Query 023680
Match_columns 279
No_of_seqs 170 out of 2119
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 10:58:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 100.0 8.4E-27 2.9E-31 196.2 23.4 227 40-277 6-257 (336)
2 2p1m_B Transport inhibitor res 99.9 9.2E-25 3.2E-29 197.1 16.5 225 40-277 3-245 (594)
3 2ast_B S-phase kinase-associat 99.9 1.9E-23 6.5E-28 175.7 12.8 262 5-277 9-282 (336)
4 3ogk_B Coronatine-insensitive 99.9 2.2E-22 7.7E-27 181.5 14.3 199 43-248 13-231 (592)
5 3ogk_B Coronatine-insensitive 99.8 2.4E-18 8.1E-23 155.2 19.9 175 97-279 334-525 (592)
6 2p1m_B Transport inhibitor res 99.8 8.9E-18 3.1E-22 151.4 20.6 167 103-279 336-518 (594)
7 2ca6_A RAN GTPase-activating p 99.7 4.4E-15 1.5E-19 127.0 19.8 194 78-279 93-315 (386)
8 2ca6_A RAN GTPase-activating p 99.6 5.4E-14 1.8E-18 120.2 20.4 194 78-279 59-286 (386)
9 3un9_A NLR family member X1; l 99.6 9E-14 3.1E-18 118.1 19.5 181 77-265 70-266 (372)
10 3e4g_A ATP synthase subunit S, 99.6 1.7E-15 5.8E-20 113.6 6.2 92 159-254 62-156 (176)
11 1z7x_W Ribonuclease inhibitor; 99.6 7.1E-14 2.4E-18 122.1 17.0 193 78-279 27-239 (461)
12 1z7x_W Ribonuclease inhibitor; 99.6 1E-13 3.5E-18 121.1 17.9 166 105-278 142-324 (461)
13 3e4g_A ATP synthase subunit S, 99.6 3.4E-15 1.2E-19 112.0 6.4 104 133-240 62-170 (176)
14 3un9_A NLR family member X1; l 99.5 9.2E-14 3.2E-18 118.0 14.0 168 103-279 70-251 (372)
15 3goz_A Leucine-rich repeat-con 99.4 2.6E-12 8.8E-17 108.9 15.9 190 80-278 52-264 (362)
16 1io0_A Tropomodulin; LRR prote 99.3 9.7E-11 3.3E-15 89.5 16.4 128 122-254 26-167 (185)
17 3goz_A Leucine-rich repeat-con 99.3 1.7E-11 5.7E-16 103.9 11.0 192 80-279 23-237 (362)
18 2ra8_A Uncharacterized protein 99.2 4.1E-11 1.4E-15 101.1 10.3 171 79-260 139-329 (362)
19 1io0_A Tropomodulin; LRR prote 99.2 2.3E-10 7.8E-15 87.5 13.2 128 147-279 25-163 (185)
20 2ra8_A Uncharacterized protein 99.2 3.4E-11 1.2E-15 101.6 6.5 168 102-279 136-319 (362)
21 4ezg_A Putative uncharacterize 99.1 2.7E-11 9.3E-16 93.6 2.8 148 80-248 45-192 (197)
22 4fmz_A Internalin; leucine ric 99.1 4.6E-10 1.6E-14 94.3 10.5 128 129-279 218-345 (347)
23 4fmz_A Internalin; leucine ric 99.1 4.3E-10 1.5E-14 94.4 10.0 107 154-279 217-323 (347)
24 1h6u_A Internalin H; cell adhe 99.0 4.2E-10 1.4E-14 93.1 6.8 167 78-278 62-228 (308)
25 2je0_A Acidic leucine-rich nuc 99.0 1.3E-10 4.4E-15 85.5 2.3 107 130-245 40-148 (149)
26 2je0_A Acidic leucine-rich nuc 99.0 1E-10 3.5E-15 86.0 1.5 133 131-275 16-148 (149)
27 2ell_A Acidic leucine-rich nuc 98.9 3.7E-11 1.3E-15 90.3 -2.1 134 103-248 22-158 (168)
28 1h6u_A Internalin H; cell adhe 98.9 1.2E-09 4.2E-14 90.3 6.4 167 79-279 41-207 (308)
29 1h6t_A Internalin B; cell adhe 98.9 1.8E-09 6.3E-14 88.5 7.4 166 79-278 46-211 (291)
30 2ell_A Acidic leucine-rich nuc 98.9 7.5E-11 2.6E-15 88.6 -2.3 136 131-278 23-158 (168)
31 1m9s_A Internalin B; cell inva 98.9 1.2E-09 4.2E-14 98.3 5.1 166 79-278 43-208 (605)
32 4ezg_A Putative uncharacterize 98.9 6.3E-10 2.2E-14 85.8 2.7 152 103-279 42-193 (197)
33 1wwl_A Monocyte differentiatio 98.9 6.3E-10 2.2E-14 92.2 2.3 162 78-248 94-264 (312)
34 1ozn_A Reticulon 4 receptor; N 98.9 7.7E-11 2.6E-15 96.3 -3.3 11 103-113 78-88 (285)
35 1pgv_A TMD-1, tropomodulin TMD 98.9 1.3E-07 4.4E-12 72.1 14.7 125 121-248 30-168 (197)
36 1ozn_A Reticulon 4 receptor; N 98.8 4.2E-11 1.4E-15 97.9 -5.3 131 80-221 33-163 (285)
37 4fcg_A Uncharacterized protein 98.8 1.3E-10 4.6E-15 97.0 -2.4 107 157-278 182-288 (328)
38 1o6v_A Internalin A; bacterial 98.8 1E-08 3.5E-13 89.6 9.4 10 80-89 178-187 (466)
39 4fcg_A Uncharacterized protein 98.8 6.2E-11 2.1E-15 99.0 -4.9 14 235-248 275-288 (328)
40 1fs1_A SKP2 F-BOX, cyclin A/CD 98.8 4.3E-09 1.5E-13 62.7 4.6 40 40-79 6-45 (53)
41 2z66_A Variable lymphocyte rec 98.8 1E-11 3.5E-16 102.6 -9.7 134 130-277 124-258 (306)
42 4glp_A Monocyte differentiatio 98.8 7.1E-10 2.4E-14 91.8 1.3 183 78-279 90-284 (310)
43 1wwl_A Monocyte differentiatio 98.8 1.9E-09 6.6E-14 89.3 3.5 181 78-278 120-307 (312)
44 3v47_A TOLL-like receptor 5B a 98.8 5.4E-10 1.9E-14 97.3 -0.0 15 264-278 368-382 (455)
45 1o6v_A Internalin A; bacterial 98.8 9.8E-09 3.4E-13 89.8 8.0 79 182-277 307-385 (466)
46 3rfs_A Internalin B, repeat mo 98.8 3.1E-10 1.1E-14 92.2 -1.8 14 235-248 203-216 (272)
47 2z66_A Variable lymphocyte rec 98.8 1.4E-11 4.7E-16 101.8 -10.4 184 79-279 52-235 (306)
48 3v47_A TOLL-like receptor 5B a 98.7 1.1E-09 3.9E-14 95.3 0.3 39 234-278 296-334 (455)
49 2z7x_B TOLL-like receptor 1, v 98.7 1.5E-09 5E-14 96.3 0.7 65 184-255 421-486 (520)
50 3t6q_A CD180 antigen; protein- 98.7 2E-10 7E-15 103.6 -5.3 63 182-248 447-511 (606)
51 3vq2_A TLR4, TOLL-like recepto 98.7 6.3E-11 2.2E-15 107.0 -9.0 63 182-248 446-508 (606)
52 2z63_A TOLL-like receptor 4, v 98.7 3.5E-11 1.2E-15 107.8 -10.7 111 155-277 418-528 (570)
53 1pgv_A TMD-1, tropomodulin TMD 98.7 2.5E-07 8.4E-12 70.6 11.8 125 147-275 30-165 (197)
54 1h6t_A Internalin B; cell adhe 98.7 9.3E-09 3.2E-13 84.3 4.1 147 103-279 44-190 (291)
55 2z63_A TOLL-like receptor 4, v 98.7 5.4E-11 1.8E-15 106.6 -10.2 135 131-279 372-506 (570)
56 3o53_A Protein LRIM1, AGAP0063 98.7 8.4E-10 2.9E-14 91.6 -2.8 140 103-258 118-257 (317)
57 3rfs_A Internalin B, repeat mo 98.7 1.1E-09 3.6E-14 89.0 -2.2 176 79-278 41-216 (272)
58 3t6q_A CD180 antigen; protein- 98.7 2.2E-10 7.5E-15 103.5 -7.1 91 182-279 398-488 (606)
59 3rgz_A Protein brassinosteroid 98.7 1.4E-09 4.9E-14 100.9 -1.9 157 79-248 100-258 (768)
60 4glp_A Monocyte differentiatio 98.7 6.8E-09 2.3E-13 85.8 2.3 184 80-279 65-263 (310)
61 1m9s_A Internalin B; cell inva 98.6 3.2E-08 1.1E-12 89.1 6.4 149 78-253 64-212 (605)
62 3vq2_A TLR4, TOLL-like recepto 98.6 1.5E-10 5.2E-15 104.5 -8.9 112 156-278 397-508 (606)
63 2o6q_A Variable lymphocyte rec 98.6 4.8E-10 1.6E-14 90.9 -5.3 157 79-249 61-217 (270)
64 2z80_A TOLL-like receptor 2, v 98.6 1.4E-09 4.8E-14 91.6 -2.6 84 79-168 76-159 (353)
65 3zyj_A Leucine-rich repeat-con 98.6 6.5E-10 2.2E-14 96.5 -5.2 33 79-113 88-120 (440)
66 2z81_A CD282 antigen, TOLL-lik 98.6 3.1E-08 1.1E-12 88.2 5.4 155 103-278 332-508 (549)
67 3zyi_A Leucine-rich repeat-con 98.6 8.1E-10 2.8E-14 96.3 -4.8 60 209-276 240-299 (452)
68 1xku_A Decorin; proteoglycan, 98.6 6.2E-09 2.1E-13 86.8 0.7 83 184-278 192-274 (330)
69 1xeu_A Internalin C; cellular 98.6 1.4E-08 4.7E-13 82.0 2.6 143 79-248 41-183 (263)
70 2z80_A TOLL-like receptor 2, v 98.6 3E-09 1E-13 89.6 -1.7 85 79-168 100-184 (353)
71 3zyi_A Leucine-rich repeat-con 98.6 1.4E-09 5E-14 94.7 -4.2 133 131-279 146-278 (452)
72 2o6q_A Variable lymphocyte rec 98.6 9.4E-10 3.2E-14 89.2 -5.3 178 80-277 38-215 (270)
73 3rgz_A Protein brassinosteroid 98.5 2E-09 6.7E-14 100.0 -4.2 159 103-279 98-259 (768)
74 3m19_A Variable lymphocyte rec 98.5 2E-09 6.8E-14 86.3 -4.6 157 80-250 36-192 (251)
75 2id5_A Lingo-1, leucine rich r 98.5 3.9E-09 1.3E-13 92.5 -3.2 60 212-279 225-284 (477)
76 3bz5_A Internalin-J, INLJ; leu 98.5 7.2E-08 2.5E-12 84.1 4.8 55 210-278 169-223 (457)
77 3o6n_A APL1; leucine-rich repe 98.5 3.8E-09 1.3E-13 90.2 -3.3 83 79-168 93-175 (390)
78 3bz5_A Internalin-J, INLJ; leu 98.5 7.2E-08 2.4E-12 84.1 4.7 139 79-248 85-223 (457)
79 3oja_A Leucine-rich immune mol 98.5 4.6E-09 1.6E-13 92.4 -2.9 108 157-279 119-226 (487)
80 2z7x_B TOLL-like receptor 1, v 98.5 4.3E-08 1.5E-12 86.8 3.2 177 79-278 302-479 (520)
81 3oja_A Leucine-rich immune mol 98.5 6.6E-09 2.3E-13 91.4 -2.2 137 103-255 118-254 (487)
82 1a9n_A U2A', U2A'; complex (nu 98.5 1.3E-08 4.4E-13 76.9 -0.6 132 103-248 17-151 (176)
83 1xku_A Decorin; proteoglycan, 98.5 7.7E-09 2.6E-13 86.2 -2.2 176 79-279 76-252 (330)
84 3m19_A Variable lymphocyte rec 98.5 5.9E-09 2E-13 83.5 -2.9 155 105-277 35-189 (251)
85 3o53_A Protein LRIM1, AGAP0063 98.5 6.8E-09 2.3E-13 86.1 -2.6 170 79-279 34-203 (317)
86 3oja_B Anopheles plasmodium-re 98.5 7.6E-09 2.6E-13 93.3 -2.5 82 80-168 100-181 (597)
87 1a9n_A U2A', U2A'; complex (nu 98.4 2.6E-08 9E-13 75.2 0.5 129 80-222 20-151 (176)
88 3oja_B Anopheles plasmodium-re 98.4 9.7E-09 3.3E-13 92.6 -2.3 32 80-113 124-155 (597)
89 2id5_A Lingo-1, leucine rich r 98.4 4.2E-09 1.4E-13 92.3 -4.7 179 80-278 33-211 (477)
90 2z62_A TOLL-like receptor 4, v 98.4 1.3E-09 4.6E-14 88.5 -7.3 180 80-279 29-212 (276)
91 3zyj_A Leucine-rich repeat-con 98.4 5.1E-09 1.7E-13 90.9 -4.2 179 80-279 65-243 (440)
92 1xeu_A Internalin C; cellular 98.4 8.1E-08 2.8E-12 77.4 3.0 145 103-278 39-183 (263)
93 3a79_B TLR6, VLRB.59, TOLL-lik 98.4 9.8E-09 3.4E-13 91.9 -2.7 140 103-258 375-518 (562)
94 1ds9_A Outer arm dynein; leuci 98.4 3.9E-09 1.3E-13 81.4 -4.7 126 102-243 45-180 (198)
95 1ogq_A PGIP-2, polygalacturona 98.4 1.3E-10 4.3E-15 96.5 -14.1 58 213-279 199-256 (313)
96 2z81_A CD282 antigen, TOLL-lik 98.4 4.6E-07 1.6E-11 80.7 7.7 110 104-222 309-421 (549)
97 1ogq_A PGIP-2, polygalacturona 98.4 6.1E-10 2.1E-14 92.3 -11.1 60 209-277 219-278 (313)
98 2o6s_A Variable lymphocyte rec 98.4 8.2E-09 2.8E-13 80.2 -4.1 133 104-248 27-159 (208)
99 4ecn_A Leucine-rich repeat pro 98.4 3.2E-08 1.1E-12 92.5 -1.0 132 103-248 489-630 (876)
100 2z62_A TOLL-like receptor 4, v 98.4 4E-09 1.4E-13 85.7 -6.5 160 79-250 52-237 (276)
101 4eco_A Uncharacterized protein 98.3 6.4E-09 2.2E-13 94.5 -6.2 11 157-167 456-466 (636)
102 3o6n_A APL1; leucine-rich repe 98.3 3E-08 1E-12 84.6 -2.0 153 79-248 45-197 (390)
103 1p9a_G Platelet glycoprotein I 98.3 1.4E-08 4.6E-13 83.3 -4.1 154 80-251 32-185 (290)
104 1ziw_A TOLL-like receptor 3; i 98.3 3E-08 1E-12 90.7 -2.8 11 131-141 72-82 (680)
105 1ziw_A TOLL-like receptor 3; i 98.3 4.2E-08 1.4E-12 89.7 -2.3 157 105-277 25-181 (680)
106 4eco_A Uncharacterized protein 98.3 5.7E-08 2E-12 88.2 -1.5 158 78-248 205-388 (636)
107 4ecn_A Leucine-rich repeat pro 98.3 2.7E-07 9.1E-12 86.3 2.8 160 101-279 444-631 (876)
108 3j0a_A TOLL-like receptor 5; m 98.2 1.4E-08 4.9E-13 95.1 -6.5 181 79-277 24-214 (844)
109 3a79_B TLR6, VLRB.59, TOLL-lik 98.2 1.4E-07 4.6E-12 84.5 -0.0 175 79-277 331-507 (562)
110 2v70_A SLIT-2, SLIT homolog 2 98.2 2.2E-08 7.5E-13 78.6 -4.6 144 104-258 31-174 (220)
111 2v9t_B SLIT homolog 2 protein 98.2 2.3E-08 7.9E-13 78.4 -4.7 142 105-258 32-173 (220)
112 2o6s_A Variable lymphocyte rec 98.2 5.2E-08 1.8E-12 75.6 -3.0 132 131-277 27-158 (208)
113 1p9a_G Platelet glycoprotein I 98.2 7.5E-08 2.5E-12 78.8 -2.5 162 78-257 54-215 (290)
114 3e6j_A Variable lymphocyte rec 98.2 7.1E-08 2.4E-12 76.1 -3.3 134 104-250 39-172 (229)
115 1ds9_A Outer arm dynein; leuci 98.1 9.3E-08 3.2E-12 73.6 -3.0 132 128-273 44-180 (198)
116 2v70_A SLIT-2, SLIT homolog 2 98.1 4.8E-08 1.7E-12 76.6 -4.7 133 131-277 31-163 (220)
117 2ft3_A Biglycan; proteoglycan, 98.1 3.1E-08 1.1E-12 82.6 -6.3 65 182-253 215-279 (332)
118 4g8a_A TOLL-like receptor 4; l 98.1 8.7E-08 3E-12 86.6 -4.1 142 105-258 52-196 (635)
119 4g8a_A TOLL-like receptor 4; l 98.1 7E-08 2.4E-12 87.2 -4.8 158 80-248 53-212 (635)
120 2xwt_C Thyrotropin receptor; s 98.1 2.1E-08 7.3E-13 79.6 -7.7 177 79-277 55-236 (239)
121 3e6j_A Variable lymphocyte rec 98.1 1.7E-07 5.8E-12 73.9 -2.8 130 131-276 39-168 (229)
122 2xwt_C Thyrotropin receptor; s 98.0 5.9E-09 2E-13 82.8 -11.9 181 80-279 32-217 (239)
123 2ft3_A Biglycan; proteoglycan, 98.0 5.5E-08 1.9E-12 81.1 -6.7 182 79-277 123-330 (332)
124 2wfh_A SLIT homolog 2 protein 98.0 4.7E-07 1.6E-11 69.4 -1.2 96 155-257 51-146 (193)
125 3g06_A SSPH2 (leucine-rich rep 98.0 6.1E-06 2.1E-10 74.5 5.6 86 157-259 220-305 (622)
126 2v9t_B SLIT homolog 2 protein 98.0 1.5E-07 5.2E-12 73.7 -4.3 131 131-276 31-161 (220)
127 2xot_A Amphoterin-induced prot 98.0 1.3E-07 4.4E-12 79.9 -5.3 166 80-258 40-210 (361)
128 2xot_A Amphoterin-induced prot 97.9 2.4E-07 8.4E-12 78.1 -4.3 144 104-258 38-183 (361)
129 3g06_A SSPH2 (leucine-rich rep 97.9 6.2E-06 2.1E-10 74.5 4.5 77 183-279 220-296 (622)
130 3j0a_A TOLL-like receptor 5; m 97.9 8.4E-08 2.9E-12 90.0 -8.0 160 103-278 22-185 (844)
131 1w8a_A SLIT protein; signaling 97.9 3.2E-07 1.1E-11 70.3 -3.9 37 210-248 101-137 (192)
132 1dce_A Protein (RAB geranylger 97.9 2E-06 6.8E-11 76.9 0.6 104 132-248 441-544 (567)
133 1dce_A Protein (RAB geranylger 97.9 1.6E-06 5.5E-11 77.5 -0.5 81 131-221 462-543 (567)
134 2o6r_A Variable lymphocyte rec 97.8 1.8E-06 6.1E-11 65.0 -1.1 88 156-250 50-137 (177)
135 4b8c_D Glucose-repressible alc 97.8 2.5E-06 8.6E-11 78.6 -1.0 111 128-252 220-330 (727)
136 3l2o_B F-box only protein 4; s 97.7 1.2E-05 3.9E-10 64.6 2.3 38 42-79 4-41 (312)
137 1jl5_A Outer protein YOPM; leu 97.7 1.3E-05 4.4E-10 69.7 2.6 13 235-247 235-247 (454)
138 3cvr_A Invasion plasmid antige 97.7 6.5E-06 2.2E-10 73.5 0.5 41 214-258 210-250 (571)
139 2e31_A FBS1, F-box only protei 97.7 3.1E-05 1.1E-09 62.6 4.1 40 40-79 48-88 (297)
140 3rw6_A Nuclear RNA export fact 97.7 7.3E-05 2.5E-09 59.9 6.1 83 155-243 167-257 (267)
141 1jl5_A Outer protein YOPM; leu 97.6 2E-05 6.7E-10 68.6 2.0 75 132-221 173-247 (454)
142 3cvr_A Invasion plasmid antige 97.5 1.2E-05 4.1E-10 71.8 0.1 161 79-279 80-242 (571)
143 4b8c_D Glucose-repressible alc 97.5 1.7E-05 5.9E-10 73.0 -0.1 110 153-279 219-328 (727)
144 3rw6_A Nuclear RNA export fact 97.4 0.00024 8.2E-09 56.9 6.4 89 125-219 163-259 (267)
145 2o6r_A Variable lymphocyte rec 97.4 1.3E-05 4.4E-10 60.2 -1.3 109 157-278 27-135 (177)
146 2wfh_A SLIT homolog 2 protein 97.4 1.3E-05 4.3E-10 61.3 -1.5 105 158-276 31-135 (193)
147 1w8a_A SLIT protein; signaling 97.4 4.2E-06 1.4E-10 63.9 -4.5 108 158-277 29-136 (192)
148 3v7d_B Cell division control p 97.3 0.0001 3.5E-09 63.7 2.6 41 39-79 11-51 (464)
149 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00047 1.6E-08 59.3 4.6 40 39-78 15-54 (445)
150 3g39_A Variable lymphocyte rec 97.0 7.1E-05 2.4E-09 55.8 -1.2 84 158-248 30-113 (170)
151 2r9u_A Variable lymphocyte rec 96.9 7.8E-05 2.7E-09 55.9 -1.2 86 158-250 33-118 (174)
152 3sb4_A Hypothetical leucine ri 96.9 0.00013 4.6E-09 60.4 -0.2 124 132-272 202-326 (329)
153 1p22_A F-BOX/WD-repeat protein 96.8 0.00025 8.7E-09 60.8 1.0 39 40-78 8-50 (435)
154 2r9u_A Variable lymphocyte rec 96.0 0.00068 2.3E-08 50.6 -1.1 84 132-222 33-116 (174)
155 3g39_A Variable lymphocyte rec 96.0 0.00073 2.5E-08 50.2 -1.1 62 156-222 52-113 (170)
156 4ay9_X Follicle-stimulating ho 95.8 7.7E-06 2.6E-10 68.6 -14.0 62 184-251 154-215 (350)
157 2ifg_A High affinity nerve gro 95.8 0.0011 3.7E-08 55.2 -0.9 14 239-252 105-118 (347)
158 3sb4_A Hypothetical leucine ri 95.6 0.003 1E-07 52.2 1.2 104 157-275 201-305 (329)
159 4fdw_A Leucine rich hypothetic 94.3 0.00091 3.1E-08 57.1 -5.7 55 209-274 269-330 (401)
160 4ay9_X Follicle-stimulating ho 94.3 0.0001 3.4E-09 61.7 -11.6 184 80-279 31-214 (350)
161 4fdw_A Leucine rich hypothetic 94.2 0.0016 5.4E-08 55.5 -4.5 11 131-141 225-235 (401)
162 1fs1_A SKP2 F-BOX, cyclin A/CD 93.6 0.0042 1.4E-07 36.2 -2.1 30 6-35 10-39 (53)
163 2ifg_A High affinity nerve gro 92.5 0.025 8.5E-07 46.8 0.2 38 209-248 54-91 (347)
164 4gt6_A Cell surface protein; l 90.2 0.16 5.3E-06 42.9 2.8 103 129-247 262-367 (394)
165 4gt6_A Cell surface protein; l 89.9 0.053 1.8E-06 45.8 -0.3 12 234-245 331-342 (394)
166 4fs7_A Uncharacterized protein 82.1 0.13 4.5E-06 43.4 -1.9 98 155-272 294-393 (394)
167 4fs7_A Uncharacterized protein 77.7 0.17 5.8E-06 42.7 -2.7 98 129-242 294-393 (394)
168 4h09_A Hypothetical leucine ri 77.1 0.35 1.2E-05 40.3 -0.9 81 155-246 260-342 (379)
169 3rfe_A Platelet glycoprotein I 74.3 1.2 4.2E-05 30.9 1.5 21 235-255 53-73 (130)
170 4h09_A Hypothetical leucine ri 74.2 0.19 6.5E-06 42.0 -3.3 102 155-274 237-340 (379)
171 2e31_A FBS1, F-box only protei 58.9 2.5 8.6E-05 34.0 0.6 31 6-36 52-83 (297)
172 3v7d_B Cell division control p 53.3 1.8 6.3E-05 36.6 -1.2 30 7-36 17-46 (464)
173 3l2o_B F-box only protein 4; s 50.7 2.1 7.2E-05 34.5 -1.1 30 5-34 5-34 (312)
174 2ovr_B FBW7, F-BOX/WD repeat p 37.5 5.6 0.00019 33.4 -0.6 28 7-34 21-48 (445)
175 1p22_A F-BOX/WD-repeat protein 26.1 4.5 0.00015 34.0 -3.2 29 7-35 13-45 (435)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.96 E-value=8.4e-27 Score=196.19 Aligned_cols=227 Identities=28% Similarity=0.424 Sum_probs=138.5
Q ss_pred CCCCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhc--CCCcEEEccCCCCcchHHHHHH-----------------
Q 023680 40 ITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC--LGLTHLSLSWCKNNMNNLVLSL----------------- 100 (279)
Q Consensus 40 ~~~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~--~~l~~l~l~~~~~~~~~~~~~l----------------- 100 (279)
...|.+||+|++.+||+||+.+++.+++.|||+|+.+.. ..|+++++++.... +..+..+
T Consensus 6 ~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~-~~~~~~~~~~~l~~L~l~~n~l~~ 84 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLH-PDVTGRLLSQGVIAFRCPRSFMDQ 84 (336)
T ss_dssp -CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCC-HHHHHHHHHTTCSEEECTTCEECS
T ss_pred cCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCC-HHHHHhhhhccceEEEcCCccccc
Confidence 467999999999999999999999999999999999874 23677776654322 1222211
Q ss_pred ----cccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHH
Q 023680 101 ----APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHAL 176 (279)
Q Consensus 101 ----~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~ 176 (279)
...+++|++|+++ .+ .+++..+......+++|++|+++++ .+++.....+.. +++|++|++++|..+++.++
T Consensus 85 ~~~~~~~~~~L~~L~L~-~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l 160 (336)
T 2ast_B 85 PLAEHFSPFRVQHMDLS-NS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFAL 160 (336)
T ss_dssp CCCSCCCCBCCCEEECT-TC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHH
T ss_pred cchhhccCCCCCEEEcc-CC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHH
Confidence 1123556666666 22 3555545555555666666666664 455555554443 56666666666545565555
Q ss_pred HHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCC-CCCeEeccCCC-CCCHHHHHHHHhcCCCCCEEeccCCCCCChHH
Q 023680 177 AYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN-QLQSLNLGWCE-DVGDVGVMNLAYGCPDLRSLDLCGCVCITGIS 254 (279)
Q Consensus 177 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~ 254 (279)
..+...+++|++|++++|.. +++.++......++ +|++|++++|. .+++.++..++.++++|++|++++|..+++..
