RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 023678
(279 letters)
>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 154
Score = 121 bits (304), Expect = 6e-35
Identities = 72/157 (45%), Positives = 94/157 (59%), Gaps = 7/157 (4%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TGAVG + + +L + P I+ LAS RSAGK L F+D+ T+EE TE +F+G
Sbjct: 4 VAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEG 63
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
VDIALFSAG S S K+ P AV+ G +VVDN+S FR +VPLV+PEVN A+
Sbjct: 64 VDIALFSAGSSTSAKYAPYAVKAGVVVVDNTSYFRQNPDVPLVVPEVNAHAL------DA 117
Query: 162 KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198
+IA PN + +A LH R V ++
Sbjct: 118 HNGIIACPNAAWNSVQIAE-TLHERGLVRPTAELKFE 153
>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 147
Score = 120 bits (301), Expect = 1e-34
Identities = 32/147 (21%), Positives = 58/147 (39%), Gaps = 12/147 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSD-RDFPYRSIKMLASKRSAGKQLSFQDKAYTVEE-LTEDSF 99
V +VG G VG + + + RDF ++ + +F A + + +S
Sbjct: 3 VGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESL 62
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAMSGIK 157
+D + GGS ++K P + G +D +S RM + + + VN + I
Sbjct: 63 KQLDAVITCQGGSYTEKVYPALRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQ---IL 119
Query: 158 VGMGKG-----ALIANPNCSTIICLMA 179
G+ G A P T+ ++A
Sbjct: 120 HGIHHGTKTFVGGAAEPLRRTLRIILA 146
>d1mb4a2 d.81.1.1 (A:133-354) Aspartate beta-semialdehyde
dehydrogenase {Vibrio cholerae [TaxId: 666]}
Length = 222
Score = 116 bits (292), Expect = 2e-32
Identities = 36/135 (26%), Positives = 45/135 (33%), Gaps = 28/135 (20%)
Query: 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTR------------- 216
NC+ + LMA L+ R V M TYQAASGAGA M EL Q
Sbjct: 1 NCTVSLMLMALGGLYERGLVEWMSAMTYQAASGAGAQNMRELISQMGVINDAVSSELANP 60
Query: 217 ------------EVLEGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
E + F A +L +NG ++EE K E KI
Sbjct: 61 ASSILDIDKKVAETMRSGSFPTDNFGVPLAGSLIPWIDVKRDNGQSKEEWKAGVEANKIL 120
Query: 265 VSFKMNFFVSPCSCN 279
+ P
Sbjct: 121 ---GLQDSPVPIDGT 132
>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 144
Score = 111 bits (279), Expect = 2e-31
Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTEDSFDG 101
VAVVG TG+VG+ + +L +RDFP + +LAS SAG+++ F + + V ++ F
Sbjct: 5 VAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSS 64
Query: 102 VDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSGIKVGMG 161
V +A F+A +S+ A G V+D S A P V+ VN E ++
Sbjct: 65 VGLAFFAAAAEVSRAHAERARAAGCSVIDLSGALEP-SVAPPVMVSVNAERLASQA---- 119
Query: 162 KGALIANPNCSTIICLMAATPLH 184
L+++P + L H
Sbjct: 120 APFLLSSPAALNAVLLGELLIKH 142
>d1t4ba2 d.81.1.1 (A:134-354) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 221
Score = 112 bits (281), Expect = 8e-31
Identities = 33/124 (26%), Positives = 43/124 (34%), Gaps = 25/124 (20%)
Query: 170 NCSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVL---------- 219
NC+ + LM+ L V + V+TYQAASG GA M EL Q +
Sbjct: 1 NCTVSLMLMSLGGLFANDLVDWVSVATYQAASGGGARHMRELLTQMGHLYGHVADELATP 60
Query: 220 ---------------EGKPPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIW 264
F A +L L+NG + EE K ET KI
Sbjct: 61 SSAILDIERKVTTLTRSGELPVDNFGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKIL 120
Query: 265 VSFK 268
+
Sbjct: 121 NTSS 124
>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde
dehydrogenase {Escherichia coli [TaxId: 562]}
Length = 146
Score = 106 bits (266), Expect = 2e-29
Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 12/142 (8%)
Query: 42 VAVVGVTGAVGQEFLS-VLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE-DSF 99
V +G G VG + ++ +RDF ++ + SF T+++ + ++
Sbjct: 4 VGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEAL 63
Query: 100 DGVDIALFSAGGSISKKFGPIAVEKG--SIVVDNSSAFRMVENVPLVIPEVNPEAM---- 153
+DI + GG + + P E G +D +S+ RM ++ +++ VN + +
Sbjct: 64 KALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGL 123
