Query 023680
Match_columns 279
No_of_seqs 170 out of 2119
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 05:51:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023680.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023680hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2120 SCF ubiquitin ligase, 99.9 3.4E-28 7.3E-33 191.1 7.7 226 41-277 96-373 (419)
2 KOG4341 F-box protein containi 99.9 5.2E-28 1.1E-32 197.7 6.8 232 42-278 71-357 (483)
3 KOG4341 F-box protein containi 99.9 3.2E-26 6.9E-31 187.3 5.2 262 3-278 70-383 (483)
4 KOG2120 SCF ubiquitin ligase, 99.8 1.3E-19 2.9E-24 143.0 7.7 256 5-272 98-392 (419)
5 KOG1947 Leucine rich repeat pr 99.6 1.5E-14 3.2E-19 128.5 10.1 181 96-278 179-373 (482)
6 cd00116 LRR_RI Leucine-rich re 99.5 2.4E-12 5.1E-17 108.3 18.9 191 78-278 80-289 (319)
7 KOG1947 Leucine rich repeat pr 99.5 9.8E-14 2.1E-18 123.2 10.6 170 103-277 159-331 (482)
8 cd00116 LRR_RI Leucine-rich re 99.5 3E-12 6.5E-17 107.7 17.5 193 79-279 51-262 (319)
9 KOG1909 Ran GTPase-activating 99.0 6.9E-09 1.5E-13 84.5 12.1 33 81-113 94-128 (382)
10 KOG3207 Beta-tubulin folding c 98.9 1.7E-10 3.8E-15 96.2 0.6 171 81-258 123-322 (505)
11 KOG1909 Ran GTPase-activating 98.9 6.4E-09 1.4E-13 84.7 8.9 49 101-152 88-139 (382)
12 KOG3665 ZYG-1-like serine/thre 98.9 5E-09 1.1E-13 95.7 9.2 150 104-262 121-274 (699)
13 KOG3665 ZYG-1-like serine/thre 98.9 6.8E-09 1.5E-13 94.8 8.3 138 131-276 121-259 (699)
14 PF12937 F-box-like: F-box-lik 98.8 4.5E-09 9.7E-14 61.7 4.2 37 43-79 1-37 (47)
15 KOG3207 Beta-tubulin folding c 98.8 1.2E-09 2.5E-14 91.4 2.1 146 102-255 118-264 (505)
16 PLN00113 leucine-rich repeat r 98.7 3.7E-08 8.1E-13 95.0 7.2 133 131-278 139-271 (968)
17 PLN00113 leucine-rich repeat r 98.6 6.6E-08 1.4E-12 93.4 6.9 38 235-278 282-319 (968)
18 PF14580 LRR_9: Leucine-rich r 98.4 1.8E-08 3.8E-13 76.4 -2.0 128 105-247 19-150 (175)
19 KOG3864 Uncharacterized conser 98.4 3.8E-07 8.2E-12 69.1 3.7 83 135-221 104-186 (221)
20 PF00646 F-box: F-box domain; 98.3 2.7E-07 5.9E-12 54.3 1.1 37 42-78 2-38 (48)
21 PF14580 LRR_9: Leucine-rich r 98.2 3.8E-07 8.3E-12 69.1 0.7 14 235-248 111-124 (175)
22 PLN03210 Resistant to P. syrin 98.1 1.4E-05 3E-10 78.5 8.9 40 210-251 777-816 (1153)
23 smart00256 FBOX A Receptor for 98.1 3.7E-06 8.1E-11 47.5 3.1 34 46-79 1-34 (41)
24 PLN03210 Resistant to P. syrin 98.1 1E-05 2.2E-10 79.3 7.7 18 234-251 866-883 (1153)
25 KOG3864 Uncharacterized conser 98.0 7.6E-06 1.6E-10 62.2 4.8 106 107-216 103-209 (221)
26 smart00367 LRR_CC Leucine-rich 97.9 1.7E-05 3.7E-10 39.9 3.1 24 236-259 1-24 (26)
27 KOG2982 Uncharacterized conser 97.9 1.3E-05 2.8E-10 64.7 3.6 162 81-250 73-262 (418)
28 KOG4194 Membrane glycoprotein 97.9 4.7E-06 1E-10 72.9 1.1 110 131-248 316-427 (873)
29 COG5238 RNA1 Ran GTPase-activa 97.8 0.00042 9.1E-09 55.5 11.1 152 102-260 89-264 (388)
30 KOG2982 Uncharacterized conser 97.8 1.1E-05 2.3E-10 65.1 1.6 182 83-271 49-233 (418)
31 KOG4194 Membrane glycoprotein 97.6 2.2E-05 4.7E-10 68.9 1.0 153 81-248 80-232 (873)
32 smart00367 LRR_CC Leucine-rich 97.5 0.00018 4E-09 36.0 3.1 24 210-233 1-24 (26)
33 COG5238 RNA1 Ran GTPase-activa 97.4 0.0019 4.2E-08 51.8 10.0 164 79-248 92-283 (388)
34 KOG0618 Serine/threonine phosp 97.3 5.1E-05 1.1E-09 69.9 -0.3 37 210-248 451-487 (1081)
35 KOG1259 Nischarin, modulator o 97.1 0.00032 6.9E-09 57.0 2.5 80 131-221 283-362 (490)
36 PF13855 LRR_8: Leucine rich r 97.1 2.3E-05 5E-10 48.6 -3.6 60 184-248 1-60 (61)
37 PF12799 LRR_4: Leucine Rich r 97.0 0.00058 1.3E-08 39.0 2.5 37 211-251 1-37 (44)
38 KOG0444 Cytoskeletal regulator 96.8 4E-05 8.6E-10 68.0 -5.3 84 103-193 171-254 (1255)
39 KOG1259 Nischarin, modulator o 96.7 0.00097 2.1E-08 54.2 2.2 125 106-248 285-410 (490)
40 KOG0618 Serine/threonine phosp 96.6 0.00031 6.7E-09 64.9 -1.6 125 134-276 361-485 (1081)
41 KOG4308 LRR-containing protein 96.6 0.00092 2E-08 59.1 1.3 135 131-271 171-323 (478)
42 PF13855 LRR_8: Leucine rich r 96.5 0.00011 2.4E-09 45.5 -3.4 61 211-279 1-61 (61)
43 KOG0444 Cytoskeletal regulator 96.5 0.00016 3.4E-09 64.4 -3.9 57 103-168 220-278 (1255)
44 KOG2739 Leucine-rich acidic nu 96.5 0.00042 9.2E-09 55.0 -1.3 87 157-247 64-153 (260)
45 PF13516 LRR_6: Leucine Rich r 96.4 0.0025 5.4E-08 31.1 1.7 22 236-258 1-22 (24)
46 PLN03150 hypothetical protein; 96.3 0.0071 1.5E-07 55.8 5.6 62 182-248 440-501 (623)
47 KOG2123 Uncharacterized conser 96.2 0.0031 6.7E-08 50.8 2.2 118 131-261 18-138 (388)
48 KOG2739 Leucine-rich acidic nu 96.1 0.0028 6.1E-08 50.4 1.7 86 131-219 64-151 (260)
49 KOG1859 Leucine-rich repeat pr 96.0 0.0015 3.3E-08 59.3 -0.4 81 156-248 185-265 (1096)
50 PLN03215 ascorbic acid mannose 96.0 0.0062 1.4E-07 51.7 3.3 38 41-78 2-40 (373)
51 KOG1859 Leucine-rich repeat pr 96.0 0.0011 2.5E-08 60.0 -1.4 107 129-249 184-291 (1096)
52 KOG4308 LRR-containing protein 95.9 0.006 1.3E-07 54.1 2.7 185 81-274 89-297 (478)
53 KOG2123 Uncharacterized conser 95.6 0.0025 5.4E-08 51.4 -0.6 105 158-273 19-123 (388)
54 PF12799 LRR_4: Leucine Rich r 95.6 0.014 3E-07 33.3 2.6 34 184-221 1-34 (44)
55 PRK15387 E3 ubiquitin-protein 95.6 0.013 2.7E-07 55.0 3.7 16 9-24 64-79 (788)
56 PLN03150 hypothetical protein; 95.5 0.027 5.9E-07 52.0 5.8 110 134-251 420-529 (623)
57 KOG4658 Apoptotic ATPase [Sign 95.2 0.03 6.6E-07 53.5 5.1 15 235-249 715-729 (889)
58 PF13516 LRR_6: Leucine Rich r 95.1 0.024 5.1E-07 27.5 2.2 18 212-230 3-20 (24)
59 PF12937 F-box-like: F-box-lik 94.6 0.0077 1.7E-07 34.9 -0.4 30 6-35 2-31 (47)
60 KOG2997 F-box protein FBX9 [Ge 94.4 0.028 6.1E-07 46.0 2.2 38 40-77 104-146 (366)
61 KOG4658 Apoptotic ATPase [Sign 94.2 0.054 1.2E-06 51.8 4.1 134 103-247 543-678 (889)
62 PRK15387 E3 ubiquitin-protein 94.1 0.06 1.3E-06 50.6 4.0 91 106-222 223-313 (788)
63 smart00368 LRR_RI Leucine rich 93.9 0.097 2.1E-06 26.5 3.0 22 237-259 2-23 (28)
64 PRK15386 type III secretion pr 93.6 0.051 1.1E-06 46.9 2.5 135 80-247 53-187 (426)
65 KOG0281 Beta-TrCP (transducin 93.3 0.046 9.9E-07 45.3 1.6 40 40-79 72-115 (499)
66 KOG0472 Leucine-rich repeat pr 93.0 0.13 2.8E-06 44.0 3.8 112 126-249 429-540 (565)
67 KOG1644 U2-associated snRNP A' 92.9 0.056 1.2E-06 41.7 1.5 12 182-193 111-122 (233)
68 KOG0617 Ras suppressor protein 92.8 0.001 2.3E-08 49.7 -7.7 36 210-248 149-184 (264)
69 PRK15386 type III secretion pr 92.6 0.24 5.3E-06 42.9 5.1 146 79-258 72-221 (426)
70 smart00368 LRR_RI Leucine rich 91.8 0.31 6.7E-06 24.6 3.0 22 211-233 2-23 (28)
71 KOG3763 mRNA export factor TAP 91.0 0.45 9.7E-06 42.3 5.0 91 125-217 211-307 (585)
72 KOG3763 mRNA export factor TAP 90.5 0.61 1.3E-05 41.5 5.4 92 150-243 210-307 (585)
73 KOG4579 Leucine-rich repeat (L 90.3 0.13 2.9E-06 37.3 1.0 13 210-222 99-111 (177)
74 PRK15370 E3 ubiquitin-protein 89.6 0.79 1.7E-05 43.4 5.8 88 158-258 346-435 (754)
75 KOG4579 Leucine-rich repeat (L 89.6 0.17 3.7E-06 36.7 1.1 87 159-251 28-114 (177)
76 KOG1644 U2-associated snRNP A' 89.2 0.3 6.6E-06 37.8 2.3 108 131-248 41-151 (233)
77 KOG0531 Protein phosphatase 1, 88.2 0.19 4E-06 44.1 0.7 12 130-141 116-127 (414)
78 KOG4237 Extracellular matrix p 88.0 0.29 6.2E-06 41.8 1.6 43 207-251 318-360 (498)
79 PRK15370 E3 ubiquitin-protein 87.0 1.5 3.4E-05 41.5 5.9 96 132-248 220-315 (754)
80 PF00646 F-box: F-box domain; 86.7 0.2 4.2E-06 28.9 -0.1 28 7-34 5-32 (48)
81 PF13504 LRR_7: Leucine rich r 84.9 0.66 1.4E-05 20.3 1.2 12 237-248 1-12 (17)
82 KOG0472 Leucine-rich repeat pr 83.3 2.4 5.1E-05 36.7 4.7 112 98-222 428-539 (565)
83 PF13013 F-box-like_2: F-box-l 82.8 1.1 2.5E-05 31.0 2.3 30 42-71 21-50 (109)
84 KOG4237 Extracellular matrix p 80.6 1.3 2.7E-05 38.1 2.2 65 181-251 271-335 (498)
85 PF09372 PRANC: PRANC domain; 79.2 1.9 4.1E-05 29.2 2.5 25 41-65 70-94 (97)
86 KOG0617 Ras suppressor protein 77.6 0.063 1.4E-06 40.4 -5.5 133 104-251 32-164 (264)
87 KOG0274 Cdc4 and related F-box 77.1 1.3 2.9E-05 40.1 1.5 39 39-77 104-142 (537)
88 PF07723 LRR_2: Leucine Rich R 76.0 2.4 5.1E-05 20.9 1.6 8 229-236 18-25 (26)
89 PF00560 LRR_1: Leucine Rich R 73.5 1.8 3.8E-05 20.3 0.7 13 238-251 1-13 (22)
90 PF13306 LRR_5: Leucine rich r 72.7 0.41 8.9E-06 34.0 -2.4 81 155-246 32-112 (129)
91 PF03382 DUF285: Mycoplasma pr 72.4 2.4 5.2E-05 30.0 1.6 11 229-239 78-88 (120)
92 COG4886 Leucine-rich repeat (L 70.6 4.6 9.9E-05 35.1 3.2 15 234-248 252-266 (394)
93 COG4886 Leucine-rich repeat (L 69.4 3.2 7E-05 36.0 2.0 103 133-248 141-243 (394)
94 KOG3735 Tropomodulin and leiom 68.2 27 0.00058 29.5 6.8 24 234-258 252-275 (353)
95 PF03382 DUF285: Mycoplasma pr 65.3 4.3 9.3E-05 28.7 1.6 108 126-240 5-114 (120)
96 KOG0531 Protein phosphatase 1, 63.9 2.5 5.5E-05 37.1 0.3 84 155-250 92-175 (414)
97 KOG3735 Tropomodulin and leiom 60.6 34 0.00073 28.9 6.1 99 119-220 185-292 (353)
98 KOG2997 F-box protein FBX9 [Ge 54.2 4.5 9.9E-05 33.6 0.2 71 7-79 109-186 (366)
99 KOG3926 F-box proteins [Amino 53.6 40 0.00088 27.6 5.3 38 39-76 198-236 (332)
100 PF07735 FBA_2: F-box associat 47.6 65 0.0014 19.8 5.9 18 133-150 12-29 (70)
101 smart00369 LRR_TYP Leucine-ric 44.2 20 0.00044 17.1 1.6 12 237-248 2-13 (26)
102 smart00370 LRR Leucine-rich re 44.2 20 0.00044 17.1 1.6 12 237-248 2-13 (26)
103 KOG0532 Leucine-rich repeat (L 39.5 8.8 0.00019 34.9 -0.3 58 213-277 213-270 (722)
104 PHA02989 ankyrin repeat protei 37.9 28 0.00061 31.3 2.6 28 41-68 457-484 (494)
105 smart00365 LRR_SD22 Leucine-ri 36.9 36 0.00078 16.7 1.8 12 237-248 2-13 (26)
106 smart00446 LRRcap occurring C- 34.7 31 0.00068 17.0 1.3 16 231-246 7-22 (26)
107 PHA03100 ankyrin repeat protei 34.2 31 0.00067 30.7 2.3 27 41-67 446-472 (480)
108 PHA02875 ankyrin repeat protei 30.3 29 0.00063 30.3 1.5 26 40-65 384-409 (413)
109 PF03448 MgtE_N: MgtE intracel 25.5 75 0.0016 21.2 2.6 26 41-66 44-69 (102)
110 PHA02878 ankyrin repeat protei 25.2 47 0.001 29.7 1.9 25 41-65 445-469 (477)
111 PHA02798 ankyrin-like protein; 23.7 52 0.0011 29.6 1.9 25 40-64 461-485 (489)
112 smart00364 LRR_BAC Leucine-ric 22.9 60 0.0013 16.0 1.2 12 237-248 2-13 (26)
113 KOG2502 Tub family proteins [G 22.7 72 0.0016 27.1 2.3 37 41-77 43-87 (355)
114 PF08004 DUF1699: Protein of u 21.6 1.9E+02 0.0042 20.6 3.9 34 184-220 17-50 (131)
No 1
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=3.4e-28 Score=191.12 Aligned_cols=226 Identities=25% Similarity=0.358 Sum_probs=178.5
Q ss_pred CCCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhcC--C--------------------------------------
Q 023680 41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL--G-------------------------------------- 80 (279)
Q Consensus 41 ~~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~~--~-------------------------------------- 80 (279)
-.|..+|||++..||+.|..+++..++.|||+|+++... .
T Consensus 96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~pr 175 (419)
T KOG2120|consen 96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPR 175 (419)
T ss_pred CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCch
Confidence 359999999999999999999999999999999987522 1
Q ss_pred -----------CcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHH
Q 023680 81 -----------LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS 149 (279)
Q Consensus 81 -----------l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~ 149 (279)
+++++++.. ..+...+..+...|.+|+.|.+. ...+.|.....+++ ..+|+.|+|+.|.+++..+
T Consensus 176 lae~~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlE--g~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~ 251 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLE--GLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENA 251 (419)
T ss_pred hhhhhhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhcccc--ccccCcHHHHHHhc-cccceeeccccccccchhH
Confidence 333333331 22334555666778888888888 66778877777777 7889999999999999999
Q ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc-CCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHH
Q 023680 150 LYALAHGCPNLTRLNISGCTSFSDHALAYLCGF-CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVG 228 (279)
Q Consensus 150 l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~-~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~ 228 (279)
+..++++|+.|..|++++|.-.++. +..+..+ .++|..|+|+|+...+.+..+..+...||+|.+||++.|..+++.-
T Consensus 252 ~~ll~~scs~L~~LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~ 330 (419)
T KOG2120|consen 252 LQLLLSSCSRLDELNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC 330 (419)
T ss_pred HHHHHHhhhhHhhcCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH
Confidence 9999999999999999998544444 5555444 4889999999987667777888888889999999999988888855
Q ss_pred HHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 229 VMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 229 l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
+..+ ...+.|++|.++.|-.|.++.+..+ ..=|.+..++++||
T Consensus 331 ~~~~-~kf~~L~~lSlsRCY~i~p~~~~~l-----~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 331 FQEF-FKFNYLQHLSLSRCYDIIPETLLEL-----NSKPSLVYLDVFGC 373 (419)
T ss_pred HHHH-HhcchheeeehhhhcCCChHHeeee-----ccCcceEEEEeccc
Confidence 5555 4568999999999999988888777 44567777777777
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=5.2e-28 Score=197.74 Aligned_cols=232 Identities=29% Similarity=0.474 Sum_probs=180.8
Q ss_pred CCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhcC------------------------------CCcEEEccCCCC
Q 023680 42 EWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL------------------------------GLTHLSLSWCKN 91 (279)
Q Consensus 42 ~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~~------------------------------~l~~l~l~~~~~ 91 (279)
.-..||.|++.+||++|+.+.+.+++++|+.|...+.. .++.+.++++..
