RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 023678
(279 letters)
>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural
genomics; 2.70A {Thermus thermophilus}
Length = 331
Score = 386 bits (994), Expect = e-136
Identities = 109/223 (48%), Positives = 140/223 (62%), Gaps = 7/223 (3%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG+E L VL R+FP +++ AS RSAG +L+F+ + VE L E
Sbjct: 3 VAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLPEGPL-P 61
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VD+ L SAGG IS+ + E G++VVDNSSA+R VPLV+PEVN E + +
Sbjct: 62 VDLVLASAGGGISRAKALVWAEGGALVVDNSSAWRYEPWVPLVVPEVNREKIFQHR---- 117
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNC+T I MA PLHR + R++V+TYQAASGAGA AMEEL +T L G
Sbjct: 118 --GIIANPNCTTAILAMALWPLHRAFQAKRVIVATYQAASGAGAKAMEELLTETHRFLHG 175
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
+ P + F+ FN+ H ENGY EEMK+V ET KI+
Sbjct: 176 EAPKAEAFAHPLPFNVIPHIDAFQENGYTREEMKVVWETHKIF 218
>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change,
half-OF-sites-reactivity, protein evolution, sequence
homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A*
2r00_C*
Length = 336
Score = 380 bits (978), Expect = e-133
Identities = 106/223 (47%), Positives = 144/223 (64%), Gaps = 4/223 (1%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VA+ G TGAVG+ L VL +R+FP + +LAS+RS GK F K V+ + E +
Sbjct: 6 VAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQ 65
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V IALFSAGG +S K+ PIA E G +V+DN+S FR ++PLV+PEVNPEA++ +
Sbjct: 66 VHIALFSAGGELSAKWAPIAAEAGVVVIDNTSHFRYDYDIPLVVPEVNPEAIAEFR---- 121
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEG 221
+IANPNCSTI L+A P++ + R+ V+TYQ+ SGAG A ++EL QT ++L G
Sbjct: 122 NRNIIANPNCSTIQMLVALKPIYDAVGIERINVTTYQSVSGAGKAGIDELAGQTAKLLNG 181
Query: 222 KPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
P FSQQ AFN ++NGY +EEMKMV ET+KI+
Sbjct: 182 YPAETNTFSQQIAFNCIPQIDQFMDNGYTKEEMKMVWETQKIF 224
>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase,
probable hydrolase, PS aeruginosa, structurual genomics;
2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1
Length = 340
Score = 379 bits (975), Expect = e-133
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 8/233 (3%)
Query: 32 RMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV 91
MS +VAVVG TG+VG+ + +L +RDFP + +LAS SAG+++ F + + V
Sbjct: 2 HMS---QPLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV 58
Query: 92 EELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
++ F V +A F+A +S+ A G V+D S A P V+ VN E
Sbjct: 59 GDVDSFDFSSVGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEP-SVAPPVMVSVNAE 117
Query: 152 AMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEEL 211
++ L+++P PL ++ ++ + S G ++EL
Sbjct: 118 RLASQA----APFLLSSPCAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKEL 173
Query: 212 ELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
QT E+L +P ++F +Q AFNL + V G++ E ++ E + +
Sbjct: 174 ARQTAELLNARPLEPRLFDRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALL 226
>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding,
oxidoreductase-oxidoreductase I complex; HET: 25A L14;
1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A*
2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A*
3q1l_A
Length = 366
Score = 374 bits (964), Expect = e-131
Identities = 108/243 (44%), Positives = 140/243 (57%), Gaps = 22/243 (9%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
M Y +VAVVG TGAVG + + +L + P I+ LAS RSAGK L F+D+ T+E
Sbjct: 1 MGY-----TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIE 55
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
E TE +F+GVDIALFSAG S S K+ P AV+ G +VVDN+S FR +VPLV+PEVN A
Sbjct: 56 ETTETAFEGVDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHA 115
Query: 153 MSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELE 212
+ +IA PNCSTI ++A P+ ++ + R++VSTYQA SGAG A+ E +
Sbjct: 116 LDAHN------GIIACPNCSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQ 169
Query: 213 LQTREVLEGK-----------PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETR 261
+ REVL P AFN +N Y EEMKM KET+
Sbjct: 170 RELREVLNDGVKPCDLHAEILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETK 229
Query: 262 KIW 264
KI
Sbjct: 230 KIM 232
>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid
biosynthesis, diaminopimelate biosynthesis, lysine
biosynthesis; HET: SO4; 1.95A {Mycobacterium
tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A
Length = 344
Score = 369 bits (949), Expect = e-129
Identities = 91/239 (38%), Positives = 134/239 (56%), Gaps = 17/239 (7%)
Query: 39 APSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS 98
S+ +VG TG VGQ ++L +RDFP +++ AS RS G++L+F+ + VE+
Sbjct: 1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLAFRGQEIEVEDAETAD 60
Query: 99 FDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV 158
G+DIALFSAG ++SK P G V+DNSSA+R +VPLV+ EVN E + +
Sbjct: 61 PSGLDIALFSAGSAMSKVQAPRFAAAGVTVIDNSSAWRKDPDVPLVVSEVNFERDAHRR- 119
Query: 159 GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREV 218
KG +IANPNC+T+ + LH A++ R+VVS+YQA SG+G A + EL Q R V
Sbjct: 120 --PKG-IIANPNCTTMAAMPVLKVLHDEARLVRLVVSSYQAVSGSGLAGVAELAEQARAV 176
Query: 219 LEGKP-----------PTCKIFSQQYAFNLFSHNAPVLENGYNE--EEMKMVKETRKIW 264
+ G P + AFN+ ++++G E E+ K+ E+RKI
Sbjct: 177 IGGAEQLVYDGGALEFPPPNTYVAPIAFNVVPLAGSLVDDGSGETDEDQKLRFESRKIL 235
>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle
structural genomics center for infectious disease
(ssgcid); 1.55A {Burkholderia thailandensis}
Length = 377
Score = 329 bits (845), Expect = e-113
Identities = 65/256 (25%), Positives = 95/256 (37%), Gaps = 31/256 (12%)
Query: 38 SAPSVAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE 96
+ +V +VG G VG + + + DF ++ + GK SF T+++ T
Sbjct: 3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTLKDATS 62
Query: 97 -DSFDGVDIALFSAGGSISKKFGPIAVEKGS--IVVDNSSAFRMVENVPLVIPEVNPEAM 153
D D+ + GG + P G +D +S+ RM ++ +++ VN +
Sbjct: 63 IDDLKKCDVIITCQGGDYTNDVFPKLRAAGWNGYWIDAASSLRMKDDAVIILDPVNLNVI 122
Query: 154 SGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELEL 213
V G NC+ + LMA L R V M TYQAASGAGA M EL
Sbjct: 123 KDALVN-GTK-NFIGGNCTVSLMLMALGGLFRENLVDWMTAMTYQAASGAGAQNMRELLA 180
Query: 214 QTREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENG 248
Q + + G F A +L L NG
Sbjct: 181 QMGTLNGAVAAQLADPASAILDIDRRVLAAMNGDAMPTSQFGVPLAGSLIPWIDKDLGNG 240
Query: 249 YNEEEMKMVKETRKIW 264
+ EE K ET KI
Sbjct: 241 MSREEWKGGAETNKIL 256
>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP,
oxidoreductase-oxidoreductase inhibitor complex; HET:
NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A
Length = 370
Score = 320 bits (823), Expect = e-109
Identities = 62/253 (24%), Positives = 95/253 (37%), Gaps = 33/253 (13%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSF 99
V +VG G VG + ++ +RDF ++ + +F A + + +S
Sbjct: 3 VGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+D + GGS ++K P + G +D +S RM + + + VN + I
Sbjct: 63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQ---IL 119
Query: 158 VGMGKGA-LIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTR 216
G+ G NC+ + LMA L+ R V M TYQAASGAGA M EL Q
Sbjct: 120 HGIHHGTKTFVGGNCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMG 179
Query: 217 EV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNE 251
+ + F A +L +NG ++
Sbjct: 180 VINDAVSSELANPASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSK 239
Query: 252 EEMKMVKETRKIW 264
EE K E KI
Sbjct: 240 EEWKAGVEANKIL 252
>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine
biosynthesis, NADP+ oxidoreductase (phosphorylating),
domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3
d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A
1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A*
1pu2_A* 1q2x_A*
Length = 367
Score = 319 bits (819), Expect = e-109
Identities = 60/255 (23%), Positives = 98/255 (38%), Gaps = 33/255 (12%)
Query: 40 PSVAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-D 97
+V +G G VG + ++ +RDF ++ + SF T+++ + +
Sbjct: 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLE 61
Query: 98 SFDGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ +DI + GG + + P E G +D +S+ RM ++ +++ VN +
Sbjct: 62 ALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDV--- 118
Query: 156 IKVGMGKG-ALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQ 214
I G+ G NC+ + LM+ L V + V+TYQAASG GA M EL Q
Sbjct: 119 ITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQ 178
Query: 215 TREV-------------------------LEGKPPTCKIFSQQYAFNLFSHNAPVLENGY 249
+ F A +L L+NG
Sbjct: 179 MGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQ 238
Query: 250 NEEEMKMVKETRKIW 264
+ EE K ET KI
Sbjct: 239 SREEWKGQAETNKIL 253
>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase;
oxidoreductase, structural genomics, NPPSFA; 2.40A
{Sulfolobus tokodaii}
Length = 350