Query: 154 -SGIKVGMGKGALIANPNCSTI 174
+GI+ +G A P +
Sbjct: 124 NNGIRTFVGG---AAEPLRRML 142
>d2gz1a2 d.81.1.1 (A:128-329) Aspartate beta-semialdehyde
dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}
Length = 202
Score = 98.7 bits (245), Expect = 1e-25
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGK-------- 222
CSTI ++A P+ ++ + R++VSTYQA SGAG A+ E + + REVL
Sbjct: 1 CSTIQMMVALEPVRQKWGLDRIIVSTYQAVSGAGMGAILETQRELREVLNDGVKPCDLHA 60
Query: 223 ---PPTCKIFSQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNF 271
P AFN +N Y EEMKM KET+KI +
Sbjct: 61 EILPSGGDKKHYPIAFNALPQIDVFTDNDYTYEEMKMTKETKKIMEDDSIAV 112
>d2hjsa2 d.81.1.1 (A:130-319) Usg-1 protein homolog PA3116
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 190
Score = 94.0 bits (233), Expect = 4e-24
Identities = 24/107 (22%), Positives = 45/107 (42%), Gaps = 1/107 (0%)
Query: 171 CSTIICL-MAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIF 229
C+ L PL ++ ++ + S G ++EL QT E+L +P ++F
Sbjct: 1 CAVAAELCEVLAPLLATLDCRQLNLTACLSVSSLGREGVKELARQTAELLNARPLEPRLF 60
Query: 230 SQQYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSFKMNFFVSPC 276
+Q AFNL + V G++ E ++ E + + V+
Sbjct: 61 DRQIAFNLLAQVGAVDAEGHSAIERRIFAEVQALLGERIGPLNVTCI 107
>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde
dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}
Length = 183
Score = 79.6 bits (195), Expect = 1e-18
Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 19/175 (10%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELT------ 95
+AV+G +G G E + +L++ P IK++ + R AG+Q ++L
Sbjct: 8 IAVLGASGYTGAEIVRLLANH--PQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVK 65
Query: 96 EDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEAMSG 155
+ F VD +++ ++ IV ++ N + A
Sbjct: 66 DADFSNVDAVFCCLPHGTTQEIIKGLPQELKIVDLSADFRLRDINEYAEWYGHSHRAPEL 125
Query: 156 IKVGMG-----------KGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQA 199
+ + L+ANP A L+ + YQ
Sbjct: 126 QQEAVYGLTEVLRNEIRNARLVANPGLVKGASGQAVQNLNLMMGLPENTGLQYQP 180
>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase
(acylating) {Pseudomonas sp. [TaxId: 306]}
Length = 157
Score = 77.0 bits (189), Expect = 4e-18
Identities = 28/157 (17%), Positives = 53/157 (33%), Gaps = 21/157 (13%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKA-------YTVEEL 94
VA++G +G +G + + + R+ Y + + +A L+ + +
Sbjct: 7 VAIIG-SGNIGTDLMIKV-LRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLI 64
Query: 95 TEDSFDGVDIALF--SAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
F +D SA + + + G ++D + A P +P VN E
Sbjct: 65 KLPEFADIDFVFDATSASAHVQNEALLRQAKPGIRLIDLTPA----AIGPYCVPVVNLEE 120
Query: 153 MSGIK-VGMGKGALIANPNCSTIICLMAATPLHRRAK 188
G V M + I+ A R A+
Sbjct: 121 HLGKLNVNM-----VTYAGNLDIMTSAALATAERMAQ 152
>d1vkna1 c.2.1.3 (A:1-144,A:308-339)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Thermotoga maritima [TaxId: 2336]}
Length = 176
Score = 74.9 bits (183), Expect = 4e-17
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 42/190 (22%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK-----AYTVEELTE 96
++G TG G E + +L + P I L+S+ AGK+L + E E
Sbjct: 4 AGIIGATGYTGLELVRLLKN--HPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE 61
Query: 97 DSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVE----------------- 139
D+ + S + KG ++D + FR +
Sbjct: 62 KVSKNCDVLFTALPAGASYDL--VRELKGVKIIDLGADFRFDDPGVYREWYGKELSGYEN 119
Query: 140 -NVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMVVSTYQ 198
+PE++ E + + ++ NP A ++ +
Sbjct: 120 IKRVYGLPELHREEIKNAQ-------VVGNPGLVKGASGQAVQNMNIMFGL--------D 164
Query: 199 AASGAGAAAM 208
G +
Sbjct: 165 ETKGLEFTPI 174
>d2g17a1 c.2.1.3 (A:1-153,A:309-334)
N-acetyl-gamma-glutamyl-phosphate reductase ArgC
{Salmonella typhimurium [TaxId: 90371]}
Length = 179
Score = 64.7 bits (156), Expect = 3e-13
Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 21/169 (12%)