T Consensus 71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~ 150 (483)
T KOG4341|consen 71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRA 150 (483)
T ss_pred ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhcccccccccccccc
Confidence 34579999999999999999999999999999977532 367778888877
Q ss_pred cchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCC
Q 023680 92 NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSF 171 (279)
Q Consensus 92 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~ 171 (279)
+.+..+..+...||++++|.+. +|..+|+..+..++++|++|+.|++..|..+++..++.+++.||+|++|++++|..+
T Consensus 151 v~~sslrt~~~~CpnIehL~l~-gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 151 VGDSSLRTFASNCPNIEHLALY-GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred CCcchhhHHhhhCCchhhhhhh-cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 7778888888899999999999 899999999999999999999999999999999999999999999999999998887
Q ss_pred CHHHHHHHHHcCCCCcEEEcCCCCC-------------------------CCCHHHHHHHHhcCCCCCeEeccCCCCCCH
Q 023680 172 SDHALAYLCGFCRKLKILNLCGCVK-------------------------AATDYALQAIGRNCNQLQSLNLGWCEDVGD 226 (279)
Q Consensus 172 ~~~~~~~l~~~~~~L~~L~L~~~~~-------------------------~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~ 226 (279)
+..+++.+.+++..++.+.+.||.. .++|++...+...|..|+.|+.++|..+++
T Consensus 230 ~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d 309 (483)
T KOG4341|consen 230 SGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITD 309 (483)
T ss_pred hcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCch
Confidence 7766666666665555554444443 255555555555566666666666666666
Q ss_pred HHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 227 VGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 227 ~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
..+.++-++|++|+.|-+++|..+++.++.++ .++|+.|.+++.-+|+
T Consensus 310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l----~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTML----GRNCPHLERLDLEECG 357 (483)
T ss_pred HHHHHHhcCCCceEEEeccccchhhhhhhhhh----hcCChhhhhhcccccc
Confidence 66666666666666666666666666666666 6667777777666664
No 3
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.92 E-value=3.2e-26 Score=187.33 Aligned_cols=262 Identities=27% Similarity=0.430 Sum_probs=205.9
Q ss_pred ccccCCChHHHHHHHHHHHHhcccccCCCCCccC--CCCCCCCCCC---------CHHHHHHHcccCC------------
Q 023680 3 GEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMD--GVVITEWKDI---------PMELLLRILSLVD------------ 59 (279)
Q Consensus 3 ~~~~~l~~e~l~~if~~l~~~~~~~~~~~~~~~~--~~~~~~~~~L---------p~~il~~I~~~L~------------ 59 (279)
...|++|+|.+.++|++++......+++++..++ +.+...|... +.-+...+.++-.
T Consensus 70 ~~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r 149 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCR 149 (483)
T ss_pred cccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccc
Confidence 3467999999999999999999999999887554 3444456532 2223333333211
Q ss_pred ---hhHHHHHHhcChhHHHhhcCCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCe
Q 023680 60 ---EPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136 (279)
Q Consensus 60 ---~~~l~~~~~vc~~w~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~ 136 (279)
...+.....+ .++++++.+.+|...++..+..+..+|+++++|.+. .|..+|+..++.+++.|++|+.
T Consensus 150 ~v~~sslrt~~~~--------CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~-~c~~iT~~~Lk~la~gC~kL~~ 220 (483)
T KOG4341|consen 150 AVGDSSLRTFASN--------CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH-SCSSITDVSLKYLAEGCRKLKY 220 (483)
T ss_pred cCCcchhhHHhhh--------CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc-ccchhHHHHHHHHHHhhhhHHH
Confidence 1112222223 345778888888888888888888888888888888 7888888888888888888888
Q ss_pred EecCCCCCCCHHHHHHHHhcCC--------------------------CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEE
Q 023680 137 LDLSKSFKLSDRSLYALAHGCP--------------------------NLTRLNISGCTSFSDHALAYLCGFCRKLKILN 190 (279)
Q Consensus 137 L~L~~~~~~~~~~l~~l~~~~~--------------------------~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~ 190 (279)
|+++.|+.++..+++.+.+.|+ .+.++++..|..++|.++..+...|..|+.|+
T Consensus 221 lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~ 300 (483)
T KOG4341|consen 221 LNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLC 300 (483)
T ss_pred hhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhc
Confidence 8888887776666655555444 45555555666677777777777788899999
Q ss_pred cCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccc
Q 023680 191 LCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVK 270 (279)
Q Consensus 191 L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~ 270 (279)
.++|.+ +++..+.++.+++++|+.|.+..|.++++.++..+..+|+.|+.+++.+|..+++.++.++ ..+||.++
T Consensus 301 ~s~~t~-~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sl----s~~C~~lr 375 (483)
T KOG4341|consen 301 YSSCTD-ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASL----SRNCPRLR 375 (483)
T ss_pred ccCCCC-CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhh----ccCCchhc
Confidence 999987 9999999999999999999999999999999999999999999999999999999989888 99999999
Q ss_pred cccccccc
Q 023680 271 RECSIGCF 278 (279)
Q Consensus 271 ~~~~~~~~ 278 (279)
...+++|-
T Consensus 376 ~lslshce 383 (483)
T KOG4341|consen 376 VLSLSHCE 383 (483)
T ss_pred cCChhhhh
Confidence 99999883
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-19 Score=143.00 Aligned_cols=256 Identities=25% Similarity=0.315 Sum_probs=188.1
Q ss_pred ccCCChHHHHHHHHHHHHhcccccCCCCCccCC--CCCCCCC-------CCCHHHHHHHccc------C-----ChhHHH
Q 023680 5 ATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDG--VVITEWK-------DIPMELLLRILSL------V-----DEPTVI 64 (279)
Q Consensus 5 ~~~l~~e~l~~if~~l~~~~~~~~~~~~~~~~~--~~~~~~~-------~Lp~~il~~I~~~------L-----~~~~l~ 64 (279)
+..+|||++.+||++|...++-..+.||+.+.. .+...|. .+..+++.++.++ + +.+-++
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~prla 177 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPRLA 177 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCchhh
Confidence 358999999999999999999888888875543 3344565 3556677777663 1 111111
Q ss_pred HHHhcCh----------------hHHHhh--cCCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHH
Q 023680 65 VASGVCS----------------GWRDAI--CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEA 126 (279)
Q Consensus 65 ~~~~vc~----------------~w~~~~--~~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~ 126 (279)
....+.+ ..+.+. +..++.+.+.+.. ..+.....++ .-.+|++|+++ .+..++...++.
T Consensus 178 e~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~-LdD~I~~~iA-kN~~L~~lnls-m~sG~t~n~~~l 254 (419)
T KOG2120|consen 178 EHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLR-LDDPIVNTIA-KNSNLVRLNLS-MCSGFTENALQL 254 (419)
T ss_pred hhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccc-cCcHHHHHHh-ccccceeeccc-cccccchhHHHH
Confidence 1111111 111111 2246666666532 2334444454 56899999999 899999999999
Q ss_pred HHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC-CCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHH
Q 023680 127 IANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCT-SFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQA 205 (279)
Q Consensus 127 l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~ 205 (279)
+...|..|..|+|+.|...++..-..++.--++|+.|+++++. ++.+..+..+.+.||+|.+|||+.+.. +++..+..
T Consensus 255 l~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~-l~~~~~~~ 333 (419)
T KOG2120|consen 255 LLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVM-LKNDCFQE 333 (419)
T ss_pred HHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccc-cCchHHHH
Confidence 9999999999999998666666444455556899999999874 345678889999999999999999986 78877777
Q ss_pred HHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccc
Q 023680 206 IGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRE 272 (279)
Q Consensus 206 l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~ 272 (279)
+.+ ++.|++|.++.|+.|....+..+ ...|.|.+|++.|| ++|.+++-+ ...||.++.-
T Consensus 334 ~~k-f~~L~~lSlsRCY~i~p~~~~~l-~s~psl~yLdv~g~--vsdt~mel~----~e~~~~lkin 392 (419)
T KOG2120|consen 334 FFK-FNYLQHLSLSRCYDIIPETLLEL-NSKPSLVYLDVFGC--VSDTTMELL----KEMLSHLKIN 392 (419)
T ss_pred HHh-cchheeeehhhhcCCChHHeeee-ccCcceEEEEeccc--cCchHHHHH----HHhCcccccc
Confidence 765 89999999999999998888776 66799999999997 677777777 5566665543
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.56 E-value=1.5e-14 Score=128.46 Aligned_cols=181 Identities=31% Similarity=0.538 Sum_probs=128.7
Q ss_pred HHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCC-CCCC--CHHHHHHHHhcCCCCCEEEecCCCCCC
Q 023680 96 LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK-SFKL--SDRSLYALAHGCPNLTRLNISGCTSFS 172 (279)
Q Consensus 96 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~-~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~~ 172 (279)
....+...+++++.+.+. .+..+++..+..+...+++|+.|++++ +... .......+...|++|+.|++.+|..++
T Consensus 179 ~~~~l~~~~~~L~~l~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 179 ILLRLLSSCPLLKRLSLS-GCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HHHHHHhhCchhhHhhhc-ccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 344455557888888888 777888777777777788888888875 2222 223344566777888888888876688
Q ss_pred HHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEecc---CCCC
Q 023680 173 DHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLC---GCVC 249 (279)
Q Consensus 173 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~---~c~~ 249 (279)
+.++..++..|++|+.|.+.+|.. +++.++..++..|++|++|++++|..+++.++..+..+|++|+.|.+. +|..
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~-lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~ 336 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSN-LTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPS 336 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCc-cchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCcc
Confidence 888888887788888888777775 788888888888888888888888878888887777778876665444 3445
Q ss_pred CChHHHHHHhh--------ccccCccccccccccccc
Q 023680 250 ITGISSADVII--------RPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 250 i~~~~~~~l~~--------~~~~~c~~~~~~~~~~~~ 278 (279)
+++.++..+.. ...+.|+.+....+.+|.
T Consensus 337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG 373 (482)
T ss_pred HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh
Confidence 77666644333 344777777777766664
No 6
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.51 E-value=2.4e-12 Score=108.32 Aligned_cols=191 Identities=24% Similarity=0.193 Sum_probs=110.1
Q ss_pred cCCCcEEEccCCCCc--chHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHH---hhC-CCCCeEecCCCCCCCHHHHH
Q 023680 78 CLGLTHLSLSWCKNN--MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA---NSC-HDLQDLDLSKSFKLSDRSLY 151 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~---~~~-~~L~~L~L~~~~~~~~~~l~ 151 (279)
.+.+++++++.+... ....+..+... ++|++|+++ ...+++.....+. ..+ ++|+.|+++++ .++.....
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls--~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 155 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLN--NNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCE 155 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEee--CCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHH
Confidence 345777777765443 22233333334 667888777 3345544333322 234 67777887775 45533332
Q ss_pred ---HHHhcCCCCCEEEecCCCCCCHHHHHHHHH---cCCCCcEEEcCCCCCCCCHHHHHHH---HhcCCCCCeEeccCCC
Q 023680 152 ---ALAHGCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCE 222 (279)
Q Consensus 152 ---~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~ 222 (279)
.....+++|++|+++++ .+++.++..+.. .+++|++|+++++. +++.+...+ ...+++|++|++++|.
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 156 ALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG--LTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc--cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 23344567777777775 566555554443 33577777777765 555554433 3356777777777754
Q ss_pred CCCHHHHHHHHhcC----CCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 223 DVGDVGVMNLAYGC----PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 223 ~i~~~~l~~l~~~~----~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
+++.++..+...+ ++|++|++++|. +++.+...+... ...++.++.++.+++.
T Consensus 233 -l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~-~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 233 -LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEV-LAEKESLLELDLRGNK 289 (319)
T ss_pred -CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHH-HhcCCCccEEECCCCC
Confidence 6666666665543 577777777765 666666555443 2333666666666553
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.51 E-value=9.8e-14 Score=123.18 Aligned_cols=170 Identities=36% Similarity=0.598 Sum_probs=139.3
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecC-CCCCCHHH--HHHH
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISG-CTSFSDHA--LAYL 179 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~-~~~~~~~~--~~~l 179 (279)
....++.+.+..............+...+++|+.|.+..+..+++..+..++..+++|+.|++++ +....... ...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 238 (482)
T KOG1947|consen 159 GLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLL 238 (482)
T ss_pred HHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhh
Confidence 34455555555223455666677777779999999999999999999999999999999999987 33333322 4446
Q ss_pred HHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHh
Q 023680 180 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVI 259 (279)
Q Consensus 180 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~ 259 (279)
...|++|+.|+++++.. ++|.++..++..|++|+.|.+.+|..+++.++..++..|+.|++|++++|..+++.++..+
T Consensus 239 ~~~~~~L~~l~l~~~~~-isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~- 316 (482)
T KOG1947|consen 239 LSICRKLKSLDLSGCGL-VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL- 316 (482)
T ss_pred hhhcCCcCccchhhhhc-cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-
Confidence 67789999999999986 8999999999999999999999998899999999999999999999999999999999888
Q ss_pred hccccCcccccccccccc
Q 023680 260 IRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 260 ~~~~~~c~~~~~~~~~~~ 277 (279)
..+||+++.+...+|
T Consensus 317 ---~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 317 ---LKNCPNLRELKLLSL 331 (482)
T ss_pred ---HHhCcchhhhhhhhc
Confidence 556887776655443
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=3e-12 Score=107.69 Aligned_cols=193 Identities=23% Similarity=0.175 Sum_probs=135.0
Q ss_pred CCCcEEEccCCCCcc-hHH---HHHHcccCCCceEEEeeCCCCCC--CHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHH
Q 023680 79 LGLTHLSLSWCKNNM-NNL---VLSLAPKLTKLQTLVLRQDKPQL--EDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA 152 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~-~~~---~~~l~~~~~~L~~L~l~~~~~~~--~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 152 (279)
+.++++++++..... ... +......+++|++|+++ ++... ....+..+... ++|++|+++++ .+++.+...
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~-~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~-~~~~~~~~~ 127 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLS-DNALGPDGCGVLESLLRS-SSLQELKLNNN-GLGDRGLRL 127 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEcc-CCCCChhHHHHHHHHhcc-CcccEEEeeCC-ccchHHHHH
Confidence 347788776654321 111 22233347899999999 45432 23344444454 77999999995 677666655
Q ss_pred HH---hcC-CCCCEEEecCCCCCCHHHHHH---HHHcCCCCcEEEcCCCCCCCCHHHHHHHHh---cCCCCCeEeccCCC
Q 023680 153 LA---HGC-PNLTRLNISGCTSFSDHALAY---LCGFCRKLKILNLCGCVKAATDYALQAIGR---NCNQLQSLNLGWCE 222 (279)
Q Consensus 153 l~---~~~-~~L~~L~L~~~~~~~~~~~~~---l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~ 222 (279)
+. ..+ ++|+.|++++| .++..+... ....+++|++|+++++. +++.++..+.. ..++|++|++++|.
T Consensus 128 l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 204 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRN-RLEGASCEALAKALRANRDLKELNLANNG--IGDAGIRALAEGLKANCNLEVLDLNNNG 204 (319)
T ss_pred HHHHHHhCCCCceEEEcCCC-cCCchHHHHHHHHHHhCCCcCEEECcCCC--CchHHHHHHHHHHHhCCCCCEEeccCCc
Confidence 43 344 89999999997 566444333 33456799999999976 77776665533 45699999999975
Q ss_pred CCCHHHHHH---HHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 223 DVGDVGVMN---LAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 223 ~i~~~~l~~---l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
+++.+... .+..+++|++|++++|. +++.++..+........++++.+++.+|.|
T Consensus 205 -i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 205 -LTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred -cChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 77666543 44567899999999986 888888888766555788999999999975
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.01 E-value=6.9e-09 Score=84.52 Aligned_cols=33 Identities=27% Similarity=0.123 Sum_probs=17.0
Q ss_pred CcEEEccCCCC--cchHHHHHHcccCCCceEEEee
Q 023680 81 LTHLSLSWCKN--NMNNLVLSLAPKLTKLQTLVLR 113 (279)
Q Consensus 81 l~~l~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~ 113 (279)
++.++++.... .....+..+...+..|++|.+.
