~~~g--~~~~~-s~~~~~~~advVi~~v~~~~~v~~v 72 (292)
T PRK15059 1 MKLGFIG-LGIMGTPMAINLARAGH---QLHVT-TIGPVADELLSLG--AVSVE-TARQVTEASDIIFIMVPDTPQVEEV 72 (292)
T ss_pred CeEEEEc-cCHHHHHHHHHHHHCCC---eEEEE-eCCHhHHHHHHcC--CeecC-CHHHHHhcCCEEEEeCCChHHHHHH
Confidence 4799999 89999999999998865 33333 2221111111111 11111 12 224678999999998733 332
Q ss_pred H------HHHHhCCCEEEEcCCCC
Q 023678 118 G------PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 118 ~------~~~~~aG~~VIDlS~~~ 135 (279)
. ......|..|||.|..-
T Consensus 73 ~~~~~g~~~~~~~g~ivvd~sT~~ 96 (292)
T PRK15059 73 LFGENGCTKASLKGKTIVDMSSIS 96 (292)
T ss_pred HcCCcchhccCCCCCEEEECCCCC
Confidence 2 11234688899998653
No 184
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.69 E-value=0.026 Score=53.43 Aligned_cols=72 Identities=21% Similarity=0.372 Sum_probs=42.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCC----ceEEEEEeecC--C--CCceeeeCC------ceeEEeecCccCCCCCcEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKR--S--AGKQLSFQD------KAYTVEELTEDSFDGVDIA 105 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p----~~~l~~l~s~~--s--~G~~~~~~~------~~~~v~~~d~~~~~~~DvV 105 (279)
.||+|+||+|.||..+...|..++.- ..+++++.... . .|......+ ....+..-+.+++.++|+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999999999999999999876321 12466664322 1 122111111 1122222223567899999
Q ss_pred EecCCC
Q 023678 106 LFSAGG 111 (279)
Q Consensus 106 f~a~g~ 111 (279)
+.+.|.
T Consensus 81 VitAG~ 86 (323)
T cd00704 81 ILVGAF 86 (323)
T ss_pred EEeCCC
Confidence 998775
No 185
>PLN02602 lactate dehydrogenase
Probab=95.67 E-value=0.03 Score=53.67 Aligned_cols=85 Identities=21% Similarity=0.352 Sum_probs=50.3
Q ss_pred CCcceeeee-cccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeeeCC-----ceeEEee-c
Q 023678 24 TKPMFTRVR-MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQD-----KAYTVEE-L 94 (279)
Q Consensus 24 ~~~~~~~~~-~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~~~-----~~~~v~~-~ 94 (279)
++||--... |.+. +..||+|||| |.||..+.-.|...+. ..+++++..... .|......+ ....+.. .
T Consensus 22 ~~~~~~~~~~m~~~-~~~KI~IIGa-G~VG~~~a~~l~~~~l-~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~ 98 (350)
T PLN02602 22 FKPIHNSSPPSPTR-RHTKVSVVGV-GNVGMAIAQTILTQDL-ADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILAST 98 (350)
T ss_pred hhcccccccccccC-CCCEEEEECC-CHHHHHHHHHHHhCCC-CCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCC
Confidence 455554444 5221 1269999996 9999999998887732 236666643222 232221111 0134433 2
Q ss_pred CccCCCCCcEEEecCCC
Q 023678 95 TEDSFDGVDIALFSAGG 111 (279)
Q Consensus 95 d~~~~~~~DvVf~a~g~ 111 (279)
+.+++.++|+|+.+.|.
T Consensus 99 dy~~~~daDiVVitAG~ 115 (350)
T PLN02602 99 DYAVTAGSDLCIVTAGA 115 (350)
T ss_pred CHHHhCCCCEEEECCCC
Confidence 34567899999999875
No 186
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.60 E-value=0.045 Score=51.02 Aligned_cols=92 Identities=17% Similarity=0.293 Sum_probs=62.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|+|||.+|.+|+-|..+|.+++ ..+....++. + +. +....+|+|+.|+|.... +
T Consensus 158 Gk~v~vIG~S~ivG~Pla~lL~~~g---atVtv~~s~t---~--------------~l~~~~~~ADIVI~avg~~~~--v 215 (284)
T PRK14179 158 GKHAVVIGRSNIVGKPMAQLLLDKN---ATVTLTHSRT---R--------------NLAEVARKADILVVAIGRGHF--V 215 (284)
T ss_pred CCEEEEECCCCcCcHHHHHHHHHCC---CEEEEECCCC---C--------------CHHHHHhhCCEEEEecCcccc--C
Confidence 5799999999999999999998764 3333332211 0 11 224679999999987643 3
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||.+-.+- .++ -++-.|+.+.++.
T Consensus 216 ~~~~ik~GavVIDvgin~~-~~g--kl~GDVdf~~v~~ 250 (284)
T PRK14179 216 TKEFVKEGAVVIDVGMNRD-ENG--KLIGDVDFDEVAE 250 (284)
T ss_pred CHHHccCCcEEEEecceec-CCC--CeecCccHHHHHh
Confidence 3456889999999976642 222 2556677666553
No 187
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=95.58 E-value=0.022 Score=52.23 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=23.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.++|.|.||||++|+.|++.|.++++
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~ 29 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY 29 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC
Confidence 46899999999999999999998865
No 188
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=95.56 E-value=0.043 Score=50.24 Aligned_cols=92 Identities=15% Similarity=0.178 Sum_probs=53.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCc-----eeEE--eec-CccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK-----AYTV--EEL-TEDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~-----~~~v--~~~-d~~~~~~~DvVf~a~g~ 111 (279)
|||+|+| .|.+|..+...|.+.+| ++.++..+...-..+...+. +... ... +.....++|+||.|+++
T Consensus 1 m~I~IiG-~G~~G~~~a~~L~~~g~---~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vila~k~ 76 (304)
T PRK06522 1 MKIAILG-AGAIGGLFGAALAQAGH---DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAELGPQDLVILAVKA 76 (304)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC---eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHcCCCCEEEEeccc
Confidence 5899999 59999999999988764 44444321111001110111 1111 111 12223678999999998
Q ss_pred chhhhhHHHHHh---CCCEEEEcCCCC
Q 023678 112 SISKKFGPIAVE---KGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~s~~~~~~~~~---aG~~VIDlS~~~ 135 (279)
....+..+.+.. .+..||.+...+
T Consensus 77 ~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 77 YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 877666665543 456777665544
No 189
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.55 E-value=0.031 Score=49.47 Aligned_cols=84 Identities=18% Similarity=0.263 Sum_probs=55.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEe--ecCccCCCCCcEEEecCCCc-h
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGS-I 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~--~~d~~~~~~~DvVf~a~g~~-~ 113 (279)
..+|.|+| .|.+|..-++.|.+.+ .++.++ +.+.... .+...+ .+.+. +.+..++.++|+||.|++.. .
T Consensus 9 gk~vlVvG-gG~va~rk~~~Ll~~g---a~VtVv-sp~~~~~l~~l~~~~-~i~~~~~~~~~~dl~~~~lVi~at~d~~l 82 (205)
T TIGR01470 9 GRAVLVVG-GGDVALRKARLLLKAG---AQLRVI-AEELESELTLLAEQG-GITWLARCFDADILEGAFLVIAATDDEEL 82 (205)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHHCC---CEEEEE-cCCCCHHHHHHHHcC-CEEEEeCCCCHHHhCCcEEEEECCCCHHH
Confidence 46999999 5999999999998864 344445 3322111 111111 23332 33445678899999999986 6
Q ss_pred hhhhHHHHHhCCCEE
Q 023678 114 SKKFGPIAVEKGSIV 128 (279)
Q Consensus 114 s~~~~~~~~~aG~~V 128 (279)
..++...+.+.|+.|
T Consensus 83 n~~i~~~a~~~~ilv 97 (205)
T TIGR01470 83 NRRVAHAARARGVPV 97 (205)
T ss_pred HHHHHHHHHHcCCEE
Confidence 677788888899887
No 190
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.51 E-value=0.12 Score=48.08 Aligned_cols=91 Identities=16% Similarity=0.345 Sum_probs=52.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCceeeeCCceeEEe---ec-CccCCCCCcEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSFQDKAYTVE---EL-TEDSFDGVDIAL 106 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~~~~~~~~~~~v~---~~-d~~~~~~~DvVf 106 (279)
|..|||+|+| .|.+|..+...|.+.+| ++.++. |+. .|..+.....+..+. .. +.++...+|+||
T Consensus 3 ~~~m~I~IiG-~GaiG~~lA~~L~~~g~---~V~~~~-r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 77 (313)
T PRK06249 3 SETPRIGIIG-TGAIGGFYGAMLARAGF---DVHFLL-RSDYEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVL 77 (313)
T ss_pred CcCcEEEEEC-CCHHHHHHHHHHHHCCC---eEEEEE-eCCHHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEE
Confidence 3457999999 69999999999988754 344443 322 121111101111111 11 122345789999
Q ss_pred ecCCCchhhhhHHHH---HhCCCEEEEcC
Q 023678 107 FSAGGSISKKFGPIA---VEKGSIVVDNS 132 (279)
Q Consensus 107 ~a~g~~~s~~~~~~~---~~aG~~VIDlS 132 (279)
.|+......+..+.+ +..+..||.+-
T Consensus 78 lavK~~~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 78 VGLKTTANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred EEecCCChHhHHHHHhhhcCCCCEEEEec
Confidence 999987666555444 33455666553
No 191
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.50 E-value=0.048 Score=55.40 Aligned_cols=33 Identities=30% Similarity=0.413 Sum_probs=25.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
|||.|.||||++|+.|++.|.++. ...++..+.
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~-~g~~V~~l~ 33 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRR-REATVHVLV 33 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcC-CCCEEEEEE
Confidence 489999999999999999998421 234555554
No 192
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.50 E-value=0.062 Score=47.40 Aligned_cols=84 Identities=12% Similarity=0.131 Sum_probs=52.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-e-CCceeEEe--ecCccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-F-QDKAYTVE--ELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~-~~~~~~v~--~~d~~~~~~~DvVf~a~g~~~s 114 (279)
..+|.|+| .|-+|...++.|.+.+ .++.++ ++.. ...+. . ....+... .+...++.++|+||.|++....
T Consensus 10 ~k~vLVIG-gG~va~~ka~~Ll~~g---a~V~VI-s~~~-~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~el 83 (202)
T PRK06718 10 NKRVVIVG-GGKVAGRRAITLLKYG---AHIVVI-SPEL-TENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRV 83 (202)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC---CeEEEE-cCCC-CHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHH
Confidence 46999999 5999999999998874 355555 3322 11111 0 01112222 2334567889999999998766
Q ss_pred hhhHHHHHhCCCEE
Q 023678 115 KKFGPIAVEKGSIV 128 (279)
Q Consensus 115 ~~~~~~~~~aG~~V 128 (279)
.+.+...+++|..|
T Consensus 84 N~~i~~~a~~~~lv 97 (202)
T PRK06718 84 NEQVKEDLPENALF 97 (202)
T ss_pred HHHHHHHHHhCCcE
Confidence 55555555667644
No 193
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.48 E-value=0.054 Score=49.67 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=52.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeeeC-CceeEEeecCccC----C--CCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSFQ-DKAYTVEELTEDS----F--DGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~~-~~~~~v~~~d~~~----~--~~~DvVf~a~g~ 111 (279)
|+|.|+|+||+ |+.|.+.|.+.+|+ +.+.. +...|. .+... ...+....++.+. + .+.|+|+.|+-.
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~---v~~s~-~t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHP 75 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIE---ILVTV-TTSEGKHLYPIHQALTVHTGALDPQELREFLKRHSIDILVDATHP 75 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCe---EEEEE-ccCCccccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCH
Confidence 58999999999 99999999877543 32222 222232 22211 2233333344221 2 368999999875
Q ss_pred c---hhhhhHHHHHhCCCEEEEc
Q 023678 112 S---ISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 112 ~---~s~~~~~~~~~aG~~VIDl 131 (279)
. +|+.....+.+.|...|.+
T Consensus 76 fA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 76 FAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred HHHHHHHHHHHHHHHhCCcEEEE
Confidence 4 3444455556788877755
No 194
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.45 E-value=0.045 Score=51.70 Aligned_cols=68 Identities=22% Similarity=0.390 Sum_probs=43.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeec--CCCCceeeeC------CceeEEee-cCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASK--RSAGKQLSFQ------DKAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~--~s~G~~~~~~------~~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
+||+|+|| |.||+.++-.|... ... +++++.-. ...|..+... .....+.. -+-+++.++|+|+.+.
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~--~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQ--GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcc--cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 58999998 99999999999776 444 77666432 2223322211 12233333 2245678999999998
Q ss_pred C
Q 023678 110 G 110 (279)
Q Consensus 110 g 110 (279)
|
T Consensus 78 G 78 (313)
T COG0039 78 G 78 (313)
T ss_pred C
Confidence 5
No 195
>PRK06196 oxidoreductase; Provisional
Probab=95.41 E-value=0.067 Score=49.48 Aligned_cols=31 Identities=16% Similarity=0.179 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||||.+|+++.+.|.++++ +++++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~G~---~Vv~~ 56 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQAGA---HVIVP 56 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
No 196
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=95.41 E-value=0.041 Score=51.86 Aligned_cols=70 Identities=24% Similarity=0.429 Sum_probs=45.1
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC--ceeEEee---cC--ccCCCCCcEEEecCCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD--KAYTVEE---LT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~--~~~~v~~---~d--~~~~~~~DvVf~a~g~ 111 (279)
||+|+||+|.||..+.-.|..+++ ..+++++.-.+..|..+...+ ....+.. -+ .+++.++|+|+.+.|.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~-~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~ 77 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPY-VSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGV 77 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCC-CcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCC
Confidence 699999999999999998877632 246777743333343332211 1123332 11 3568899999999875
No 197
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.39 E-value=0.028 Score=53.29 Aligned_cols=93 Identities=16% Similarity=0.282 Sum_probs=58.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeee--------CCcee--EEe-ecCc-cCCCCCcEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSF--------QDKAY--TVE-ELTE-DSFDGVDIA 105 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~--------~~~~~--~v~-~~d~-~~~~~~DvV 105 (279)
++||+|+| .|..|..|...|.+.+|+ +. +.+++. .-..+.. ++..+ .+. ..|. +..+++|++
T Consensus 1 ~~kI~ViG-aGswGTALA~~la~ng~~---V~-lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~i 75 (329)
T COG0240 1 MMKIAVIG-AGSWGTALAKVLARNGHE---VR-LWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADII 75 (329)
T ss_pred CceEEEEc-CChHHHHHHHHHHhcCCe---eE-EEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEE
Confidence 37899999 599999999999988643 22 333331 0001111 11100 011 1121 234679999
Q ss_pred EecCCCchhhhhHHHH---HhCCCEEEEcCCCCC
Q 023678 106 LFSAGGSISKKFGPIA---VEKGSIVVDNSSAFR 136 (279)
Q Consensus 106 f~a~g~~~s~~~~~~~---~~aG~~VIDlS~~~R 136 (279)
++++|+..-++++.++ +..+.++|-++--+-
T Consensus 76 v~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie 109 (329)
T COG0240 76 VIAVPSQALREVLRQLKPLLLKDAIIVSATKGLE 109 (329)
T ss_pred EEECChHHHHHHHHHHhhhccCCCeEEEEecccc
Confidence 9999999888888875 367888887776663
No 198
>PRK06182 short chain dehydrogenase; Validated
Probab=95.39 E-value=0.08 Score=47.58 Aligned_cols=32 Identities=13% Similarity=0.257 Sum_probs=26.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..+|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~---~V~~~ 33 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY---TVYGA 33 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 356899999999999999999988754 45444
No 199
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=95.37 E-value=0.035 Score=51.19 Aligned_cols=66 Identities=23% Similarity=0.445 Sum_probs=38.9
Q ss_pred EECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eee-eCCceeEEeecC-c----cCCCCCcEEEecCC
Q 023678 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS-FQDKAYTVEELT-E----DSFDGVDIALFSAG 110 (279)
Q Consensus 44 IiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~-~~~~~~~v~~~d-~----~~~~~~DvVf~a~g 110 (279)
|.||+|++|+.|++.|.+++. ..+++.+........ ... .....+...|+. . +.+.++|+||-+..
T Consensus 2 VTGgsGflG~~iv~~Ll~~g~-~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa 75 (280)
T PF01073_consen 2 VTGGSGFLGSHIVRQLLERGY-IYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAA 75 (280)
T ss_pred EEcCCcHHHHHHHHHHHHCCC-ceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCc
Confidence 799999999999999998852 466665532221111 011 111112223432 2 24679999999853
No 200
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=95.35 E-value=0.074 Score=49.61 Aligned_cols=90 Identities=14% Similarity=0.141 Sum_probs=58.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-C--CCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-D--GVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~--~~DvVf~a~g~~~s~ 115 (279)
.-||.|.|.||..|+.+++.|..-+++ ++.-.+.+.-+..+ + + +.... +..++ . +.|+++.++|.....
T Consensus 6 ~~~~~~~g~~~~~~~~~~~~~~~~g~~---~v~~V~p~~~~~~v-~-G--~~~y~-sv~dlp~~~~~Dlavi~vpa~~v~ 77 (286)
T TIGR01019 6 DTKVIVQGITGSQGSFHTEQMLAYGTN---IVGGVTPGKGGTTV-L-G--LPVFD-SVKEAVEETGANASVIFVPAPFAA 77 (286)
T ss_pred CCcEEEecCCcHHHHHHHHHHHhCCCC---EEEEECCCCCccee-c-C--eeccC-CHHHHhhccCCCEEEEecCHHHHH
Confidence 368999999999999999999877555 33332322111111 0 1 11111 11122 2 379999999999999
Q ss_pred hhHHHHHhCCCE-EEEcCCCCC
Q 023678 116 KFGPIAVEKGSI-VVDNSSAFR 136 (279)
Q Consensus 116 ~~~~~~~~aG~~-VIDlS~~~R 136 (279)
+.+.++.++|++ +|=+|+-|.
T Consensus 78 ~~l~e~~~~Gvk~avIis~Gf~ 99 (286)
T TIGR01019 78 DAIFEAIDAGIELIVCITEGIP 99 (286)
T ss_pred HHHHHHHHCCCCEEEEECCCCC
Confidence 999999999984 334777774
No 201
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.35 E-value=0.09 Score=50.66 Aligned_cols=99 Identities=13% Similarity=0.213 Sum_probs=59.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC----ceEEEEEeecCCC--Ccee----e--------eCCc----eeEEeecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKRSA--GKQL----S--------FQDK----AYTVEELT 95 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p----~~~l~~l~s~~s~--G~~~----~--------~~~~----~~~v~~~d 95 (279)
+++||+|+| +|..|..|...|.+.+.. ..++.. ..++.. ++.+ . .++. ++.... |
T Consensus 10 ~~~ki~ViG-aG~wGtAlA~~l~~n~~~~~~~~~~V~l-w~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ts-d 86 (365)
T PTZ00345 10 GPLKVSVIG-SGNWGSAISKVVGENTQRNYIFHNEVRM-WVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVS-D 86 (365)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhcCCcccCCCCeEEE-EEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEec-C
Confidence 357999999 699999999999876410 013322 333331 1111 0 0111 122221 2
Q ss_pred -ccCCCCCcEEEecCCCchhhhhHHHHHh-----CCCEEEEcCCCCCCCC
Q 023678 96 -EDSFDGVDIALFSAGGSISKKFGPIAVE-----KGSIVVDNSSAFRMVE 139 (279)
Q Consensus 96 -~~~~~~~DvVf~a~g~~~s~~~~~~~~~-----aG~~VIDlS~~~R~~~ 139 (279)
.+..+++|++++|+|+...++.+.++.. .+..||..+.-+..+.
T Consensus 87 l~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t 136 (365)
T PTZ00345 87 LKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVEN 136 (365)
T ss_pred HHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCC
Confidence 1345789999999999988888877653 3557887777765443
No 202
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=95.34 E-value=0.023 Score=52.84 Aligned_cols=83 Identities=14% Similarity=0.219 Sum_probs=48.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecC--ccCCC--CCcEEEecCC-----
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT--EDSFD--GVDIALFSAG----- 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d--~~~~~--~~DvVf~a~g----- 110 (279)
|||.|+|++|.+|.+|.+.|. +..++..+.. .+ +++.+.+ .+.+. .-|+|+-|..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~----~~~~v~a~~~-~~-----------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~vD 64 (281)
T COG1091 1 MKILITGANGQLGTELRRALP----GEFEVIATDR-AE-----------LDITDPDAVLEVIRETRPDVVINAAAYTAVD 64 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC----CCceEEeccC-cc-----------ccccChHHHHHHHHhhCCCEEEECccccccc
Confidence 459999999999999999986 3456655532 22 1121111 00111 2355554432
Q ss_pred -------------CchhhhhHHHHHhCCCEEEEcCCCCCCC
Q 023678 111 -------------GSISKKFGPIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 111 -------------~~~s~~~~~~~~~aG~~VIDlS~~~R~~ 138 (279)
..-+..++..+.+.|+++|=.|.||=||
T Consensus 65 ~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFD 105 (281)
T COG1091 65 KAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFD 105 (281)
T ss_pred cccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEec
Confidence 2223445556677899888788777665
No 203
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.33 E-value=0.09 Score=44.98 Aligned_cols=119 Identities=20% Similarity=0.292 Sum_probs=66.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+.++|.|+|.++.||+-|..+|.++ ...+...-+.. +.+ .+....+|+|+.|.|...- +
T Consensus 35 ~Gk~v~VvGrs~~VG~Pla~lL~~~---~atVt~~h~~T---~~l-------------~~~~~~ADIVVsa~G~~~~--i 93 (160)
T PF02882_consen 35 EGKKVVVVGRSNIVGKPLAMLLLNK---GATVTICHSKT---KNL-------------QEITRRADIVVSAVGKPNL--I 93 (160)
T ss_dssp TT-EEEEE-TTTTTHHHHHHHHHHT---T-EEEEE-TTS---SSH-------------HHHHTTSSEEEE-SSSTT---B
T ss_pred CCCEEEEECCcCCCChHHHHHHHhC---CCeEEeccCCC---Ccc-------------cceeeeccEEeeeeccccc--c
Confidence 3579999999999999999999886 33333332211 000 1123678999999886422 2
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEE-ECC-CChHHHHHHhhhchhh
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALI-ANP-NCSTIICLMAATPLHR 185 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iV-anP-gC~tt~l~laL~PL~~ 185 (279)
-....+.|+.|||.+-.+- ....-++-.++.+.++. ....+ ..| |.-+...++.++-+.+
T Consensus 94 ~~~~ik~gavVIDvG~~~~--~~~~~~~GDv~~~~~~~------~a~~itPvPgGVGplT~a~L~~N~v~ 155 (160)
T PF02882_consen 94 KADWIKPGAVVIDVGINYV--PGDGKLVGDVDFESVKE------KASAITPVPGGVGPLTVAMLMKNLVK 155 (160)
T ss_dssp -GGGS-TTEEEEE--CEEE--TTTTEEEESB-HHHHHT------TCSEEE-SSSSCHHHHHHHHHHHHHH
T ss_pred ccccccCCcEEEecCCccc--cccceeeecccHHHhhc------cceEEeeCCCCccHHHHHHHHHHHHH
Confidence 2334578999999987652 12234566777666664 33333 333 5666666666655544
No 204
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.25 E-value=0.046 Score=51.50 Aligned_cols=70 Identities=17% Similarity=0.341 Sum_probs=44.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeecCC--CCceeeeCC-----ceeEEeecCccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRS--AGKQLSFQD-----KAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~~s--~G~~~~~~~-----~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
.+||+|+|| |.||..+.-.|... +.. +++++..... .|......+ ....+..-+.+++.++|+|+++.|
T Consensus 6 ~~ki~iiGa-G~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 6 HNKVVLVGD-GAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 479999998 99999999998877 454 5666643222 122211110 123333323456889999999987
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 83 ~ 83 (315)
T PRK00066 83 A 83 (315)
T ss_pred C
Confidence 5
No 205
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=95.23 E-value=0.094 Score=53.89 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=27.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.+||.|.||||++|+.|++.|.+++ +..+++.+.
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g-~~~~V~~~d 39 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNY-PDYKIVVLD 39 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhC-CCCEEEEEe
Confidence 4799999999999999999998764 245665553
No 206
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.21 E-value=0.066 Score=47.85 Aligned_cols=91 Identities=19% Similarity=0.226 Sum_probs=56.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe----ec-----------CCCCceeee--------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SK-----------RSAGKQLSF--------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~----s~-----------~s~G~~~~~--------~~~~~~v~~-- 93 (279)
..||.|+| .|-+|.++++.|...|...+ .++. +. +..|+.-.. ....+.+..
T Consensus 21 ~~~VlivG-~GglGs~va~~La~~Gvg~i--~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~ 97 (228)
T cd00757 21 NARVLVVG-AGGLGSPAAEYLAAAGVGKL--GLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN 97 (228)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEE--EEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence 46899999 59999999999998855433 3331 11 123321110 011122221
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
++. +.+.++|+||.|++...++.+..++ .+.|+++|+.+
T Consensus 98 ~~i~~~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g 143 (228)
T cd00757 98 ERLDAENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGA 143 (228)
T ss_pred ceeCHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 211 2246899999999988777766554 67889998864
No 207
>PLN00203 glutamyl-tRNA reductase
Probab=95.20 E-value=0.044 Score=55.13 Aligned_cols=96 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eee--eCCceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLS--FQDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~--~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
..+|+|+|+ |-+|+.+++.|..++ ..++.++ .|. ..+ .+. +++..+.+...+ .+.+.++|+||+|++..
T Consensus 266 ~kkVlVIGA-G~mG~~~a~~L~~~G--~~~V~V~-nRs-~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 266 SARVLVIGA-GKMGKLLVKHLVSKG--CTKMVVV-NRS-EERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred CCEEEEEeC-HHHHHHHHHHHHhCC--CCeEEEE-eCC-HHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 468999995 999999999998874 3344444 332 221 111 112122233322 12356899999998765
Q ss_pred ---hhhhhHHHHHhC----C--CEEEEcCCCCCCCC
Q 023678 113 ---ISKKFGPIAVEK----G--SIVVDNSSAFRMVE 139 (279)
Q Consensus 113 ---~s~~~~~~~~~a----G--~~VIDlS~~~R~~~ 139 (279)
+.+++++.+... | ..+||++=+--.++
T Consensus 341 ~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdIdp 376 (519)
T PLN00203 341 TPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVGA 376 (519)
T ss_pred CCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCcc
Confidence 356666665421 2 37999987743343
No 208
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=95.18 E-value=0.058 Score=53.24 Aligned_cols=89 Identities=17% Similarity=0.216 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCCCceee----eCCce----------------------eEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLS----FQDKA----------------------YTV 91 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~G~~~~----~~~~~----------------------~~v 91 (279)
.+||+|+|+||-||...++.+.++ |+ ++++.++..+....... |.-+. ..+
T Consensus 57 ~KkI~ILGSTGSIGtqtLdVI~~~--pd~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~v 134 (454)
T PLN02696 57 PKPISLLGSTGSIGTQTLDIVAEN--PDKFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEI 134 (454)
T ss_pred ccEEEEecCCcHhhHHHHHHHHhC--ccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEE
Confidence 479999999999999999999877 54 88888865544322111 10000 011
Q ss_pred e-ecC----ccCCCCCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 92 E-ELT----EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 92 ~-~~d----~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
. ..+ .....++|+|+.+......-.-.-.++++|..|.
T Consensus 135 l~G~egl~~la~~~evDiVV~AIvG~aGL~pTl~AIkaGK~VA 177 (454)
T PLN02696 135 IPGEEGIVEVARHPEAVTVVTGIVGCAGLKPTVAAIEAGKDIA 177 (454)
T ss_pred EECHHHHHHHHcCCCCCEEEEeCccccchHHHHHHHHCCCcEE
Confidence 1 000 0112468999999876544444456788998765
No 209
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=95.18 E-value=0.064 Score=50.12 Aligned_cols=26 Identities=12% Similarity=0.321 Sum_probs=23.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|++|.|.||||++|+.|++.|.++++
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~ 26 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETS 26 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCC
Confidence 35899999999999999999998754
No 210
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=95.16 E-value=0.058 Score=50.24 Aligned_cols=87 Identities=18% Similarity=0.036 Sum_probs=52.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee--cCCCCceeee-CC-ceeEEeecC-c-cC--CCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS--KRSAGKQLSF-QD-KAYTVEELT-E-DS--FDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s--~~s~G~~~~~-~~-~~~~v~~~d-~-~~--~~~~DvVf~a~g~ 111 (279)
++|.+.| ||++|.+.+|.|..+ |.++++.... ....|+.+.. .+ .+.-|..-+ . .+ +...++++...-.
T Consensus 3 ~~vvqyG-tG~vGv~air~l~ak--pe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~ 79 (350)
T COG3804 3 LRVVQYG-TGSVGVAAIRGLLAK--PELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLP 79 (350)
T ss_pred ceeEEec-cchHHHHHHHHHHcC--CCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeecccc
Confidence 6799999 999999999999988 8999886543 3345665542 22 223332211 1 11 1122333333222
Q ss_pred chhhhhHHHHHhCCCEEEEc
Q 023678 112 SISKKFGPIAVEKGSIVVDN 131 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDl 131 (279)
+-+-.++++.+|..||--
T Consensus 80 --~~~~y~rlL~aGiNVv~~ 97 (350)
T COG3804 80 --SVDEYARLLRAGINVVTP 97 (350)
T ss_pred --hHHHHHHHHHcCCceecc
Confidence 234456788999999954
No 211
>PLN02778 3,5-epimerase/4-reductase
Probab=95.16 E-value=0.022 Score=52.67 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=24.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.+|||.|.||||++|+.|++.|.++++
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~ 34 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGI 34 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCC
Confidence 357999999999999999999998865
No 212
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=95.16 E-value=0.028 Score=54.98 Aligned_cols=96 Identities=21% Similarity=0.332 Sum_probs=56.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee--eCCceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--FQDKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
+..+|+|+| +|-+|+.+++.|...++ .++..+ +++... ..+. ++. .+..++ .+.+.++|+||.|+|..
T Consensus 181 ~~~~vlViG-aG~iG~~~a~~L~~~G~--~~V~v~-~r~~~ra~~la~~~g~---~~~~~~~~~~~l~~aDvVI~aT~s~ 253 (423)
T PRK00045 181 SGKKVLVIG-AGEMGELVAKHLAEKGV--RKITVA-NRTLERAEELAEEFGG---EAIPLDELPEALAEADIVISSTGAP 253 (423)
T ss_pred cCCEEEEEC-chHHHHHHHHHHHHCCC--CeEEEE-eCCHHHHHHHHHHcCC---cEeeHHHHHHHhccCCEEEECCCCC
Confidence 357999999 59999999999987643 233333 433211 1111 111 122211 12346789999999865
Q ss_pred h---hhhhHHHHHh----CCCEEEEcCCCCCCCCC
Q 023678 113 I---SKKFGPIAVE----KGSIVVDNSSAFRMVEN 140 (279)
Q Consensus 113 ~---s~~~~~~~~~----aG~~VIDlS~~~R~~~~ 140 (279)
. ..++++.+.. .+..+||++-+--.+++
T Consensus 254 ~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid~~ 288 (423)
T PRK00045 254 HPIIGKGMVERALKARRHRPLLLVDLAVPRDIEPE 288 (423)
T ss_pred CcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCccc
Confidence 3 3455555432 35689999865434443
No 213
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.14 E-value=0.055 Score=50.11 Aligned_cols=95 Identities=15% Similarity=0.200 Sum_probs=58.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec-CCCCc-----------eeeeCC----------ceeEEeecCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK-RSAGK-----------QLSFQD----------KAYTVEELTE 96 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~-~s~G~-----------~~~~~~----------~~~~v~~~d~ 96 (279)
+.||+|||+ |..|+.+...++.+||+ ++++... +...+ ....+. ..+.+. .+.
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~---V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~-~~~ 79 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVD---VLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFT-TDL 79 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCE---EEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEee-CCH
Confidence 358999995 99999999999988664 4444211 11001 000000 012221 123
Q ss_pred cCCCCCcEEEecCCCchhhhhH-----HHHH-hCCCEEEEcCCCCCCC
Q 023678 97 DSFDGVDIALFSAGGSISKKFG-----PIAV-EKGSIVVDNSSAFRMV 138 (279)
Q Consensus 97 ~~~~~~DvVf~a~g~~~s~~~~-----~~~~-~aG~~VIDlS~~~R~~ 138 (279)
++++++|+||.|.+.+...+.. ++.. ..|+.++++|+.+...
T Consensus 80 ~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~ 127 (286)
T PRK07819 80 GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIM 127 (286)
T ss_pred HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 4568999999999877553322 3445 6789999999998653
No 214
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.12 E-value=0.13 Score=46.58 Aligned_cols=91 Identities=19% Similarity=0.230 Sum_probs=56.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe----ec-----------CCCCceeee--------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SK-----------RSAGKQLSF--------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~----s~-----------~s~G~~~~~--------~~~~~~v~~-- 93 (279)
..||+|+|+ |-+|.++++.|...|.. ++.++. +. +..|++-.. ....+.+..
T Consensus 32 ~~~VliiG~-GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~ 108 (245)
T PRK05690 32 AARVLVVGL-GGLGCAASQYLAAAGVG--TLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN 108 (245)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCC--EEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999996 99999999999987544 333331 11 122321110 011222321
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
++. +.++++|+||.|++...++.++.++ .+.|..+|..+
T Consensus 109 ~~i~~~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~ 154 (245)
T PRK05690 109 ARLDDDELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGA 154 (245)
T ss_pred ccCCHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEee
Confidence 221 1257899999999988887766554 67899988743
No 215
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.11 E-value=0.038 Score=53.98 Aligned_cols=95 Identities=19% Similarity=0.266 Sum_probs=55.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce--ee--eCCceeEEeecCccCCCCCcEEEecCCCch-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ--LS--FQDKAYTVEELTEDSFDGVDIALFSAGGSI- 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~--~~--~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~- 113 (279)
..+|+|+|+ |-+|+.+++.|..++ ..++.++ +++. .+. +. ++...+.+.++ .+.+.++|+||+|++...
T Consensus 180 ~~~VlViGa-G~iG~~~a~~L~~~G--~~~V~v~-~rs~-~ra~~la~~~g~~~i~~~~l-~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 180 GKKALLIGA-GEMGELVAKHLLRKG--VGKILIA-NRTY-ERAEDLAKELGGEAVKFEDL-EEYLAEADIVISSTGAPHP 253 (417)
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCC--CCEEEEE-eCCH-HHHHHHHHHcCCeEeeHHHH-HHHHhhCCEEEECCCCCCc
Confidence 478999995 999999999998763 3344444 3322 111 11 11111111111 133468999999998653
Q ss_pred --hhhhHHHHHh---CCCEEEEcCCCCCCCC
Q 023678 114 --SKKFGPIAVE---KGSIVVDNSSAFRMVE 139 (279)
Q Consensus 114 --s~~~~~~~~~---aG~~VIDlS~~~R~~~ 139 (279)
..+++..+.. .++.+||++-+--.++
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~Prdid~ 284 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAVPRDVDP 284 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCCCCCCCh
Confidence 3455554433 2458999985533344
No 216
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=95.10 E-value=0.063 Score=49.55 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=23.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.++|.|.||||++|+.+++.|.++++
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~g~ 30 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLRGY 30 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 36899999999999999999998854
No 217
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.09 E-value=0.11 Score=48.56 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=62.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.++.||+-|..+|.+++ ..+....++. .++ .+....+|+|+.|+|... -+-
T Consensus 158 Gk~vvViGrs~iVGkPla~lL~~~~---atVt~~hs~t---------------~~l-~~~~~~ADIVV~avG~~~--~i~ 216 (285)
T PRK14189 158 GAHAVVIGRSNIVGKPMAMLLLQAG---ATVTICHSKT---------------RDL-AAHTRQADIVVAAVGKRN--VLT 216 (285)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCC---CEEEEecCCC---------------CCH-HHHhhhCCEEEEcCCCcC--ccC
Confidence 5799999999999999999998752 3433332210 011 123468999999999642 344
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
+...+.|+.|||.+-.+ ..++ -.+-.|+.+..+.
T Consensus 217 ~~~ik~gavVIDVGin~-~~~g--kl~GDVd~~~v~~ 250 (285)
T PRK14189 217 ADMVKPGATVIDVGMNR-DDAG--KLCGDVDFAGVKE 250 (285)
T ss_pred HHHcCCCCEEEEccccc-cCCC--CeeCCccHHHHHh
Confidence 57788999999988665 2222 2566677666553
No 218
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=95.07 E-value=0.051 Score=50.46 Aligned_cols=69 Identities=23% Similarity=0.447 Sum_probs=40.0
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeE-EeecCccCCC-CCcEEEecCCCchhhh
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYT-VEELTEDSFD-GVDIALFSAGGSISKK 116 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~-v~~~d~~~~~-~~DvVf~a~g~~~s~~ 116 (279)
|+|-|+||+||+.|...|...+| ++..+ +|+.....-.+ +..+. ...++ +... ++|+|+--.|.....+
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh---~v~il-tR~~~~~~~~~-~~~v~~~~~~~-~~~~~~~DavINLAG~~I~~r 71 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGH---QVTIL-TRRPPKASQNL-HPNVTLWEGLA-DALTLGIDAVINLAGEPIAER 71 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCC---eEEEE-EcCCcchhhhc-Cccccccchhh-hcccCCCCEEEECCCCccccc
Confidence 57999999999999999988766 34445 44433221111 00111 11111 1122 6999998888665533
No 219
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=95.06 E-value=0.043 Score=57.01 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=55.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.||+||| .|.+|..+.+.|.+.+++ .++..+ +++..... ....+.... ...+ .+.+.++|+||+|++.....+.
T Consensus 4 ~~I~IIG-~G~mG~ala~~l~~~G~~-~~V~~~-d~~~~~~~~a~~~g~~~~-~~~~~~~~~~~aDvVilavp~~~~~~v 79 (735)
T PRK14806 4 GRVVVIG-LGLIGGSFAKALRERGLA-REVVAV-DRRAKSLELAVSLGVIDR-GEEDLAEAVSGADVIVLAVPVLAMEKV 79 (735)
T ss_pred cEEEEEe-eCHHHHHHHHHHHhcCCC-CEEEEE-ECChhHHHHHHHCCCCCc-ccCCHHHHhcCCCEEEECCCHHHHHHH
Confidence 5899999 799999999999887642 234333 33221100 000110000 0111 1224688999999998877776
Q ss_pred HHHHH---hCCCEEEEcCCC
Q 023678 118 GPIAV---EKGSIVVDNSSA 134 (279)
Q Consensus 118 ~~~~~---~aG~~VIDlS~~ 134 (279)
+..+. ..++.|+|.++.