T Consensus 161 ~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 239 (336)
T 2ast_B 161 QTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 239 (336)
T ss_dssp HHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG
T ss_pred HHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHH
Confidence 55555666666666666522 55555555445566 66666666654 45655555555566666666666665555555
Q ss_pred HHHHhhccccCcccccccccccc
Q 023680 255 SADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 255 ~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
+..+ .++++|+.+++.+|
T Consensus 240 ~~~l-----~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 240 FQEF-----FQLNYLQHLSLSRC 257 (336)
T ss_dssp GGGG-----GGCTTCCEEECTTC
T ss_pred HHHH-----hCCCCCCEeeCCCC
Confidence 5433 33455555555554
No 2
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=9.2e-25 Score=197.12 Aligned_cols=225 Identities=23% Similarity=0.334 Sum_probs=169.5
Q ss_pred CCCCCCCCHHHHHHHcccCC-hhHHHHHHhcChhHHHhhcCCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCC
Q 023680 40 ITEWKDIPMELLLRILSLVD-EPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQ 118 (279)
Q Consensus 40 ~~~~~~Lp~~il~~I~~~L~-~~~l~~~~~vc~~w~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~ 118 (279)
.+.|++||+|++.+||+||+ .+++.+++.|||+|+++..+.+.++++..+..... ..+...+++|++|.+. .+..
T Consensus 3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~-~~~~ 78 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSP---ATVIRRFPKVRSVELK-GKPH 78 (594)
T ss_dssp -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCH---HHHHHHCTTCCEEEEE-CSCG
T ss_pred ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCH---HHHHhhCCCceEEecc-CCCc
Confidence 36799999999999999998 99999999999999998766778888877655443 2345678899999998 5543
Q ss_pred CC-------------HHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCC
Q 023680 119 LE-------------DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 185 (279)
Q Consensus 119 ~~-------------~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~ 185 (279)
++ ..++..+...+++|++|+++++ .+++..+..+.+.+++|++|++.+|..+++.++..+..++++
T Consensus 79 ~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 157 (594)
T 2p1m_B 79 FADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN 157 (594)
T ss_dssp GGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTT
T ss_pred hhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCc-EEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCC
Confidence 32 2345667778999999999985 688888888887889999999998877888888888888999
Q ss_pred CcEEEcCCCCCCCCHHH---HHHHHhcCCCCCeEeccCCC-CCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhc
Q 023680 186 LKILNLCGCVKAATDYA---LQAIGRNCNQLQSLNLGWCE-DVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIR 261 (279)
Q Consensus 186 L~~L~L~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~ 261 (279)
|++|++++|. +++.+ +..+...+++|++|++++|. .+++..+..++.++++|++|++++|..+++ +..+
T Consensus 158 L~~L~L~~~~--i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~--- 230 (594)
T 2p1m_B 158 LKELDLRESD--VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATL--- 230 (594)
T ss_dssp CCEEECTTCE--EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHH---
T ss_pred CCEEeCcCCc--cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHH---
Confidence 9999999876 44333 44445567889999998875 578888888888889999999998854433 4444
Q ss_pred cccCcccccccccccc
Q 023680 262 PSRNCCVVKRECSIGC 277 (279)
Q Consensus 262 ~~~~c~~~~~~~~~~~ 277 (279)
..+|++++.+.+.+|
T Consensus 231 -~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 231 -LQRAPQLEELGTGGY 245 (594)
T ss_dssp -HHHCTTCSEEECSBC
T ss_pred -HhcCCcceEcccccc
Confidence 456666666655444
No 3
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.9e-23 Score=175.69 Aligned_cols=262 Identities=20% Similarity=0.200 Sum_probs=188.4
Q ss_pred ccCCChHHHHHHHHHHHHhcccccCCCCCccCCC--CCCCCCC-------CCHHHHHHHc-ccCChhHHHHHHhcChhHH
Q 023680 5 ATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGV--VITEWKD-------IPMELLLRIL-SLVDEPTVIVASGVCSGWR 74 (279)
Q Consensus 5 ~~~l~~e~l~~if~~l~~~~~~~~~~~~~~~~~~--~~~~~~~-------Lp~~il~~I~-~~L~~~~l~~~~~vc~~w~ 74 (279)
+..||+|++.+||+++...+....+.+|+.+... +...|.. +.++.+...+ ..+...++.... +...+.
T Consensus 9 ~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~-l~~~~~ 87 (336)
T 2ast_B 9 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSF-MDQPLA 87 (336)
T ss_dssp SSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHHHTTCSEEECTTCE-ECSCCC
T ss_pred hhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhhhccceEEEcCCcc-ccccch
Confidence 3489999999999999999998888888744332 1233442 2333333221 111111100000 000000
Q ss_pred -HhhcCCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHH
Q 023680 75 -DAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL 153 (279)
Q Consensus 75 -~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l 153 (279)
....+++++++++++. .....+......+++|++|+++ .+ .+++.....+.. +++|++|+++++..+++.++..+
T Consensus 88 ~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~-~~-~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~ 163 (336)
T 2ast_B 88 EHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLE-GL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTL 163 (336)
T ss_dssp SCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECT-TC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHH
T ss_pred hhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCc-Cc-ccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHHHHH
Confidence 0113568888888765 3444455666788999999998 44 688777776665 89999999999768888888888
Q ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHcCC-CCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHH
Q 023680 154 AHGCPNLTRLNISGCTSFSDHALAYLCGFCR-KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNL 232 (279)
Q Consensus 154 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l 232 (279)
...+++|++|++++|..+++.++......++ +|++|+++++...+++..+......+++|++|++++|..+++..+..+
T Consensus 164 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 164 LSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp HHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred HhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 8889999999999876788888888888899 999999999852277788877777799999999999876777776655
Q ss_pred HhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 233 AYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 233 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
..+++|++|++++|..+++.++..+ .+|+.|+.+++.||
T Consensus 244 -~~l~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 244 -FQLNYLQHLSLSRCYDIIPETLLEL-----GEIPTLKTLQVFGI 282 (336)
T ss_dssp -GGCTTCCEEECTTCTTCCGGGGGGG-----GGCTTCCEEECTTS
T ss_pred -hCCCCCCEeeCCCCCCCCHHHHHHH-----hcCCCCCEEeccCc
Confidence 5679999999999987888877555 56889999998887
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=2.2e-22 Score=181.49 Aligned_cols=199 Identities=21% Similarity=0.340 Sum_probs=127.4
Q ss_pred CCCCCHHHHHHHcccC-ChhHHHHHHhcChhHHHhhcCCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCC---
Q 023680 43 WKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQ--- 118 (279)
Q Consensus 43 ~~~Lp~~il~~I~~~L-~~~~l~~~~~vc~~w~~~~~~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~--- 118 (279)
...||+|++.+||+|| +.+++.+++.|||+|+.+..+....+.+..+.... ...+...+++|++|+++ ++..
T Consensus 13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~-~~~~~~~ 88 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTAT---PDRLSRRFPNLRSLKLK-GKPRAAM 88 (592)
T ss_dssp CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSC---HHHHHHHCTTCSEEEEE-CSCGGGG
T ss_pred cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccC---hHHHHHhCCCCeEEEec-CCcchhh
Confidence 3479999999999999 89999999999999998865555555554432221 23344556667777775 3322
Q ss_pred ----------CCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC-CCEEEecCCCCCCHHHHHHHHHcCCCCc
Q 023680 119 ----------LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN-LTRLNISGCTSFSDHALAYLCGFCRKLK 187 (279)
Q Consensus 119 ----------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~-L~~L~L~~~~~~~~~~~~~l~~~~~~L~ 187 (279)
.....+..+...+++|++|+|+++ .+++..+..+...+++ |++|++.+|.+++..++..+...|++|+
T Consensus 89 ~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~ 167 (592)
T 3ogk_B 89 FNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIK 167 (592)
T ss_dssp GTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCS
T ss_pred cccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCC
Confidence 223345555556777777777764 5666666666665555 7777777665566666666666677777
Q ss_pred EEEcCCCCCCCCHHH---HHHHHhcCCCCCeEeccCCCC--CCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 188 ILNLCGCVKAATDYA---LQAIGRNCNQLQSLNLGWCED--VGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 188 ~L~L~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~--i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
+|+|++|. +++.+ +..+...+++|++|+++++.. ++..++..++.+|++|++|++++|.
T Consensus 168 ~L~L~~~~--~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 231 (592)
T 3ogk_B 168 TLLMEESS--FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE 231 (592)
T ss_dssp EEECTTCE--EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred EEECcccc--ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence 77777654 32222 444445566666666665431 3455566666666666666666654
No 5
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=2.4e-18 Score=155.17 Aligned_cols=175 Identities=21% Similarity=0.322 Sum_probs=121.3
Q ss_pred HHHHcccCCCceEEEeeCC----------CCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEec
Q 023680 97 VLSLAPKLTKLQTLVLRQD----------KPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNIS 166 (279)
Q Consensus 97 ~~~l~~~~~~L~~L~l~~~----------~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~ 166 (279)
+..+...+++|++|++. . +..+++..+..+...+++|+.|+++. ..+++..+..+...+++|++|++.
T Consensus 334 l~~~~~~~~~L~~L~L~-~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIE-RGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp HHHHHHHCTTCCEEEEE-CCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred HHHHHHhCCCCCEEEee-cCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHHhhCCCCcEEEEe
Confidence 33444456666666666 4 55666666666666677777777733 566777776666667777777775
Q ss_pred C---CCCCCH----HHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 167 G---CTSFSD----HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 167 ~---~~~~~~----~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
+ |..+++ .++..+...+++|++|++++|...+++..+..+...+++|+.|++++|. +++.++..++.+|++|
T Consensus 412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L 490 (592)
T 3ogk_B 412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNL 490 (592)
T ss_dssp ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTC
T ss_pred ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCccc
Confidence 2 344543 4566666677777777776655446777777777778888888888754 7887877777888888
Q ss_pred CEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 240 RSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 240 ~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
++|++++|. +++.++..+ ...|+.|+.+++.+|.+
T Consensus 491 ~~L~l~~n~-l~~~~~~~~----~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 491 QKLEMRGCC-FSERAIAAA----VTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp CEEEEESCC-CBHHHHHHH----HHHCSSCCEEEEESCBC
T ss_pred CeeeccCCC-CcHHHHHHH----HHhcCccCeeECcCCcC
Confidence 888888887 788777777 34677888888887753
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=8.9e-18 Score=151.43 Aligned_cols=167 Identities=19% Similarity=0.371 Sum_probs=114.0
Q ss_pred cCCCceEEEeeC-------CCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEec-----CCCC
Q 023680 103 KLTKLQTLVLRQ-------DKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNIS-----GCTS 170 (279)
Q Consensus 103 ~~~~L~~L~l~~-------~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~-----~~~~ 170 (279)
.+++|++|++.. .+..+++..+..+...+++|+.|.+.. ..+++..+..+...+|+|++|++. +|..
T Consensus 336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~-~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 414 (594)
T 2p1m_B 336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFC-RQMTNAALITIARNRPNMTRFRLCIIEPKAPDY 414 (594)
T ss_dssp HCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEE-SCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCT
T ss_pred hCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhc-CCcCHHHHHHHHhhCCCcceeEeecccCCCccc
Confidence 455555555520 234455555555555556666664433 456666666666667777777777 4556
Q ss_pred CC----HHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccC
Q 023680 171 FS----DHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCG 246 (279)
Q Consensus 171 ~~----~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~ 246 (279)
++ +.++..+...+++|++|++++ . +++.++..+...+++|+.|++++|. +++.++..++.+|++|++|++++
T Consensus 415 l~~~~~~~~~~~l~~~~~~L~~L~L~~--~-l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~ 490 (594)
T 2p1m_B 415 LTLEPLDIGFGAIVEHCKDLRRLSLSG--L-LTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRD 490 (594)
T ss_dssp TTCCCTHHHHHHHHHHCTTCCEEECCS--S-CCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEES
T ss_pred ccCCchhhHHHHHHhhCCCccEEeecC--c-ccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcC
Confidence 66 667777777777777777765 2 6777777777667888888888765 78888887777788888888888
Q ss_pred CCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 247 CVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 247 c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
|. +++.++..+ ...|+.|+.+++.+|.+
T Consensus 491 n~-~~~~~~~~~----~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 491 CP-FGDKALLAN----ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CS-CCHHHHHHT----GGGGGGSSEEEEESSCC
T ss_pred CC-CcHHHHHHH----HHhCCCCCEEeeeCCCC
Confidence 87 477777766 46678888888888853
No 7
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=4.4e-15 Score=127.00 Aligned_cols=194 Identities=18% Similarity=0.145 Sum_probs=140.4
Q ss_pred cCCCcEEEccCCCCcch--HHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHh---hC---------CCCCeEecCCCC
Q 023680 78 CLGLTHLSLSWCKNNMN--NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SC---------HDLQDLDLSKSF 143 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~---~~---------~~L~~L~L~~~~ 143 (279)
.+.+++|+++++..... ..+......+++|++|+++ ...+++.....+.. .+ ++|+.|+++++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~--~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n- 169 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH--NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN- 169 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECC--SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECc--CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-
Confidence 35688888887653321 1233344578899999998 44566554444433 23 89999999884
Q ss_pred CCCHHHHHH---HHhcCCCCCEEEecCCCCCCHHHHHHHHH----cCCCCcEEEcCCCCCCCCHHHHHHH---HhcCCCC
Q 023680 144 KLSDRSLYA---LAHGCPNLTRLNISGCTSFSDHALAYLCG----FCRKLKILNLCGCVKAATDYALQAI---GRNCNQL 213 (279)
Q Consensus 144 ~~~~~~l~~---l~~~~~~L~~L~L~~~~~~~~~~~~~l~~----~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L 213 (279)
.+++.++.. ....+++|++|++++| .+++.++..+.. .+++|+.|+|+++. +++.+...+ ...+++|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~--l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT--FTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC--CHHHHHHHHHHHGGGCTTC
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC--CCcHHHHHHHHHHccCCCc
Confidence 677666664 3447889999999986 788877666655 67899999999865 776655443 4568899
Q ss_pred CeEeccCCCCCCHHHHHHHHhc-----CCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 214 QSLNLGWCEDVGDVGVMNLAYG-----CPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 214 ~~L~l~~~~~i~~~~l~~l~~~-----~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
++|++++|. +++.+...+... +++|++|++++|. +++.++..+...-..+++.|+.++..+|.+
T Consensus 247 ~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 247 RELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 999999865 888776655442 7899999999986 888888777665557789999999888864
No 8
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.62 E-value=5.4e-14 Score=120.24 Aligned_cols=194 Identities=17% Similarity=0.135 Sum_probs=138.3
Q ss_pred cCCCcEEEccCCCC--cc---hHHH---HHHcccCCCceEEEeeCCCCCCCHHH---HHHHHhhCCCCCeEecCCCCCCC
Q 023680 78 CLGLTHLSLSWCKN--NM---NNLV---LSLAPKLTKLQTLVLRQDKPQLEDNA---VEAIANSCHDLQDLDLSKSFKLS 146 (279)
Q Consensus 78 ~~~l~~l~l~~~~~--~~---~~~~---~~l~~~~~~L~~L~l~~~~~~~~~~~---l~~l~~~~~~L~~L~L~~~~~~~ 146 (279)
.+.+++|+++++.. .. +..+ ......+++|++|+++ ...+++.. +......+++|+.|+|+++ .++
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls--~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~ 135 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS--DNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLG 135 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC--SCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC--CCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCC
Confidence 34589999987632 11 1122 2223468999999999 44565532 3333455999999999995 677
Q ss_pred HHHHHHHHhc---C---------CCCCEEEecCCCCCCHHHHHHH---HHcCCCCcEEEcCCCCCCCCHHHHHHHHh---
Q 023680 147 DRSLYALAHG---C---------PNLTRLNISGCTSFSDHALAYL---CGFCRKLKILNLCGCVKAATDYALQAIGR--- 208 (279)
Q Consensus 147 ~~~l~~l~~~---~---------~~L~~L~L~~~~~~~~~~~~~l---~~~~~~L~~L~L~~~~~~~~~~~~~~l~~--- 208 (279)
+.+...+... + ++|++|+++++ .+++.++..+ ...+++|++|+++++. +++.++..+..
T Consensus 136 ~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~g~~~l~~~~l 212 (386)
T 2ca6_A 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQNG--IRPEGIEHLLLEGL 212 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCCEEECCSSC--CCHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcCEEECcCCC--CCHhHHHHHHHHHh
Confidence 6665555433 3 89999999986 6776666643 3478999999999975 78887665544
Q ss_pred -cCCCCCeEeccCCCCCCHHHHHHH---HhcCCCCCEEeccCCCCCChHHHHHHhhc-cccCcccccccccccccC
Q 023680 209 -NCNQLQSLNLGWCEDVGDVGVMNL---AYGCPDLRSLDLCGCVCITGISSADVIIR-PSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 209 -~~~~L~~L~l~~~~~i~~~~l~~l---~~~~~~L~~L~l~~c~~i~~~~~~~l~~~-~~~~c~~~~~~~~~~~~~ 279 (279)
.+++|+.|++++|. +++.+...+ +..+++|++|++++|. +++.+...+... ...+++.|+.++..+|.|
T Consensus 213 ~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i 286 (386)
T 2ca6_A 213 AYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286 (386)
T ss_dssp GGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred hcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcC
Confidence 78999999999965 877655444 4678999999999987 888887766433 224589999999998865
No 9
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.60 E-value=9e-14 Score=118.09 Aligned_cols=181 Identities=19% Similarity=0.179 Sum_probs=140.0
Q ss_pred hcCCCcEEEccCCCCcchH--HHH-HHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHH
Q 023680 77 ICLGLTHLSLSWCKNNMNN--LVL-SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL 153 (279)
Q Consensus 77 ~~~~l~~l~l~~~~~~~~~--~~~-~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l 153 (279)
+...+++++++++...... .+. .+....++|++|+++ ...+++..+..+...+++|+.|+|+++ .+++.+...+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls--~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA--SCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT--TCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec--CCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 3456999999987643221 222 233345799999999 557899888888888889999999995 8999888777
Q ss_pred Hh----cCCCCCEEEecCCCCCCHHHHHHHH---HcCCCCcEEEcCCCCCCCCHHHHHHHH---hcCCCCCeEeccCCCC
Q 023680 154 AH----GCPNLTRLNISGCTSFSDHALAYLC---GFCRKLKILNLCGCVKAATDYALQAIG---RNCNQLQSLNLGWCED 223 (279)
Q Consensus 154 ~~----~~~~L~~L~L~~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~ 223 (279)
.. .+++|++|+|++| .+++.++..++ ..+++|++|+|+++. +++.+...+. ...++|++|++++|.
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~~~L~~~L~~~~~L~~L~Ls~N~- 222 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGLELLAAQLDRNRQLQELNVAYNG- 222 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHHHHHHHHGGGCSCCCEEECCSSC-
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHHHHHHHHHhcCCCcCeEECCCCC-
Confidence 64 4689999999997 78887776664 467999999999966 8888876553 457899999999965
Q ss_pred CCHHHHHHHHh---cCCCCCEEeccCCCCCChHHHHHHhhccccC
Q 023680 224 VGDVGVMNLAY---GCPDLRSLDLCGCVCITGISSADVIIRPSRN 265 (279)
Q Consensus 224 i~~~~l~~l~~---~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~ 265 (279)
+++.+...++. .+++|++|++++|. +++.++..+.......