T Consensus 94 L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~ 128 (382)
T KOG1909|consen 94 LQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLN 128 (382)
T ss_pred eeEeeccccccCccchHHHHHHHHhccCHHHHhhh
Confidence 66666664321 2223444444456666666665
No 10
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.7e-10 Score=96.21 Aligned_cols=171 Identities=18% Similarity=0.130 Sum_probs=85.3
Q ss_pred CcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCC
Q 023680 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (279)
Q Consensus 81 l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 160 (279)
++.+.+.++... ..........|++++.|+++ ....-.-..+..++..+|+|+.|+|+.. .+....-.......++|
T Consensus 123 L~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS-~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 123 LREISLDNYRVE-DAGIEEYSKILPNVRDLDLS-RNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHL 199 (505)
T ss_pred hhheeecCcccc-ccchhhhhhhCCcceeecch-hhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchhhhhhh
Confidence 555555554321 11122445556666666666 3333333444555566666666666542 11111101111134555
Q ss_pred CEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCC------------------------CCCCCHHHHHHHHhcCCCCCeE
Q 023680 161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC------------------------VKAATDYALQAIGRNCNQLQSL 216 (279)
Q Consensus 161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~------------------------~~~~~~~~~~~l~~~~~~L~~L 216 (279)
+.|.|+.| +++...+..+...||+|+.|.+.+. +. ++-..+..+ ..+|.|+.|
T Consensus 200 K~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~-~~l~~L~~L 276 (505)
T KOG3207|consen 200 KQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKV-GTLPGLNQL 276 (505)
T ss_pred heEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-ccccccccc-ccccchhhh
Confidence 66666665 5555555555555555555555543 21 222222222 246777777
Q ss_pred eccCCCCCCHHHH-----HHHHhcCCCCCEEeccCCCCCChHHHHHH
Q 023680 217 NLGWCEDVGDVGV-----MNLAYGCPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 217 ~l~~~~~i~~~~l-----~~l~~~~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
+++.|. |++-.. .......++|++|++..|.-....++.++
T Consensus 277 nls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l 322 (505)
T KOG3207|consen 277 NLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHL 322 (505)
T ss_pred hccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchh
Confidence 776643 333221 11234568899999888875455666555
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.92 E-value=6.4e-09 Score=84.71 Aligned_cols=49 Identities=27% Similarity=0.318 Sum_probs=34.4
Q ss_pred cccCCCceEEEeeCCCCCCCHH---HHHHHHhhCCCCCeEecCCCCCCCHHHHHH
Q 023680 101 APKLTKLQTLVLRQDKPQLEDN---AVEAIANSCHDLQDLDLSKSFKLSDRSLYA 152 (279)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~---~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 152 (279)
...+|+|+.|+|+ ...+.+. .+..+..++.+|++|.|.+| +++..+-..
T Consensus 88 L~~~~~L~~ldLS--DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~ 139 (382)
T KOG1909|consen 88 LLGCPKLQKLDLS--DNAFGPKGIRGLEELLSSCTDLEELYLNNC-GLGPEAGGR 139 (382)
T ss_pred HhcCCceeEeecc--ccccCccchHHHHHHHHhccCHHHHhhhcC-CCChhHHHH
Confidence 3467899999999 4444443 45556677999999999986 666555433
No 12
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.92 E-value=5e-09 Score=95.67 Aligned_cols=150 Identities=19% Similarity=0.225 Sum_probs=111.2
Q ss_pred CCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 023680 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (279)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (279)
-.+|++|+++ +...+...+...+...+|+|++|.+.+ ..+..+.+..+..++|+|..|+++++ ++++- . ...++
T Consensus 121 r~nL~~LdI~-G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~-GIS~L 194 (699)
T KOG3665|consen 121 RQNLQHLDIS-GSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGT-NISNL--S-GISRL 194 (699)
T ss_pred HHhhhhcCcc-ccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCC-CccCc--H-HHhcc
Confidence 3588999998 677777788888888899999999988 56777778888888999999999885 55542 2 22367
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHH-HHHHH---hcCCCCCEEeccCCCCCChHHHHHHh
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVG-VMNLA---YGCPDLRSLDLCGCVCITGISSADVI 259 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~-l~~l~---~~~~~L~~L~l~~c~~i~~~~~~~l~ 259 (279)
++|+.|.+.+... -+-..+..++. +++|+.||++.....+... +...+ ..+|+|+.||.|| +.++++.++.++
T Consensus 195 knLq~L~mrnLe~-e~~~~l~~LF~-L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll 271 (699)
T KOG3665|consen 195 KNLQVLSMRNLEF-ESYQDLIDLFN-LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELL 271 (699)
T ss_pred ccHHHHhccCCCC-CchhhHHHHhc-ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHH
Confidence 8888888877652 33356667765 8999999998765444431 22222 3479999999999 669999999887
Q ss_pred hcc
Q 023680 260 IRP 262 (279)
Q Consensus 260 ~~~ 262 (279)
...
T Consensus 272 ~sH 274 (699)
T KOG3665|consen 272 NSH 274 (699)
T ss_pred HhC
Confidence 644
No 13
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.87 E-value=6.8e-09 Score=94.79 Aligned_cols=138 Identities=22% Similarity=0.207 Sum_probs=109.6
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
-.+|++|++++...++..-...+...+|+|++|.+.+- .+....+..+..++|+|+.||+++++ +++- ..+ .++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~Tn--I~nl--~GI-S~L 194 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTN--ISNL--SGI-SRL 194 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCC--ccCc--HHH-hcc
Confidence 57999999999777777778889999999999999985 66677799999999999999999987 5544 334 468
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChH-HHHHHhhccccCccccccccccc
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGI-SSADVIIRPSRNCCVVKRECSIG 276 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~-~~~~l~~~~~~~c~~~~~~~~~~ 276 (279)
++|+.|.+++-.--+...+..++ ++++|+.||+|.-....+. -+.+.++.+.. +|.|+-++.+|
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~-LpeLrfLDcSg 259 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMV-LPELRFLDCSG 259 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhccc-CccccEEecCC
Confidence 99999999985544446677775 4799999999997766655 45555566555 99999888765
No 14
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.85 E-value=4.5e-09 Score=61.71 Aligned_cols=37 Identities=32% Similarity=0.527 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhcC
Q 023680 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (279)
Q Consensus 43 ~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~~ 79 (279)
|..||+|++.+||++|+..|+.+++.|||+|+.++..
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~ 37 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND 37 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence 6789999999999999999999999999999998743
No 15
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.2e-09 Score=91.39 Aligned_cols=146 Identities=24% Similarity=0.216 Sum_probs=108.3
Q ss_pred ccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 023680 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (279)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 181 (279)
+...+|+.+.+. ...+........++.|++++.|+|++.-.-....+..+++.+|+|+.|+++.+ .+....-...-.
T Consensus 118 sn~kkL~~IsLd--n~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~~~~ 194 (505)
T KOG3207|consen 118 SNLKKLREISLD--NYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSNTTL 194 (505)
T ss_pred hhHHhhhheeec--CccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCccccchh
Confidence 356788888888 45566655556777899999999999766677889999999999999999874 222111111112
Q ss_pred cCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHH-HHHHhcCCCCCEEeccCCCCCChHHH
Q 023680 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGV-MNLAYGCPDLRSLDLCGCVCITGISS 255 (279)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l-~~l~~~~~~L~~L~l~~c~~i~~~~~ 255 (279)
.+++|+.|.|+.|+ ++......+...+|+|+.|.+.++..+..... ..+ ...|+.|||+++..++...+
T Consensus 195 ~l~~lK~L~l~~CG--ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i---~~~L~~LdLs~N~li~~~~~ 264 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCG--LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI---LQTLQELDLSNNNLIDFDQG 264 (505)
T ss_pred hhhhhheEEeccCC--CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh---hhHHhhccccCCcccccccc
Confidence 56899999999999 78888888888899999999988644333222 222 36799999999988876633
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.68 E-value=3.7e-08 Score=95.03 Aligned_cols=133 Identities=18% Similarity=0.148 Sum_probs=69.4
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
.++|++|+++++ .++.. +......+++|++|+++++ .+... +..-...+++|++|+++++. ++......+ ..+
T Consensus 139 l~~L~~L~Ls~n-~~~~~-~p~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~n~--l~~~~p~~l-~~l 211 (968)
T PLN00113 139 IPNLETLDLSNN-MLSGE-IPNDIGSFSSLKVLDLGGN-VLVGK-IPNSLTNLTSLEFLTLASNQ--LVGQIPREL-GQM 211 (968)
T ss_pred cCCCCEEECcCC-ccccc-CChHHhcCCCCCEEECccC-ccccc-CChhhhhCcCCCeeeccCCC--CcCcCChHH-cCc
Confidence 556666666653 22211 1122344567777777664 22221 11112356677777777654 332222233 246
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
++|+.|+++++. ++.. +...+.++++|++|++++|. +++..... ..+++.|+.+.+.+|.
T Consensus 212 ~~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~~p~~-----l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 212 KSLKWIYLGYNN-LSGE-IPYEIGGLTSLNHLDLVYNN-LTGPIPSS-----LGNLKNLQYLFLYQNK 271 (968)
T ss_pred CCccEEECcCCc-cCCc-CChhHhcCCCCCEEECcCce-eccccChh-----HhCCCCCCEEECcCCe
Confidence 777777777654 3322 12223566788888888875 43322222 3566677777766654
No 17
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.62 E-value=6.6e-08 Score=93.35 Aligned_cols=38 Identities=16% Similarity=-0.015 Sum_probs=19.0
Q ss_pred cCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 235 GCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 235 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
++++|++|++++|. +++..... ..+++.++.++..+|.
T Consensus 282 ~l~~L~~L~Ls~n~-l~~~~p~~-----~~~l~~L~~L~l~~n~ 319 (968)
T PLN00113 282 SLQKLISLDLSDNS-LSGEIPEL-----VIQLQNLEILHLFSNN 319 (968)
T ss_pred hccCcCEEECcCCe-eccCCChh-----HcCCCCCcEEECCCCc
Confidence 34556666666554 32221111 2455666666666653
No 18
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.43 E-value=1.8e-08 Score=76.37 Aligned_cols=128 Identities=27% Similarity=0.335 Sum_probs=43.8
Q ss_pred CCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 023680 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (279)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (279)
.+++.|+|. ...++. +..+...+.+|+.|+++++ .++. +++ ..+++|+.|.++++ .++.-+ ..+...+
T Consensus 19 ~~~~~L~L~--~n~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~l~~l----~~L~~L~~L~L~~N-~I~~i~-~~l~~~l 87 (175)
T PF14580_consen 19 VKLRELNLR--GNQIST--IENLGATLDKLEVLDLSNN-QITKLEGL----PGLPRLKTLDLSNN-RISSIS-EGLDKNL 87 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS---S--TT--------TT--EEE--SS----S-C-HHHHHH-
T ss_pred ccccccccc--cccccc--ccchhhhhcCCCEEECCCC-CCccccCc----cChhhhhhcccCCC-CCCccc-cchHHhC
Confidence 356777777 333332 3344444677888888875 3332 222 23578888888774 444321 2233457
Q ss_pred CCCcEEEcCCCCCCCCHH-HHHHHHhcCCCCCeEeccCCCCCCHH--HHHHHHhcCCCCCEEeccCC
Q 023680 184 RKLKILNLCGCVKAATDY-ALQAIGRNCNQLQSLNLGWCEDVGDV--GVMNLAYGCPDLRSLDLCGC 247 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~i~~~--~l~~l~~~~~~L~~L~l~~c 247 (279)
|+|++|.+++.. +.+. .+..+. .+|+|+.|++.+++ ++.. .-..++..+|+|+.||-...
T Consensus 88 p~L~~L~L~~N~--I~~l~~l~~L~-~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 88 PNLQELYLSNNK--ISDLNELEPLS-SLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp TT--EEE-TTS-----SCCCCGGGG-G-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred CcCCEEECcCCc--CCChHHhHHHH-cCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 888888887743 4332 233333 57888888887765 3322 23344566788888876553
No 19
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=3.8e-07 Score=69.15 Aligned_cols=83 Identities=27% Similarity=0.394 Sum_probs=48.0
Q ss_pred CeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCC
Q 023680 135 QDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQ 214 (279)
Q Consensus 135 ~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~ 214 (279)
+.++-++ ..+..+++..+. .++.|+.|.+.+|..+.|.++..+..-.|+|+.|+|++|.. ||+.++..+.+ +++|+
T Consensus 104 eaVDAsd-s~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~r-IT~~GL~~L~~-lknLr 179 (221)
T KOG3864|consen 104 EAVDASD-SSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPR-ITDGGLACLLK-LKNLR 179 (221)
T ss_pred EEEecCC-chHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCe-echhHHHHHHH-hhhhH
Confidence 4444444 345555555542 35666666666666666666666665556666666666665 66666665543 56666
Q ss_pred eEeccCC
Q 023680 215 SLNLGWC 221 (279)
Q Consensus 215 ~L~l~~~ 221 (279)
.|.+.+-
T Consensus 180 ~L~l~~l 186 (221)
T KOG3864|consen 180 RLHLYDL 186 (221)
T ss_pred HHHhcCc
Confidence 6666553
No 20
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.28 E-value=2.7e-07 Score=54.34 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=31.3
Q ss_pred CCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhc
Q 023680 42 EWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78 (279)
Q Consensus 42 ~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~ 78 (279)
+|.+||+|++.+||++++..++..++.||++|+.++.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence 4778999999999999999999999999999998763
No 21
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.20 E-value=3.8e-07 Score=69.11 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=4.4
Q ss_pred cCCCCCEEeccCCC
Q 023680 235 GCPDLRSLDLCGCV 248 (279)
Q Consensus 235 ~~~~L~~L~l~~c~ 248 (279)
.+|+|++|++.+|+
T Consensus 111 ~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 111 SLPKLRVLSLEGNP 124 (175)
T ss_dssp G-TT--EEE-TT-G
T ss_pred cCCCcceeeccCCc
Confidence 34555555555544
No 22
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.09 E-value=1.4e-05 Score=78.50 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 023680 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT 251 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 251 (279)
+++|+.|++++|..+.. +..-+.++++|+.|++++|..+.
T Consensus 777 ~~sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcC
Confidence 35666777766543332 22224566777777777776543
No 23
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.08 E-value=3.7e-06 Score=47.50 Aligned_cols=34 Identities=29% Similarity=0.421 Sum_probs=31.4
Q ss_pred CCHHHHHHHcccCChhHHHHHHhcChhHHHhhcC
Q 023680 46 IPMELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (279)
Q Consensus 46 Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~~ 79 (279)
||+|++..||.+++..++..++.|||+|+.++..
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999999999999998643
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.07 E-value=1e-05 Score=79.32 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=11.0
Q ss_pred hcCCCCCEEeccCCCCCC
Q 023680 234 YGCPDLRSLDLCGCVCIT 251 (279)
Q Consensus 234 ~~~~~L~~L~l~~c~~i~ 251 (279)
..+++|+.|++++|..+.
T Consensus 866 ~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred hcCCCCCEEECCCCCCcC
Confidence 445666666666665554
No 25
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.04 E-value=7.6e-06 Score=62.23 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=79.7
Q ss_pred ceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCC
Q 023680 107 LQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKL 186 (279)
Q Consensus 107 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L 186 (279)
++.++-+ ...+....+..+.. ++.|+.|.+.+|..+.|.++..+..-.|+|+.|++++|..+|+.++.-+. .+++|
T Consensus 103 IeaVDAs--ds~I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknL 178 (221)
T KOG3864|consen 103 IEAVDAS--DSSIMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNL 178 (221)
T ss_pred EEEEecC--CchHHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-Hhhhh
Confidence 3444444 44566667777766 89999999999999999999999998999999999999999999999888 67999
Q ss_pred cEEEcCCCCCCCCHHHHHH-HHhcCCCCCeE
Q 023680 187 KILNLCGCVKAATDYALQA-IGRNCNQLQSL 216 (279)
Q Consensus 187 ~~L~L~~~~~~~~~~~~~~-l~~~~~~L~~L 216 (279)
+.|.|.+.......+.+.. +...+|+++..
T Consensus 179 r~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 179 RRLHLYDLPYVANLELVQRQLEEALPKCDIV 209 (221)
T ss_pred HHHHhcCchhhhchHHHHHHHHHhCccccee
Confidence 9999987664222222222 33456655443
No 26
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.89 E-value=1.7e-05 Score=39.86 Aligned_cols=24 Identities=46% Similarity=0.861 Sum_probs=18.6
Q ss_pred CCCCCEEeccCCCCCChHHHHHHh
Q 023680 236 CPDLRSLDLCGCVCITGISSADVI 259 (279)
Q Consensus 236 ~~~L~~L~l~~c~~i~~~~~~~l~ 259 (279)
|++|++|++++|..|||.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 577888888888888888887764
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=1.3e-05 Score=64.68 Aligned_cols=162 Identities=19% Similarity=0.127 Sum_probs=91.3
Q ss_pred CcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCC
Q 023680 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (279)
Q Consensus 81 l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 160 (279)
++++++.+.......-+.++....|+|+.|+++ |..+.. .+..+.....+|++|.|.+ +.++......+....|.+
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls--~N~L~s-~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLS--CNSLSS-DIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeecc--CCcCCC-ccccCcccccceEEEEEcC-CCCChhhhhhhhhcchhh
Confidence 566666665555556667777788888888887 555543 2222322256778888877 577777777776666666
Q ss_pred CEEEecCCC---------------------------CCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 023680 161 TRLNISGCT---------------------------SFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQL 213 (279)
Q Consensus 161 ~~L~L~~~~---------------------------~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L 213 (279)
+.|.++.++ .........+.+-+|++..+-+..|+ +.+..-+.-...+|.+
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P--lK~~s~ek~se~~p~~ 226 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP--LKTESSEKGSEPFPSL 226 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc--ccchhhcccCCCCCcc
Confidence 666555321 11111223334445666655555543 3333333333345555
Q ss_pred CeEeccCCCCCC-HHHHHHHHhcCCCCCEEeccCCCCC
Q 023680 214 QSLNLGWCEDVG-DVGVMNLAYGCPDLRSLDLCGCVCI 250 (279)
Q Consensus 214 ~~L~l~~~~~i~-~~~l~~l~~~~~~L~~L~l~~c~~i 250 (279)
--|+++.+. |+ ...+.++ .+.++|..|.+++.+..