T Consensus 80 l~~l~~~~~~~~ii~d~~sv 99 (735)
T PRK14806 80 LADLKPLLSEHAIVTDVGST 99 (735)
T ss_pred HHHHHHhcCCCcEEEEcCCC
Confidence 66554 467889998874
No 220
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.05 E-value=0.032 Score=54.57 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=54.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecC--ccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELT--EDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~~s 114 (279)
..||.|+|| |-+|+.+++.|.+++ ..++. +.+|. ..+ .+........+..++ .+.+..+|+||+|+++..-
T Consensus 181 ~kkvlviGa-G~~a~~va~~L~~~g--~~~I~-V~nRt-~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 181 SKNVLIIGA-GQTGELLFRHVTALA--PKQIM-LANRT-IEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcC--CCEEE-EECCC-HHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 468999995 999999999998874 33443 33443 222 221110011222222 2346789999999987533
Q ss_pred hhhHHHHHhCCCEEEEcCCCCCCCCC
Q 023678 115 KKFGPIAVEKGSIVVDNSSAFRMVEN 140 (279)
Q Consensus 115 ~~~~~~~~~aG~~VIDlS~~~R~~~~ 140 (279)
--...........+||++=+--.+++
T Consensus 256 vi~~~~~~~~~~~~iDLavPRdidp~ 281 (414)
T PRK13940 256 IVTCKYVGDKPRVFIDISIPQALDPK 281 (414)
T ss_pred eECHHHhCCCCeEEEEeCCCCCCCcc
Confidence 21122222334578999876433443
No 221
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.02 E-value=0.073 Score=49.54 Aligned_cols=93 Identities=16% Similarity=0.250 Sum_probs=61.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|++|.+|+-+..+|.+++ ..+....+ +. + ++ .+.+.++|+|+.|+|... -+
T Consensus 158 ~Gk~vvViG~gg~vGkpia~~L~~~g---atVtv~~~-~t--~------------~L-~~~~~~aDIvI~AtG~~~--~v 216 (283)
T PRK14192 158 AGKHAVVVGRSAILGKPMAMMLLNAN---ATVTICHS-RT--Q------------NL-PELVKQADIIVGAVGKPE--LI 216 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCC---CEEEEEeC-Cc--h------------hH-HHHhccCCEEEEccCCCC--cC
Confidence 35799999999999999999998763 25444432 11 1 01 123468999999997433 34
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-...++.|+.|||..-.. .++. ++-+++.+.+..
T Consensus 217 ~~~~lk~gavViDvg~n~-~~~~---~~GDvd~~~~~~ 250 (283)
T PRK14192 217 KKDWIKQGAVVVDAGFHP-RDGG---GVGDIELQGIEE 250 (283)
T ss_pred CHHHcCCCCEEEEEEEee-cCCC---CcccccHHHhhc
Confidence 456788999999986432 2221 355677666653
No 222
>PLN02700 homoserine dehydrogenase family protein
Probab=94.98 E-value=0.08 Score=51.23 Aligned_cols=28 Identities=14% Similarity=-0.025 Sum_probs=25.3
Q ss_pred CcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 102 VDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 102 ~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
.++++.|+++....++.++++++|+.||
T Consensus 110 ~~ViVD~T~s~~~~~~y~~aL~~G~hVV 137 (377)
T PLN02700 110 GLVVVDCSASMETIGALNEAVDLGCCIV 137 (377)
T ss_pred CCEEEECCCChHHHHHHHHHHHCCCeEE
Confidence 5999999998777789999999999998
No 223
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.98 E-value=0.18 Score=46.27 Aligned_cols=91 Identities=18% Similarity=0.230 Sum_probs=52.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec------CCCCceeeeCCceeEEe--ec-CccC-CCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK------RSAGKQLSFQDKAYTVE--EL-TEDS-FDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~------~s~G~~~~~~~~~~~v~--~~-d~~~-~~~~DvVf~a~ 109 (279)
|||+|+| .|.+|..+...|.+.+|. +..+... +..|..+.....+..+. .. +.++ ..++|++|.|+
T Consensus 1 mkI~IiG-~G~iG~~~a~~L~~~g~~---V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilav 76 (305)
T PRK12921 1 MRIAVVG-AGAVGGTFGGRLLEAGRD---VTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAV 76 (305)
T ss_pred CeEEEEC-CCHHHHHHHHHHHHCCCc---eEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEe
Confidence 5899999 699999999999987653 3334321 11122222111111111 01 1122 36789999999
Q ss_pred CCchhhhhHHHHHh---CCCEEEEcCCC
Q 023678 110 GGSISKKFGPIAVE---KGSIVVDNSSA 134 (279)
Q Consensus 110 g~~~s~~~~~~~~~---aG~~VIDlS~~ 134 (279)
++....+..+.+.. .+..||.+...
T Consensus 77 k~~~~~~~~~~l~~~~~~~~~ii~~~nG 104 (305)
T PRK12921 77 KAYQLDAAIPDLKPLVGEDTVIIPLQNG 104 (305)
T ss_pred cccCHHHHHHHHHhhcCCCCEEEEeeCC
Confidence 98877776665543 45666655443
No 224
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.97 E-value=0.028 Score=52.87 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=27.1
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++++||.|.|||||+|+.|++.|.++++ +++++
T Consensus 13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~---~V~~~ 45 (348)
T PRK15181 13 LAPKRWLITGVAGFIGSGLLEELLFLNQ---TVIGL 45 (348)
T ss_pred ccCCEEEEECCccHHHHHHHHHHHHCCC---EEEEE
Confidence 3456999999999999999999998753 55555
No 225
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=94.97 E-value=0.038 Score=53.65 Aligned_cols=74 Identities=20% Similarity=0.345 Sum_probs=45.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCc----eEEEEE-eec---CCCCceeeeCC------ceeEEeecCccCCCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPY----RSIKML-ASK---RSAGKQLSFQD------KAYTVEELTEDSFDGVD 103 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~----~~l~~l-~s~---~s~G~~~~~~~------~~~~v~~~d~~~~~~~D 103 (279)
+..||+|+||+|.||..++-.|...+.-. +.|+++ .+. ...|..+...+ ..+.+..-+.+++.++|
T Consensus 43 ~p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaD 122 (387)
T TIGR01757 43 KTVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDAD 122 (387)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCC
Confidence 36899999999999999999988775322 345444 121 11222211110 12333332346788999
Q ss_pred EEEecCCC
Q 023678 104 IALFSAGG 111 (279)
Q Consensus 104 vVf~a~g~ 111 (279)
+|+++.|.
T Consensus 123 IVVitAG~ 130 (387)
T TIGR01757 123 WALLIGAK 130 (387)
T ss_pred EEEECCCC
Confidence 99999875
No 226
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.89 E-value=0.07 Score=50.24 Aligned_cols=70 Identities=17% Similarity=0.275 Sum_probs=44.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeee------CCceeEEee-cCccCCCCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a~ 109 (279)
.+||+|+|| |.||..+.-.|...+ -..+++++...+. .|..... ... ..+.. -+.+++.++|+|+.+.
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~-~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~-~~v~~~~dy~~~~~adivvita 79 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKG-LADELVLVDVVEDKLKGEAMDLQHGSAFLKN-PKIEADKDYSVTANSKVVIVTA 79 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcC-CCCEEEEEeCCccHHHHHHHHHHHhhccCCC-CEEEECCCHHHhCCCCEEEECC
Confidence 479999996 999999999888773 2346776643322 2322111 111 13332 2345688999999987
Q ss_pred CC
Q 023678 110 GG 111 (279)
Q Consensus 110 g~ 111 (279)
|.
T Consensus 80 G~ 81 (312)
T cd05293 80 GA 81 (312)
T ss_pred CC
Confidence 75
No 227
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.89 E-value=0.049 Score=47.67 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=26.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++|.|.||+|.+|+.+++.|.++++ +++.+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~g~---~V~~~~ 37 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAADGA---EVIVVD 37 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHCCC---EEEEEe
Confidence 46899999999999999999998754 555553
No 228
>PRK08618 ornithine cyclodeaminase; Validated
Probab=94.84 E-value=0.057 Score=50.92 Aligned_cols=92 Identities=14% Similarity=0.154 Sum_probs=55.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee--C-CceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF--Q-DKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~--~-~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
..+++|+| +|..|+..++.+... ..++.+.+.+|.... ..+.. . ...+.+...+ .+.+.++|+|+.|+++.
T Consensus 127 ~~~v~iiG-aG~~a~~~~~al~~~--~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~ 203 (325)
T PRK08618 127 AKTLCLIG-TGGQAKGQLEAVLAV--RDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK 203 (325)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHhc--CCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC
Confidence 46899999 799999888877543 334445555553211 11110 0 0012222222 22357899999999987
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCC
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
...+. ..++.|+.|+-..++.
T Consensus 204 -~p~i~-~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 204 -TPVFS-EKLKKGVHINAVGSFM 224 (325)
T ss_pred -CcchH-HhcCCCcEEEecCCCC
Confidence 34455 7789999998776653
No 229
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=94.81 E-value=0.032 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.488 Sum_probs=21.5
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFP 65 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p 65 (279)
|.|+|||||+|+.|++.|.++++.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~ 24 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHE 24 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTE
T ss_pred EEEEccCCHHHHHHHHHHHHcCCc
Confidence 689999999999999999998553
No 230
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.76 E-value=0.037 Score=48.98 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=27.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++.+++.|.||+|.+|+.+++.|.++++ +++.+.
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~---~V~~~~ 42 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGA---RVHVCD 42 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCC---EEEEEe
Confidence 3457999999999999999999998854 444443
No 231
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.64 E-value=0.12 Score=40.50 Aligned_cols=80 Identities=18% Similarity=0.281 Sum_probs=50.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecCccCCCCCcEEEecCCCc-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTEDSFDGVDIALFSAGGS-ISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d~~~~~~~DvVf~a~g~~-~s~ 115 (279)
..+|.|+| .|-+|..=++.|.+.+ .++.+++ ++. .... ..+... ++. .++.++|+||.|++.. ..+
T Consensus 7 ~~~vlVvG-gG~va~~k~~~Ll~~g---A~v~vis-~~~--~~~~---~~i~~~~~~~~-~~l~~~~lV~~at~d~~~n~ 75 (103)
T PF13241_consen 7 GKRVLVVG-GGPVAARKARLLLEAG---AKVTVIS-PEI--EFSE---GLIQLIRREFE-EDLDGADLVFAATDDPELNE 75 (103)
T ss_dssp T-EEEEEE-ESHHHHHHHHHHCCCT---BEEEEEE-SSE--HHHH---TSCEEEESS-G-GGCTTESEEEE-SS-HHHHH
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEEC-Cch--hhhh---hHHHHHhhhHH-HHHhhheEEEecCCCHHHHH
Confidence 57999999 5999999999998863 5666664 332 1000 112222 222 5678899999999764 556
Q ss_pred hhHHHHHhCCCEEE
Q 023678 116 KFGPIAVEKGSIVV 129 (279)
Q Consensus 116 ~~~~~~~~aG~~VI 129 (279)
++...+.+.|..|=
T Consensus 76 ~i~~~a~~~~i~vn 89 (103)
T PF13241_consen 76 AIYADARARGILVN 89 (103)
T ss_dssp HHHHHHHHTTSEEE
T ss_pred HHHHHHhhCCEEEE
Confidence 66666777888763
No 232
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=94.60 E-value=0.063 Score=47.47 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=23.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
+.+++.|.||||.+|+.+++.|.++++
T Consensus 6 ~~~~vlItGasg~iG~~la~~l~~~G~ 32 (262)
T PRK13394 6 NGKTAVVTGAASGIGKEIALELARAGA 32 (262)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC
Confidence 356899999999999999999998854
No 233
>PRK06141 ornithine cyclodeaminase; Validated
Probab=94.59 E-value=0.071 Score=50.04 Aligned_cols=89 Identities=17% Similarity=0.207 Sum_probs=52.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHc-CCCCceEEEEEeecCCCCceeee--C----CceeEEeecCc-cCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSF--Q----DKAYTVEELTE-DSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~-~~~p~~~l~~l~s~~s~G~~~~~--~----~~~~~v~~~d~-~~~~~~DvVf~a~g 110 (279)
..+|+|+| +|..|+..++.+.. + +..++.+. +|. ..+...+ . +....+.+ +. +...++|+|++|++
T Consensus 125 ~~~v~iiG-~G~~a~~~~~al~~~~--~~~~V~V~-~Rs-~~~a~~~a~~~~~~g~~~~~~~-~~~~av~~aDIVi~aT~ 198 (314)
T PRK06141 125 ASRLLVVG-TGRLASLLALAHASVR--PIKQVRVW-GRD-PAKAEALAAELRAQGFDAEVVT-DLEAAVRQADIISCATL 198 (314)
T ss_pred CceEEEEC-CcHHHHHHHHHHHhcC--CCCEEEEE-cCC-HHHHHHHHHHHHhcCCceEEeC-CHHHHHhcCCEEEEeeC
Confidence 47899999 79999999986554 4 55555544 432 2221111 0 11122211 12 23568999999998
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
.... -+-...++.|. +||..+.+
T Consensus 199 s~~p-vl~~~~l~~g~-~i~~ig~~ 221 (314)
T PRK06141 199 STEP-LVRGEWLKPGT-HLDLVGNF 221 (314)
T ss_pred CCCC-EecHHHcCCCC-EEEeeCCC
Confidence 7621 12235567888 67777754
No 234
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=94.53 E-value=0.16 Score=50.06 Aligned_cols=89 Identities=22% Similarity=0.264 Sum_probs=60.3
Q ss_pred CCEEEEECcC---cHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCC-CCCcEEEecCCCchh
Q 023678 39 APSVAVVGVT---GAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGAT---G~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s 114 (279)
..+|+||||| |-.|..+++.|.+++|.. ++..+.-+. ..+ .+ +.+.. +.+++ ..+|+++.|++....
T Consensus 7 p~siavvGaS~~~~~~g~~~~~~l~~~gf~g-~v~~Vnp~~---~~i--~G--~~~~~-sl~~lp~~~Dlavi~vp~~~~ 77 (447)
T TIGR02717 7 PKSVAVIGASRDPGKVGYAIMKNLIEGGYKG-KIYPVNPKA---GEI--LG--VKAYP-SVLEIPDPVDLAVIVVPAKYV 77 (447)
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHhCCCCC-cEEEECCCC---Ccc--CC--ccccC-CHHHCCCCCCEEEEecCHHHH
Confidence 4679999998 678999999999887643 555553221 111 11 11111 11112 368999999999999
Q ss_pred hhhHHHHHhCCCE-EEEcCCCCC
Q 023678 115 KKFGPIAVEKGSI-VVDNSSAFR 136 (279)
Q Consensus 115 ~~~~~~~~~aG~~-VIDlS~~~R 136 (279)
.+.+.++.++|++ +|=+|+-|.
T Consensus 78 ~~~l~e~~~~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 78 PQVVEECGEKGVKGAVVITAGFK 100 (447)
T ss_pred HHHHHHHHhcCCCEEEEECCCcc
Confidence 9999999999985 334677774
No 235
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=94.52 E-value=0.032 Score=53.01 Aligned_cols=91 Identities=16% Similarity=0.162 Sum_probs=60.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee---CCceeEEeecC-----ccCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---QDKAYTVEELT-----EDSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~---~~~~~~v~~~d-----~~~~~~~DvVf~a~g 110 (279)
...+.|.|||||+|+-+.+.|..+++.- ++++|+ .++.-.. -+.+..+.++. .+..+.++||+.|.|
T Consensus 6 e~d~iiYGAtGy~G~lvae~l~~~g~~~----aLAgRs-~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvG 80 (382)
T COG3268 6 EYDIIIYGATGYAGGLVAEYLAREGLTA----ALAGRS-SAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVG 80 (382)
T ss_pred ceeEEEEccccchhHHHHHHHHHcCCch----hhccCC-HHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEeccc
Confidence 4679999999999999999999885432 565543 3321110 12222222221 123468999999999
Q ss_pred Cc--hhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GS--ISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~--~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.. ....++...+.+|.--.|+++.
T Consensus 81 Pyt~~g~plv~aC~~~GTdY~DiTGE 106 (382)
T COG3268 81 PYTRYGEPLVAACAAAGTDYADITGE 106 (382)
T ss_pred cccccccHHHHHHHHhCCCeeecccc
Confidence 75 3466777778899999999985
No 236
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.51 E-value=0.067 Score=49.23 Aligned_cols=89 Identities=15% Similarity=0.277 Sum_probs=52.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--CCc-eeEEeecC-ccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QDK-AYTVEELT-EDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--~~~-~~~v~~~d-~~~~~~~DvVf~a~g~~~ 113 (279)
..+|.|+|+ |-+|+.+++.|...+ ..++.++ +|+.. .+.+.. ... .+.+ +.+ .+.+.++|+|+.|++.+.
T Consensus 123 ~k~vlVlGa-Gg~a~ai~~aL~~~g--~~~V~v~-~R~~~~a~~l~~~~~~~~~~~~-~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 123 GKRILILGA-GGAARAVILPLLDLG--VAEITIV-NRTVERAEELAKLFGALGKAEL-DLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHcC--CCEEEEE-eCCHHHHHHHHHHhhhccceee-cccchhccccCCEEEECCcCCC
Confidence 458999995 999999999998773 3454444 44321 111111 100 1222 222 134567999999999876
Q ss_pred hh-----hhHHHHHhCCCEEEEcC
Q 023678 114 SK-----KFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 114 s~-----~~~~~~~~aG~~VIDlS 132 (279)
.. .+....+..+..|+|+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEee
Confidence 42 22234456677788873
No 237
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.51 E-value=0.079 Score=49.44 Aligned_cols=69 Identities=16% Similarity=0.318 Sum_probs=41.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee--e------CCceeEEeecCccCCCCCcEEEecCCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--F------QDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~--~------~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
||+|+|+ |.+|+.+...|...+. ..+++++......-+... . ......+...+.+++.++|+|+.|+|.
T Consensus 2 kI~IIGa-G~vG~~~a~~l~~~g~-~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 2 KVVIIGA-GHVGSSFAYSLVNQGI-ADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred EEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 8999995 9999999999988732 135666632222111111 0 011222332233457899999999986
No 238
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=94.50 E-value=0.15 Score=48.62 Aligned_cols=104 Identities=16% Similarity=0.301 Sum_probs=64.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcC--CCCceE--EE-EEeecCCCC--ceeee----CCcee-----------EEeecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDR--DFPYRS--IK-MLASKRSAG--KQLSF----QDKAY-----------TVEELT 95 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~--~~p~~~--l~-~l~s~~s~G--~~~~~----~~~~~-----------~v~~~d 95 (279)
+..||+|+| +|..|+.+.+.+.+. .||.++ +. .....+-.| +.+.. .+.+. .+...|
T Consensus 20 ~~~kV~ivG-sGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~d 98 (372)
T KOG2711|consen 20 DPLKVCIVG-SGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPD 98 (372)
T ss_pred CceEEEEEc-cChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecch
Confidence 358999999 799999999998643 233332 11 122223334 22221 11111 111122
Q ss_pred -ccCCCCCcEEEecCCCchhhhhHHHH---HhCCCEEEEcCCCCCCCCCCc
Q 023678 96 -EDSFDGVDIALFSAGGSISKKFGPIA---VEKGSIVVDNSSAFRMVENVP 142 (279)
Q Consensus 96 -~~~~~~~DvVf~a~g~~~s~~~~~~~---~~aG~~VIDlS~~~R~~~~vp 142 (279)
.+...++|++++++||.....+.+++ .+.++..|+++--|-..++.|
T Consensus 99 l~ea~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~ 149 (372)
T KOG2711|consen 99 LVEAAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEVGEEGP 149 (372)
T ss_pred HHHHhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceeccCCCC
Confidence 22346899999999999988888777 468888999988876654443
No 239
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.46 E-value=0.1 Score=48.87 Aligned_cols=71 Identities=23% Similarity=0.356 Sum_probs=42.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceeeeCC-----ceeEEeecCccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLSFQD-----KAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~~~~-----~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
|||+|||+ |+||..+...|..+++ ..++.++..... .|......+ ....+..-+.+++.++|+||+|.+..
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~-~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGL-ASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 58999996 9999999999988742 245555532211 121111100 11222222345678999999998863
No 240
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.45 E-value=0.092 Score=42.77 Aligned_cols=91 Identities=20% Similarity=0.273 Sum_probs=53.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee----cCCC-----------Cceeee----------CCceeEEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSA-----------GKQLSF----------QDKAYTVEE 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s----~~s~-----------G~~~~~----------~~~~~~v~~ 93 (279)
..||+|+| .|-+|.++++.|...|. -++.++-. .... |+.-.. +..++...+
T Consensus 2 ~~~v~iiG-~G~vGs~va~~L~~~Gv--~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~ 78 (135)
T PF00899_consen 2 NKRVLIIG-AGGVGSEVAKNLARSGV--GKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIP 78 (135)
T ss_dssp T-EEEEES-TSHHHHHHHHHHHHHTT--SEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEE
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHhCC--CceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeee
Confidence 36899999 59999999999988754 34444421 1111 221100 112222222
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHH-HHHhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~-~~~~aG~~VIDlS 132 (279)
++. +.++++|+||+|++...++.+.. .+.+.|.++|+.+
T Consensus 79 ~~~~~~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~ 124 (135)
T PF00899_consen 79 EKIDEENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAG 124 (135)
T ss_dssp SHCSHHHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEE
T ss_pred cccccccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 211 12358999999999876665554 4567899998754
No 241
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=94.42 E-value=0.21 Score=43.63 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=24.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKM 71 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~ 71 (279)
|+|.|.||+|.+|+++.+.|.+++ +...+..
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~-~~~~v~~ 31 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERY-PDATVHA 31 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhC-CCCEEEE
Confidence 489999999999999999998864 2344433
No 242
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=94.40 E-value=0.097 Score=43.25 Aligned_cols=36 Identities=22% Similarity=0.429 Sum_probs=30.2
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA 78 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~ 78 (279)
|+|+|+||-||++-++.+.++. +.++++.++..++.
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~-d~f~v~~Lsa~~n~ 36 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHP-DKFEVVALSAGSNI 36 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCT-TTEEEEEEEESSTH
T ss_pred CEEEcCCcHHHHHHHHHHHhCC-CceEEEEEEcCCCH
Confidence 6899999999999999999882 36899998765543
No 243
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=94.38 E-value=0.15 Score=44.66 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec---------------CCCCceeee--------CCceeEEe--e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLSF--------QDKAYTVE--E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~---------------~s~G~~~~~--------~~~~~~v~--~ 93 (279)
..||.|+|+.| +|.++++.|...|.- ++..+... +..|++-.. ...++.+. .
T Consensus 21 ~s~VlIiG~gg-lG~evak~La~~GVg--~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~ 97 (197)
T cd01492 21 SARILLIGLKG-LGAEIAKNLVLSGIG--SLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDT 97 (197)
T ss_pred hCcEEEEcCCH-HHHHHHHHHHHcCCC--EEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEe
Confidence 36899999755 999999999987543 33334211 122321110 01122222 1
Q ss_pred --cC---ccCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEc
Q 023678 94 --LT---EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDN 131 (279)
Q Consensus 94 --~d---~~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDl 131 (279)
++ .+.+.++|+|++|++...++..+.++ .+.|.++|..
T Consensus 98 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~ 141 (197)
T cd01492 98 DDISEKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYAT 141 (197)
T ss_pred cCccccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 11 12257899999998876665555544 5677777643
No 244
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=94.37 E-value=0.077 Score=52.04 Aligned_cols=91 Identities=14% Similarity=0.228 Sum_probs=52.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCce-eeeCC-c------eeEEeecCccCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQ-LSFQD-K------AYTVEELTEDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~~-~~~~~-~------~~~v~~~d~~~~~~~Dv 104 (279)
.|||+||| .||+|.-+...|.+ + ++++.+...+. .|.. +...+ . .+.+.. +.+.+.++|+
T Consensus 6 ~mkI~vIG-lGyvGlpmA~~la~-~---~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~-~~~~~~~adv 79 (425)
T PRK15182 6 EVKIAIIG-LGYVGLPLAVEFGK-S---RQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTS-EIEKIKECNF 79 (425)
T ss_pred CCeEEEEC-cCcchHHHHHHHhc-C---CEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEe-CHHHHcCCCE
Confidence 47999999 89999999999876 3 35555532111 1211 00000 0 011211 1223578999
Q ss_pred EEecCCCchhh------hhH-------HHHHhCCCEEEEcCCCC
Q 023678 105 ALFSAGGSISK------KFG-------PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 105 Vf~a~g~~~s~------~~~-------~~~~~aG~~VIDlS~~~ 135 (279)
+|.|+|+.... +++ ...+..|..|||-|.-.
T Consensus 80 vii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~ 123 (425)
T PRK15182 80 YIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY 123 (425)
T ss_pred EEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence 99999976211 111 22345788999877643
No 245
>PRK08605 D-lactate dehydrogenase; Validated
Probab=94.34 E-value=0.072 Score=50.49 Aligned_cols=87 Identities=16% Similarity=0.295 Sum_probs=51.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|.. +| ..++... +++ ...... . ..... ++ .+.+.++|+|++|+|.....+.
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~-~~-g~~V~~~-d~~-~~~~~~-~--~~~~~~~l-~ell~~aDvIvl~lP~t~~t~~ 216 (332)
T PRK08605 146 DLKVAVIG-TGRIGLAVAKIFAK-GY-GSDVVAY-DPF-PNAKAA-T--YVDYKDTI-EEAVEGADIVTLHMPATKYNHY 216 (332)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHh-cC-CCEEEEE-CCC-ccHhHH-h--hccccCCH-HHHHHhCCEEEEeCCCCcchhh
Confidence 47999999 79999999999843 22 2344433 322 111110 0 01111 11 1235789999999987654333
Q ss_pred H-----HHHHhCCCEEEEcCCC
Q 023678 118 G-----PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 118 ~-----~~~~~aG~~VIDlS~~ 134 (279)
. -...+.|+.+|+.|-.
T Consensus 217 li~~~~l~~mk~gailIN~sRG 238 (332)
T PRK08605 217 LFNADLFKHFKKGAVFVNCARG 238 (332)
T ss_pred hcCHHHHhcCCCCcEEEECCCC
Confidence 3 2234678899987754
No 246
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=94.29 E-value=0.049 Score=50.84 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=54.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee---eCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS---FQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~---~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
+||++|| .|..|.-+.+.|.+.+| ++.... | ...+... ..+ ........+...++|+||.|++.+...+
T Consensus 1 ~kIafIG-LG~MG~pmA~~L~~aG~---~v~v~~-r-~~~ka~~~~~~~G--a~~a~s~~eaa~~aDvVitmv~~~~~V~ 72 (286)
T COG2084 1 MKIAFIG-LGIMGSPMAANLLKAGH---EVTVYN-R-TPEKAAELLAAAG--ATVAASPAEAAAEADVVITMLPDDAAVR 72 (286)
T ss_pred CeEEEEc-CchhhHHHHHHHHHCCC---EEEEEe-C-ChhhhhHHHHHcC--CcccCCHHHHHHhCCEEEEecCCHHHHH
Confidence 4899999 99999999999999865 343342 2 2222111 111 1111111233468999999999876644
Q ss_pred hHHH----H---HhCCCEEEEcCCCC
Q 023678 117 FGPI----A---VEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~~----~---~~aG~~VIDlS~~~ 135 (279)
-+-. . ++.|..|||.|..-
T Consensus 73 ~V~~g~~g~~~~~~~G~i~IDmSTis 98 (286)
T COG2084 73 AVLFGENGLLEGLKPGAIVIDMSTIS 98 (286)
T ss_pred HHHhCccchhhcCCCCCEEEECCCCC
Confidence 3321 2 34699999999863
No 247
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.24 E-value=0.24 Score=44.81 Aligned_cols=30 Identities=13% Similarity=0.287 Sum_probs=24.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~---~Vi~~ 34 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGW---RVFAT 34 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999988753 55444
No 248
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.22 E-value=0.11 Score=50.44 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=49.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC------CCCcee-eeCC-------ceeEEe-ecCc-cCCCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR------SAGKQL-SFQD-------KAYTVE-ELTE-DSFDGVD 103 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~------s~G~~~-~~~~-------~~~~v~-~~d~-~~~~~~D 103 (279)
|||+|+| .||+|.-+...++. +|+ ++.+.... ..|... ...+ ....+. ..+. +...++|
T Consensus 1 mkI~VIG-lGyvGl~~A~~lA~-G~~---VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad 75 (388)
T PRK15057 1 MKITISG-TGYVGLSNGLLIAQ-NHE---VVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDAD 75 (388)
T ss_pred CEEEEEC-CCHHHHHHHHHHHh-CCc---EEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCC
Confidence 4899999 79999999987774 553 44442111 111110 0000 011222 2222 2346899
Q ss_pred EEEecCCCchhh-------hhHHH----H--HhCCCEEEEcCCCC
Q 023678 104 IALFSAGGSISK-------KFGPI----A--VEKGSIVVDNSSAF 135 (279)
Q Consensus 104 vVf~a~g~~~s~-------~~~~~----~--~~aG~~VIDlS~~~ 135 (279)
++|.|+|..... .++.. + +..|..||+-|.-.
T Consensus 76 ~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~ 120 (388)
T PRK15057 76 YVIIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVP 120 (388)
T ss_pred EEEEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecC
Confidence 999999976221 11111 1 25688899877643
No 249
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=94.20 E-value=0.11 Score=49.26 Aligned_cols=71 Identities=20% Similarity=0.300 Sum_probs=41.9
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCC----CceEEEEEeecCCC----CceeeeCCce------eEEeecCccCCCCCcEEE
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDF----PYRSIKMLASKRSA----GKQLSFQDKA------YTVEELTEDSFDGVDIAL 106 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~----p~~~l~~l~s~~s~----G~~~~~~~~~------~~v~~~d~~~~~~~DvVf 106 (279)
||+|+||+|.||..+...|..++. ...+++++...... |......+.. +....-+.+++.++|+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 699999999999999999987643 22257777432222 2221111110 111111135678899999
Q ss_pred ecCCC
Q 023678 107 FSAGG 111 (279)
Q Consensus 107 ~a~g~ 111 (279)
.+.|.
T Consensus 81 itAG~ 85 (324)
T TIGR01758 81 LVGAF 85 (324)
T ss_pred EcCCC
Confidence 98875
No 250
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=94.20 E-value=0.45 Score=45.33 Aligned_cols=91 Identities=13% Similarity=0.200 Sum_probs=53.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.++|+||| .|.+|+.+.+.|...++ +++....+.+...... ..+ ..+.+. .+....+|+||+|++.......
T Consensus 17 gktIgIIG-~GsmG~AlA~~L~~sG~---~Vvv~~r~~~~s~~~A~~~G--~~~~s~-~eaa~~ADVVvLaVPd~~~~~V 89 (330)
T PRK05479 17 GKKVAIIG-YGSQGHAHALNLRDSGV---DVVVGLREGSKSWKKAEADG--FEVLTV-AEAAKWADVIMILLPDEVQAEV 89 (330)
T ss_pred CCEEEEEe-eHHHHHHHHHHHHHCCC---EEEEEECCchhhHHHHHHCC--CeeCCH-HHHHhcCCEEEEcCCHHHHHHH
Confidence 36899999 79999999999988754 4443322212111111 111 112111 2335678999999998877766
Q ss_pred H-HHHH---hCCCEEEEcCCCCCC
Q 023678 118 G-PIAV---EKGSIVVDNSSAFRM 137 (279)
Q Consensus 118 ~-~~~~---~aG~~VIDlS~~~R~ 137 (279)
+ +.+. +.|..| ..++-|..
T Consensus 90 ~~~~I~~~Lk~g~iL-~~a~G~~i 112 (330)
T PRK05479 90 YEEEIEPNLKEGAAL-AFAHGFNI 112 (330)
T ss_pred HHHHHHhcCCCCCEE-EECCCCCh
Confidence 6 4343 347666 45555543
No 251
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.17 E-value=0.087 Score=48.48 Aligned_cols=92 Identities=12% Similarity=0.163 Sum_probs=52.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee-------eCC---------------ceeEEeecCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-------FQD---------------KAYTVEELTE 96 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~-------~~~---------------~~~~v~~~d~ 96 (279)
.||+||| .|.+|..+...|.+++|+ +..+ .++... .... ..+ ..+.+.. +.
T Consensus 2 ~~V~VIG-~G~mG~~iA~~la~~G~~---V~~~-d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~-~~ 75 (288)
T PRK09260 2 EKLVVVG-AGVMGRGIAYVFAVSGFQ---TTLV-DIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSL-DL 75 (288)
T ss_pred cEEEEEC-ccHHHHHHHHHHHhCCCc---EEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC-cH
Confidence 4799999 599999999999887654 3333 222100 0000 000 0012221 22
Q ss_pred -cCCCCCcEEEecCCCchhh--hhH---HHHHhCCCEEEEcCCCCCC
Q 023678 97 -DSFDGVDIALFSAGGSISK--KFG---PIAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 97 -~~~~~~DvVf~a~g~~~s~--~~~---~~~~~aG~~VIDlS~~~R~ 137 (279)
+.+.++|+||.|++..... .+. .+....++.+..++|.+..
T Consensus 76 ~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~ 122 (288)
T PRK09260 76 KAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP 122 (288)
T ss_pred HHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 3467899999999987542 222 2334567766556666543
No 252
>PTZ00117 malate dehydrogenase; Provisional
Probab=94.14 E-value=0.11 Score=49.07 Aligned_cols=71 Identities=13% Similarity=0.337 Sum_probs=44.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceeee------CCceeEEee-cCccCCCCCcEEEec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLSF------QDKAYTVEE-LTEDSFDGVDIALFS 108 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a 108 (279)
+.+||+|+|| |.+|..+...|..+++ .+++++.-.. ..|..+.. .+....+.. -+.+++.++|+|+.+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~--~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~~l~~ADiVVit 80 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNL--GDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYEDIKDSDVVVIT 80 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCC--CeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHHHhCCCCEEEEC
Confidence 3579999997 9999999998888753 4565553222 12322211 111223332 233467899999999
Q ss_pred CCC
Q 023678 109 AGG 111 (279)
Q Consensus 109 ~g~ 111 (279)
.+.
T Consensus 81 ag~ 83 (319)
T PTZ00117 81 AGV 83 (319)
T ss_pred CCC
Confidence 854
No 253
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=94.11 E-value=0.1 Score=47.68 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=51.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--CC-ceeEEeecCccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--QD-KAYTVEELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--~~-~~~~v~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
..++.|+|+ |-+|+.++..|.+.+ .++..+ +|+.. .+.+.. .. ........+.....++|+|+.|+|.+..
T Consensus 117 ~k~vliiGa-Gg~g~aia~~L~~~g---~~v~v~-~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~ 191 (270)
T TIGR00507 117 NQRVLIIGA-GGAARAVALPLLKAD---CNVIIA-NRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMS 191 (270)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCC---CEEEEE-eCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCC
Confidence 358999996 899999999998763 254444 33211 111110 00 0112222222233578999999997643
Q ss_pred hh-----hHHHHHhCCCEEEEcCC
Q 023678 115 KK-----FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 115 ~~-----~~~~~~~aG~~VIDlS~ 133 (279)
.. +....+..|..|+|++-
T Consensus 192 ~~~~~~~~~~~~l~~~~~v~D~~y 215 (270)
T TIGR00507 192 GNIDEPPVPAEKLKEGMVVYDMVY 215 (270)
T ss_pred CCCCCCCCCHHHcCCCCEEEEecc
Confidence 21 22344567888888854
No 254
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.11 E-value=0.44 Score=44.56 Aligned_cols=106 Identities=22% Similarity=0.281 Sum_probs=65.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|.|... -+-
T Consensus 155 Gk~vvViGrS~iVGkPla~lL~~~---~aTVtichs~T---~------------~l-~~~~~~ADIvIsAvGkp~--~i~ 213 (287)
T PRK14173 155 GKEVVVVGRSNIVGKPLAALLLRE---DATVTLAHSKT---Q------------DL-PAVTRRADVLVVAVGRPH--LIT 213 (287)
T ss_pred CCEEEEECCCCccHHHHHHHHHHC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEecCCcC--ccC
Confidence 579999999999999999999875 23433333221 0 00 122467899999998653 234
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCce-eeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPL-VIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vpl-vvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
+...+.|+.|||.+-.+-.+++..+ .+-.|+ +..... ...+.-.||=
T Consensus 214 ~~~vk~GavVIDVGin~~~~~~gk~~l~GDVd-~~v~~~-----a~~iTPVPGG 261 (287)
T PRK14173 214 PEMVRPGAVVVDVGINRVGGNGGRDILTGDVH-PEVAEV-----AGALTPVPGG 261 (287)
T ss_pred HHHcCCCCEEEEccCccccCCCCceeeecccc-HhHHhh-----CcEEecCCCC
Confidence 5667899999998766421112121 455566 334321 2445555654
No 255
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.11 E-value=0.18 Score=49.07 Aligned_cols=108 Identities=20% Similarity=0.264 Sum_probs=64.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc------eeeeCCceeEEeecCccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK------QLSFQDKAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~------~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
+.++|.|+|+.+ +|..+.+.|.++|+ ++..+ +++.... .+...+..+...+...+...+.|+||.+++.
T Consensus 4 ~~k~v~iiG~g~-~G~~~A~~l~~~G~---~V~~~-d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 4 KGKKVLVVGAGV-SGLALAKFLKKLGA---KVILT-DEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred CCCEEEEECCCH-HHHHHHHHHHHCCC---EEEEE-eCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 357899999766 99999999998864 44433 3322110 0100111111112112234578999999998
Q ss_pred chhhhhHHHHHhCCCEEEEcCC-CCCCCCCCceeeccCCH
Q 023678 112 SISKKFGPIAVEKGSIVVDNSS-AFRMVENVPLVIPEVNP 150 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~-~~R~~~~vplvvPevN~ 150 (279)
....+.+..+.+.|+.|+.-.. .+|....-..+|-+=|+
T Consensus 79 ~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~G 118 (450)
T PRK14106 79 PLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNG 118 (450)
T ss_pred CCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCc
Confidence 7778888888999998875433 23322222345666664
No 256
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.04 E-value=0.059 Score=52.62 Aligned_cols=30 Identities=37% Similarity=0.670 Sum_probs=26.1
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCC
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFP 65 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p 65 (279)
++++..|.|+||||.+|+.+++.|.+++|.