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~ 266 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGGAA 266 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC---
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhcCC
Confidence 99988766654 56999999999987 9999999887654433
No 10
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.58 E-value=1.7e-15 Score=113.62 Aligned_cols=92 Identities=14% Similarity=0.243 Sum_probs=46.0
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhc---CCCCCeEeccCCCCCCHHHHHHHHhc
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN---CNQLQSLNLGWCEDVGDVGVMNLAYG 235 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~i~~~~l~~l~~~ 235 (279)
+|++|++++|. +++.++..+. .|++|++|+|++|.. ++|.++..+... +++|++|+|++|..||+.++..+. .
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~-~~~~L~~L~L~~C~~-ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHME-GLQYVEKIRLCKCHY-IEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-H 137 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGT-TCSCCCEEEEESCTT-CCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-G
T ss_pred eEeEEeCcCCC-ccHHHHHHhc-CCCCCCEEEeCCCCc-cCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-c
Confidence 34555555542 4454444442 445555555555543 455555555431 344555555555555555555542 3
Q ss_pred CCCCCEEeccCCCCCChHH
Q 023680 236 CPDLRSLDLCGCVCITGIS 254 (279)
Q Consensus 236 ~~~L~~L~l~~c~~i~~~~ 254 (279)
|++|++|++++|+.||+.+
T Consensus 138 ~~~L~~L~L~~c~~Itd~g 156 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKE 156 (176)
T ss_dssp CTTCCEEEEESCTTCCCHH
T ss_pred CCCCCEEECCCCCCCCchH
Confidence 5555555555555555544
No 11
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=7.1e-14 Score=122.10 Aligned_cols=193 Identities=20% Similarity=0.203 Sum_probs=135.5
Q ss_pred cCCCcEEEccCCCCcch--HHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCC----CCCeEecCCCCCCCHHH--
Q 023680 78 CLGLTHLSLSWCKNNMN--NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCH----DLQDLDLSKSFKLSDRS-- 149 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~----~L~~L~L~~~~~~~~~~-- 149 (279)
.+.+++++++++.-... ..+......+++|++|+++ ...+++.....+...++ +|++|+++++ .+++.+
T Consensus 27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls--~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~ 103 (461)
T 1z7x_W 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR--SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCG 103 (461)
T ss_dssp HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT--TCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHH
T ss_pred cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC--CCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHH
Confidence 45688888888764322 1333444567889999888 45677777777777666 6999999885 677644
Q ss_pred -HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc----CCCCcEEEcCCCCCCCCHHHHHHH---HhcCCCCCeEeccCC
Q 023680 150 -LYALAHGCPNLTRLNISGCTSFSDHALAYLCGF----CRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWC 221 (279)
Q Consensus 150 -l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~ 221 (279)
+......+++|++|+++++ .+++.++..+... .++|++|+++++. +++.+...+ ...+++|++|+++++
T Consensus 104 ~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 104 VLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAASCEPLASVLRAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC--CCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence 4444567788999999886 5777777766653 3579999998875 666554333 345789999999886
Q ss_pred CCCCHHHHHHHHh----cCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 222 EDVGDVGVMNLAY----GCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 222 ~~i~~~~l~~l~~----~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
. +++.+...+.. ..++|++|++++|. +++.++..+.. ....|+.++.++..+|.|
T Consensus 181 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 181 D-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCG-IVASKASLRELALGSNKL 239 (461)
T ss_dssp B-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHH-HHHHCTTCCEEECCSSBC
T ss_pred C-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHH-HHHhCCCccEEeccCCcC
Confidence 5 88777766654 34589999999986 77776555432 245788899888888754
No 12
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.57 E-value=1e-13 Score=121.14 Aligned_cols=166 Identities=16% Similarity=0.225 Sum_probs=91.4
Q ss_pred CCceEEEeeCCCCCCCHHHH---HHHHhhCCCCCeEecCCCCCCCHHHHHHHHh----cCCCCCEEEecCCCCCCHHHH-
Q 023680 105 TKLQTLVLRQDKPQLEDNAV---EAIANSCHDLQDLDLSKSFKLSDRSLYALAH----GCPNLTRLNISGCTSFSDHAL- 176 (279)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l---~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~----~~~~L~~L~L~~~~~~~~~~~- 176 (279)
++|++|+++ .+ .+++... ......+++|++|+++++ .+++.+...+.. ..++|++|++++| .+++.++
T Consensus 142 ~~L~~L~L~-~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 217 (461)
T 1z7x_W 142 CRLEKLQLE-YC-SLSAASCEPLASVLRAKPDFKELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCR 217 (461)
T ss_dssp CCCCEEECT-TS-CCBGGGHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHH
T ss_pred CcceEEECC-CC-CCCHHHHHHHHHHHhhCCCCCEEECcCC-CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHH
Confidence 456666655 22 3443222 222233566666666663 456555555443 2346677777665 4554432
Q ss_pred --HHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHh----cCCCCCeEeccCCCCCCHHHHHHH---HhcCCCCCEEeccCC
Q 023680 177 --AYLCGFCRKLKILNLCGCVKAATDYALQAIGR----NCNQLQSLNLGWCEDVGDVGVMNL---AYGCPDLRSLDLCGC 247 (279)
Q Consensus 177 --~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~i~~~~l~~l---~~~~~~L~~L~l~~c 247 (279)
......+++|++|+++++. +++.++..+.. .+++|++|++++| .+++.++..+ +..+++|++|++++|
T Consensus 218 ~l~~~l~~~~~L~~L~Ls~n~--l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 218 DLCGIVASKASLRELALGSNK--LGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHhCCCccEEeccCCc--CChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 2233356777777777654 56665554432 3567777777775 3666653333 334677777777776
Q ss_pred CCCChHHHHHHhhccccCccccccccccccc
Q 023680 248 VCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 248 ~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
. +++.++..+...-....++++.++..+|.
T Consensus 295 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 295 E-LGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp C-CHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred C-CchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 4 66666666554444444555555555554
No 13
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.56 E-value=3.4e-15 Score=111.95 Aligned_cols=104 Identities=17% Similarity=0.279 Sum_probs=59.3
Q ss_pred CCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc---CCCCcEEEcCCCCCCCCHHHHHHHHhc
Q 023680 133 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF---CRKLKILNLCGCVKAATDYALQAIGRN 209 (279)
Q Consensus 133 ~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~~~~~l~~~ 209 (279)
.|++|++++| .+++.++..+ ..|++|++|+|++|..++|.++..++.. +++|++|+|++|.. ++|.++..+. .
T Consensus 62 ~L~~LDLs~~-~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~-ITD~Gl~~L~-~ 137 (176)
T 3e4g_A 62 KIQAIDATDS-CIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN-VTDKGIIALH-H 137 (176)
T ss_dssp CEEEEEEESC-CCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT-CCHHHHHHGG-G
T ss_pred eEeEEeCcCC-CccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc-CCHHHHHHHh-c
Confidence 4555555554 2555555555 3456666666666656666666666542 35566666666654 6666666654 3
Q ss_pred CCCCCeEeccCCCCCCHHHH--HHHHhcCCCCC
Q 023680 210 CNQLQSLNLGWCEDVGDVGV--MNLAYGCPDLR 240 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l--~~l~~~~~~L~ 240 (279)
+++|++|++++|+.||+.++ ..+-...|+++
T Consensus 138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 56666666666666666542 33334445543
No 14
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.54 E-value=9.2e-14 Score=118.02 Aligned_cols=168 Identities=17% Similarity=0.111 Sum_probs=136.0
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhh----CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANS----CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY 178 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~----~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~ 178 (279)
..++|+.|+++ ...+++.....+... +++|+.|+|+++ .+++.++..+...+++|++|+|++| .+++.++..
T Consensus 70 ~~~~L~~L~Ls--~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~ 145 (372)
T 3un9_A 70 VLSSLRQLNLA--GVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKD 145 (372)
T ss_dssp HHTTCCEEECT--TSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHH
T ss_pred HHhhCCEEEec--CCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHH
Confidence 34789999999 556888766665543 369999999995 8999999999888899999999997 889988877
Q ss_pred HHH----cCCCCcEEEcCCCCCCCCHHHHHHHH---hcCCCCCeEeccCCCCCCHHHHHHHH---hcCCCCCEEeccCCC
Q 023680 179 LCG----FCRKLKILNLCGCVKAATDYALQAIG---RNCNQLQSLNLGWCEDVGDVGVMNLA---YGCPDLRSLDLCGCV 248 (279)
Q Consensus 179 l~~----~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~ 248 (279)
+.. ..++|++|+|++|. +++.+...+. ...++|++|++++|. +++.++..+. ..+++|++|++++|.
T Consensus 146 L~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 146 LRDLLLHDQCQITTLRLSNNP--LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHSTTCCCCEEECCSSC--CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHHhcCCccceeeCCCCC--CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 764 35889999999976 8887776653 468999999999965 8988876554 456899999999986
Q ss_pred CCChHHHHHHhhccccCcccccccccccccC
Q 023680 249 CITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 249 ~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
+++.++..+.. ....++.++.++..+|.|
T Consensus 223 -i~~~g~~~l~~-~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 223 -AGDTAALALAR-AAREHPSLELLHLYFNEL 251 (372)
T ss_dssp -CCHHHHHHHHH-HHHHCSSCCEEECTTSSC
T ss_pred -CCHHHHHHHHH-HHHhCCCCCEEeccCCCC
Confidence 99998877643 345778899999988865
No 15
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=2.6e-12 Score=108.90 Aligned_cols=190 Identities=17% Similarity=0.124 Sum_probs=120.5
Q ss_pred CCcEEEccCCCCcc--hHHHHHHccc-CCCceEEEeeCCCCCCCH---HHHHHHHhhC-CCCCeEecCCCCCCCHHHHHH
Q 023680 80 GLTHLSLSWCKNNM--NNLVLSLAPK-LTKLQTLVLRQDKPQLED---NAVEAIANSC-HDLQDLDLSKSFKLSDRSLYA 152 (279)
Q Consensus 80 ~l~~l~l~~~~~~~--~~~~~~l~~~-~~~L~~L~l~~~~~~~~~---~~l~~l~~~~-~~L~~L~L~~~~~~~~~~l~~ 152 (279)
.+++|+++++.-.. ...+..+... +++|++|+++ .+ .+++ ..+......+ ++|+.|+++++ .+++.....
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLS-GN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSE 128 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECC-SS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECc-CC-cCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHH
Confidence 58888888764322 2223333223 4889999998 33 3443 3333333445 78999999884 566555544
Q ss_pred HHh---c-CCCCCEEEecCCCCCCHHHHHHH---HHcCC-CCcEEEcCCCCCCCCHHHHHH---HHhcC-CCCCeEeccC
Q 023680 153 LAH---G-CPNLTRLNISGCTSFSDHALAYL---CGFCR-KLKILNLCGCVKAATDYALQA---IGRNC-NQLQSLNLGW 220 (279)
Q Consensus 153 l~~---~-~~~L~~L~L~~~~~~~~~~~~~l---~~~~~-~L~~L~L~~~~~~~~~~~~~~---l~~~~-~~L~~L~l~~ 220 (279)
+.. . +++|++|+++++ .+++.+...+ ....+ +|++|+++++. +++.+... ....+ ++|++|++++
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 205 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGNN--LASKNCAELAKFLASIPASVTSLDLSA 205 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeecCCC--CchhhHHHHHHHHHhCCCCCCEEECCC
Confidence 433 3 468999999886 6665444433 23444 89999999875 55444333 33345 4899999988
Q ss_pred CCCCCHHHHHHH---Hhc-CCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 221 CEDVGDVGVMNL---AYG-CPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 221 ~~~i~~~~l~~l---~~~-~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
|. +++.+...+ +.. +++|++|++++|. +++.++..+. .....++.++.++.++|.
T Consensus 206 N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~-~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 206 NL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLK-LLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp SC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHH-HTTTTTTTCSEEEEEHHH
T ss_pred CC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHH-HHHhcCCCccEEEeccCC
Confidence 65 655433322 233 4689999999976 8887776654 345677788888888774
No 16
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.33 E-value=9.7e-11 Score=89.54 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=98.4
Q ss_pred HHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHh---cCCCCCEEEecCCCCCCHHHHHHHHH---cCCCCcEEEcCCCC
Q 023680 122 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCV 195 (279)
Q Consensus 122 ~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~---~~~~L~~L~L~~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~ 195 (279)
..+..+...+++|++|+|+++..++++++..+++ ..++|++|+|+++ .+.+.++..++. ..++|++|+|+++.
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4555666678899999998844888888777654 4678999999986 788888766654 45789999999865
Q ss_pred CCCCHHHHHHHHh---cCCCCCeEec--cCCCCCCHHHHHHHH---hcCCCCCEEeccCCCCCChHH
Q 023680 196 KAATDYALQAIGR---NCNQLQSLNL--GWCEDVGDVGVMNLA---YGCPDLRSLDLCGCVCITGIS 254 (279)
Q Consensus 196 ~~~~~~~~~~l~~---~~~~L~~L~l--~~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~i~~~~ 254 (279)
+++.+...++. ..++|++|++ ++ ..+++.+...+. ..+++|++|++++|. +++.+
T Consensus 105 --i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~ 167 (185)
T 1io0_A 105 --ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL 167 (185)
T ss_dssp --CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred --CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence 88988777643 4678999999 66 458998855444 456899999999986 77665
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.29 E-value=1.7e-11 Score=103.89 Aligned_cols=192 Identities=18% Similarity=0.085 Sum_probs=132.4
Q ss_pred CCcEEEccCCCCcc--hHHHHHHcccCC-CceEEEeeCCCCCCCHH---HHHHHHhhC-CCCCeEecCCCCCCCHH---H
Q 023680 80 GLTHLSLSWCKNNM--NNLVLSLAPKLT-KLQTLVLRQDKPQLEDN---AVEAIANSC-HDLQDLDLSKSFKLSDR---S 149 (279)
Q Consensus 80 ~l~~l~l~~~~~~~--~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~---~l~~l~~~~-~~L~~L~L~~~~~~~~~---~ 149 (279)
.+++|+++++.-.. ...+.......+ +|++|+++ ...+++. .+..+.... ++|+.|+++++ .+++. .
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls--~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~ 99 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS--GNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDE 99 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC--SSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc--CCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHH
Confidence 49999999875322 122223334567 99999999 3355543 333333334 99999999995 55543 4
Q ss_pred HHHHHhcC-CCCCEEEecCCCCCCHHHHHHHHH---c-CCCCcEEEcCCCCCCCCHHHHHHH---HhcCC-CCCeEeccC
Q 023680 150 LYALAHGC-PNLTRLNISGCTSFSDHALAYLCG---F-CRKLKILNLCGCVKAATDYALQAI---GRNCN-QLQSLNLGW 220 (279)
Q Consensus 150 l~~l~~~~-~~L~~L~L~~~~~~~~~~~~~l~~---~-~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~-~L~~L~l~~ 220 (279)
+......+ ++|++|+++++ .+++.+...+.. . +++|++|+++++. +++.+...+ ....+ +|++|++++
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHHHHHHHHhcCCccccEeeecC
Confidence 44444555 89999999997 676665555543 3 4699999999965 676555443 23344 999999999
Q ss_pred CCCCCH---HHHHHHHhcC-CCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 221 CEDVGD---VGVMNLAYGC-PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 221 ~~~i~~---~~l~~l~~~~-~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
|. +++ ..+...+..+ ++|++|++++|. +++.++..+...-...++.++.++..+|.|
T Consensus 177 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 237 (362)
T 3goz_A 177 NN-LASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237 (362)
T ss_dssp SC-GGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCC
T ss_pred CC-CchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 75 544 4444455566 499999999987 888888777555455567999999988864
No 18
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.23 E-value=4.1e-11 Score=101.11 Aligned_cols=171 Identities=13% Similarity=0.066 Sum_probs=112.7
Q ss_pred CCCcEEEccCCCCc-------chHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHH
Q 023680 79 LGLTHLSLSWCKNN-------MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLY 151 (279)
Q Consensus 79 ~~l~~l~l~~~~~~-------~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~ 151 (279)
++++.|.+...... ....+..+...+|+|+.|.++ ++..+.. ..+ ..++|++|+|.. ..++++.+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~-g~~~l~l---~~~--~~~~L~~L~L~~-~~l~~~~l~ 211 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIK-GTNNLSI---GKK--PRPNLKSLEIIS-GGLPDSVVE 211 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEE-CCBTCBC---CSC--BCTTCSEEEEEC-SBCCHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEe-CCCCcee---ccc--cCCCCcEEEEec-CCCChHHHH
Confidence 46777776432110 011234555678889999887 4422211 111 278899999887 468888888
Q ss_pred HHHh-cCCCCCEEEecCCCCC--C---HHHHHHHH--HcCCCCcEEEcCCCCCCCCHHHHHHHHh--cCCCCCeEeccCC
Q 023680 152 ALAH-GCPNLTRLNISGCTSF--S---DHALAYLC--GFCRKLKILNLCGCVKAATDYALQAIGR--NCNQLQSLNLGWC 221 (279)
Q Consensus 152 ~l~~-~~~~L~~L~L~~~~~~--~---~~~~~~l~--~~~~~L~~L~L~~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~ 221 (279)
.+.. .+|+|++|+|+.+... . ...+..+. ..+|+|+.|++.+|. +++.....++. .+|+|++|+++++
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCCC
Confidence 8874 5899999998532110 1 11122222 247899999998866 66666555653 5788999999874
Q ss_pred CCCCHHHHHHHHh---cCCCCCEEeccCCCCCChHHHHHHhh
Q 023680 222 EDVGDVGVMNLAY---GCPDLRSLDLCGCVCITGISSADVII 260 (279)
Q Consensus 222 ~~i~~~~l~~l~~---~~~~L~~L~l~~c~~i~~~~~~~l~~ 260 (279)
.+++.+...++. .+++|+.|++++|. +++.++..+.+
T Consensus 290 -~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~ 329 (362)
T 2ra8_A 290 -VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQK 329 (362)
T ss_dssp -CCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHH
T ss_pred -CCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHH
Confidence 588888777763 46899999999885 89999888865
No 19
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.22 E-value=2.3e-10 Score=87.45 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=102.9
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH---cCCCCcEEEcCCCCCCCCHHHHHHHH---hcCCCCCeEeccC
Q 023680 147 DRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYALQAIG---RNCNQLQSLNLGW 220 (279)
Q Consensus 147 ~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~ 220 (279)
.+.+..+...+++|++|+|+++..+.+.++..++. ..++|++|+|+++. +++++...++ ...++|++|++++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~--i~~~g~~~l~~~L~~n~~L~~L~L~~ 102 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR--SNDPVAFALAEMLKVNNTLKSLNVES 102 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC--CCHHHHHHHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC--CChHHHHHHHHHHHhCCCcCEEECcC
Confidence 45677777889999999999865889988877765 46899999999976 8998877654 3568999999999
Q ss_pred CCCCCHHHHHHHHh---cCCCCCEEec--cCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 221 CEDVGDVGVMNLAY---GCPDLRSLDL--CGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 221 ~~~i~~~~l~~l~~---~~~~L~~L~l--~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
|. |++.+...++. .+++|++|++ ++|. +++.+...+.+ ....++.++.++..+|.|
T Consensus 103 N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~-~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 103 NF-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIAN-MLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHH-HHHHCSSCCEEECCCSSH
T ss_pred Cc-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHH-HHHhCCCcCEEeccCCCC
Confidence 65 99999877765 4579999999 7765 99999877753 456678899998888753
No 20
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.16 E-value=3.4e-11 Score=101.56 Aligned_cols=168 Identities=18% Similarity=0.137 Sum_probs=118.4
Q ss_pred ccCCCceEEEeeCCCCC-------CCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHH
Q 023680 102 PKLTKLQTLVLRQDKPQ-------LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH 174 (279)
Q Consensus 102 ~~~~~L~~L~l~~~~~~-------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~ 174 (279)
..+++|+.|.+. .... +....+..+...+|+|++|.|.++..+.. ..+ ..++|++|.|..| .++..
T Consensus 136 ~~l~~L~~L~l~-~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~~ 208 (362)
T 2ra8_A 136 EKFAHFEGLFWG-DIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPDS 208 (362)
T ss_dssp HHHTTCSEEEEC-CCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCHH
T ss_pred hhcchhhheeec-CcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCChH
Confidence 467899999997 3211 11112456667799999999987532221 111 3789999999976 78888
Q ss_pred HHHHHHH-cCCCCcEEEcCCCCCC-CCHH---HHHHHH--hcCCCCCeEeccCCCCCCHHHHHHHHh--cCCCCCEEecc
Q 023680 175 ALAYLCG-FCRKLKILNLCGCVKA-ATDY---ALQAIG--RNCNQLQSLNLGWCEDVGDVGVMNLAY--GCPDLRSLDLC 245 (279)
Q Consensus 175 ~~~~l~~-~~~~L~~L~L~~~~~~-~~~~---~~~~l~--~~~~~L~~L~l~~~~~i~~~~l~~l~~--~~~~L~~L~l~ 245 (279)
++..++. .+|+|++|+|+...+. ..+. .+..+. ..+|+|++|++++|. +++.+...++. .+|+|++|+++
T Consensus 209 ~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs 287 (362)
T 2ra8_A 209 VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDIS 287 (362)
T ss_dssp HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECC
T ss_pred HHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECC
Confidence 8888875 6899999999642110 1111 122221 258999999999865 77766666654 47899999999
Q ss_pred CCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 246 GCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 246 ~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
+|. +++.+...+.. +..+++.|+.+++++|+|
T Consensus 288 ~n~-L~d~G~~~L~~-~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 288 AGV-LTDEGARLLLD-HVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp SSC-CBHHHHHHHHT-THHHHTTCSEEECCSBBC
T ss_pred CCC-CChHHHHHHHh-hcccCCcceEEECCCCcC
Confidence 875 99999988754 335788999999999875
No 21
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.09 E-value=2.7e-11 Score=93.60 Aligned_cols=148 Identities=19% Similarity=0.182 Sum_probs=76.0
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.+++++++++....-. -...+++|++|+++ .+ .+++. .. ...+++|+.|+++++ .+++.....+ ..+++
T Consensus 45 ~L~~L~l~~n~i~~l~----~l~~l~~L~~L~l~-~n-~~~~~--~~-l~~l~~L~~L~l~~n-~l~~~~~~~l-~~l~~ 113 (197)
T 4ezg_A 45 SLTYITLANINVTDLT----GIEYAHNIKDLTIN-NI-HATNY--NP-ISGLSNLERLRIMGK-DVTSDKIPNL-SGLTS 113 (197)
T ss_dssp TCCEEEEESSCCSCCT----TGGGCTTCSEEEEE-SC-CCSCC--GG-GTTCTTCCEEEEECT-TCBGGGSCCC-TTCTT
T ss_pred CccEEeccCCCccChH----HHhcCCCCCEEEcc-CC-CCCcc--hh-hhcCCCCCEEEeECC-ccCcccChhh-cCCCC
Confidence 3667776654332111 13356677777777 34 33221 11 223667777777663 4443322222 34566
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
|++|+++++ .+++.....+. .+++|++|+++++.. +++. .. ...+++|++|++++|. +++. . .+..+++|
T Consensus 114 L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~-i~~~--~~-l~~l~~L~~L~l~~n~-i~~~--~-~l~~l~~L 183 (197)
T 4ezg_A 114 LTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGA-ITDI--MP-LKTLPELKSLNIQFDG-VHDY--R-GIEDFPKL 183 (197)
T ss_dssp CCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTB-CCCC--GG-GGGCSSCCEEECTTBC-CCCC--T-TGGGCSSC
T ss_pred CCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCC-cccc--Hh-hcCCCCCCEEECCCCC-CcCh--H-HhccCCCC
Confidence 777777664 45543333333 566777777766541 2222 12 2346667777776654 4331 1 23456677
Q ss_pred CEEeccCCC
Q 023680 240 RSLDLCGCV 248 (279)
Q Consensus 240 ~~L~l~~c~ 248 (279)
++|+++++.