Query: 42 VAVVGVTGAVGQEFLSVLSDR-DFPYRSIKMLASKRSAGK--------QLSFQDKAYTVE 92
+VG +G G E +S ++ ++ + A AGK D
Sbjct: 4 TLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPM 63
Query: 93 ELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRMVENVPLVIPEVNPEA 152
D VD+ + +S P ++ G +V D S AFR+ +
Sbjct: 64 SDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDLSGAFRVNDRAFYEKYYGFTHQ 123
Query: 153 MSGIKVGMGKGA------------LIANPNCSTIICLMAATPLHRRAKV 189
+ G LIA P A + R
Sbjct: 124 YPELLEQAVYGLAEWNVDKLNTANLIAVPGLLKGAAAQAVQCANIRFGF 172
>d1b7go2 d.81.1.1 (O:139-300) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 162
Score = 51.0 bits (122), Expect = 1e-08
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEEL 211
C+T L +++ +KV ++ + + A+ +
Sbjct: 1 CNTTALLRTICTVNKVSKVEKVRATIVRRAADQKEVKKGPI 41
>d1cf2o2 d.81.1.1 (O:139-303) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus
[TaxId: 2180]}
Length = 165
Score = 46.4 bits (110), Expect = 5e-07
Identities = 5/93 (5%), Positives = 18/93 (19%), Gaps = 31/93 (33%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T PLH + ++ + + +
Sbjct: 2 CNTTGLCRTLKPLHDSFGIKKVRAVIVRRGADPAQVSK---------------------- 39
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKETRKI 263
+ + + + + +
Sbjct: 40 -GPINAIIPN--------PPKLPSHHGPDVKTV 63
>d2czca1 d.81.1.1 (A:140-301) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 162
Score = 35.6 bits (82), Expect = 0.003
Identities = 6/89 (6%), Positives = 18/89 (20%), Gaps = 28/89 (31%)
Query: 171 CSTIICLMAATPLHRRAKVTRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCKIFS 230
C+T + + + A V+ A
Sbjct: 2 CNTTGLVRTLSAIREYADYVYAVMIRRAADPN-------------------------DTK 36
Query: 231 QQYAFNLFSHNAPVLENGYNEEEMKMVKE 259
+ + ++ +++ V
Sbjct: 37 RGPINAIKPTVE---VPSHHGPDVQTVIP 62
>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 144
Score = 31.1 bits (70), Expect = 0.062
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 10/118 (8%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQD-------KAYTVEEL 94
VAV+G +G +GQ +L + + + + G K Y E
Sbjct: 3 VAVLGASGGIGQPLSLLLKNSPL-VSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQ 61
Query: 95 TEDSFDGVDIALFSAGGSISKKFGPIAVEK--GSIVVDNSSAFRMVENVPLVIPEVNP 150
D G D+ + AG + +IV ++A ++ NP
Sbjct: 62 LPDCLKGCDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP 119
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 30.2 bits (67), Expect = 0.24
Identities = 29/176 (16%), Positives = 55/176 (31%), Gaps = 15/176 (8%)
Query: 28 FTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRS----------IKMLASKRS 77
F+ + + P +AVVG A L RDF R ++++ S
Sbjct: 15 FSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTE 74
Query: 78 AGKQLSFQDKAYTVEELTEDSFDGVDIALFSAGGSISKKFGPIAVEKGSIVVDNSSAFRM 137
+ L + K +T E + + IS PI + S V N + +
Sbjct: 75 YAEFLHCKGKKFTDFEEVRLEIEAETDRVTGTNKGISPV--PINLRVYSPHVLNLTLVDL 132
Query: 138 VENVPLVIPEVNPEAMSGIKVGMGKGALIANPNCSTIICLMAATPLHRRAKVTRMV 193
+P + ++ + NC I+ + A + ++
Sbjct: 133 --PGMTKVPVGDQPPDIEFQIRDMLMQFVTKENC-LILAVSPANSDLANSDALKIA 185
>d1ukca_ c.69.1.17 (A:) Esterase EstA {Aspergillus niger [TaxId:
5061]}
Length = 517
Score = 29.8 bits (65), Expect = 0.39
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 233 YAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSF 267
F S ++ Y ++ T ++SF
Sbjct: 425 AIFGAGSTGTLSSDSSYLTYNAAIIPVTMHYFISF 459
>d2h7ca1 c.69.1.1 (A:1021-1553) Mammalian carboxylesterase (liver
carboxylesterase I) {Human (Homo sapiens) [TaxId: 9606]}
Length = 532
Score = 29.3 bits (64), Expect = 0.52
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 241 NAPVLENGYNEEEMKMVKETRKIWVSF 267
AP L+ G +EEE+++ K K W +F
Sbjct: 456 GAPFLKEGASEEEIRLSKMVMKFWANF 482
>d1qe3a_ c.69.1.1 (A:) Thermophilic para-nitrobenzyl esterase (PNB
esterase) {Bacillus subtilis [TaxId: 1423]}
Length = 483
Score = 29.3 bits (64), Expect = 0.63
Identities = 4/36 (11%), Positives = 13/36 (36%)