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~ 105 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFS 105 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCe
Confidence 344689999999999999999999999753
No 257
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.04 E-value=0.13 Score=47.48 Aligned_cols=93 Identities=17% Similarity=0.292 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cc---e-------ee---eCCc-----------eeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---Q-------LS---FQDK-----------AYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~---~-------~~---~~~~-----------~~~v~ 92 (279)
..||+|+| .|+.|..+...|..+++ ++.++ .++.. .+ . +. ..+. .+...
T Consensus 3 i~~I~ViG-aG~mG~~iA~~la~~G~---~V~l~-d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~ 77 (291)
T PRK06035 3 IKVIGVVG-SGVMGQGIAQVFARTGY---DVTIV-DVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS 77 (291)
T ss_pred CcEEEEEC-ccHHHHHHHHHHHhcCC---eEEEE-eCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee
Confidence 45899999 59999999999998865 34444 22211 00 0 00 0000 01111
Q ss_pred ecCccCCCCCcEEEecCCCchh--hhhHHHH---HhCCCEEEEcCCCCCC
Q 023678 93 ELTEDSFDGVDIALFSAGGSIS--KKFGPIA---VEKGSIVVDNSSAFRM 137 (279)
Q Consensus 93 ~~d~~~~~~~DvVf~a~g~~~s--~~~~~~~---~~aG~~VIDlS~~~R~ 137 (279)
.+.+.+.++|+||.|++.... +++..++ ...++.++.+++....
T Consensus 78 -~~~~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~ 126 (291)
T PRK06035 78 -TSYESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMI 126 (291)
T ss_pred -CCHHHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCH
Confidence 122345789999999988752 3443333 3557888888887654
No 258
>PLN02572 UDP-sulfoquinovose synthase
Probab=93.98 E-value=0.084 Score=51.84 Aligned_cols=58 Identities=28% Similarity=0.378 Sum_probs=39.3
Q ss_pred hhhhccCCCCCCCCCcceeeeec------ccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 11 THFISKLPANKPRTKPMFTRVRM------SYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..|-|.-|+....| |..|++.- +..-++++|.|.||||++|+.|++.|.++|+ +++++
T Consensus 14 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~---~V~~~ 77 (442)
T PLN02572 14 KAFTSASPASAQST-PAVTELATPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGY---EVAIV 77 (442)
T ss_pred hhhccCCccccccc-cceecccCCCCCCCCccccCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEE
Confidence 45777777765444 44444321 1233467899999999999999999998754 45554
No 259
>PRK08267 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.12 Score=45.95 Aligned_cols=30 Identities=10% Similarity=0.326 Sum_probs=24.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++.|.||||.+|+.+.+.|.++++ ++..+
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~---~V~~~ 31 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW---RVGAY 31 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC---eEEEE
Confidence 5799999999999999999998753 45555
No 260
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.90 E-value=0.16 Score=44.17 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=23.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.++|.|.||||.+|+++++.|.++++
T Consensus 5 ~~~vlItG~sg~iG~~l~~~l~~~G~ 30 (248)
T PRK05557 5 GKVALVTGASRGIGRAIAERLAAQGA 30 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
No 261
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.87 E-value=0.26 Score=43.28 Aligned_cols=91 Identities=10% Similarity=0.130 Sum_probs=52.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec----CC-------------CCceeee--------CCceeEEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RS-------------AGKQLSF--------QDKAYTVEE 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~----~s-------------~G~~~~~--------~~~~~~v~~ 93 (279)
..||.|+|+.| +|.++++.|...|.. ++..+... +. .|++-.. ....+.+..
T Consensus 19 ~s~VlviG~gg-lGsevak~L~~~GVg--~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~ 95 (198)
T cd01485 19 SAKVLIIGAGA-LGAEIAKNLVLAGID--SITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSI 95 (198)
T ss_pred hCcEEEECCCH-HHHHHHHHHHHcCCC--EEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEE
Confidence 36899999766 999999999987544 33333211 11 2221110 011222221
Q ss_pred ----cC------ccCCCCCcEEEecCCCchhhhhHH-HHHhCCCEEEEcC
Q 023678 94 ----LT------EDSFDGVDIALFSAGGSISKKFGP-IAVEKGSIVVDNS 132 (279)
Q Consensus 94 ----~d------~~~~~~~DvVf~a~g~~~s~~~~~-~~~~aG~~VIDlS 132 (279)
+. .+.+.++|+|+.|.....++.+.. ...+.+.++|..+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 96 VEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred EecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 11 112578999999988765555544 4467788887654
No 262
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.86 E-value=0.1 Score=49.42 Aligned_cols=93 Identities=14% Similarity=0.178 Sum_probs=55.6
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--------CCceeee-C-Cc----eeEEeecCc-cCCC
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--------AGKQLSF-Q-DK----AYTVEELTE-DSFD 100 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--------~G~~~~~-~-~~----~~~v~~~d~-~~~~ 100 (279)
...++||+|+| +|..|..+...|.+++ + ++.+. ++. .+....+ . +. .+.+.. |. +.+.
T Consensus 4 ~~~~mkI~IiG-aGa~G~alA~~La~~g-~---v~l~~-~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~-d~~~a~~ 76 (341)
T PRK12439 4 AKREPKVVVLG-GGSWGTTVASICARRG-P---TLQWV-RSAETADDINDNHRNSRYLGNDVVLSDTLRATT-DFAEAAN 76 (341)
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCC-C---EEEEe-CCHHHHHHHHhcCCCcccCCCCcccCCCeEEEC-CHHHHHh
Confidence 34568999999 6999999999999874 2 22232 221 1111111 1 11 111211 21 2356
Q ss_pred CCcEEEecCCCchhhhhHHHHH---hCCCEEEEcCCCC
Q 023678 101 GVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAF 135 (279)
Q Consensus 101 ~~DvVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~ 135 (279)
++|+||+|+++...++.++++. ..+..||.++.-+
T Consensus 77 ~aDlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi 114 (341)
T PRK12439 77 CADVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGL 114 (341)
T ss_pred cCCEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 8899999999888777776654 3455677665544
No 263
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.85 E-value=0.32 Score=46.49 Aligned_cols=94 Identities=17% Similarity=0.284 Sum_probs=57.3
Q ss_pred EEEEECcCcHHHHHHHHHHHcCC------CCceEEEEEeecCC-C-Cceee------------eCCc----eeEEeecCc
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRS-A-GKQLS------------FQDK----AYTVEELTE 96 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~------~p~~~l~~l~s~~s-~-G~~~~------------~~~~----~~~v~~~d~ 96 (279)
||+|+| +|..|..|...|.+.+ |. .++.+. .++. . +..+. .++. ++.... |.
T Consensus 1 kI~VIG-aG~wGtALA~~la~ng~~~~~~~~-~~V~lw-~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~-dl 76 (342)
T TIGR03376 1 RVAVVG-SGNWGTAIAKIVAENARALPELFE-ESVRMW-VFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP-DL 76 (342)
T ss_pred CEEEEC-cCHHHHHHHHHHHHcCCcccccCC-ceEEEE-EeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC-CH
Confidence 689999 6999999999998754 10 233333 3311 0 11110 0111 122211 22
Q ss_pred -cCCCCCcEEEecCCCchhhhhHHHHH---hCCCEEEEcCCCCCCC
Q 023678 97 -DSFDGVDIALFSAGGSISKKFGPIAV---EKGSIVVDNSSAFRMV 138 (279)
Q Consensus 97 -~~~~~~DvVf~a~g~~~s~~~~~~~~---~aG~~VIDlS~~~R~~ 138 (279)
+...++|++|+|+|+..-++.+.++. ..+..+|.++--+-.+
T Consensus 77 ~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~ 122 (342)
T TIGR03376 77 VEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVS 122 (342)
T ss_pred HHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccC
Confidence 23578999999999988877777653 4577888888877544
No 264
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=93.83 E-value=0.12 Score=50.70 Aligned_cols=91 Identities=18% Similarity=0.293 Sum_probs=54.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCCceeEEeecC--ccCCCCCcEEEecCCCc---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELT--EDSFDGVDIALFSAGGS--- 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~~~~~v~~~d--~~~~~~~DvVf~a~g~~--- 112 (279)
..+|.|||| |-.|+-+.+.|.++ ...++. ++.|.. ..+.+.... ...+..++ ...+..+|+||+|+++.
T Consensus 178 ~~~vlvIGA-Gem~~lva~~L~~~--g~~~i~-IaNRT~erA~~La~~~-~~~~~~l~el~~~l~~~DvVissTsa~~~i 252 (414)
T COG0373 178 DKKVLVIGA-GEMGELVAKHLAEK--GVKKIT-IANRTLERAEELAKKL-GAEAVALEELLEALAEADVVISSTSAPHPI 252 (414)
T ss_pred cCeEEEEcc-cHHHHHHHHHHHhC--CCCEEE-EEcCCHHHHHHHHHHh-CCeeecHHHHHHhhhhCCEEEEecCCCccc
Confidence 568999995 99999999999988 344443 444321 111111100 12222222 23457899999998765
Q ss_pred hhhhhHHHHHhC--CCEEEEcCCC
Q 023678 113 ISKKFGPIAVEK--GSIVVDNSSA 134 (279)
Q Consensus 113 ~s~~~~~~~~~a--G~~VIDlS~~ 134 (279)
+.++.++.+.+. +..+||++-+
T Consensus 253 i~~~~ve~a~~~r~~~livDiavP 276 (414)
T COG0373 253 ITREMVERALKIRKRLLIVDIAVP 276 (414)
T ss_pred cCHHHHHHHHhcccCeEEEEecCC
Confidence 345555555432 2468999876
No 265
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=93.73 E-value=0.15 Score=50.46 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=45.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-C----C-ceEEEEEeecCC--CCceeeeC------CceeEEeecCccCCCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-F----P-YRSIKMLASKRS--AGKQLSFQ------DKAYTVEELTEDSFDGV 102 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-~----p-~~~l~~l~s~~s--~G~~~~~~------~~~~~v~~~d~~~~~~~ 102 (279)
.+..||+|+||+|.||..++-.|...+ | + ..+++.+.-... .|..+... ..++.+..-+.+++.++
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kda 177 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDA 177 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcC
Confidence 346899999999999999999887651 0 1 125555532211 12222111 11233333234678999
Q ss_pred cEEEecCCC
Q 023678 103 DIALFSAGG 111 (279)
Q Consensus 103 DvVf~a~g~ 111 (279)
|+|+.+.|.
T Consensus 178 DiVVitAG~ 186 (444)
T PLN00112 178 EWALLIGAK 186 (444)
T ss_pred CEEEECCCC
Confidence 999999886
No 266
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.73 E-value=0.18 Score=46.53 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=53.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce------------eeeCC-----------ceeEEeecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ------------LSFQD-----------KAYTVEELT 95 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~------------~~~~~-----------~~~~v~~~d 95 (279)
..||+||| .|..|..+.+.|..+++ ++.++. ++..... +...+ ..+.+.+ +
T Consensus 4 ~~~V~vIG-~G~mG~~iA~~l~~~G~---~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~ 77 (295)
T PLN02545 4 IKKVGVVG-AGQMGSGIAQLAAAAGM---DVWLLD-SDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT-N 77 (295)
T ss_pred cCEEEEEC-CCHHHHHHHHHHHhcCC---eEEEEe-CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC-C
Confidence 36899999 69999999999998764 444442 2211000 00000 0112221 2
Q ss_pred ccCCCCCcEEEecCCCchh--hhhHHH---HHhCCCEEEEcCCCCCC
Q 023678 96 EDSFDGVDIALFSAGGSIS--KKFGPI---AVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 96 ~~~~~~~DvVf~a~g~~~s--~~~~~~---~~~aG~~VIDlS~~~R~ 137 (279)
.+.++++|+||.|++.+.. ..+..+ .+..++.++.+++....
T Consensus 78 ~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~ 124 (295)
T PLN02545 78 LEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISI 124 (295)
T ss_pred HHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 2346789999999984433 333332 34567777767776644
No 267
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.70 E-value=0.14 Score=48.12 Aligned_cols=69 Identities=20% Similarity=0.364 Sum_probs=43.3
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--CCCceee------eCC-ceeEEeecCccCCCCCcEEEecCCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--SAGKQLS------FQD-KAYTVEELTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--s~G~~~~------~~~-~~~~v~~~d~~~~~~~DvVf~a~g~ 111 (279)
||+|||| |.||..+.-.|..++. .-+++++...+ ..|..+. +.. ....+..-+.+++.++|+|+.+.|.
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~-~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG~ 78 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGL-FSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAGP 78 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCC-CCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCCC
Confidence 6999997 9999999888877632 23677764322 1232211 111 1234443234678899999999875
No 268
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.67 E-value=0.14 Score=45.36 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=25.9
Q ss_pred cccCCCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 33 ~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|++.++.+++.|.||+|.+|+++.+.|.++++
T Consensus 1 m~~~l~~k~~lItGas~gIG~~~a~~l~~~G~ 32 (255)
T PRK06463 1 YSMRFKGKVALITGGTRGIGRAIAEAFLREGA 32 (255)
T ss_pred CCCCcCCCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 33334457899999999999999999998754
No 269
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.66 E-value=0.073 Score=51.70 Aligned_cols=27 Identities=26% Similarity=0.303 Sum_probs=23.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCce
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYR 67 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~ 67 (279)
|||+|+| |||||-..--.|++.||..+
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv 27 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVV 27 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEE
Confidence 6899999 99999999999999887543
No 270
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.66 E-value=0.22 Score=45.86 Aligned_cols=94 Identities=14% Similarity=0.240 Sum_probs=55.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceee----------eCC-----------ceeEEeec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLS----------FQD-----------KAYTVEEL 94 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~----------~~~-----------~~~~v~~~ 94 (279)
+..||+||| .|..|..+...|..++| ++.++ .++.. .+... ..+ ..+.+.+
T Consensus 3 ~~~kI~vIG-aG~mG~~iA~~la~~G~---~V~l~-d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~- 76 (292)
T PRK07530 3 AIKKVGVIG-AGQMGNGIAHVCALAGY---DVLLN-DVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTAT- 76 (292)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCC---eEEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC-
Confidence 346899999 59999999999998765 34444 33211 00000 001 0122221
Q ss_pred CccCCCCCcEEEecCCCchh--hhhHH---HHHhCCCEEEEcCCCCCC
Q 023678 95 TEDSFDGVDIALFSAGGSIS--KKFGP---IAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 95 d~~~~~~~DvVf~a~g~~~s--~~~~~---~~~~aG~~VIDlS~~~R~ 137 (279)
+.+.+.++|+||.|++.... +.+.. ..+..++.++.+++....
T Consensus 77 ~~~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~ 124 (292)
T PRK07530 77 DLEDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI 124 (292)
T ss_pred CHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH
Confidence 22346789999999987532 23332 334567788877777653
No 271
>PRK08264 short chain dehydrogenase; Validated
Probab=93.65 E-value=0.21 Score=43.63 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=23.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..+|.|.||||.+|+++.+.|.++++
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~G~ 31 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLARGA 31 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCc
Confidence 46899999999999999999998854
No 272
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.65 E-value=0.21 Score=46.36 Aligned_cols=90 Identities=11% Similarity=0.287 Sum_probs=50.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee------eC-----C------ceeEEeecCc-cCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS------FQ-----D------KAYTVEELTE-DSFD 100 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~------~~-----~------~~~~v~~~d~-~~~~ 100 (279)
.||+||| .|.+|..+...|...+| ++..+. ++... .... .. . ..+.+. .+. +.+.
T Consensus 5 ~~I~vIG-aG~mG~~iA~~l~~~g~---~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~ 78 (311)
T PRK06130 5 QNLAIIG-AGTMGSGIAALFARKGL---QVVLID-VMEGALERARGVIERALGVYAPLGIASAGMGRIRME-AGLAAAVS 78 (311)
T ss_pred cEEEEEC-CCHHHHHHHHHHHhCCC---eEEEEE-CCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEe-CCHHHHhc
Confidence 6899999 59999999999988765 444442 21100 0000 00 0 001121 122 2357
Q ss_pred CCcEEEecCCCch--hhhhHHHH---HhCCCEEEEcCCCC
Q 023678 101 GVDIALFSAGGSI--SKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 101 ~~DvVf~a~g~~~--s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
++|+||.|++... ..++...+ ...++.|+.+++..
T Consensus 79 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~ 118 (311)
T PRK06130 79 GADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGL 118 (311)
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCC
Confidence 8999999998764 33444333 34455565555543
No 273
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.65 E-value=0.035 Score=47.67 Aligned_cols=87 Identities=11% Similarity=0.172 Sum_probs=47.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~ 117 (279)
..+|+|+| .|.+|+++.++|..- ..++.++. +...... .+........+++ +.+..+|+|+.++|-+. ++.+
T Consensus 36 g~tvgIiG-~G~IG~~vA~~l~~f---G~~V~~~d-~~~~~~~-~~~~~~~~~~~l~-ell~~aDiv~~~~plt~~T~~l 108 (178)
T PF02826_consen 36 GKTVGIIG-YGRIGRAVARRLKAF---GMRVIGYD-RSPKPEE-GADEFGVEYVSLD-ELLAQADIVSLHLPLTPETRGL 108 (178)
T ss_dssp TSEEEEES-TSHHHHHHHHHHHHT---T-EEEEEE-SSCHHHH-HHHHTTEEESSHH-HHHHH-SEEEE-SSSSTTTTTS
T ss_pred CCEEEEEE-EcCCcCeEeeeeecC---CceeEEec-ccCChhh-hcccccceeeehh-hhcchhhhhhhhhcccccccee
Confidence 47999999 799999999999864 33655553 3221111 0100112222222 23467999999998432 2222
Q ss_pred H--H--HHHhCCCEEEEcC
Q 023678 118 G--P--IAVEKGSIVVDNS 132 (279)
Q Consensus 118 ~--~--~~~~aG~~VIDlS 132 (279)
. + ...+.|+.+|..+
T Consensus 109 i~~~~l~~mk~ga~lvN~a 127 (178)
T PF02826_consen 109 INAEFLAKMKPGAVLVNVA 127 (178)
T ss_dssp BSHHHHHTSTTTEEEEESS
T ss_pred eeeeeeeccccceEEEecc
Confidence 1 1 2245788888654
No 274
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=93.62 E-value=0.25 Score=44.71 Aligned_cols=106 Identities=16% Similarity=0.240 Sum_probs=61.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE--eecC-----------CCCceeee--------CCceeEEe----ecC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML--ASKR-----------SAGKQLSF--------QDKAYTVE----ELT 95 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l--~s~~-----------s~G~~~~~--------~~~~~~v~----~~d 95 (279)
||.|+| .|-+|.++++.|...|+..+.++=. .+.+ ..|+.-.. ...++.+. .++
T Consensus 1 kVlvvG-~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~ 79 (234)
T cd01484 1 KVLLVG-AGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG 79 (234)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589999 5899999999998886544433211 1111 22321110 01112221 121
Q ss_pred ------ccCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcCCCCCCCCCCceeeccC
Q 023678 96 ------EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVENVPLVIPEV 148 (279)
Q Consensus 96 ------~~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS~~~R~~~~vplvvPev 148 (279)
.+.+++.|+||.|++.-.++.++.++ .+.+..+||.+. .-+.-.+..++|+.
T Consensus 80 ~~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~-~G~~G~v~vi~p~~ 138 (234)
T cd01484 80 PEQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGT-EGFKGNAQVILPGM 138 (234)
T ss_pred hhhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcc-cCCceEEEEEcCCC
Confidence 11247899999999999888877655 678999998543 33333344455543
No 275
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=93.61 E-value=0.14 Score=48.34 Aligned_cols=106 Identities=12% Similarity=0.150 Sum_probs=60.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeee----CCceeEEeecCccCCCCCcEEEecCCCc
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSF----QDKAYTVEELTEDSFDGVDIALFSAGGS 112 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~----~~~~~~v~~~d~~~~~~~DvVf~a~g~~ 112 (279)
+..+++|+| +|..|+..++.|... ..++-+.+.+++.... .+.. .+..+.+.+-..+...++|+|+.|++..
T Consensus 127 ~~~~lgiiG-~G~qA~~~l~al~~~--~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~ 203 (325)
T TIGR02371 127 DSSVLGIIG-AGRQAWTQLEALSRV--FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR 203 (325)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhc--CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC
Confidence 357899999 799999888887654 3344455555432211 1100 1111222211123457899999999875
Q ss_pred hhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 113 ISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
. .-+....++.|+.|.-.+++.. ...|+.++.+.
T Consensus 204 ~-P~~~~~~l~~g~~v~~vGs~~p-------~~~Eld~~~l~ 237 (325)
T TIGR02371 204 K-PVVKADWVSEGTHINAIGADAP-------GKQELDPEILK 237 (325)
T ss_pred C-cEecHHHcCCCCEEEecCCCCc-------ccccCCHHHHh
Confidence 3 1223455689999876665431 13455555554
No 276
>PRK12939 short chain dehydrogenase; Provisional
Probab=93.59 E-value=0.16 Score=44.36 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.+++.|.||+|.+|+.+++.|.++++ +++.+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~---~v~~~ 37 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGA---TVAFN 37 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCC---EEEEE
Confidence 347899999999999999999998754 45555
No 277
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.55 E-value=0.49 Score=44.10 Aligned_cols=92 Identities=22% Similarity=0.376 Sum_probs=60.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.+++ ..+....|+. + ++ .+....+|+|+.|.|...- +-
T Consensus 156 Gk~vvViGrS~iVGkPla~lL~~~~---atVtichs~T---~------------~l-~~~~~~ADIvI~AvG~p~~--i~ 214 (282)
T PRK14169 156 GKRVVIVGRSNIVGRPLAGLMVNHD---ATVTIAHSKT---R------------NL-KQLTKEADILVVAVGVPHF--IG 214 (282)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC---CEEEEECCCC---C------------CH-HHHHhhCCEEEEccCCcCc--cC
Confidence 5799999999999999999998762 3333332211 0 00 1123678999999986532 44
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ ..++ -++-.|+.+...
T Consensus 215 ~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~ 247 (282)
T PRK14169 215 ADAVKPGAVVIDVGISR-GADG--KLLGDVDEAAVA 247 (282)
T ss_pred HHHcCCCcEEEEeeccc-cCCC--CeeecCcHHHHH
Confidence 55678999999987665 2222 255667766655
No 278
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.54 E-value=1 Score=41.86 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=21.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++|+|+| .|++|..+...|.+++|
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~ 26 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGH 26 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCC
Confidence 5899999 79999999999998866
No 279
>PLN02240 UDP-glucose 4-epimerase
Probab=93.54 E-value=0.093 Score=48.80 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||++|+.|++.|.++++ +++.+
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~g~---~V~~~ 35 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLAGY---KVVVI 35 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 56899999999999999999998754 45555
No 280
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.49 E-value=0.58 Score=35.17 Aligned_cols=63 Identities=22% Similarity=0.473 Sum_probs=41.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhh-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISK-KF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~-~~ 117 (279)
..+++|+|+ |.+|+-+.+.|.+.+ ..++ .+.++ |++|.|++...-- +.
T Consensus 23 ~~~v~i~G~-G~~g~~~a~~l~~~~--~~~v-~v~~r---------------------------di~i~~~~~~~~~~~~ 71 (86)
T cd05191 23 GKTVVVLGA-GEVGKGIAKLLADEG--GKKV-VLCDR---------------------------DILVTATPAGVPVLEE 71 (86)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcC--CCEE-EEEcC---------------------------CEEEEcCCCCCCchHH
Confidence 468999996 999999999998763 1222 22222 9999998765332 21
Q ss_pred HHHHHhCCCEEEEcC
Q 023678 118 GPIAVEKGSIVVDNS 132 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS 132 (279)
.-.....+..|||++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 113345678888864
No 281
>PRK06179 short chain dehydrogenase; Provisional
Probab=93.46 E-value=0.33 Score=43.31 Aligned_cols=31 Identities=13% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||||.+|+++.+.|.++++ +++++
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~---~V~~~ 34 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY---RVFGT 34 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 35799999999999999999998754 44444
No 282
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=93.42 E-value=0.36 Score=42.42 Aligned_cols=91 Identities=16% Similarity=0.231 Sum_probs=56.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec---------------CCCCceee--------eCCceeEEe---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLS--------FQDKAYTVE--- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~---------------~s~G~~~~--------~~~~~~~v~--- 92 (279)
..||.|+| .|-+|.++++.|...|.. ++.++... +..|+.-. .....+.+.
T Consensus 21 ~~~VlviG-~GglGs~ia~~La~~Gv~--~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~ 97 (202)
T TIGR02356 21 NSHVLIIG-AGGLGSPAALYLAGAGVG--TIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK 97 (202)
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHcCCC--eEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence 46899999 599999999999988543 33333211 11222111 001122222
Q ss_pred -ecCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 93 -ELTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 93 -~~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
.++. +.+.++|+||.|++...++.+..++ .+.|+++|+.+
T Consensus 98 ~~i~~~~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 98 ERVTAENLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred hcCCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 1221 1257899999999988777766554 67888888755
No 283
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.40 E-value=0.15 Score=44.54 Aligned_cols=31 Identities=13% Similarity=0.348 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.|++|.+|..+++.|.++++ +++++
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~G~---~Vi~~ 37 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKEGV---NVGLL 37 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46799999999999999999988753 55554
No 284
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=93.31 E-value=0.15 Score=46.23 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=21.7
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
||.|+||||++|+.+++.|.++++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~ 24 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH 24 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC
Confidence 588999999999999999998754
No 285
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.25 E-value=0.57 Score=46.80 Aligned_cols=91 Identities=12% Similarity=0.202 Sum_probs=51.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeee-----------------CCc-eeEEeecCc-cCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSF-----------------QDK-AYTVEELTE-DSF 99 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~-----------------~~~-~~~v~~~d~-~~~ 99 (279)
+||+||| +|.+|..+...|..+|| ++.+. .++... ..+.. ... .+.+.+ +. +.+
T Consensus 5 ~kIavIG-~G~MG~~iA~~la~~G~---~V~v~-D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~-~~~ea~ 78 (495)
T PRK07531 5 MKAACIG-GGVIGGGWAARFLLAGI---DVAVF-DPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCA-SLAEAV 78 (495)
T ss_pred CEEEEEC-cCHHHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeC-CHHHHh
Confidence 5899999 79999999999998876 34444 222110 00000 000 122221 22 346
Q ss_pred CCCcEEEecCCCchh--hhhHH---HHHhCCCEEEEcCCCCC
Q 023678 100 DGVDIALFSAGGSIS--KKFGP---IAVEKGSIVVDNSSAFR 136 (279)
Q Consensus 100 ~~~DvVf~a~g~~~s--~~~~~---~~~~aG~~VIDlS~~~R 136 (279)
.++|+||.|++.... +++.. .++..++.+..+++.+.
T Consensus 79 ~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~ 120 (495)
T PRK07531 79 AGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFL 120 (495)
T ss_pred cCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Confidence 789999999998853 22222 33445665555555543
No 286
>PLN00198 anthocyanidin reductase; Provisional
Probab=93.21 E-value=0.12 Score=48.19 Aligned_cols=27 Identities=19% Similarity=0.436 Sum_probs=24.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++++|.|.||+|++|+.|++.|.++++
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~g~ 34 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQKGY 34 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHCCC
Confidence 357899999999999999999998754
No 287
>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=93.19 E-value=0.22 Score=47.93 Aligned_cols=34 Identities=26% Similarity=0.405 Sum_probs=28.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++.++.|+|++|++|+.|++.|.+++ +..++..+
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~-~~~~irv~ 36 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENE-LKLEIRVV 36 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcc-cccEEEEe
Confidence 45799999999999999999999884 35666655
No 288
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=93.18 E-value=0.26 Score=48.74 Aligned_cols=108 Identities=16% Similarity=0.236 Sum_probs=69.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceee---eCCceeEEeecCccCCCCCcEEEecCCCchh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLS---FQDKAYTVEELTEDSFDGVDIALFSAGGSIS 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~---~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s 114 (279)
.+||+|+| -|-.|+.+.+.|.+++ .++.+.-.+... +.... ..+.++.....+.+++..+|+|+..-|-...
T Consensus 7 ~~kv~V~G-LG~sG~a~a~~L~~~G---~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~ 82 (448)
T COG0771 7 GKKVLVLG-LGKSGLAAARFLLKLG---AEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPT 82 (448)
T ss_pred CCEEEEEe-cccccHHHHHHHHHCC---CeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCC
Confidence 57999999 7999999999999875 344444322222 11000 1111222222223557789999999888888
Q ss_pred hhhHHHHHhCCCEEE-EcCCCCCCCCCCc-eeeccCCH
Q 023678 115 KKFGPIAVEKGSIVV-DNSSAFRMVENVP-LVIPEVNP 150 (279)
Q Consensus 115 ~~~~~~~~~aG~~VI-DlS~~~R~~~~vp-lvvPevN~ 150 (279)
..++.++.++|+.|+ |+.=.+|.....| +.+-+=|.
T Consensus 83 ~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNG 120 (448)
T COG0771 83 HPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNG 120 (448)
T ss_pred CHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCc
Confidence 889999999999988 6666666542333 33555554
No 289
>PLN02650 dihydroflavonol-4-reductase
Probab=93.13 E-value=0.12 Score=48.34 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||++|+.|++.|.++++ +++++
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~---~V~~~ 35 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY---TVRAT 35 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
No 290
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.04 E-value=0.11 Score=52.10 Aligned_cols=153 Identities=12% Similarity=0.160 Sum_probs=81.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeC----Cc-eeEEeecCcc----CCCCCcEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQ----DK-AYTVEELTED----SFDGVDIALF 107 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~----~~-~~~v~~~d~~----~~~~~DvVf~ 107 (279)
+.+|++|| .|..|+.+.+.|.+++| ++.+. .| +..+ .+... +. .+...+ +++ .+..+|+||+
T Consensus 6 ~~~IG~IG-LG~MG~~mA~nL~~~G~---~V~V~-NR-t~~k~~~l~~~~~~~Ga~~~~~a~-s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAG-LAVMGQNLALNIAEKGF---PISVY-NR-TTSKVDETVERAKKEGNLPLYGFK-DPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEe-eHHHHHHHHHHHHhCCC---eEEEE-CC-CHHHHHHHHHhhhhcCCcccccCC-CHHHHHhcCCCCCEEEE
Confidence 56899999 99999999999999866 44444 22 2221 11110 11 111111 122 2345999999
Q ss_pred cCCCchhhhhH-H---HHHhCCCEEEEcCCCCCCC----------CCCceeeccCCHH-hhhccccCCCCCcEEECCCCh
Q 023678 108 SAGGSISKKFG-P---IAVEKGSIVVDNSSAFRMV----------ENVPLVIPEVNPE-AMSGIKVGMGKGALIANPNCS 172 (279)
Q Consensus 108 a~g~~~s~~~~-~---~~~~aG~~VIDlS~~~R~~----------~~vplvvPevN~~-~i~~~~~~~~~~~iVanPgC~ 172 (279)
|++.+...+-+ . ..++.|-.|||.|...--+ .++.|+=-.|..- .-.. ....| .+|+.
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~------~G~~i-m~GG~ 151 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGAR------NGPSL-MPGGS 151 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhc------CCCeE-EecCC
Confidence 99988653332 2 3346799999999875211 1223333333321 1111 22323 55555
Q ss_pred HHHHHHhhhchhhhcCcc--EEEEEEeecccccChh
Q 023678 173 TIICLMAATPLHRRAKVT--RMVVSTYQAASGAGAA 206 (279)
Q Consensus 173 tt~l~laL~PL~~~~~i~--~v~vtt~q~vSGaG~~ 206 (279)
.-+ .-.++|+++...-+ .--...|-|-.|+|..
T Consensus 152 ~~a-~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~ 186 (493)
T PLN02350 152 FEA-YKNIEDILEKVAAQVDDGPCVTYIGPGGAGNF 186 (493)
T ss_pred HHH-HHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHH
Confidence 554 34567777765421 0012345666777744
No 291
>PRK06046 alanine dehydrogenase; Validated
Probab=93.02 E-value=0.17 Score=47.80 Aligned_cols=91 Identities=14% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-eeee--C---CceeEEeecCc-cCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QLSF--Q---DKAYTVEELTE-DSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~~~--~---~~~~~v~~~d~-~~~~~~DvVf~a~g 110 (279)
+..+++|+| +|..|+..++.|... +.++.+.+.+++.... .... . +..+.+.+ +. +.+. +|+|+.|+|
T Consensus 128 ~~~~vgiiG-~G~qa~~h~~al~~~--~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~l~-aDiVv~aTp 202 (326)
T PRK06046 128 DSKVVGIIG-AGNQARTQLLALSEV--FDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAE-DIEEACD-CDILVTTTP 202 (326)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhh--CCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeC-CHHHHhh-CCEEEEecC
Confidence 357899999 799999999988765 6677777766653211 1110 0 11122221 21 2234 899999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
+.. .-+-...++.|+.|.-.+++
T Consensus 203 s~~-P~~~~~~l~~g~hV~~iGs~ 225 (326)
T PRK06046 203 SRK-PVVKAEWIKEGTHINAIGAD 225 (326)
T ss_pred CCC-cEecHHHcCCCCEEEecCCC
Confidence 753 22334456899998766654
No 292
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.00 E-value=0.74 Score=39.53 Aligned_cols=88 Identities=16% Similarity=0.229 Sum_probs=52.4
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec----CC----------CCceeee--------CCceeEEe----ec
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK----RS----------AGKQLSF--------QDKAYTVE----EL 94 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~----~s----------~G~~~~~--------~~~~~~v~----~~ 94 (279)
||+|+|+ |-+|.++++.|...+...+. ++-.. .. .|+.-.. ....+.+. .+
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~--lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~ 77 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLK--LVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKI 77 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEE--EEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeec
Confidence 5899995 99999999999988654333 33111 11 2221110 01112221 22
Q ss_pred Cc----cCCCCCcEEEecCCCchhhh-hHHHHHhC-CCEEEEc
Q 023678 95 TE----DSFDGVDIALFSAGGSISKK-FGPIAVEK-GSIVVDN 131 (279)
Q Consensus 95 d~----~~~~~~DvVf~a~g~~~s~~-~~~~~~~a-G~~VIDl 131 (279)
+. +.+.++|+||.|++...++. +...+.+. |..+|-.
T Consensus 78 ~~~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 78 DENNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred ChhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 22 23578999999998888876 44556666 8887744
No 293
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=92.93 E-value=0.1 Score=48.30 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=24.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|||.|.||||++|+.|++.|.++++ +++.+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~---~V~~~ 30 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGH---DVVIL 30 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCC---eEEEE
Confidence 5899999999999999999988754 44444
No 294
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=92.91 E-value=0.32 Score=45.75 Aligned_cols=85 Identities=6% Similarity=0.115 Sum_probs=50.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeec-C-ccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEEL-T-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~-d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
..+|+|+| .|.+|+++.+.|..-| .++..+. +.... . .+.. .+... + .+.+.++|+|++++|.+.+.+
T Consensus 136 g~tvgIvG-~G~IG~~vA~~l~afG---~~V~~~~-~~~~~--~--~~~~-~~~~~~~l~e~l~~aDvvv~~lPlt~~T~ 205 (312)
T PRK15469 136 DFTIGILG-AGVLGSKVAQSLQTWG---FPLRCWS-RSRKS--W--PGVQ-SFAGREELSAFLSQTRVLINLLPNTPETV 205 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHCC---CEEEEEe-CCCCC--C--CCce-eecccccHHHHHhcCCEEEECCCCCHHHH
Confidence 46999999 8999999999998653 3555443 22110 0 0101 11111 1 133578999999999765432
Q ss_pred -hHH----HHHhCCCEEEEcCC
Q 023678 117 -FGP----IAVEKGSIVVDNSS 133 (279)
Q Consensus 117 -~~~----~~~~aG~~VIDlS~ 133 (279)
+.. ...+.|+.+|+.+-
T Consensus 206 ~li~~~~l~~mk~ga~lIN~aR 227 (312)
T PRK15469 206 GIINQQLLEQLPDGAYLLNLAR 227 (312)
T ss_pred HHhHHHHHhcCCCCcEEEECCC
Confidence 221 12357888887653
No 295
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.89 E-value=0.31 Score=47.31 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCccC-CCCCcEEEecCCCchh
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTEDS-FDGVDIALFSAGGSIS 114 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~~~-~~~~DvVf~a~g~~~s 114 (279)
|+..+|.|+| -|.+|..+.+.|.+.++ ++... +++... ....... + .... ..+. ..++|++|.+.|....
T Consensus 1 ~~~~~i~iiG-lG~~G~slA~~l~~~G~---~V~g~-D~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~dlvV~s~gi~~~ 72 (418)
T PRK00683 1 MGLQRVVVLG-LGVTGKSIARFLAQKGV---YVIGV-DKSLEALQSCPYIH-E-RYLE-NAEEFPEQVDLVVRSPGIKKE 72 (418)
T ss_pred CCCCeEEEEE-ECHHHHHHHHHHHHCCC---EEEEE-eCCccccchhHHHh-h-hhcC-CcHHHhcCCCEEEECCCCCCC
Confidence 3456899999 69999999999988753 33333 222111 0000000 0 0001 1122 3578999999887777
Q ss_pred hhhHHHHHhCCCEEEE
Q 023678 115 KKFGPIAVEKGSIVVD 130 (279)
Q Consensus 115 ~~~~~~~~~aG~~VID 130 (279)
..++.+++++|+.|+.
T Consensus 73 ~~~l~~A~~~g~~vv~ 88 (418)
T PRK00683 73 HPWVQAAIASHIPVVT 88 (418)
T ss_pred cHHHHHHHHCCCcEEE
Confidence 8899999999998884
No 296
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.80 E-value=0.64 Score=43.46 Aligned_cols=97 Identities=19% Similarity=0.331 Sum_probs=61.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC--ceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP--YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p--~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
..+|.|+|.+..||+=|..+|.+++ + ...+....|+. + ++ .+....+|+|+.|+|... -
T Consensus 153 Gk~vvViGrS~iVGkPla~lL~~~~-~~~~AtVtvchs~T---~------------~l-~~~~~~ADIvV~AvG~p~--~ 213 (287)
T PRK14181 153 GRHVAIVGRSNIVGKPLAALLMQKH-PDTNATVTLLHSQS---E------------NL-TEILKTADIIIAAIGVPL--F 213 (287)
T ss_pred CCEEEEECCCccchHHHHHHHHhCc-CCCCCEEEEeCCCC---C------------CH-HHHHhhCCEEEEccCCcC--c
Confidence 5799999999999999999998651 2 23332222210 0 00 122467999999998652 3
Q ss_pred hHHHHHhCCCEEEEcCCCCCCCCC--CceeeccCCHHhhh
Q 023678 117 FGPIAVEKGSIVVDNSSAFRMVEN--VPLVIPEVNPEAMS 154 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~R~~~~--vplvvPevN~~~i~ 154 (279)
+-....+.|+.|||.+-.+-.++. ..-.+-.|+.+...