T Consensus 184 ~~L~l~~N~ 192 (197)
T 4ezg_A 184 NQLYAFSQT 192 (197)
T ss_dssp CEEEECBC-
T ss_pred CEEEeeCcc
Confidence 777776654
No 22
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=4.6e-10 Score=94.26 Aligned_cols=128 Identities=25% Similarity=0.222 Sum_probs=75.6
Q ss_pred hhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHh
Q 023680 129 NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR 208 (279)
Q Consensus 129 ~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~ 208 (279)
..+++|+.|+++++ .+++... ...+++|++|+++++ .++.. .. ...+++|++|+++++. +++. . ...
T Consensus 218 ~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~l~~n~--l~~~--~-~~~ 284 (347)
T 4fmz_A 218 ANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTN-QISDI--NA-VKDLTKLKMLNVGSNQ--ISDI--S-VLN 284 (347)
T ss_dssp GGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSC--CCCC--G-GGG
T ss_pred hcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCC-ccCCC--hh-HhcCCCcCEEEccCCc--cCCC--h-hhc
Confidence 34666777777664 3332211 445677777777765 33331 11 2356777777777764 4432 1 234
Q ss_pred cCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 209 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
.+++|+.|++++|. ++......+ .++++|++|++++|. +++... ...++.++.+++.+|.|
T Consensus 285 ~l~~L~~L~L~~n~-l~~~~~~~l-~~l~~L~~L~L~~n~-l~~~~~-------~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 285 NLSQLNSLFLNNNQ-LGNEDMEVI-GGLTNLTTLFLSQNH-ITDIRP-------LASLSKMDSADFANQVI 345 (347)
T ss_dssp GCTTCSEEECCSSC-CCGGGHHHH-HTCTTCSEEECCSSS-CCCCGG-------GGGCTTCSEESSSCC--
T ss_pred CCCCCCEEECcCCc-CCCcChhHh-hccccCCEEEccCCc-cccccC-------hhhhhccceeehhhhcc
Confidence 57788888887764 555444333 567888888888876 443221 46678888888888764
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.09 E-value=4.3e-10 Score=94.43 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=72.2
Q ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHH
Q 023680 154 AHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLA 233 (279)
Q Consensus 154 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~ 233 (279)
...+++|++|+++++ .++.... ...+++|++|+++++. +++. .. ...+++|+.|++++|. +++. ..+
T Consensus 217 ~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~--l~~~--~~-~~~l~~L~~L~l~~n~-l~~~---~~~ 283 (347)
T 4fmz_A 217 VANMTRLNSLKIGNN-KITDLSP---LANLSQLTWLEIGTNQ--ISDI--NA-VKDLTKLKMLNVGSNQ-ISDI---SVL 283 (347)
T ss_dssp GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC--CCCC--GG-GTTCTTCCEEECCSSC-CCCC---GGG
T ss_pred hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCCEEECCCCc--cCCC--hh-HhcCCCcCEEEccCCc-cCCC---hhh
Confidence 345677888888775 3333211 3467888888888765 4432 22 3457888888888864 5442 224
Q ss_pred hcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 234 YGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 234 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
..+++|++|++++|. +++.....+ ..++.++.+++.+|.+
T Consensus 284 ~~l~~L~~L~L~~n~-l~~~~~~~l-----~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 284 NNLSQLNSLFLNNNQ-LGNEDMEVI-----GGLTNLTTLFLSQNHI 323 (347)
T ss_dssp GGCTTCSEEECCSSC-CCGGGHHHH-----HTCTTCSEEECCSSSC
T ss_pred cCCCCCCEEECcCCc-CCCcChhHh-----hccccCCEEEccCCcc
Confidence 677899999999986 776666555 5678888888888864
No 24
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.01 E-value=4.2e-10 Score=93.11 Aligned_cols=167 Identities=19% Similarity=0.171 Sum_probs=105.1
Q ss_pred cCCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 023680 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 157 (279)
.+.+++|+++++....... ...+++|++|+++ .+ .++.. .. ...+++|+.|+++++ .+++. .. ...+
T Consensus 62 l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~-~n-~l~~~--~~-~~~l~~L~~L~l~~n-~l~~~--~~-l~~l 128 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP----LKNLTKITELELS-GN-PLKNV--SA-IAGLQSIKTLDLTST-QITDV--TP-LAGL 128 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECC-SC-CCSCC--GG-GTTCTTCCEEECTTS-CCCCC--GG-GTTC
T ss_pred cCCCCEEEccCCcCCCChh----HccCCCCCEEEcc-CC-cCCCc--hh-hcCCCCCCEEECCCC-CCCCc--hh-hcCC
Confidence 3457888887764332111 4467888888888 33 33321 12 334788888888875 44432 12 4567
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
++|++|+++++ .++... . ...+++|+.|+++++. +++... ...+++|+.|+++++. +++.. . +..++
T Consensus 129 ~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~--l~~~~~---l~~l~~L~~L~l~~n~-l~~~~--~-l~~l~ 195 (308)
T 1h6u_A 129 SNLQVLYLDLN-QITNIS--P-LAGLTNLQYLSIGNAQ--VSDLTP---LANLSKLTTLKADDNK-ISDIS--P-LASLP 195 (308)
T ss_dssp TTCCEEECCSS-CCCCCG--G-GGGCTTCCEEECCSSC--CCCCGG---GTTCTTCCEEECCSSC-CCCCG--G-GGGCT
T ss_pred CCCCEEECCCC-ccCcCc--c-ccCCCCccEEEccCCc--CCCChh---hcCCCCCCEEECCCCc-cCcCh--h-hcCCC
Confidence 88888888876 443321 1 3467888888888865 443221 3467889999988864 44322 2 46778
Q ss_pred CCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 238 DLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 238 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
+|++|++++|. +++.. +...++.++.++..++.
T Consensus 196 ~L~~L~L~~N~-l~~~~-------~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 196 NLIEVHLKNNQ-ISDVS-------PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TCCEEECTTSC-CCBCG-------GGTTCTTCCEEEEEEEE
T ss_pred CCCEEEccCCc-cCccc-------cccCCCCCCEEEccCCe
Confidence 89999999886 54433 24778888888777664
No 25
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.98 E-value=1.3e-10 Score=85.51 Aligned_cols=107 Identities=27% Similarity=0.261 Sum_probs=52.3
Q ss_pred hCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhc
Q 023680 130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN 209 (279)
Q Consensus 130 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 209 (279)
.+++|+.|+++++ .++.. .....+++|++|+++++ .++.. +......+++|++|+++++. +++.........
T Consensus 40 ~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n-~i~~~-~~~~~~~l~~L~~L~ls~N~--i~~~~~~~~~~~ 111 (149)
T 2je0_A 40 EFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDN-RVSGG-LEVLAEKCPNLTHLNLSGNK--IKDLSTIEPLKK 111 (149)
T ss_dssp TCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSS-CCCSC-THHHHHHCTTCCEEECTTSC--CCSHHHHGGGGG
T ss_pred hcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCC-cccch-HHHHhhhCCCCCEEECCCCc--CCChHHHHHHhh
Confidence 3556666666653 33322 22334566666666654 33321 33333446666666666644 444322122234
Q ss_pred CCCCCeEeccCCCCCCHHHH--HHHHhcCCCCCEEecc
Q 023680 210 CNQLQSLNLGWCEDVGDVGV--MNLAYGCPDLRSLDLC 245 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l--~~l~~~~~~L~~L~l~ 245 (279)
+++|++|+++++. ++.... ...+..+++|++|+++
T Consensus 112 l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 112 LENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence 6666666666643 332211 1234555666666654
No 26
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.97 E-value=1e-10 Score=86.04 Aligned_cols=133 Identities=20% Similarity=0.217 Sum_probs=91.7
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
.++|+.|+++++ .+++..+......+++|++|+++++ .++.. .....+++|++|+++++. ++.. +......+
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~--i~~~-~~~~~~~l 87 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR--VSGG-LEVLAEKC 87 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC--CCSC-THHHHHHC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc--ccch-HHHHhhhC
Confidence 467899999885 5553344444567899999999986 55543 223467999999999976 5543 34445568
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccc
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSI 275 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~ 275 (279)
++|++|+++++. +++......+..+++|++|++++|. +++... +.......+++++.++..
T Consensus 88 ~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~--~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 88 PNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE-VTNLND--YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG-GGGSTT--HHHHHHHHCTTCCEETTB
T ss_pred CCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc-ccchHH--HHHHHHHHCCCcccccCC
Confidence 999999999965 7764433445788999999999986 554332 001124667777776653
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.94 E-value=3.7e-11 Score=90.31 Aligned_cols=134 Identities=25% Similarity=0.271 Sum_probs=81.5
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (279)
..++|++|+++ .+ .+++..+......+++|+.|+++++ .++.. .....+++|++|+++++ .++.. +..+...
T Consensus 22 ~~~~L~~L~l~-~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~ 93 (168)
T 2ell_A 22 TPAAVRELVLD-NC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEK 93 (168)
T ss_dssp CTTSCSEEECC-SC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHH
T ss_pred CcccCCEEECC-CC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhh
Confidence 44778888888 33 3432222222345778888888875 34433 33445678888888875 44432 3444556
Q ss_pred CCCCcEEEcCCCCCCCCHHH-HHHHHhcCCCCCeEeccCCCCCCHHH--HHHHHhcCCCCCEEeccCCC
Q 023680 183 CRKLKILNLCGCVKAATDYA-LQAIGRNCNQLQSLNLGWCEDVGDVG--VMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~~--l~~l~~~~~~L~~L~l~~c~ 248 (279)
+++|++|+++++. +++.. +..+ ..+++|++|+++++. ++... ....+..+++|++|++++|.
T Consensus 94 l~~L~~L~Ls~N~--l~~~~~~~~l-~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 94 LPNLTHLNLSGNK--LKDISTLEPL-KKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CTTCCEEECBSSS--CCSSGGGGGG-SSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred CCCCCEEeccCCc--cCcchhHHHH-hcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 7888888888865 44422 2223 357888888888764 33321 12345677888888888875
No 28
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.92 E-value=1.2e-09 Score=90.25 Aligned_cols=167 Identities=21% Similarity=0.166 Sum_probs=117.1
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
..+++++++++..... .. ...+++|++|+++ .+ .+++.. . ...+++|+.|+++++ .++.- . -...++
T Consensus 41 ~~L~~L~l~~~~i~~l---~~-~~~l~~L~~L~L~-~n-~i~~~~--~-~~~l~~L~~L~L~~n-~l~~~--~-~~~~l~ 107 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTI---EG-VQYLNNLIGLELK-DN-QITDLA--P-LKNLTKITELELSGN-PLKNV--S-AIAGLQ 107 (308)
T ss_dssp HTCCEEECTTSCCCCC---TT-GGGCTTCCEEECC-SS-CCCCCG--G-GTTCCSCCEEECCSC-CCSCC--G-GGTTCT
T ss_pred CCcCEEEeeCCCccCc---hh-hhccCCCCEEEcc-CC-cCCCCh--h-HccCCCCCEEEccCC-cCCCc--h-hhcCCC
Confidence 4589999987754331 12 3468999999999 44 443321 1 455899999999985 44432 2 245689
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|++|+++++ .++. +.. ...+++|++|+++++. +++... ...+++|+.|++++|. +++ +.. +..+++
T Consensus 108 ~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n~--l~~~~~---l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~ 174 (308)
T 1h6u_A 108 SIKTLDLTST-QITD--VTP-LAGLSNLQVLYLDLNQ--ITNISP---LAGLTNLQYLSIGNAQ-VSD--LTP-LANLSK 174 (308)
T ss_dssp TCCEEECTTS-CCCC--CGG-GTTCTTCCEEECCSSC--CCCCGG---GGGCTTCCEEECCSSC-CCC--CGG-GTTCTT
T ss_pred CCCEEECCCC-CCCC--chh-hcCCCCCCEEECCCCc--cCcCcc---ccCCCCccEEEccCCc-CCC--Chh-hcCCCC
Confidence 9999999986 4544 222 3478999999999976 443322 4568999999999975 554 222 577899
Q ss_pred CCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 239 LRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 239 L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
|++|++++|. +++... ...++.++.++..+|.+
T Consensus 175 L~~L~l~~n~-l~~~~~-------l~~l~~L~~L~L~~N~l 207 (308)
T 1h6u_A 175 LTTLKADDNK-ISDISP-------LASLPNLIEVHLKNNQI 207 (308)
T ss_dssp CCEEECCSSC-CCCCGG-------GGGCTTCCEEECTTSCC
T ss_pred CCEEECCCCc-cCcChh-------hcCCCCCCEEEccCCcc
Confidence 9999999987 554321 46788999999888864
No 29
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.92 E-value=1.8e-09 Score=88.48 Aligned_cols=166 Identities=18% Similarity=0.117 Sum_probs=109.5
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
..++.++++++..... .. ...+++|++|+++ .+ .+++.. . ...+++|+.|+++++ .+++ +.. ...++
T Consensus 46 ~~L~~L~l~~~~i~~~---~~-~~~l~~L~~L~L~-~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~ 112 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV---QG-IQYLPNVTKLFLN-GN-KLTDIK--P-LANLKNLGWLFLDEN-KVKD--LSS-LKDLK 112 (291)
T ss_dssp HTCCEEECTTSCCCCC---TT-GGGCTTCCEEECC-SS-CCCCCG--G-GTTCTTCCEEECCSS-CCCC--GGG-GTTCT
T ss_pred CcccEEEccCCCcccC---hh-HhcCCCCCEEEcc-CC-ccCCCc--c-cccCCCCCEEECCCC-cCCC--Chh-hccCC
Confidence 3478888887653322 12 3468899999998 33 333211 1 445889999999885 4443 222 45678
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|++|+++++ .+++. .. ...+++|+.|+++++. +++. .. ...+++|++|++++|. +++.. . +..+++
T Consensus 113 ~L~~L~L~~n-~i~~~--~~-l~~l~~L~~L~l~~n~--l~~~--~~-l~~l~~L~~L~L~~N~-l~~~~--~-l~~l~~ 179 (291)
T 1h6t_A 113 KLKSLSLEHN-GISDI--NG-LVHLPQLESLYLGNNK--ITDI--TV-LSRLTKLDTLSLEDNQ-ISDIV--P-LAGLTK 179 (291)
T ss_dssp TCCEEECTTS-CCCCC--GG-GGGCTTCCEEECCSSC--CCCC--GG-GGGCTTCSEEECCSSC-CCCCG--G-GTTCTT
T ss_pred CCCEEECCCC-cCCCC--hh-hcCCCCCCEEEccCCc--CCcc--hh-hccCCCCCEEEccCCc-cccch--h-hcCCCc
Confidence 9999999886 44442 22 2367899999998865 4443 22 3458899999998865 54422 2 567889
Q ss_pred CCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 239 LRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 239 L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
|++|++++|. +++- .+...++.|+.++..++.
T Consensus 180 L~~L~L~~N~-i~~l-------~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 180 LQNLYLSKNH-ISDL-------RALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CCEEECCSSC-CCBC-------GGGTTCTTCSEEEEEEEE
T ss_pred cCEEECCCCc-CCCC-------hhhccCCCCCEEECcCCc
Confidence 9999999986 5542 124677888888777764
No 30
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.88 E-value=7.5e-11 Score=88.62 Aligned_cols=136 Identities=19% Similarity=0.119 Sum_probs=78.8
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
.++|+.|+++++ .+++..+......+++|++|+++++ .++.. .....+++|++|+++++. ++.. +..+...+
T Consensus 23 ~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~--l~~~-~~~~~~~l 94 (168)
T 2ell_A 23 PAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENR--IFGG-LDMLAEKL 94 (168)
T ss_dssp TTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCC--CCSC-CCHHHHHC
T ss_pred cccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCc--CchH-HHHHHhhC
Confidence 467888888774 4443333333455677888888775 34432 222356778888887755 4432 33334457
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
++|+.|+++++. +++......+..+++|++|++++|. +++... +.......+++++.++..+|.
T Consensus 95 ~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~--~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 95 PNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLND--YRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp TTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTT--HHHHHHTTCSSCCEETTEETT
T ss_pred CCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHH--HHHHHHHhCccCcEecCCCCC
Confidence 788888887754 5442211223567788888888875 433221 001124667777777777664
No 31
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.88 E-value=1.2e-09 Score=98.29 Aligned_cols=166 Identities=18% Similarity=0.135 Sum_probs=102.3
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
..++.|+++++...... . ...+++|+.|+|+ .+ .++... . ...+++|+.|+|+++ .++. +. -...++
T Consensus 43 ~~L~~L~l~~n~i~~l~---~-l~~l~~L~~L~Ls-~N-~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~--l~-~l~~l~ 109 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQ---G-IQYLPNVTKLFLN-GN-KLTDIK--P-LTNLKNLGWLFLDEN-KIKD--LS-SLKDLK 109 (605)
T ss_dssp TTCCCCBCTTCCCCCCT---T-GGGCTTCCEEECT-TS-CCCCCG--G-GGGCTTCCEEECCSS-CCCC--CT-TSTTCT
T ss_pred CCCCEEECcCCCCCCCh---H-HccCCCCCEEEee-CC-CCCCCh--h-hccCCCCCEEECcCC-CCCC--Ch-hhccCC
Confidence 44777777665432211 1 3467888888888 33 333211 1 345888888888875 4443 11 234578
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|+.|+|+++ .+.. +.. ...+++|+.|+|+++. +++. . ....+++|+.|+|++|. ++... . +..+++
T Consensus 110 ~L~~L~Ls~N-~l~~--l~~-l~~l~~L~~L~Ls~N~--l~~l--~-~l~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~ 176 (605)
T 1m9s_A 110 KLKSLSLEHN-GISD--ING-LVHLPQLESLYLGNNK--ITDI--T-VLSRLTKLDTLSLEDNQ-ISDIV--P-LAGLTK 176 (605)
T ss_dssp TCCEEECTTS-CCCC--CGG-GGGCTTCSEEECCSSC--CCCC--G-GGGSCTTCSEEECCSSC-CCCCG--G-GTTCTT
T ss_pred CCCEEEecCC-CCCC--Ccc-ccCCCccCEEECCCCc--cCCc--h-hhcccCCCCEEECcCCc-CCCch--h-hccCCC
Confidence 8888888876 4443 222 3367888888888865 4433 2 23457888888888764 44321 1 466788
Q ss_pred CCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 239 LRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 239 L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
|++|+|++|. +++. .....++.|+.++..+|.
T Consensus 177 L~~L~Ls~N~-i~~l-------~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 177 LQNLYLSKNH-ISDL-------RALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCEEECCSSC-CCBC-------GGGTTCTTCSEEECCSEE
T ss_pred CCEEECcCCC-CCCC-------hHHccCCCCCEEEccCCc
Confidence 8888888875 5542 234667788887777764
No 32
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.87 E-value=6.3e-10 Score=85.84 Aligned_cols=152 Identities=18% Similarity=0.284 Sum_probs=109.4
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (279)
.+++|++|+++ + ..+++ +.. ...+++|+.|+++++ .+++- . ....+++|++|+++++ .+++.....+. .
T Consensus 42 ~l~~L~~L~l~-~-n~i~~--l~~-l~~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~ 110 (197)
T 4ezg_A 42 QMNSLTYITLA-N-INVTD--LTG-IEYAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGK-DVTSDKIPNLS-G 110 (197)
T ss_dssp HHHTCCEEEEE-S-SCCSC--CTT-GGGCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECT-TCBGGGSCCCT-T
T ss_pred hcCCccEEecc-C-CCccC--hHH-HhcCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECC-ccCcccChhhc-C
Confidence 45789999999 3 34442 112 455899999999986 44432 2 2456899999999986 66654444333 6
Q ss_pred CCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhcc
Q 023680 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRP 262 (279)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 262 (279)
+++|++|+++++. +++.....+. .+++|++|++++|..+++. . .+..+++|++|++++|. +++.. +
T Consensus 111 l~~L~~L~Ls~n~--i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~--~-~l~~l~~L~~L~l~~n~-i~~~~-------~ 176 (197)
T 4ezg_A 111 LTSLTLLDISHSA--HDDSILTKIN-TLPKVNSIDLSYNGAITDI--M-PLKTLPELKSLNIQFDG-VHDYR-------G 176 (197)
T ss_dssp CTTCCEEECCSSB--CBGGGHHHHT-TCSSCCEEECCSCTBCCCC--G-GGGGCSSCCEEECTTBC-CCCCT-------T
T ss_pred CCCCCEEEecCCc--cCcHhHHHHh-hCCCCCEEEccCCCCcccc--H-hhcCCCCCCEEECCCCC-CcChH-------H
Confidence 7999999999966 7776666665 5899999999997646553 2 35778999999999987 65522 4
Q ss_pred ccCcccccccccccccC
Q 023680 263 SRNCCVVKRECSIGCFI 279 (279)
Q Consensus 263 ~~~c~~~~~~~~~~~~~ 279 (279)
...++.|+.+++.+..|
T Consensus 177 l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 177 IEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp GGGCSSCCEEEECBC--
T ss_pred hccCCCCCEEEeeCccc
Confidence 57788999988877543
No 33
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.86 E-value=6.3e-10 Score=92.18 Aligned_cols=162 Identities=19% Similarity=0.099 Sum_probs=85.0
Q ss_pred cCCCcEEEccCCCCcchHHHHHH-cccCCCceEEEeeCCCCCCCHH--HHHHHHh-hCCCCCeEecCCCCCCCHHHHHHH
Q 023680 78 CLGLTHLSLSWCKNNMNNLVLSL-APKLTKLQTLVLRQDKPQLEDN--AVEAIAN-SCHDLQDLDLSKSFKLSDRSLYAL 153 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~~~~~~~~l-~~~~~~L~~L~l~~~~~~~~~~--~l~~l~~-~~~~L~~L~L~~~~~~~~~~l~~l 153 (279)
...+++|+++++.... .....+ ...+++|++|+++ .+ .++.. .+..+.. ..++|+.|+++++ .++..... .
T Consensus 94 l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~Ls-~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~-~ 168 (312)
T 1wwl_A 94 ISGLQELTLENLEVTG-TAPPPLLEATGPDLNILNLR-NV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCE-Q 168 (312)
T ss_dssp TSCCCEEEEEEEBCBS-CCCCCSSSCCSCCCSEEEEE-SC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTT-T
T ss_pred cCCccEEEccCCcccc-hhHHHHHHhcCCCccEEEcc-CC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHH-H
Confidence 4568888887654221 001111 2467888888888 33 33322 2222221 1377888888774 33321111 1
Q ss_pred HhcCCCCCEEEecCCCCCCH-HHHHHHH--HcCCCCcEEEcCCCCCCCCH--HHHHHHHhcCCCCCeEeccCCCCCCHHH
Q 023680 154 AHGCPNLTRLNISGCTSFSD-HALAYLC--GFCRKLKILNLCGCVKAATD--YALQAIGRNCNQLQSLNLGWCEDVGDVG 228 (279)
Q Consensus 154 ~~~~~~L~~L~L~~~~~~~~-~~~~~l~--~~~~~L~~L~L~~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~i~~~~ 228 (279)
...+++|++|+++++ .+.. ..+..-. ..+++|++|+++++. ++. .....+...+++|++|+++++. ++...