T Consensus 227 ~~LnL~~~~-idswasvD~L-n~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 227 SCLNLGANN-IDSWASVDAL-NGFPQLVDLRVSENPLS 262 (418)
T ss_pred hhhhhcccc-cccHHHHHHH-cCCchhheeeccCCccc
Confidence 566665533 43 3344444 56678888888777643
No 28
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.86 E-value=4.7e-06 Score=72.92 Aligned_cols=110 Identities=22% Similarity=0.144 Sum_probs=50.9
Q ss_pred CCCCCeEecCCC--CCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHh
Q 023680 131 CHDLQDLDLSKS--FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR 208 (279)
Q Consensus 131 ~~~L~~L~L~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 208 (279)
++.|+.|+|+.. ..++...+..+ .+|+.|+|+.+ .++. ..........+|+.|+|+...-...-+.......
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~N-si~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~ 389 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHN-SIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN 389 (873)
T ss_pred cccceeEeccccccccCChhHHHHH----HHhhhhccccc-chHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc
Confidence 566666666653 22223333222 45666666553 2211 1111112345667776665321111111222334
Q ss_pred cCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 209 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
.++.|+.|.+.++. +..-.-.+ +.+.++||+||+.++.
T Consensus 390 gl~~LrkL~l~gNq-lk~I~krA-fsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQ-LKSIPKRA-FSGLEALEHLDLGDNA 427 (873)
T ss_pred cchhhhheeecCce-eeecchhh-hccCcccceecCCCCc
Confidence 46777777776632 33322222 2455777777777654
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.81 E-value=0.00042 Score=55.47 Aligned_cols=152 Identities=22% Similarity=0.178 Sum_probs=77.7
Q ss_pred ccCCCceEEEeeCCCCCCC---HHHHHHHHhhCCCCCeEecCCCCCCCHHH-------HHHHH-----hcCCCCCEEEec
Q 023680 102 PKLTKLQTLVLRQDKPQLE---DNAVEAIANSCHDLQDLDLSKSFKLSDRS-------LYALA-----HGCPNLTRLNIS 166 (279)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~---~~~l~~l~~~~~~L~~L~L~~~~~~~~~~-------l~~l~-----~~~~~L~~L~L~ 166 (279)
-.||+++.++|+ .. .+. ...+..+..+..+|.+|.++++ ++...+ +..++ ..-|.|++....
T Consensus 89 lkcp~l~~v~LS-DN-Afg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 89 LKCPRLQKVDLS-DN-AFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred hcCCcceeeecc-cc-ccCcccchHHHHHHhcCCCceeEEeecC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 357777777776 22 222 2233334444667777777764 343221 11111 123566666665
Q ss_pred CCCC--CCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHH----HhcCCCCCeEeccCCCCCCHHHHHHHHhc---CC
Q 023680 167 GCTS--FSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAI----GRNCNQLQSLNLGWCEDVGDVGVMNLAYG---CP 237 (279)
Q Consensus 167 ~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~i~~~~l~~l~~~---~~ 237 (279)
.+.- .+..-.....+.-.+|+.+.+-+.. |.+++...+ ..++.+|+.|++..+. +|-.+-..++.. -+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNg--Irpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~ 242 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNG--IRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWN 242 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecC--cCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccc
Confidence 4321 1222233333344667777776633 555554432 2356777777777643 454443333322 24
Q ss_pred CCCEEeccCCCCCChHHHHHHhh
Q 023680 238 DLRSLDLCGCVCITGISSADVII 260 (279)
Q Consensus 238 ~L~~L~l~~c~~i~~~~~~~l~~ 260 (279)
.|++|.+..|- ++..|..+++.
T Consensus 243 ~lrEL~lnDCl-ls~~G~~~v~~ 264 (388)
T COG5238 243 LLRELRLNDCL-LSNEGVKSVLR 264 (388)
T ss_pred hhhhccccchh-hccccHHHHHH
Confidence 56777777775 56666666543
No 30
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.77 E-value=1.1e-05 Score=65.11 Aligned_cols=182 Identities=19% Similarity=0.134 Sum_probs=104.5
Q ss_pred EEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCE
Q 023680 83 HLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR 162 (279)
Q Consensus 83 ~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 162 (279)
-+.+.++...+...+..+...+.+++.++|. +..--.-+.+..+.+++|.|+.|+|+.. .+.. .+..+.....+|++
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~-~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLT-GNLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRV 125 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcc-cchhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEE
Confidence 3344454444445567778888999999998 4433344566778888999999999874 3332 12222223458999
Q ss_pred EEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCC---CCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCV---KAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 163 L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~---~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
|.|.+ +++.-..........|.+++|+++..+ -.++++..+.. .+.++.|+...|...-......+.+..|++
T Consensus 126 lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~---s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv 201 (418)
T KOG2982|consen 126 LVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDW---STEVLTLHQLPCLEQLWLNKNKLSRIFPNV 201 (418)
T ss_pred EEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccccc---chhhhhhhcCCcHHHHHHHHHhHHhhcccc
Confidence 99987 577777778788788888888777541 01233322221 234555555555432223333344445666
Q ss_pred CEEeccCCCCCChHHHHHHhhccccCcccccc
Q 023680 240 RSLDLCGCVCITGISSADVIIRPSRNCCVVKR 271 (279)
Q Consensus 240 ~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~ 271 (279)
..+-+..|+.-+..+-+..=+.+.-.|..|.+
T Consensus 202 ~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~ 233 (418)
T KOG2982|consen 202 NSVFVCEGPLKTESSEKGSEPFPSLSCLNLGA 233 (418)
T ss_pred hheeeecCcccchhhcccCCCCCcchhhhhcc
Confidence 66666666544444433333333333444433
No 31
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.59 E-value=2.2e-05 Score=68.91 Aligned_cols=153 Identities=24% Similarity=0.190 Sum_probs=97.0
Q ss_pred CcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCC
Q 023680 81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160 (279)
Q Consensus 81 l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L 160 (279)
.+.|++++..-. ...+.. ....|+|+.+.+. ...++ .+..+.....+|+.|+|.+. .++...-+.+ +..|.|
T Consensus 80 t~~LdlsnNkl~-~id~~~-f~nl~nLq~v~l~--~N~Lt--~IP~f~~~sghl~~L~L~~N-~I~sv~se~L-~~l~al 151 (873)
T KOG4194|consen 80 TQTLDLSNNKLS-HIDFEF-FYNLPNLQEVNLN--KNELT--RIPRFGHESGHLEKLDLRHN-LISSVTSEEL-SALPAL 151 (873)
T ss_pred eeeeeccccccc-cCcHHH-HhcCCcceeeeec--cchhh--hcccccccccceeEEeeecc-ccccccHHHH-HhHhhh
Confidence 456888775332 222232 3368999999998 33332 22333344678999999874 4443333333 234889
Q ss_pred CEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 023680 161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240 (279)
Q Consensus 161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 240 (279)
++|+|+.+ .++.--...+ ..-+++++|+|++.. |++-+...+.. +.+|..|.++.+ .++.-.... ++++|+|+
T Consensus 152 rslDLSrN-~is~i~~~sf-p~~~ni~~L~La~N~--It~l~~~~F~~-lnsL~tlkLsrN-rittLp~r~-Fk~L~~L~ 224 (873)
T KOG4194|consen 152 RSLDLSRN-LISEIPKPSF-PAKVNIKKLNLASNR--ITTLETGHFDS-LNSLLTLKLSRN-RITTLPQRS-FKRLPKLE 224 (873)
T ss_pred hhhhhhhc-hhhcccCCCC-CCCCCceEEeecccc--ccccccccccc-cchheeeecccC-cccccCHHH-hhhcchhh
Confidence 99999874 3332111111 123689999999844 77777666654 668999999984 477655444 37789999
Q ss_pred EEeccCCC
Q 023680 241 SLDLCGCV 248 (279)
Q Consensus 241 ~L~l~~c~ 248 (279)
.|++.++.
T Consensus 225 ~LdLnrN~ 232 (873)
T KOG4194|consen 225 SLDLNRNR 232 (873)
T ss_pred hhhccccc
Confidence 99999875
No 32
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.46 E-value=0.00018 Score=36.01 Aligned_cols=24 Identities=38% Similarity=0.771 Sum_probs=17.5
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHH
Q 023680 210 CNQLQSLNLGWCEDVGDVGVMNLA 233 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l~~l~ 233 (279)
|++|++|++++|..|||.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 567777777777777777777664
No 33
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.44 E-value=0.0019 Score=51.82 Aligned_cols=164 Identities=20% Similarity=0.141 Sum_probs=92.8
Q ss_pred CCCcEEEccCCCC--cchHHHHHHcccCCCceEEEeeCCCCCCCHH-------HHHHHH-----hhCCCCCeEecCCC--
Q 023680 79 LGLTHLSLSWCKN--NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDN-------AVEAIA-----NSCHDLQDLDLSKS-- 142 (279)
Q Consensus 79 ~~l~~l~l~~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-------~l~~l~-----~~~~~L~~L~L~~~-- 142 (279)
++++.++++.... .....+..+.....+|++|.++ ++ .+.+. .+..++ ..-|.|++.....+
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~-Nn-GlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl 169 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLN-NN-GLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL 169 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEee-cC-CCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence 4588888875432 2233444455577888999888 33 23222 111221 22567777776553
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHH----HcCCCCcEEEcCCCCCCCCHHHHHHHH---hcCCCCCe
Q 023680 143 FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC----GFCRKLKILNLCGCVKAATDYALQAIG---RNCNQLQS 215 (279)
Q Consensus 143 ~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~----~~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~L~~ 215 (279)
.+-+-.......+.-.+|+.+.+..+ ++...++..++ ..+.+|+.|+|.... .+-.+-..++ ...+.|++
T Consensus 170 engs~~~~a~~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt--ft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 170 ENGSKELSAALLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT--FTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred ccCcHHHHHHHHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc--hhhhhHHHHHHHhcccchhhh
Confidence 12233444455555567888888763 66666655543 356778888887633 5555544432 23566788
Q ss_pred EeccCCCCCCHHHHHHHHhc-----CCCCCEEeccCCC
Q 023680 216 LNLGWCEDVGDVGVMNLAYG-----CPDLRSLDLCGCV 248 (279)
Q Consensus 216 L~l~~~~~i~~~~l~~l~~~-----~~~L~~L~l~~c~ 248 (279)
|.+..|. ++..+...++.. .|+|..|...++.
T Consensus 247 L~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 247 LRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred ccccchh-hccccHHHHHHHhhhhcCCCccccccchhh
Confidence 8887775 444444444332 3677777666653
No 34
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.30 E-value=5.1e-05 Score=69.88 Aligned_cols=37 Identities=30% Similarity=0.470 Sum_probs=20.9
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
.+.|+.+|++. ++++...+...... |+|++||++||.
T Consensus 451 l~qL~~lDlS~-N~L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 451 LPQLKVLDLSC-NNLSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred cCcceEEeccc-chhhhhhhhhhCCC-cccceeeccCCc
Confidence 56666666665 33555444433332 566777776665
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.11 E-value=0.00032 Score=56.97 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=40.6
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
+..|++|+|+++ .++ .+..-.+-.|.++.|+++++ ++.. +..+ +++++|+.|+|++.. + .........+
T Consensus 283 Wq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~N-~i~~--v~nL-a~L~~L~~LDLS~N~--L--s~~~Gwh~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQN-RIRT--VQNL-AELPQLQLLDLSGNL--L--AECVGWHLKL 351 (490)
T ss_pred Hhhhhhcccccc-chh--hhhhhhhhccceeEEecccc-ceee--ehhh-hhcccceEeecccch--h--HhhhhhHhhh
Confidence 556777777763 332 22222333477777777764 3332 2222 256777777777632 1 1222222334
Q ss_pred CCCCeEeccCC
Q 023680 211 NQLQSLNLGWC 221 (279)
Q Consensus 211 ~~L~~L~l~~~ 221 (279)
-|++.|.++++
T Consensus 352 GNIKtL~La~N 362 (490)
T KOG1259|consen 352 GNIKTLKLAQN 362 (490)
T ss_pred cCEeeeehhhh
Confidence 55555555553
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.05 E-value=2.3e-05 Score=48.58 Aligned_cols=60 Identities=23% Similarity=0.242 Sum_probs=31.5
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
|+|++|+++++. ++.-.-. ....+++|++|+++++. ++...- ..+.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~--l~~i~~~-~f~~l~~L~~L~l~~N~-l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNK--LTEIPPD-SFSNLPNLETLDLSNNN-LTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSST--ESEECTT-TTTTGTTESEEEETSSS-ESEEET-TTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCC--CCccCHH-HHcCCCCCCEeEccCCc-cCccCH-HHHcCCCCCCEEeCcCCc
Confidence 456666666653 3322111 22346677777777643 332111 123566777777777764
No 37
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.03 E-value=0.00058 Score=39.04 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT 251 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 251 (279)
++|++|+++++. |++ +...+.++++|+.|++++|. ++
T Consensus 1 ~~L~~L~l~~N~-i~~--l~~~l~~l~~L~~L~l~~N~-i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITD--LPPELSNLPNLETLNLSNNP-IS 37 (44)
T ss_dssp TT-SEEEETSSS--SS--HGGHGTTCTTSSEEEETSSC-CS
T ss_pred CcceEEEccCCC-Ccc--cCchHhCCCCCCEEEecCCC-CC
Confidence 467777777743 554 44434667777777777765 44
No 38
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.81 E-value=4e-05 Score=68.01 Aligned_cols=84 Identities=23% Similarity=0.254 Sum_probs=36.9
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (279)
+..+|++|.|+ ...+....++.+.. +.+|+.|.+++. .-+-..+..-...+.+|..++|+.+ .++. ++.-.-.
T Consensus 171 RL~~LqtL~Ls--~NPL~hfQLrQLPs-mtsL~vLhms~T-qRTl~N~Ptsld~l~NL~dvDlS~N-~Lp~--vPecly~ 243 (1255)
T KOG0444|consen 171 RLSMLQTLKLS--NNPLNHFQLRQLPS-MTSLSVLHMSNT-QRTLDNIPTSLDDLHNLRDVDLSEN-NLPI--VPECLYK 243 (1255)
T ss_pred HHhhhhhhhcC--CChhhHHHHhcCcc-chhhhhhhcccc-cchhhcCCCchhhhhhhhhcccccc-CCCc--chHHHhh
Confidence 34456666666 33344444443332 445555555552 2232223333333445555555542 2221 1111113
Q ss_pred CCCCcEEEcCC
Q 023680 183 CRKLKILNLCG 193 (279)
Q Consensus 183 ~~~L~~L~L~~ 193 (279)
.++|+.|+|++
T Consensus 244 l~~LrrLNLS~ 254 (1255)
T KOG0444|consen 244 LRNLRRLNLSG 254 (1255)
T ss_pred hhhhheeccCc
Confidence 45666666665
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.70 E-value=0.00097 Score=54.23 Aligned_cols=125 Identities=20% Similarity=0.206 Sum_probs=78.0
Q ss_pred CceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCC
Q 023680 106 KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 185 (279)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~ 185 (279)
.|+.++++ ...++ .+..-.+-.|.++.|+++++ .+...+ . ...+++|..|+|+++.-....+. -..+.+
T Consensus 285 ~LtelDLS--~N~I~--~iDESvKL~Pkir~L~lS~N-~i~~v~--n-La~L~~L~~LDLS~N~Ls~~~Gw---h~KLGN 353 (490)
T KOG1259|consen 285 ELTELDLS--GNLIT--QIDESVKLAPKLRRLILSQN-RIRTVQ--N-LAELPQLQLLDLSGNLLAECVGW---HLKLGN 353 (490)
T ss_pred hhhhcccc--ccchh--hhhhhhhhccceeEEecccc-ceeeeh--h-hhhcccceEeecccchhHhhhhh---HhhhcC
Confidence 46777777 22222 22233344789999999985 443222 2 23358999999998532222222 245678
Q ss_pred CcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHH-HHHHHHhcCCCCCEEeccCCC
Q 023680 186 LKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDV-GVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 186 L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~ 248 (279)
+++|.|++.. + +.+..+.+ +-+|..||++++. |..- .+.. +.++|-|++|.+.+++
T Consensus 354 IKtL~La~N~--i--E~LSGL~K-LYSLvnLDl~~N~-Ie~ldeV~~-IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 354 IKTLKLAQNK--I--ETLSGLRK-LYSLVNLDLSSNQ-IEELDEVNH-IGNLPCLETLRLTGNP 410 (490)
T ss_pred Eeeeehhhhh--H--hhhhhhHh-hhhheeccccccc-hhhHHHhcc-cccccHHHHHhhcCCC
Confidence 9999998843 2 33444433 6679999999854 5442 2333 3678999999999886
No 40
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.58 E-value=0.00031 Score=64.93 Aligned_cols=125 Identities=22% Similarity=0.230 Sum_probs=74.6
Q ss_pred CCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 023680 134 LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQL 213 (279)
Q Consensus 134 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L 213 (279)
|+.|.+.+ +.++|..+..+ ...++|+.|+|+++ .+..-....+. +++.|++|+|+|.. ++.-. ..++ .++.|
T Consensus 361 Lq~Lylan-N~Ltd~c~p~l-~~~~hLKVLhLsyN-rL~~fpas~~~-kle~LeeL~LSGNk--L~~Lp-~tva-~~~~L 432 (1081)
T KOG0618|consen 361 LQELYLAN-NHLTDSCFPVL-VNFKHLKVLHLSYN-RLNSFPASKLR-KLEELEELNLSGNK--LTTLP-DTVA-NLGRL 432 (1081)
T ss_pred HHHHHHhc-Ccccccchhhh-ccccceeeeeeccc-ccccCCHHHHh-chHHhHHHhcccch--hhhhh-HHHH-hhhhh
Confidence 44445545 45666666555 34688899999885 33322222222 67788888888844 43332 3333 47778
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccc
Q 023680 214 QSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIG 276 (279)
Q Consensus 214 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~ 276 (279)
++|-..++. +.. +..+ ...++|+.+|++.|. ++...+....-. |+|+.++..|
T Consensus 433 ~tL~ahsN~-l~~--fPe~-~~l~qL~~lDlS~N~-L~~~~l~~~~p~-----p~LkyLdlSG 485 (1081)
T KOG0618|consen 433 HTLRAHSNQ-LLS--FPEL-AQLPQLKVLDLSCNN-LSEVTLPEALPS-----PNLKYLDLSG 485 (1081)
T ss_pred HHHhhcCCc-eee--chhh-hhcCcceEEecccch-hhhhhhhhhCCC-----cccceeeccC
Confidence 888776533 222 1233 335899999999865 777666544222 7777777655
No 41
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.56 E-value=0.00092 Score=59.10 Aligned_cols=135 Identities=21% Similarity=0.293 Sum_probs=89.1
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHh-------cCCCCCEEEecCCCCCCHHHHHHHHHc---CCC-CcEEEcCCCCCCCC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAH-------GCPNLTRLNISGCTSFSDHALAYLCGF---CRK-LKILNLCGCVKAAT 199 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~-------~~~~L~~L~L~~~~~~~~~~~~~l~~~---~~~-L~~L~L~~~~~~~~ 199 (279)
+..++.++++.+ .+...+...+.+ ...++++|++.+| .++......+... .+. ++.|++..+. +.