T Consensus 214 i~~~~ik~GavVIDvGin~~~~~~~~g~kl~GDVd~e~~~ 253 (287)
T PRK14181 214 IKEEMIAEKAVIVDVGTSRVPAANPKGYILVGDVDFNNVV 253 (287)
T ss_pred cCHHHcCCCCEEEEecccccccccCCCCeeEeccchHHHH
Confidence 445667899999998766521211 11356667766655
No 297
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=92.79 E-value=0.17 Score=49.11 Aligned_cols=37 Identities=22% Similarity=0.489 Sum_probs=31.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSA 78 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~ 78 (279)
+||+|+|+||-||.+-++.+.++ |+ ++++.++..+..
T Consensus 2 k~i~IlGsTGSIG~qtL~Vi~~~--~~~f~v~~Laa~~n~ 39 (389)
T TIGR00243 2 KQIVILGSTGSIGKSTLDVVRHN--PDHFQVVALSAGKNV 39 (389)
T ss_pred ceEEEEecChHHHHHHHHHHHhC--ccccEEEEEEcCCCH
Confidence 58999999999999999998876 54 899988765543
No 298
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=92.78 E-value=0.24 Score=43.34 Aligned_cols=31 Identities=13% Similarity=0.279 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~g~---~v~~~ 33 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEEGA---KVAVF 33 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC---EEEEe
Confidence 46899999999999999999998753 44444
No 299
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.77 E-value=0.6 Score=42.25 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=55.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee---------------cCCCCceeee--------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS---------------KRSAGKQLSF--------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s---------------~~s~G~~~~~--------~~~~~~v~~-- 93 (279)
..||.|+| .|-+|.++++.|...|.. ++.++.. ....|++-.. ....+.+..
T Consensus 24 ~~~VlvvG-~GglGs~va~~La~~Gvg--~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~ 100 (240)
T TIGR02355 24 ASRVLIVG-LGGLGCAASQYLAAAGVG--NLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN 100 (240)
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHcCCC--EEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 46899999 589999999999887543 3333311 1122321110 011222222
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
++. +.+.++|+||.|++...++.+..++ .+.|+++|..+
T Consensus 101 ~~i~~~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 101 AKLDDAELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred ccCCHHHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 221 1256899999999998887766544 67899888643
No 300
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=92.69 E-value=0.62 Score=41.97 Aligned_cols=97 Identities=10% Similarity=0.145 Sum_probs=58.7
Q ss_pred CCCcceeeeecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-e-CCceeEEe--ecCccC
Q 023678 23 RTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-F-QDKAYTVE--ELTEDS 98 (279)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~-~~~~~~v~--~~d~~~ 98 (279)
+.|||+-.+..+ ..+|.||| .|-|+..=++.|.+.+ .++.+++ ..-. ..+. . ....+.+. ++++.+
T Consensus 13 ~~~~~pi~l~~~----~~~VLVVG-GG~VA~RK~~~Ll~~g---A~VtVVa-p~i~-~el~~l~~~~~i~~~~r~~~~~d 82 (223)
T PRK05562 13 ENKYMFISLLSN----KIKVLIIG-GGKAAFIKGKTFLKKG---CYVYILS-KKFS-KEFLDLKKYGNLKLIKGNYDKEF 82 (223)
T ss_pred cCCEeeeEEECC----CCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEEc-CCCC-HHHHHHHhCCCEEEEeCCCChHH
Confidence 467777777733 45999999 5999988777777653 4455553 3211 1110 0 01123332 344566
Q ss_pred CCCCcEEEecCCCc-hhhhhHHHHHhCCCEEE
Q 023678 99 FDGVDIALFSAGGS-ISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 99 ~~~~DvVf~a~g~~-~s~~~~~~~~~aG~~VI 129 (279)
+.++++||.|++.. +.+++...+.+.|..|.
T Consensus 83 l~g~~LViaATdD~~vN~~I~~~a~~~~~lvn 114 (223)
T PRK05562 83 IKDKHLIVIATDDEKLNNKIRKHCDRLYKLYI 114 (223)
T ss_pred hCCCcEEEECCCCHHHHHHHHHHHHHcCCeEE
Confidence 78999999999875 44555555556677654
No 301
>PRK06523 short chain dehydrogenase; Provisional
Probab=92.69 E-value=0.18 Score=44.79 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.++|.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 8 ~~k~vlItGas~gIG~~ia~~l~~~G~---~v~~~ 39 (260)
T PRK06523 8 AGKRALVTGGTKGIGAATVARLLEAGA---RVVTT 39 (260)
T ss_pred CCCEEEEECCCCchhHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999998754 45444
No 302
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=92.64 E-value=0.12 Score=48.24 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=22.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
|||.|.||||++|+.|++.|.++++
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~ 25 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQ 25 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCC
Confidence 4899999999999999999998754
No 303
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=92.59 E-value=0.16 Score=47.65 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+||.|.||+|++|+.|++.|.++++ +++.+
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~---~V~~~ 40 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY---TVHAT 40 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 57999999999999999999998754 44444
No 304
>PLN02583 cinnamoyl-CoA reductase
Probab=92.59 E-value=0.18 Score=46.25 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=26.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
..+|.|.||||++|+.+++.|.++|| +++.+.
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~---~V~~~~ 37 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGY---TVHAAV 37 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCC---EEEEEE
Confidence 46899999999999999999998865 454443
No 305
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=92.55 E-value=0.29 Score=46.26 Aligned_cols=69 Identities=16% Similarity=0.358 Sum_probs=42.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC--CCceee------eCCceeEEee-cCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS--AGKQLS------FQDKAYTVEE-LTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s--~G~~~~------~~~~~~~v~~-~d~~~~~~~DvVf~a~g 110 (279)
.||+||| .|.+|..+...+..+++ .+++++.-... .|+.+. +.+....+.. .|.+++.++|+|+.+.+
T Consensus 7 ~KI~IIG-aG~vG~~ia~~la~~gl--~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~~l~~aDiVI~tag 83 (321)
T PTZ00082 7 RKISLIG-SGNIGGVMAYLIVLKNL--GDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYEDIAGSDVVIVTAG 83 (321)
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCC--CeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHHHhCCCCEEEECCC
Confidence 6999999 59999999998887754 45555532211 122221 1112234442 23456789999999876
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 84 ~ 84 (321)
T PTZ00082 84 L 84 (321)
T ss_pred C
Confidence 5
No 306
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.54 E-value=0.65 Score=43.34 Aligned_cols=105 Identities=20% Similarity=0.272 Sum_probs=65.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.++.||+=|..+|.++. ....+....|+. + ++ .+....+|+|+.|+|... -+-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~-~~atVtvchs~T---~------------~l-~~~~k~ADIvV~AvGkp~--~i~ 218 (284)
T PRK14193 158 GAHVVVIGRGVTVGRPIGLLLTRRS-ENATVTLCHTGT---R------------DL-AAHTRRADIIVAAAGVAH--LVT 218 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHhhcc-CCCEEEEeCCCC---C------------CH-HHHHHhCCEEEEecCCcC--ccC
Confidence 5799999999999999999998731 123333332210 0 00 122467899999998752 244
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECCCC
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANPNC 171 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC 171 (279)
....+.|+.|||.+-.+ ..++ -++-.++ +..... ...+.-.||=
T Consensus 219 ~~~ik~GavVIDvGin~-~~~g--kl~GDvd-~~v~~~-----a~~iTPVPGG 262 (284)
T PRK14193 219 ADMVKPGAAVLDVGVSR-AGDG--KLVGDVH-PDVWEV-----AGAVSPNPGG 262 (284)
T ss_pred HHHcCCCCEEEEccccc-cCCC--cEEeecC-HhHHhh-----CCEEeCCCCC
Confidence 56678999999987665 2222 2566677 444432 2445555653
No 307
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=92.53 E-value=0.14 Score=50.86 Aligned_cols=91 Identities=14% Similarity=0.277 Sum_probs=53.8
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeC----CceeEE-eecC--ccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ----DKAYTV-EELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~----~~~~~v-~~~d--~~~~~~~DvVf~a~g~ 111 (279)
.+|+||| .|..|..|.+.|.+++| ++.+. .|+. .-..+... +..+.. .++. ...+.+.|+||+++++
T Consensus 2 ~~IgvIG-LG~MG~~lA~nL~~~G~---~V~v~-dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIG-LAVMGQNLALNIASRGF---KISVY-NRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEe-EhHHHHHHHHHHHHCCC---eEEEE-eCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 5899999 79999999999999876 44444 3321 11111110 111111 1111 1122357988888665
Q ss_pred c-hhhhhHHHH---HhCCCEEEEcCCCC
Q 023678 112 S-ISKKFGPIA---VEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~-~s~~~~~~~---~~aG~~VIDlS~~~ 135 (279)
+ ...+....+ ++.|..|||.+..+
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~ 104 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEW 104 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 5 344444433 46799999999875
No 308
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.49 E-value=0.31 Score=45.49 Aligned_cols=94 Identities=21% Similarity=0.298 Sum_probs=61.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..||+=|..+|.+++ ..+....++. + ++ .+....+|+|+.|+|... -+
T Consensus 157 ~Gk~vvViGrS~iVG~Pla~lL~~~~---atVt~chs~t---~------------~l-~~~~~~ADIvI~AvG~p~--~i 215 (284)
T PRK14190 157 SGKHVVVVGRSNIVGKPVGQLLLNEN---ATVTYCHSKT---K------------NL-AELTKQADILIVAVGKPK--LI 215 (284)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCC---CEEEEEeCCc---h------------hH-HHHHHhCCEEEEecCCCC--cC
Confidence 35799999999999999999998762 3333332210 0 11 123467899999998653 24
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||.+-.+ .+++ -.+-.++.+....
T Consensus 216 ~~~~ik~gavVIDvGi~~-~~~g--kl~GDvd~e~v~~ 250 (284)
T PRK14190 216 TADMVKEGAVVIDVGVNR-LENG--KLCGDVDFDNVKE 250 (284)
T ss_pred CHHHcCCCCEEEEeeccc-cCCC--CeeccCcHHHHhh
Confidence 456678999999987664 2222 2455667666553
No 309
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=92.47 E-value=0.45 Score=45.77 Aligned_cols=90 Identities=14% Similarity=0.258 Sum_probs=58.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee---CC--------------------ceeEEee
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF---QD--------------------KAYTVEE 93 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~---~~--------------------~~~~v~~ 93 (279)
.+.+||++|| .|.-|+-++.....- |.+++++++.++-.+.+.++ .+ ..+.+.+
T Consensus 15 G~PiRVGlIG-AG~mG~~ivtQi~~m--~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~ 91 (438)
T COG4091 15 GKPIRVGLIG-AGEMGTGIVTQIASM--PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTD 91 (438)
T ss_pred CCceEEEEec-ccccchHHHHHHhhc--CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEec
Confidence 3568999999 599999999999866 99999999655432211111 00 0122322
Q ss_pred -cC-ccCCCCCcEEEecCCC-chhhhhHHHHHhCCCEEE
Q 023678 94 -LT-EDSFDGVDIALFSAGG-SISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 94 -~d-~~~~~~~DvVf~a~g~-~~s~~~~~~~~~aG~~VI 129 (279)
.+ ......+|+++.|+|. .+..++.-.+..+|..+|
T Consensus 92 D~~~i~~~~~IdvIIdATG~p~vGA~~~l~Ai~h~KHlV 130 (438)
T COG4091 92 DAELIIANDLIDVIIDATGVPEVGAKIALEAILHGKHLV 130 (438)
T ss_pred chhhhhcCCcceEEEEcCCCcchhhHhHHHHHhcCCeEE
Confidence 11 1112468999999986 456677777778887665
No 310
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.45 E-value=0.69 Score=43.44 Aligned_cols=100 Identities=19% Similarity=0.291 Sum_probs=63.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
+..+|.|+|.+..||+=|..+|.+++.. ...+....|+. + ++ .+....+|+|+.|+|... -
T Consensus 160 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T---~------------~l-~~~~~~ADIvVsAvGkp~--~ 221 (297)
T PRK14168 160 SGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS---K------------NL-ARHCQRADILIVAAGVPN--L 221 (297)
T ss_pred CCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC---c------------CH-HHHHhhCCEEEEecCCcC--c
Confidence 3579999999999999999999875210 23333332211 0 00 122467999999987543 2
Q ss_pred hHHHHHhCCCEEEEcCCCCCCCC---CCceeeccCCHHhhhc
Q 023678 117 FGPIAVEKGSIVVDNSSAFRMVE---NVPLVIPEVNPEAMSG 155 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~R~~~---~vplvvPevN~~~i~~ 155 (279)
+-....+.|+.|||.+-.+-.++ +...++-.|+.+.+..
T Consensus 222 i~~~~ik~gavVIDvGin~~~~~~~~g~~~~~GDVdfe~v~~ 263 (297)
T PRK14168 222 VKPEWIKPGATVIDVGVNRVGTNESTGKAILSGDVDFDAVKE 263 (297)
T ss_pred cCHHHcCCCCEEEecCCCccCccccCCCcceeccccHHHHHh
Confidence 44566789999999876552111 2112567777766653
No 311
>PRK13243 glyoxylate reductase; Reviewed
Probab=92.45 E-value=0.21 Score=47.33 Aligned_cols=87 Identities=13% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-KKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s-~~~ 117 (279)
..+|+|+| .|.+|+.+.+.|..-+ .++.++ ++..... .... ......++ .+.+..+|+|++|+|-+.. +..
T Consensus 150 gktvgIiG-~G~IG~~vA~~l~~~G---~~V~~~-d~~~~~~-~~~~-~~~~~~~l-~ell~~aDiV~l~lP~t~~T~~~ 221 (333)
T PRK13243 150 GKTIGIIG-FGRIGQAVARRAKGFG---MRILYY-SRTRKPE-AEKE-LGAEYRPL-EELLRESDFVSLHVPLTKETYHM 221 (333)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEE-CCCCChh-hHHH-cCCEecCH-HHHHhhCCEEEEeCCCChHHhhc
Confidence 57999999 7999999999997653 355444 3322111 0000 01112121 1235789999999986542 222
Q ss_pred H----HHHHhCCCEEEEcCC
Q 023678 118 G----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+|+.|.
T Consensus 222 i~~~~~~~mk~ga~lIN~aR 241 (333)
T PRK13243 222 INEERLKLMKPTAILVNTAR 241 (333)
T ss_pred cCHHHHhcCCCCeEEEECcC
Confidence 2 122467899997764
No 312
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.45 E-value=0.63 Score=43.45 Aligned_cols=93 Identities=19% Similarity=0.267 Sum_probs=61.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+-+..+|.+++ ..+....++. + + + .+....+|+|+.|+|...- +-
T Consensus 157 Gk~vvVvGrs~~VG~Pla~lL~~~g---AtVtv~hs~t---~-------~-----l-~~~~~~ADIvV~AvG~p~~--i~ 215 (285)
T PRK14191 157 GKDVVIIGASNIVGKPLAMLMLNAG---ASVSVCHILT---K-------D-----L-SFYTQNADIVCVGVGKPDL--IK 215 (285)
T ss_pred CCEEEEECCCchhHHHHHHHHHHCC---CEEEEEeCCc---H-------H-----H-HHHHHhCCEEEEecCCCCc--CC
Confidence 5799999999999999999998763 3333332211 0 0 1 1234679999999986532 33
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
+...+.|+.|||.+-.+ .+++ -++-.++.+.+..
T Consensus 216 ~~~vk~GavVIDvGi~~-~~~g--klvGDvd~e~v~~ 249 (285)
T PRK14191 216 ASMVKKGAVVVDIGINR-LNDG--RLVGDVDFENVAP 249 (285)
T ss_pred HHHcCCCcEEEEeeccc-ccCC--ceeccccHHHHhh
Confidence 45668999999988765 2221 2456677666553
No 313
>PRK06153 hypothetical protein; Provisional
Probab=92.43 E-value=0.67 Score=45.09 Aligned_cols=96 Identities=19% Similarity=0.375 Sum_probs=61.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee----c----CC--------CCce---eee-------CCceeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----K----RS--------AGKQ---LSF-------QDKAYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s----~----~s--------~G~~---~~~-------~~~~~~v~ 92 (279)
..+|+|+|+ |-+|..++..|.+. +..++.++-. . |+ .|+. ... .+..+...
T Consensus 176 ~~~VaIVG~-GG~GS~Va~~LAR~--GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~ 252 (393)
T PRK06153 176 GQRIAIIGL-GGTGSYILDLVAKT--PVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPH 252 (393)
T ss_pred hCcEEEEcC-CccHHHHHHHHHHc--CCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEE
Confidence 468999995 88899999999988 4556665521 1 22 2220 000 01112111
Q ss_pred --ecCc---cCCCCCcEEEecCCCchhhhhHHH-HHhCCCEEEEcCCCCCC
Q 023678 93 --ELTE---DSFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 93 --~~d~---~~~~~~DvVf~a~g~~~s~~~~~~-~~~aG~~VIDlS~~~R~ 137 (279)
.++. ..+.++|+||.|++...++.++-+ +.+.|..+||.+-....
T Consensus 253 ~~~I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~l~~ 303 (393)
T PRK06153 253 PEYIDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMGLEL 303 (393)
T ss_pred eecCCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeeccee
Confidence 1222 235789999999999999887754 46789999997766544
No 314
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.30 E-value=0.71 Score=43.15 Aligned_cols=95 Identities=19% Similarity=0.287 Sum_probs=60.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|.|+|.+..||+=|..+|.+++ +....+....++. + ++ .+....+|+|+.|+|...- +
T Consensus 157 Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t---~------------~l-~~~~~~ADIVI~AvG~p~l--i 218 (286)
T PRK14184 157 GKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT---P------------DL-AEECREADFLFVAIGRPRF--V 218 (286)
T ss_pred CCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc---h------------hH-HHHHHhCCEEEEecCCCCc--C
Confidence 5799999999999999999998721 1123333332211 0 00 1234679999999976432 3
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||.+-++- + + . .+-.|+.+.+..
T Consensus 219 ~~~~vk~GavVIDVGi~~~-~-~-~-l~GDVdf~~v~~ 252 (286)
T PRK14184 219 TADMVKPGAVVVDVGINRT-D-D-G-LVGDCDFEGLSD 252 (286)
T ss_pred CHHHcCCCCEEEEeeeecc-C-C-C-ccCCccHHHHHh
Confidence 3455689999999887652 2 2 1 456677666653
No 315
>PRK09242 tropinone reductase; Provisional
Probab=92.29 E-value=0.31 Score=43.14 Aligned_cols=30 Identities=7% Similarity=0.203 Sum_probs=25.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~---~v~~~ 39 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGA---DVLIV 39 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC---EEEEE
Confidence 5899999999999999999998754 55544
No 316
>PLN02858 fructose-bisphosphate aldolase
Probab=92.23 E-value=0.16 Score=56.80 Aligned_cols=95 Identities=16% Similarity=0.204 Sum_probs=55.6
Q ss_pred eecccCCCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeCCceeEEeecCc-cCCCCCcEEEec
Q 023678 31 VRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQDKAYTVEELTE-DSFDGVDIALFS 108 (279)
Q Consensus 31 ~~~~~~~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a 108 (279)
+.|+.+ .+.+|++|| .|++|..+.+.|...+| ++... .++. .-..+...+ ....+ ++ +...++|+||.|
T Consensus 317 ~~~~~~-~~~~IGfIG-lG~MG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~G--a~~~~-s~~e~~~~aDvVi~~ 387 (1378)
T PLN02858 317 ITMQAK-PVKRIGFIG-LGAMGFGMASHLLKSNF---SVCGY-DVYKPTLVRFENAG--GLAGN-SPAEVAKDVDVLVIM 387 (1378)
T ss_pred hhcccc-CCCeEEEEC-chHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHcC--CeecC-CHHHHHhcCCEEEEe
Confidence 345432 357899999 89999999999998765 44433 2221 111111111 11111 22 234679999999
Q ss_pred CCCchh-hhhH------HHHHhCCCEEEEcCCC
Q 023678 109 AGGSIS-KKFG------PIAVEKGSIVVDNSSA 134 (279)
Q Consensus 109 ~g~~~s-~~~~------~~~~~aG~~VIDlS~~ 134 (279)
++.... ++.. -.....|..|||.|.-
T Consensus 388 V~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STv 420 (1378)
T PLN02858 388 VANEVQAENVLFGDLGAVSALPAGASIVLSSTV 420 (1378)
T ss_pred cCChHHHHHHHhchhhHHhcCCCCCEEEECCCC
Confidence 996543 3332 1123568899999874
No 317
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=92.20 E-value=0.69 Score=43.49 Aligned_cols=96 Identities=18% Similarity=0.184 Sum_probs=62.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|||.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|.|.. .-+-
T Consensus 167 Gk~vvVIGRS~iVGkPla~lL~~~---~ATVtvchs~T---~------------nl-~~~~~~ADIvv~AvGk~--~~i~ 225 (299)
T PLN02516 167 GKKAVVVGRSNIVGLPVSLLLLKA---DATVTVVHSRT---P------------DP-ESIVREADIVIAAAGQA--MMIK 225 (299)
T ss_pred CCEEEEECCCccchHHHHHHHHHC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEcCCCc--CccC
Confidence 579999999999999999999876 23444443321 0 00 12246789999999874 3444
Q ss_pred HHHHhCCCEEEEcCCCCCCCCC---CceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVEN---VPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~---vplvvPevN~~~i~~ 155 (279)
....+.|+.|||.+-.+..++- ..-++-.++.+.+..
T Consensus 226 ~~~vk~gavVIDvGin~~~~~~~~~g~kl~GDvd~e~v~~ 265 (299)
T PLN02516 226 GDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGDVDFAEVSK 265 (299)
T ss_pred HHHcCCCCEEEEeeccccCcccccCCCceEcCcChHHhhh
Confidence 5677899999998866532210 112455666666553
No 318
>PRK07574 formate dehydrogenase; Provisional
Probab=92.16 E-value=0.35 Score=46.94 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=51.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.++|+|+| .|.+|+.+.+.|..- ..++.+. ++......... ...... .++ .+.+..+|+|+.++|-+...+.
T Consensus 192 gktVGIvG-~G~IG~~vA~~l~~f---G~~V~~~-dr~~~~~~~~~-~~g~~~~~~l-~ell~~aDvV~l~lPlt~~T~~ 264 (385)
T PRK07574 192 GMTVGIVG-AGRIGLAVLRRLKPF---DVKLHYT-DRHRLPEEVEQ-ELGLTYHVSF-DSLVSVCDVVTIHCPLHPETEH 264 (385)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhC---CCEEEEE-CCCCCchhhHh-hcCceecCCH-HHHhhcCCEEEEcCCCCHHHHH
Confidence 47899999 799999999999764 3355444 33211111100 001111 121 2345789999999985543222
Q ss_pred H-----HHHHhCCCEEEEcCC
Q 023678 118 G-----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~-----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+|+.+-
T Consensus 265 li~~~~l~~mk~ga~lIN~aR 285 (385)
T PRK07574 265 LFDADVLSRMKRGSYLVNTAR 285 (385)
T ss_pred HhCHHHHhcCCCCcEEEECCC
Confidence 1 122467899997663
No 319
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=92.15 E-value=0.23 Score=46.91 Aligned_cols=92 Identities=23% Similarity=0.260 Sum_probs=54.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHc-CCCCceEEEEEeecCCC-Cceeee--C-CceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSA-GKQLSF--Q-DKAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~-~~~p~~~l~~l~s~~s~-G~~~~~--~-~~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
..+++|+| +|..|+..++.|.. + +..++. +.+|+.. .+.+.. . ...+.+...+ .+.+.++|+|+.|++.
T Consensus 129 ~~~v~iiG-aG~qA~~~~~al~~~~--~i~~v~-V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 129 SSVVAIFG-AGMQARLQLEALTLVR--DIRSAR-IWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPS 204 (326)
T ss_pred CcEEEEEC-CCHHHHHHHHHHHHhC--CccEEE-EECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCC
Confidence 46899999 69999999998864 4 433443 4444321 111110 0 0012232222 2235789999999987
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCC
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~ 135 (279)
..- -+-...++.|..|.+.+++.
T Consensus 205 ~~p-~i~~~~l~~g~~i~~vg~~~ 227 (326)
T TIGR02992 205 ETP-ILHAEWLEPGQHVTAMGSDA 227 (326)
T ss_pred CCc-EecHHHcCCCcEEEeeCCCC
Confidence 531 22245678999988777653
No 320
>PRK07856 short chain dehydrogenase; Provisional
Probab=92.12 E-value=0.42 Score=42.30 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+++.|.||+|.+|+++.+.|.++++ +++++
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~g~---~v~~~ 36 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAAGA---TVVVC 36 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
No 321
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=92.09 E-value=0.23 Score=45.26 Aligned_cols=37 Identities=27% Similarity=0.465 Sum_probs=32.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~ 75 (279)
++||.|.|.||+||+.+.+.+.+.++++.+.+...+.
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk 37 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK 37 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc
Confidence 3689999999999999999999998888888877654
No 322
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=92.07 E-value=0.24 Score=46.36 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=41.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceeee--C----CceeEEee-cCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF--Q----DKAYTVEE-LTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~~--~----~~~~~v~~-~d~~~~~~~DvVf~a~g 110 (279)
+||+|+|+ |++|..+...|+.+++- +++++...+.. |+.+.. . .....+.. .+.+++.++|+||.|+|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~--~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~~~~aDiVIitag 78 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELA--DLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYADTANSDIVVITAG 78 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHHhCCCCEEEEcCC
Confidence 68999995 99999999999887542 55555322211 221111 0 01112321 22234688999999998
Q ss_pred C
Q 023678 111 G 111 (279)
Q Consensus 111 ~ 111 (279)
.
T Consensus 79 ~ 79 (305)
T TIGR01763 79 L 79 (305)
T ss_pred C
Confidence 4
No 323
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.05 E-value=0.71 Score=43.07 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=62.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.+++ ..+....|+. +. + .+....+|+|+.|+|. ..-+-
T Consensus 157 Gk~vvViGrS~iVGkPla~lL~~~~---AtVtichs~T---~n------------l-~~~~~~ADIvI~AvGk--~~~i~ 215 (282)
T PRK14182 157 GKRALVVGRSNIVGKPMAMMLLERH---ATVTIAHSRT---AD------------L-AGEVGRADILVAAIGK--AELVK 215 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC---CEEEEeCCCC---CC------------H-HHHHhhCCEEEEecCC--cCccC
Confidence 5799999999999999999998762 3333332211 10 0 1223678999999985 33455
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
+...+.|+.|||.+-.+-.+ + -.+-.|+.+..+.
T Consensus 216 ~~~ik~gaiVIDvGin~~~~-g--kl~GDVd~~~v~~ 249 (282)
T PRK14182 216 GAWVKEGAVVIDVGMNRLAD-G--KLVGDVEFAAAAA 249 (282)
T ss_pred HHHcCCCCEEEEeeceecCC-C--CeeCCCCHHHHHh
Confidence 66778999999987665222 1 2566677666553
No 324
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=92.04 E-value=0.16 Score=52.23 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=25.4
Q ss_pred CCCCCEEEEECcCcHHHHHHHHHHHcCCCC
Q 023678 36 QESAPSVAVVGVTGAVGQEFLSVLSDRDFP 65 (279)
Q Consensus 36 ~~~~~kVaIiGATG~VG~eLl~lL~~~~~p 65 (279)
++++|||.|.||+|++|+.|++.|.++++.
T Consensus 377 ~~~~mkiLVtGa~G~iG~~l~~~L~~~g~~ 406 (668)
T PLN02260 377 GKPSLKFLIYGRTGWIGGLLGKLCEKQGIA 406 (668)
T ss_pred CCCCceEEEECCCchHHHHHHHHHHhCCCe
Confidence 345689999999999999999999887543
No 325
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=92.03 E-value=0.19 Score=43.65 Aligned_cols=27 Identities=15% Similarity=0.258 Sum_probs=23.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++++|.|.||+|.+|+.+++.|.++++
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~ 30 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGA 30 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC
Confidence 346899999999999999999998854
No 326
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=92.02 E-value=0.11 Score=47.96 Aligned_cols=84 Identities=14% Similarity=0.188 Sum_probs=48.9
Q ss_pred EECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceeeeCCceeEEeecCc-cCCCCCcEEEecCCCchh-hhhH--
Q 023678 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSIS-KKFG-- 118 (279)
Q Consensus 44 IiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s-~~~~-- 118 (279)
||| .|..|..+.+.|.+.+| ++... +++... ..+...+ ....+ +. +...++|+||+|++.... ++..
T Consensus 1 ~IG-lG~mG~~mA~~L~~~G~---~V~v~-dr~~~~~~~l~~~g--~~~~~-s~~~~~~~advVil~vp~~~~~~~v~~g 72 (288)
T TIGR01692 1 FIG-LGNMGGPMAANLLKAGH---PVRVF-DLFPDAVEEAVAAG--AQAAA-SPAEAAEGADRVITMLPAGQHVISVYSG 72 (288)
T ss_pred CCc-ccHhHHHHHHHHHhCCC---eEEEE-eCCHHHHHHHHHcC--CeecC-CHHHHHhcCCEEEEeCCChHHHHHHHcC
Confidence 477 89999999999998765 34433 332210 1111111 11111 12 234689999999998543 4433
Q ss_pred -HH---HHhCCCEEEEcCCCC
Q 023678 119 -PI---AVEKGSIVVDNSSAF 135 (279)
Q Consensus 119 -~~---~~~aG~~VIDlS~~~ 135 (279)
.. ....|..|||.|+-.
T Consensus 73 ~~~l~~~~~~g~~vid~st~~ 93 (288)
T TIGR01692 73 DEGILPKVAKGSLLIDCSTID 93 (288)
T ss_pred cchHhhcCCCCCEEEECCCCC
Confidence 22 235688999998643
No 327
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=91.92 E-value=0.15 Score=47.84 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRS 68 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~ 68 (279)
.+||.|.||.|+||+.|++.|...+|..+.
T Consensus 27 ~lrI~itGgaGFIgSHLvdkLm~egh~VIa 56 (350)
T KOG1429|consen 27 NLRILITGGAGFIGSHLVDKLMTEGHEVIA 56 (350)
T ss_pred CcEEEEecCcchHHHHHHHHHHhcCCeEEE
Confidence 489999999999999999999887664443
No 328
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.90 E-value=0.38 Score=45.19 Aligned_cols=96 Identities=21% Similarity=0.258 Sum_probs=62.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|||.+..||+=|..+|.+++ ..+....|+. + ++ .+....+|+|+.|.|.. .-+-
T Consensus 158 Gk~vvVIGrS~iVGkPla~lL~~~~---atVtv~hs~T---~------------~l-~~~~~~ADIvIsAvGkp--~~i~ 216 (297)
T PRK14186 158 GKKAVVVGRSILVGKPLALMLLAAN---ATVTIAHSRT---Q------------DL-ASITREADILVAAAGRP--NLIG 216 (297)
T ss_pred CCEEEEECCCccchHHHHHHHHHCC---CEEEEeCCCC---C------------CH-HHHHhhCCEEEEccCCc--CccC
Confidence 5799999999999999999998762 3433332211 0 00 11236789999999864 2344
Q ss_pred HHHHhCCCEEEEcCCCCCCCCC-CceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVEN-VPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~-vplvvPevN~~~i~~ 155 (279)
....+.|+.|||.+-.+--++. .--++-.|+.+.+..
T Consensus 217 ~~~ik~gavVIDvGin~~~~~~~~gkl~GDvd~~~v~~ 254 (297)
T PRK14186 217 AEMVKPGAVVVDVGIHRLPSSDGKTRLCGDVDFEEVEP 254 (297)
T ss_pred HHHcCCCCEEEEeccccccccccCCceeCCccHHHHHh
Confidence 5677899999998766521110 012566677666553
No 329
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.89 E-value=0.32 Score=45.23 Aligned_cols=92 Identities=23% Similarity=0.301 Sum_probs=59.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..+|+-|..+|.+.+ ..+....++. + ++ .+....+|+||.|.|.. .-+-
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~---atVtv~hs~t---~------------~L-~~~~~~ADIvI~Avgk~--~lv~ 210 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNAD---ATVTICHSKT---E------------NL-KAELRQADILVSAAGKA--GFIT 210 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCC---CeeEEEecCh---h------------HH-HHHHhhCCEEEECCCcc--cccC
Confidence 5799999999999999999987652 3333333211 0 11 12346799999999843 2233
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
+...+.|+.|||.+-++- + + -.+-.++.+.++.
T Consensus 211 ~~~vk~GavVIDVgi~~~-~-g--kl~GDvdf~~~~~ 243 (279)
T PRK14178 211 PDMVKPGATVIDVGINQV-N-G--KLCGDVDFDAVKE 243 (279)
T ss_pred HHHcCCCcEEEEeecccc-C-C--CCcCCccHHHHHh
Confidence 445689999999988762 2 1 2345566666553
No 330
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.83 E-value=0.63 Score=43.98 Aligned_cols=89 Identities=17% Similarity=0.286 Sum_probs=54.9
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ecCCCCceeee--------CCceeEEe----e
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SKRSAGKQLSF--------QDKAYTVE----E 93 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~~s~G~~~~~--------~~~~~~v~----~ 93 (279)
||.|+|+ |-+|.++++.|...|+..+. ++. ..+..|+.-.. ....+.+. +
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~It--IvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~ 77 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIH--IIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHAN 77 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEE--EEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEecc
Confidence 5899995 99999999999877554333 331 11122321110 01122222 1
Q ss_pred cCc-----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 94 LTE-----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 94 ~d~-----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
++. +-+.+.|+|+.|+..-.++.+..++ ...++.+||..
T Consensus 78 i~~~~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~g 122 (312)
T cd01489 78 IKDPDFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESG 122 (312)
T ss_pred CCCccchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence 221 2257899999999998888877655 67889999853
No 331
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=91.79 E-value=0.24 Score=45.60 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=25.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+|.|.||||++|+.|++.|.++++ ..+++.+.
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~-~~~V~~l~ 32 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRST-QAKVICLV 32 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCC-CCEEEEEE
Confidence 488999999999999999998753 24566664
No 332
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=91.78 E-value=0.23 Score=46.55 Aligned_cols=31 Identities=23% Similarity=0.119 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||++|+.+++.|.++++ +++.+
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~---~V~~~ 34 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGA---EVYGY 34 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
No 333
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=91.77 E-value=0.19 Score=46.93 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=25.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++|.|.||||++|+.|++.|.++++ +++.+.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~---~V~~~~ 31 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY---EVHGLI 31 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC---EEEEEe
Confidence 3799999999999999999998754 555553
No 334
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.75 E-value=0.12 Score=47.63 Aligned_cols=40 Identities=25% Similarity=0.142 Sum_probs=31.8
Q ss_pred hcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCC
Q 023678 219 LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVS 266 (279)
Q Consensus 219 ~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~ 266 (279)
..|....+.+-..++..|++|+|++ ||.|+.||++|||+.
T Consensus 182 iSGAG~apgv~~vdildnilp~igg--------ee~k~ewet~kiL~s 221 (361)
T KOG4777|consen 182 ISGAGAAPGVELVDILDNILPGIGG--------EENKFEWETAKILFS 221 (361)
T ss_pred hccCCcCCCchHHHHHHhhcCCCCc--------cchhhhHHHHHhhhc
Confidence 3455444555556789999999999 999999999999964
No 335
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.74 E-value=0.65 Score=43.99 Aligned_cols=93 Identities=14% Similarity=0.158 Sum_probs=53.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cc---eee-------eCC-------ceeEEeecCc-cC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GK---QLS-------FQD-------KAYTVEELTE-DS 98 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~---~~~-------~~~-------~~~~v~~~d~-~~ 98 (279)
..||+||| +|.+|+.+...++.+||+ +.++ .++.. .+ .+. ..+ ..+.+.. +. +.
T Consensus 7 i~~VaVIG-aG~MG~giA~~~a~aG~~---V~l~-D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~a 80 (321)
T PRK07066 7 IKTFAAIG-SGVIGSGWVARALAHGLD---VVAW-DPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEAC 80 (321)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHhCCCe---EEEE-eCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHH
Confidence 45899999 599999999999988664 3333 22110 00 000 000 0111111 12 23
Q ss_pred CCCCcEEEecCCCchhhh--h---HHHHHhCCCEEEEcCCCCCC
Q 023678 99 FDGVDIALFSAGGSISKK--F---GPIAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 99 ~~~~DvVf~a~g~~~s~~--~---~~~~~~aG~~VIDlS~~~R~ 137 (279)
+.++|+|+.|.+-....+ + +.+++..++.+-.+||.+..
T Consensus 81 v~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~ 124 (321)
T PRK07066 81 VADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLP 124 (321)
T ss_pred hcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCH
Confidence 579999999998765422 2 22344567755567777654
No 336
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.74 E-value=0.76 Score=45.18 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=61.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc------eeeeCCceeEEeecCccCCCCCcEEEecCCCch
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK------QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~------~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
.||+|+| .|..|+.+.+.|.++|+ ++... ..+.... .+...+..+......++.+.+.|+|+...+-..
T Consensus 15 ~~i~v~G-~G~sG~a~a~~L~~~G~---~V~~~-D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~ 89 (458)
T PRK01710 15 KKVAVVG-IGVSNIPLIKFLVKLGA---KVTAF-DKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRI 89 (458)
T ss_pred CeEEEEc-ccHHHHHHHHHHHHCCC---EEEEE-CCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCC
Confidence 5899999 79999999999998754 33333 2221111 111112122221111233567899999866666
Q ss_pred hhhhHHHHHhCCCEEEEcCC-CCCCCCCCceeeccCCH
Q 023678 114 SKKFGPIAVEKGSIVVDNSS-AFRMVENVPLVIPEVNP 150 (279)
Q Consensus 114 s~~~~~~~~~aG~~VIDlS~-~~R~~~~vplvvPevN~ 150 (279)
......++.+.|+.|+.-.- .+|+...-..+|-+=|.
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnG 127 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDG 127 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCC
Confidence 67788888999999984211 12332211245566664
No 337
>PRK08328 hypothetical protein; Provisional
Probab=91.73 E-value=0.45 Score=42.71 Aligned_cols=91 Identities=23% Similarity=0.276 Sum_probs=55.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ecCCCCcee---------eeCCceeEEe--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SKRSAGKQL---------SFQDKAYTVE-- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~~s~G~~~---------~~~~~~~~v~-- 92 (279)
..||+|+|+ |-+|.++++.|...|...+ .++. ..+..|+.. .....++.+.