T Consensus 169 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~ 244 (312)
T 1wwl_A 169 VRVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG--METPSGVCSALAAARVQLQGLDLSHNS-LRDAA 244 (312)
T ss_dssp CCCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC--CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSC
T ss_pred hccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc--CcchHHHHHHHHhcCCCCCEEECCCCc-CCccc
Confidence 234677888888775 3332 2222111 456778888887754 442 2233444556777888777754 43321
Q ss_pred HHHHHhcCCCCCEEeccCCC
Q 023680 229 VMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 229 l~~l~~~~~~L~~L~l~~c~ 248 (279)
-......+++|++|++++|.
T Consensus 245 ~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 245 GAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp CCSCCCCCTTCCEEECTTSC
T ss_pred chhhhhhcCCCCEEECCCCc
Confidence 01112335677777777765
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.85 E-value=7.7e-11 Score=96.34 Aligned_cols=11 Identities=36% Similarity=0.365 Sum_probs=6.5
Q ss_pred cCCCceEEEee
Q 023680 103 KLTKLQTLVLR 113 (279)
Q Consensus 103 ~~~~L~~L~l~ 113 (279)
.+++|++|+++
T Consensus 78 ~l~~L~~L~l~ 88 (285)
T 1ozn_A 78 GLALLEQLDLS 88 (285)
T ss_dssp TCTTCCEEECC
T ss_pred CccCCCEEeCC
Confidence 45566666665
No 35
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.85 E-value=1.3e-07 Score=72.12 Aligned_cols=125 Identities=13% Similarity=0.202 Sum_probs=95.3
Q ss_pred HHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcC---CCCCEEEecCCCCCCHHHHHHHHH---cCCCCcEEEcCCC
Q 023680 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC---PNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGC 194 (279)
Q Consensus 121 ~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~---~~L~~L~L~~~~~~~~~~~~~l~~---~~~~L~~L~L~~~ 194 (279)
+..+..+....+.|++|+|++...+++++...+++.+ +.|+.|+|+++ .+.+.+...++. .-..|++|+|+++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N 108 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN 108 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC
Confidence 3466677777889999999874589999888877644 57999999986 889888766664 4478999999985
Q ss_pred CCCCCHHHHHHHHhc---CCCCCeEeccCCC--CCCHHHHHHH---HhcCCCCCEEeccCCC
Q 023680 195 VKAATDYALQAIGRN---CNQLQSLNLGWCE--DVGDVGVMNL---AYGCPDLRSLDLCGCV 248 (279)
Q Consensus 195 ~~~~~~~~~~~l~~~---~~~L~~L~l~~~~--~i~~~~l~~l---~~~~~~L~~L~l~~c~ 248 (279)
. +++.+..+++.. -+.|++|+++++. .+++.+..++ ...-+.|++|+++++.
T Consensus 109 ~--Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 109 F--LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp B--CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred c--CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 4 899998887653 3569999998642 5788764433 3455899999998754
No 36
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.84 E-value=4.2e-11 Score=97.93 Aligned_cols=131 Identities=19% Similarity=0.135 Sum_probs=65.5
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.+++|++++..... ........+++|++|+++ .+ .++..... ....+++|+.|+++++..++.... .....+++
T Consensus 33 ~l~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~-~n-~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~ 106 (285)
T 1ozn_A 33 ASQRIFLHGNRISH--VPAASFRACRNLTILWLH-SN-VLARIDAA-AFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGR 106 (285)
T ss_dssp TCSEEECTTSCCCE--ECTTTTTTCTTCCEEECC-SS-CCCEECTT-TTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTT
T ss_pred CceEEEeeCCcCCc--cCHHHcccCCCCCEEECC-CC-ccceeCHh-hcCCccCCCEEeCCCCCCccccCH-HHhcCCcC
Confidence 47888887754321 111123467899999998 33 34322111 223478888888887532332111 11234567
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC 221 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 221 (279)
|++|+++++ .++... ......+++|++|+++++. ++......+ ..+++|++|+++++
T Consensus 107 L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 107 LHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDNA--LQALPDDTF-RDLGNLTHLFLHGN 163 (285)
T ss_dssp CCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCCTTTT-TTCTTCCEEECCSS
T ss_pred CCEEECCCC-cCCEEC-HhHhhCCcCCCEEECCCCc--ccccCHhHh-ccCCCccEEECCCC
Confidence 777777664 332211 1112245666666666543 221111111 23455555555553
No 37
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.84 E-value=1.3e-10 Score=96.96 Aligned_cols=107 Identities=18% Similarity=0.188 Sum_probs=56.0
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcC
Q 023680 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (279)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 236 (279)
+++|++|+++++ .++ .+..-...+++|++|+++++. ++. +..-...+++|++|++++|...+. +...+.++
T Consensus 182 l~~L~~L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~N~--l~~--l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l 252 (328)
T 4fcg_A 182 LVNLQSLRLEWT-GIR--SLPASIANLQNLKSLKIRNSP--LSA--LGPAIHHLPKLEELDLRGCTALRN--YPPIFGGR 252 (328)
T ss_dssp STTCCEEEEEEE-CCC--CCCGGGGGCTTCCEEEEESSC--CCC--CCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCC
T ss_pred CCCCCEEECcCC-CcC--cchHhhcCCCCCCEEEccCCC--CCc--CchhhccCCCCCEEECcCCcchhh--hHHHhcCC
Confidence 455555555553 332 122223356677777776654 331 111123467777777776543222 11223456
Q ss_pred CCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 237 PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 237 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
++|++|++++|..... +-.....++.|+.+++.+|.
T Consensus 253 ~~L~~L~L~~n~~~~~------~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 253 APLKRLILKDCSNLLT------LPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CCCCEEECTTCTTCCB------CCTTGGGCTTCCEEECTTCT
T ss_pred CCCCEEECCCCCchhh------cchhhhcCCCCCEEeCCCCC
Confidence 7777777777664331 11124667777777777764
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.83 E-value=1e-08 Score=89.61 Aligned_cols=10 Identities=30% Similarity=0.262 Sum_probs=5.1
Q ss_pred CCcEEEccCC
Q 023680 80 GLTHLSLSWC 89 (279)
Q Consensus 80 ~l~~l~l~~~ 89 (279)
.+++++++++
T Consensus 178 ~L~~L~l~~n 187 (466)
T 1o6v_A 178 TLERLDISSN 187 (466)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECcCC
Confidence 3555555544
No 39
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.82 E-value=6.2e-11 Score=99.01 Aligned_cols=14 Identities=50% Similarity=0.833 Sum_probs=6.7
Q ss_pred cCCCCCEEeccCCC
Q 023680 235 GCPDLRSLDLCGCV 248 (279)
Q Consensus 235 ~~~~L~~L~l~~c~ 248 (279)
++++|++|++++|.
T Consensus 275 ~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 275 RLTQLEKLDLRGCV 288 (328)
T ss_dssp GCTTCCEEECTTCT
T ss_pred cCCCCCEEeCCCCC
Confidence 34445555555444
No 40
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.82 E-value=4.3e-09 Score=62.70 Aligned_cols=40 Identities=35% Similarity=0.625 Sum_probs=35.1
Q ss_pred CCCCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhcC
Q 023680 40 ITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (279)
Q Consensus 40 ~~~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~~ 79 (279)
...|..||+|++.+||++|+..++.+++.|||+|+.++..
T Consensus 6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTC
T ss_pred CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence 4679999999999999999999999999999999998753
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.82 E-value=1e-11 Score=102.65 Aligned_cols=134 Identities=19% Similarity=0.183 Sum_probs=66.6
Q ss_pred hCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhc
Q 023680 130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN 209 (279)
Q Consensus 130 ~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~ 209 (279)
.+++|+.|+++++ .++.. .......+++|++|+++++ .++...+......+++|++|+++++. +++.....+ ..
T Consensus 124 ~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~-~~ 197 (306)
T 2z66_A 124 SLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQ--LEQLSPTAF-NS 197 (306)
T ss_dssp TCTTCCEEECTTS-CCEEC-STTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC--CCEECTTTT-TT
T ss_pred hccCCCEEECCCC-cCCcc-chhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCCC--cCCcCHHHh-cC
Confidence 3566666666653 22211 1111234566777777664 33321122222345677777777654 333222222 34
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcc-cccccccccc
Q 023680 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCC-VVKRECSIGC 277 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~-~~~~~~~~~~ 277 (279)
+++|++|+++++. ++...... +..+++|++|++++|. +++.... .....| .++.++..++
T Consensus 198 l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~-----~~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 198 LSSLQVLNMSHNN-FFSLDTFP-YKCLNSLQVLDYSLNH-IMTSKKQ-----ELQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CTTCCEEECTTSC-CSBCCSGG-GTTCTTCCEEECTTSC-CCBCSSS-----SCCCCCTTCCEEECTTC
T ss_pred CCCCCEEECCCCc-cCccChhh-ccCcccCCEeECCCCC-CcccCHH-----HHHhhhccCCEEEccCC
Confidence 6777777777654 33211111 2456777777777765 4432221 223443 6666666654
No 42
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.82 E-value=7.1e-10 Score=91.77 Aligned_cols=183 Identities=17% Similarity=0.056 Sum_probs=101.0
Q ss_pred cCCCcEEEccCCCCcchHHHHHHc-ccCCCceEEEeeCCCCCCCHH----HHHHHHhhCCCCCeEecCCCCCCCHHHHHH
Q 023680 78 CLGLTHLSLSWCKNNMNNLVLSLA-PKLTKLQTLVLRQDKPQLEDN----AVEAIANSCHDLQDLDLSKSFKLSDRSLYA 152 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~~----~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 152 (279)
..++++++++++..... ....+. ...++|++|+++ .+ .++.. ....+. .+++|+.|+++++ .++.... .
T Consensus 90 ~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls-~n-~i~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~~-~ 163 (310)
T 4glp_A 90 YSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLR-NV-SWATGRSWLAELQQW-LKPGLKVLSIAQA-HSPAFSC-E 163 (310)
T ss_dssp HSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEE-SC-CCSSTTSSHHHHHTT-BCSCCCEEEEECC-SSCCCCT-T
T ss_pred cCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEee-cc-cccchhhhhHHHHhh-hccCCCEEEeeCC-CcchhhH-H
Confidence 34578888876542211 001111 457788888888 33 33321 111122 4788888888874 3332111 1
Q ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHH--HHcCCCCcEEEcCCCCCCCC--HHHHHHHHhcCCCCCeEeccCCCCCCHHH
Q 023680 153 LAHGCPNLTRLNISGCTSFSDHALAYL--CGFCRKLKILNLCGCVKAAT--DYALQAIGRNCNQLQSLNLGWCEDVGDVG 228 (279)
Q Consensus 153 l~~~~~~L~~L~L~~~~~~~~~~~~~l--~~~~~~L~~L~L~~~~~~~~--~~~~~~l~~~~~~L~~L~l~~~~~i~~~~ 228 (279)
....+++|++|+++++.-....++... ...+++|++|+++++. ++ +.....+...+++|++|+++++. +++..
T Consensus 164 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~ 240 (310)
T 4glp_A 164 QVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG--METPTGVCAALAAAGVQPHSLDLSHNS-LRATV 240 (310)
T ss_dssp SCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC--CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCC
T ss_pred HhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC--CCchHHHHHHHHhcCCCCCEEECCCCC-CCccc
Confidence 224567888888888632222222211 1356888888888865 54 22233344567888888888854 44321
Q ss_pred HHHHHhcC---CCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 229 VMNLAYGC---PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 229 l~~l~~~~---~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
...+ ..+ ++|++|++++|. ++. + +...++.++.++.+++.|
T Consensus 241 p~~~-~~~~~~~~L~~L~Ls~N~-l~~--l------p~~~~~~L~~L~Ls~N~l 284 (310)
T 4glp_A 241 NPSA-PRCMWSSALNSLNLSFAG-LEQ--V------PKGLPAKLRVLDLSSNRL 284 (310)
T ss_dssp CSCC-SSCCCCTTCCCEECCSSC-CCS--C------CSCCCSCCSCEECCSCCC
T ss_pred hhhH-HhccCcCcCCEEECCCCC-CCc--h------hhhhcCCCCEEECCCCcC
Confidence 1111 223 688888888876 541 1 223346777777777653
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.80 E-value=1.9e-09 Score=89.25 Aligned_cols=181 Identities=20% Similarity=0.107 Sum_probs=112.8
Q ss_pred cCCCcEEEccCCCCcc-hHHHHHHcc-cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCH-HHHHHHH
Q 023680 78 CLGLTHLSLSWCKNNM-NNLVLSLAP-KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALA 154 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~~-~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~l~~l~ 154 (279)
.+.+++|++++..... ...+..+.. ..++|++|+++ .+ .++...... ...+++|+.|+++++ .+.. ..+..-.
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~-~N-~l~~~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 195 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA-QA-HSLNFSCEQ-VRVFPALSTLDLSDN-PELGERGLISAL 195 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEE-SC-SCCCCCTTT-CCCCSSCCEEECCSC-TTCHHHHHHHHS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEee-CC-CCccchHHH-hccCCCCCEEECCCC-CcCcchHHHHHH
Confidence 3468899998764322 122222221 24899999999 33 333211111 234889999999995 4443 3332222
Q ss_pred --hcCCCCCEEEecCCCCCCH--HHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHH
Q 023680 155 --HGCPNLTRLNISGCTSFSD--HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVM 230 (279)
Q Consensus 155 --~~~~~L~~L~L~~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~ 230 (279)
..+++|++|+++++ .++. .....+...+++|++|+++++. +++.........+++|++|+++++. ++. +.
T Consensus 196 ~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--ip 269 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS--LRDAAGAPSCDWPSQLNSLNLSFTG-LKQ--VP 269 (312)
T ss_dssp CTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC--CCSSCCCSCCCCCTTCCEEECTTSC-CSS--CC
T ss_pred HhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc--CCcccchhhhhhcCCCCEEECCCCc-cCh--hh
Confidence 67899999999986 5653 2233455678999999999865 4443211122346899999999965 552 21
Q ss_pred HHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 231 NLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 231 ~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
.-+ .++|++|++++|. +++.. ....++.++.++..+..
T Consensus 270 ~~~--~~~L~~L~Ls~N~-l~~~p-------~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 270 KGL--PAKLSVLDLSYNR-LDRNP-------SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SSC--CSEEEEEECCSSC-CCSCC-------CTTTSCEEEEEECTTCT
T ss_pred hhc--cCCceEEECCCCC-CCCCh-------hHhhCCCCCEEeccCCC
Confidence 111 1689999999986 55431 14677888888877653
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.80 E-value=5.4e-10 Score=97.29 Aligned_cols=15 Identities=7% Similarity=-0.372 Sum_probs=7.3
Q ss_pred cCccccccccccccc
Q 023680 264 RNCCVVKRECSIGCF 278 (279)
Q Consensus 264 ~~c~~~~~~~~~~~~ 278 (279)
..++.|+.++..+|.
T Consensus 368 ~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 368 LGLPNLKELALDTNQ 382 (455)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred cccccccEEECCCCc
Confidence 444555555554443
No 45
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.80 E-value=9.8e-09 Score=89.76 Aligned_cols=79 Identities=18% Similarity=0.060 Sum_probs=36.0
Q ss_pred cCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhc
Q 023680 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIR 261 (279)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~ 261 (279)
.+++|+.|+++++. +++... ...+++|+.|++++|. +++. . -+..+++|+.|++++|. +++..
T Consensus 307 ~l~~L~~L~L~~n~--l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~------- 369 (466)
T 1o6v_A 307 NLKNLTYLTLYFNN--ISDISP---VSSLTKLQRLFFYNNK-VSDV--S-SLANLTNINWLSAGHNQ-ISDLT------- 369 (466)
T ss_dssp GCTTCSEEECCSSC--CSCCGG---GGGCTTCCEEECCSSC-CCCC--G-GGTTCTTCCEEECCSSC-CCBCG-------
T ss_pred CCCCCCEEECcCCc--CCCchh---hccCccCCEeECCCCc-cCCc--h-hhccCCCCCEEeCCCCc-cCccc-------
Confidence 44555555555543 222111 2235555555555543 3321 1 12345556666665554 33221
Q ss_pred cccCcccccccccccc
Q 023680 262 PSRNCCVVKRECSIGC 277 (279)
Q Consensus 262 ~~~~c~~~~~~~~~~~ 277 (279)
+...+++++.+++.+|
T Consensus 370 ~~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 370 PLANLTRITQLGLNDQ 385 (466)
T ss_dssp GGTTCTTCCEEECCCE
T ss_pred hhhcCCCCCEEeccCC
Confidence 1355556666655555
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.79 E-value=3.1e-10 Score=92.16 Aligned_cols=14 Identities=14% Similarity=-0.033 Sum_probs=6.9
Q ss_pred cCCCCCEEeccCCC
Q 023680 235 GCPDLRSLDLCGCV 248 (279)
Q Consensus 235 ~~~~L~~L~l~~c~ 248 (279)
.+++|++|++++|.
T Consensus 203 ~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 203 RLTSLQYIWLHDNP 216 (272)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcCCCEEEccCCC
Confidence 34555555555543
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.77 E-value=1.4e-11 Score=101.83 Aligned_cols=184 Identities=18% Similarity=0.116 Sum_probs=103.9
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++..............+++|++|+++ .+ .++. +......+++|+.|+++++ .++..........++
T Consensus 52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls-~n-~i~~--l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~ 126 (306)
T 2z66_A 52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS-FN-GVIT--MSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLR 126 (306)
T ss_dssp TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC-SC-SEEE--EEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCT
T ss_pred ccCCEEECCCCccCcccCcccccccccccCEEECC-CC-cccc--ChhhcCCCCCCCEEECCCC-cccccccchhhhhcc
Confidence 44777777665432111000111146777777777 33 2221 0011223778888888774 333221112245578
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|++|+++++ .+.... ......+++|++|+++++. +++.........+++|++|+++++. ++..... .+..+++
T Consensus 127 ~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~ 200 (306)
T 2z66_A 127 NLIYLDISHT-HTRVAF-NGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT-AFNSLSS 200 (306)
T ss_dssp TCCEEECTTS-CCEECS-TTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-TTTTCTT
T ss_pred CCCEEECCCC-cCCccc-hhhcccCcCCCEEECCCCc--cccccchhHHhhCcCCCEEECCCCC-cCCcCHH-HhcCCCC
Confidence 8888888875 333211 1122356889999998865 4432222233457889999998864 4442212 2356789
Q ss_pred CCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 239 LRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 239 L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
|++|++++|. +++... .....++.++.++..+|.|
T Consensus 201 L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 201 LQVLNMSHNN-FFSLDT-----FPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp CCEEECTTSC-CSBCCS-----GGGTTCTTCCEEECTTSCC
T ss_pred CCEEECCCCc-cCccCh-----hhccCcccCCEeECCCCCC
Confidence 9999999986 443221 1246788888888888754
No 48
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.74 E-value=1.1e-09 Score=95.25 Aligned_cols=39 Identities=18% Similarity=0.036 Sum_probs=21.1
Q ss_pred hcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 234 YGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 234 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
..+++|++|++++|. +++.. ......++.|+.++..+|.
T Consensus 296 ~~l~~L~~L~Ls~n~-l~~~~-----~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 296 SHFTDLEQLTLAQNE-INKID-----DNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp TTCTTCCEEECTTSC-CCEEC-----TTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEECCCCc-ccccC-----hhHhcCcccCCEEECCCCc
Confidence 445666666666654 33221 1123556666666666664
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.73 E-value=1.5e-09 Score=96.27 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=30.1
Q ss_pred CCCcEEEcCCCCCCCCHHHHH-HHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHH
Q 023680 184 RKLKILNLCGCVKAATDYALQ-AIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISS 255 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~ 255 (279)
++|+.|+++++. ++ .+. .+. .+++|++|+++++. ++..... .+..+++|++|++++|....+..+
T Consensus 421 ~~L~~L~Ls~N~--l~--~ip~~~~-~l~~L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 421 PRIKVLDLHSNK--IK--SIPKQVV-KLEALQELNVASNQ-LKSVPDG-IFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp TTCCEEECCSSC--CC--CCCGGGG-GCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCBCCCHHH
T ss_pred ccCCEEECCCCc--cc--ccchhhh-cCCCCCEEECCCCc-CCccCHH-HhccCCcccEEECcCCCCcccCCc
Confidence 455555555543 33 111 122 45666666666543 3321100 134456666666666654444333
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.72 E-value=2e-10 Score=103.65 Aligned_cols=63 Identities=19% Similarity=0.172 Sum_probs=27.6
Q ss_pred cCCCCcEEEcCCCCCCCCHHHHH--HHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 182 FCRKLKILNLCGCVKAATDYALQ--AIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~--~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
.+++|++|+++++. +++..+. .....+++|+.|++++|. ++..... .+.++++|++|++++|.
T Consensus 447 ~l~~L~~L~L~~n~--l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 447 GLPALQHLNLQGNH--FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQH-AFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp TCTTCCEEECTTCB--CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCC--CCccccccchhhccCCCccEEECCCCc-cCccChh-hhccccCCCEEECCCCc
Confidence 34556666665543 3221110 112335556666665543 3221111 12345566666666554
No 51
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.71 E-value=6.3e-11 Score=106.99 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=26.3
Q ss_pred cCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
.+++|++|+++++. +++.........+++|++|++++|. ++.... ..+.++++|++|++++|.
T Consensus 446 ~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 446 GLTSLNTLKMAGNS--FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW-GVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp TCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTSC-CCEECT-TTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCc--CCCcchHHhhccCCCCCEEECCCCc-CCccCh-hhhcccccCCEEECCCCc
Confidence 34555555555543 2221111112234555555555543 222111 112344555555555553
No 52
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.71 E-value=3.5e-11 Score=107.80 Aligned_cols=111 Identities=14% Similarity=0.114 Sum_probs=51.7
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHh
Q 023680 155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY 234 (279)
Q Consensus 155 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 234 (279)
..+++|++|+++++ .+... .......+++|++|+++++. +++..+......+++|+.|++++|. ++..... .+.