T Consensus 171 ~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~--l~ 246 (478)
T KOG4308|consen 171 NEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK--LG 246 (478)
T ss_pred ccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC--cc
Confidence 556666666663 333333333222 2346888888887 5665555554433 344 5667777643 77
Q ss_pred HHHHHHHHhcC----CCCCeEeccCCCCCCHHHH---HHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccc
Q 023680 200 DYALQAIGRNC----NQLQSLNLGWCEDVGDVGV---MNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKR 271 (279)
Q Consensus 200 ~~~~~~l~~~~----~~L~~L~l~~~~~i~~~~l---~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~ 271 (279)
|.++..+.+.+ +.++++++..|. +++.+. ......|++++.+.++.+. +++.+...+++...++++++..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~~ 323 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEALERKTPLLHL 323 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHHhhhcccchhh
Confidence 77777765543 455889998865 666554 4444568899999999976 8899999999988888886643
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.53 E-value=0.00011 Score=45.50 Aligned_cols=61 Identities=20% Similarity=0.160 Sum_probs=44.8
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
|+|++|+++++. ++.-. ...+.++++|++|++++|. ++.-. ......+++++.++..+|.|
T Consensus 1 p~L~~L~l~~n~-l~~i~-~~~f~~l~~L~~L~l~~N~-l~~i~-----~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNK-LTEIP-PDSFSNLPNLETLDLSNNN-LTSIP-----PDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSST-ESEEC-TTTTTTGTTESEEEETSSS-ESEEE-----TTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCC-CCccC-HHHHcCCCCCCEeEccCCc-cCccC-----HHHHcCCCCCCEEeCcCCcC
Confidence 689999999974 54422 1234677999999999876 65332 23459999999999999864
No 43
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.48 E-value=0.00016 Score=64.38 Aligned_cols=57 Identities=25% Similarity=0.363 Sum_probs=29.3
Q ss_pred cCCCceEEEeeCCCCCCC--HHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCC
Q 023680 103 KLTKLQTLVLRQDKPQLE--DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC 168 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~--~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 168 (279)
...||..++++ +..++ +..+ -..++|+.|+|++. .++.-.+ -...|.+|++|+++.+
T Consensus 220 ~l~NL~dvDlS--~N~Lp~vPecl----y~l~~LrrLNLS~N-~iteL~~--~~~~W~~lEtLNlSrN 278 (1255)
T KOG0444|consen 220 DLHNLRDVDLS--ENNLPIVPECL----YKLRNLRRLNLSGN-KITELNM--TEGEWENLETLNLSRN 278 (1255)
T ss_pred hhhhhhhcccc--ccCCCcchHHH----hhhhhhheeccCcC-ceeeeec--cHHHHhhhhhhccccc
Confidence 45677777777 33322 2221 12567777777763 4442221 1223456666666653
No 44
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.45 E-value=0.00042 Score=54.96 Aligned_cols=87 Identities=29% Similarity=0.414 Sum_probs=55.9
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCH-HHHHHHHhcCCCCCeEeccCCC--CCCHHHHHHHH
Q 023680 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD-YALQAIGRNCNQLQSLNLGWCE--DVGDVGVMNLA 233 (279)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~--~i~~~~l~~l~ 233 (279)
+|+|++|.++.++.-...++..++..+|+|++|++++.. +.+ ..+..+ +.+++|..|++.+|. +.++.- ..++
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk--i~~lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyr-e~vf 139 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK--IKDLSTLRPL-KELENLKSLDLFNCSVTNLDDYR-EKVF 139 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCc--cccccccchh-hhhcchhhhhcccCCccccccHH-HHHH
Confidence 478888888765334456677777788899999888854 443 223333 347788888888775 233322 3334
Q ss_pred hcCCCCCEEeccCC
Q 023680 234 YGCPDLRSLDLCGC 247 (279)
Q Consensus 234 ~~~~~L~~L~l~~c 247 (279)
.-+|+|++||-..+
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 45688888876654
No 45
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.38 E-value=0.0025 Score=31.08 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=13.0
Q ss_pred CCCCCEEeccCCCCCChHHHHHH
Q 023680 236 CPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 236 ~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
|++|++|++++|. |+++++..|
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHh
Confidence 4667777777766 777776665
No 46
>PLN03150 hypothetical protein; Provisional
Probab=96.32 E-value=0.0071 Score=55.78 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=27.6
Q ss_pred cCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
.+++|+.|+|+++. +....-..+ ..+++|+.|+++++. ++.. +...+.++++|++|++++|.
T Consensus 440 ~L~~L~~L~Ls~N~--l~g~iP~~~-~~l~~L~~LdLs~N~-lsg~-iP~~l~~L~~L~~L~Ls~N~ 501 (623)
T PLN03150 440 KLRHLQSINLSGNS--IRGNIPPSL-GSITSLEVLDLSYNS-FNGS-IPESLGQLTSLRILNLNGNS 501 (623)
T ss_pred CCCCCCEEECCCCc--ccCcCChHH-hCCCCCCEEECCCCC-CCCC-CchHHhcCCCCCEEECcCCc
Confidence 45556666665533 222111122 235556666665533 2221 11122445556666665553
No 47
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.0031 Score=50.84 Aligned_cols=118 Identities=24% Similarity=0.204 Sum_probs=70.0
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
..+.+.|++.+| .++|..+ -+.+|.|+.|.|+-+ .++. +..+. .|.+|++|-|.... |.+-.-....+++
T Consensus 18 l~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvN-kIss--L~pl~-rCtrLkElYLRkN~--I~sldEL~YLknl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVN-KISS--LAPLQ-RCTRLKELYLRKNC--IESLDELEYLKNL 87 (388)
T ss_pred HHHhhhhcccCC-CccHHHH---HHhcccceeEEeecc-cccc--chhHH-HHHHHHHHHHHhcc--cccHHHHHHHhcC
Confidence 346677777775 6666554 345688888888753 3332 33333 67888888887633 4444333334568
Q ss_pred CCCCeEeccCCC---CCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhc
Q 023680 211 NQLQSLNLGWCE---DVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIR 261 (279)
Q Consensus 211 ~~L~~L~l~~~~---~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~ 261 (279)
|+|+.|=|..++ .-+...-..++..+|+|++||= ..+|.+.+..-+.-
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn---v~VteeEle~ALr~ 138 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN---VPVTEEELEEALRD 138 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhccC---ccccHHHHHHHHhc
Confidence 888888775433 2222333444566788888763 44777666665443
No 48
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.13 E-value=0.0028 Score=50.39 Aligned_cols=86 Identities=30% Similarity=0.362 Sum_probs=53.4
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCH-HHHHHHHHcCCCCcEEEcCCCCC-CCCHHHHHHHHh
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVK-AATDYALQAIGR 208 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~-~~~~~~~~~l~~ 208 (279)
+|+|+.|.++.+..-...++..+++.+|+|++|+++++ .+.+ ..+..+. ..++|..|++..|.. .++++ =..++.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~-~l~nL~~Ldl~n~~~~~l~dy-re~vf~ 140 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLK-ELENLKSLDLFNCSVTNLDDY-REKVFL 140 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhh-hhcchhhhhcccCCccccccH-HHHHHH
Confidence 67788888877433445567777787888888888874 5553 3333333 557788888887762 12222 123445
Q ss_pred cCCCCCeEecc
Q 023680 209 NCNQLQSLNLG 219 (279)
Q Consensus 209 ~~~~L~~L~l~ 219 (279)
.+|+|+.|+-.
T Consensus 141 ll~~L~~LD~~ 151 (260)
T KOG2739|consen 141 LLPSLKYLDGC 151 (260)
T ss_pred Hhhhhcccccc
Confidence 56777777653
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.01 E-value=0.0015 Score=59.28 Aligned_cols=81 Identities=28% Similarity=0.199 Sum_probs=48.4
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhc
Q 023680 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG 235 (279)
Q Consensus 156 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~ 235 (279)
-.|.|++|+|+++ .+++- ..+ +.|++|++|||++.. +.. +..+....-.|..|+++++.--+-.++..
T Consensus 185 ll~ale~LnLshN-k~~~v--~~L-r~l~~LkhLDlsyN~--L~~--vp~l~~~gc~L~~L~lrnN~l~tL~gie~---- 252 (1096)
T KOG1859|consen 185 LLPALESLNLSHN-KFTKV--DNL-RRLPKLKHLDLSYNC--LRH--VPQLSMVGCKLQLLNLRNNALTTLRGIEN---- 252 (1096)
T ss_pred HHHHhhhhccchh-hhhhh--HHH-Hhcccccccccccch--hcc--ccccchhhhhheeeeecccHHHhhhhHHh----
Confidence 3477888888874 44442 333 478889999998833 221 12222112238888888755223334443
Q ss_pred CCCCCEEeccCCC
Q 023680 236 CPDLRSLDLCGCV 248 (279)
Q Consensus 236 ~~~L~~L~l~~c~ 248 (279)
+++|+.||+++|-
T Consensus 253 LksL~~LDlsyNl 265 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNL 265 (1096)
T ss_pred hhhhhccchhHhh
Confidence 4788888888865
No 50
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.00 E-value=0.0062 Score=51.69 Aligned_cols=38 Identities=24% Similarity=0.618 Sum_probs=34.9
Q ss_pred CCCCCCCHHHHHHHcccC-ChhHHHHHHhcChhHHHhhc
Q 023680 41 TEWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAIC 78 (279)
Q Consensus 41 ~~~~~Lp~~il~~I~~~L-~~~~l~~~~~vc~~w~~~~~ 78 (279)
..|.+||.|++..|..+| ...|+.+...||+.||.++.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~ 40 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS 40 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence 469999999999999999 77899999999999998764
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.95 E-value=0.0011 Score=60.01 Aligned_cols=107 Identities=24% Similarity=0.262 Sum_probs=67.9
Q ss_pred hhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHh
Q 023680 129 NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR 208 (279)
Q Consensus 129 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 208 (279)
+-.+.|++|+|+++ .+++-. ....|++|++|+|+++ .+. .+..+....-.|..|+|++.. -..+..+.
T Consensus 184 qll~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN-~L~--~vp~l~~~gc~L~~L~lrnN~----l~tL~gie- 251 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYN-CLR--HVPQLSMVGCKLQLLNLRNNA----LTTLRGIE- 251 (1096)
T ss_pred HHHHHhhhhccchh-hhhhhH---HHHhcccccccccccc-hhc--cccccchhhhhheeeeecccH----HHhhhhHH-
Confidence 33678999999984 555443 3566899999999985 322 233333322348999998733 23344454
Q ss_pred cCCCCCeEeccCCCCCCH-HHHHHHHhcCCCCCEEeccCCCC
Q 023680 209 NCNQLQSLNLGWCEDVGD-VGVMNLAYGCPDLRSLDLCGCVC 249 (279)
Q Consensus 209 ~~~~L~~L~l~~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~~ 249 (279)
++.+|+.||++++- +.+ ..+..+ ..+..|+.|.+.||+.
T Consensus 252 ~LksL~~LDlsyNl-l~~hseL~pL-wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNL-LSEHSELEPL-WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred hhhhhhccchhHhh-hhcchhhhHH-HHHHHHHHHhhcCCcc
Confidence 47889999999854 333 223222 2335788889988873
No 52
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.85 E-value=0.006 Score=54.07 Aligned_cols=185 Identities=25% Similarity=0.262 Sum_probs=115.6
Q ss_pred CcEEEccCCCCc--chHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCC----CCCeEecCCCCCCCHHHHHHHH
Q 023680 81 LTHLSLSWCKNN--MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCH----DLQDLDLSKSFKLSDRSLYALA 154 (279)
Q Consensus 81 l~~l~l~~~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~----~L~~L~L~~~~~~~~~~l~~l~ 154 (279)
+.++.+.++... ....+.......+.|+.|+++ ...+++.....+....+ .++.|.+..| .+++++...++
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~--~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~ 165 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLS--GNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLA 165 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcc--cCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHH
Confidence 444555554322 223334445567888889998 55566777777665543 4566777775 55655544443
Q ss_pred ---hcCCCCCEEEecCCCCCCHHHHHHHHHc-------CCCCcEEEcCCCCCCCCHHHHHHHH---hcCCC-CCeEeccC
Q 023680 155 ---HGCPNLTRLNISGCTSFSDHALAYLCGF-------CRKLKILNLCGCVKAATDYALQAIG---RNCNQ-LQSLNLGW 220 (279)
Q Consensus 155 ---~~~~~L~~L~L~~~~~~~~~~~~~l~~~-------~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~-L~~L~l~~ 220 (279)
.....++.++++.+ .+...+...+.+. ..++++|++++|. +++.....+. ...+. ++.|++.+
T Consensus 166 ~~L~~~~~l~~l~l~~n-~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~--~t~~~c~~l~~~l~~~~~~~~el~l~~ 242 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLN-GLIELGLLVLSQALESAASPLSSLETLKLSRCG--VTSSSCALLDEVLASGESLLRELDLAS 242 (478)
T ss_pred HHHhcccchhHHHHHhc-ccchhhhHHHhhhhhhhhcccccHHHHhhhhcC--cChHHHHHHHHHHhccchhhHHHHHHh
Confidence 33677888888875 5545555444432 3468999999987 6666655443 33444 66688877
Q ss_pred CCCCCHHHHHHHHhcC----CCCCEEeccCCCCCChHHHHHHhhccccCccccccccc
Q 023680 221 CEDVGDVGVMNLAYGC----PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECS 274 (279)
Q Consensus 221 ~~~i~~~~l~~l~~~~----~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~ 274 (279)
+ .+.+.++..+.... +.++++++++|. +++.+...+.+ -...|+++..+..
T Consensus 243 n-~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~-~l~~~~~l~~l~l 297 (478)
T KOG4308|consen 243 N-KLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAE-VLVSCRQLEELSL 297 (478)
T ss_pred c-CcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHH-HHhhhHHHHHhhc
Confidence 4 47777766665443 466899999987 88888877643 3455666655443
No 53
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.61 E-value=0.0025 Score=51.38 Aligned_cols=105 Identities=22% Similarity=0.305 Sum_probs=71.9
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
.+.+.|++++| +++|-.+ .+.+|.|+.|.|+-.. |+ .+..+ ..|++|++|.|+.+. |.+..-...++++|
T Consensus 19 ~~vkKLNcwg~-~L~DIsi---c~kMp~lEVLsLSvNk--Is--sL~pl-~rCtrLkElYLRkN~-I~sldEL~YLknlp 88 (388)
T KOG2123|consen 19 ENVKKLNCWGC-GLDDISI---CEKMPLLEVLSLSVNK--IS--SLAPL-QRCTRLKELYLRKNC-IESLDELEYLKNLP 88 (388)
T ss_pred HHhhhhcccCC-CccHHHH---HHhcccceeEEeeccc--cc--cchhH-HHHHHHHHHHHHhcc-cccHHHHHHHhcCc
Confidence 36788999998 7777544 4677999999998633 33 33444 469999999998744 55544444558899
Q ss_pred CCCEEeccCCCCCChHHHHHHhhccccCcccccccc
Q 023680 238 DLRSLDLCGCVCITGISSADVIIRPSRNCCVVKREC 273 (279)
Q Consensus 238 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~ 273 (279)
+|+.|.|..|+-.. .+-..--..-.+--|.|++++
T Consensus 89 sLr~LWL~ENPCc~-~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 89 SLRTLWLDENPCCG-EAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhhHhhccCCccc-ccchhHHHHHHHHcccchhcc
Confidence 99999999877443 333333333456677777765
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.59 E-value=0.014 Score=33.28 Aligned_cols=34 Identities=32% Similarity=0.322 Sum_probs=15.8
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC 221 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 221 (279)
++|++|+++++. +++ +......+++|+.|+++++
T Consensus 1 ~~L~~L~l~~N~--i~~--l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 1 KNLEELDLSNNQ--ITD--LPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp TT-SEEEETSSS---SS--HGGHGTTCTTSSEEEETSS
T ss_pred CcceEEEccCCC--Ccc--cCchHhCCCCCCEEEecCC
Confidence 345666665543 332 2221234666666666654
No 55
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.55 E-value=0.013 Score=54.99 Aligned_cols=16 Identities=25% Similarity=0.245 Sum_probs=10.2
Q ss_pred ChHHHHHHHHHHHHhc
Q 023680 9 SSEDLNLCFEKMMMAG 24 (279)
Q Consensus 9 ~~e~l~~if~~l~~~~ 24 (279)
.+|.+...|++|..-.