Score = 265 bits (679), Expect = 4e-88
Identities = 60/256 (23%), Positives = 107/256 (41%), Gaps = 44/256 (17%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQ------------LSFQDKAY 89
V+++G TG VGQ+ + +L+ + +K+ AS GK+ + + +
Sbjct: 7 VSLLGSTGMVGQKMVKMLAKHPY-LELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDL 65
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVN 149
+ + VD+ L + +++ V+ G IVV N+S FRM +VPL+ PE+N
Sbjct: 66 PIVSTNYEDHKDVDVVLSALPNELAESIELELVKNGKIVVSNASPFRMDPDVPLINPEIN 125
Query: 150 PEAMSGIKV----GMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGA 205
E + +K KG L+ NPNC+ I M PL A ++++++T QA SGAG
Sbjct: 126 WEHLELLKFQKERKGWKGILVKNPNCTAAIMSMPIKPLIEIATKSKIIITTLQAVSGAGY 185
Query: 206 AAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMV--KETRKI 263
+ + + N+ + E+ +E K+ E +I
Sbjct: 186 NGISFMAI--------------------EGNIIPYI-KGEEDKIAKELTKLNGKLENNQI 224
Query: 264 WVSFKMNFFVSPCSCN 279
N + +
Sbjct: 225 ---IPANLDST-VTSI 236
>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET:
NAP; 2.29A {Methanocaldococcus jannaschii}
Length = 354
Score = 256 bits (656), Expect = 1e-84
Identities = 78/277 (28%), Positives = 121/277 (43%), Gaps = 59/277 (21%)
Query: 27 MFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRSAGKQLSFQ 85
M +M V V+G TG+VGQ F+ +L+D P + L AS+RSAGK+
Sbjct: 1 MSKGEKMKI-----KVGVLGATGSVGQRFVQLLADH--PMFELTALAASERSAGKKYKDA 53
Query: 86 DKAYTVEELTE--------------DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDN 131
+ ++ E + F+ VDI + ++KKF P ++G ++ N
Sbjct: 54 CYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVFSALPSDLAKKFEPEFAKEGKLIFSN 113
Query: 132 SSAFRMVENVPLVIPEVNPEAMSGIKVGMG----KGALIANPNCSTIICLMAATPLHRRA 187
+SA+RM E+VPLVIPEVN + + I++ GA+I NPNCSTI ++ P+ +
Sbjct: 114 ASAYRMEEDVPLVIPEVNADHLELIEIQREKRGWDGAIITNPNCSTICAVITLKPIMDKF 173
Query: 188 KVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYAFNLFSHNAPVLEN 247
+ + ++T QA SGAG + + + NL
Sbjct: 174 GLEAVFIATMQAVSGAGYNGVPSMAI--------------------LDNLIPF------- 206
Query: 248 GYNEEEMKMVKETRKIWVSFKMNFFVSP-----CSCN 279
EE KM E+ K+ + K SCN
Sbjct: 207 -IKNEEEKMQTESLKLLGTLKDGKVELANFKISASCN 242
>3hsk_A Aspartate-semialdehyde dehydrogenase; candida albicans NADP
complex, amino-acid biosynthesis; HET: NAP; 2.20A
{Candida albicans}
Length = 381
Score = 251 bits (643), Expect = 3e-82
Identities = 67/270 (24%), Positives = 104/270 (38%), Gaps = 58/270 (21%)
Query: 20 NKPRTKPMFTR-VRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKML-ASKRS 77
+ + + R MS V+G TG+VGQ F+ +LS P I L AS RS
Sbjct: 3 HHHHSSGLVPRGSHMS----VKKAGVLGATGSVGQRFILLLSKH--PEFEIHALGASSRS 56
Query: 78 AGKQLSF------------QDKAYTVEELTED-SFDGVDIALFSAGGSISKKFGPIAVEK 124
AGK+ ++ V+E + +F D+ ++ VE
Sbjct: 57 AGKKYKDAASWKQTETLPETEQDIVVQECKPEGNFLECDVVFSGLDADVAGDIEKSFVEA 116
Query: 125 GSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKV---------GMGKGALIANPNCSTII 175
G VV N+ +R ++VPLV+P VNPE + ++ G G +I NCST
Sbjct: 117 GLAVVSNAKNYRREKDVPLVVPIVNPEHIDVVENKVKQAVSKGGKKPGFIICISNCSTAG 176
Query: 176 CLMAATPLHRR-AKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFSQQYA 234
+ PL + + + +T QA SGAG + +
Sbjct: 177 LVAPLKPLVEKFGPIDALTTTTLQAISGAGFSPG-------------------VSGMDIL 217
Query: 235 FNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
N+ + + EE K+ ET+KI
Sbjct: 218 DNIVPY--------ISGEEDKLEWETKKIL 239
>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate
aldolase; sequestered tunnel, substrate channeling; HET:
NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1
Length = 312
Score = 69.2 bits (169), Expect = 9e-14
Identities = 42/242 (17%), Positives = 85/242 (35%), Gaps = 31/242 (12%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA--SKRSAG----KQLSFQDKAYTVEEL 94
VA++G +G +G + + + R+ Y + + S G +++ VE L
Sbjct: 6 KVAIIG-SGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGL 63
Query: 95 TE-DSFDGVDIALF--SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPE 151
+ F +D SA + + + G ++D + A P +P VN E
Sbjct: 64 IKLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPAAIG----PYCVPVVNLE 119
Query: 152 AMSGIK-VGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEE 210
G V M + +TI + A + + + + + ++A A ++E
Sbjct: 120 EHLGKLNVNM-----VTCGGQATIPMVAAVSRVAKVHYAEIVASISSKSAGPGTRANIDE 174
Query: 211 LELQTREVLE--GKPPTCK---IFSQQYAFNLFSHNAPVLENGYNEEE-----MKMVKET 260
T + +E G K I + + VL ++ +MV+
Sbjct: 175 FTETTSKAIEVIGGAAKGKAIIIMNPAEPPLIMRDTVYVLSAAADQAAVAASVAEMVQAV 234
Query: 261 RK 262
+
Sbjct: 235 QA 236