T Consensus 27 ~~~VlIiG~-GGlGs~ia~~La~~Gvg~i--~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 27 KAKVAVVGV-GGLGSPVAYYLAAAGVGRI--LLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCCEE--EEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 358999995 8899999999998754433 3331 112234310 0011122232
Q ss_pred --ecCcc----CCCCCcEEEecCCCchhhhhHHH-HHhCCCEEEEcC
Q 023678 93 --ELTED----SFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNS 132 (279)
Q Consensus 93 --~~d~~----~~~~~DvVf~a~g~~~s~~~~~~-~~~aG~~VIDlS 132 (279)
.++.+ .++++|+||.|++...++.+..+ +.+.|+++|..+
T Consensus 104 ~~~~~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~ 150 (231)
T PRK08328 104 VGRLSEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGA 150 (231)
T ss_pred eccCCHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 12211 24689999999998777666654 467899888643
No 338
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.70 E-value=0.25 Score=47.18 Aligned_cols=87 Identities=20% Similarity=0.278 Sum_probs=57.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC--ceEEEEEeecCCCCceeeeCC----ceeEEe-ecCccCC--CCCcEEEec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP--YRSIKMLASKRSAGKQLSFQD----KAYTVE-ELTEDSF--DGVDIALFS 108 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p--~~~l~~l~s~~s~G~~~~~~~----~~~~v~-~~d~~~~--~~~DvVf~a 108 (279)
..+|++|+|+ |.+++.+++.|..- | ...+++++++ +.-+..+|.. .+..+. ..+ +.+ ..+|+|...
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~--p~s~~~Ivava~~-s~~~A~~fAq~~~~~~~k~y~syE-eLakd~~vDvVyi~ 79 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTL--PESNHQIVAVADP-SLERAKEFAQRHNIPNPKAYGSYE-ELAKDPEVDVVYIS 79 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccC--cccCcEEEEEecc-cHHHHHHHHHhcCCCCCccccCHH-HHhcCCCcCEEEeC
Confidence 3589999995 99999999999665 6 7788899876 3333333311 111221 111 111 368999999
Q ss_pred CCCchhhhhHHHHHhCCCEEE
Q 023678 109 AGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 109 ~g~~~s~~~~~~~~~aG~~VI 129 (279)
+++....+++-.+++.|..|.
T Consensus 80 ~~~~qH~evv~l~l~~~K~VL 100 (351)
T KOG2741|consen 80 TPNPQHYEVVMLALNKGKHVL 100 (351)
T ss_pred CCCccHHHHHHHHHHcCCcEE
Confidence 998888888877777776654
No 339
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=91.69 E-value=1.1 Score=40.92 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=56.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcC-------CCC-ceEEEEEe----ecCCCCcee----------ee-------CCcee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDR-------DFP-YRSIKMLA----SKRSAGKQL----------SF-------QDKAY 89 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~-------~~p-~~~l~~l~----s~~s~G~~~----------~~-------~~~~~ 89 (279)
..||+|+|+ |-+|.++++.|++- +|+ ..++.++- +.+..++.+ .. ....+
T Consensus 11 ~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~ 89 (244)
T TIGR03736 11 PVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT 89 (244)
T ss_pred CCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence 479999995 88999999999865 334 22554442 111222111 00 00012
Q ss_pred EEee----cCcc-CCCCCcEEEecCCCchhhhhHHHHHhC----CCEEEEcCC
Q 023678 90 TVEE----LTED-SFDGVDIALFSAGGSISKKFGPIAVEK----GSIVVDNSS 133 (279)
Q Consensus 90 ~v~~----~d~~-~~~~~DvVf~a~g~~~s~~~~~~~~~a----G~~VIDlS~ 133 (279)
.+.. ++.+ .+.++|+|+.|++.-.++.+..+.... ...+||...
T Consensus 90 ~i~a~~~~~~~~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn 142 (244)
T TIGR03736 90 DWTAHPERVERSSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGN 142 (244)
T ss_pred eEEEEEeeeCchhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccC
Confidence 2221 2221 245789999999999999888666544 467888665
No 340
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.68 E-value=0.52 Score=43.95 Aligned_cols=92 Identities=17% Similarity=0.269 Sum_probs=61.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.+++ ..+....++. + ++ .+....+|+|+.|.|...- +-
T Consensus 158 Gk~vvViGrS~~VGkPla~lL~~~~---ATVt~chs~T---~------------dl-~~~~k~ADIvIsAvGkp~~--i~ 216 (282)
T PRK14180 158 GAYAVVVGASNVVGKPVSQLLLNAK---ATVTTCHRFT---T------------DL-KSHTTKADILIVAVGKPNF--IT 216 (282)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC---CEEEEEcCCC---C------------CH-HHHhhhcCEEEEccCCcCc--CC
Confidence 5799999999999999999998762 3433332211 0 00 1124678999999986532 44
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
....+.|+.|||.+-.+ .+ + -++-.++.+.++.
T Consensus 217 ~~~vk~gavVIDvGin~-~~-g--kl~GDvd~~~v~~ 249 (282)
T PRK14180 217 ADMVKEGAVVIDVGINH-VD-G--KIVGDVDFAAVKD 249 (282)
T ss_pred HHHcCCCcEEEEecccc-cC-C--ceeCCcCHHHHHh
Confidence 56678999999987665 22 2 2556677666653
No 341
>PLN03139 formate dehydrogenase; Provisional
Probab=91.67 E-value=0.39 Score=46.65 Aligned_cols=87 Identities=17% Similarity=0.305 Sum_probs=50.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE-eecCccCCCCCcEEEecCCCchhhh-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-EELTEDSFDGVDIALFSAGGSISKK- 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v-~~~d~~~~~~~DvVf~a~g~~~s~~- 116 (279)
.++|+|+| .|.+|+.+.+.|..- ..++.+. ++........ ....... .++ .+.+..+|+|++++|.....+
T Consensus 199 gktVGIVG-~G~IG~~vA~~L~af---G~~V~~~-d~~~~~~~~~-~~~g~~~~~~l-~ell~~sDvV~l~lPlt~~T~~ 271 (386)
T PLN03139 199 GKTVGTVG-AGRIGRLLLQRLKPF---NCNLLYH-DRLKMDPELE-KETGAKFEEDL-DAMLPKCDVVVINTPLTEKTRG 271 (386)
T ss_pred CCEEEEEe-ecHHHHHHHHHHHHC---CCEEEEE-CCCCcchhhH-hhcCceecCCH-HHHHhhCCEEEEeCCCCHHHHH
Confidence 57999999 799999999999753 3455444 3321111110 0001111 122 133578999999998543322
Q ss_pred hH----HHHHhCCCEEEEcC
Q 023678 117 FG----PIAVEKGSIVVDNS 132 (279)
Q Consensus 117 ~~----~~~~~aG~~VIDlS 132 (279)
.. -...+.|+.+|+.+
T Consensus 272 li~~~~l~~mk~ga~lIN~a 291 (386)
T PLN03139 272 MFNKERIAKMKKGVLIVNNA 291 (386)
T ss_pred HhCHHHHhhCCCCeEEEECC
Confidence 22 12246788999765
No 342
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=91.63 E-value=0.54 Score=44.57 Aligned_cols=84 Identities=23% Similarity=0.392 Sum_probs=50.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCchh--h
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSIS--K 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~s--~ 115 (279)
.++|+||| .|.+|+.+.+.|...++ ++... ++.. .....+ .... ++ .+.+.++|+|++|+|.... .
T Consensus 146 g~~VgIIG-~G~IG~~vA~~L~~~G~---~V~~~-d~~~-~~~~~~----~~~~~~l-~ell~~aDiVil~lP~t~~t~~ 214 (330)
T PRK12480 146 NMTVAIIG-TGRIGAATAKIYAGFGA---TITAY-DAYP-NKDLDF----LTYKDSV-KEAIKDADIISLHVPANKESYH 214 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-eCCh-hHhhhh----hhccCCH-HHHHhcCCEEEEeCCCcHHHHH
Confidence 46899999 79999999999986543 45444 3321 111100 1111 11 2345789999999997643 2
Q ss_pred hhHHHH---HhCCCEEEEcCC
Q 023678 116 KFGPIA---VEKGSIVVDNSS 133 (279)
Q Consensus 116 ~~~~~~---~~aG~~VIDlS~ 133 (279)
.+.... .+.|+.+|+.+-
T Consensus 215 li~~~~l~~mk~gavlIN~aR 235 (330)
T PRK12480 215 LFDKAMFDHVKKGAILVNAAR 235 (330)
T ss_pred HHhHHHHhcCCCCcEEEEcCC
Confidence 222222 356888887653
No 343
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=91.60 E-value=0.35 Score=48.11 Aligned_cols=155 Identities=15% Similarity=0.237 Sum_probs=79.5
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeC---CceeEEe-ecC--ccCCCCCcEEEecCCCc-
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQ---DKAYTVE-ELT--EDSFDGVDIALFSAGGS- 112 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~---~~~~~v~-~~d--~~~~~~~DvVf~a~g~~- 112 (279)
+|+||| .|..|+.|.+.|.+++| ++.+. .++.. -+.+... +..+... ++. ...+..+|+||+|++++
T Consensus 1 ~IG~IG-LG~MG~~mA~nL~~~G~---~V~v~-drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~ 75 (467)
T TIGR00873 1 DIGVIG-LAVMGSNLALNMADHGF---TVSVY-NRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGA 75 (467)
T ss_pred CEEEEe-eHHHHHHHHHHHHhcCC---eEEEE-eCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcH
Confidence 489999 89999999999999876 44444 33211 1111101 1011111 111 11234689999999884
Q ss_pred hhhhhHHHH---HhCCCEEEEcCCCCCCC----------CCCceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHh
Q 023678 113 ISKKFGPIA---VEKGSIVVDNSSAFRMV----------ENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMA 179 (279)
Q Consensus 113 ~s~~~~~~~---~~aG~~VIDlS~~~R~~----------~~vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~la 179 (279)
...+....+ ++.|-.|||.+..+--+ .++.|+=-.|..-.-.. + ... .-.+|+..-+ .-.
T Consensus 76 ~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA-~----~G~-~im~GG~~~a-~~~ 148 (467)
T TIGR00873 76 PVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGA-R----KGP-SIMPGGSAEA-WPL 148 (467)
T ss_pred HHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHH-h----cCC-cCCCCCCHHH-HHH
Confidence 344444443 45788999998754111 11222222222211000 0 122 2245665544 355
Q ss_pred hhchhhhcCcc--EEEEEEeecccccChhh
Q 023678 180 ATPLHRRAKVT--RMVVSTYQAASGAGAAA 207 (279)
Q Consensus 180 L~PL~~~~~i~--~v~vtt~q~vSGaG~~~ 207 (279)
++|+++...-+ ..-..+|-|-.|+|...
T Consensus 149 ~~p~L~~ia~~~~~~~~~~~~G~~GsG~~v 178 (467)
T TIGR00873 149 VAPIFQKIAAKVDGEPCCTWIGPDGAGHYV 178 (467)
T ss_pred HHHHHHHHhhhcCCCCceEEECCcCHHHHH
Confidence 67877765322 11134577777888443
No 344
>PRK12828 short chain dehydrogenase; Provisional
Probab=91.59 E-value=0.23 Score=42.99 Aligned_cols=31 Identities=23% Similarity=0.393 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||||.+|+.+++.|.++++ +++.+
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~G~---~v~~~ 37 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAARGA---RVALI 37 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHCCC---eEEEE
Confidence 46899999999999999999988754 44444
No 345
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=91.56 E-value=0.66 Score=40.65 Aligned_cols=26 Identities=15% Similarity=0.247 Sum_probs=23.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||+|.+|+.+.+.|.++++
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~g~ 31 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQEGA 31 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC
Confidence 46899999999999999999998753
No 346
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=91.54 E-value=1 Score=39.48 Aligned_cols=32 Identities=16% Similarity=0.200 Sum_probs=25.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.+++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 7 ~~k~vlItGas~~iG~~la~~l~~~G~---~v~~~ 38 (252)
T PRK08220 7 SGKTVWVTGAAQGIGYAVALAFVEAGA---KVIGF 38 (252)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999988753 44444
No 347
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.54 E-value=0.45 Score=44.36 Aligned_cols=94 Identities=20% Similarity=0.276 Sum_probs=61.1
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|+|...- +
T Consensus 156 ~Gk~vvVvGrS~iVGkPla~lL~~~---~atVt~chs~T---~------------nl-~~~~~~ADIvIsAvGkp~~--i 214 (282)
T PRK14166 156 EGKDAVIIGASNIVGRPMATMLLNA---GATVSVCHIKT---K------------DL-SLYTRQADLIIVAAGCVNL--L 214 (282)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEcCCCcCc--c
Confidence 3579999999999999999999875 23433332211 0 00 1123678999999986532 3
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-....+.|+.|||.+-.+ .+++ -++-.|+.+..+.
T Consensus 215 ~~~~vk~GavVIDvGin~-~~~g--kl~GDVd~~~v~~ 249 (282)
T PRK14166 215 RSDMVKEGVIVVDVGINR-LESG--KIVGDVDFEEVSK 249 (282)
T ss_pred CHHHcCCCCEEEEecccc-cCCC--CeeCCCCHHHHHh
Confidence 455678999999987554 2222 2556677666553
No 348
>PLN02858 fructose-bisphosphate aldolase
Probab=91.52 E-value=0.23 Score=55.56 Aligned_cols=87 Identities=15% Similarity=0.110 Sum_probs=53.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCc-cCCCCCcEEEecCCCchhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTE-DSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~-~~~~~~DvVf~a~g~~~s~ 115 (279)
..||++|| .|..|..+.+.|.+++|+ +... .+ +..+ .+...+ ..+.+ ++ +...++|+||.|++.....
T Consensus 4 ~~~IGfIG-LG~MG~~mA~~L~~~G~~---v~v~-dr-~~~~~~~l~~~G--a~~~~-s~~e~a~~advVi~~l~~~~~v 74 (1378)
T PLN02858 4 AGVVGFVG-LDSLSFELASSLLRSGFK---VQAF-EI-STPLMEKFCELG--GHRCD-SPAEAAKDAAALVVVLSHPDQV 74 (1378)
T ss_pred CCeEEEEc-hhHHHHHHHHHHHHCCCe---EEEE-cC-CHHHHHHHHHcC--CeecC-CHHHHHhcCCEEEEEcCChHHH
Confidence 36899999 899999999999988664 4334 22 2221 111111 11221 22 2345799999999987553
Q ss_pred hhH----HHH---HhCCCEEEEcCCC
Q 023678 116 KFG----PIA---VEKGSIVVDNSSA 134 (279)
Q Consensus 116 ~~~----~~~---~~aG~~VIDlS~~ 134 (279)
+-+ ..+ +..|..|||.|..
T Consensus 75 ~~V~~g~~g~~~~l~~g~iivd~STi 100 (1378)
T PLN02858 75 DDVFFGDEGAAKGLQKGAVILIRSTI 100 (1378)
T ss_pred HHHHhchhhHHhcCCCcCEEEECCCC
Confidence 332 112 2468889999865
No 349
>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]
Probab=91.46 E-value=0.32 Score=45.51 Aligned_cols=72 Identities=26% Similarity=0.473 Sum_probs=42.8
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCce-EEEEEeecCCCC--ceeeeCCceeEEeecC-----ccCCCCCcEEEec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYR-SIKMLASKRSAG--KQLSFQDKAYTVEELT-----EDSFDGVDIALFS 108 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~-~l~~l~s~~s~G--~~~~~~~~~~~v~~~d-----~~~~~~~DvVf~a 108 (279)
....||||+||.|-+|+-|--+|... |.+ ++.+..-+...| ..+++......+..+. ...+.++|+|+..
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK~n--p~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIP 103 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLKLN--PLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIP 103 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHhcC--cccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEec
Confidence 55799999999999999987777654 655 333332222223 2233222223333332 1235789999887
Q ss_pred CC
Q 023678 109 AG 110 (279)
Q Consensus 109 ~g 110 (279)
.|
T Consensus 104 AG 105 (345)
T KOG1494|consen 104 AG 105 (345)
T ss_pred CC
Confidence 65
No 350
>PLN02686 cinnamoyl-CoA reductase
Probab=91.44 E-value=0.25 Score=47.08 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
+++++|.|.||+|++|+.|++.|.++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~G~ 78 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRHGY 78 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHCCC
Confidence 4467999999999999999999998764
No 351
>PRK06138 short chain dehydrogenase; Provisional
Probab=91.43 E-value=0.33 Score=42.53 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+.|++.|.++++ +++.+
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~G~---~v~~~ 35 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFAREGA---RVVVA 35 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC---eEEEe
Confidence 45899999999999999999998754 45444
No 352
>PRK05693 short chain dehydrogenase; Provisional
Probab=91.38 E-value=0.41 Score=42.95 Aligned_cols=30 Identities=13% Similarity=0.420 Sum_probs=24.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++.|.||+|.+|+.+++.|.++++ +++++
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~---~V~~~ 31 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY---EVWAT 31 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999988754 45444
No 353
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=91.35 E-value=0.53 Score=44.04 Aligned_cols=107 Identities=15% Similarity=0.249 Sum_probs=60.8
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCCCceEEEEE--eecCC-----------CCceeee--------CCceeEEe----ecC
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML--ASKRS-----------AGKQLSF--------QDKAYTVE----ELT 95 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l--~s~~s-----------~G~~~~~--------~~~~~~v~----~~d 95 (279)
||.|+|+ |-+|.++++.|...|+..+.++=. ...+. .|+.-.. ....+.+. .++
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~ 79 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQ 79 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 5899994 889999999999886654433211 11112 2321110 01122222 121
Q ss_pred ---ccCCCCCcEEEecCCCchhhhhHHHH-HhC--------CCEEEEcCCCCCCCCCCceeeccCC
Q 023678 96 ---EDSFDGVDIALFSAGGSISKKFGPIA-VEK--------GSIVVDNSSAFRMVENVPLVIPEVN 149 (279)
Q Consensus 96 ---~~~~~~~DvVf~a~g~~~s~~~~~~~-~~a--------G~~VIDlS~~~R~~~~vplvvPevN 149 (279)
.+-+.+.|+|+.|++.-.++.+..+. .+. +..+||.+.. -+...+..++|+.-
T Consensus 80 ~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~-G~~G~v~vi~P~~t 144 (291)
T cd01488 80 DKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTE-GFKGHARVILPGIT 144 (291)
T ss_pred chhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEc-ccEEEEEEEcCCCC
Confidence 22357899999999998888887764 333 4678876442 22323445667653
No 354
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.31 E-value=0.26 Score=49.11 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=25.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+|||+|+| .||+|..+.-.|+++++ .+++..+
T Consensus 1 ~m~I~ViG-~GyvGl~~A~~lA~~g~-g~~V~gv 32 (473)
T PLN02353 1 MVKICCIG-AGYVGGPTMAVIALKCP-DIEVVVV 32 (473)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhcCC-CCeEEEE
Confidence 47999999 79999999999998742 3455545
No 355
>PRK07578 short chain dehydrogenase; Provisional
Probab=91.28 E-value=0.49 Score=40.32 Aligned_cols=23 Identities=30% Similarity=0.655 Sum_probs=20.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDR 62 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~ 62 (279)
|++.|.||+|.+|+++.+.|.++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~ 23 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR 23 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc
Confidence 47999999999999999999875
No 356
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=91.25 E-value=0.81 Score=43.74 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=47.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh----
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS---- 114 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s---- 114 (279)
..+|.|||| |-+|+..++.|.+++. .++ .++.|... ...+.+. .... ..-+..+|+||+|++.+.+
T Consensus 174 ~k~vLvIGa-Gem~~l~a~~L~~~g~--~~i-~v~nRt~~--~~~~~~~--~~~~--~~~~~~~DvVIs~t~~Tas~~p~ 243 (338)
T PRK00676 174 KASLLFIGY-SEINRKVAYYLQRQGY--SRI-TFCSRQQL--TLPYRTV--VREE--LSFQDPYDVIFFGSSESAYAFPH 243 (338)
T ss_pred CCEEEEEcc-cHHHHHHHHHHHHcCC--CEE-EEEcCCcc--ccchhhh--hhhh--hhcccCCCEEEEcCCcCCCCCce
Confidence 479999995 9999999999998843 333 34444331 1111110 0000 0113578999998542222
Q ss_pred --hhhHHHHHhCCCEEEEcCCCC
Q 023678 115 --KKFGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 115 --~~~~~~~~~aG~~VIDlS~~~ 135 (279)
.+..... ..-.+||++=+-
T Consensus 244 i~~~~~~~~--~~r~~iDLAvPR 264 (338)
T PRK00676 244 LSWESLADI--PDRIVFDFNVPR 264 (338)
T ss_pred eeHHHHhhc--cCcEEEEecCCC
Confidence 2222221 113689998763
No 357
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=91.20 E-value=0.4 Score=42.68 Aligned_cols=26 Identities=15% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||+|.+|+++.+.|.++++
T Consensus 9 ~k~vlItG~s~gIG~~la~~l~~~G~ 34 (266)
T PRK06171 9 GKIIIVTGGSSGIGLAIVKELLANGA 34 (266)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC
Confidence 45899999999999999999998754
No 358
>PRK06436 glycerate dehydrogenase; Provisional
Probab=91.19 E-value=0.55 Score=44.10 Aligned_cols=84 Identities=15% Similarity=0.139 Sum_probs=50.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh-h
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK-F 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~-~ 117 (279)
..+|+|+| .|.+|+++.++|..- ..++..+ +++... . +......++ .+.+..+|+|++++|.+...+ .
T Consensus 122 gktvgIiG-~G~IG~~vA~~l~af---G~~V~~~-~r~~~~----~-~~~~~~~~l-~ell~~aDiv~~~lp~t~~T~~l 190 (303)
T PRK06436 122 NKSLGILG-YGGIGRRVALLAKAF---GMNIYAY-TRSYVN----D-GISSIYMEP-EDIMKKSDFVLISLPLTDETRGM 190 (303)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHC---CCEEEEE-CCCCcc----c-CcccccCCH-HHHHhhCCEEEECCCCCchhhcC
Confidence 47999999 899999999988643 3355554 332111 0 100001121 123568999999998654322 2
Q ss_pred H----HHHHhCCCEEEEcCC
Q 023678 118 G----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+|+.|-
T Consensus 191 i~~~~l~~mk~ga~lIN~sR 210 (303)
T PRK06436 191 INSKMLSLFRKGLAIINVAR 210 (303)
T ss_pred cCHHHHhcCCCCeEEEECCC
Confidence 1 122467889997764
No 359
>PRK08309 short chain dehydrogenase; Provisional
Probab=91.13 E-value=0.75 Score=39.67 Aligned_cols=83 Identities=14% Similarity=0.215 Sum_probs=48.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee--eC-CceeEEe--ecC-c-----------cCCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS--FQ-DKAYTVE--ELT-E-----------DSFDG 101 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~--~~-~~~~~v~--~~d-~-----------~~~~~ 101 (279)
|++.|.|+||++|. +.+.|.++++ ++..+ +++... ..+. .. ...+... |+. . ..+..
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~---~V~v~-~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~ 75 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGF---HVSVI-ARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGP 75 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcC---EEEEE-ECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 47999999999876 8988988744 44444 343211 1110 00 1112211 221 0 11346
Q ss_pred CcEEEecCCCchhhhhHHHHHhCCCE
Q 023678 102 VDIALFSAGGSISKKFGPIAVEKGSI 127 (279)
Q Consensus 102 ~DvVf~a~g~~~s~~~~~~~~~aG~~ 127 (279)
.|++|...-....+.++..+.+.|..
T Consensus 76 id~lv~~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 76 FDLAVAWIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred CeEEEEeccccchhhHHHHHHHHccC
Confidence 78999888777777777777777765
No 360
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.12 E-value=0.45 Score=44.61 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=62.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISK 115 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~ 115 (279)
+..+|.|+|.+..||+=|..+|.++. .....+....+.. .+ .+....+|+|+.|+|.. .
T Consensus 158 ~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-----------------~~l~~~~~~ADIvI~Avg~~--~ 218 (295)
T PRK14174 158 KGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-----------------KDIPSYTRQADILIAAIGKA--R 218 (295)
T ss_pred CCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-----------------hhHHHHHHhCCEEEEecCcc--C
Confidence 35799999999999999999987620 0012222221110 01 12346899999999765 3
Q ss_pred hhHHHHHhCCCEEEEcCCCCCCCC---CCceeeccCCHHhhhc
Q 023678 116 KFGPIAVEKGSIVVDNSSAFRMVE---NVPLVIPEVNPEAMSG 155 (279)
Q Consensus 116 ~~~~~~~~aG~~VIDlS~~~R~~~---~vplvvPevN~~~i~~ 155 (279)
-+-+...+.|+.|||.+-++-.++ ...-.+-.|+.+..+.
T Consensus 219 li~~~~vk~GavVIDVgi~~~~~~~~~~g~kl~GDVd~~~v~~ 261 (295)
T PRK14174 219 FITADMVKPGAVVIDVGINRIEDPSTKSGYRLVGDVDYEGVSA 261 (295)
T ss_pred ccCHHHcCCCCEEEEeeccccccccccCCCceECCcCHHHHHh
Confidence 355566789999999987762121 0113566677666653
No 361
>PRK07814 short chain dehydrogenase; Provisional
Probab=91.12 E-value=0.35 Score=43.21 Aligned_cols=31 Identities=10% Similarity=0.206 Sum_probs=25.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~G~---~Vi~~ 40 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEAGA---DVLIA 40 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998743 55555
No 362
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.10 E-value=0.58 Score=43.69 Aligned_cols=92 Identities=18% Similarity=0.253 Sum_probs=60.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|+|...- +-
T Consensus 157 Gk~vvVvGrS~iVGkPla~lL~~~---~atVtichs~T---~------------~l-~~~~~~ADIvI~AvG~~~~--i~ 215 (284)
T PRK14170 157 GKRAVVIGRSNIVGKPVAQLLLNE---NATVTIAHSRT---K------------DL-PQVAKEADILVVATGLAKF--VK 215 (284)
T ss_pred CCEEEEECCCCcchHHHHHHHHHC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEecCCcCc--cC
Confidence 579999999999999999999876 23433333211 0 00 1224678999999986532 34
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ .+++ -++-.++.+...
T Consensus 216 ~~~vk~GavVIDvGin~-~~~g--kl~GDvdfe~~~ 248 (284)
T PRK14170 216 KDYIKPGAIVIDVGMDR-DENN--KLCGDVDFDDVV 248 (284)
T ss_pred HHHcCCCCEEEEccCcc-cCCC--CeecccchHHHH
Confidence 56678999999988765 2222 245667766554
No 363
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.06 E-value=0.46 Score=42.52 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=26.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+..++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~---~V~~~ 37 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA---AVMIV 37 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC---eEEEE
Confidence 4457899999999999999999998754 45444
No 364
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=91.04 E-value=0.46 Score=45.79 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=58.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCCCCce---eee----CC-----ceeEEeecC-ccC----CC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRSAGKQ---LSF----QD-----KAYTVEELT-EDS----FD 100 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s~G~~---~~~----~~-----~~~~v~~~d-~~~----~~ 100 (279)
.+.+.|.||||++|.-+++.+.... ++...+ +++.| +..+. +.. .+ ..+.+.|.+ ++. ..
T Consensus 5 ~yDvVIyGASGfTG~yivee~v~~~~~~~~sl-avAGR-n~~KL~~vL~~~~~k~~~~ls~~~i~i~D~~n~~Sl~emak 82 (423)
T KOG2733|consen 5 RYDVVIYGASGFTGKYIVEEAVSSQVFEGLSL-AVAGR-NEKKLQEVLEKVGEKTGTDLSSSVILIADSANEASLDEMAK 82 (423)
T ss_pred eeeEEEEccccccceeeHHHHhhhhcccCceE-EEecC-CHHHHHHHHHHHhhccCCCcccceEEEecCCCHHHHHHHHh
Confidence 3789999999999999999987632 344443 33343 22221 100 11 113333432 222 35
Q ss_pred CCcEEEecCCCch--hhhhHHHHHhCCCEEEEcCCC
Q 023678 101 GVDIALFSAGGSI--SKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 101 ~~DvVf~a~g~~~--s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.+-+++-|+|... ....+..+.+.|+.-||.|+.
T Consensus 83 ~~~vivN~vGPyR~hGE~VVkacienG~~~vDISGE 118 (423)
T KOG2733|consen 83 QARVIVNCVGPYRFHGEPVVKACIENGTHHVDISGE 118 (423)
T ss_pred hhEEEEeccccceecCcHHHHHHHHcCCceeccCCC
Confidence 7899999998753 245666678899988899884
No 365
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.04 E-value=0.84 Score=44.93 Aligned_cols=86 Identities=15% Similarity=0.137 Sum_probs=53.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-c----eeeeCCceeEEeecCccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-K----QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~----~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
..+|.|+|+ |.+|.++.+.|.++++ ++..+..+.... . .+...+..+.... ......++|+|+.+.|..-
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~G~---~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~-~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLELGA---RVTVVDDGDDERHRALAAILEALGATVRLGP-GPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCC---EEEEEeCCchhhhHHHHHHHHHcCCEEEECC-CccccCCCCEEEECCCcCC
Confidence 358999995 9999999999988754 444442221111 1 1111121221111 1122346899999998877
Q ss_pred hhhhHHHHHhCCCEEE
Q 023678 114 SKKFGPIAVEKGSIVV 129 (279)
Q Consensus 114 s~~~~~~~~~aG~~VI 129 (279)
....+..+.+.|+.|+
T Consensus 91 ~~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 91 DAPLLAAAADAGIPVW 106 (480)
T ss_pred CCHHHHHHHHCCCeec
Confidence 7777888889999987
No 366
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.03 E-value=0.38 Score=41.84 Aligned_cols=26 Identities=12% Similarity=0.234 Sum_probs=22.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.+++.|.||+|.+|+.+.+.|.++++
T Consensus 5 ~k~~lVtGas~~iG~~ia~~l~~~G~ 30 (235)
T PRK06550 5 TKTVLITGAASGIGLAQARAFLAQGA 30 (235)
T ss_pred CCEEEEcCCCchHHHHHHHHHHHCCC
Confidence 35899999999999999999998754
No 367
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=91.02 E-value=0.32 Score=44.85 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=23.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.++|.|.||+|++|+.|++.|.++++
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~ 30 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY 30 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
No 368
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=91.01 E-value=0.46 Score=47.35 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=47.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecC-ccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELT-EDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d-~~~~~~~DvVf~a~g~~~s~~ 116 (279)
.++++|+|+ |-+|+.+...|.+.++ ++... +|+.. .+.+.... .......+ ...+.++|+|+.|+|.+..-
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~G~---~V~i~-~R~~~~~~~la~~~-~~~~~~~~~~~~l~~~DiVInatP~g~~~- 404 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARAGA---ELLIF-NRTKAHAEALASRC-QGKAFPLESLPELHRIDIIINCLPPSVTI- 404 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHCCC---EEEEE-eCCHHHHHHHHHHh-ccceechhHhcccCCCCEEEEcCCCCCcc-
Confidence 468999995 8999999999988743 54443 33211 11111000 00111111 12356789999999987532
Q ss_pred hHHHHHhCCCEEEEcCC
Q 023678 117 FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~ 133 (279)
.. ... ..|+|+.-
T Consensus 405 -~~-~l~--~~v~D~~Y 417 (477)
T PRK09310 405 -PK-AFP--PCVVDINT 417 (477)
T ss_pred -hh-HHh--hhEEeccC
Confidence 12 222 26788754
No 369
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.98 E-value=1.3 Score=41.48 Aligned_cols=95 Identities=19% Similarity=0.241 Sum_probs=60.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.++ ...+....|+. + ++ .+....+|+|+.|.|...- +-
T Consensus 160 Gk~vvViGrS~iVGkPla~lL~~~---~aTVt~chs~T---~------------~l-~~~~~~ADIvVsAvGkp~~--i~ 218 (294)
T PRK14187 160 GSDAVVIGRSNIVGKPMACLLLGE---NCTVTTVHSAT---R------------DL-ADYCSKADILVAAVGIPNF--VK 218 (294)
T ss_pred CCEEEEECCCccchHHHHHHHhhC---CCEEEEeCCCC---C------------CH-HHHHhhCCEEEEccCCcCc--cC
Confidence 579999999999999999999876 23433333211 0 00 1224679999999986532 33
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCC-ceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENV-PLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~v-plvvPevN~~~i~~ 155 (279)
....+.|+.|||..-.+ .+++. .-++-.++.+.+..
T Consensus 219 ~~~ik~gaiVIDVGin~-~~~~~~~kl~GDvd~e~v~~ 255 (294)
T PRK14187 219 YSWIKKGAIVIDVGINS-IEEGGVKKFVGDVDFAEVKK 255 (294)
T ss_pred HHHcCCCCEEEEecccc-cCCCCccceeCCccHHHHhh
Confidence 45567899999986554 22220 02456667665553
No 370
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=90.98 E-value=0.36 Score=51.29 Aligned_cols=90 Identities=17% Similarity=0.093 Sum_probs=54.0
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCC------CCceEEEEEeecCCCCceeeeCCcee---------EEeecCcc----C
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRD------FPYRSIKMLASKRSAGKQLSFQDKAY---------TVEELTED----S 98 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~------~p~~~l~~l~s~~s~G~~~~~~~~~~---------~v~~~d~~----~ 98 (279)
+.++|+|+| .|-||+.++++|.++. .-.++++.+..++. ..+...+-+. ...+.+.+ .
T Consensus 464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 540 (819)
T PRK09436 464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRK--MLLDEHGIDLDNWREELAEAGEPFDLDRLIRL 540 (819)
T ss_pred ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCc--cccCCCCCCHHHHHHHHhhccCCCCHHHHHHH
Confidence 468999999 8999999999986541 01345555543221 1111111000 00111110 0
Q ss_pred CC----CCcEEEecCCCchhhhhHHHHHhCCCEEEE
Q 023678 99 FD----GVDIALFSAGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 99 ~~----~~DvVf~a~g~~~s~~~~~~~~~aG~~VID 130 (279)
.. ..|+++.|++......+..+++++|+.||-
T Consensus 541 ~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVt 576 (819)
T PRK09436 541 VKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVT 576 (819)
T ss_pred HhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEc
Confidence 11 359999999987666667799999999993
No 371
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.98 E-value=0.64 Score=43.43 Aligned_cols=92 Identities=17% Similarity=0.206 Sum_probs=58.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+-|..+|.+++ ..+....++. + ++ .+....+|++|.|.|... -+-
T Consensus 159 Gk~vvViGrs~iVG~Pla~lL~~~~---atVtv~hs~T---~------------~l-~~~~~~ADIvi~avG~p~--~v~ 217 (285)
T PRK10792 159 GLNAVVVGASNIVGRPMSLELLLAG---CTVTVCHRFT---K------------NL-RHHVRNADLLVVAVGKPG--FIP 217 (285)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC---CeEEEEECCC---C------------CH-HHHHhhCCEEEEcCCCcc--ccc
Confidence 5799999999999999999998753 3443343221 0 11 123467899999996543 234
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ .+++ -.+-.++.+..+
T Consensus 218 ~~~vk~gavVIDvGin~-~~~g--k~~GDvd~~~~~ 250 (285)
T PRK10792 218 GEWIKPGAIVIDVGINR-LEDG--KLVGDVEFETAA 250 (285)
T ss_pred HHHcCCCcEEEEccccc-ccCC--CcCCCcCHHHHH
Confidence 46678999999987544 2111 133456655554
No 372
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.97 E-value=0.47 Score=44.39 Aligned_cols=92 Identities=23% Similarity=0.318 Sum_probs=59.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+=|..+|.+++ ..+....|+. +.+ .+....+|+|+.|.|.. .-+-
T Consensus 159 GK~vvViGrS~iVGkPla~lL~~~~---ATVtichs~T---~~L-------------~~~~~~ADIvV~AvGkp--~~i~ 217 (288)
T PRK14171 159 GKNVVIIGRSNIVGKPLSALLLKEN---CSVTICHSKT---HNL-------------SSITSKADIVVAAIGSP--LKLT 217 (288)
T ss_pred CCEEEEECCCCcchHHHHHHHHHCC---CEEEEeCCCC---CCH-------------HHHHhhCCEEEEccCCC--CccC
Confidence 5799999999999999999998762 3433332211 100 11236789999999854 3344
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ .+++ . .+-.|+.+..+
T Consensus 218 ~~~vk~GavVIDvGin~-~~~g-k-l~GDVd~~~v~ 250 (288)
T PRK14171 218 AEYFNPESIVIDVGINR-ISGN-K-IIGDVDFENVK 250 (288)
T ss_pred HHHcCCCCEEEEeeccc-cCCC-C-eECCccHHHHH
Confidence 56678999999987543 2221 1 34556656555
No 373
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=90.95 E-value=0.95 Score=42.50 Aligned_cols=79 Identities=14% Similarity=0.253 Sum_probs=49.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC------CCceeeeCCc--eeEE-eecCccCCCCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS------AGKQLSFQDK--AYTV-EELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s------~G~~~~~~~~--~~~v-~~~d~~~~~~~DvVf~a~g 110 (279)
|||+|+| +|.+|.-+.-.|.+.+ . .+..+...+. .|-.+..... .... ...+.+.+..+|+||.++-
T Consensus 1 mkI~IlG-aGAvG~l~g~~L~~~g-~--~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK 76 (307)
T COG1893 1 MKILILG-AGAIGSLLGARLAKAG-H--DVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK 76 (307)
T ss_pred CeEEEEC-CcHHHHHHHHHHHhCC-C--eEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence 6899999 6999999999999874 2 3333432221 2333332211 1111 1122344568999999999
Q ss_pred CchhhhhHHHHH
Q 023678 111 GSISKKFGPIAV 122 (279)
Q Consensus 111 ~~~s~~~~~~~~ 122 (279)
+....+.++.+.
T Consensus 77 a~q~~~al~~l~ 88 (307)
T COG1893 77 AYQLEEALPSLA 88 (307)
T ss_pred cccHHHHHHHhh
Confidence 888877776664
No 374
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=90.93 E-value=0.24 Score=46.15 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=26.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++|.|.||||++|++|++.|.++++ +++.+.
T Consensus 6 ~~~vlVTGatGfiG~~l~~~L~~~G~---~V~~~~ 37 (340)
T PLN02653 6 RKVALITGITGQDGSYLTEFLLSKGY---EVHGII 37 (340)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCC---EEEEEe
Confidence 46899999999999999999998753 555553
No 375
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.77 E-value=0.66 Score=41.48 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=26.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
+..+|.|.||+|.+|+++.+.|.++ ...+++++.
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~--gg~~V~~~~ 40 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKN--APARVVLAA 40 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhc--CCCeEEEEe
Confidence 3468999999999999999999887 334555553
No 376
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=90.73 E-value=1.3 Score=44.69 Aligned_cols=204 Identities=11% Similarity=0.141 Sum_probs=97.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCCCCCcEEEecCCCchh-hh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSFDGVDIALFSAGGSIS-KK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~~~~DvVf~a~g~~~s-~~ 116 (279)
..+|+|+| .|.+|+.+.+.|..-+ .++.++ ++.......... ..... ++ .+.+..+|+|++++|-+.. +.