T Consensus 418 ~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~--l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~ 491 (570)
T 2z63_A 418 LSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNS--FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPT-AFN 491 (570)
T ss_dssp TTCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCE--EGGGEECSCCTTCTTCCEEECTTSC-CCEECTT-TTT
T ss_pred hcCCCCCEEeCcCC-ccccc-chhhhhcCCcCcEEECcCCc--CccccchhhhhcccCCCEEECCCCc-cccCChh-hhh
Confidence 34556666666554 22211 11112245666666666644 2221111222345666666666643 3322111 124
Q ss_pred cCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 235 GCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 235 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
.+++|++|++++|. +++.. .....+++.++.+++.++
T Consensus 492 ~l~~L~~L~l~~n~-l~~~~-----~~~~~~l~~L~~L~l~~N 528 (570)
T 2z63_A 492 SLSSLQVLNMASNQ-LKSVP-----DGIFDRLTSLQKIWLHTN 528 (570)
T ss_dssp TCTTCCEEECCSSC-CSCCC-----TTTTTTCTTCCEEECCSS
T ss_pred cccCCCEEeCCCCc-CCCCC-----HHHhhcccCCcEEEecCC
Confidence 45666666666664 33321 112355666666666554
No 53
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.69 E-value=2.5e-07 Score=70.58 Aligned_cols=125 Identities=11% Similarity=0.101 Sum_probs=93.4
Q ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc---CCCCcEEEcCCCCCCCCHHHHHHHH---hcCCCCCeEeccC
Q 023680 147 DRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF---CRKLKILNLCGCVKAATDYALQAIG---RNCNQLQSLNLGW 220 (279)
Q Consensus 147 ~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~---~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~ 220 (279)
++.+..+...-+.|++|+|+++..+.+.++..++.. -..|+.|+|+++. ++|.+..+++ ..-+.|++|+|++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~--igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA--ISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC--CBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC--CChHHHHHHHHHHhcCCccCeEecCC
Confidence 456777777788999999987558899988877764 3789999999976 8999876654 3457899999998
Q ss_pred CCCCCHHHHHHHHhcC---CCCCEEeccCCC--CCChHHHHHHhhccccCcccccccccc
Q 023680 221 CEDVGDVGVMNLAYGC---PDLRSLDLCGCV--CITGISSADVIIRPSRNCCVVKRECSI 275 (279)
Q Consensus 221 ~~~i~~~~l~~l~~~~---~~L~~L~l~~c~--~i~~~~~~~l~~~~~~~c~~~~~~~~~ 275 (279)
..|++.+..+++..+ +.|++|++++|. .+.+.+...+.+. .+..+.++.++.+
T Consensus 108 -N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~a-L~~N~tL~~L~l~ 165 (197)
T 1pgv_A 108 -NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMA-IEENESLLRVGIS 165 (197)
T ss_dssp -SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHH-HHHCSSCCEEECC
T ss_pred -CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHH-HHhCCCcCeEecc
Confidence 459999998887654 689999999763 4777776655433 2333445544443
No 54
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.69 E-value=9.3e-09 Score=84.26 Aligned_cols=147 Identities=20% Similarity=0.208 Sum_probs=104.8
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (279)
.+++|+.|.+. .+ .++.- .. ...+++|+.|+++++ .+++.. . ...+++|++|+++++ .++. +.. ...
T Consensus 44 ~l~~L~~L~l~-~~-~i~~~--~~-~~~l~~L~~L~L~~n-~l~~~~--~-l~~l~~L~~L~l~~n-~l~~--~~~-l~~ 110 (291)
T 1h6t_A 44 ELNSIDQIIAN-NS-DIKSV--QG-IQYLPNVTKLFLNGN-KLTDIK--P-LANLKNLGWLFLDEN-KVKD--LSS-LKD 110 (291)
T ss_dssp HHHTCCEEECT-TS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSS-CCCC--GGG-GTT
T ss_pred hcCcccEEEcc-CC-CcccC--hh-HhcCCCCCEEEccCC-ccCCCc--c-cccCCCCCEEECCCC-cCCC--Chh-hcc
Confidence 45789999998 44 33321 12 345899999999985 454322 2 567899999999986 4544 222 347
Q ss_pred CCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhcc
Q 023680 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRP 262 (279)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 262 (279)
+++|++|+++++. +++- ..+ ..+++|+.|+++++. ++.. ..+..+++|++|++++|. +++...
T Consensus 111 l~~L~~L~L~~n~--i~~~--~~l-~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~------- 173 (291)
T 1h6t_A 111 LKKLKSLSLEHNG--ISDI--NGL-VHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP------- 173 (291)
T ss_dssp CTTCCEEECTTSC--CCCC--GGG-GGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCGG-------
T ss_pred CCCCCEEECCCCc--CCCC--hhh-cCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCCc-cccchh-------
Confidence 8999999999976 4442 233 468999999999965 5542 234678999999999986 554322
Q ss_pred ccCcccccccccccccC
Q 023680 263 SRNCCVVKRECSIGCFI 279 (279)
Q Consensus 263 ~~~c~~~~~~~~~~~~~ 279 (279)
...++.|+.++..+|.|
T Consensus 174 l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 174 LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp GTTCTTCCEEECCSSCC
T ss_pred hcCCCccCEEECCCCcC
Confidence 57788999999888764
No 55
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.68 E-value=5.4e-11 Score=106.56 Aligned_cols=135 Identities=16% Similarity=0.084 Sum_probs=70.7
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
+++|+.|+++++ .+...... ...+++|++|+++++ .+...........+++|++|+++++. +..... .....+
T Consensus 372 ~~~L~~L~l~~n-~l~~~~~~--~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~-~~~~~l 444 (570)
T 2z63_A 372 TTSLKYLDLSFN-GVITMSSN--FLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFN-GIFNGL 444 (570)
T ss_dssp CSCCCEEECCSC-SEEEEEEE--EETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSC--CEECCT-TTTTTC
T ss_pred cCccCEEECCCC-cccccccc--ccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCc--ccccch-hhhhcC
Confidence 555555555553 22110000 234566666666654 22211111112356777777777754 322211 122347
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
++|++|++++|. +++..+...+..+++|++|++++|. +++... .....|+.|+.+++.+|.+
T Consensus 445 ~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~-----~~~~~l~~L~~L~l~~n~l 506 (570)
T 2z63_A 445 SSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP-----TAFNSLSSLQVLNMASNQL 506 (570)
T ss_dssp TTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECT-----TTTTTCTTCCEEECCSSCC
T ss_pred CcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCc-cccCCh-----hhhhcccCCCEEeCCCCcC
Confidence 778888887754 3322222334567888888888875 544322 2346778888888877753
No 56
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.67 E-value=8.4e-10 Score=91.63 Aligned_cols=140 Identities=16% Similarity=0.050 Sum_probs=84.8
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (279)
.+++|++|.++ ...++...- .....+++|+.|+++++ .++......+...+++|++|+++++ .++.. ... ..
T Consensus 118 ~~~~L~~L~l~--~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~--~~~-~~ 189 (317)
T 3o53_A 118 RGQGKKNIYLA--NNKITMLRD-LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VV 189 (317)
T ss_dssp CCSSCEEEECC--SSCCCSGGG-BCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CC
T ss_pred ccCCCCEEECC--CCCCCCccc-hhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC-cCccc--ccc-cc
Confidence 35667777777 333332111 11234678888888874 5655444455556788899998886 44332 111 13
Q ss_pred CCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHH
Q 023680 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
+++|++|+++++. ++..... ...+++|+.|+++++. ++. +...+..+++|++|++++|. ++...+..+
T Consensus 190 l~~L~~L~Ls~N~--l~~l~~~--~~~l~~L~~L~L~~N~-l~~--l~~~~~~l~~L~~L~l~~N~-~~~~~~~~~ 257 (317)
T 3o53_A 190 FAKLKTLDLSSNK--LAFMGPE--FQSAAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLRGNG-FHCGTLRDF 257 (317)
T ss_dssp CTTCCEEECCSSC--CCEECGG--GGGGTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECTTCC-CBHHHHHHH
T ss_pred cccCCEEECCCCc--CCcchhh--hcccCcccEEECcCCc-ccc--hhhHhhcCCCCCEEEccCCC-ccCcCHHHH
Confidence 6889999998865 4432111 3457889999998864 553 22234567899999999987 553333333
No 57
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.66 E-value=1.1e-09 Score=88.98 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=112.4
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
..++.+.+.++...... . ...+++|++|+++ .+ .++. +. ....+++|+.|+++++ .++... ......++
T Consensus 41 ~~L~~L~l~~~~i~~~~---~-l~~l~~L~~L~l~-~n-~l~~--~~-~l~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~ 109 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ---G-IQYLPNVRYLALG-GN-KLHD--IS-ALKELTNLTYLILTGN-QLQSLP-NGVFDKLT 109 (272)
T ss_dssp TTCCEEECTTSCCCCCT---T-GGGCTTCCEEECT-TS-CCCC--CG-GGTTCTTCCEEECTTS-CCCCCC-TTTTTTCT
T ss_pred cceeeeeeCCCCccccc---c-cccCCCCcEEECC-CC-CCCC--ch-hhcCCCCCCEEECCCC-ccCccC-hhHhcCCc
Confidence 45888888876533221 1 3468999999999 34 3443 12 2345899999999985 444211 12235679
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|++|+++++ .++... ......+++|++|+++++. ++.... .....+++|+.|++++|. ++... ...+..+++
T Consensus 110 ~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~--l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~ 182 (272)
T 3rfs_A 110 NLKELVLVEN-QLQSLP-DGVFDKLTNLTYLNLAHNQ--LQSLPK-GVFDKLTNLTELDLSYNQ-LQSLP-EGVFDKLTQ 182 (272)
T ss_dssp TCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTT
T ss_pred CCCEEECCCC-cCCccC-HHHhccCCCCCEEECCCCc--cCccCH-HHhccCccCCEEECCCCC-cCccC-HHHhcCCcc
Confidence 9999999986 444211 1122367899999999875 442221 223468999999999965 54321 122467899
Q ss_pred CCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 239 LRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 239 L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
|++|++++|. +++.. ......++.++.++..++.
T Consensus 183 L~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 183 LKDLRLYQNQ-LKSVP-----DGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp CCEEECCSSC-CSCCC-----TTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCc-CCccC-----HHHHhCCcCCCEEEccCCC
Confidence 9999999986 54322 1224677788877777653
No 58
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.66 E-value=2.2e-10 Score=103.46 Aligned_cols=91 Identities=20% Similarity=0.123 Sum_probs=44.4
Q ss_pred cCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhc
Q 023680 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIR 261 (279)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~ 261 (279)
.+++|++|+++++. ++..........+++|++|++++|. ++... ...+..+++|++|++++|. +++..+. ...
T Consensus 398 ~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~--~~~ 470 (606)
T 3t6q_A 398 ECPQLELLDLAFTR--LKVKDAQSPFQNLHLLKVLNLSHSL-LDISS-EQLFDGLPALQHLNLQGNH-FPKGNIQ--KTN 470 (606)
T ss_dssp TCTTCSEEECTTCC--EECCTTCCTTTTCTTCCEEECTTCC-CBTTC-TTTTTTCTTCCEEECTTCB-CGGGEEC--SSC
T ss_pred CCccCCeEECCCCc--CCCcccchhhhCcccCCEEECCCCc-cCCcC-HHHHhCCCCCCEEECCCCC-CCccccc--cch
Confidence 34555555555543 2221111112345666666666643 32211 1123456777777777765 4332110 012
Q ss_pred cccCcccccccccccccC
Q 023680 262 PSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 262 ~~~~c~~~~~~~~~~~~~ 279 (279)
....++.++.++..+|.+
T Consensus 471 ~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 471 SLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp GGGGCTTCCEEECTTSCC
T ss_pred hhccCCCccEEECCCCcc
Confidence 246677777777777653
No 59
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.66 E-value=1.4e-09 Score=100.90 Aligned_cols=157 Identities=22% Similarity=0.258 Sum_probs=72.2
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHH--HHhc
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA--LAHG 156 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~--l~~~ 156 (279)
.++++|+++++..............+++|++|+++ .+. ++......+...+++|++|+++++ .++...... ....
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls-~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~ 176 (768)
T 3rgz_A 100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS-SNT-LDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDG 176 (768)
T ss_dssp TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC-SSE-EECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTC
T ss_pred CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc-CCc-cCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhcc
Confidence 34677777765432110000022356777777776 331 110000011123566777777664 333222211 2345
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcC
Q 023680 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (279)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 236 (279)
+++|++|+++++ .+.... .. ..+++|++|+++++. ++.. ... ...+++|++|+++++. ++.... ..+..+
T Consensus 177 l~~L~~L~Ls~n-~l~~~~--~~-~~l~~L~~L~Ls~n~--l~~~-~~~-l~~l~~L~~L~Ls~n~-l~~~~~-~~l~~l 246 (768)
T 3rgz_A 177 CGELKHLAISGN-KISGDV--DV-SRCVNLEFLDVSSNN--FSTG-IPF-LGDCSALQHLDISGNK-LSGDFS-RAISTC 246 (768)
T ss_dssp CTTCCEEECCSS-EEESCC--BC-TTCTTCCEEECCSSC--CCSC-CCB-CTTCCSCCEEECCSSC-CCSCHH-HHTTTC
T ss_pred CCCCCEEECCCC-cccccC--Cc-ccCCcCCEEECcCCc--CCCC-Ccc-cccCCCCCEEECcCCc-CCCccc-HHHhcC
Confidence 666666666654 222100 00 345666666666654 2211 111 2345666666666643 332222 223455
Q ss_pred CCCCEEeccCCC
Q 023680 237 PDLRSLDLCGCV 248 (279)
Q Consensus 237 ~~L~~L~l~~c~ 248 (279)
++|++|++++|.
T Consensus 247 ~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 247 TELKLLNISSNQ 258 (768)
T ss_dssp SSCCEEECCSSC
T ss_pred CCCCEEECCCCc
Confidence 666666666654
No 60
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.65 E-value=6.8e-09 Score=85.84 Aligned_cols=184 Identities=15% Similarity=0.092 Sum_probs=113.3
Q ss_pred CCcEEEccCCCCcchHHHHHHcc--cCCCceEEEeeCCCCCCCHHHHHHHH-hhCCCCCeEecCCCCCCCHH----HHHH
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIA-NSCHDLQDLDLSKSFKLSDR----SLYA 152 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~~----~l~~ 152 (279)
.++.+.+...... +..+..+.. ..++|++|++. .+ .++......+. ..+++|+.|+++++ .++.. ....
T Consensus 65 ~l~~l~l~~~~~~-~~~~~~~~~~~~~~~L~~L~l~-~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~ 140 (310)
T 4glp_A 65 RVRRLTVGAAQVP-AQLLVGALRVLAYSRLKELTLE-DL-KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQ 140 (310)
T ss_dssp CCCEEEECSCCCB-HHHHHHHHHHHHHSCCCEEEEE-SC-CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHH
T ss_pred ceeEEEEeCCcCC-HHHHHHHHHhcccCceeEEEee-CC-EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHH
Confidence 3677777765433 222222211 34679999999 44 33221111111 45889999999985 45431 1122
Q ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCH-HHHHH--HHhcCCCCCeEeccCCCCCCH--H
Q 023680 153 LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD-YALQA--IGRNCNQLQSLNLGWCEDVGD--V 227 (279)
Q Consensus 153 l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~--l~~~~~~L~~L~l~~~~~i~~--~ 227 (279)
+. .+++|++|+++++ .+..... .....+++|++|+++++. +.. .++.. ....+++|++|++++|. ++. .
T Consensus 141 ~~-~~~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~ 214 (310)
T 4glp_A 141 QW-LKPGLKVLSIAQA-HSPAFSC-EQVRAFPALTSLDLSDNP--GLGERGLMAALCPHKFPAIQNLALRNTG-METPTG 214 (310)
T ss_dssp TT-BCSCCCEEEEECC-SSCCCCT-TSCCCCTTCCEEECCSCT--TCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHH
T ss_pred hh-hccCCCEEEeeCC-CcchhhH-HHhccCCCCCEEECCCCC--CccchhhhHHHhhhcCCCCCEEECCCCC-CCchHH
Confidence 23 6899999999986 4432211 122367899999999965 443 33322 12468999999999975 653 2
Q ss_pred HHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCc---ccccccccccccC
Q 023680 228 GVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNC---CVVKRECSIGCFI 279 (279)
Q Consensus 228 ~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c---~~~~~~~~~~~~~ 279 (279)
....++.++++|++|++++|. +++... .....| +.|+.++.++|.|
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~-l~~~~p-----~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNS-LRATVN-----PSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSC-CCCCCC-----SCCSSCCCCTTCCCEECCSSCC
T ss_pred HHHHHHhcCCCCCEEECCCCC-CCccch-----hhHHhccCcCcCCEEECCCCCC
Confidence 233456788999999999987 544311 112444 6899998888764
No 61
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.64 E-value=3.2e-08 Score=89.07 Aligned_cols=149 Identities=21% Similarity=0.216 Sum_probs=104.4
Q ss_pred cCCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 023680 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 157 (279)
.+.++.|+++++....... ...+++|+.|.|+ .+ .++. +.. ...+++|+.|+|+++ .+++ +.. ...+
T Consensus 64 l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls-~N-~l~~--l~~-l~~l~~L~~L~Ls~N-~l~~--l~~-l~~l 130 (605)
T 1m9s_A 64 LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLD-EN-KIKD--LSS-LKDLKKLKSLSLEHN-GISD--ING-LVHL 130 (605)
T ss_dssp CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECC-SS-CCCC--CTT-STTCTTCCEEECTTS-CCCC--CGG-GGGC
T ss_pred CCCCCEEEeeCCCCCCChh----hccCCCCCEEECc-CC-CCCC--Chh-hccCCCCCEEEecCC-CCCC--Ccc-ccCC
Confidence 4569999998875432221 4578999999999 44 3433 112 344899999999985 4443 222 4568
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
++|+.|+|+++ .++.. . ....+++|+.|+|+++. +.+... ...+++|+.|+|++|. +++ +.. +..++
T Consensus 131 ~~L~~L~Ls~N-~l~~l--~-~l~~l~~L~~L~Ls~N~--l~~~~~---l~~l~~L~~L~Ls~N~-i~~--l~~-l~~l~ 197 (605)
T 1m9s_A 131 PQLESLYLGNN-KITDI--T-VLSRLTKLDTLSLEDNQ--ISDIVP---LAGLTKLQNLYLSKNH-ISD--LRA-LAGLK 197 (605)
T ss_dssp TTCSEEECCSS-CCCCC--G-GGGSCTTCSEEECCSSC--CCCCGG---GTTCTTCCEEECCSSC-CCB--CGG-GTTCT
T ss_pred CccCEEECCCC-ccCCc--h-hhcccCCCCEEECcCCc--CCCchh---hccCCCCCEEECcCCC-CCC--ChH-HccCC
Confidence 99999999986 55542 2 33478999999999976 443322 4568999999999965 555 233 46789
Q ss_pred CCCEEeccCCCCCChH
Q 023680 238 DLRSLDLCGCVCITGI 253 (279)
Q Consensus 238 ~L~~L~l~~c~~i~~~ 253 (279)
+|+.|++++|. +++.
T Consensus 198 ~L~~L~L~~N~-l~~~ 212 (605)
T 1m9s_A 198 NLDVLELFSQE-CLNK 212 (605)
T ss_dssp TCSEEECCSEE-EECC
T ss_pred CCCEEEccCCc-CcCC
Confidence 99999999986 4433
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.63 E-value=1.5e-10 Score=104.49 Aligned_cols=112 Identities=15% Similarity=0.029 Sum_probs=57.1
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhc
Q 023680 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG 235 (279)
Q Consensus 156 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~ 235 (279)
.+++|++|+++++ .+...........+++|++|+++++. ++......+ ..+++|++|+++++. +++..+...+..
T Consensus 397 ~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~~~ 471 (606)
T 3vq2_A 397 GLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN--TKIDFDGIF-LGLTSLNTLKMAGNS-FKDNTLSNVFAN 471 (606)
T ss_dssp TCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC--CEECCTTTT-TTCTTCCEEECTTCE-EGGGEECSCCTT
T ss_pred CCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC--CCccchhhh-cCCCCCCEEECCCCc-CCCcchHHhhcc
Confidence 3455555655553 22211110112245667777776654 332211122 346777777777753 333222223456
Q ss_pred CCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 236 CPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 236 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
+++|++|++++|. +++... .....++.|+.++..+|.
T Consensus 472 l~~L~~L~Ls~n~-l~~~~~-----~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 472 TTNLTFLDLSKCQ-LEQISW-----GVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp CTTCCEEECTTSC-CCEECT-----TTTTTCTTCCEEECCSSC
T ss_pred CCCCCEEECCCCc-CCccCh-----hhhcccccCCEEECCCCc
Confidence 6788888888875 443221 223566667766666664
No 63
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.63 E-value=4.8e-10 Score=90.93 Aligned_cols=157 Identities=19% Similarity=0.141 Sum_probs=85.8
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++.... ....+...+++|++|+++ .+ .++... ......+++|+.|+++++ .++.... .....++
T Consensus 61 ~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l~-~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~ 133 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVT-DN-KLQALP-IGVFDQLVNLAELRLDRN-QLKSLPP-RVFDSLT 133 (270)
T ss_dssp TTCCEEECCSSCCSC--CCTTTTSSCTTCCEEECC-SS-CCCCCC-TTTTTTCSSCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CCCCEEECCCCccCe--eChhhhcCCCCCCEEECC-CC-cCCcCC-HhHcccccCCCEEECCCC-ccCeeCH-HHhCcCc
Confidence 457777776653221 111223456788888887 22 232111 112234778888888764 3332111 1134567
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|++|+++++ .++.... .....+++|++|+++++. ++......+ ..+++|++|+++++. ++... ...+..+++
T Consensus 134 ~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~ 206 (270)
T 2o6q_A 134 KLTYLSLGYN-ELQSLPK-GVFDKLTSLKELRLYNNQ--LKRVPEGAF-DKLTELKTLKLDNNQ-LKRVP-EGAFDSLEK 206 (270)
T ss_dssp TCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC--CSCCCTTTT-TTCTTCCEEECCSSC-CSCCC-TTTTTTCTT
T ss_pred CCCEEECCCC-cCCccCH-hHccCCcccceeEecCCc--CcEeChhHh-ccCCCcCEEECCCCc-CCcCC-HHHhccccC
Confidence 8888888875 3432111 112356888888888754 333221122 347888888888754 44311 112356788
Q ss_pred CCEEeccCCCC
Q 023680 239 LRSLDLCGCVC 249 (279)
Q Consensus 239 L~~L~l~~c~~ 249 (279)
|++|++++|+.
T Consensus 207 L~~L~l~~N~~ 217 (270)
T 2o6q_A 207 LKMLQLQENPW 217 (270)
T ss_dssp CCEEECCSSCB
T ss_pred CCEEEecCCCe
Confidence 88888888763
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.63 E-value=1.4e-09 Score=91.61 Aligned_cols=84 Identities=18% Similarity=0.093 Sum_probs=42.7
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++.-.. ........+++|++|+++ ...++... ......+++|+.|+++++ .++.-........++
T Consensus 76 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls--~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~ 149 (353)
T 2z80_A 76 VNLQALVLTSNGINT--IEEDSFSSLGSLEHLDLS--YNYLSNLS-SSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLT 149 (353)
T ss_dssp TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECC--SSCCSSCC-HHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCT
T ss_pred CCCCEEECCCCccCc--cCHhhcCCCCCCCEEECC--CCcCCcCC-HhHhCCCccCCEEECCCC-CCcccCchhhhccCC
Confidence 457777777653221 111122356778888877 33333211 122344777888887764 333111001234466
Q ss_pred CCCEEEecCC
Q 023680 159 NLTRLNISGC 168 (279)
Q Consensus 159 ~L~~L~L~~~ 168 (279)
+|++|+++++
T Consensus 150 ~L~~L~l~~n 159 (353)
T 2z80_A 150 KLQILRVGNM 159 (353)
T ss_dssp TCCEEEEEES
T ss_pred CCcEEECCCC
Confidence 7777777665
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.61 E-value=6.5e-10 Score=96.54 Aligned_cols=33 Identities=27% Similarity=0.114 Sum_probs=15.5
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEee
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLR 113 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 113 (279)
+.+++|+++++..... .......+++|++|+++
T Consensus 88 ~~L~~L~Ls~n~i~~i--~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTI--EIGAFNGLANLNTLELF 120 (440)
T ss_dssp SSCCEEECCSSCCCEE--CGGGGTTCSSCCEEECC
T ss_pred CCCCEEECCCCcCCcc--ChhhccCCccCCEEECC
Confidence 3466666665432110 01122345666666666
No 66
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.61 E-value=3.1e-08 Score=88.23 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=71.0
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHH--HhhCCCCCeEecCCCCCCCHHH-HHHHHhcCCCCCEEEecCCCCCCHHHHHHH
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAI--ANSCHDLQDLDLSKSFKLSDRS-LYALAHGCPNLTRLNISGCTSFSDHALAYL 179 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~~~~~~~~-l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l 179 (279)
.+++|+.|+++ ...++....... ...+++|+.|+++++ .++... .......+++|++|+++++ .++. +...