>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid
biosynthesis, structural genomics, riken structur
genomics/proteomics initiative; 2.01A {Thermus
thermophilus}
Length = 345
Score = 57.2 bits (139), Expect = 1e-09
Identities = 41/200 (20%), Positives = 73/200 (36%), Gaps = 43/200 (21%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS--------FQDKAYTVE 92
++++VG +G G EFL + PY +K + S+R AG+ + + +
Sbjct: 6 TLSIVGASGYAGGEFLRLALSH--PYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFV-- 61
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFR---------------- 136
+ + DI + + + + ++VD S+ FR
Sbjct: 62 --PPEKLEPADILVLALPHGVFAREFDRYSALAPVLVDLSADFRLKDPELYRRYYGEHPR 119
Query: 137 --MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
++ +PE+ EA+ KGA IA C+ L+ PL K T
Sbjct: 120 PDLLGRFVYAVPELYREAL--------KGADWIAGAGCNATATLLGLYPLLKAGVLKPTP 171
Query: 192 MVVSTYQAASGAGAAAMEEL 211
+ V+ + S GA A
Sbjct: 172 IFVTLLISTSAGGAEASPAS 191
>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural
genomics, protein structure initiative, CENT eukaryotic
structural genomics; 2.19A {Arabidopsis thaliana} SCOP:
c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A
Length = 359
Score = 51.4 bits (124), Expect = 1e-07
Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 45/197 (22%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAY------TVEELT 95
+ ++G +G G E + +L++ P+ + ++ + R AG+ + T+ +
Sbjct: 19 IGLLGASGYTGAEIVRLLANH--PHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK 76
Query: 96 EDSFDGVDIALFSA---GGSISKKFGPIAVEKGSIVVDNSSAFR---------------- 136
+ F VD F G +++ + +VD S+ FR
Sbjct: 77 DADFSTVDAV-FCCLPHG--TTQEIIK-ELPTALKIVDLSADFRLRNIAEYEEWYGQPHK 132
Query: 137 ---MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVT 190
+ + V + E+ E + K A L+ANP C + PL K
Sbjct: 133 AVELQKEVVYGLTEILREDI--------KKARLVANPGCYPTTIQLPLVPLLKANLIKHE 184
Query: 191 RMVVSTYQAASGAGAAA 207
+++ SGAG A
Sbjct: 185 NIIIDAKSGVSGAGRGA 201
>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC,
essential gene, amino-acid biosynthesis, arginine
biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella
flexneri} PDB: 2g17_A
Length = 337
Score = 50.6 bits (122), Expect = 2e-07
Identities = 43/201 (21%), Positives = 68/201 (33%), Gaps = 44/201 (21%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRS---AGKQLS--------FQDKAY 89
+ +VG +G G E ++ ++ P+ +I L AGK +S +
Sbjct: 6 NTLIVGASGYAGAELVTYVNRH--PHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPL 63
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFR------------- 136
+ GVD+ + +S P +E G +V D S AFR
Sbjct: 64 QPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDLSGAFRVNDATFYEKYYGF 123
Query: 137 ------MVENVPLVIPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPLHRRAKV 189
++E + E + K A LIA P C +A PL +
Sbjct: 124 THQYPELLEQAAYGLAEWCGNKL--------KEANLIAVPGCYPTAAQLALKPLIDADLL 175
Query: 190 ---TRMVVSTYQAASGAGAAA 207
V++ SGAG A
Sbjct: 176 DLNQWPVINATSGVSGAGRKA 196
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.2 bits (111), Expect = 4e-06
Identities = 56/389 (14%), Positives = 107/389 (27%), Gaps = 146/389 (37%)
Query: 18 PANKPRTKPMFTRVRMSYQE--SAPSVAVVGVTGAVGQEFL--SVLSDRD----FPYR-- 67
N R +P + ++R + E A +V + GV G+ G+ ++ V ++
Sbjct: 128 KYNVSRLQP-YLKLRQALLELRPAKNVLIDGVLGS-GKTWVALDVCLSYKVQCKMDFKIF 185
Query: 68 ------------SIKMLAS----------------------KRSAGKQLS--FQDKAYT- 90
++ML S +L + K Y
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 91 -------VEELTE-DSFD-GVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENV 141
V+ ++F+ I L + ++ A + +S E
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISLDHHSMTLTPDEVK 304
Query: 142 PLV----------IPE----VNPEAMSGIKVGMGKGALIANPNC-------------STI 174
L+ +P NP +S I I + +TI
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSII------AESIRDGLATWDNWKHVNCDKLTTI 358
Query: 175 I--CLMAATP-LHRR-----------AKVTRMVVSTYQAASGAGAAAMEEL-ELQTREVL 219
I L P +R+ A + +++S + M + +L ++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV-IKSDVMVVVNKLHKYSLV 417
Query: 220 E--GKPPTCKIFS--------------------QQYAFNL-FSHN--APVLENGY----- 249
E K T I S Y F + P + Y
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477
Query: 250 -----NEEEMKMVKETRKIWVSFKMNFFV 273
N E + + R +++ F+ F+
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFR---FL 503
Score = 38.3 bits (88), Expect = 0.002
Identities = 22/160 (13%), Positives = 49/160 (30%), Gaps = 49/160 (30%)
Query: 14 ISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73