T Consensus 138 gktvgIiG-~G~IG~~vA~~l~~fG---~~V~~~-d~~~~~~~~~~~--g~~~~~~l-~ell~~aDvV~l~lPlt~~T~~ 209 (525)
T TIGR01327 138 GKTLGVIG-LGRIGSIVAKRAKAFG---MKVLAY-DPYISPERAEQL--GVELVDDL-DELLARADFITVHTPLTPETRG 209 (525)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEE-CCCCChhHHHhc--CCEEcCCH-HHHHhhCCEEEEccCCChhhcc
Confidence 47899999 8999999999997543 355544 322111110000 11111 11 2335789999999996532 22
Q ss_pred hH--HH--HHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc-cccCCCCCcEEECCCChHHHHH-HhhhchhhhcCcc
Q 023678 117 FG--PI--AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG-IKVGMGKGALIANPNCSTIICL-MAATPLHRRAKVT 190 (279)
Q Consensus 117 ~~--~~--~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~-~~~~~~~~~iVanPgC~tt~l~-laL~PL~~~~~i~ 190 (279)
+. .. ..+.|+.+|+.+-.-- |+.+++.. ++. .. |+..+-=+.--= +.-.||.+ ..
T Consensus 210 li~~~~l~~mk~ga~lIN~aRG~~-----------vde~aL~~aL~~----g~-i~gAaLDVf~~EP~~~~pL~~---~~ 270 (525)
T TIGR01327 210 LIGAEELAKMKKGVIIVNCARGGI-----------IDEAALYEALEE----GH-VRAAALDVFEKEPPTDNPLFD---LD 270 (525)
T ss_pred CcCHHHHhcCCCCeEEEEcCCCce-----------eCHHHHHHHHHc----CC-eeEEEEecCCCCCCCCChhhc---CC
Confidence 22 12 2467889997764321 23333321 211 11 111100000000 00135543 34
Q ss_pred EEEEEEeec-ccccC-hhhHHHHHHHHHHHhcCCCCCccccccccccccccCCCCcccCCChHHHHhHHHHHHHhcCCCC
Q 023678 191 RMVVSTYQA-ASGAG-AAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFK 268 (279)
Q Consensus 191 ~v~vtt~q~-vSGaG-~~~~~El~~qt~~l~~g~~~~~~~f~~~iafN~iP~i~~~~~~g~t~eE~k~~~E~~kil~~~~ 268 (279)
.|++|-=.| .|--. ........+++..+++|+++...+-...+..+..+.++. |.+-=.|+-+=.+++++...
T Consensus 271 nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~~~~~~~~-----~~~la~riG~~a~ql~~~~~ 345 (525)
T TIGR01327 271 NVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDADVMEKLKP-----YLDLAEKLGKLAGQLLDGAV 345 (525)
T ss_pred CeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCchhhhhhhh-----HHHHHHHHHHHHHHHcCCCc
Confidence 555543222 12111 223455677788888887653322111122233333332 22233466666788888765
Q ss_pred ccEEee
Q 023678 269 MNFFVS 274 (279)
Q Consensus 269 ~~v~~~ 274 (279)
-+|.++
T Consensus 346 ~~v~i~ 351 (525)
T TIGR01327 346 QSVEVT 351 (525)
T ss_pred eEEEEE
Confidence 565554
No 377
>PRK06398 aldose dehydrogenase; Validated
Probab=90.70 E-value=0.65 Score=41.48 Aligned_cols=26 Identities=15% Similarity=0.279 Sum_probs=23.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.+++.|.||+|.+|+++.+.|.++|+
T Consensus 6 gk~vlItGas~gIG~~ia~~l~~~G~ 31 (258)
T PRK06398 6 DKVAIVTGGSQGIGKAVVNRLKEEGS 31 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
No 378
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=90.67 E-value=0.87 Score=40.74 Aligned_cols=84 Identities=15% Similarity=0.264 Sum_probs=48.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eee-CCceeEEee-cCc-----cCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSF-QDKAYTVEE-LTE-----DSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~-~~~~~~v~~-~d~-----~~~~~~DvVf~a~g~ 111 (279)
|++.|+|+ |.+|+.+.+.|.+.+|. ++++-..+..-.. ... ........+ .+. .-+.++|+++.+++.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~---Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~ 76 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHN---VVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN 76 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCc---eEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence 68999995 99999999999987653 4445322111011 110 011111112 221 124689999999999
Q ss_pred chhhhhHHHHH-h-CCCE
Q 023678 112 SISKKFGPIAV-E-KGSI 127 (279)
Q Consensus 112 ~~s~~~~~~~~-~-aG~~ 127 (279)
+...-.+-.++ + .|.+
T Consensus 77 d~~N~i~~~la~~~~gv~ 94 (225)
T COG0569 77 DEVNSVLALLALKEFGVP 94 (225)
T ss_pred CHHHHHHHHHHHHhcCCC
Confidence 76655554443 3 4663
No 379
>PRK12827 short chain dehydrogenase; Provisional
Probab=90.67 E-value=0.31 Score=42.52 Aligned_cols=26 Identities=19% Similarity=0.337 Sum_probs=23.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
.+++.|.||+|.+|+.+.+.|.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~g~ 31 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAADGA 31 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998854
No 380
>PRK05866 short chain dehydrogenase; Provisional
Probab=90.65 E-value=0.38 Score=44.19 Aligned_cols=31 Identities=10% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 40 ~k~vlItGasggIG~~la~~La~~G~---~Vi~~ 70 (293)
T PRK05866 40 GKRILLTGASSGIGEAAAEQFARRGA---TVVAV 70 (293)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 55444
No 381
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.60 E-value=0.77 Score=43.03 Aligned_cols=98 Identities=16% Similarity=0.267 Sum_probs=62.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|.|+|.+..||+=|..+|.+++.. ...+....|+. + ++ .+....+|+|+.|+|...- +
T Consensus 157 GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---~------------nl-~~~~~~ADIvIsAvGkp~~--i 218 (293)
T PRK14185 157 GKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS---K------------NL-KKECLEADIIIAALGQPEF--V 218 (293)
T ss_pred CCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC---C------------CH-HHHHhhCCEEEEccCCcCc--c
Confidence 579999999999999999999876311 22333332211 0 00 1123678999999986532 3
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCC----CceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~----vplvvPevN~~~i~~ 155 (279)
-....+.|+.|||.+-.+ .++. ..-.+-.|+.+.++.
T Consensus 219 ~~~~vk~gavVIDvGin~-~~~~~~~~g~klvGDVdf~~v~~ 259 (293)
T PRK14185 219 KADMVKEGAVVIDVGTTR-VPDATRKSGFKLTGDVKFDEVAP 259 (293)
T ss_pred CHHHcCCCCEEEEecCcc-cccccccCCCeeEcCCCHHHHHh
Confidence 345678999999987654 2220 113566777666653
No 382
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.50 E-value=0.64 Score=44.30 Aligned_cols=90 Identities=13% Similarity=0.115 Sum_probs=54.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC----------------CC--ceee--------eCCceeEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS----------------AG--KQLS--------FQDKAYTVE 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s----------------~G--~~~~--------~~~~~~~v~ 92 (279)
..+|.|+|+ |-+|..+++.|...|+. ++.++ .+.. .| ++-. .....+.+.
T Consensus 24 ~~~VlIiG~-GglGs~va~~La~aGvg--~i~lv-D~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~ 99 (338)
T PRK12475 24 EKHVLIVGA-GALGAANAEALVRAGIG--KLTIA-DRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV 99 (338)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC--EEEEE-cCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence 468999995 88999999999988543 33333 2211 11 1000 001122222
Q ss_pred ----ecCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 93 ----ELTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 93 ----~~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
+++. +.+.++|+||.|++...++.+...+ .+.|+++|..+
T Consensus 100 ~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~ 148 (338)
T PRK12475 100 PVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGG 148 (338)
T ss_pred EEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 2221 2247899999999998887766554 56788888543
No 383
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.46 E-value=0.84 Score=42.60 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=53.8
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
...+|.|+|.+..||+=|..+|.+++ ..+....|+. + ++ .+....+|+|+.|.|...- +
T Consensus 158 ~Gk~vvViGrS~iVGkPla~lL~~~~---atVt~chs~T---~------------~l-~~~~~~ADIvIsAvGk~~~--i 216 (284)
T PRK14177 158 TGKNAVVVGRSPILGKPMAMLLTEMN---ATVTLCHSKT---Q------------NL-PSIVRQADIIVGAVGKPEF--I 216 (284)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC---CEEEEeCCCC---C------------CH-HHHHhhCCEEEEeCCCcCc--c
Confidence 35799999999999999999998762 3433332211 1 00 1124678999999986532 3
Q ss_pred HHHHHhCCCEEEEcCCCCC
Q 023678 118 GPIAVEKGSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R 136 (279)
-....+.|+.|||.+-.+.
T Consensus 217 ~~~~ik~gavVIDvGin~~ 235 (284)
T PRK14177 217 KADWISEGAVLLDAGYNPG 235 (284)
T ss_pred CHHHcCCCCEEEEecCccc
Confidence 4556789999999887663
No 384
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=90.36 E-value=1.7 Score=43.04 Aligned_cols=106 Identities=18% Similarity=0.233 Sum_probs=62.6
Q ss_pred EEEEECcCcHHHHHHHHHHHcCCC---CceEEEEEee----cC-----------CCCceeee--------CCceeEEee-
Q 023678 41 SVAVVGVTGAVGQEFLSVLSDRDF---PYRSIKMLAS----KR-----------SAGKQLSF--------QDKAYTVEE- 93 (279)
Q Consensus 41 kVaIiGATG~VG~eLl~lL~~~~~---p~~~l~~l~s----~~-----------s~G~~~~~--------~~~~~~v~~- 93 (279)
||.||| .|-+|.++++.|...|. +..++.++-. .+ ..|+.-+. ....+.+..
T Consensus 1 kVlvVG-aGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~ 79 (435)
T cd01490 1 KVFLVG-AGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITAL 79 (435)
T ss_pred CEEEEC-CCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEE
Confidence 589999 59999999999988765 1134444421 11 12221110 011222221
Q ss_pred ---cC--------ccCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcCCCCCCCCCCceeeccC
Q 023678 94 ---LT--------EDSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMVENVPLVIPEV 148 (279)
Q Consensus 94 ---~d--------~~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS~~~R~~~~vplvvPev 148 (279)
++ .+-+.+.|+|+.|++.-.++.++.+. ...|...|+.. ...+.-.+..++|.+
T Consensus 80 ~~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~g-t~G~~G~v~v~iP~~ 145 (435)
T cd01490 80 QNRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESG-TLGTKGNTQVVIPHL 145 (435)
T ss_pred ecccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEe-cccceeEEEEEeCCC
Confidence 11 11246899999999998888777655 57888888743 344444455566654
No 385
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.33 E-value=0.81 Score=42.79 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=58.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|+|.+..||+-|..+|.+++ ..+....++. + ++ .+....+|+||.|.|... -+-
T Consensus 164 Gk~vvViGrs~iVGkPla~lL~~~~---atVtv~hs~T---~------------~l-~~~~~~ADIvv~AvG~p~--~i~ 222 (287)
T PRK14176 164 GKNAVIVGHSNVVGKPMAAMLLNRN---ATVSVCHVFT---D------------DL-KKYTLDADILVVATGVKH--LIK 222 (287)
T ss_pred CCEEEEECCCcccHHHHHHHHHHCC---CEEEEEeccC---C------------CH-HHHHhhCCEEEEccCCcc--ccC
Confidence 5799999999999999999998763 3433332211 0 10 122367899999987642 233
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+..+ .+ + . ++-.++.+..+
T Consensus 223 ~~~vk~gavVIDvGin~-~~-g-k-l~GDvd~~~~~ 254 (287)
T PRK14176 223 ADMVKEGAVIFDVGITK-EE-D-K-VYGDVDFENVI 254 (287)
T ss_pred HHHcCCCcEEEEecccc-cC-C-C-ccCCcCHHHHH
Confidence 45678899999998764 21 1 1 33456655554
No 386
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.22 E-value=0.83 Score=40.81 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=26.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s 74 (279)
+.++|+|.| .|.||+.+.+.|.+.+ .+++.++.
T Consensus 22 ~g~~vaIqG-fGnVG~~~a~~L~~~G---~~vV~vsD 54 (217)
T cd05211 22 EGLTVAVQG-LGNVGWGLAKKLAEEG---GKVLAVSD 54 (217)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcC---CEEEEEEc
Confidence 458999999 8999999999999863 45566643
No 387
>PRK06823 ornithine cyclodeaminase; Validated
Probab=90.19 E-value=0.85 Score=43.03 Aligned_cols=105 Identities=11% Similarity=0.181 Sum_probs=61.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee----CCceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF----QDKAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~----~~~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
+..+++|+| +|..++.-++.+..- +|.-++ .+.+|+.. +.-.+ ....+.+...+ .+...++|+|++||++
T Consensus 127 d~~~l~iiG-~G~qA~~~~~a~~~v-~~i~~v-~v~~r~~~-~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s 202 (315)
T PRK06823 127 HVSAIGIVG-TGIQARMQLMYLKNV-TDCRQL-WVWGRSET-ALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS 202 (315)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHhc-CCCCEE-EEECCCHH-HHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC
Confidence 346899999 799999999887653 354444 44454321 11111 10112232222 2345789999999986
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
..- -+-.+.++.|..|+-.+++.. ..-|+.++-++
T Consensus 203 ~~P-~~~~~~l~~G~hi~~iGs~~p-------~~~Eld~~~l~ 237 (315)
T PRK06823 203 REP-LLQAEDIQPGTHITAVGADSP-------GKQELDAELVA 237 (315)
T ss_pred CCc-eeCHHHcCCCcEEEecCCCCc-------ccccCCHHHHh
Confidence 632 222456789999876665432 13466666665
No 388
>PRK07023 short chain dehydrogenase; Provisional
Probab=90.18 E-value=0.36 Score=42.40 Aligned_cols=31 Identities=16% Similarity=0.215 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+++.|.||||.+|+.+.+.|.++++ +++.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~---~v~~~ 31 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGI---AVLGV 31 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCC---EEEEE
Confidence 46899999999999999999998754 44444
No 389
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=90.16 E-value=0.73 Score=41.90 Aligned_cols=70 Identities=20% Similarity=0.322 Sum_probs=41.5
Q ss_pred EEEECcCcHHHHHHHHHHHcCC-CCceEEEEEeecCC--CCceeee-----CCceeEEeec-C-ccCCCCCcEEEecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRD-FPYRSIKMLASKRS--AGKQLSF-----QDKAYTVEEL-T-EDSFDGVDIALFSAGG 111 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~-~p~~~l~~l~s~~s--~G~~~~~-----~~~~~~v~~~-d-~~~~~~~DvVf~a~g~ 111 (279)
|+|+||.|.+|..++..|...+ +...++.++...+. .+..... ......+... | .+++.++|+|+++.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 6899998999999999988763 12356666643221 1110000 0012233322 2 3567899999998764
No 390
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=90.16 E-value=0.37 Score=51.16 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=54.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC-------CCceEEEEEeecCCC-Cce--eeeCC-c-ee--EEeecCc----cC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD-------FPYRSIKMLASKRSA-GKQ--LSFQD-K-AY--TVEELTE----DS 98 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~-------~p~~~l~~l~s~~s~-G~~--~~~~~-~-~~--~v~~~d~----~~ 98 (279)
++.++|+|+| .|-||+.++++|.++. .-.++++.++.++.. -.+ +.... . .. ...+.+. +.
T Consensus 456 ~~~i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~e~ 534 (810)
T PRK09466 456 EKRIGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRALAFFDDEAVEWDEESLFLW 534 (810)
T ss_pred CceEEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHHHhhHHhhcCCccHHHHHHH
Confidence 3568999999 8999999999986541 123566666544321 010 00000 0 00 0000111 01
Q ss_pred CC----CCcEEEecCCCchhhhhHHHHHhCCCEEE
Q 023678 99 FD----GVDIALFSAGGSISKKFGPIAVEKGSIVV 129 (279)
Q Consensus 99 ~~----~~DvVf~a~g~~~s~~~~~~~~~aG~~VI 129 (279)
+. +.++++.|++......+...++++|+.||
T Consensus 535 i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VV 569 (810)
T PRK09466 535 LRAHPYDELVVLDVTASEQLALQYPDFASHGFHVI 569 (810)
T ss_pred HhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEE
Confidence 11 24699999998766666779999999999
No 391
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.15 E-value=0.72 Score=42.94 Aligned_cols=93 Identities=22% Similarity=0.343 Sum_probs=60.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..||+=|..+|.+++ ..+....|+ . +.+ .+....+|+|+.|.|...- +
T Consensus 157 ~Gk~vvViGrS~~VGkPla~lL~~~~---AtVt~chs~-T--~~l-------------~~~~~~ADIvIsAvGkp~~--i 215 (278)
T PRK14172 157 EGKEVVVIGRSNIVGKPVAQLLLNEN---ATVTICHSK-T--KNL-------------KEVCKKADILVVAIGRPKF--I 215 (278)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC---CEEEEeCCC-C--CCH-------------HHHHhhCCEEEEcCCCcCc--c
Confidence 35799999999999999999998762 343333221 1 100 1123578999999986532 4
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-+...+.|+.|||..-.+ .+ + -++-.++.+.+..
T Consensus 216 ~~~~ik~gavVIDvGin~-~~-g--kl~GDvd~~~v~~ 249 (278)
T PRK14172 216 DEEYVKEGAIVIDVGTSS-VN-G--KITGDVNFDKVID 249 (278)
T ss_pred CHHHcCCCcEEEEeeccc-cC-C--ceeeeccHHHHHh
Confidence 455678999999986554 22 2 2455677666553
No 392
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.01 E-value=0.37 Score=45.05 Aligned_cols=90 Identities=12% Similarity=0.265 Sum_probs=53.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--------Cceeee-CCc----eeEEeecCc-cCC-CCCcE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--------GKQLSF-QDK----AYTVEELTE-DSF-DGVDI 104 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--------G~~~~~-~~~----~~~v~~~d~-~~~-~~~Dv 104 (279)
|||+|+|| |.+|..+...|.+.+++ +.++ +|+.. +....+ .+. .+.+.. +. +.. .++|+
T Consensus 1 MkI~IiGa-Ga~G~ala~~L~~~g~~---V~l~-~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~Dl 74 (326)
T PRK14620 1 MKISILGA-GSFGTAIAIALSSKKIS---VNLW-GRNHTTFESINTKRKNLKYLPTCHLPDNISVKS-AIDEVLSDNATC 74 (326)
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCe---EEEE-ecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeC-CHHHHHhCCCCE
Confidence 47999995 99999999999887543 3333 44321 111110 010 111211 11 223 47899
Q ss_pred EEecCCCchhhhhHHHHHh----CCCEEEEcCCCC
Q 023678 105 ALFSAGGSISKKFGPIAVE----KGSIVVDNSSAF 135 (279)
Q Consensus 105 Vf~a~g~~~s~~~~~~~~~----aG~~VIDlS~~~ 135 (279)
+|+|+++....+.++++.. ....||-+..-+
T Consensus 75 iiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 75 IILAVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred EEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 9999999888887776654 344555455444
No 393
>PRK06181 short chain dehydrogenase; Provisional
Probab=89.93 E-value=0.59 Score=41.47 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=25.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.+|.|.||+|.+|+++++.|.++++ +++.+.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~---~Vi~~~ 32 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA---QLVLAA 32 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC---EEEEEe
Confidence 4799999999999999999988743 555553
No 394
>PRK14031 glutamate dehydrogenase; Provisional
Probab=89.92 E-value=2 Score=42.60 Aligned_cols=87 Identities=20% Similarity=0.205 Sum_probs=55.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeC------------------C--cee----EEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ------------------D--KAY----TVEE 93 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~------------------~--~~~----~v~~ 93 (279)
+..+|+|.| .|.||...++.|.+. ..++++++. +.|.-+... + ..+ ....
T Consensus 227 ~g~rVaVQG-fGNVG~~aA~~L~e~---GAkVVaVSD--~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~ 300 (444)
T PRK14031 227 KGKVCLVSG-SGNVAQYTAEKVLEL---GGKVVTMSD--SDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKY 300 (444)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHC---CCEEEEEEC--CCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEE
Confidence 357999999 699999999999875 456666643 222111000 0 000 0111
Q ss_pred cCccC-C-CCCcEEEec-CCCchhhhhHHHHHhCCCEEEE
Q 023678 94 LTEDS-F-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 94 ~d~~~-~-~~~DvVf~a-~g~~~s~~~~~~~~~aG~~VID 130 (279)
.+.++ | .+||+.|-| ++..+..+.++++...||++|-
T Consensus 301 i~~d~~~~~~cDIliPaAl~n~I~~~na~~l~a~g~~~V~ 340 (444)
T PRK14031 301 VEGARPWGEKGDIALPSATQNELNGDDARQLVANGVIAVS 340 (444)
T ss_pred cCCcccccCCCcEEeecccccccCHHHHHHHHhcCCeEEE
Confidence 12222 3 479998876 5667888999999889998774
No 395
>PRK07326 short chain dehydrogenase; Provisional
Probab=89.89 E-value=0.43 Score=41.47 Aligned_cols=31 Identities=10% Similarity=0.254 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|+||||.+|+.+++.|.++++ +++++
T Consensus 6 ~~~ilItGatg~iG~~la~~l~~~g~---~V~~~ 36 (237)
T PRK07326 6 GKVALITGGSKGIGFAIAEALLAEGY---KVAIT 36 (237)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC---EEEEe
Confidence 46899999999999999999998753 55555
No 396
>PRK07060 short chain dehydrogenase; Provisional
Probab=89.88 E-value=0.68 Score=40.37 Aligned_cols=32 Identities=25% Similarity=0.367 Sum_probs=26.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..++.|.||+|.+|+.+++.|.++++ +++.+
T Consensus 8 ~~~~~lItGa~g~iG~~~a~~l~~~g~---~V~~~ 39 (245)
T PRK07060 8 SGKSVLVTGASSGIGRACAVALAQRGA---RVVAA 39 (245)
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999998754 45544
No 397
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.80 E-value=0.73 Score=42.72 Aligned_cols=69 Identities=12% Similarity=0.147 Sum_probs=40.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeee----CCceeEEeecC--ccCCCCCcEEEecCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSF----QDKAYTVEELT--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~----~~~~~~v~~~d--~~~~~~~DvVf~a~g~ 111 (279)
.+|.|+|| |-+|+.++..|...+ ..++.++ .|. ..+ .+.. ......+...+ .+.+.++|+|+.|++.
T Consensus 128 k~vlIlGa-GGaaraia~aL~~~G--~~~I~I~-nR~-~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~ 202 (284)
T PRK12549 128 ERVVQLGA-GGAGAAVAHALLTLG--VERLTIF-DVD-PARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT 202 (284)
T ss_pred CEEEEECC-cHHHHHHHHHHHHcC--CCEEEEE-CCC-HHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence 58999995 779999999998774 3344444 332 221 1110 01112222222 1235678999999887
Q ss_pred ch
Q 023678 112 SI 113 (279)
Q Consensus 112 ~~ 113 (279)
+.
T Consensus 203 Gm 204 (284)
T PRK12549 203 GM 204 (284)
T ss_pred CC
Confidence 64
No 398
>PRK07454 short chain dehydrogenase; Provisional
Probab=89.77 E-value=0.7 Score=40.39 Aligned_cols=31 Identities=10% Similarity=0.408 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.++.|.|++|.+|+.+++.|.++++ +++.+
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~---~V~~~ 36 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW---DLALV 36 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998854 44444
No 399
>PRK08265 short chain dehydrogenase; Provisional
Probab=89.76 E-value=0.78 Score=40.98 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=23.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||||.+|+++.+.|.++++
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~ 31 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA 31 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
No 400
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.75 E-value=0.38 Score=42.17 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=23.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||+|.+|+++++.|.++++
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~g~ 29 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEEGY 29 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998853
No 401
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.71 E-value=0.86 Score=42.81 Aligned_cols=99 Identities=18% Similarity=0.219 Sum_probs=60.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCC-ceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFP-YRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p-~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
+..+|.|||.+..||+=|..+|.+++.- ...+....|+. + ++ .+....+|+|+.|.|..- -
T Consensus 156 ~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T---~------------~l-~~~~~~ADIvIsAvGkp~--~ 217 (297)
T PRK14167 156 EGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT---D------------DL-AAKTRRADIVVAAAGVPE--L 217 (297)
T ss_pred CCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC---C------------CH-HHHHhhCCEEEEccCCcC--c
Confidence 3579999999999999999999875100 22322222211 0 00 122467999999988642 3
Q ss_pred hHHHHHhCCCEEEEcCCCCCCCCC---CceeeccCCHHhhhc
Q 023678 117 FGPIAVEKGSIVVDNSSAFRMVEN---VPLVIPEVNPEAMSG 155 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~R~~~~---vplvvPevN~~~i~~ 155 (279)
+-....+.|+.|||.+-.+ .++. ..-.+-.|+.+.++.
T Consensus 218 i~~~~ik~gaiVIDvGin~-~~~~~~~g~kl~GDVd~e~v~~ 258 (297)
T PRK14167 218 IDGSMLSEGATVIDVGINR-VDADTEKGYELVGDVEFESAKE 258 (297)
T ss_pred cCHHHcCCCCEEEEccccc-cCcccccCCceeecCcHHHHHh
Confidence 3445678999999987554 2220 112456666665553
No 402
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=89.65 E-value=0.62 Score=41.15 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=24.9
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
|+|.|.||||.+|..+.+.|.++++ +++.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~---~V~~~ 30 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGH---KVIAT 30 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 5799999999999999999998754 44444
No 403
>PRK07340 ornithine cyclodeaminase; Validated
Probab=89.57 E-value=0.51 Score=44.14 Aligned_cols=103 Identities=18% Similarity=0.302 Sum_probs=59.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHc-CCCCceEEEEEeecCCCCceeee----CCceeEEeecCc-cCCCCCcEEEecCCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSF----QDKAYTVEELTE-DSFDGVDIALFSAGG 111 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~-~~~p~~~l~~l~s~~s~G~~~~~----~~~~~~v~~~d~-~~~~~~DvVf~a~g~ 111 (279)
+..+++|+| +|..|+..++.+.. + +..++ .+.+|.. .+...+ ......+.-.+. +...++|+|+.|+++
T Consensus 124 ~~~~v~IiG-aG~qa~~~~~al~~~~--~~~~v-~v~~r~~-~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s 198 (304)
T PRK07340 124 PPGDLLLIG-TGVQARAHLEAFAAGL--PVRRV-WVRGRTA-ASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTS 198 (304)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHhC--CCCEE-EEEcCCH-HHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCC
Confidence 347899999 69999999999864 4 44444 4444432 111111 001112221122 345789999999997
Q ss_pred chhhhhHHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhh
Q 023678 112 SISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMS 154 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~ 154 (279)
.. .+.....+.|+.|+-.+++.. ...|+.++.++
T Consensus 199 ~~--Pl~~~~~~~g~hi~~iGs~~p-------~~~El~~~~~~ 232 (304)
T PRK07340 199 RT--PVYPEAARAGRLVVAVGAFTP-------DMAELAPRTVR 232 (304)
T ss_pred CC--ceeCccCCCCCEEEecCCCCC-------CcccCCHHHHh
Confidence 64 233334578888876655431 13466666665
No 404
>PRK12367 short chain dehydrogenase; Provisional
Probab=89.56 E-value=1.3 Score=39.72 Aligned_cols=31 Identities=16% Similarity=0.410 Sum_probs=25.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 14 ~k~~lITGas~gIG~ala~~l~~~G~---~Vi~~ 44 (245)
T PRK12367 14 GKRIGITGASGALGKALTKAFRAKGA---KVIGL 44 (245)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC---EEEEE
Confidence 35899999999999999999988753 44444
No 405
>PRK06057 short chain dehydrogenase; Provisional
Probab=89.54 E-value=0.45 Score=42.17 Aligned_cols=33 Identities=9% Similarity=0.092 Sum_probs=26.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++..+|.|+||+|.+|..+.+.|.++++ +++.+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~---~v~~~ 37 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGA---TVVVG 37 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC---EEEEE
Confidence 3456899999999999999999998753 44444
No 406
>PRK08291 ectoine utilization protein EutC; Validated
Probab=89.54 E-value=0.58 Score=44.20 Aligned_cols=92 Identities=18% Similarity=0.177 Sum_probs=51.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-Cceeee--C-CceeEEeecC--ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSF--Q-DKAYTVEELT--EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~--~-~~~~~v~~~d--~~~~~~~DvVf~a~g~~ 112 (279)
..+++|+| +|..|+..+..+... .+..+ +.+.+|+.. .+.+.. . ...+.+...+ .+.+.++|+|+.|++..
T Consensus 132 ~~~v~IiG-aG~~a~~~~~al~~~-~~~~~-V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~ 208 (330)
T PRK08291 132 ASRAAVIG-AGEQARLQLEALTLV-RPIRE-VRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE 208 (330)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhc-CCCCE-EEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC
Confidence 46899999 588899888887642 13334 344444321 111110 0 0012222222 23356899999999875
Q ss_pred hhhhhH-HHHHhCCCEEEEcCCCC
Q 023678 113 ISKKFG-PIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 113 ~s~~~~-~~~~~aG~~VIDlS~~~ 135 (279)
. .+. ...++.|..|....++.
T Consensus 209 ~--p~i~~~~l~~g~~v~~vg~d~ 230 (330)
T PRK08291 209 E--PILKAEWLHPGLHVTAMGSDA 230 (330)
T ss_pred C--cEecHHHcCCCceEEeeCCCC
Confidence 3 333 33467898888776654
No 407
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.50 E-value=1.7 Score=40.51 Aligned_cols=94 Identities=20% Similarity=0.314 Sum_probs=60.7
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|.|+|.+..||+=|..+|.+++ ..+....|+ . + ++ .+....+|+|+.|+|...- +
T Consensus 156 ~Gk~vvViGrS~~VG~Pla~lL~~~~---AtVti~hs~-T--~------------~l-~~~~~~ADIvV~AvGkp~~--i 214 (281)
T PRK14183 156 KGKDVCVVGASNIVGKPMAALLLNAN---ATVDICHIF-T--K------------DL-KAHTKKADIVIVGVGKPNL--I 214 (281)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHCC---CEEEEeCCC-C--c------------CH-HHHHhhCCEEEEecCcccc--c
Confidence 35799999999999999999998763 333322211 0 1 01 1224678999999986532 4
Q ss_pred HHHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhc
Q 023678 118 GPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155 (279)
Q Consensus 118 ~~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~ 155 (279)
-....+.|+.|||.+-.+ .+++ -++-.|+.+....
T Consensus 215 ~~~~vk~gavvIDvGin~-~~~g--kl~GDVd~~~~~~ 249 (281)
T PRK14183 215 TEDMVKEGAIVIDIGINR-TEDG--RLVGDVDFENVAK 249 (281)
T ss_pred CHHHcCCCcEEEEeeccc-cCCC--CeECCccHHHHHh
Confidence 456678999999987654 2222 2556677666553
No 408
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.47 E-value=0.69 Score=44.52 Aligned_cols=90 Identities=17% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee-eCCceeEEeecC----ccCCCCCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS-FQDKAYTVEELT----EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~-~~~~~~~v~~~d----~~~~~~~DvVf~a~g~~ 112 (279)
..+|.|+|+ |-+|+..++.|...+. ++.++ +++..- ..+. ..+..+.....+ .+.+.++|+||.|++..
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lGa---~V~v~-d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~ 241 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLGA---TVTIL-DINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIP 241 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCCC---eEEEE-ECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccC
Confidence 468999995 9999999999987753 44444 332110 0010 001111111111 12246899999997321
Q ss_pred -------hhhhhHHHHHhCCCEEEEcCCC
Q 023678 113 -------ISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 113 -------~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
+.++.... .+.|..|||++.+
T Consensus 242 g~~~p~lit~~~l~~-mk~g~vIvDva~d 269 (370)
T TIGR00518 242 GAKAPKLVSNSLVAQ-MKPGAVIVDVAID 269 (370)
T ss_pred CCCCCcCcCHHHHhc-CCCCCEEEEEecC
Confidence 23444433 4678899998865
No 409
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=89.41 E-value=0.81 Score=43.82 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=60.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|||-+..||+=|.-+|.+++ ..+....|+. + ++ .+....+|+|+.|+|...- +-
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~---ATVTicHs~T---~------------nl-~~~~~~ADIvIsAvGkp~~--v~ 272 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHD---ATVSTVHAFT---K------------DP-EQITRKADIVIAAAGIPNL--VR 272 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC---CEEEEEcCCC---C------------CH-HHHHhhCCEEEEccCCcCc--cC
Confidence 5799999999999999999998762 3443343321 0 00 1224678999999986532 34
Q ss_pred HHHHhCCCEEEEcCCCCCCCCC----CceeeccCCHHhhh
Q 023678 119 PIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMS 154 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~----vplvvPevN~~~i~ 154 (279)
....+.|+.|||.+-.+ .++. ..-++-.|+.+...
T Consensus 273 ~d~vk~GavVIDVGin~-~~~~~~~~g~klvGDVdfe~v~ 311 (345)
T PLN02897 273 GSWLKPGAVVIDVGTTP-VEDSSCEFGYRLVGDVCYEEAL 311 (345)
T ss_pred HHHcCCCCEEEEccccc-cccccccCCCeeEecccHHHHH
Confidence 55678999999987654 3221 11355666655554
No 410
>PRK06172 short chain dehydrogenase; Provisional
Probab=89.39 E-value=0.78 Score=40.43 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..+|.|.||+|.+|+++++.|.++++ +++.+
T Consensus 6 ~~k~ilItGas~~iG~~ia~~l~~~G~---~v~~~ 37 (253)
T PRK06172 6 SGKVALVTGGAAGIGRATALAFAREGA---KVVVA 37 (253)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC---EEEEE
Confidence 357899999999999999999998753 55555
No 411
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=89.37 E-value=3.7 Score=38.24 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=45.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC--------CCCceeeeCCceeEEe--ecCccCCCCCcEEEecC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR--------SAGKQLSFQDKAYTVE--ELTEDSFDGVDIALFSA 109 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~--------s~G~~~~~~~~~~~v~--~~d~~~~~~~DvVf~a~ 109 (279)
|||+|+| .|.+|.-+.-.|.+.++ ++.+++... .-|-.+...+....+. ..+.+....+|+||.|+
T Consensus 3 m~I~IiG-aGaiG~~~a~~L~~~G~---~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~v 78 (305)
T PRK05708 3 MTWHILG-AGSLGSLWACRLARAGL---PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLAC 78 (305)
T ss_pred ceEEEEC-CCHHHHHHHHHHHhCCC---CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEEC
Confidence 6899999 59999999999987754 344454321 1122222112111111 11122335789999998
Q ss_pred CCchhhhhHHHH
Q 023678 110 GGSISKKFGPIA 121 (279)
Q Consensus 110 g~~~s~~~~~~~ 121 (279)
-+....+..+.+
T Consensus 79 K~~~~~~al~~l 90 (305)
T PRK05708 79 KAYDAEPAVASL 90 (305)
T ss_pred CHHhHHHHHHHH
Confidence 877665555544
No 412
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=89.37 E-value=1.1 Score=44.93 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=53.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCce---e-------eeCCc-----------eeEEeecCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQ---L-------SFQDK-----------AYTVEELTE 96 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~---~-------~~~~~-----------~~~v~~~d~ 96 (279)
..||+|||+ |..|..+...|..+||+ +.+...... ..+. + ...+. .+... .+.
T Consensus 7 i~~V~VIGa-G~MG~gIA~~la~aG~~---V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~-~~~ 81 (507)
T PRK08268 7 IATVAVIGA-GAMGAGIAQVAAQAGHT---VLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPV-EAL 81 (507)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCe---EEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH
Confidence 468999995 99999999999887654 444421111 0010 0 00110 12222 123
Q ss_pred cCCCCCcEEEecCCCchhhhh-----HHHHHhCCCEEEEcCCCCCC
Q 023678 97 DSFDGVDIALFSAGGSISKKF-----GPIAVEKGSIVVDNSSAFRM 137 (279)
Q Consensus 97 ~~~~~~DvVf~a~g~~~s~~~-----~~~~~~aG~~VIDlS~~~R~ 137 (279)
+++.++|+||.|++.+...+. +..+...++.+..++|....
T Consensus 82 ~~~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i 127 (507)
T PRK08268 82 ADLADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI 127 (507)
T ss_pred HHhCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH
Confidence 446799999999988755322 22333466676566776643
No 413
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=89.36 E-value=0.8 Score=39.84 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=23.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..++.|.||||.+|+++++.|.++++
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~g~ 31 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQGA 31 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998753
No 414
>PRK06953 short chain dehydrogenase; Provisional
Probab=89.35 E-value=0.42 Score=41.50 Aligned_cols=30 Identities=20% Similarity=0.398 Sum_probs=24.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++.|.||+|.+|+.+.+.|.+++ .+++.+
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G---~~v~~~ 31 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADG---WRVIAT 31 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCC---CEEEEE
Confidence 478999999999999999998764 355554
No 415
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=89.32 E-value=3.5 Score=36.55 Aligned_cols=92 Identities=18% Similarity=0.295 Sum_probs=53.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee----cCC----------CCceeee--------CCceeEEe----
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRS----------AGKQLSF--------QDKAYTVE---- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s----~~s----------~G~~~~~--------~~~~~~v~---- 92 (279)
..+|+|+|+ |-+|.++++.|...|.. ++.++.. ... .|++-.. ....+.+.
T Consensus 28 ~~~V~ViG~-GglGs~ia~~La~~Gvg--~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~ 104 (212)
T PRK08644 28 KAKVGIAGA-GGLGSNIAVALARSGVG--NLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNE 104 (212)
T ss_pred CCCEEEECc-CHHHHHHHHHHHHcCCC--eEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEee
Confidence 468999995 99999999999988554 3333311 111 1211000 01112222
Q ss_pred ecCc----cCCCCCcEEEecCCCchhhh-hHHHHHhC-CCEEEEcCC
Q 023678 93 ELTE----DSFDGVDIALFSAGGSISKK-FGPIAVEK-GSIVVDNSS 133 (279)
Q Consensus 93 ~~d~----~~~~~~DvVf~a~g~~~s~~-~~~~~~~a-G~~VIDlS~ 133 (279)
.++. +.+.++|+||.|++...++. +...+.+. +..+|..++
T Consensus 105 ~i~~~~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 105 KIDEDNIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred ecCHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeeh
Confidence 1221 23568999999988877755 34555666 888775443
No 416
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=89.31 E-value=0.34 Score=47.38 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=26.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
++++|.|.||+|.+|+++.+.|.++++ +++.+.