T Consensus 332 ~l~~L~~L~Ls--~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~--lp~~ 405 (549)
T 2z81_A 332 HLKSLEFLDLS--ENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRN-TFHP--MPDS 405 (549)
T ss_dssp HCTTCCEEECC--SSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTC-CCCC--CCSC
T ss_pred cCccccEEEcc--CCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCC-CCcc--CChh
Confidence 45666666666 333443332211 123556666666653 333221 1223444566666666554 3321 1111
Q ss_pred HHcCCCCcEEEcCCCCC-------------------CCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCC
Q 023680 180 CGFCRKLKILNLCGCVK-------------------AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240 (279)
Q Consensus 180 ~~~~~~L~~L~L~~~~~-------------------~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~ 240 (279)
...+++|++|+++++.- .+++. ...+++|++|+++++. ++. +... ..+++|+
T Consensus 406 ~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~-l~~--ip~~-~~l~~L~ 476 (549)
T 2z81_A 406 CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNK-LKT--LPDA-SLFPVLL 476 (549)
T ss_dssp CCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSSC-CSS--CCCG-GGCTTCC
T ss_pred hcccccccEEECCCCCcccccchhcCCceEEECCCCChhhh-----cccCChhcEEECCCCc-cCc--CCCc-ccCccCC
Confidence 12334455555554331 02111 1245666666666643 331 2111 3456677
Q ss_pred EEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 241 SLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 241 ~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
+|++++|. +++. .......++.++.+++.++.
T Consensus 477 ~L~Ls~N~-l~~~-----~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 477 VMKISRNQ-LKSV-----PDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp EEECCSSC-CCCC-----CTTGGGGCTTCCEEECCSSC
T ss_pred EEecCCCc-cCCc-----CHHHHhcCcccCEEEecCCC
Confidence 77777664 4321 11223566677777766653
No 67
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.61 E-value=8.1e-10 Score=96.27 Aligned_cols=60 Identities=12% Similarity=-0.055 Sum_probs=27.8
Q ss_pred cCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccc
Q 023680 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIG 276 (279)
Q Consensus 209 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~ 276 (279)
.+++|+.|+++++. ++..... .+.++++|++|++++|. ++.. .......++.++.++..+
T Consensus 240 ~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~-----~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQ-VSLIERN-AFDGLASLVELNLAHNN-LSSL-----PHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp TCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSC-CSCC-----CTTSSTTCTTCCEEECCS
T ss_pred CccCCCEEEeCCCc-CceECHH-HhcCCCCCCEEECCCCc-CCcc-----ChHHhccccCCCEEEccC
Confidence 35556666665533 2221111 12445666666666654 3321 111234555666655554
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.60 E-value=6.2e-09 Score=86.77 Aligned_cols=83 Identities=18% Similarity=0.142 Sum_probs=41.0
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccc
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPS 263 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~ 263 (279)
++|++|+++++. ++......+ ..+++|+.|+++++. ++..... .+..+++|++|++++|. ++. +....
T Consensus 192 ~~L~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~------lp~~l 259 (330)
T 1xku_A 192 PSLTELHLDGNK--ITKVDAASL-KGLNNLAKLGLSFNS-ISAVDNG-SLANTPHLRELHLNNNK-LVK------VPGGL 259 (330)
T ss_dssp TTCSEEECTTSC--CCEECTGGG-TTCTTCCEEECCSSC-CCEECTT-TGGGSTTCCEEECCSSC-CSS------CCTTT
T ss_pred ccCCEEECCCCc--CCccCHHHh-cCCCCCCEEECCCCc-CceeChh-hccCCCCCCEEECCCCc-Ccc------CChhh
Confidence 455666665543 332222222 245667777776643 3321111 12445677777777764 331 11123
Q ss_pred cCccccccccccccc
Q 023680 264 RNCCVVKRECSIGCF 278 (279)
Q Consensus 264 ~~c~~~~~~~~~~~~ 278 (279)
..++.++.++..+|.
T Consensus 260 ~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 260 ADHKYIQVVYLHNNN 274 (330)
T ss_dssp TTCSSCCEEECCSSC
T ss_pred ccCCCcCEEECCCCc
Confidence 556666666666654
No 69
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.60 E-value=1.4e-08 Score=81.97 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=83.8
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
..++.++++++.-... . -...+++|++|+++ .+ .+++..- ...+++|+.|+++++ .++. +..+.. +
T Consensus 41 ~~L~~L~l~~n~i~~l---~-~l~~l~~L~~L~L~-~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~~~--~ 106 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSL---A-GMQFFTNLKELHLS-HN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNGIPS--A 106 (263)
T ss_dssp TTCSEEECTTSCCCCC---T-TGGGCTTCCEEECC-SS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTCCC--S
T ss_pred CcCcEEECcCCCcccc---h-HHhhCCCCCEEECC-CC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCcccc--C
Confidence 4577787776643221 1 12357788888887 33 3332111 345778888888774 3332 111111 6
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|++|+++++ .+++. .. ...+++|+.|+++++. +++. .. ...+++|+.|+++++. +++. ..+..+++
T Consensus 107 ~L~~L~L~~N-~l~~~--~~-l~~l~~L~~L~Ls~N~--i~~~--~~-l~~l~~L~~L~L~~N~-i~~~---~~l~~l~~ 173 (263)
T 1xeu_A 107 CLSRLFLDNN-ELRDT--DS-LIHLKNLEILSIRNNK--LKSI--VM-LGFLSKLEVLDLHGNE-ITNT---GGLTRLKK 173 (263)
T ss_dssp SCCEEECCSS-CCSBS--GG-GTTCTTCCEEECTTSC--CCBC--GG-GGGCTTCCEEECTTSC-CCBC---TTSTTCCC
T ss_pred cccEEEccCC-ccCCC--hh-hcCcccccEEECCCCc--CCCC--hH-HccCCCCCEEECCCCc-Ccch---HHhccCCC
Confidence 7888888775 44432 22 2366788888887754 4443 12 3357788888887754 4443 23356678
Q ss_pred CCEEeccCCC
Q 023680 239 LRSLDLCGCV 248 (279)
Q Consensus 239 L~~L~l~~c~ 248 (279)
|+.|++++|.
T Consensus 174 L~~L~l~~N~ 183 (263)
T 1xeu_A 174 VNWIDLTGQK 183 (263)
T ss_dssp CCEEEEEEEE
T ss_pred CCEEeCCCCc
Confidence 8888888765
No 70
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.59 E-value=3e-09 Score=89.59 Aligned_cols=85 Identities=21% Similarity=0.132 Sum_probs=41.8
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++.-.. ........+++|++|+++ .+ .++.-........+++|+.|+++++..++.... .....++
T Consensus 100 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~-~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~l~ 174 (353)
T 2z80_A 100 GSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLNLL-GN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR-KDFAGLT 174 (353)
T ss_dssp TTCCEEECCSSCCSS--CCHHHHTTCTTCSEEECT-TC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT-TTTTTCC
T ss_pred CCCCEEECCCCcCCc--CCHhHhCCCccCCEEECC-CC-CCcccCchhhhccCCCCcEEECCCCccccccCH-HHccCCC
Confidence 458888887764321 112223467888888887 33 333110001223477788888776422221110 1122345
Q ss_pred CCCEEEecCC
Q 023680 159 NLTRLNISGC 168 (279)
Q Consensus 159 ~L~~L~L~~~ 168 (279)
+|++|+++++
T Consensus 175 ~L~~L~l~~n 184 (353)
T 2z80_A 175 FLEELEIDAS 184 (353)
T ss_dssp EEEEEEEEET
T ss_pred CCCEEECCCC
Confidence 5555555543
No 71
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.57 E-value=1.4e-09 Score=94.68 Aligned_cols=133 Identities=15% Similarity=0.085 Sum_probs=69.8
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
+++|+.|+++++ .++.-. ......+++|++|+++++..+...... ....+++|++|+++++. +++. .. ...+
T Consensus 146 l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~--l~~~--~~-~~~l 217 (452)
T 3zyi_A 146 LSKLRELWLRNN-PIESIP-SYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCN--IKDM--PN-LTPL 217 (452)
T ss_dssp CTTCCEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSC--CSSC--CC-CTTC
T ss_pred cCCCCEEECCCC-CcceeC-HhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCc--cccc--cc-cccc
Confidence 556666666653 332111 111234566666666654333221111 11245677777777654 3321 11 2346
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
++|+.|+++++. ++.... ..+.++++|++|++++|. ++.... .....++.|+.++..++.+
T Consensus 218 ~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~-----~~~~~l~~L~~L~L~~N~l 278 (452)
T 3zyi_A 218 VGLEELEMSGNH-FPEIRP-GSFHGLSSLKKLWVMNSQ-VSLIER-----NAFDGLASLVELNLAHNNL 278 (452)
T ss_dssp TTCCEEECTTSC-CSEECG-GGGTTCTTCCEEECTTSC-CCEECT-----TTTTTCTTCCEEECCSSCC
T ss_pred ccccEEECcCCc-CcccCc-ccccCccCCCEEEeCCCc-CceECH-----HHhcCCCCCCEEECCCCcC
Confidence 777777777754 333211 123566788888888765 443222 2346677888888777653
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.56 E-value=9.4e-10 Score=89.17 Aligned_cols=178 Identities=18% Similarity=0.099 Sum_probs=108.5
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.+++|+++++.... ........+++|++|+++ .+ .++. ....+...+++|+.|+++++ .++.... .....+++
T Consensus 38 ~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~-~n-~l~~-i~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~ 110 (270)
T 2o6q_A 38 DTKKLDLQSNKLSS--LPSKAFHRLTKLRLLYLN-DN-KLQT-LPAGIFKELKNLETLWVTDN-KLQALPI-GVFDQLVN 110 (270)
T ss_dssp TCSEEECCSSCCSC--CCTTSSSSCTTCCEEECC-SS-CCSC-CCTTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCSS
T ss_pred CCCEEECcCCCCCe--eCHHHhcCCCCCCEEECC-CC-ccCe-eChhhhcCCCCCCEEECCCC-cCCcCCH-hHcccccC
Confidence 47888887764321 111123467899999998 33 3331 11122244889999999874 4432111 22356789
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
|++|+++++ .++..... ....+++|++|+++++. ++...... ...+++|++|+++++. ++.... ..+..+++|
T Consensus 111 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~Ls~n~--l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L 183 (270)
T 2o6q_A 111 LAELRLDRN-QLKSLPPR-VFDSLTKLTYLSLGYNE--LQSLPKGV-FDKLTSLKELRLYNNQ-LKRVPE-GAFDKLTEL 183 (270)
T ss_dssp CCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC--CCCCCTTT-TTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTC
T ss_pred CCEEECCCC-ccCeeCHH-HhCcCcCCCEEECCCCc--CCccCHhH-ccCCcccceeEecCCc-CcEeCh-hHhccCCCc
Confidence 999999885 44332111 12367899999999865 44322222 3458999999999864 433211 123567999
Q ss_pred CEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 240 RSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 240 ~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
++|++++|. ++... ......++.++.++..++
T Consensus 184 ~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 184 KTLKLDNNQ-LKRVP-----EGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp CEEECCSSC-CSCCC-----TTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCc-CCcCC-----HHHhccccCCCEEEecCC
Confidence 999999985 54321 223467888888877664
No 73
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.55 E-value=2e-09 Score=99.96 Aligned_cols=159 Identities=21% Similarity=0.236 Sum_probs=96.2
Q ss_pred cCCCceEEEeeCCCCCCCHHHHH-HHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHH--H
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVE-AIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY--L 179 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~-~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~--l 179 (279)
.+++|++|+++ .+ .++..... .....+++|+.|+++++ .++......+...+++|++|+++++ .++...... .
T Consensus 98 ~l~~L~~L~Ls-~n-~l~~~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~ 173 (768)
T 3rgz_A 98 CSASLTSLDLS-RN-SLSGPVTTLTSLGSCSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVL 173 (768)
T ss_dssp CCTTCCEEECC-SS-EEEEEGGGGGGGGGCTTCCEEECCSS-EEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHH
T ss_pred cCCCCCEEECC-CC-cCCCcCCChHHHhCCCCCCEEECcCC-ccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhh
Confidence 45778888887 33 23211111 02234788888888874 2221111112245688888888886 444322222 2
Q ss_pred HHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHh
Q 023680 180 CGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVI 259 (279)
Q Consensus 180 ~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~ 259 (279)
...+++|++|+++++. +++.. .+ ..+++|++|+++++. ++.. +.. +.++++|++|++++|. +++.....+
T Consensus 174 ~~~l~~L~~L~Ls~n~--l~~~~--~~-~~l~~L~~L~Ls~n~-l~~~-~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l- 243 (768)
T 3rgz_A 174 SDGCGELKHLAISGNK--ISGDV--DV-SRCVNLEFLDVSSNN-FSTG-IPF-LGDCSALQHLDISGNK-LSGDFSRAI- 243 (768)
T ss_dssp TTCCTTCCEEECCSSE--EESCC--BC-TTCTTCCEEECCSSC-CCSC-CCB-CTTCCSCCEEECCSSC-CCSCHHHHT-
T ss_pred hccCCCCCEEECCCCc--ccccC--Cc-ccCCcCCEEECcCCc-CCCC-Ccc-cccCCCCCEEECcCCc-CCCcccHHH-
Confidence 4478889999998865 32211 11 468899999999865 3321 112 4678999999999987 655444333
Q ss_pred hccccCcccccccccccccC
Q 023680 260 IRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 260 ~~~~~~c~~~~~~~~~~~~~ 279 (279)
..|++|+.++..+|.+
T Consensus 244 ----~~l~~L~~L~Ls~n~l 259 (768)
T 3rgz_A 244 ----STCTELKLLNISSNQF 259 (768)
T ss_dssp ----TTCSSCCEEECCSSCC
T ss_pred ----hcCCCCCEEECCCCcc
Confidence 6788888888877753
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.51 E-value=2e-09 Score=86.30 Aligned_cols=157 Identities=20% Similarity=0.145 Sum_probs=92.7
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.++.|++++...... .......+++|++|+++ . ..++... ......+++|+.|+++++ .++... ......+++
T Consensus 36 ~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~-~-n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~ 108 (251)
T 3m19_A 36 DTEKLDLQSTGLATL--SDATFRGLTKLTWLNLD-Y-NQLQTLS-AGVFDDLTELGTLGLANN-QLASLP-LGVFDHLTQ 108 (251)
T ss_dssp TCCEEECTTSCCCCC--CTTTTTTCTTCCEEECT-T-SCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTT
T ss_pred CCCEEEccCCCcCcc--CHhHhcCcccCCEEECC-C-CcCCccC-HhHhccCCcCCEEECCCC-cccccC-hhHhcccCC
Confidence 477788776543211 11123467889999988 3 3333211 112234788999999884 444211 122356789
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
|++|+++++ .++... ......+++|++|+++++. ++......+ ..+++|++|+++++. ++... ...+..+++|
T Consensus 109 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L 181 (251)
T 3m19_A 109 LDKLYLGGN-QLKSLP-SGVFDRLTKLKELRLNTNQ--LQSIPAGAF-DKLTNLQTLSLSTNQ-LQSVP-HGAFDRLGKL 181 (251)
T ss_dssp CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCCTTTT-TTCTTCCEEECCSSC-CSCCC-TTTTTTCTTC
T ss_pred CCEEEcCCC-cCCCcC-hhHhccCCcccEEECcCCc--CCccCHHHc-CcCcCCCEEECCCCc-CCccC-HHHHhCCCCC
Confidence 999999885 444211 1112357899999998865 442222222 357889999998864 44221 1223567899
Q ss_pred CEEeccCCCCC
Q 023680 240 RSLDLCGCVCI 250 (279)
Q Consensus 240 ~~L~l~~c~~i 250 (279)
++|++++|..-
T Consensus 182 ~~L~l~~N~~~ 192 (251)
T 3m19_A 182 QTITLFGNQFD 192 (251)
T ss_dssp CEEECCSCCBC
T ss_pred CEEEeeCCcee
Confidence 99999998743
No 75
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.51 E-value=3.9e-09 Score=92.51 Aligned_cols=60 Identities=20% Similarity=0.123 Sum_probs=34.3
Q ss_pred CCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 212 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
+|++|+++++. ++.... ..+..+++|++|++++|. ++... ......++.|+.++..+|.+
T Consensus 225 ~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~-----~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 225 NLTSLSITHCN-LTAVPY-LAVRHLVYLRFLNLSYNP-ISTIE-----GSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp CCSEEEEESSC-CCSCCH-HHHTTCTTCCEEECCSSC-CCEEC-----TTSCTTCTTCCEEECCSSCC
T ss_pred cccEEECcCCc-ccccCH-HHhcCccccCeeECCCCc-CCccC-----hhhccccccCCEEECCCCcc
Confidence 45555555543 332211 234667888888888875 44322 22346777888877777643
No 76
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.51 E-value=7.2e-08 Score=84.05 Aligned_cols=55 Identities=13% Similarity=0.006 Sum_probs=30.1
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
+++|++|+++++. ++... +..+++|++|++++|. +++. +...++.++.++..+|.
T Consensus 169 l~~L~~L~ls~n~-l~~l~----l~~l~~L~~L~l~~N~-l~~~--------~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 169 QTQLTTLDCSFNK-ITELD----VSQNKLLNRLNCDTNN-ITKL--------DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CTTCCEEECCSSC-CCCCC----CTTCTTCCEEECCSSC-CSCC--------CCTTCTTCSEEECCSSC
T ss_pred CCcCCEEECCCCc-cceec----cccCCCCCEEECcCCc-CCee--------ccccCCCCCEEECcCCc
Confidence 4555555555543 33311 2445666666666654 4332 34666777777776664
No 77
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.51 E-value=3.8e-09 Score=90.18 Aligned_cols=83 Identities=18% Similarity=0.207 Sum_probs=41.6
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++.... ........+++|++|+++ .+ .++. ....+...+++|+.|+++++ .++.... .....++
T Consensus 93 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~-~n-~l~~-l~~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~ 165 (390)
T 3o6n_A 93 HTIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLE-RN-DLSS-LPRGIFHNTPKLTTLSMSNN-NLERIED-DTFQATT 165 (390)
T ss_dssp TTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECC-SS-CCCC-CCTTTTTTCTTCCEEECCSS-CCCBCCT-TTTSSCT
T ss_pred CCcCEEECCCCCCCc--CCHHHhcCCCCCCEEECC-CC-ccCc-CCHHHhcCCCCCcEEECCCC-ccCccCh-hhccCCC
Confidence 346677766543211 111122356777777777 22 3331 11112234677777777764 3332111 1134567
Q ss_pred CCCEEEecCC
Q 023680 159 NLTRLNISGC 168 (279)
Q Consensus 159 ~L~~L~L~~~ 168 (279)
+|++|+++++
T Consensus 166 ~L~~L~l~~n 175 (390)
T 3o6n_A 166 SLQNLQLSSN 175 (390)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 7888888775
No 78
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.50 E-value=7.2e-08 Score=84.07 Aligned_cols=139 Identities=18% Similarity=0.070 Sum_probs=64.9
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++.-... . ...+++|++|+++ .+ .++.- . ...+++|+.|+++++ .++... ...++
T Consensus 85 ~~L~~L~Ls~N~l~~~---~--~~~l~~L~~L~L~-~N-~l~~l--~--~~~l~~L~~L~l~~N-~l~~l~----l~~l~ 148 (457)
T 3bz5_A 85 TNLTYLACDSNKLTNL---D--VTPLTKLTYLNCD-TN-KLTKL--D--VSQNPLLTYLNCARN-TLTEID----VSHNT 148 (457)
T ss_dssp TTCSEEECCSSCCSCC---C--CTTCTTCCEEECC-SS-CCSCC--C--CTTCTTCCEEECTTS-CCSCCC----CTTCT
T ss_pred CCCCEEECcCCCCcee---e--cCCCCcCCEEECC-CC-cCCee--c--CCCCCcCCEEECCCC-ccceec----cccCC
Confidence 3466666665533221 1 2345667777666 22 33221 1 233666666666663 333211 23455
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|++|+++++..+.... ...+++|++|+++++. ++... ...+++|+.|+++++. ++... +..+++
T Consensus 149 ~L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~--l~~l~----l~~l~~L~~L~l~~N~-l~~~~----l~~l~~ 213 (457)
T 3bz5_A 149 QLTELDCHLNKKITKLD----VTPQTQLTTLDCSFNK--ITELD----VSQNKLLNRLNCDTNN-ITKLD----LNQNIQ 213 (457)
T ss_dssp TCCEEECTTCSCCCCCC----CTTCTTCCEEECCSSC--CCCCC----CTTCTTCCEEECCSSC-CSCCC----CTTCTT
T ss_pred cCCEEECCCCCcccccc----cccCCcCCEEECCCCc--cceec----cccCCCCCEEECcCCc-CCeec----cccCCC
Confidence 66666665542222211 1234566666666543 33211 2235556666665543 32211 234455
Q ss_pred CCEEeccCCC
Q 023680 239 LRSLDLCGCV 248 (279)
Q Consensus 239 L~~L~l~~c~ 248 (279)
|++|++++|.