T Consensus 64 ~~~~~~~~~~~l~~~~ 79 (788)
T PRK15387 64 TREDVINRFELLRTLA 79 (788)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 4566777777775443
No 56
>PLN03150 hypothetical protein; Provisional
Probab=95.54 E-value=0.027 Score=52.00 Aligned_cols=110 Identities=17% Similarity=0.136 Sum_probs=62.5
Q ss_pred CCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCC
Q 023680 134 LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQL 213 (279)
Q Consensus 134 L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L 213 (279)
++.|+|+++ .+.... ..-...+++|+.|+|+++ .+.. .+......+++|+.|+|+++. ++...-..+. .+++|
T Consensus 420 v~~L~L~~n-~L~g~i-p~~i~~L~~L~~L~Ls~N-~l~g-~iP~~~~~l~~L~~LdLs~N~--lsg~iP~~l~-~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQ-GLRGFI-PNDISKLRHLQSINLSGN-SIRG-NIPPSLGSITSLEVLDLSYNS--FNGSIPESLG-QLTSL 492 (623)
T ss_pred EEEEECCCC-CccccC-CHHHhCCCCCCEEECCCC-cccC-cCChHHhCCCCCCEEECCCCC--CCCCCchHHh-cCCCC
Confidence 677788774 343221 222345688888888875 3432 233333467888888888854 4433333343 57888
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 023680 214 QSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT 251 (279)
Q Consensus 214 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 251 (279)
+.|+++++. ++...-..+.....++..+++.+|..+.
T Consensus 493 ~~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 493 RILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred CEEECcCCc-ccccCChHHhhccccCceEEecCCcccc
Confidence 888888754 3322222222223456677777765443
No 57
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.24 E-value=0.03 Score=53.48 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=11.5
Q ss_pred cCCCCCEEeccCCCC
Q 023680 235 GCPDLRSLDLCGCVC 249 (279)
Q Consensus 235 ~~~~L~~L~l~~c~~ 249 (279)
..++|+.|.+.+|..
T Consensus 715 ~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 715 SLGNLEELSILDCGI 729 (889)
T ss_pred cccCcceEEEEcCCC
Confidence 346888888888874
No 58
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.11 E-value=0.024 Score=27.50 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=6.3
Q ss_pred CCCeEeccCCCCCCHHHHH
Q 023680 212 QLQSLNLGWCEDVGDVGVM 230 (279)
Q Consensus 212 ~L~~L~l~~~~~i~~~~l~ 230 (279)
+|++|+|++|. |++.++.
T Consensus 3 ~L~~L~l~~n~-i~~~g~~ 20 (24)
T PF13516_consen 3 NLETLDLSNNQ-ITDEGAS 20 (24)
T ss_dssp T-SEEE-TSSB-EHHHHHH
T ss_pred CCCEEEccCCc-CCHHHHH
Confidence 34444444432 4444433
No 59
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=94.61 E-value=0.0077 Score=34.87 Aligned_cols=30 Identities=13% Similarity=-0.119 Sum_probs=24.6
Q ss_pred cCCChHHHHHHHHHHHHhcccccCCCCCcc
Q 023680 6 TNLSSEDLNLCFEKMMMAGAGADRAGGVKM 35 (279)
Q Consensus 6 ~~l~~e~l~~if~~l~~~~~~~~~~~~~~~ 35 (279)
..||+|++.+||++++..+....+.+|+..
T Consensus 2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w 31 (47)
T PF12937_consen 2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRW 31 (47)
T ss_dssp CCS-HHHHHHHHTTS-HHHHHHHTTSSHHH
T ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 379999999999999999999998888753
No 60
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.36 E-value=0.028 Score=46.03 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=32.1
Q ss_pred CCCCCCCCHHHHHHHccc-----CChhHHHHHHhcChhHHHhh
Q 023680 40 ITEWKDIPMELLLRILSL-----VDEPTVIVASGVCSGWRDAI 77 (279)
Q Consensus 40 ~~~~~~Lp~~il~~I~~~-----L~~~~l~~~~~vc~~w~~~~ 77 (279)
...+..||+|++..||.. ++.+.+.+++.|||.|+..+
T Consensus 104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 345678999999999995 47789999999999998765
No 61
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.21 E-value=0.054 Score=51.83 Aligned_cols=134 Identities=24% Similarity=0.177 Sum_probs=76.1
Q ss_pred cCCCceEEEeeCCCCC-CCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 023680 103 KLTKLQTLVLRQDKPQ-LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 181 (279)
.+++|++|-+. .... +.. .-......+|.|+.|+|+++... ..++.....+-+|++|++++. ++. .++.-.+
T Consensus 543 ~~~~L~tLll~-~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l--~~LP~~I~~Li~LryL~L~~t-~I~--~LP~~l~ 615 (889)
T KOG4658|consen 543 ENPKLRTLLLQ-RNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSL--SKLPSSIGELVHLRYLDLSDT-GIS--HLPSGLG 615 (889)
T ss_pred CCCccceEEEe-ecchhhhh-cCHHHHhhCcceEEEECCCCCcc--CcCChHHhhhhhhhcccccCC-Ccc--ccchHHH
Confidence 45678888777 3321 111 11122455888999999874322 223333333457888888874 544 3444455
Q ss_pred cCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCC-CCCHHHHHHHHhcCCCCCEEeccCC
Q 023680 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE-DVGDVGVMNLAYGCPDLRSLDLCGC 247 (279)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~i~~~~l~~l~~~~~~L~~L~l~~c 247 (279)
++..|.+|++.++.. . ..+..+...+++|++|.+.... ..+...+..+ .+.++|+.+.+..+
T Consensus 616 ~Lk~L~~Lnl~~~~~-l--~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~ 678 (889)
T KOG4658|consen 616 NLKKLIYLNLEVTGR-L--ESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITIS 678 (889)
T ss_pred HHHhhheeccccccc-c--ccccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecc
Confidence 667888888887653 1 1123344457889999886643 3344444444 45566666665443
No 62
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=94.08 E-value=0.06 Score=50.64 Aligned_cols=91 Identities=23% Similarity=0.218 Sum_probs=49.1
Q ss_pred CceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCC
Q 023680 106 KLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 185 (279)
Q Consensus 106 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~ 185 (279)
+|+.|.+. ...++. +....++|+.|+++++ .++. +. ...++|+.|++.++ .++ .+.. ..++
T Consensus 223 ~L~~L~L~--~N~Lt~-----LP~lp~~Lk~LdLs~N-~Lts--LP---~lp~sL~~L~Ls~N-~L~--~Lp~---lp~~ 283 (788)
T PRK15387 223 HITTLVIP--DNNLTS-----LPALPPELRTLEVSGN-QLTS--LP---VLPPGLLELSIFSN-PLT--HLPA---LPSG 283 (788)
T ss_pred CCCEEEcc--CCcCCC-----CCCCCCCCcEEEecCC-ccCc--cc---CcccccceeeccCC-chh--hhhh---chhh
Confidence 56666666 223331 2223567777777763 4442 11 12357777777664 332 2222 2356
Q ss_pred CcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCC
Q 023680 186 LKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE 222 (279)
Q Consensus 186 L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 222 (279)
|+.|+++++. ++. +....++|+.|+++++.
T Consensus 284 L~~L~Ls~N~--Lt~-----LP~~p~~L~~LdLS~N~ 313 (788)
T PRK15387 284 LCKLWIFGNQ--LTS-----LPVLPPGLQELSVSDNQ 313 (788)
T ss_pred cCEEECcCCc--ccc-----ccccccccceeECCCCc
Confidence 7778887744 332 11234789999998853
No 63
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=93.94 E-value=0.097 Score=26.47 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=15.1
Q ss_pred CCCCEEeccCCCCCChHHHHHHh
Q 023680 237 PDLRSLDLCGCVCITGISSADVI 259 (279)
Q Consensus 237 ~~L~~L~l~~c~~i~~~~~~~l~ 259 (279)
++|++|+|++|. +.++++..+.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALA 23 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHH
Confidence 567777777765 6777776663
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.61 E-value=0.051 Score=46.95 Aligned_cols=135 Identities=18% Similarity=0.192 Sum_probs=66.3
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.+.+|++++|.-. .+-.--++|++|.+. .|..++..- ..+ .++|+.|++++|..+. .+ -++
T Consensus 53 ~l~~L~Is~c~L~------sLP~LP~sLtsL~Ls-nc~nLtsLP-~~L---P~nLe~L~Ls~Cs~L~-----sL---P~s 113 (426)
T PRK15386 53 ASGRLYIKDCDIE------SLPVLPNELTEITIE-NCNNLTTLP-GSI---PEGLEKLTVCHCPEIS-----GL---PES 113 (426)
T ss_pred CCCEEEeCCCCCc------ccCCCCCCCcEEEcc-CCCCcccCC-chh---hhhhhheEccCccccc-----cc---ccc
Confidence 3677777766211 111122357777777 555542110 011 3467777777764332 11 246
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
|+.|.+... .... + ..--++|+.|.+.+... ........ .-.++|+.|++++|..+... ..+ -.+|
T Consensus 114 Le~L~L~~n-~~~~--L---~~LPssLk~L~I~~~n~-~~~~~lp~--~LPsSLk~L~Is~c~~i~LP--~~L---P~SL 179 (426)
T PRK15386 114 VRSLEIKGS-ATDS--I---KNVPNGLTSLSINSYNP-ENQARIDN--LISPSLKTLSLTGCSNIILP--EKL---PESL 179 (426)
T ss_pred cceEEeCCC-CCcc--c---ccCcchHhheecccccc-cccccccc--ccCCcccEEEecCCCcccCc--ccc---cccC
Confidence 777777542 2111 1 11124677777754221 11111111 12367999999887743210 112 1588
Q ss_pred CEEeccCC
Q 023680 240 RSLDLCGC 247 (279)
Q Consensus 240 ~~L~l~~c 247 (279)
++|+++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88888765
No 65
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=93.30 E-value=0.046 Score=45.31 Aligned_cols=40 Identities=20% Similarity=0.346 Sum_probs=35.7
Q ss_pred CCCCCCCC----HHHHHHHcccCChhHHHHHHhcChhHHHhhcC
Q 023680 40 ITEWKDIP----MELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (279)
Q Consensus 40 ~~~~~~Lp----~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~~ 79 (279)
.+.+..|| +++..+||+||+..++..+-.||++|+++...
T Consensus 72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhcc
Confidence 36688899 99999999999999999999999999987633
No 66
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.00 E-value=0.13 Score=44.05 Aligned_cols=112 Identities=21% Similarity=0.126 Sum_probs=56.8
Q ss_pred HHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHH
Q 023680 126 AIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQA 205 (279)
Q Consensus 126 ~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~ 205 (279)
......++|..|++++. .+.+- ..=+.....|+.|+++.+ .+.. ++...-....++.+-.+.. .+.......
T Consensus 429 ~~l~~l~kLt~L~L~NN-~Ln~L--P~e~~~lv~Lq~LnlS~N-rFr~--lP~~~y~lq~lEtllas~n--qi~~vd~~~ 500 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNN-LLNDL--PEEMGSLVRLQTLNLSFN-RFRM--LPECLYELQTLETLLASNN--QIGSVDPSG 500 (565)
T ss_pred HHHHhhhcceeeecccc-hhhhc--chhhhhhhhhheeccccc-cccc--chHHHhhHHHHHHHHhccc--cccccChHH
Confidence 34445777888888773 22211 111122345778888764 2211 1111100112233322221 122222222
Q ss_pred HHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCC
Q 023680 206 IGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVC 249 (279)
Q Consensus 206 l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~ 249 (279)
+ .++.+|..||+.++. -..+..+.++|.+|++|++.|++.
T Consensus 501 l-~nm~nL~tLDL~nNd---lq~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 501 L-KNMRNLTTLDLQNND---LQQIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred h-hhhhhcceeccCCCc---hhhCChhhccccceeEEEecCCcc
Confidence 2 246778888888743 233566678889999999998873
No 67
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=92.93 E-value=0.056 Score=41.67 Aligned_cols=12 Identities=50% Similarity=0.808 Sum_probs=5.9
Q ss_pred cCCCCcEEEcCC
Q 023680 182 FCRKLKILNLCG 193 (279)
Q Consensus 182 ~~~~L~~L~L~~ 193 (279)
.||+|++|.+-+
T Consensus 111 ~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 111 SCPKLEYLTLLG 122 (233)
T ss_pred cCCccceeeecC
Confidence 445555555444
No 68
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=92.76 E-value=0.001 Score=49.66 Aligned_cols=36 Identities=22% Similarity=0.077 Sum_probs=20.4
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
+++|+.|.++.+.-++- ..-+....+|++|++.|+.
T Consensus 149 lt~lqil~lrdndll~l---pkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 149 LTNLQILSLRDNDLLSL---PKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hcceeEEeeccCchhhC---cHHHHHHHHHHHHhcccce
Confidence 56677777776443221 1112334577888887764
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=92.64 E-value=0.24 Score=42.92 Aligned_cols=146 Identities=21% Similarity=0.249 Sum_probs=80.6
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
.++++|.+.+|..... .... -.++|++|.+. .|..+. .-.++|+.|++... .... +..--+
T Consensus 72 ~sLtsL~Lsnc~nLts-LP~~---LP~nLe~L~Ls-~Cs~L~--------sLP~sLe~L~L~~n-~~~~-----L~~LPs 132 (426)
T PRK15386 72 NELTEITIENCNNLTT-LPGS---IPEGLEKLTVC-HCPEIS--------GLPESVRSLEIKGS-ATDS-----IKNVPN 132 (426)
T ss_pred CCCcEEEccCCCCccc-CCch---hhhhhhheEcc-Cccccc--------ccccccceEEeCCC-CCcc-----cccCcc
Confidence 3588999988755321 1111 13589999999 675553 12457899998652 2221 222234
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCC----CCHHHHHHHHh
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCED----VGDVGVMNLAY 234 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~----i~~~~l~~l~~ 234 (279)
+|+.|.+.+........+... --++|++|++++|....... .-..+|+.|.++.+.. +.. ..+.
T Consensus 133 sLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~------~LP~SLk~L~ls~n~~~sLeI~~---~sLP- 200 (426)
T PRK15386 133 GLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPE------KLPESLQSITLHIEQKTTWNISF---EGFP- 200 (426)
T ss_pred hHhheeccccccccccccccc--cCCcccEEEecCCCcccCcc------cccccCcEEEecccccccccCcc---cccc-
Confidence 788888854321111111100 12589999999887421111 1235799999876421 221 1121
Q ss_pred cCCCCCEEeccCCCCCChHHHHHH
Q 023680 235 GCPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 235 ~~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
+++ .|++.+|..++.+.+..-
T Consensus 201 --~nl-~L~f~n~lkL~~~~f~d~ 221 (426)
T PRK15386 201 --DGL-DIDLQNSVLLSPDVFKDK 221 (426)
T ss_pred --ccc-EechhhhcccCHHHhhcc
Confidence 455 788888776666655443
No 70
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.80 E-value=0.31 Score=24.57 Aligned_cols=22 Identities=36% Similarity=0.512 Sum_probs=11.8
Q ss_pred CCCCeEeccCCCCCCHHHHHHHH
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLA 233 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~ 233 (279)
++|++|+|+++. +++.+...+.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALA 23 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHH
Confidence 345566665533 5555555554
No 71
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.98 E-value=0.45 Score=42.33 Aligned_cols=91 Identities=23% Similarity=0.186 Sum_probs=47.4
Q ss_pred HHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCC--CCCHHHHHHHHHcCCCCcEEEcCCCCCC----C
Q 023680 125 EAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCT--SFSDHALAYLCGFCRKLKILNLCGCVKA----A 198 (279)
Q Consensus 125 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~~~----~ 198 (279)
..+....|.+.+++|+++.-..-+.+..+.+..|+|+.|+|+++. -.+...+.++ ....|++|-+.|.+-. .
T Consensus 211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~ 288 (585)
T KOG3763|consen 211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSD 288 (585)
T ss_pred HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhh
Confidence 344444667777777765555556666677777777777776641 1111122222 2355666666664310 0
Q ss_pred CHHHHHHHHhcCCCCCeEe
Q 023680 199 TDYALQAIGRNCNQLQSLN 217 (279)
Q Consensus 199 ~~~~~~~l~~~~~~L~~L~ 217 (279)
..+.+.++.+.+|+|..||
T Consensus 289 ~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 289 RSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hHHHHHHHHHhcchheeec
Confidence 1112334555666666654
No 72
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.51 E-value=0.61 Score=41.52 Aligned_cols=92 Identities=23% Similarity=0.212 Sum_probs=63.2
Q ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCC-HHHHHHHHhcCCCCCeEeccCCCCCC---
Q 023680 150 LYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAAT-DYALQAIGRNCNQLQSLNLGWCEDVG--- 225 (279)
Q Consensus 150 l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~~~~~l~~~~~~L~~L~l~~~~~i~--- 225 (279)
+..+....|.+..++|+++.-..-.++..+.+..|+|..|+|++..+.+. +..+..+ ....|++|-+.|++-.+
T Consensus 210 L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 210 LKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred HHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchh
Confidence 44555677899999998875556677888999999999999998522222 2222233 35669999998865322
Q ss_pred --HHHHHHHHhcCCCCCEEe
Q 023680 226 --DVGVMNLAYGCPDLRSLD 243 (279)
Q Consensus 226 --~~~l~~l~~~~~~L~~L~ 243 (279)
.+.+.++....|+|..||
T Consensus 288 ~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 288 DRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred hhHHHHHHHHHhcchheeec
Confidence 234566666779888775
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=90.26 E-value=0.13 Score=37.26 Aligned_cols=13 Identities=38% Similarity=0.457 Sum_probs=6.5
Q ss_pred CCCCCeEeccCCC
Q 023680 210 CNQLQSLNLGWCE 222 (279)
Q Consensus 210 ~~~L~~L~l~~~~ 222 (279)
.|.|+.|++++++
T Consensus 99 m~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 99 MPALRSLNLRFNP 111 (177)
T ss_pred hHHhhhcccccCc
Confidence 4455555555543
No 74
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=89.63 E-value=0.79 Score=43.36 Aligned_cols=88 Identities=11% Similarity=0.087 Sum_probs=50.8
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCH--HHHHHHHhc
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGD--VGVMNLAYG 235 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~--~~l~~l~~~ 235 (279)
++|+.|+++++ .++. +... -.++|+.|+|+++. ++.- ...+ .+.|+.|+++++. ++. ..+..+...