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~---~Vi~l~ 209 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGA---KVVALT 209 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC---EEEEEe
Confidence 357899999999999999999988753 555553
No 417
>PRK06198 short chain dehydrogenase; Provisional
Probab=89.29 E-value=0.76 Score=40.59 Aligned_cols=26 Identities=19% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..+|.|.||+|.+|+.+.+.|.+++.
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~G~ 31 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAERGA 31 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC
Confidence 46899999999999999999998743
No 418
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.10 E-value=0.46 Score=41.52 Aligned_cols=31 Identities=10% Similarity=0.232 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|+||||.+|+++++.|.++++ +++.+
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~G~---~V~~~ 35 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAEGA---RVVVT 35 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 44444
No 419
>PLN02996 fatty acyl-CoA reductase
Probab=89.10 E-value=0.72 Score=46.00 Aligned_cols=35 Identities=17% Similarity=0.291 Sum_probs=26.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++|.|-||||++|+.|++.|.+.+....++.++.
T Consensus 11 ~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~Lv 45 (491)
T PLN02996 11 NKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLL 45 (491)
T ss_pred CCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEE
Confidence 46899999999999999999876432334666665
No 420
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=89.06 E-value=1.7 Score=41.86 Aligned_cols=91 Identities=16% Similarity=0.206 Sum_probs=55.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec---------------CCCCceeee--------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGKQLSF--------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~---------------~s~G~~~~~--------~~~~~~v~~-- 93 (279)
..||.|+|+ |-+|.++++.|...|.. ++.++... +..|+.-.. ....+.+..
T Consensus 135 ~~~VlvvG~-GG~Gs~ia~~La~~Gvg--~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~ 211 (376)
T PRK08762 135 EARVLLIGA-GGLGSPAALYLAAAGVG--TLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ 211 (376)
T ss_pred cCcEEEECC-CHHHHHHHHHHHHcCCC--eEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 468999995 88999999999988543 44444211 112221110 011222221
Q ss_pred --cCc----cCCCCCcEEEecCCCchhhhhHHH-HHhCCCEEEEcC
Q 023678 94 --LTE----DSFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNS 132 (279)
Q Consensus 94 --~d~----~~~~~~DvVf~a~g~~~s~~~~~~-~~~aG~~VIDlS 132 (279)
++. +.+.++|+|+.|++...++.+..+ +.+.|+.+|..+
T Consensus 212 ~~~~~~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 212 ERVTSDNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred ccCChHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 124689999999999877766554 567899888653
No 421
>PRK07877 hypothetical protein; Provisional
Probab=89.05 E-value=1.3 Score=46.44 Aligned_cols=92 Identities=23% Similarity=0.268 Sum_probs=56.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe----ecCC----------CCceeee--------CCceeEEee---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKRS----------AGKQLSF--------QDKAYTVEE--- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~----s~~s----------~G~~~~~--------~~~~~~v~~--- 93 (279)
..||+|+|+ | +|..++..|...|. .-++.++- ..++ .|++-.. .+..+.|..
T Consensus 107 ~~~V~IvG~-G-lGs~~a~~LaraGv-vG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~ 183 (722)
T PRK07877 107 RLRIGVVGL-S-VGHAIAHTLAAEGL-CGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTD 183 (722)
T ss_pred cCCEEEEEe-c-HHHHHHHHHHHccC-CCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEec
Confidence 368999999 8 89999999998752 12333331 1111 2221000 011233322
Q ss_pred -cCcc----CCCCCcEEEecCCCchhhhhHHH-HHhCCCEEEEcCC
Q 023678 94 -LTED----SFDGVDIALFSAGGSISKKFGPI-AVEKGSIVVDNSS 133 (279)
Q Consensus 94 -~d~~----~~~~~DvVf~a~g~~~s~~~~~~-~~~aG~~VIDlS~ 133 (279)
++.+ .+.++|+|+.|++.-.++.++.. +.+.|+.+|..++
T Consensus 184 ~i~~~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~ 229 (722)
T PRK07877 184 GLTEDNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATS 229 (722)
T ss_pred cCCHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcC
Confidence 2221 24689999999999888777754 4678999997665
No 422
>PRK08628 short chain dehydrogenase; Provisional
Probab=89.01 E-value=0.56 Score=41.50 Aligned_cols=28 Identities=18% Similarity=0.198 Sum_probs=24.3
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++..++.|.||+|.+|+++.+.|.+++.
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~ 32 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGA 32 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCC
Confidence 4456899999999999999999998753
No 423
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.00 E-value=1.2 Score=39.20 Aligned_cols=87 Identities=20% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC-CceeeeCCceeEEeecCccCC-CCCcEEEec-CCCch
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQDKAYTVEELTEDSF-DGVDIALFS-AGGSI 113 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~-G~~~~~~~~~~~v~~~d~~~~-~~~DvVf~a-~g~~~ 113 (279)
.+.++|+|+| .|.+|+.+.+.|.+.++ +++ +.+++.. -..+.... .....+. .+.+ .++|+++.| .+.-+
T Consensus 26 l~gk~v~I~G-~G~vG~~~A~~L~~~G~---~Vv-v~D~~~~~~~~~~~~~-g~~~v~~-~~l~~~~~Dv~vp~A~~~~I 98 (200)
T cd01075 26 LEGKTVAVQG-LGKVGYKLAEHLLEEGA---KLI-VADINEEAVARAAELF-GATVVAP-EEIYSVDADVFAPCALGGVI 98 (200)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCC---EEE-EEcCCHHHHHHHHHHc-CCEEEcc-hhhccccCCEEEeccccccc
Confidence 3457999999 59999999999998754 454 3232211 01110000 1111111 1223 379999955 55556
Q ss_pred hhhhHHHHHhCCC-EEEEcCC
Q 023678 114 SKKFGPIAVEKGS-IVVDNSS 133 (279)
Q Consensus 114 s~~~~~~~~~aG~-~VIDlS~ 133 (279)
..+.++++ ++ .|++...
T Consensus 99 ~~~~~~~l---~~~~v~~~AN 116 (200)
T cd01075 99 NDDTIPQL---KAKAIAGAAN 116 (200)
T ss_pred CHHHHHHc---CCCEEEECCc
Confidence 66666544 34 4555443
No 424
>PRK07806 short chain dehydrogenase; Provisional
Probab=88.92 E-value=0.45 Score=41.74 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+.+++.|.++++ +++.+
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~---~V~~~ 36 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA---HVVVN 36 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 44444
No 425
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=88.86 E-value=2.2 Score=37.77 Aligned_cols=91 Identities=12% Similarity=0.249 Sum_probs=54.4
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC----CCCceeeeCCceeEEeecC---ccCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR----SAGKQLSFQDKAYTVEELT---EDSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~----s~G~~~~~~~~~~~v~~~d---~~~~~~~DvVf~a~g 110 (279)
+..+|.|||.+..||+=|.-+|.+++ ..+...-++. +.+..+ .+......+.+ .+....+|+|+.|.|
T Consensus 61 ~GK~vvVIGrS~iVGkPla~lL~~~~---AtVti~~~~~~~~~~~~~~~--~hs~t~~~~~~~~l~~~~~~ADIVIsAvG 135 (197)
T cd01079 61 YGKTITIINRSEVVGRPLAALLANDG---ARVYSVDINGIQVFTRGESI--RHEKHHVTDEEAMTLDCLSQSDVVITGVP 135 (197)
T ss_pred CCCEEEEECCCccchHHHHHHHHHCC---CEEEEEecCccccccccccc--ccccccccchhhHHHHHhhhCCEEEEccC
Confidence 35799999999999999999998763 3433331110 000000 01000001100 123478999999998
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
...-. +-....+.|+.|||.+..
T Consensus 136 ~~~~~-i~~d~ik~GavVIDVGi~ 158 (197)
T cd01079 136 SPNYK-VPTELLKDGAICINFASI 158 (197)
T ss_pred CCCCc-cCHHHcCCCcEEEEcCCC
Confidence 75321 234567889999998865
No 426
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=88.85 E-value=0.61 Score=40.92 Aligned_cols=31 Identities=16% Similarity=0.276 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||||.+|+++++.|.++++ +++.+
T Consensus 4 ~~~vlItG~sg~iG~~la~~l~~~g~---~v~~~ 34 (258)
T PRK12429 4 GKVALVTGAASGIGLEIALALAKEGA---KVVIA 34 (258)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---eEEEE
Confidence 36899999999999999999998754 55555
No 427
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=88.74 E-value=4.8 Score=37.22 Aligned_cols=98 Identities=16% Similarity=0.190 Sum_probs=56.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee----cCCCCceeee-------------------CCceeEEee--
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS----KRSAGKQLSF-------------------QDKAYTVEE-- 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s----~~s~G~~~~~-------------------~~~~~~v~~-- 93 (279)
..+|.|+| .|-||.++++.|...|.- ++.++-. ....++.+-+ .+....+..
T Consensus 30 ~s~VlVvG-~GGVGs~vae~Lar~GVg--~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~ 106 (268)
T PRK15116 30 DAHICVVG-IGGVGSWAAEALARTGIG--AITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD 106 (268)
T ss_pred CCCEEEEC-cCHHHHHHHHHHHHcCCC--EEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence 46899999 699999999999987533 3333321 1112211100 011222221
Q ss_pred --cCcc----CC-CCCcEEEecCCCchhhh-hHHHHHhCCCEEEEcCCC-CCCCC
Q 023678 94 --LTED----SF-DGVDIALFSAGGSISKK-FGPIAVEKGSIVVDNSSA-FRMVE 139 (279)
Q Consensus 94 --~d~~----~~-~~~DvVf~a~g~~~s~~-~~~~~~~aG~~VIDlS~~-~R~~~ 139 (279)
++++ .+ .+.|+|+.|.+.-.++. +...+.+.++++|...++ -|+|+
T Consensus 107 ~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gGag~k~dp 161 (268)
T PRK15116 107 DFITPDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQIDP 161 (268)
T ss_pred cccChhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECCcccCCCC
Confidence 1111 12 46899999999865554 444556789998866555 44454
No 428
>PRK07890 short chain dehydrogenase; Provisional
Probab=88.69 E-value=0.78 Score=40.38 Aligned_cols=31 Identities=16% Similarity=0.222 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||.+|+.+.+.|.++++ +++.+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~G~---~V~~~ 35 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARAGA---DVVLA 35 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC---EEEEE
Confidence 46899999999999999999998854 54444
No 429
>PLN02503 fatty acyl-CoA reductase 2
Probab=88.62 E-value=0.7 Score=47.47 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=27.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCc-eEEEEEee
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPY-RSIKMLAS 74 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s 74 (279)
.++|.|.||||++|..|++.|.+.. |. .++.++..
T Consensus 119 ~k~VlVTGaTGFLGk~LlekLLr~~-~~v~kIy~LvR 154 (605)
T PLN02503 119 GKNFLITGATGFLAKVLIEKILRTN-PDVGKIYLLIK 154 (605)
T ss_pred CCEEEEcCCchHHHHHHHHHHHHhC-CCCcEEEEEEe
Confidence 5789999999999999999988654 44 46666643
No 430
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=88.56 E-value=0.7 Score=44.83 Aligned_cols=83 Identities=17% Similarity=0.252 Sum_probs=48.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCch-----
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI----- 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~----- 113 (279)
..+|+||| .|.||+.+.+.|..-| .++... ++.... .+....+.+++ +.+..+|+|++++|-+.
T Consensus 116 gktvGIIG-~G~IG~~vA~~l~a~G---~~V~~~-dp~~~~-----~~~~~~~~~L~-ell~~sDiI~lh~PLt~~g~~~ 184 (378)
T PRK15438 116 DRTVGIVG-VGNVGRRLQARLEALG---IKTLLC-DPPRAD-----RGDEGDFRSLD-ELVQEADILTFHTPLFKDGPYK 184 (378)
T ss_pred CCEEEEEC-cCHHHHHHHHHHHHCC---CEEEEE-CCcccc-----cccccccCCHH-HHHhhCCEEEEeCCCCCCcccc
Confidence 57999999 7999999999997653 354444 321110 01011112221 23568999999988543
Q ss_pred hhhhH--H--HHHhCCCEEEEcC
Q 023678 114 SKKFG--P--IAVEKGSIVVDNS 132 (279)
Q Consensus 114 s~~~~--~--~~~~aG~~VIDlS 132 (279)
+.... . ...+.|+.+|..+
T Consensus 185 T~~li~~~~l~~mk~gailIN~a 207 (378)
T PRK15438 185 TLHLADEKLIRSLKPGAILINAC 207 (378)
T ss_pred cccccCHHHHhcCCCCcEEEECC
Confidence 22111 1 2246788888654
No 431
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.49 E-value=1 Score=42.88 Aligned_cols=91 Identities=15% Similarity=0.196 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec---------------CCCCc--eee--------eCCceeEEe-
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK---------------RSAGK--QLS--------FQDKAYTVE- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~---------------~s~G~--~~~--------~~~~~~~v~- 92 (279)
..||.|+|+ |-+|.+++..|...|.- ++.++... +..|+ +-. .....+.+.
T Consensus 24 ~~~VlVvG~-GglGs~va~~La~aGvg--~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~ 100 (339)
T PRK07688 24 EKHVLIIGA-GALGTANAEMLVRAGVG--KVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA 100 (339)
T ss_pred CCcEEEECC-CHHHHHHHHHHHHcCCC--eEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence 468999996 99999999999987543 44444211 01211 100 001122222
Q ss_pred ---ecCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcC
Q 023678 93 ---ELTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNS 132 (279)
Q Consensus 93 ---~~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS 132 (279)
+++. +.+.++|+|+.|++...++.+...+ .+.|..+|..+
T Consensus 101 ~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~ 148 (339)
T PRK07688 101 IVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGA 148 (339)
T ss_pred EeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEe
Confidence 2222 1257899999999988877766554 57888888543
No 432
>PRK06139 short chain dehydrogenase; Provisional
Probab=88.43 E-value=1 Score=42.45 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=26.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+..+|.|.||+|-+|+++.+.|.++++ +++++
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~---~Vvl~ 37 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA---RLVLA 37 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 346899999999999999999998753 45544
No 433
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=88.40 E-value=1 Score=43.41 Aligned_cols=95 Identities=18% Similarity=0.220 Sum_probs=60.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..+|.|||.+..||+=|..+|.+++ ..+....|+. + ++ .+....+|+|+.|.|...- +-
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~---ATVTicHs~T---~------------nl-~~~~r~ADIVIsAvGkp~~--i~ 289 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQRED---ATVSIVHSRT---K------------NP-EEITREADIIISAVGQPNM--VR 289 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCC---CeEEEeCCCC---C------------CH-HHHHhhCCEEEEcCCCcCc--CC
Confidence 5799999999999999999998762 3433333221 0 00 1224678999999986532 34
Q ss_pred HHHHhCCCEEEEcCCCCCCCCC----CceeeccCCHHhhhc
Q 023678 119 PIAVEKGSIVVDNSSAFRMVEN----VPLVIPEVNPEAMSG 155 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~----vplvvPevN~~~i~~ 155 (279)
....+.|+.|||..=.+ .+++ ..-++-.|+-+....
T Consensus 290 ~d~vK~GAvVIDVGIn~-~~~~~~~~g~klvGDVdfe~v~~ 329 (364)
T PLN02616 290 GSWIKPGAVVIDVGINP-VEDASSPRGYRLVGDVCYEEACK 329 (364)
T ss_pred HHHcCCCCEEEeccccc-cccccccCCCeEEecCcHHHHHh
Confidence 55678999999987554 3221 113566677555543
No 434
>PRK08251 short chain dehydrogenase; Provisional
Probab=88.35 E-value=0.81 Score=40.10 Aligned_cols=30 Identities=10% Similarity=0.381 Sum_probs=24.6
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++.|.||+|.+|+.+.+.|.+++ .+++++
T Consensus 3 k~vlItGas~giG~~la~~l~~~g---~~v~~~ 32 (248)
T PRK08251 3 QKILITGASSGLGAGMAREFAAKG---RDLALC 32 (248)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC---CEEEEE
Confidence 579999999999999999999874 244444
No 435
>PLN02928 oxidoreductase family protein
Probab=88.34 E-value=0.86 Score=43.50 Aligned_cols=87 Identities=16% Similarity=0.177 Sum_probs=49.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee------CC-ce-----eEEeecCccCCCCCcEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF------QD-KA-----YTVEELTEDSFDGVDIAL 106 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~------~~-~~-----~~v~~~d~~~~~~~DvVf 106 (279)
..+|+|+| .|.+|+.+.+.|..-| .++... ++. ....... .. .. ....++ .+.+..+|+|+
T Consensus 159 gktvGIiG-~G~IG~~vA~~l~afG---~~V~~~-dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L-~ell~~aDiVv 231 (347)
T PLN02928 159 GKTVFILG-YGAIGIELAKRLRPFG---VKLLAT-RRS-WTSEPEDGLLIPNGDVDDLVDEKGGHEDI-YEFAGEADIVV 231 (347)
T ss_pred CCEEEEEC-CCHHHHHHHHHHhhCC---CEEEEE-CCC-CChhhhhhhccccccccccccccCcccCH-HHHHhhCCEEE
Confidence 47999999 7999999999997653 355444 332 1110000 00 00 011111 13357899999
Q ss_pred ecCCCchh-hhhH--H--HHHhCCCEEEEcC
Q 023678 107 FSAGGSIS-KKFG--P--IAVEKGSIVVDNS 132 (279)
Q Consensus 107 ~a~g~~~s-~~~~--~--~~~~aG~~VIDlS 132 (279)
+++|-+.. +.+. . ...+.|+.+|+.+
T Consensus 232 l~lPlt~~T~~li~~~~l~~Mk~ga~lINva 262 (347)
T PLN02928 232 LCCTLTKETAGIVNDEFLSSMKKGALLVNIA 262 (347)
T ss_pred ECCCCChHhhcccCHHHHhcCCCCeEEEECC
Confidence 99985433 2221 1 1236788888765
No 436
>PRK06924 short chain dehydrogenase; Provisional
Probab=88.28 E-value=0.91 Score=39.86 Aligned_cols=30 Identities=13% Similarity=0.304 Sum_probs=25.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~---~V~~~ 31 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGT---HVISI 31 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCC---EEEEE
Confidence 4799999999999999999998753 55544
No 437
>PRK06914 short chain dehydrogenase; Provisional
Probab=88.25 E-value=0.57 Score=42.04 Aligned_cols=31 Identities=13% Similarity=0.155 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
...+.|.||||.+|+.+++.|.++++ +++.+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~---~V~~~ 33 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGY---LVIAT 33 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCC---EEEEE
Confidence 45799999999999999999998754 45555
No 438
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=88.21 E-value=0.81 Score=40.05 Aligned_cols=31 Identities=13% Similarity=0.216 Sum_probs=25.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
.++.|.||||++|+.|++.|.++++ +++++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~---~v~~~~ 32 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA---NVVVND 32 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC---EEEEEe
Confidence 4799999999999999999988754 555553
No 439
>PRK12746 short chain dehydrogenase; Provisional
Probab=88.20 E-value=0.87 Score=40.07 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..+|.|.||+|.+|+++++.|.++++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~G~ 31 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLANDGA 31 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 36899999999999999999998753
No 440
>PRK09135 pteridine reductase; Provisional
Probab=88.19 E-value=0.92 Score=39.48 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~ 73 (279)
..+|.|.||+|++|+.+.+.|.++++ +++.+.
T Consensus 6 ~~~vlItGa~g~iG~~l~~~l~~~g~---~v~~~~ 37 (249)
T PRK09135 6 AKVALITGGARRIGAAIARTLHAAGY---RVAIHY 37 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEEc
Confidence 36899999999999999999998743 555553
No 441
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=88.18 E-value=0.73 Score=42.58 Aligned_cols=36 Identities=17% Similarity=0.454 Sum_probs=29.5
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeec
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASK 75 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~ 75 (279)
+++.++.|.|||+=+|.++.+.|+++++ ++++++.+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~---~liLvaR~ 39 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY---NLILVARR 39 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC---EEEEEeCc
Confidence 4457899999999999999999999855 56677533
No 442
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=88.16 E-value=3 Score=38.36 Aligned_cols=89 Identities=18% Similarity=0.226 Sum_probs=54.9
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC-----CCCceee----------eCC---ceeE-----Eeec
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR-----SAGKQLS----------FQD---KAYT-----VEEL 94 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~-----s~G~~~~----------~~~---~~~~-----v~~~ 94 (279)
+..||+|-| .|.||+.+.+.|.+. ..+++.++..+ ..|-.+. ..+ ..+. ...+
T Consensus 37 ~g~~vaIqG-fGnVG~~~a~~L~e~---GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 37 KGKRVAISG-SGNVAQYAAEKLLEL---GAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHC---CCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 357999999 899999999999886 35777675421 1121110 000 0000 1112
Q ss_pred Ccc-CC-CCCcEEEec-CCCchhhhhHHHHHhCCCEEEE
Q 023678 95 TED-SF-DGVDIALFS-AGGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 95 d~~-~~-~~~DvVf~a-~g~~~s~~~~~~~~~aG~~VID 130 (279)
+.+ .| .+|||.+-| ++..+..+.++++.+.+|++|=
T Consensus 113 ~~~~~~~~~~DIliPcAl~~~I~~~na~~i~~~~ak~I~ 151 (254)
T cd05313 113 EGKKPWEVPCDIAFPCATQNEVDAEDAKLLVKNGCKYVA 151 (254)
T ss_pred CCcchhcCCCcEEEeccccccCCHHHHHHHHHcCCEEEE
Confidence 222 23 378988766 5667778888888878888773
No 443
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=88.15 E-value=0.79 Score=46.21 Aligned_cols=87 Identities=8% Similarity=0.135 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchh-hhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-KKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s-~~~ 117 (279)
.++|+|+| .|.+|+.+.+.|..-+ .++..+ ++..........+ ....++ .+.+..+|+|++++|.+.. +.+
T Consensus 140 gktvgIiG-~G~IG~~vA~~l~~fG---~~V~~~-d~~~~~~~~~~~g--~~~~~l-~ell~~aDiV~l~lP~t~~t~~l 211 (526)
T PRK13581 140 GKTLGIIG-LGRIGSEVAKRAKAFG---MKVIAY-DPYISPERAAQLG--VELVSL-DELLARADFITLHTPLTPETRGL 211 (526)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCC---CEEEEE-CCCCChhHHHhcC--CEEEcH-HHHHhhCCEEEEccCCChHhhcC
Confidence 47899999 7999999999997653 355544 3221111000011 112222 1345789999999997633 222
Q ss_pred H----HHHHhCCCEEEEcCC
Q 023678 118 G----PIAVEKGSIVVDNSS 133 (279)
Q Consensus 118 ~----~~~~~aG~~VIDlS~ 133 (279)
. -...+.|+.+|+.+-
T Consensus 212 i~~~~l~~mk~ga~lIN~aR 231 (526)
T PRK13581 212 IGAEELAKMKPGVRIINCAR 231 (526)
T ss_pred cCHHHHhcCCCCeEEEECCC
Confidence 2 122467899997764
No 444
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=88.15 E-value=0.61 Score=41.73 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=21.8
Q ss_pred EECcCcHHHHHHHHHHHcCCCCceEEEEEee
Q 023678 44 VVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (279)
Q Consensus 44 IiGATG~VG~eLl~lL~~~~~p~~~l~~l~s 74 (279)
|-||||++|+.|++.|.++. +..++..+..
T Consensus 1 lTGaTGflG~~ll~~Ll~~~-~~~~I~cLvR 30 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQP-PDVKIYCLVR 30 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS--TTEEEEEE-
T ss_pred CcCCCcHHHHHHHHHHHcCC-CCcEEEEEEe
Confidence 57999999999999988773 2247777753
No 445
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=88.12 E-value=0.33 Score=42.16 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=20.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFP 65 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p 65 (279)
|||+|+| .||+|..+.-.|+++||.
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~ 25 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQ 25 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSE
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCE
Confidence 7999999 899999999999998764
No 446
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=88.11 E-value=0.76 Score=43.32 Aligned_cols=151 Identities=19% Similarity=0.254 Sum_probs=77.5
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
+..+|+-|| .|.-|..++.-|...+|. +.... +...+...|...-..+.+-..+..+.+|+||.+++.....+.
T Consensus 34 s~~~iGFIG-LG~MG~~M~~nLik~G~k---VtV~d--r~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~ 107 (327)
T KOG0409|consen 34 SKTRIGFIG-LGNMGSAMVSNLIKAGYK---VTVYD--RTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKD 107 (327)
T ss_pred ccceeeEEe-eccchHHHHHHHHHcCCE---EEEEe--CcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHH
Confidence 367999999 999999999999988764 44443 222211111100111211111223578888888887654332
Q ss_pred HHH-------HHhCCCEE-EEcCCCCCCCCCC-------------ceeeccCCHHhhhccccCCCCCcEEECCCChHHHH
Q 023678 118 GPI-------AVEKGSIV-VDNSSAFRMVENV-------------PLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIIC 176 (279)
Q Consensus 118 ~~~-------~~~aG~~V-IDlS~~~R~~~~v-------------plvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l 176 (279)
+-. ....|.+. ||.|.. |++. .++=..|....... .+..++--.| ..-++
T Consensus 108 v~~g~~Gvl~g~~~g~~~~vDmSTi---dp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A-----~~G~Ltimag-Gde~~ 178 (327)
T KOG0409|consen 108 VLLGKSGVLSGIRPGKKATVDMSTI---DPDTSLEIAKAISNKGGRFVDAPVSGGVKGA-----EEGTLTIMAG-GDEAL 178 (327)
T ss_pred HhcCCCcceeeccCCCceEEecccc---CHHHHHHHHHHHHhCCCeEEeccccCCchhh-----hcCeEEEEec-CcHHH
Confidence 210 01123333 777653 3321 12222222211110 0223333333 35666
Q ss_pred HHhhhchhhhcCccEEEEEEeecccccChhh
Q 023678 177 LMAATPLHRRAKVTRMVVSTYQAASGAGAAA 207 (279)
Q Consensus 177 ~laL~PL~~~~~i~~v~vtt~q~vSGaG~~~ 207 (279)
.-.+.|+++.-+ + -..|-|.+|.|.+.
T Consensus 179 ~~~~~~~~~~mG-k---~~~~~G~~GnG~~~ 205 (327)
T KOG0409|consen 179 FEAASPVFKLMG-K---NVVFLGGVGNGQAA 205 (327)
T ss_pred HHHHHHHHHHhc-c---eEEEecccCchHHH
Confidence 777888877543 1 24578999999776
No 447
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.09 E-value=1.7 Score=42.99 Aligned_cols=87 Identities=18% Similarity=0.239 Sum_probs=53.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-ee-eeCCceeEEeecCccCCCCCcEEEecCCCchhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-QL-SFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK 116 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~~-~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~ 116 (279)
+.||.|+| .|-.|+.+++.|.+.++ ++... .++.... .+ ...+..+.....+.+.+.+.|+|+.+-+-.....
T Consensus 15 ~~~v~v~G-~G~sG~a~a~~L~~~G~---~V~~~-D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p 89 (473)
T PRK00141 15 SGRVLVAG-AGVSGRGIAAMLSELGC---DVVVA-DDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSP 89 (473)
T ss_pred CCeEEEEc-cCHHHHHHHHHHHHCCC---EEEEE-CCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCH
Confidence 35799999 79999999999998753 33333 3321111 11 1111111111112233567899998877666667
Q ss_pred hHHHHHhCCCEEEE
Q 023678 117 FGPIAVEKGSIVVD 130 (279)
Q Consensus 117 ~~~~~~~aG~~VID 130 (279)
...++.+.|+.|+.
T Consensus 90 ~~~~a~~~gi~v~~ 103 (473)
T PRK00141 90 LLVDAQSQGLEVIG 103 (473)
T ss_pred HHHHHHHCCCceee
Confidence 78888899999884
No 448
>PRK07577 short chain dehydrogenase; Provisional
Probab=88.09 E-value=0.67 Score=40.20 Aligned_cols=31 Identities=19% Similarity=0.275 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||||.+|+.+.+.|.++++ +++.+
T Consensus 3 ~k~vlItG~s~~iG~~ia~~l~~~G~---~v~~~ 33 (234)
T PRK07577 3 SRTVLVTGATKGIGLALSLRLANLGH---QVIGI 33 (234)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998753 55555
No 449
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=88.08 E-value=1.2 Score=41.64 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee----C---CceeEEeecCccCCCCCcEEEecCC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF----Q---DKAYTVEELTEDSFDGVDIALFSAG 110 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~----~---~~~~~v~~~d~~~~~~~DvVf~a~g 110 (279)
+..+++|+| +|.-|+.-++.+..- +|..++. +.+|.. .+.-.| . +.++.+.+-..+...++|+|+.||+
T Consensus 116 da~~l~iiG-aG~QA~~~~~a~~~v-~~i~~v~-v~~r~~-~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~ 191 (301)
T PRK06407 116 NVENFTIIG-SGFQAETQLEGMASV-YNPKRIR-VYSRNF-DHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITN 191 (301)
T ss_pred CCcEEEEEC-CcHHHHHHHHHHHhc-CCCCEEE-EECCCH-HHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecC
Confidence 357899999 899999988887653 3544544 444432 221111 0 1122222111234578999999999
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
+..- -+-...++.|..|+-..++
T Consensus 192 s~~P-~~~~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 192 SDTP-IFNRKYLGDEYHVNLAGSN 214 (301)
T ss_pred CCCc-EecHHHcCCCceEEecCCC
Confidence 7642 1223456789888766554
No 450
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.06 E-value=0.87 Score=42.24 Aligned_cols=67 Identities=21% Similarity=0.409 Sum_probs=39.8
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCC--Cceeee------CCceeEEee-cCccCCCCCcEEEecCCC
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA--GKQLSF------QDKAYTVEE-LTEDSFDGVDIALFSAGG 111 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~--G~~~~~------~~~~~~v~~-~d~~~~~~~DvVf~a~g~ 111 (279)
|+|+|| |++|..+...|..+++- +++++.-.... |..+.. ......+.. .|.+++.++|+||.+.+.
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~--eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~~l~dADiVIit~g~ 76 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELG--DVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYEDIAGSDVVVITAGI 76 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCc--EEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHHHhCCCCEEEEecCC
Confidence 689997 99999999988876432 66666322211 111110 111223332 233457899999998863
No 451
>PRK06180 short chain dehydrogenase; Provisional
Probab=87.99 E-value=0.73 Score=41.55 Aligned_cols=31 Identities=10% Similarity=0.146 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+++|.|.||+|.+|+.+++.|.++++ +++.+
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~---~V~~~ 34 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH---RVVGT 34 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC---EEEEE
Confidence 46799999999999999999998753 45554
No 452
>PRK06125 short chain dehydrogenase; Provisional
Probab=87.97 E-value=1.3 Score=39.39 Aligned_cols=31 Identities=10% Similarity=0.315 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.|++|.+|+.+.+.|.++++ +++.+
T Consensus 7 ~k~vlItG~~~giG~~ia~~l~~~G~---~V~~~ 37 (259)
T PRK06125 7 GKRVLITGASKGIGAAAAEAFAAEGC---HLHLV 37 (259)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCC---EEEEE
Confidence 46899999999999999999998743 55555
No 453
>KOG2742 consensus Predicted oxidoreductase [General function prediction only]
Probab=87.92 E-value=0.23 Score=47.38 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=57.6
Q ss_pred EEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc--eeeeCCceeEEeecCccCC-CCCcEEEecCCCchhhhhH
Q 023678 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK--QLSFQDKAYTVEELTEDSF-DGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 42 VaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~--~~~~~~~~~~v~~~d~~~~-~~~DvVf~a~g~~~s~~~~ 118 (279)
|+|+| ||..-+.++-+|.+- + +++.++..|...-. ..++.........+|+-.+ .++|.|+.+++.-..+++.
T Consensus 5 v~v~G-Tg~~arv~iP~l~e~--~-f~v~A~w~Rt~~ea~a~aa~~~v~~~t~~~deiLl~~~vdlv~i~lpp~~~~eI~ 80 (367)
T KOG2742|consen 5 VGVFG-TGIFARVLIPLLKEE--G-FEVKAIWGRTKTEAKAKAAEMNVRKYTSRLDEILLDQDVDLVCISLPPPLHAEIV 80 (367)
T ss_pred eeEec-cChhHhhhhhhhhhc--c-chHhhhhchhhhHHHHhhhccchhhccccchhhhccCCcceeEeccCCccceeee
Confidence 99999 999999998888876 4 67777766521100 0001001111112222112 4789999999999999999
Q ss_pred HHHHhCCCEEE-EcCC
Q 023678 119 PIAVEKGSIVV-DNSS 133 (279)
Q Consensus 119 ~~~~~aG~~VI-DlS~ 133 (279)
.+++..|..|| |..+
T Consensus 81 ~kal~~Gk~Vvcek~a 96 (367)
T KOG2742|consen 81 VKALGIGKHVVCEKPA 96 (367)
T ss_pred eccccCCceEEeccCC
Confidence 99999999777 4443
No 454
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=87.88 E-value=0.74 Score=43.84 Aligned_cols=80 Identities=6% Similarity=0.029 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHcCCCCceEEEEEeecCCCCc-----eeeeCCceeEEeecCccCCCCCcEEEecCCCchh-hhhHHH---
Q 023678 50 AVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-----QLSFQDKAYTVEELTEDSFDGVDIALFSAGGSIS-KKFGPI--- 120 (279)
Q Consensus 50 ~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-----~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s-~~~~~~--- 120 (279)
|.|+.+.+.|.+.||+ +......++.-. .+...+ ....+...+...++|+||+|++.+.. ++.+..
T Consensus 30 ~gGspMArnLlkAGhe---V~V~Drnrsa~e~e~~e~LaeaG--A~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa 104 (341)
T TIGR01724 30 YGGSRMAIEFAMAGHD---VVLAEPNREFMSDDLWKKVEDAG--VKVVSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIE 104 (341)
T ss_pred CCHHHHHHHHHHCCCE---EEEEeCChhhhhhhhhHHHHHCC--CeecCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHh
Confidence 4588999998887664 443422121110 111111 12222112345689999999998764 344332
Q ss_pred HHhCCCEEEEcCCC
Q 023678 121 AVEKGSIVVDNSSA 134 (279)
Q Consensus 121 ~~~aG~~VIDlS~~ 134 (279)
.+..|..|||.|..
T Consensus 105 ~L~~GaIVID~STI 118 (341)
T TIGR01724 105 HVPENAVICNTCTV 118 (341)
T ss_pred cCCCCCEEEECCCC
Confidence 24578999998864
No 455
>PRK06199 ornithine cyclodeaminase; Validated
Probab=87.82 E-value=0.9 Score=44.00 Aligned_cols=90 Identities=16% Similarity=0.252 Sum_probs=52.3
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCc-e----eee--CCc-eeEEeecCccCCCCCcEEEecC
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGK-Q----LSF--QDK-AYTVEELTEDSFDGVDIALFSA 109 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~-~----~~~--~~~-~~~v~~~d~~~~~~~DvVf~a~ 109 (279)
...+++|+| +|.-++.-++.+..- +|.++-+.+.+|..... . +.. .+. ++.+.+-..+...++|+|++|+
T Consensus 154 da~~l~iiG-~G~QA~~~l~a~~~v-~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT 231 (379)
T PRK06199 154 DSKVVGLLG-PGVMGKTILAAFMAV-CPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCN 231 (379)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHh-cCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEcc
Confidence 346899999 899999999988762 26555555656543211 1 110 111 1222221123467899999999
Q ss_pred CCchh-----hhhHHHHHhCCCEEE
Q 023678 110 GGSIS-----KKFGPIAVEKGSIVV 129 (279)
Q Consensus 110 g~~~s-----~~~~~~~~~aG~~VI 129 (279)
+.... --+-.+.++.|..|+
T Consensus 232 ~s~~~~~s~~Pv~~~~~lkpG~hv~ 256 (379)
T PRK06199 232 SGETGDPSTYPYVKREWVKPGAFLL 256 (379)
T ss_pred CCCCCCCCcCcEecHHHcCCCcEEe
Confidence 76431 122244567888776
No 456
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=87.77 E-value=0.64 Score=41.14 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=24.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
++..++.|.||+|.+|+++.+.|.++++
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~ 33 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGA 33 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC
Confidence 3456899999999999999999998754
No 457
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.72 E-value=0.75 Score=39.98 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
+.++.|+||||.+|.++.+.|.++++
T Consensus 5 ~~~ilI~Gasg~iG~~la~~l~~~g~ 30 (247)
T PRK05565 5 GKVAIVTGASGGIGRAIAELLAKEGA 30 (247)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC
Confidence 45899999999999999999988753
No 458
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=87.72 E-value=1.1 Score=44.25 Aligned_cols=90 Identities=18% Similarity=0.170 Sum_probs=50.6
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhh-
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKK- 116 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~- 116 (279)
...+|+|+| .|.+|+.+.+.|...+. ++++. .++ ..+..........+.+++ +.+.++|+||.|+|....-.
T Consensus 211 ~Gk~VlViG-~G~IG~~vA~~lr~~Ga---~ViV~-d~d-p~ra~~A~~~G~~v~~l~-eal~~aDVVI~aTG~~~vI~~ 283 (425)
T PRK05476 211 AGKVVVVAG-YGDVGKGCAQRLRGLGA---RVIVT-EVD-PICALQAAMDGFRVMTME-EAAELGDIFVTATGNKDVITA 283 (425)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCC---EEEEE-cCC-chhhHHHHhcCCEecCHH-HHHhCCCEEEECCCCHHHHHH
Confidence 356899999 59999999999987643 44333 222 111111000011122221 23468999999998643221
Q ss_pred hHHHHHhCCCEEEEcCCCC
Q 023678 117 FGPIAVEKGSIVVDNSSAF 135 (279)
Q Consensus 117 ~~~~~~~aG~~VIDlS~~~ 135 (279)
-.-...+.|++++. .+.|
T Consensus 284 ~~~~~mK~GailiN-vG~~ 301 (425)
T PRK05476 284 EHMEAMKDGAILAN-IGHF 301 (425)
T ss_pred HHHhcCCCCCEEEE-cCCC
Confidence 12234568888874 4444
No 459
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.64 E-value=1.4 Score=42.79 Aligned_cols=73 Identities=16% Similarity=0.235 Sum_probs=41.4
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEeecC------ccCCCCCcEEEecCCCc
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVEELT------EDSFDGVDIALFSAGGS 112 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~~~d------~~~~~~~DvVf~a~g~~ 112 (279)
|+|.|+|+ |.+|+.+.+.|.+.++ +++.+......-..+.. .+......+.. ...+.++|.|+.+++.+
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~---~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENN---DVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCC---cEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 58999996 9999999999988755 34445321111111111 11111122211 12256899999999875
Q ss_pred hhhh
Q 023678 113 ISKK 116 (279)
Q Consensus 113 ~s~~ 116 (279)
....