I T +F + S QE +V Q+F+ + ++ + L
Sbjct: 54 IIMSKDAVSGTLRLFWTLL-SKQEE-----MV-------QKFVEEVLRINYKF-----LM 95
Query: 74 SK-RSAGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132
S ++ +Q S + Y E + ++ + F V +
Sbjct: 96 SPIKTEQRQPSMMTRMY--IEQRDRLYNDNQV------------FAKYNVSR-------- 133
Query: 133 SAFRMVENVPLVIPEVNPEAMSGIKV-GM---GKGALIAN 168
+ + + E+ P + + G+ GK + +
Sbjct: 134 --LQPYLKLRQALLELRPA--KNVLIDGVLGSGKTWVALD 169
>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer,
rossmann fold, structural genomics, PSI, protein
structure initiative; 1.58A {Mycobacterium tuberculosis}
PDB: 2i3a_A* 2i3g_A
Length = 352
Score = 46.4 bits (111), Expect = 4e-06
Identities = 41/201 (20%), Positives = 64/201 (31%), Gaps = 42/201 (20%)
Query: 41 SVAVVGVTGAVGQEFLSVLS---DRDFPYRSIKMLASKRSAGKQLS--------FQDKAY 89
VAV G +G G E L +L I L + SAG L +
Sbjct: 11 KVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHR-- 68
Query: 90 TVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPL------ 143
VE G D + S + ++++D + FR+ + +
Sbjct: 69 VVEPTEAAVLGGHDAVFLALPHGHSAVLAQ-QLSPETLIIDCGADFRL-TDAAVWERFYG 126
Query: 144 -------V--IPEV--NPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPLHRRAKV-T 190
+PE+ + + +G IA P C L+A P +
Sbjct: 127 SSHAGSWPYGLPELPGARDQL--------RGTRRIAVPGCYPTAALLALFPALAADLIEP 178
Query: 191 RMVVSTYQAASGAGAAAMEEL 211
+ V SGAG AA +L
Sbjct: 179 AVTVVAVSGTSGAGRAATTDL 199
>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; 1.80A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.1
Length = 351
Score = 45.6 bits (109), Expect = 7e-06
Identities = 42/200 (21%), Positives = 72/200 (36%), Gaps = 46/200 (23%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLS-----FQDKAYTVEELTE 96
++G TG G E + +L + P I L+S+ AGK+L + + E E
Sbjct: 16 AGIIGATGYTGLELVRLLKNH--PEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 73
Query: 97 DSFDGVDIALFS----AGGSISKKFGPIAVEKGSIVVDNSSAFRM--------------- 137
D+ + A + ++ KG ++D + FR
Sbjct: 74 KVSKNCDVLFTALPAGASYDLVREL------KGVKIIDLGADFRFDDPGVYREWYGKELS 127
Query: 138 -VENVPLV--IPEVNPEAMSGIKVGMGKGA-LIANPNCSTIICLMAATPL--HRRAKVTR 191
EN+ V +PE++ E + K A ++ NP C ++A P H
Sbjct: 128 GYENIKRVYGLPELHREEI--------KNAQVVGNPGCYPTSVILALAPALKHNLVDPET 179
Query: 192 MVVSTYQAASGAGAAAMEEL 211
++V SGAG +
Sbjct: 180 ILVDAKSGVSGAGRKEKVDY 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 3e-04
Identities = 25/137 (18%), Positives = 45/137 (32%), Gaps = 42/137 (30%)
Query: 105 ALFSAGGSIS-----K------KFGPIAVEKGSIVVDNSSAFRMVENVP-LVIPEVNPEA 152
AL S +S + +AV + + S + M+ P V + EA
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL---GRSNYGMIAINPGRVAASFSQEA 1825
Query: 153 MSGI--KVGMGKGAL--IANPNCS--TIIC------LMAATPL-----HRRAKVTRMVVS 195
+ + +VG G L I N N + L T + ++ + + S
Sbjct: 1826 LQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKS 1885
Query: 196 TYQAASGAGAAAMEELE 212
++EE+E
Sbjct: 1886 L----------SLEEVE 1892
Score = 35.0 bits (80), Expect = 0.027
Identities = 29/139 (20%), Positives = 51/139 (36%), Gaps = 40/139 (28%)
Query: 50 AVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT---EDSFDGVDIAL 106
FL V S P+ S ++ + K L + ++ +++ D+FDG D+ +
Sbjct: 415 KFSNRFLPVAS----PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRV 470
Query: 107 FSAGGSISKK-------------------------FGPIAVEK-GSIVVDNS--SAFRMV 138
S GSIS++ FGP G + N + R++
Sbjct: 471 LS--GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 139 ENVPLVIPEVNPEAMSGIK 157
L ++NP+ G K
Sbjct: 529 VAGTL---DINPDDDYGFK 544
Score = 28.9 bits (64), Expect = 2.3
Identities = 31/142 (21%), Positives = 47/142 (33%), Gaps = 35/142 (24%)
Query: 4 FSSHQTQTHFISKLPA--------NKPRTKP-------MFTRVRMSYQESAPSVAVVGVT 48
F + Q Q F LP ++P T + S E + V
Sbjct: 28 FIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYV---SSLVEPSKVGQFDQVL 84
Query: 49 GAVGQEFLS-VLSDRDFPYRSIKMLASK---RSAGKQLSFQD--KAY-TVEELTEDSFDG 101
EF + L D I LA+K + + ++ K Y T + + FD
Sbjct: 85 NLCLTEFENCYLEGND-----IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK 139
Query: 102 V-DIALFSAGGSISKK----FG 118
+ ALF A G + + FG
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFG 161
>1xq6_A Unknown protein; structural genomics, protein structure initiative,
CESG, AT5G02240, NADP, center for eukaryotic structural
genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP:
c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*
Length = 253
Score = 35.6 bits (82), Expect = 0.010
Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 11/110 (10%)