T Consensus 346 ~sL~~L~Ls~N-~L~~--LP~~--lp~~L~~LdLs~N~--Lt~L-P~~l---~~sL~~LdLs~N~-L~~LP~sl~~~~~~ 413 (754)
T PRK15370 346 PELQVLDVSKN-QITV--LPET--LPPTITTLDVSRNA--LTNL-PENL---PAALQIMQASRNN-LVRLPESLPHFRGE 413 (754)
T ss_pred CcccEEECCCC-CCCc--CChh--hcCCcCEEECCCCc--CCCC-CHhH---HHHHHHHhhccCC-cccCchhHHHHhhc
Confidence 57777777765 3331 1111 12577778777754 3311 0111 1247777777754 332 234455556
Q ss_pred CCCCCEEeccCCCCCChHHHHHH
Q 023680 236 CPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 236 ~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
++++..|++.+|+ ++...+..+
T Consensus 414 ~~~l~~L~L~~Np-ls~~tl~~L 435 (754)
T PRK15370 414 GPQPTRIIVEYNP-FSERTIQNM 435 (754)
T ss_pred CCCccEEEeeCCC-ccHHHHHHH
Confidence 6889999999987 777777655
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=89.57 E-value=0.17 Score=36.71 Aligned_cols=87 Identities=21% Similarity=0.152 Sum_probs=55.0
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
.+-.++|++|.-.....+.........|...+|++.. +. .--..+...+|.++.|++.++ .|.+...+ +...|.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~--fk-~fp~kft~kf~t~t~lNl~~n-eisdvPeE--~Aam~a 101 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG--FK-KFPKKFTIKFPTATTLNLANN-EISDVPEE--LAAMPA 101 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch--hh-hCCHHHhhccchhhhhhcchh-hhhhchHH--HhhhHH
Confidence 4666778777433233444444455677777887632 11 111245566788999999984 46665544 355699
Q ss_pred CCEEeccCCCCCC
Q 023680 239 LRSLDLCGCVCIT 251 (279)
Q Consensus 239 L~~L~l~~c~~i~ 251 (279)
|+.|++++|+..-
T Consensus 102 Lr~lNl~~N~l~~ 114 (177)
T KOG4579|consen 102 LRSLNLRFNPLNA 114 (177)
T ss_pred hhhcccccCcccc
Confidence 9999999987543
No 76
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.21 E-value=0.3 Score=37.79 Aligned_cols=108 Identities=21% Similarity=0.229 Sum_probs=66.1
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHH-HHHHHhc
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA-LQAIGRN 209 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~-~~~l~~~ 209 (279)
..+...++|++....... .+...++|..|.+.++ .++.- -..+...+|+|..|.+.+.. +..-+ +..++ .
T Consensus 41 ~d~~d~iDLtdNdl~~l~----~lp~l~rL~tLll~nN-rIt~I-~p~L~~~~p~l~~L~LtnNs--i~~l~dl~pLa-~ 111 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLD----NLPHLPRLHTLLLNNN-RITRI-DPDLDTFLPNLKTLILTNNS--IQELGDLDPLA-S 111 (233)
T ss_pred ccccceecccccchhhcc----cCCCccccceEEecCC-cceee-ccchhhhccccceEEecCcc--hhhhhhcchhc-c
Confidence 445666777663221111 2345678999999874 55431 23344456899999998844 43332 33344 5
Q ss_pred CCCCCeEeccCCCCCCHHHH--HHHHhcCCCCCEEeccCCC
Q 023680 210 CNQLQSLNLGWCEDVGDVGV--MNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l--~~l~~~~~~L~~L~l~~c~ 248 (279)
||.|+.|.+-+++ ++...- ..++...|+|+.||..+-.
T Consensus 112 ~p~L~~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 112 CPKLEYLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred CCccceeeecCCc-hhcccCceeEEEEecCcceEeehhhhh
Confidence 9999999998755 444321 2223456999999998844
No 77
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=88.24 E-value=0.19 Score=44.14 Aligned_cols=12 Identities=58% Similarity=0.454 Sum_probs=6.8
Q ss_pred hCCCCCeEecCC
Q 023680 130 SCHDLQDLDLSK 141 (279)
Q Consensus 130 ~~~~L~~L~L~~ 141 (279)
.+++|+.|++++
T Consensus 116 ~~~~L~~L~ls~ 127 (414)
T KOG0531|consen 116 SLVNLQVLDLSF 127 (414)
T ss_pred hhhcchheeccc
Confidence 355555566555
No 78
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=87.98 E-value=0.29 Score=41.83 Aligned_cols=43 Identities=16% Similarity=0.041 Sum_probs=20.0
Q ss_pred HhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 023680 207 GRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT 251 (279)
Q Consensus 207 ~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 251 (279)
+....+|+.|++.+ ++||-....++ +....|..|++-+++.-.
T Consensus 318 f~~ls~L~tL~L~~-N~it~~~~~aF-~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 318 FQGLSGLKTLSLYD-NQITTVAPGAF-QTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred hhccccceeeeecC-CeeEEEecccc-cccceeeeeehccCcccC
Confidence 34455566666655 23443332222 333455555555544333
No 79
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=87.01 E-value=1.5 Score=41.47 Aligned_cols=96 Identities=14% Similarity=0.099 Sum_probs=43.3
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCC
Q 023680 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (279)
Q Consensus 132 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (279)
++|+.|+++++ .++. +..- ..++|+.|+|++| .+.. ++.-. ..+|+.|+++++. ++. +.. ..++
T Consensus 220 ~nL~~L~Ls~N-~Lts--LP~~--l~~~L~~L~Ls~N-~L~~--LP~~l--~s~L~~L~Ls~N~--L~~--LP~--~l~~ 283 (754)
T PRK15370 220 GNIKTLYANSN-QLTS--IPAT--LPDTIQEMELSIN-RITE--LPERL--PSALQSLDLFHNK--ISC--LPE--NLPE 283 (754)
T ss_pred cCCCEEECCCC-cccc--CChh--hhccccEEECcCC-ccCc--CChhH--hCCCCEEECcCCc--cCc--ccc--ccCC
Confidence 46667766653 3331 1110 1135666777664 3321 11111 1356777776533 331 111 1124
Q ss_pred CCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 212 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
+|+.|++++|. ++... ..+ .++|++|++++|.
T Consensus 284 sL~~L~Ls~N~-Lt~LP-~~l---p~sL~~L~Ls~N~ 315 (754)
T PRK15370 284 ELRYLSVYDNS-IRTLP-AHL---PSGITHLNVQSNS 315 (754)
T ss_pred CCcEEECCCCc-cccCc-ccc---hhhHHHHHhcCCc
Confidence 67777777653 33210 001 1356666776654
No 80
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=86.67 E-value=0.2 Score=28.87 Aligned_cols=28 Identities=11% Similarity=-0.099 Sum_probs=22.2
Q ss_pred CCChHHHHHHHHHHHHhcccccCCCCCc
Q 023680 7 NLSSEDLNLCFEKMMMAGAGADRAGGVK 34 (279)
Q Consensus 7 ~l~~e~l~~if~~l~~~~~~~~~~~~~~ 34 (279)
.||+|++.+||++++..+....+++|+.
T Consensus 5 ~LP~~il~~Il~~l~~~~~~~l~~vsk~ 32 (48)
T PF00646_consen 5 DLPDEILQEILSYLDPKDLLRLSLVSKR 32 (48)
T ss_dssp HS-HHHHHHHHHTS-HHHHHHHCTT-HH
T ss_pred HCCHHHHHHHHHHCcHHHHHHHHHHhhH
Confidence 6999999999999999998888877764
No 81
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=84.94 E-value=0.66 Score=20.29 Aligned_cols=12 Identities=50% Similarity=0.816 Sum_probs=8.1
Q ss_pred CCCCEEeccCCC
Q 023680 237 PDLRSLDLCGCV 248 (279)
Q Consensus 237 ~~L~~L~l~~c~ 248 (279)
++|+.|++++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 478888888887
No 82
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=83.29 E-value=2.4 Score=36.69 Aligned_cols=112 Identities=24% Similarity=0.134 Sum_probs=55.5
Q ss_pred HHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHH
Q 023680 98 LSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALA 177 (279)
Q Consensus 98 ~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 177 (279)
......+++|.-|+++ ...+.+--.. . .....|+.|+++.. .+. .+.......-.|+.+-.+. +++..-...
T Consensus 428 ~~~l~~l~kLt~L~L~--NN~Ln~LP~e-~-~~lv~Lq~LnlS~N-rFr--~lP~~~y~lq~lEtllas~-nqi~~vd~~ 499 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLS--NNLLNDLPEE-M-GSLVRLQTLNLSFN-RFR--MLPECLYELQTLETLLASN-NQIGSVDPS 499 (565)
T ss_pred hHHHHhhhcceeeecc--cchhhhcchh-h-hhhhhhheeccccc-ccc--cchHHHhhHHHHHHHHhcc-ccccccChH
Confidence 3344577889999998 3333221111 1 12445899999874 221 1111111111222222221 122221111
Q ss_pred HHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCC
Q 023680 178 YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE 222 (279)
Q Consensus 178 ~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 222 (279)
-++++.+|.+||+.+.+ -.....+..++++|++|++.+++
T Consensus 500 -~l~nm~nL~tLDL~nNd----lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 -GLKNMRNLTTLDLQNND----LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred -HhhhhhhcceeccCCCc----hhhCChhhccccceeEEEecCCc
Confidence 12356778888887633 12333445568888888888765
No 83
>PF13013 F-box-like_2: F-box-like domain
Probab=82.84 E-value=1.1 Score=31.01 Aligned_cols=30 Identities=30% Similarity=0.594 Sum_probs=26.8
Q ss_pred CCCCCCHHHHHHHcccCChhHHHHHHhcCh
Q 023680 42 EWKDIPMELLLRILSLVDEPTVIVASGVCS 71 (279)
Q Consensus 42 ~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~ 71 (279)
.+.+||.|++..||.+.+..++..+...|+
T Consensus 21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 578899999999999999988888887777
No 84
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=80.55 E-value=1.3 Score=38.14 Aligned_cols=65 Identities=26% Similarity=0.214 Sum_probs=42.3
Q ss_pred HcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 023680 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT 251 (279)
Q Consensus 181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 251 (279)
+.+|+|+.|+|++.. ++...-.++. ....+++|.+..+. +.... ...+++..+|+.|++.++. ||
T Consensus 271 ~~L~~L~~lnlsnN~--i~~i~~~aFe-~~a~l~eL~L~~N~-l~~v~-~~~f~~ls~L~tL~L~~N~-it 335 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNK--ITRIEDGAFE-GAAELQELYLTRNK-LEFVS-SGMFQGLSGLKTLSLYDNQ-IT 335 (498)
T ss_pred hhcccceEeccCCCc--cchhhhhhhc-chhhhhhhhcCcch-HHHHH-HHhhhccccceeeeecCCe-eE
Confidence 356888888888844 5544433342 35668888887743 32221 3345778899999999975 54
No 85
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=79.25 E-value=1.9 Score=29.20 Aligned_cols=25 Identities=20% Similarity=0.503 Sum_probs=22.8
Q ss_pred CCCCCCCHHHHHHHcccCChhHHHH
Q 023680 41 TEWKDIPMELLLRILSLVDEPTVIV 65 (279)
Q Consensus 41 ~~~~~Lp~~il~~I~~~L~~~~l~~ 65 (279)
..|..||.|+-..|+++|+..|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999998754
No 86
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=77.61 E-value=0.063 Score=40.40 Aligned_cols=133 Identities=20% Similarity=0.168 Sum_probs=76.0
Q ss_pred CCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 023680 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (279)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (279)
..++++|.+++ ..++. +-..++. ..+|+.|++.+. .+ +.+..-..++|.|+.|+++-. .+. .+..-.+.+
T Consensus 32 ~s~ITrLtLSH--NKl~~-vppnia~-l~nlevln~~nn-qi--e~lp~~issl~klr~lnvgmn-rl~--~lprgfgs~ 101 (264)
T KOG0617|consen 32 MSNITRLTLSH--NKLTV-VPPNIAE-LKNLEVLNLSNN-QI--EELPTSISSLPKLRILNVGMN-RLN--ILPRGFGSF 101 (264)
T ss_pred hhhhhhhhccc--Cceee-cCCcHHH-hhhhhhhhcccc-hh--hhcChhhhhchhhhheecchh-hhh--cCccccCCC
Confidence 45677777772 22221 1112333 678888888873 33 334444556788888888632 111 122223467
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT 251 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 251 (279)
|.|+.|++.+.+ +....+..=+-.++.|+.|.++.+. .+.+..-+...++|+.|.+..+..++
T Consensus 102 p~levldltynn--l~e~~lpgnff~m~tlralyl~dnd---fe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 102 PALEVLDLTYNN--LNENSLPGNFFYMTTLRALYLGDND---FEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred chhhhhhccccc--cccccCCcchhHHHHHHHHHhcCCC---cccCChhhhhhcceeEEeeccCchhh
Confidence 899999998854 5554443211124557777777643 11122223556889999999887665
No 87
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=77.10 E-value=1.3 Score=40.09 Aligned_cols=39 Identities=28% Similarity=0.505 Sum_probs=35.3
Q ss_pred CCCCCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhh
Q 023680 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI 77 (279)
Q Consensus 39 ~~~~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~ 77 (279)
..+.+.-||.++...|+.+|+.+++..+++||+.|+...
T Consensus 104 ~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~ 142 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLL 142 (537)
T ss_pred ccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhh
Confidence 346788899999999999999999999999999999875
No 88
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=76.03 E-value=2.4 Score=20.94 Aligned_cols=8 Identities=38% Similarity=0.796 Sum_probs=2.9
Q ss_pred HHHHHhcC
Q 023680 229 VMNLAYGC 236 (279)
Q Consensus 229 l~~l~~~~ 236 (279)
+..++.+|
T Consensus 18 l~~LlS~C 25 (26)
T PF07723_consen 18 LERLLSGC 25 (26)
T ss_pred HHHhhccC
Confidence 33333333
No 89
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=73.54 E-value=1.8 Score=20.27 Aligned_cols=13 Identities=46% Similarity=0.652 Sum_probs=10.4
Q ss_pred CCCEEeccCCCCCC
Q 023680 238 DLRSLDLCGCVCIT 251 (279)
Q Consensus 238 ~L~~L~l~~c~~i~ 251 (279)
+|++|++++|. ++
T Consensus 1 ~L~~Ldls~n~-l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNN-LT 13 (22)
T ss_dssp TESEEEETSSE-ES
T ss_pred CccEEECCCCc-CE
Confidence 58899999984 65
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=72.71 E-value=0.41 Score=34.02 Aligned_cols=81 Identities=16% Similarity=0.381 Sum_probs=28.0
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHh
Q 023680 155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY 234 (279)
Q Consensus 155 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 234 (279)
..|++|+.+.+... +..-+-.. ..+++.|+.+.+......+.+ .....+++|+.+.+... ++.-+-. .+.
T Consensus 32 ~~~~~l~~i~~~~~--~~~i~~~~-F~~~~~l~~i~~~~~~~~i~~----~~F~~~~~l~~i~~~~~--~~~i~~~-~f~ 101 (129)
T PF13306_consen 32 SNCTSLKSINFPNN--LTSIGDNA-FSNCKSLESITFPNNLKSIGD----NAFSNCTNLKNIDIPSN--ITEIGSS-SFS 101 (129)
T ss_dssp TT-TT-SEEEESST--TSCE-TTT-TTT-TT-EEEEETSTT-EE-T----TTTTT-TTECEEEETTT---BEEHTT-TTT
T ss_pred cccccccccccccc--ccccceee-eeccccccccccccccccccc----ccccccccccccccCcc--ccEEchh-hhc
Confidence 34556666666541 11111111 124455666666441110111 12234566666666432 2211111 124
Q ss_pred cCCCCCEEeccC
Q 023680 235 GCPDLRSLDLCG 246 (279)
Q Consensus 235 ~~~~L~~L~l~~ 246 (279)
++ +|+.+.+..
T Consensus 102 ~~-~l~~i~~~~ 112 (129)
T PF13306_consen 102 NC-NLKEINIPS 112 (129)
T ss_dssp T--T--EEE-TT
T ss_pred CC-CceEEEECC
Confidence 44 666666654
No 91
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=72.44 E-value=2.4 Score=30.02 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=4.6
Q ss_pred HHHHHhcCCCC
Q 023680 229 VMNLAYGCPDL 239 (279)
Q Consensus 229 l~~l~~~~~~L 239 (279)
+..++.+|++|
T Consensus 78 ~~~mF~~~~~l 88 (120)
T PF03382_consen 78 MSNMFSGCSSL 88 (120)
T ss_pred HHHHHhhhHHc
Confidence 33344444444
No 92
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=70.61 E-value=4.6 Score=35.05 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=9.6
Q ss_pred hcCCCCCEEeccCCC
Q 023680 234 YGCPDLRSLDLCGCV 248 (279)
Q Consensus 234 ~~~~~L~~L~l~~c~ 248 (279)
...+.|+.|++++|.