T Consensus 77 ~~n~ 80 (453)
T PRK09496 77 ETNM 80 (453)
T ss_pred HHHH
Confidence 4433
No 460
>PRK09291 short chain dehydrogenase; Provisional
Probab=87.58 E-value=0.82 Score=40.24 Aligned_cols=30 Identities=13% Similarity=0.261 Sum_probs=24.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+|.|.||||.+|+.+++.|.++++ +++++
T Consensus 3 ~~vlVtGasg~iG~~ia~~l~~~G~---~v~~~ 32 (257)
T PRK09291 3 KTILITGAGSGFGREVALRLARKGH---NVIAG 32 (257)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCC---EEEEE
Confidence 4799999999999999999998753 44444
No 461
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=87.56 E-value=4.9 Score=37.81 Aligned_cols=88 Identities=13% Similarity=0.018 Sum_probs=59.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe-ecCccCC-C--CCcEEEecCCCchhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE-ELTEDSF-D--GVDIALFSAGGSISK 115 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~-~~d~~~~-~--~~DvVf~a~g~~~s~ 115 (279)
.||.|.|-||.-|....+.+.+- ..+++.-.+.+.-+..+. + +.+. .+ .++ . ++|+++.++|.....
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y---gt~~~~gV~p~~~~~~i~--G--~~~y~sv--~dlp~~~~~DlAvI~vPa~~v~ 83 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY---GTKMVGGVTPKKGGTEHL--G--LPVFNTV--AEAKAETKANASVIYVPPPFAA 83 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh---CCcEEEEECCCCCCceEc--C--eeccCCH--HHHhhccCCCEEEEecCHHHHH
Confidence 68999999999999999988764 234554443332112221 1 1221 11 111 1 379999999999999
Q ss_pred hhHHHHHhCCCE-EEEcCCCCC
Q 023678 116 KFGPIAVEKGSI-VVDNSSAFR 136 (279)
Q Consensus 116 ~~~~~~~~aG~~-VIDlS~~~R 136 (279)
..+.++.++|++ +|=.|+-|.
T Consensus 84 ~al~e~~~~Gvk~~vIisaGf~ 105 (300)
T PLN00125 84 AAILEAMEAELDLVVCITEGIP 105 (300)
T ss_pred HHHHHHHHcCCCEEEEECCCCC
Confidence 999999999996 555788884
No 462
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=87.51 E-value=1.2 Score=40.04 Aligned_cols=31 Identities=16% Similarity=0.307 Sum_probs=25.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..++.|.||+|.+|+++.+.|.++++ +++.+
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~G~---~V~~~ 40 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARAGA---KVAIL 40 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 44444
No 463
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.51 E-value=1.1 Score=39.45 Aligned_cols=31 Identities=16% Similarity=0.198 Sum_probs=26.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+++.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 11 ~k~ilItGas~~IG~~la~~l~~~G~---~v~~~ 41 (256)
T PRK06124 11 GQVALVTGSARGLGFEIARALAGAGA---HVLVN 41 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCC---eEEEE
Confidence 46899999999999999999998754 55555
No 464
>PRK07774 short chain dehydrogenase; Provisional
Probab=87.50 E-value=0.69 Score=40.52 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+++.|.||+|++|+.+.+.|.++++ +++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~---~vi~~ 36 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA---SVVVA 36 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
No 465
>PRK14851 hypothetical protein; Provisional
Probab=87.48 E-value=5.4 Score=41.65 Aligned_cols=150 Identities=22% Similarity=0.190 Sum_probs=80.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE--ee-----------cCCCCceeee----------CCceeEEe--e
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML--AS-----------KRSAGKQLSF----------QDKAYTVE--E 93 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l--~s-----------~~s~G~~~~~----------~~~~~~v~--~ 93 (279)
..||+|+| -|-+|..++..|..-|.-.+.++=. .. ....|++-.. ...++... .
T Consensus 43 ~~~VlIvG-~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~ 121 (679)
T PRK14851 43 EAKVAIPG-MGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAG 121 (679)
T ss_pred cCeEEEEC-cCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 46899999 5889999999998875433332211 01 1122321110 11122222 1
Q ss_pred cCcc----CCCCCcEEEecCCCc--hhh-hhHHHHHhCCCEEEEcCC-----------C--------CCCCCC-------
Q 023678 94 LTED----SFDGVDIALFSAGGS--ISK-KFGPIAVEKGSIVVDNSS-----------A--------FRMVEN------- 140 (279)
Q Consensus 94 ~d~~----~~~~~DvVf~a~g~~--~s~-~~~~~~~~aG~~VIDlS~-----------~--------~R~~~~------- 140 (279)
++.+ .+.++|+|+.|++.. .++ .+...+.+.|+.+|+.+. + |.++++
T Consensus 122 i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 201 (679)
T PRK14851 122 INADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQGMGFDDYFNIGGKMPEEQKY 201 (679)
T ss_pred CChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCCCCCHhHhccCCCCCChHHHH
Confidence 2221 247899999999863 233 344556788998886541 0 111111
Q ss_pred ---------CceeeccCCHHhhhccccCCCCCcEEECCCChHHHHHHhhhchhhhcCcc
Q 023678 141 ---------VPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVT 190 (279)
Q Consensus 141 ---------vplvvPevN~~~i~~~~~~~~~~~iVanPgC~tt~l~laL~PL~~~~~i~ 190 (279)
-|+-...+....+ ++..+++...+++|-.|...+-..+++-|.-...|.
T Consensus 202 ~~~~~g~~p~~~~~~~~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (679)
T PRK14851 202 LRFAMGLAPRPTHIKYMDLSKV-DLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGGLR 259 (679)
T ss_pred HHHHhcCCCcchhhccCcHhhc-CCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCeee
Confidence 0111122222333 233333356778888999888888888776555554
No 466
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=87.32 E-value=1.9 Score=40.66 Aligned_cols=38 Identities=13% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEcCCCCCCC
Q 023678 99 FDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 99 ~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDlS~~~R~~ 138 (279)
++++|+||.|++...++-+...+ ...|..+|+ +...++
T Consensus 106 i~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~--aalGfd 144 (307)
T cd01486 106 IKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN--AALGFD 144 (307)
T ss_pred HhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE--EEeccc
Confidence 46899999999999887555544 457888886 344444
No 467
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.29 E-value=1.4 Score=43.84 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=54.2
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCce-eeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ-LSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~-~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
.+|+|+| .|..|...++.|..++. ++.. ...+..... +...+..+...+...+.+.++|+|+.+.|-.......
T Consensus 13 ~~v~V~G-~G~sG~aa~~~L~~~G~---~v~~-~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~ 87 (488)
T PRK03369 13 APVLVAG-AGVTGRAVLAALTRFGA---RPTV-CDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVL 87 (488)
T ss_pred CeEEEEc-CCHHHHHHHHHHHHCCC---EEEE-EcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHH
Confidence 5899999 69999999999987753 4333 232211100 0111111111111123456789999999887778888
Q ss_pred HHHHhCCCEEE
Q 023678 119 PIAVEKGSIVV 129 (279)
Q Consensus 119 ~~~~~aG~~VI 129 (279)
..+.++|+.|+
T Consensus 88 ~~a~~~gi~v~ 98 (488)
T PRK03369 88 AAAAAAGVPIW 98 (488)
T ss_pred HHHHHCCCcEe
Confidence 88999999988
No 468
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.29 E-value=0.89 Score=44.00 Aligned_cols=36 Identities=31% Similarity=0.378 Sum_probs=29.5
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS 77 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s 77 (279)
++|.+-|||||.|+-|++.|..+ ...++..+...++
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~--~~~kv~cLVRA~s 36 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDR--SDAKVICLVRAQS 36 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhc--CCCcEEEEEecCC
Confidence 36889999999999999998887 6688888865444
No 469
>PRK09186 flagellin modification protein A; Provisional
Probab=87.26 E-value=0.71 Score=40.62 Aligned_cols=31 Identities=10% Similarity=0.284 Sum_probs=25.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.++|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~g~---~v~~~ 34 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEAGG---IVIAA 34 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998754 45444
No 470
>PRK08177 short chain dehydrogenase; Provisional
Probab=87.23 E-value=1.2 Score=38.64 Aligned_cols=30 Identities=13% Similarity=0.402 Sum_probs=25.1
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+|.|.||+|.+|+.+++.|.++++ ++..+
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~---~V~~~ 31 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW---QVTAT 31 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC---EEEEE
Confidence 5799999999999999999998753 55555
No 471
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.22 E-value=1 Score=44.69 Aligned_cols=73 Identities=12% Similarity=0.161 Sum_probs=45.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCC----CCceEEEEEeecCCC----Cceeee-----C-CceeEEeecCccCCCCCcE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRD----FPYRSIKMLASKRSA----GKQLSF-----Q-DKAYTVEELTEDSFDGVDI 104 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~----~p~~~l~~l~s~~s~----G~~~~~-----~-~~~~~v~~~d~~~~~~~Dv 104 (279)
..||+|.||+|.+|-.|+-+|+.-+ ...+.|+++...... |..+.. . ...+.+..-+.+++.++|+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~~~~~ea~~daDv 202 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVTTDLDVAFKDAHV 202 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEEECCHHHhCCCCE
Confidence 4899999999999999999987631 133456666321111 111111 1 1123444333467899999
Q ss_pred EEecCCC
Q 023678 105 ALFSAGG 111 (279)
Q Consensus 105 Vf~a~g~ 111 (279)
||.+.+.
T Consensus 203 vIitag~ 209 (452)
T cd05295 203 IVLLDDF 209 (452)
T ss_pred EEECCCC
Confidence 9999875
No 472
>PRK07589 ornithine cyclodeaminase; Validated
Probab=87.17 E-value=1.3 Score=42.40 Aligned_cols=92 Identities=14% Similarity=0.160 Sum_probs=51.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-ceee----eCCceeEEeecCccCCCCCcEEEecCCCch
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-KQLS----FQDKAYTVEELTEDSFDGVDIALFSAGGSI 113 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~~~~----~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~ 113 (279)
..+++|+| +|..++..++.+..- +|..++.+. +|.... ..+. ..+.++.+.+--.+...++|+|++|+++..
T Consensus 129 a~~l~iiG-aG~QA~~~l~a~~~v-r~i~~V~v~-~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~ 205 (346)
T PRK07589 129 SRTMALIG-NGAQSEFQALAFKAL-LGIEEIRLY-DIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT 205 (346)
T ss_pred CcEEEEEC-CcHHHHHHHHHHHHh-CCceEEEEE-eCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC
Confidence 46799999 799999888876542 255555444 443211 1110 011122222211234578999999997543
Q ss_pred hhh-hHHHHHhCCCEEEEcCC
Q 023678 114 SKK-FGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 114 s~~-~~~~~~~aG~~VIDlS~ 133 (279)
... +-.+.++.|+.|+-..+
T Consensus 206 ~~Pvl~~~~lkpG~hV~aIGs 226 (346)
T PRK07589 206 NATILTDDMVEPGMHINAVGG 226 (346)
T ss_pred CCceecHHHcCCCcEEEecCC
Confidence 212 22356689998765544
No 473
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=87.16 E-value=1 Score=43.77 Aligned_cols=83 Identities=20% Similarity=0.227 Sum_probs=51.1
Q ss_pred EECcCcHHHHHHHHHHHcCCCCc-eEEEEEeecCCCCceee----eCCce--------------------eEEe-ecC--
Q 023678 44 VVGVTGAVGQEFLSVLSDRDFPY-RSIKMLASKRSAGKQLS----FQDKA--------------------YTVE-ELT-- 95 (279)
Q Consensus 44 IiGATG~VG~eLl~lL~~~~~p~-~~l~~l~s~~s~G~~~~----~~~~~--------------------~~v~-~~d-- 95 (279)
|+|+||-||.+-++.+.++ |+ ++++.++..+....... |.-+. ..+. ..+
T Consensus 1 ILGsTGSIG~qtLdVi~~~--~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~~~~~v~~G~~~l 78 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAH--PEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSANTSKITYGTDGL 78 (383)
T ss_pred CCccccHHHHHHHHHHHhC--ccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccCCCcEEEECHHHH
Confidence 6899999999999998876 54 89998876554332111 10000 1111 000
Q ss_pred --ccCCCCCcEEEecCCCchhhhhHHHHHhCCCEE
Q 023678 96 --EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIV 128 (279)
Q Consensus 96 --~~~~~~~DvVf~a~g~~~s~~~~~~~~~aG~~V 128 (279)
.....++|+|+.|.-....-+-.-.++++|..|
T Consensus 79 ~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~i 113 (383)
T PRK12464 79 IAVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDI 113 (383)
T ss_pred HHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcE
Confidence 012246899999977666655556677888764
No 474
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.11 E-value=1.3 Score=38.84 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=23.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDF 64 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~ 64 (279)
..+|.|.||+|.+|+.+++.|.++++
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~g~ 31 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKEGS 31 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC
Confidence 46899999999999999999998754
No 475
>PRK08017 oxidoreductase; Provisional
Probab=87.08 E-value=1.2 Score=39.03 Aligned_cols=30 Identities=23% Similarity=0.365 Sum_probs=24.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
.+|.|.||+|.+|+.+++.|.++++ +++++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~---~v~~~ 32 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGY---RVLAA 32 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC---EEEEE
Confidence 4699999999999999999998753 45444
No 476
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=87.00 E-value=1.4 Score=42.25 Aligned_cols=93 Identities=20% Similarity=0.190 Sum_probs=51.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEE--eecC-c---cC--CCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV--EELT-E---DS--FDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v--~~~d-~---~~--~~~~DvVf~a~g 110 (279)
..+|.|+||+|-||...++++... ....++...|.+... ....-+.+..+ .+.+ . .. ..++|+||.|.+
T Consensus 158 g~~vLv~ggsggVG~~aiQlAk~~--~~~~v~t~~s~e~~~-l~k~lGAd~vvdy~~~~~~e~~kk~~~~~~DvVlD~vg 234 (347)
T KOG1198|consen 158 GKSVLVLGGSGGVGTAAIQLAKHA--GAIKVVTACSKEKLE-LVKKLGADEVVDYKDENVVELIKKYTGKGVDVVLDCVG 234 (347)
T ss_pred CCeEEEEeCCcHHHHHHHHHHHhc--CCcEEEEEcccchHH-HHHHcCCcEeecCCCHHHHHHHHhhcCCCccEEEECCC
Confidence 478999999999999999988765 324444444433211 11111111111 1111 0 11 347999999999
Q ss_pred CchhhhhHHHHHhCCC-EEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGS-IVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~-~VIDlS~~ 134 (279)
..........+...|- .+|-+.++
T Consensus 235 ~~~~~~~~~~l~~~g~~~~i~~~~~ 259 (347)
T KOG1198|consen 235 GSTLTKSLSCLLKGGGGAYIGLVGD 259 (347)
T ss_pred CCccccchhhhccCCceEEEEeccc
Confidence 8655444544444432 24434443
No 477
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=86.99 E-value=1.4 Score=40.73 Aligned_cols=72 Identities=10% Similarity=0.124 Sum_probs=39.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCC-CCceeeeC-CceeEEeec---C--ccCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS-AGKQLSFQ-DKAYTVEEL---T--EDSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s-~G~~~~~~-~~~~~v~~~---d--~~~~~~~DvVf~a~g~ 111 (279)
..+|.|+|| |-+|+.++..|.+.+. .++..+ .|.. ..+.+... .....+..+ + .....++|+|+.|++.
T Consensus 125 ~k~vlvlGa-GGaarai~~aL~~~G~--~~i~I~-nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~ 200 (282)
T TIGR01809 125 GFRGLVIGA-GGTSRAAVYALASLGV--TDITVI-NRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA 200 (282)
T ss_pred CceEEEEcC-cHHHHHHHHHHHHcCC--CeEEEE-eCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence 368999995 8888999999987743 344444 3321 11122110 000111111 1 1223578999999998
Q ss_pred chh
Q 023678 112 SIS 114 (279)
Q Consensus 112 ~~s 114 (279)
+..
T Consensus 201 g~~ 203 (282)
T TIGR01809 201 DVP 203 (282)
T ss_pred CCC
Confidence 753
No 478
>PRK06114 short chain dehydrogenase; Provisional
Probab=86.94 E-value=2.8 Score=37.05 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=25.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
...+.|.|++|.+|+.+.+.|.++++ +++.+
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~G~---~v~~~ 38 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQAGA---DVALF 38 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC---EEEEE
Confidence 45899999999999999999998753 55544
No 479
>PRK06500 short chain dehydrogenase; Provisional
Probab=86.89 E-value=0.82 Score=39.94 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~---~v~~~ 36 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAEGA---RVAIT 36 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC---EEEEe
Confidence 46899999999999999999998753 44444
No 480
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=86.83 E-value=4.5 Score=38.40 Aligned_cols=92 Identities=15% Similarity=0.053 Sum_probs=63.3
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEee-cC-ccCCCCCcEEEecCCCchhhhh
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LT-EDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~-~d-~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
.||.|-|-||.-|+--.+...+- ..+++.-.++...|+.+...+ +.+.+ +. ...-.++|+++.++|.....+.
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y---gt~iv~GV~Pgkgg~~v~~~G--vpvy~sv~ea~~~~~~D~avI~VPa~~v~da 104 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY---GTKMVGGVNPKKAGTTHLKHG--LPVFATVKEAKKATGADASVIYVPPPHAASA 104 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh---CCcEEEEECCCCCCceEecCC--ccccCCHHHHhcccCCCEEEEecCHHHHHHH
Confidence 69999999999999988888765 345666666665555443111 22221 11 0111248999999999999999
Q ss_pred HHHHHhCCCE-EEEcCCCCC
Q 023678 118 GPIAVEKGSI-VVDNSSAFR 136 (279)
Q Consensus 118 ~~~~~~aG~~-VIDlS~~~R 136 (279)
+.++.++|++ +|=.|+-|.
T Consensus 105 i~Ea~~aGI~~~ViiteGfp 124 (317)
T PTZ00187 105 IIEAIEAEIPLVVCITEGIP 124 (317)
T ss_pred HHHHHHcCCCEEEEECCCCc
Confidence 9999999995 344677663
No 481
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.82 E-value=1.4 Score=40.45 Aligned_cols=90 Identities=17% Similarity=0.085 Sum_probs=49.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ec-Cc----cCC--CCCcEEEecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--EL-TE----DSF--DGVDIALFSA 109 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~-d~----~~~--~~~DvVf~a~ 109 (279)
.-+|.|.||+|-+|..+++++...+ .+++...+....-..+...+.+..+. +. +. ... .++|++|.|+
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~G---~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~ 215 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLKG---CKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNV 215 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHcC---CEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECC
Confidence 4689999999999999999887664 34444432211000000011111111 10 00 011 3689999999
Q ss_pred CCchhhhhHHHHHhCCCEEEEcC
Q 023678 110 GGSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 110 g~~~s~~~~~~~~~aG~~VIDlS 132 (279)
|........ ..++.|.++|..+
T Consensus 216 G~~~~~~~~-~~l~~~G~iv~~G 237 (325)
T TIGR02825 216 GGEFSNTVI-GQMKKFGRIAICG 237 (325)
T ss_pred CHHHHHHHH-HHhCcCcEEEEec
Confidence 876554433 4456666666664
No 482
>PRK07102 short chain dehydrogenase; Provisional
Probab=86.78 E-value=0.73 Score=40.40 Aligned_cols=30 Identities=7% Similarity=0.201 Sum_probs=25.0
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
++|.|.||||.+|+.+++.|.++++ +++++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~---~Vi~~ 31 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA---RLYLA 31 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC---EEEEE
Confidence 5799999999999999999998754 44444
No 483
>PRK09414 glutamate dehydrogenase; Provisional
Probab=86.74 E-value=4.2 Score=40.33 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=55.2
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCC--------------cee-EE------eecC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD--------------KAY-TV------EELT 95 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~--------------~~~-~v------~~~d 95 (279)
.+..||+|.| .|.||+.+.+.|.+. ..+++.++.. .|--+...+ ..+ .+ ...+
T Consensus 230 l~g~rVaIqG-fGnVG~~~A~~L~~~---GakVVavsDs--~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~ 303 (445)
T PRK09414 230 FEGKRVVVSG-SGNVAIYAIEKAQQL---GAKVVTCSDS--SGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLE 303 (445)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHC---CCEEEEEEcC--CceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecC
Confidence 3468999999 799999999999875 4577777432 222111000 000 00 0112
Q ss_pred cc-CC-CCCcEEEecC-CCchhhhhHHHHHhCCCEEEE
Q 023678 96 ED-SF-DGVDIALFSA-GGSISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 96 ~~-~~-~~~DvVf~a~-g~~~s~~~~~~~~~aG~~VID 130 (279)
.+ .| .+|||++-|+ +..+..+.+.++.+.+|++|=
T Consensus 304 ~~~i~~~d~DVliPaAl~n~It~~~a~~i~~~~akiIv 341 (445)
T PRK09414 304 GGSPWSVPCDIALPCATQNELDEEDAKTLIANGVKAVA 341 (445)
T ss_pred CccccccCCcEEEecCCcCcCCHHHHHHHHHcCCeEEE
Confidence 22 23 3799998886 556778888888878898883
No 484
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.73 E-value=0.86 Score=40.27 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=25.7
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+.+.+.|.++++ +++.+
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~G~---~V~~~ 40 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQAGA---EVILN 40 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHcCC---EEEEE
Confidence 46899999999999999999998754 55444
No 485
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=86.72 E-value=3.2 Score=37.28 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEee
Q 023678 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLAS 74 (279)
Q Consensus 38 ~~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s 74 (279)
+.+||+|.| .|-||+.+++.|.+. ..+++.++.
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~~~---g~~vv~v~D 62 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLHEA---GAKVVAVSD 62 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHC---CCEEEEEEC
Confidence 468999999 899999999999875 467776653
No 486
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.67 E-value=2.9 Score=40.62 Aligned_cols=87 Identities=15% Similarity=0.176 Sum_probs=52.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCC-c----eeeeCCceeEEeecCccCCC-CCcEEEecCCCc
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAG-K----QLSFQDKAYTVEELTEDSFD-GVDIALFSAGGS 112 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G-~----~~~~~~~~~~v~~~d~~~~~-~~DvVf~a~g~~ 112 (279)
..+|.|+|+.| +|....+.|.++|+ ++... .++... . .+...+..+.........+. +.|+|+...+-.
T Consensus 5 ~k~v~v~G~g~-~G~s~a~~l~~~G~---~V~~~-d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~ 79 (447)
T PRK02472 5 NKKVLVLGLAK-SGYAAAKLLHKLGA---NVTVN-DGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIP 79 (447)
T ss_pred CCEEEEEeeCH-HHHHHHHHHHHCCC---EEEEE-cCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCC
Confidence 46899999876 99999999998754 43333 322211 0 01111111111111111123 389999988766
Q ss_pred hhhhhHHHHHhCCCEEEE
Q 023678 113 ISKKFGPIAVEKGSIVVD 130 (279)
Q Consensus 113 ~s~~~~~~~~~aG~~VID 130 (279)
.......++.+.|+.|+.
T Consensus 80 ~~~~~~~~a~~~~i~v~~ 97 (447)
T PRK02472 80 YTNPMVEKALEKGIPIIT 97 (447)
T ss_pred CCCHHHHHHHHCCCcEEe
Confidence 667788889999999883
No 487
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=86.53 E-value=1.3 Score=42.27 Aligned_cols=78 Identities=5% Similarity=0.055 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCCCceEEEEEeecCCCC------ceeeeCCceeEEeecCccCCCCCcEEEecCCCch-hhhhHHHH-
Q 023678 50 AVGQEFLSVLSDRDFPYRSIKMLASKRSAG------KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI-SKKFGPIA- 121 (279)
Q Consensus 50 ~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G------~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~-s~~~~~~~- 121 (279)
|.|..+...|.+++| ++.++ +++... ..+...+ +.+.....+...++|+||+|+|... .++++..+
T Consensus 30 ~gG~~MA~~La~aG~---~V~v~-Dr~~~~l~~~~~~~l~~~G--i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~ 103 (342)
T PRK12557 30 YGGSRMAIEFAEAGH---DVVLA-EPNRSILSEELWKKVEDAG--VKVVSDDAEAAKHGEIHILFTPFGKKTVEIAKNIL 103 (342)
T ss_pred cCHHHHHHHHHhCCC---eEEEE-ECCHHHhhHHHHHHHHHCC--CEEeCCHHHHHhCCCEEEEECCCcHHHHHHHHHHH
Confidence 458888888888765 34444 332210 0011111 2222211233568999999999887 55665444
Q ss_pred --HhCCCEEEEcCC
Q 023678 122 --VEKGSIVVDNSS 133 (279)
Q Consensus 122 --~~aG~~VIDlS~ 133 (279)
+..|..|||.|+
T Consensus 104 ~~L~~g~IVId~ST 117 (342)
T PRK12557 104 PHLPENAVICNTCT 117 (342)
T ss_pred hhCCCCCEEEEecC
Confidence 356889999876
No 488
>PRK08703 short chain dehydrogenase; Provisional
Probab=86.47 E-value=1.3 Score=38.62 Aligned_cols=31 Identities=10% Similarity=0.320 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+++++.|.++++ +++.+
T Consensus 6 ~k~vlItG~sggiG~~la~~l~~~g~---~V~~~ 36 (239)
T PRK08703 6 DKTILVTGASQGLGEQVAKAYAAAGA---TVILV 36 (239)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHcCC---EEEEE
Confidence 46899999999999999999998754 45444
No 489
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=86.42 E-value=2.3 Score=36.99 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=49.1
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEe--ecCc------cCCCCCcEEEecCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE--ELTE------DSFDGVDIALFSAG 110 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~--~~d~------~~~~~~DvVf~a~g 110 (279)
..+|.|+|+.| +|+.+++++...+ .++..+.+....-..+...+....+. +.+. ....++|++|.|++
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~g---~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~ 210 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAAG---ARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVG 210 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHcC---CeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCC
Confidence 46899999999 9999999887663 34444432211000010001111111 1110 01246899999998
Q ss_pred CchhhhhHHHHHhCCCEEEEcCCC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNSSA 134 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS~~ 134 (279)
.....+..-+.+..+..+++++..
T Consensus 211 ~~~~~~~~~~~l~~~G~~v~~~~~ 234 (271)
T cd05188 211 GPETLAQALRLLRPGGRIVVVGGT 234 (271)
T ss_pred CHHHHHHHHHhcccCCEEEEEccC
Confidence 733333333445566667766653
No 490
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=86.40 E-value=1.5 Score=38.98 Aligned_cols=27 Identities=11% Similarity=0.227 Sum_probs=23.9
Q ss_pred CCCCEEEEECcCcHHHHHHHHHHHcCC
Q 023678 37 ESAPSVAVVGVTGAVGQEFLSVLSDRD 63 (279)
Q Consensus 37 ~~~~kVaIiGATG~VG~eLl~lL~~~~ 63 (279)
.+..++.|.||+|.+|+++.+.|.+++
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G 31 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEK 31 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCC
Confidence 445789999999999999999999874
No 491
>PRK08223 hypothetical protein; Validated
Probab=86.40 E-value=3.6 Score=38.47 Aligned_cols=96 Identities=16% Similarity=0.230 Sum_probs=55.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe---------------ecCCCCceeee--------CCceeEEe---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA---------------SKRSAGKQLSF--------QDKAYTVE--- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~---------------s~~s~G~~~~~--------~~~~~~v~--- 92 (279)
..||+|+|+ |-+|.+++..|..-|.- ++.++- +.+..|+.-.. .+..+.+.
T Consensus 27 ~s~VlIvG~-GGLGs~va~~LA~aGVG--~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~ 103 (287)
T PRK08223 27 NSRVAIAGL-GGVGGIHLLTLARLGIG--KFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP 103 (287)
T ss_pred cCCEEEECC-CHHHHHHHHHHHHhCCC--eEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence 458999995 88899999999877443 333331 11122321110 01122232
Q ss_pred -ecCcc----CCCCCcEEEecCCCc--hhhhhH-HHHHhCCCEEEEcCCCCCCC
Q 023678 93 -ELTED----SFDGVDIALFSAGGS--ISKKFG-PIAVEKGSIVVDNSSAFRMV 138 (279)
Q Consensus 93 -~~d~~----~~~~~DvVf~a~g~~--~s~~~~-~~~~~aG~~VIDlS~~~R~~ 138 (279)
.++.+ .+.++|+|+.|++.- .++.++ ..+.+.|+.+|.. +.+.+.
T Consensus 104 ~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~-~~~g~~ 156 (287)
T PRK08223 104 EGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA-APLGMG 156 (287)
T ss_pred cccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE-eccCCe
Confidence 12222 246899999999863 454444 4557889988864 345544
No 492
>PRK06194 hypothetical protein; Provisional
Probab=86.30 E-value=0.82 Score=41.15 Aligned_cols=31 Identities=10% Similarity=0.248 Sum_probs=25.5
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
+.+|.|.||+|.+|+++.+.|.++++ +++++
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~G~---~V~~~ 36 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAALGM---KLVLA 36 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCCC---EEEEE
Confidence 46899999999999999999998753 44444
No 493
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=86.27 E-value=3.1 Score=38.82 Aligned_cols=91 Identities=14% Similarity=0.065 Sum_probs=50.3
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEe--ecCc----cCCCCCcEEEecCCC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVE--ELTE----DSFDGVDIALFSAGG 111 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~--~~d~----~~~~~~DvVf~a~g~ 111 (279)
.-+|.|+|+ |-+|...++++...+. .+++++. ++.....+. .-+.+..+. +.+. ....++|+||.|+|.
T Consensus 170 g~~VlV~G~-G~vG~~aiqlak~~G~--~~Vi~~~-~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~ 245 (343)
T PRK09880 170 GKRVFVSGV-GPIGCLIVAAVKTLGA--AEIVCAD-VSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGH 245 (343)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCC--cEEEEEe-CCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCC
Confidence 468999996 9999999998876632 2333332 221100000 011111111 1110 111248999999998
Q ss_pred chhhhhHHHHHhCCCEEEEcCC
Q 023678 112 SISKKFGPIAVEKGSIVVDNSS 133 (279)
Q Consensus 112 ~~s~~~~~~~~~aG~~VIDlS~ 133 (279)
..+.+.+-++++.|-++|..+.
T Consensus 246 ~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 246 PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred HHHHHHHHHHhhcCCEEEEEcc
Confidence 6555555566777777776653
No 494
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=86.23 E-value=1.2 Score=42.93 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=30.4
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecC
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKR 76 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~ 76 (279)
++|+.|+|+||-+|.+-|+.+.+++ ..++++.++..+
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p-~~f~vval~ag~ 37 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNP-DKFEVVALAAGK 37 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCC-CcEEEEEEecCC
Confidence 4689999999999999999998873 337888886544
No 495
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=86.23 E-value=5 Score=38.41 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=54.9
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEe----ecC-----------CCCceeee--------CCceeEEe---
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA----SKR-----------SAGKQLSF--------QDKAYTVE--- 92 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~----s~~-----------s~G~~~~~--------~~~~~~v~--- 92 (279)
..||.|+|+ |-+|.++++.|...|...+ .++. ..+ ..|++-.. ....+.+.
T Consensus 28 ~~~VlivG~-GGlGs~~a~~La~~Gvg~i--~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~ 104 (355)
T PRK05597 28 DAKVAVIGA-GGLGSPALLYLAGAGVGHI--TIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV 104 (355)
T ss_pred CCeEEEECC-CHHHHHHHHHHHHcCCCeE--EEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence 468999995 8889999999988755433 3331 111 12221110 01122222
Q ss_pred -ecCc----cCCCCCcEEEecCCCchhhhhHHHH-HhCCCEEEEc
Q 023678 93 -ELTE----DSFDGVDIALFSAGGSISKKFGPIA-VEKGSIVVDN 131 (279)
Q Consensus 93 -~~d~----~~~~~~DvVf~a~g~~~s~~~~~~~-~~aG~~VIDl 131 (279)
.++. +.+.++|+|+.|++...++.++..+ .+.|+.+|..
T Consensus 105 ~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~ 149 (355)
T PRK05597 105 RRLTWSNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWA 149 (355)
T ss_pred eecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 2222 2247899999999998888766555 5678887743
No 496
>PRK08324 short chain dehydrogenase; Validated
Probab=86.12 E-value=2 Score=44.47 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=25.6
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEE
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML 72 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l 72 (279)
..+|.|.||+|.+|+.+++.|.++++ +++++
T Consensus 422 gk~vLVTGasggIG~~la~~L~~~Ga---~Vvl~ 452 (681)
T PRK08324 422 GKVALVTGAAGGIGKATAKRLAAEGA---CVVLA 452 (681)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCcC---EEEEE
Confidence 36899999999999999999998753 45444
No 497
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=86.12 E-value=2.1 Score=40.84 Aligned_cols=89 Identities=13% Similarity=0.231 Sum_probs=53.2
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceee-eCCceeEEeecCccCCCCCcEEEecCCCchhhhh
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-FQDKAYTVEELTEDSFDGVDIALFSAGGSISKKF 117 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~-~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~ 117 (279)
..+|+||| .|.+|+.+.+.|...++ ++.... ++....... ..+ ..+.++ .+.+..+|+|+.++|...++..
T Consensus 16 gKtVGIIG-~GsIG~amA~nL~d~G~---~ViV~~-r~~~s~~~A~~~G--~~v~sl-~Eaak~ADVV~llLPd~~t~~V 87 (335)
T PRK13403 16 GKTVAVIG-YGSQGHAQAQNLRDSGV---EVVVGV-RPGKSFEVAKADG--FEVMSV-SEAVRTAQVVQMLLPDEQQAHV 87 (335)
T ss_pred cCEEEEEe-EcHHHHHHHHHHHHCcC---EEEEEE-CcchhhHHHHHcC--CEECCH-HHHHhcCCEEEEeCCChHHHHH
Confidence 46899999 79999999999987654 444443 221111100 111 122222 2345689999999998666655
Q ss_pred HH-HH---HhCCCEEEEcCCCCC
Q 023678 118 GP-IA---VEKGSIVVDNSSAFR 136 (279)
Q Consensus 118 ~~-~~---~~aG~~VIDlS~~~R 136 (279)
.. .. ++.|+.++ .|.-|-
T Consensus 88 ~~~eil~~MK~GaiL~-f~hgfn 109 (335)
T PRK13403 88 YKAEVEENLREGQMLL-FSHGFN 109 (335)
T ss_pred HHHHHHhcCCCCCEEE-ECCCcc
Confidence 43 22 24566554 676663
No 498
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=86.10 E-value=3.1 Score=38.85 Aligned_cols=111 Identities=21% Similarity=0.328 Sum_probs=67.0
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeeeCCceeEEeecCccCCCCCcEEEecCCCchhhhhH
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFG 118 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~~~~~~~v~~~d~~~~~~~DvVf~a~g~~~s~~~~ 118 (279)
..++.|||.+..||+=|..+|.+. ...+....|+. + ++ .+....+|+++.|.|-..- +-
T Consensus 156 Gk~~vVVGrS~iVGkPla~lL~~~---naTVtvcHs~T---~------------~l-~~~~k~ADIvv~AvG~p~~--i~ 214 (283)
T COG0190 156 GKNVVVVGRSNIVGKPLALLLLNA---NATVTVCHSRT---K------------DL-ASITKNADIVVVAVGKPHF--IK 214 (283)
T ss_pred CCEEEEECCCCcCcHHHHHHHHhC---CCEEEEEcCCC---C------------CH-HHHhhhCCEEEEecCCccc--cc
Confidence 579999999999999999999874 33433332211 1 00 1223678999999885311 11
Q ss_pred HHHHhCCCEEEEcCCCCCCCCCCceeeccCCHHhhhccccCCCCCcEEECC---CChHHHHHH
Q 023678 119 PIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMGKGALIANP---NCSTIICLM 178 (279)
Q Consensus 119 ~~~~~aG~~VIDlS~~~R~~~~vplvvPevN~~~i~~~~~~~~~~~iVanP---gC~tt~l~l 178 (279)
....+.|+.|||..-. |.++. -.+-.|+.+..+.. ...+--.| |-.|++|++
T Consensus 215 ~d~vk~gavVIDVGin-rv~~~--kl~GDVdf~~v~~~-----a~~iTPVPGGVGPmTvamLl 269 (283)
T COG0190 215 ADMVKPGAVVIDVGIN-RVNDG--KLVGDVDFDSVKEK-----ASAITPVPGGVGPMTVAMLL 269 (283)
T ss_pred cccccCCCEEEecCCc-cccCC--ceEeeccHHHHHHh-----hcccCCCCCccCHHHHHHHH
Confidence 2445789999998654 44331 23456676655531 23344566 445555554
No 499
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=86.05 E-value=6.7 Score=34.45 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCEEEEECcCcHHHHHHHHHHHcCCCCce
Q 023678 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYR 67 (279)
Q Consensus 39 ~~kVaIiGATG~VG~eLl~lL~~~~~p~~ 67 (279)
..||+|+|+ |-+|..+...|...|+..+
T Consensus 21 ~~~V~IvG~-GglGs~ia~~La~~Gvg~i 48 (200)
T TIGR02354 21 QATVAICGL-GGLGSNVAINLARAGIGKL 48 (200)
T ss_pred CCcEEEECc-CHHHHHHHHHHHHcCCCEE
Confidence 468999996 8899999999998865433
No 500
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=86.00 E-value=1.7 Score=40.06 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=49.7
Q ss_pred CEEEEECcCcHHHHHHHHHHHcCCCCceEEEEEeecCCCCceeee-CCceeEEe--ecCc-c---CC--CCCcEEEecCC
Q 023678 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF-QDKAYTVE--ELTE-D---SF--DGVDIALFSAG 110 (279)
Q Consensus 40 ~kVaIiGATG~VG~eLl~lL~~~~~p~~~l~~l~s~~s~G~~~~~-~~~~~~v~--~~d~-~---~~--~~~DvVf~a~g 110 (279)
-+|.|.||+|-+|..+++++...+. .+++.+.+.......+.. -+.+..+. +.+. + .+ .++|++|.|++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~--~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g 233 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGC--SRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVG 233 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCC--CEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCC
Confidence 5899999999999999988776532 144444332111011100 11111111 1110 0 01 47999999998
Q ss_pred CchhhhhHHHHHhCCCEEEEcC
Q 023678 111 GSISKKFGPIAVEKGSIVVDNS 132 (279)
Q Consensus 111 ~~~s~~~~~~~~~aG~~VIDlS 132 (279)
.....+.. ..+..|.++|+.+
T Consensus 234 ~~~~~~~~-~~l~~~G~iv~~G 254 (345)
T cd08293 234 GEISDTVI-SQMNENSHIILCG 254 (345)
T ss_pred cHHHHHHH-HHhccCCEEEEEe
Confidence 76554443 4556666667664
Done!