Query: 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA------YTV 91
+ P+V V G +G GQ L + + + ++ RSA + +A T
Sbjct: 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLV---RSAQGKEKIGGEADVFIGDITD 59
Query: 92 EELTEDSFDGVD--IALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE 139
+ +F G+D + L SA + F P + + ++ V+
Sbjct: 60 ADSINPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVD 109
>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, plant protein; HET: NDP; 1.50A
{Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A*
3c3x_A* 2qw8_A*
Length = 318
Score = 34.9 bits (80), Expect = 0.022
Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 10/88 (11%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYR--------SIKMLASKRSAGKQLSF 84
M + + G TG +G + P +L +S G +
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVK 64
Query: 85 QDKAYTVEELTEDSFDGVDIALFSAGGS 112
+ E + VD+ + +
Sbjct: 65 GE--LDEHEKLVELMKKVDVVISALAFP 90
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics,
PSI-2, protein structure initiative; 1.40A {Lactococcus
lactis subsp}
Length = 219
Score = 34.2 bits (79), Expect = 0.025
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 13/77 (16%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQ-------DKAYTVEEL 94
+ +VG TG VG+ L LS D+ + R + + D +T EE+
Sbjct: 3 IFIVGSTGRVGKSLLKSLSTTDYQIYAG-----ARKVEQVPQYNNVKAVHFDVDWTPEEM 57
Query: 95 TEDSFDGVDIALFSAGG 111
G+D + +G
Sbjct: 58 -AKQLHGMDAIINVSGS 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.029
Identities = 7/25 (28%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 21 KPRTKPMFTRVRMSYQ-ESAPSVAV 44
K K + +++ Y +SAP++A+
Sbjct: 19 KQALKKLQASLKL-YADDSAPALAI 42
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics,
APC7755, NADP, P protein structure initiative; HET: MSE
NAP; 2.10A {Bacillus halodurans}
Length = 236
Score = 33.1 bits (76), Expect = 0.060
Identities = 21/102 (20%), Positives = 37/102 (36%), Gaps = 13/102 (12%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS--- 98
V VVG G V + LS L ++ + + G +L + + V E+
Sbjct: 24 VLVVGANGKVARYLLSELKNKGHEPVA---MVRNEEQGPELRERGASDIVVANLEEDFSH 80
Query: 99 -FDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE 139
F +D +F+AG G +D A + ++
Sbjct: 81 AFASIDAVVFAAG--SGPHTGADKTIL----IDLWGAIKTIQ 116
>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription;
HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB:
2fmu_A
Length = 242
Score = 31.3 bits (71), Expect = 0.24
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 9/100 (9%)
Query: 25 KPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSF 84
+++R ++ SV ++G +G G+ L + ++ + + L +R
Sbjct: 4 TEALSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGL-FSKVT-LIGRRKLTFDEEA 61
Query: 85 QDKAYTVE------ELTEDSFDGVDIALFSAGGSISKKFG 118
+ +F G D F G+ K G
Sbjct: 62 YKNVNQEVVDFEKLDDYASAFQGHD-VGFCCLGTTRGKAG 100
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 30.8 bits (69), Expect = 0.37
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
V ++G GA+G+ L F I + R + V + E
Sbjct: 3 VGLIG-YGAIGKFLAEWLERNGF---EIAAILDVRG--------EHEKMVRGIDEFLQRE 50
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNS 132
+D+A+ +A K + ++ G ++ S
Sbjct: 51 MDVAVEAASQQAVKDYAEKILKAGIDLIVLS 81
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent
aromatic alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP:
c.2.1.2
Length = 308
Score = 31.0 bits (70), Expect = 0.41
Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 19/94 (20%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSI-------------KMLASKRSAG 79
M S + ++G TG +G+ D P + ++L S +++G
Sbjct: 1 MG---SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASG 57
Query: 80 KQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSI 113
+ ++ VD + S GS+
Sbjct: 58 ANIVHGS--IDDHASLVEAVKNVD-VVISTVGSL 88
>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic
alcohol reductases, pcber, PLR, IFR, lignans,
isoflavonoids, plant protein; 2.50A {Thuja plicata}
SCOP: c.2.1.2
Length = 313
Score = 30.7 bits (69), Expect = 0.53
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 18/89 (20%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFP------------YRSIKMLASKRSAGK 80
M V +VG TG +G+ ++ P ++ML + G
Sbjct: 1 MD---KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGA 57
Query: 81 QLSFQDKAYTVEELTEDSFDGVDIALFSA 109
+L + D+ VD + SA
Sbjct: 58 KLIEAS--LDDHQRLVDALKQVD-VVISA 83
>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET:
NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A
2vrc_D
Length = 287
Score = 30.3 bits (69), Expect = 0.54
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-------EE 93
S+AV G TG +G + L + + I A R+ K + D+ V E
Sbjct: 2 SIAVTGATGQLGGLVIQHLLKKVPASQII---AIVRNVEKASTLADQGVEVRHGDYNQPE 58
Query: 94 LTEDSFDGVDIALF 107
+ +F GV LF
Sbjct: 59 SLQKAFAGVSKLLF 72
>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation,
flavin reductase, diaphorase, green HAEM binding
protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2
PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*
Length = 206
Score = 29.2 bits (66), Expect = 1.2
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 6/75 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKRSAGKQLSFQDKAYTVEELTED 97
+A+ G TG G L+ + R L S+ + D ++ +
Sbjct: 6 IAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGD-VLQAADV-DK 63
Query: 98 SFDGVDIALFSAGGS 112
+ G D + G
Sbjct: 64 TVAGQDAVIVLLGTR 78
>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold,
transcriptional regulation, short chain dehyd
reductase, NADP binding; 1.40A {Emericella nidulans}
SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A*
2vus_A 2vut_A* 2vuu_A*
Length = 352
Score = 29.4 bits (66), Expect = 1.2
Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 33 MSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYR 67
M+ Q+ ++AVVG TG G + V + R
Sbjct: 1 MAQQK--KTIAVVGATGRQGASLIRVAAAVGHHVR 33
>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase;
1.60A {Medicago sativa}
Length = 307
Score = 29.5 bits (66), Expect = 1.3
Identities = 15/89 (16%), Positives = 29/89 (32%), Gaps = 17/89 (19%)
Query: 38 SAPSVAVVGVTGAVGQEFLSVL--------------SDRDFPYRSIKMLASKRSAGKQLS 83
+ + ++G TGA+G+ + P +++ + +S G L
Sbjct: 1 TENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILL 60
Query: 84 FQDKAYTVEELTEDSFDGVDIALFSAGGS 112
D E + VD + A G
Sbjct: 61 EGD--INDHETLVKAIKQVD-IVICAAGR 86
>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura
genomics, PSI, protein structure initiative; 1.50A
{Pseudomonas aeruginosa} SCOP: c.2.1.2
Length = 215
Score = 28.8 bits (65), Expect = 1.5
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
V + G TG G+ L + + ++++ + + + EL
Sbjct: 8 VLLAGATGLTGEHLLDRILSEPT-LAKVIAP-ARKALAEHPRLDNPVGPLAELLPQLDGS 65
Query: 102 VDIALFSAGGSISKK 116
+D A G +I +
Sbjct: 66 IDTAFCCLGTTIKEA 80
>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm
2008} PDB: 3r14_A*
Length = 221
Score = 28.4 bits (63), Expect = 2.0
Identities = 11/121 (9%), Positives = 27/121 (22%), Gaps = 10/121 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDS-- 98
+ ++G G + Q + L D R + + +
Sbjct: 8 ITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXL 67
Query: 99 ---FDGVDIALFSAGGSISKKFGPI---AVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
+ +F I V S + P+ + + +
Sbjct: 68 EQAVTNAE-VVFVGAMESGSDMASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDN 126
Query: 153 M 153
+
Sbjct: 127 L 127
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 28.5 bits (64), Expect = 2.4
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 232 QYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSF 267
F AP L+ G +EEE+++ K K W +F
Sbjct: 454 FSVFG-----APFLKEGASEEEIRLSKMVMKFWANF 484
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 28.5 bits (64), Expect = 2.5
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 232 QYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSF 267
Y F S ++++ M +F
Sbjct: 454 TYVFRTNSMLGGHASFPPHDKDDHMKYWMTSFITNF 489
>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, unknown function;
HET: MNB; 2.30A {Shigella flexneri 2A}
Length = 236
Score = 27.8 bits (62), Expect = 3.0
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 20/107 (18%)
Query: 14 ISKLPANKPRTKPMFTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLA 73
+ R F + V ++G G + + ++ L+D+ +IK
Sbjct: 5 HHHHHHSSGRENLYFQGHMKN-------VLILGAGGQIARHVINQLADKQ----TIKQTL 53
Query: 74 SKRSAGKQLSFQDKAYTV--------EELTEDSFDGVDIALFSAGGS 112
R K + L + + G DI + G
Sbjct: 54 FARQPAKIHKPYPTNSQIIMGDVLNHAAL-KQAMQGQDIVYANLTGE 99
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 28.5 bits (64), Expect = 3.1
Identities = 6/36 (16%), Positives = 12/36 (33%)
Query: 232 QYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSF 267
F S ++ Y ++ T ++SF
Sbjct: 429 PAIFGAGSTGTLSSDSSYLTYNAAIIPVTMHYFISF 464
>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A
{Escherichia coli} PDB: 2zcv_A*
Length = 286
Score = 28.0 bits (63), Expect = 3.2