T Consensus 252 ~~l~~l~~L~~s~n~ 266 (394)
T COG4886 252 GNLSNLETLDLSNNQ 266 (394)
T ss_pred ccccccceecccccc
Confidence 445567777777765
No 93
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=69.36 E-value=3.2 Score=35.98 Aligned_cols=103 Identities=25% Similarity=0.266 Sum_probs=45.4
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCC
Q 023680 133 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ 212 (279)
Q Consensus 133 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~ 212 (279)
+|+.|++++. .+... ..-...+++|+.|++..+ .+++ +.......+.|+.|++++.. +.+- ........+
T Consensus 141 nL~~L~l~~N-~i~~l--~~~~~~l~~L~~L~l~~N-~l~~--l~~~~~~~~~L~~L~ls~N~--i~~l--~~~~~~~~~ 210 (394)
T COG4886 141 NLKELDLSDN-KIESL--PSPLRNLPNLKNLDLSFN-DLSD--LPKLLSNLSNLNNLDLSGNK--ISDL--PPEIELLSA 210 (394)
T ss_pred hccccccccc-chhhh--hhhhhccccccccccCCc-hhhh--hhhhhhhhhhhhheeccCCc--cccC--chhhhhhhh
Confidence 5666666552 22221 112344566666666654 2222 22222244666666666633 2211 111122334
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 213 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
|++|.++++..+... ......+++..+.+.++.
T Consensus 211 L~~l~~~~N~~~~~~---~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 211 LEELDLSNNSIIELL---SSLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhhhhhcCCcceecc---hhhhhcccccccccCCce
Confidence 666666664212211 112333555555555544
No 94
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=68.15 E-value=27 Score=29.52 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=12.2
Q ss_pred hcCCCCCEEeccCCCCCChHHHHHH
Q 023680 234 YGCPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 234 ~~~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
.-|+.|++|++.++. ||+.++.++
T Consensus 252 ~~n~sl~slnvesnF-Itg~gi~a~ 275 (353)
T KOG3735|consen 252 KENKSLTSLNVESNF-ITGLGIMAL 275 (353)
T ss_pred hhcchhhheeccccc-cccHHHHHH
Confidence 344555555555533 555555544
No 95
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=65.25 E-value=4.3 Score=28.71 Aligned_cols=108 Identities=16% Similarity=0.298 Sum_probs=57.0
Q ss_pred HHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHH
Q 023680 126 AIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQA 205 (279)
Q Consensus 126 ~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~ 205 (279)
.+...|++++ .++..-.......+..+...|+.| ..+++.-.--.-..+..+...++.|.. +|+.-+- -.-..+..
T Consensus 5 ~~F~~~~~l~-~~i~~~dts~vt~m~~mF~~~~~l-~~~l~~w~~s~vt~m~~mF~~~~~l~~-dls~w~~-s~v~~~~~ 80 (120)
T PF03382_consen 5 SMFANCTNLN-IDISNWDTSNVTDMSYMFYGCTSL-NQDLSNWDTSNVTNMSGMFAGCSSLNQ-DLSNWDT-SNVTNMSN 80 (120)
T ss_pred HHHHhchhcc-CCccccccccceeHHHHhhcchhc-cCChhhhcchhheeHHHHHhhhhhcCC-Ccccccc-cccccHHH
Confidence 3445566666 666554333344566677777777 333433211112234555567777777 7765221 11234566
Q ss_pred HHhcCCCCCeEeccC--CCCCCHHHHHHHHhcCCCCC
Q 023680 206 IGRNCNQLQSLNLGW--CEDVGDVGVMNLAYGCPDLR 240 (279)
Q Consensus 206 l~~~~~~L~~L~l~~--~~~i~~~~l~~l~~~~~~L~ 240 (279)
+...++.| ..+|+. ...++. +..++.+|++|+
T Consensus 81 mF~~~~~l-~~~l~~wn~~~v~~--~~~mF~~~~~l~ 114 (120)
T PF03382_consen 81 MFSGCSSL-NQDLSNWNTSSVTN--MSSMFANCSNLN 114 (120)
T ss_pred HHhhhHHc-CCchhhcccccccc--HHHHHhChHhcc
Confidence 66667777 455542 222333 556667776654
No 96
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=63.92 E-value=2.5 Score=37.05 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=54.3
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHh
Q 023680 155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY 234 (279)
Q Consensus 155 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 234 (279)
..+++|+.|++... .+ ..+..+..++++|+.|++++.. |++ +..+. .++.|+.|++.++. |+.. ..+ .
T Consensus 92 ~~~~~l~~l~l~~n-~i--~~i~~~l~~~~~L~~L~ls~N~--I~~--i~~l~-~l~~L~~L~l~~N~-i~~~--~~~-~ 159 (414)
T KOG0531|consen 92 SKLKSLEALDLYDN-KI--EKIENLLSSLVNLQVLDLSFNK--ITK--LEGLS-TLTLLKELNLSGNL-ISDI--SGL-E 159 (414)
T ss_pred ccccceeeeecccc-ch--hhcccchhhhhcchheeccccc--ccc--ccchh-hccchhhheeccCc-chhc--cCC-c
Confidence 44678899998764 22 2333324478999999999844 432 23333 35569999999965 4432 111 2
Q ss_pred cCCCCCEEeccCCCCC
Q 023680 235 GCPDLRSLDLCGCVCI 250 (279)
Q Consensus 235 ~~~~L~~L~l~~c~~i 250 (279)
.++.|+.+++++|...
T Consensus 160 ~l~~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 160 SLKSLKLLDLSYNRIV 175 (414)
T ss_pred cchhhhcccCCcchhh
Confidence 2588999999998733
No 97
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=60.61 E-value=34 Score=28.94 Aligned_cols=99 Identities=18% Similarity=0.220 Sum_probs=54.9
Q ss_pred CCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC---CCCEEEecCCCCCCH---HHHHHHHHcCCCCcEEEcC
Q 023680 119 LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP---NLTRLNISGCTSFSD---HALAYLCGFCRKLKILNLC 192 (279)
Q Consensus 119 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~---~L~~L~L~~~~~~~~---~~~~~l~~~~~~L~~L~L~ 192 (279)
..+..+..+...=+++...++.+...++...+..+.+.+. ..+...+.+ +..++ .++..+...++.|++|++.
T Consensus 185 ~~e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 185 DVESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred hHHHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheecc
Confidence 3444555666666777777777766677666666655443 344444433 12222 2344445556777777777
Q ss_pred CCCCCCCHHHHHHHHhc---CCCCCeEeccC
Q 023680 193 GCVKAATDYALQAIGRN---CNQLQSLNLGW 220 (279)
Q Consensus 193 ~~~~~~~~~~~~~l~~~---~~~L~~L~l~~ 220 (279)
+ +.|+..++-++... -..|..+.+.+
T Consensus 264 s--nFItg~gi~a~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 264 S--NFITGLGIMALLRALQSNKSLTELKNDN 292 (353)
T ss_pred c--cccccHHHHHHHHHHhccchhhHhhhhh
Confidence 6 33777776655332 23455555543
No 98
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=54.16 E-value=4.5 Score=33.63 Aligned_cols=71 Identities=13% Similarity=0.049 Sum_probs=43.2
Q ss_pred CCChHHHHHHHHHHHH-----hcccccCCCCCccCC--CCCCCCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhcC
Q 023680 7 NLSSEDLNLCFEKMMM-----AGAGADRAGGVKMDG--VVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (279)
Q Consensus 7 ~l~~e~l~~if~~l~~-----~~~~~~~~~~~~~~~--~~~~~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~~ 79 (279)
.||+|++..||+++.. .++...+.+|+.... ..+..|..---.++.+-.-.+....+. +..-..|++.+..
T Consensus 109 ~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~--sky~~SWR~Mfl~ 186 (366)
T KOG2997|consen 109 VLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQ--SKYYTSWREMFLE 186 (366)
T ss_pred hCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhh--hHHHhHHHHHHhh
Confidence 6999999999999875 556666667764321 222334433334444444445444433 6677789987754
No 99
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=53.61 E-value=40 Score=27.55 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.7
Q ss_pred CCCCCCCCCHHHHHHHcccC-ChhHHHHHHhcChhHHHh
Q 023680 39 VITEWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDA 76 (279)
Q Consensus 39 ~~~~~~~Lp~~il~~I~~~L-~~~~l~~~~~vc~~w~~~ 76 (279)
....+.+||.++..+|+.++ +.+|+..++++-...+.+
T Consensus 198 ~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l 236 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKL 236 (332)
T ss_pred CCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHH
Confidence 35679999999999999999 778888888876654443
No 100
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=47.63 E-value=65 Score=19.82 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=7.7
Q ss_pred CCCeEecCCCCCCCHHHH
Q 023680 133 DLQDLDLSKSFKLSDRSL 150 (279)
Q Consensus 133 ~L~~L~L~~~~~~~~~~l 150 (279)
+++.+.+.+...++-+.+
T Consensus 12 ~~~~l~i~~~~~it~~~L 29 (70)
T PF07735_consen 12 NLEKLSISSSNWITLDDL 29 (70)
T ss_pred CCCEEEEccCCcccHHHH
Confidence 444444443334443333
No 101
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=44.23 E-value=20 Score=17.11 Aligned_cols=12 Identities=50% Similarity=0.794 Sum_probs=10.0
Q ss_pred CCCCEEeccCCC
Q 023680 237 PDLRSLDLCGCV 248 (279)
Q Consensus 237 ~~L~~L~l~~c~ 248 (279)
++|++|++++|.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00369 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 678999999874
No 102
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=44.23 E-value=20 Score=17.11 Aligned_cols=12 Identities=50% Similarity=0.794 Sum_probs=10.0
Q ss_pred CCCCEEeccCCC
Q 023680 237 PDLRSLDLCGCV 248 (279)
Q Consensus 237 ~~L~~L~l~~c~ 248 (279)
++|++|++++|.
T Consensus 2 ~~L~~L~L~~N~ 13 (26)
T smart00370 2 PNLRELDLSNNQ 13 (26)
T ss_pred CCCCEEECCCCc
Confidence 678999999874
No 103
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=39.54 E-value=8.8 Score=34.90 Aligned_cols=58 Identities=12% Similarity=0.026 Sum_probs=26.7
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 213 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
|..||++++ .|+. +..-+..+.+|++|-|.+|+.-++.+-.=. .++-..+|-+.+-||
T Consensus 213 Li~lDfScN-kis~--iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~----kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 213 LIRLDFSCN-KISY--LPVDFRKMRHLQVLQLENNPLQSPPAQICE----KGKVHIFKYLSTQAC 270 (722)
T ss_pred eeeeecccC-ceee--cchhhhhhhhheeeeeccCCCCCChHHHHh----ccceeeeeeecchhc
Confidence 566666553 2433 222234455666666666654333222111 334444444444444
No 104
>PHA02989 ankyrin repeat protein; Provisional
Probab=37.85 E-value=28 Score=31.35 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCCCCCCHHHHHHHcccCChhHHHHHHh
Q 023680 41 TEWKDIPMELLLRILSLVDEPTVIVASG 68 (279)
Q Consensus 41 ~~~~~Lp~~il~~I~~~L~~~~l~~~~~ 68 (279)
..|..||.|+...|+++|+..|+.....
T Consensus 457 ~~w~~LP~Eik~~Il~~L~~~dl~~i~~ 484 (494)
T PHA02989 457 NYWMYLPIEIQINILEYLTFSDFKTILK 484 (494)
T ss_pred cHHHhCCHHHHHHHHHcCCHHHHHHHHh
Confidence 6799999999999999999999865544
No 105
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=36.87 E-value=36 Score=16.73 Aligned_cols=12 Identities=33% Similarity=0.423 Sum_probs=7.8
Q ss_pred CCCCEEeccCCC
Q 023680 237 PDLRSLDLCGCV 248 (279)
Q Consensus 237 ~~L~~L~l~~c~ 248 (279)
.+|+.|++++|.
T Consensus 2 ~~L~~L~L~~Nk 13 (26)
T smart00365 2 TNLEELDLSQNK 13 (26)
T ss_pred CccCEEECCCCc
Confidence 466777777654
No 106
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=34.71 E-value=31 Score=17.04 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=11.1
Q ss_pred HHHhcCCCCCEEeccC
Q 023680 231 NLAYGCPDLRSLDLCG 246 (279)
Q Consensus 231 ~l~~~~~~L~~L~l~~ 246 (279)
.++..+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3456678888888754
No 107
>PHA03100 ankyrin repeat protein; Provisional
Probab=34.25 E-value=31 Score=30.74 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHcccCChhHHHHHH
Q 023680 41 TEWKDIPMELLLRILSLVDEPTVIVAS 67 (279)
Q Consensus 41 ~~~~~Lp~~il~~I~~~L~~~~l~~~~ 67 (279)
..|..||.||...|+++|+..|+....
T Consensus 446 ~~w~~lP~Eik~~Il~~l~~~dl~~~~ 472 (480)
T PHA03100 446 TYWNILPIEIKYKILEYLSNRDLKSLI 472 (480)
T ss_pred CchhhCcHHHHHHHHHhCCHHHHHHHH
Confidence 579999999999999999999886544
No 108
>PHA02875 ankyrin repeat protein; Provisional
Probab=30.34 E-value=29 Score=30.26 Aligned_cols=26 Identities=19% Similarity=0.442 Sum_probs=22.7
Q ss_pred CCCCCCCCHHHHHHHcccCChhHHHH
Q 023680 40 ITEWKDIPMELLLRILSLVDEPTVIV 65 (279)
Q Consensus 40 ~~~~~~Lp~~il~~I~~~L~~~~l~~ 65 (279)
...|..||.|+-.+|+++|+..|+..
T Consensus 384 ~~~w~~LP~Eik~~Il~~l~~~dL~~ 409 (413)
T PHA02875 384 ESKWNILPHEIKYLILEKIGNKDIDI 409 (413)
T ss_pred ccchhcCcHHHHHHHHHHhccchhhh
Confidence 46799999999999999998888743
No 109
>PF03448 MgtE_N: MgtE intracellular N domain; InterPro: IPR006668 This domain is found at the N terminus of eubacterial magnesium transporters of the MgtE family IPR006667 from INTERPRO. This domain is an intracellular domain that has an alpha-helical structure. The crystal structure of the MgtE transporter [] shows two of 5 magnesium ions are in the interface between the N domain and the CBS domains. In the absence of magnesium there is a large shift between the N and CBS domains.; PDB: 2YVX_D 2ZY9_A 2YVZ_B 2YVY_A 2OUX_A 3KXR_A.
Probab=25.47 E-value=75 Score=21.22 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=17.3
Q ss_pred CCCCCCCHHHHHHHcccCChhHHHHH
Q 023680 41 TEWKDIPMELLLRILSLVDEPTVIVA 66 (279)
Q Consensus 41 ~~~~~Lp~~il~~I~~~L~~~~l~~~ 66 (279)
.-+..++.+-+..|+..++..+++.+
T Consensus 44 ~il~~l~~~~~a~il~~m~~dd~~~l 69 (102)
T PF03448_consen 44 EILEALSPEEAAEILAEMDSDDAADL 69 (102)
T ss_dssp HCCCCS-HHHHHHHHCCS-HHHHHHH
T ss_pred HHHHhCCHHHHHHHHHccChHHHHHH
Confidence 44777888888888888877666554
No 110
>PHA02878 ankyrin repeat protein; Provisional
Probab=25.24 E-value=47 Score=29.70 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHcccCChhHHHH
Q 023680 41 TEWKDIPMELLLRILSLVDEPTVIV 65 (279)
Q Consensus 41 ~~~~~Lp~~il~~I~~~L~~~~l~~ 65 (279)
..|..||.||-..|+++|+..|+..
T Consensus 445 ~~w~~lP~Eik~~Il~~l~~~dl~~ 469 (477)
T PHA02878 445 YMWNRLPLEIKHYIMELLDDASLCN 469 (477)
T ss_pred CcHhhCCHHHHHHHHHHcCcHHHHH
Confidence 5699999999999999999888744
No 111
>PHA02798 ankyrin-like protein; Provisional
Probab=23.71 E-value=52 Score=29.58 Aligned_cols=25 Identities=20% Similarity=0.602 Sum_probs=22.1
Q ss_pred CCCCCCCCHHHHHHHcccCChhHHH
Q 023680 40 ITEWKDIPMELLLRILSLVDEPTVI 64 (279)
Q Consensus 40 ~~~~~~Lp~~il~~I~~~L~~~~l~ 64 (279)
...|..||.|+-..|+.+|+..|+.
T Consensus 461 ~~~w~~lP~Eik~~Il~~L~~~dl~ 485 (489)
T PHA02798 461 LSYWNYIPNEIKFKIINNLSNNDIL 485 (489)
T ss_pred cchhhhCCHHHHHHHHHcCChHHHH
Confidence 3679999999999999999988864
No 112
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=22.87 E-value=60 Score=16.03 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=8.2
Q ss_pred CCCCEEeccCCC
Q 023680 237 PDLRSLDLCGCV 248 (279)
Q Consensus 237 ~~L~~L~l~~c~ 248 (279)
++|+.|++++|.
T Consensus 2 ~~L~~L~vs~N~ 13 (26)
T smart00364 2 PSLKELNVSNNQ 13 (26)
T ss_pred cccceeecCCCc
Confidence 457777777765
No 113
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=22.67 E-value=72 Score=27.13 Aligned_cols=37 Identities=35% Similarity=0.760 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHHHcccCCh--------hHHHHHHhcChhHHHhh
Q 023680 41 TEWKDIPMELLLRILSLVDE--------PTVIVASGVCSGWRDAI 77 (279)
Q Consensus 41 ~~~~~Lp~~il~~I~~~L~~--------~~l~~~~~vc~~w~~~~ 77 (279)
..|.+||.+.+..++.+.+. +..+.++.+|+.|+...
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~ 87 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREIS 87 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhc
Confidence 68999999999999998732 35677888999999864
No 114
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=21.61 E-value=1.9e+02 Score=20.64 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=23.8
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccC
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGW 220 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~ 220 (279)
|+=+.++|.+- -++..+..+.+.||+|+.+.+..
T Consensus 17 ~nE~~VHlAFR---PSN~Dif~Lv~~CP~lk~iqiP~ 50 (131)
T PF08004_consen 17 PNEEIVHLAFR---PSNKDIFSLVERCPNLKAIQIPP 50 (131)
T ss_pred CCceEEEEEec---CcchHHHHHHHhCCCCeEEeCCh
Confidence 55666677663 34566667777899999998854
Done!