BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023680
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FS2|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
Length = 272
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 21/209 (10%)
Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAP 102
W +P ELLL I S + P ++ SGVC W SL
Sbjct: 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE------------------SLWQ 50
Query: 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR 162
L + + + +E + + I + C LQ+L L + +LSD + LA NL R
Sbjct: 51 TLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTLAKNS-NLVR 108
Query: 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNL-GWC 221
LN+SGC+ FS+ AL L C +L LNL C + A+ + LNL G+
Sbjct: 109 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 168
Query: 222 EDVGDVGVMNLAYGCPDLRSLDLCGCVCI 250
+++ + L CP+L LDL V +
Sbjct: 169 KNLQKSDLSTLVRRCPNLVHLDLSDSVML 197
>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|E Chain E, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|G Chain G, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|I Chain I, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|K Chain K, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|M Chain M, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|1FQV|O Chain O, Insights Into Scf Ubiquitin Ligases From The Structure Of
The Skp1-Skp2 Complex
pdb|2ASS|B Chain B, Crystal Structure Of The Skp1-Skp2-Cks1 Complex
pdb|2AST|B Chain B, Crystal Structure Of Skp1-Skp2-Cks1 In Complex With A P27
Peptide
Length = 336
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 95/229 (41%), Gaps = 23/229 (10%)
Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVL---- 98
W +P ELLL I S + P ++ SGVC W +L N++ V
Sbjct: 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 68
Query: 99 ----------------SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS 142
LA + + + +E + + I + C LQ+L L +
Sbjct: 69 SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EG 127
Query: 143 FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA 202
+LSD + LA NL RLN+SGC+ FS+ AL L C +L LNL C +
Sbjct: 128 LRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186
Query: 203 LQAIGRNCNQLQSLNL-GWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCI 250
A+ + LNL G+ +++ + L CP+L LDL V +
Sbjct: 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 235
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And The
Jaz1 Degron
Length = 592
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 94/244 (38%), Gaps = 62/244 (25%)
Query: 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTL----------VLRQDKPQLE---------D 121
L L LS+ N ++ A ++ KL L L Q P LE D
Sbjct: 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331
Query: 122 NAVEAIANSCHDLQDLDLSKSFK----------LSDRSLYALAHGCPNLTRL--NISGCT 169
+E +A C L+ L + + +S R L ALA GC L + +S T
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391
Query: 170 SFSDHALA-YLCGFC--------RKLKILNL----------CGCVK-----------AAT 199
+ S ++ YL C R+ +I +L GC K T
Sbjct: 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451
Query: 200 DYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVI 259
D L IG+ ++ + LG+ + D G+M + GCP+L+ L++ GC +A V
Sbjct: 452 DLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT 510
Query: 260 IRPS 263
PS
Sbjct: 511 KLPS 514
Score = 35.0 bits (79), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 146 SDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQA 205
SD L + GCPNL +L + GC FS+ A+A L+ L + G + T L
Sbjct: 476 SDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQ 534
Query: 206 IGR 208
+ R
Sbjct: 535 MAR 537
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 20/172 (11%)
Query: 66 ASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQ------L 119
AS VC W H++++ C + L+ + L++L L+ KP+ +
Sbjct: 37 ASLVCRRWFKIDSETREHVTMALCYTATPD---RLSRRFPNLRSLKLK-GKPRAAMFNLI 92
Query: 120 EDNA-------VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHG-CPNLTRLNISGCTSF 171
+N V I+N+ L+ + + +SD L LA +L L + C+ F
Sbjct: 93 PENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGF 151
Query: 172 SDHALAYLCGFCRKLKILNLCGCVKAATDYA-LQAIGRNCNQLQSLNLGWCE 222
+ L + CRK+K L + + D L + ++ L+ LN E
Sbjct: 152 TTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE 203
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 76 AICLGLTHLSLSWCKNNMNNLV--LSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHD 133
++C LT L+LS+ +LV L PKL +L L +ED +E +A++C D
Sbjct: 286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL------DYIEDAGLEVLASTCKD 339
Query: 134 LQDLDL--SKSF------KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 185
L++L + S+ F L+++ L +++ GCP L + + C ++ AL +
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPN 398
Query: 186 LKILNLCGCVKAATDY--------------------------------ALQAIGRNCNQL 213
+ LC A DY + IG ++
Sbjct: 399 MTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKM 458
Query: 214 QSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC 247
+ L++ + D D+G+ ++ GC LR L++ C
Sbjct: 459 EMLSVAFAGD-SDLGMHHVLSGCDSLRKLEIRDC 491
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Query: 124 VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183
+EA+++S L+++ L K ++D L +A N L +S C FS LA + C
Sbjct: 97 IEAMSSSYTWLEEIRL-KRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATC 155
Query: 184 RKLKILNLCGC-VKAATDYALQAIGRNCNQLQSLNLG-WCEDVGDVGVMNLAYGCPDLRS 241
R LK L+L V + + L L SLN+ +V + L CP+L+S
Sbjct: 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKS 215
Query: 242 LDLCGCVCITGISS 255
L L V + +++
Sbjct: 216 LKLNRAVPLEKLAT 229
Score = 30.8 bits (68), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 60/129 (46%), Gaps = 12/129 (9%)
Query: 122 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISGCTS-FSDHALA 177
+ + AIA +C +L++LDL +S + D S + L+H +L LNIS S S AL
Sbjct: 146 DGLAAIAATCRNLKELDLRES-DVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALE 204
Query: 178 YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLG--WCEDVGDV--GVMNLA 233
L C LK L L +A L + + QL+ L G E DV G+
Sbjct: 205 RLVTRCPNLKSLKLN---RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVAL 261
Query: 234 YGCPDLRSL 242
GC +LR L
Sbjct: 262 SGCKELRCL 270
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 118 QLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALA---HGCPNLTRLNISGCTSFSDH 174
+LE + ++ S +LQ+L KS K+ + L AL H P L L++ GCT+ ++
Sbjct: 189 RLEWTGIRSLPASIANLQNL---KSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY 245
Query: 175 ALAYLCGFCRKLKILNLCGC 194
+ G LK L L C
Sbjct: 246 PPIF--GGRAPLKRLILKDC 263
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 150 LYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC-VKAATDY 201
L LA CPNLT LN+SG D + LK L+L C V DY
Sbjct: 80 LEVLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131
>pdb|1FS1|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
pdb|1FS1|C Chain C, Insights Into Scf Ubiquitin Ligases From The Structure
Of The Skp1-Skp2 Complex
Length = 53
Score = 28.1 bits (61), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGW 73
W +P ELLL I S + P ++ SGVC W
Sbjct: 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRW 39
>pdb|1LDK|E Chain E, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin
Ligase Complex
Length = 41
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGW 73
W +P ELLL I S + P ++ SGVC W
Sbjct: 1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRW 31
>pdb|2HJR|A Chain A, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|B Chain B, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|C Chain C, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|D Chain D, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|E Chain E, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|F Chain F, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|G Chain G, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|H Chain H, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|I Chain I, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|J Chain J, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|K Chain K, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
pdb|2HJR|L Chain L, Crystal Structure Of Cryptosporidium Parvum Malate
Dehydrogenase
Length = 328
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 222 EDVGDVGVMNLAYGCPDLRSLDLCGCVCITG 252
+D+GDV + ++ G P ++LDL C+ + G
Sbjct: 36 KDLGDVYMFDIIEGVPQGKALDLNHCMALIG 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,231,825
Number of Sequences: 62578
Number of extensions: 259293
Number of successful extensions: 830
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 20
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (24.3 bits)