Query: 232 QYAFNLFSHNAPVLENGYNEEEMKMVKETRKIWVSF 267
+ F + + +E ++ + W++F
Sbjct: 403 PFVFGNLDGLERMAKAEITDEVKQLSHTIQSAWITF 438
>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli
[TaxId: 562]}
Length = 145
Score = 27.7 bits (61), Expect = 0.98
Identities = 22/119 (18%), Positives = 37/119 (31%), Gaps = 11/119 (9%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSA-GKQLSFQD-------KAYTVEE 93
VAV+G G +GQ +L + + + G + K ++ E+
Sbjct: 3 VAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGED 62
Query: 94 LTEDSFDGVDIALFSAGGSISKKFGPIAV--EKGSIVVDNSSAFRMVENVPLVIPEVNP 150
T +G D+ L SAG + IV + + NP
Sbjct: 63 ATPA-LEGADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP 120
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 141
Score = 26.6 bits (59), Expect = 2.4
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 18/72 (25%)
Query: 70 KMLASKRSAGKQLSFQDKAYTVEELTEDSF---DGVDIALFSAGGSISKKFG-PIAVEKG 125
++ + GKQ S DK YTVE+ D+F D VD GS+SK G + G
Sbjct: 26 ALMFDRSFVGKQFSANDKVYTVEKA--DNFEYHDPVD-------GSVSKNQGLRLIFADG 76
Query: 126 SIVVDNSSAFRM 137
S ++ FR+
Sbjct: 77 SRII-----FRL 83
>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240
(T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 252
Score = 27.1 bits (58), Expect = 2.5
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 40 PSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVE 92
P+V V G +G GQ L + + + RSA + +A
Sbjct: 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAK---GLVRSAQGKEKIGGEADVFI 53
>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 232
Score = 27.0 bits (58), Expect = 2.6
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 28 FTRVRMSYQESAPSVAVVGVTGAVGQEFLSVLSDRDFPYR 67
+++R ++ SV ++G +G G+ L + ++ +
Sbjct: 3 LSKLREDFRMQNKSVFILGASGETGRVLLKEILEQGLFSK 42
>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase
{Thermotoga maritima [TaxId: 2336]}
Length = 128
Score = 26.1 bits (57), Expect = 3.1
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 42 VAVVGVTGAVGQEFLSVLSDRDF 64
+VG +G +GQE V S++
Sbjct: 3 YGIVGYSGRMGQEIQKVFSEKGH 25
>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA
{Aspergillus nidulans [TaxId: 162425]}
Length = 350
Score = 26.9 bits (58), Expect = 3.2
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 37 ESAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDKAYTVEELTE 96
+ ++AVVG TG G + V + R+ A ++L +
Sbjct: 1 QQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA-EELQAIPNVTLFQGPLL 59
Query: 97 DSFDGVDIALFSA 109
++ +D A
Sbjct: 60 NNVPLMDTLFEGA 72
>d1e3ha5 d.101.1.1 (A:152-262) Polynucleotide
phosphorylase/guanosine pentaphosphate synthase
(PNPase/GPSI), domains 2 and 5 {Streptomyces
antibioticus [TaxId: 1890]}
Length = 111
Score = 25.3 bits (55), Expect = 5.2
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 7/76 (9%)
Query: 153 MSGIKVGMGKGALIANPN-----CSTIICLMAATPLHRRAKVTRMVVST--YQAASGAGA 205
+ G++V + +G +A P + ++A L MV + +
Sbjct: 5 IGGVRVALIRGQWVAFPTHTELEDAVFDMVVAGRVLEDGDVAIMMVEAEATEKTIQLVKD 64
Query: 206 AAMEELELQTREVLEG 221
A E L+
Sbjct: 65 GAEAPTEEVVAAGLDA 80
>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase
{Loblolly pine (Pinus taeda) [TaxId: 3352]}
Length = 307
Score = 25.9 bits (55), Expect = 5.6
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 38 SAPSVAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLSFQDK 87
S + ++G TG +G+ D P + ++ S ++ +
Sbjct: 2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLES 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.130 0.370
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 968,774
Number of extensions: 42324
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 33
Length of query: 279
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 195
Effective length of database: 1,254,276
Effective search space: 244583820
Effective search space used: 244583820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (23.9 bits)