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 10/73 (13%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-------EEL 94
+A+ G TG +G + L + + A R+ K + + TV E
Sbjct: 2 IAITGATGQLGHYVIESLMKTVPASQIV---AIVRNPAKAQALAAQGITVRQADYGDEAA 58
Query: 95 TEDSFDGVDIALF 107
+ GV+ L
Sbjct: 59 LTSALQGVEKLLL 71
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short
chain dehydrogenase reductase, flavonoi oxidoreductase;
HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A*
3i6q_A*
Length = 346
Score = 28.1 bits (62), Expect = 3.4
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
V + G TG +GQ + D P + + + ++ +
Sbjct: 11 GRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAI 63
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
1.78A {Lactobacillus casei atcc 334}
Length = 224
Score = 27.7 bits (61), Expect = 4.0
Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFP----YRSIKMLASKRSAGKQLSFQDKAYTVEELTED 97
+AV+G TG G ++ R R K + + LTE
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRD----PQKAADRLGATVATLVKEPLVLTEA 58
Query: 98 SFDGVDIALFSAGGSISKKFGPIAVEKGSIVVD 130
D VD + + G + ++ + +V
Sbjct: 59 DLDSVDAVVDALSVPWGSGRGYLHLDFATHLVS 91
>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta
protein., structural genomics, PSI-2, protein STR
initiative; 1.60A {Staphylococcus aureus subsp}
Length = 289
Score = 27.6 bits (62), Expect = 4.7
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 11/74 (14%)
Query: 41 SVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTV-------EE 93
++ + G TG +G + + R+ K +V +E
Sbjct: 2 NIMLTGATGHLGTHITNQAIAN--HIDHFHIGV--RNVEKVPDDWRGKVSVRQLDYFNQE 57
Query: 94 LTEDSFDGVDIALF 107
++F G+D +F
Sbjct: 58 SMVEAFKGMDTVVF 71
>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain
dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A
{Clarkia breweri}
Length = 321
Score = 27.2 bits (60), Expect = 6.9
Identities = 12/85 (14%), Positives = 25/85 (29%), Gaps = 13/85 (15%)
Query: 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQL----SFQDKAYTV---- 91
+ + G TG +G+ + P + S + F+ T+
Sbjct: 5 EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64
Query: 92 ----EELTEDSFDGVDIALFSAGGS 112
E++ VDI + +
Sbjct: 65 MEEHEKMVS-VLKQVDIVISALPFP 88
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer,
structural genomics, unknown function; NMR
{Methanothermobacterthermautotrophicus str} SCOP:
a.39.4.1
Length = 84
Score = 25.7 bits (56), Expect = 7.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 54 EFLSVLSDRDFPYRSIKMLA 73
+ VL+ DFP++S + +A
Sbjct: 56 DAGQVLTADDFPFKSAEEVA 75
>1tu9_A Hypothetical protein PA3967; structural genomics, heme,
hemoglobin, pseudomonas aeruginos PSI, protein
structure initiative; HET: HEM; 1.20A {Pseudomonas
aeruginosa} SCOP: a.1.1.2
Length = 134
Score = 26.3 bits (58), Expect = 7.6
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 11 THFISKLPANKPRTKPMFTRVRMSYQESA 39
F A+ P+ + F M+ Q+
Sbjct: 24 DDFYRHFLASSPQIRAKFATTDMTAQKHL 52
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 26.9 bits (60), Expect = 7.9
Identities = 4/36 (11%), Positives = 13/36 (36%)
Query: 232 QYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSF 267
+ F + + +E ++ + W++F
Sbjct: 404 PFVFGNLDGLERMAKAEITDEVKQLSHTIQSAWITF 439
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 27.0 bits (60), Expect = 8.9
Identities = 3/37 (8%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 232 QYAFNL-FSHNAPVLENGYNEEEMKMVKETRKIWVSF 267
Y + + +++ ++ + W +F
Sbjct: 460 PYVLGIPMIGPTELFPCNFSKNDVMLSAVVMTYWTNF 496
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle
protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
3l43_A*
Length = 299
Score = 26.8 bits (59), Expect = 9.4
Identities = 12/41 (29%), Positives = 16/41 (39%)
Query: 28 FTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRS 68
F+ + + P +AVVG A L RDF R
Sbjct: 15 FSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRG 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.130 0.370
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,121,894
Number of extensions: 248542
Number of successful extensions: 618
Number of sequences better than 10.0: 1
Number of HSP's gapped: 569
Number of HSP's successfully gapped: 55
Length of query: 279
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 187
Effective length of database: 4,133,061
Effective search space: 772882407
Effective search space used: 772882407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)