T Consensus 214 L~~L~Ls~N~ 223 (457)
T 3bz5_A 214 LTFLDCSSNK 223 (457)
T ss_dssp CSEEECCSSC
T ss_pred CCEEECcCCc
Confidence 5555555544
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.50 E-value=4.6e-09 Score=92.40 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=62.6
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcC
Q 023680 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (279)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 236 (279)
+++|+.|+++++ .++...-. ....+++|++|+++++. ++......+...+++|+.|+++++. ++.. ... ..+
T Consensus 119 l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~Ls~N~--l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~--~~~-~~l 190 (487)
T 3oja_A 119 GQGKKNIYLANN-KITMLRDL-DEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQ-VVF 190 (487)
T ss_dssp CSSCEEEECCSS-CCCSGGGB-CGGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECC-CCC
T ss_pred cCCCCEEECCCC-CCCCCCch-hhcCCCCCCEEECCCCC--CCCcChHHHhhhCCcccEEecCCCc-cccc--ccc-ccC
Confidence 456677777664 33322111 11246778888887754 5554444454457788888887754 4332 111 236
Q ss_pred CCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 237 PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 237 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
++|++|++++|. +++... ....++.|+.++.++|.+
T Consensus 191 ~~L~~L~Ls~N~-l~~~~~------~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 191 AKLKTLDLSSNK-LAFMGP------EFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp TTCCEEECCSSC-CCEECG------GGGGGTTCSEEECTTSCC
T ss_pred CCCCEEECCCCC-CCCCCH------hHcCCCCccEEEecCCcC
Confidence 788888888875 543211 235667788777777653
No 80
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.50 E-value=4.3e-08 Score=86.81 Aligned_cols=177 Identities=15% Similarity=0.177 Sum_probs=117.2
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCH-HHHHHHHhcC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGC 157 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~l~~l~~~~ 157 (279)
..++.++++++...... ....+++|++|+++ ...++......+ ..+++|+.|+++++ .++. ..+......+
T Consensus 302 ~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~Ls--~n~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l 373 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHML----CPSKISPFLHLDFS--NNLLTDTVFENC-GHLTELETLILQMN-QLKELSKIAEMTTQM 373 (520)
T ss_dssp CCCSEEEEESSCCCCCC----CCSSCCCCCEEECC--SSCCCTTTTTTC-CCCSSCCEEECCSS-CCCBHHHHHHHHTTC
T ss_pred CceeEEEcCCCcccccc----chhhCCcccEEEeE--CCccChhhhhhh-ccCCCCCEEEccCC-ccCccccchHHHhhC
Confidence 45899999877543211 11478999999999 334544222222 45899999999995 5554 3455566778
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
++|++|+++++ .+....-......+++|++|+++++. +++.....+ .++|+.|+++++. ++ .+..-+..++
T Consensus 374 ~~L~~L~Ls~N-~l~~~l~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~l---~~~L~~L~Ls~N~-l~--~ip~~~~~l~ 444 (520)
T 2z7x_B 374 KSLQQLDISQN-SVSYDEKKGDCSWTKSLLSLNMSSNI--LTDTIFRCL---PPRIKVLDLHSNK-IK--SIPKQVVKLE 444 (520)
T ss_dssp TTCCEEECCSS-CCBCCGGGCSCCCCTTCCEEECCSSC--CCGGGGGSC---CTTCCEEECCSSC-CC--CCCGGGGGCT
T ss_pred CCCCEEECCCC-cCCcccccchhccCccCCEEECcCCC--CCcchhhhh---cccCCEEECCCCc-cc--ccchhhhcCC
Confidence 99999999986 44431111112356899999999976 554332222 2799999999965 65 2333234789
Q ss_pred CCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 238 DLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 238 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
+|++|++++|. ++.-.. .....++.++.++..++.
T Consensus 445 ~L~~L~L~~N~-l~~l~~-----~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 445 ALQELNVASNQ-LKSVPD-----GIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TCCEEECCSSC-CCCCCT-----TTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCc-CCccCH-----HHhccCCcccEEECcCCC
Confidence 99999999986 553211 125678888888887764
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.49 E-value=6.6e-09 Score=91.37 Aligned_cols=137 Identities=15% Similarity=0.037 Sum_probs=83.0
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (279)
.+++|+.|+++ ...++...- .....+++|+.|+++++ .++......+...+++|++|+|+++ .++.. ... ..
T Consensus 118 ~l~~L~~L~L~--~N~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~--~~~-~~ 189 (487)
T 3oja_A 118 RGQGKKNIYLA--NNKITMLRD-LDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN-FIYDV--KGQ-VV 189 (487)
T ss_dssp CCSSCEEEECC--SSCCCSGGG-BCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS-CCCEE--ECC-CC
T ss_pred ccCCCCEEECC--CCCCCCCCc-hhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC-ccccc--ccc-cc
Confidence 35677777777 333332111 11233778888888874 5555444445556788888888876 44432 111 14
Q ss_pred CCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHH
Q 023680 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISS 255 (279)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~ 255 (279)
+++|+.|+|+++. ++.... . ...+++|+.|+++++. ++. +...+..+++|+.|++++|. ++...+
T Consensus 190 l~~L~~L~Ls~N~--l~~~~~-~-~~~l~~L~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~l~~N~-l~c~~~ 254 (487)
T 3oja_A 190 FAKLKTLDLSSNK--LAFMGP-E-FQSAAGVTWISLRNNK-LVL--IEKALRFSQNLEHFDLRGNG-FHCGTL 254 (487)
T ss_dssp CTTCCEEECCSSC--CCEECG-G-GGGGTTCSEEECTTSC-CCE--ECTTCCCCTTCCEEECTTCC-BCHHHH
T ss_pred CCCCCEEECCCCC--CCCCCH-h-HcCCCCccEEEecCCc-Ccc--cchhhccCCCCCEEEcCCCC-CcCcch
Confidence 6888889888865 443211 1 3357889999998854 543 22224566889999999987 553333
No 82
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.48 E-value=1.3e-08 Score=76.94 Aligned_cols=132 Identities=16% Similarity=0.148 Sum_probs=88.9
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (279)
.+++|+.|.++ ++ .++. +..+....++|+.|+++++ .++.- .....+++|++|+++++ .++... ..+...
T Consensus 17 ~~~~L~~L~l~-~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~ 86 (176)
T 1a9n_A 17 NAVRDRELDLR-GY-KIPV--IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNN-RICRIG-EGLDQA 86 (176)
T ss_dssp CTTSCEEEECT-TS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSS-CCCEEC-SCHHHH
T ss_pred CcCCceEEEee-CC-CCch--hHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCC-cccccC-cchhhc
Confidence 46789999999 33 4442 2334454569999999985 55542 23456789999999986 554321 123347
Q ss_pred CCCCcEEEcCCCCCCCCHHH-HHHHHhcCCCCCeEeccCCCCCCHH--HHHHHHhcCCCCCEEeccCCC
Q 023680 183 CRKLKILNLCGCVKAATDYA-LQAIGRNCNQLQSLNLGWCEDVGDV--GVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~i~~~--~l~~l~~~~~~L~~L~l~~c~ 248 (279)
+++|++|+++++. +++-. +..+ ..+++|+.|+++++. ++.. .-..++..+++|+.|++++|.
T Consensus 87 l~~L~~L~L~~N~--i~~~~~~~~l-~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 87 LPDLTELILTNNS--LVELGDLDPL-ASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CTTCCEEECCSCC--CCCGGGGGGG-GGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCCCEEECCCCc--CCcchhhHhh-hcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 8999999999865 54322 2233 468999999999865 4321 112345778999999999976
No 83
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.47 E-value=7.7e-09 Score=86.21 Aligned_cols=176 Identities=16% Similarity=0.103 Sum_probs=95.1
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++..... .......+++|++|+++ .+ .++.- -....++|+.|+++++ .++.... .....++
T Consensus 76 ~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls-~n-~l~~l----~~~~~~~L~~L~l~~n-~l~~~~~-~~~~~l~ 145 (330)
T 1xku_A 76 KNLHTLILINNKISKI--SPGAFAPLVKLERLYLS-KN-QLKEL----PEKMPKTLQELRVHEN-EITKVRK-SVFNGLN 145 (330)
T ss_dssp TTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECC-SS-CCSBC----CSSCCTTCCEEECCSS-CCCBBCH-HHHTTCT
T ss_pred CCCCEEECCCCcCCee--CHHHhcCCCCCCEEECC-CC-cCCcc----ChhhcccccEEECCCC-cccccCH-hHhcCCc
Confidence 3466666665432110 01112345677777776 22 22210 0011356777777663 3332221 2234567
Q ss_pred CCCEEEecCCCCCCHHH-HHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 159 NLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
+|+.|+++++ .+...+ .......+++|++|+++++. ++... ....++|++|+++++. ++..... .+..++
T Consensus 146 ~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~--l~~l~----~~~~~~L~~L~l~~n~-l~~~~~~-~~~~l~ 216 (330)
T 1xku_A 146 QMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTN--ITTIP----QGLPPSLTELHLDGNK-ITKVDAA-SLKGLN 216 (330)
T ss_dssp TCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSC--CCSCC----SSCCTTCSEEECTTSC-CCEECTG-GGTTCT
T ss_pred cccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCc--cccCC----ccccccCCEEECCCCc-CCccCHH-HhcCCC
Confidence 8888888775 333211 11122356788888887754 33110 0123678888888754 4442222 235678
Q ss_pred CCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 238 DLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 238 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
+|++|++++|. +++... .....++.++.++..+|.+
T Consensus 217 ~L~~L~Ls~n~-l~~~~~-----~~~~~l~~L~~L~L~~N~l 252 (330)
T 1xku_A 217 NLAKLGLSFNS-ISAVDN-----GSLANTPHLRELHLNNNKL 252 (330)
T ss_dssp TCCEEECCSSC-CCEECT-----TTGGGSTTCCEEECCSSCC
T ss_pred CCCEEECCCCc-CceeCh-----hhccCCCCCCEEECCCCcC
Confidence 99999999976 554322 2346778888888888754
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.47 E-value=5.9e-09 Score=83.50 Aligned_cols=155 Identities=14% Similarity=0.109 Sum_probs=72.1
Q ss_pred CCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCC
Q 023680 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (279)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (279)
++++.|+++ ...++.... .....+++|+.|+++++ .++... ......+++|++|+++++ .++... ......++
T Consensus 35 ~~l~~L~L~--~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~ 107 (251)
T 3m19_A 35 ADTEKLDLQ--STGLATLSD-ATFRGLTKLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANN-QLASLP-LGVFDHLT 107 (251)
T ss_dssp TTCCEEECT--TSCCCCCCT-TTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCT
T ss_pred CCCCEEEcc--CCCcCccCH-hHhcCcccCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCC-cccccC-hhHhcccC
Confidence 466777766 222221111 11223667777777663 333211 111234567777777664 333211 11122456
Q ss_pred CCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhcccc
Q 023680 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSR 264 (279)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~ 264 (279)
+|++|+++++. ++.... .....+++|++|+++++. ++.... ..+..+++|++|++++|. ++... .....
T Consensus 108 ~L~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~-----~~~~~ 176 (251)
T 3m19_A 108 QLDKLYLGGNQ--LKSLPS-GVFDRLTKLKELRLNTNQ-LQSIPA-GAFDKLTNLQTLSLSTNQ-LQSVP-----HGAFD 176 (251)
T ss_dssp TCCEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CSCCC-----TTTTT
T ss_pred CCCEEEcCCCc--CCCcCh-hHhccCCcccEEECcCCc-CCccCH-HHcCcCcCCCEEECCCCc-CCccC-----HHHHh
Confidence 77777776643 332111 112346667777776643 332111 122455677777777764 33211 11234
Q ss_pred Ccccccccccccc
Q 023680 265 NCCVVKRECSIGC 277 (279)
Q Consensus 265 ~c~~~~~~~~~~~ 277 (279)
.++.++.++..++
T Consensus 177 ~l~~L~~L~l~~N 189 (251)
T 3m19_A 177 RLGKLQTITLFGN 189 (251)
T ss_dssp TCTTCCEEECCSC
T ss_pred CCCCCCEEEeeCC
Confidence 4555555555543
No 85
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.47 E-value=6.8e-09 Score=86.10 Aligned_cols=170 Identities=19% Similarity=0.132 Sum_probs=105.7
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++.... . .......+++|++|+++ .+ .++... . ...+++|+.|+++++ .++. ....+
T Consensus 34 ~~L~~L~L~~n~l~~-~-~~~~~~~l~~L~~L~Ls-~n-~l~~~~--~-~~~l~~L~~L~Ls~n-~l~~------l~~~~ 99 (317)
T 3o53_A 34 WNVKELDLSGNPLSQ-I-SAADLAPFTKLELLNLS-SN-VLYETL--D-LESLSTLRTLDLNNN-YVQE------LLVGP 99 (317)
T ss_dssp GGCSEEECTTSCCCC-C-CHHHHTTCTTCCEEECT-TS-CCEEEE--E-ETTCTTCCEEECCSS-EEEE------EEECT
T ss_pred CCCCEEECcCCccCc-C-CHHHhhCCCcCCEEECC-CC-cCCcch--h-hhhcCCCCEEECcCC-cccc------ccCCC
Confidence 357888887764322 1 11223467888888887 33 332111 1 344788888888874 3332 11347
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|++|+++++ .++... ...+++|++|+++++. ++...-..+ ..+++|++|+++++. ++......+...+++
T Consensus 100 ~L~~L~l~~n-~l~~~~----~~~~~~L~~L~l~~N~--l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~ 170 (317)
T 3o53_A 100 SIETLHAANN-NISRVS----CSRGQGKKNIYLANNK--ITMLRDLDE-GCRSRVQYLDLKLNE-IDTVNFAELAASSDT 170 (317)
T ss_dssp TCCEEECCSS-CCSEEE----ECCCSSCEEEECCSSC--CCSGGGBCT-GGGSSEEEEECTTSC-CCEEEGGGGGGGTTT
T ss_pred CcCEEECCCC-ccCCcC----ccccCCCCEEECCCCC--CCCccchhh-hccCCCCEEECCCCC-CCcccHHHHhhccCc
Confidence 8888888875 444321 1246889999998865 443322222 347899999999864 655444445556799
Q ss_pred CCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 239 LRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 239 L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
|++|++++|. +++. .+...++.++.++.++|.|
T Consensus 171 L~~L~L~~N~-l~~~-------~~~~~l~~L~~L~Ls~N~l 203 (317)
T 3o53_A 171 LEHLNLQYNF-IYDV-------KGQVVFAKLKTLDLSSNKL 203 (317)
T ss_dssp CCEEECTTSC-CCEE-------ECCCCCTTCCEEECCSSCC
T ss_pred CCEEECCCCc-Cccc-------ccccccccCCEEECCCCcC
Confidence 9999999987 5433 2233578888888888754
No 86
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.47 E-value=7.6e-09 Score=93.33 Aligned_cols=82 Identities=18% Similarity=0.217 Sum_probs=38.6
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.++.|+++++.... ........+++|++|+++ ++ .++. ....+...+++|+.|+++++ .++.... .....+++
T Consensus 100 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~-~n-~l~~-l~~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~ 172 (597)
T 3oja_B 100 TIQKLYMGFNAIRY--LPPHVFQNVPLLTVLVLE-RN-DLSS-LPRGIFHNTPKLTTLSMSNN-NLERIED-DTFQATTS 172 (597)
T ss_dssp TCCEEECCSSCCCC--CCTTTTTTCTTCCEEECC-SS-CCCC-CCTTTTTTCTTCCEEECCSS-CCCBCCT-TTTTTCTT
T ss_pred CCCEEECCCCcCCC--CCHHHHcCCCCCCEEEee-CC-CCCC-CCHHHhccCCCCCEEEeeCC-cCCCCCh-hhhhcCCc
Confidence 45666665543211 111122355667777776 22 2321 11111234667777777664 3332111 11234577
Q ss_pred CCEEEecCC
Q 023680 160 LTRLNISGC 168 (279)
Q Consensus 160 L~~L~L~~~ 168 (279)
|++|+++++
T Consensus 173 L~~L~L~~N 181 (597)
T 3oja_B 173 LQNLQLSSN 181 (597)
T ss_dssp CCEEECTTS
T ss_pred CcEEECcCC
Confidence 777777764
No 87
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.45 E-value=2.6e-08 Score=75.22 Aligned_cols=129 Identities=15% Similarity=0.136 Sum_probs=66.4
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.+++++++++.-.. +..+....++|+.|+++ ...++.- .....+++|+.|+++++ .++.-. ..+...+++
T Consensus 20 ~L~~L~l~~n~l~~---i~~~~~~~~~L~~L~Ls--~N~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~ 89 (176)
T 1a9n_A 20 RDRELDLRGYKIPV---IENLGATLDQFDAIDFS--DNEIRKL---DGFPLLRRLKTLLVNNN-RICRIG-EGLDQALPD 89 (176)
T ss_dssp SCEEEECTTSCCCS---CCCGGGGTTCCSEEECC--SSCCCEE---CCCCCCSSCCEEECCSS-CCCEEC-SCHHHHCTT
T ss_pred CceEEEeeCCCCch---hHHhhhcCCCCCEEECC--CCCCCcc---cccccCCCCCEEECCCC-cccccC-cchhhcCCC
Confidence 46777776654321 12233344577777777 3334331 11233667777777764 444211 112345677
Q ss_pred CCEEEecCCCCCCHHH-HHHHHHcCCCCcEEEcCCCCCCCCHHH--HHHHHhcCCCCCeEeccCCC
Q 023680 160 LTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGCVKAATDYA--LQAIGRNCNQLQSLNLGWCE 222 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~ 222 (279)
|++|+++++ .+.... +. ....+++|+.|+++++. ++... -..+...+++|+.|+++++.
T Consensus 90 L~~L~L~~N-~i~~~~~~~-~l~~l~~L~~L~l~~N~--i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNN-SLVELGDLD-PLASLKSLTYLCILRNP--VTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSC-CCCCGGGGG-GGGGCTTCCEEECCSSG--GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCC-cCCcchhhH-hhhcCCCCCEEEecCCC--CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 777777765 443211 11 22356777777777754 32211 11223457777777777643
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.45 E-value=9.7e-09 Score=92.62 Aligned_cols=32 Identities=28% Similarity=0.165 Sum_probs=14.5
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEee
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLR 113 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~ 113 (279)
.+++|+++++.... ....+...+++|++|+++
T Consensus 124 ~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 124 LLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp TCCEEECCSSCCCC--CCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeeCCCCCC--CCHHHhccCCCCCEEEee
Confidence 46666666543211 111122345556666655
No 89
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.44 E-value=4.2e-09 Score=92.30 Aligned_cols=179 Identities=19% Similarity=0.108 Sum_probs=114.4
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.++.|++++...... .......+++|++|+++ .+ .++..... ....+++|+.|+|+++ .++.... .....+++
T Consensus 33 ~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~-~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 105 (477)
T 2id5_A 33 ETRLLDLGKNRIKTL--NQDEFASFPHLEELELN-EN-IVSAVEPG-AFNNLFNLRTLGLRSN-RLKLIPL-GVFTGLSN 105 (477)
T ss_dssp TCSEEECCSSCCCEE--CTTTTTTCTTCCEEECT-TS-CCCEECTT-TTTTCTTCCEEECCSS-CCCSCCT-TSSTTCTT
T ss_pred CCcEEECCCCccceE--CHhHccCCCCCCEEECC-CC-ccCEeChh-hhhCCccCCEEECCCC-cCCccCc-ccccCCCC
Confidence 478899887643221 11223468999999998 33 44432111 2245899999999884 4442111 12356799
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
|++|+++++ .+.... ......+++|++|+++++. ++......+ ..+++|++|+++++. ++... ...+.++++|
T Consensus 106 L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~L 178 (477)
T 2id5_A 106 LTKLDISEN-KIVILL-DYMFQDLYNLKSLEVGDND--LVYISHRAF-SGLNSLEQLTLEKCN-LTSIP-TEALSHLHGL 178 (477)
T ss_dssp CCEEECTTS-CCCEEC-TTTTTTCTTCCEEEECCTT--CCEECTTSS-TTCTTCCEEEEESCC-CSSCC-HHHHTTCTTC
T ss_pred CCEEECCCC-ccccCC-hhHccccccCCEEECCCCc--cceeChhhc-cCCCCCCEEECCCCc-CcccC-hhHhcccCCC
Confidence 999999986 443221 1122467999999999865 443322223 358999999999864 44322 2234778999
Q ss_pred CEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 240 RSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 240 ~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
+.|++++|. ++.. .......++.++.+++.+|.
T Consensus 179 ~~L~l~~n~-i~~~-----~~~~~~~l~~L~~L~l~~~~ 211 (477)
T 2id5_A 179 IVLRLRHLN-INAI-----RDYSFKRLYRLKVLEISHWP 211 (477)
T ss_dssp CEEEEESCC-CCEE-----CTTCSCSCTTCCEEEEECCT
T ss_pred cEEeCCCCc-CcEe-----ChhhcccCcccceeeCCCCc
Confidence 999999986 5432 22346788899998888764
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.44 E-value=1.3e-09 Score=88.50 Aligned_cols=180 Identities=19% Similarity=0.114 Sum_probs=100.1
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.+++|++++...... .......+++|++|+++ .+ .++.... .....+++|+.|+++++ .++.... .....+++
T Consensus 29 ~l~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~-~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~ 101 (276)
T 2z62_A 29 STKNLDLSFNPLRHL--GSYSFFSFPELQVLDLS-RC-EIQTIED-GAYQSLSHLSTLILTGN-PIQSLAL-GAFSGLSS 101 (276)
T ss_dssp TCCEEECTTCCCCEE--CTTTTTTCTTCSEEECT-TC-CCCEECT-TTTTTCTTCCEEECTTC-CCCEECT-TTTTTCTT
T ss_pred CccEEECCCCccccc--CHhHhccccCCcEEECC-CC-cCCccCH-HHccCCcCCCEEECCCC-ccCccCh-hhhcCCcc
Confidence 478888877643211 11123457889999888 33 3332111 12234788999999874 4432211 12345688
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCH---HHHHHHHhcC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGD---VGVMNLAYGC 236 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~---~~l~~l~~~~ 236 (279)
|++|++.++ .+....... ...+++|++|+++++. ++...+......+++|++|+++++. ++. ..+..+ ...
T Consensus 102 L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~l~~n~--l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L 175 (276)
T 2z62_A 102 LQKLVAVET-NLASLENFP-IGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL-HQM 175 (276)
T ss_dssp CCEEECTTS-CCCCSTTCC-CTTCTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH-HTC
T ss_pred ccEEECCCC-CccccCchh-cccCCCCCEEECcCCc--cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhh-hhc
Confidence 999998875 333211101 2356889999998855 4432222233457889999998864 333 233333 233
Q ss_pred CCCC-EEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 237 PDLR-SLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 237 ~~L~-~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
+.|. +|++++|. ++.... ..-..+.++.++..+|.+
T Consensus 176 ~~l~l~L~ls~n~-l~~~~~------~~~~~~~L~~L~L~~n~l 212 (276)
T 2z62_A 176 PLLNLSLDLSLNP-MNFIQP------GAFKEIRLKELALDTNQL 212 (276)
T ss_dssp TTCCEEEECCSSC-CCEECT------TSSCSCCEEEEECCSSCC
T ss_pred cccceeeecCCCc-ccccCc------cccCCCcccEEECCCCce
Confidence 4443 78888876 543221 112233677777777653
No 91
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.44 E-value=5.1e-09 Score=90.88 Aligned_cols=179 Identities=17% Similarity=0.160 Sum_probs=110.8
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.++.|++++...... .......+++|++|+++ .+ .++.... .....+++|+.|+|+++ .++... ......+++
T Consensus 65 ~l~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls-~n-~i~~i~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~ 137 (440)
T 3zyj_A 65 NTRLLNLHENQIQII--KVNSFKHLRHLEILQLS-RN-HIRTIEI-GAFNGLANLNTLELFDN-RLTTIP-NGAFVYLSK 137 (440)
T ss_dssp TCSEEECCSCCCCEE--CTTTTSSCSSCCEEECC-SS-CCCEECG-GGGTTCSSCCEEECCSS-CCSSCC-TTTSCSCSS
T ss_pred CCcEEEccCCcCCee--CHHHhhCCCCCCEEECC-CC-cCCccCh-hhccCCccCCEEECCCC-cCCeeC-HhHhhcccc
Confidence 477888876543211 11223467899999998 33 3432211 12344889999999884 444211 112355789
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
|++|+++++ .+..... .....+++|++|++++++. +...... ....+++|++|+++++. ++. +.. +..+++|
T Consensus 138 L~~L~L~~N-~i~~~~~-~~~~~l~~L~~L~l~~~~~-l~~i~~~-~~~~l~~L~~L~L~~n~-l~~--~~~-~~~l~~L 209 (440)
T 3zyj_A 138 LKELWLRNN-PIESIPS-YAFNRIPSLRRLDLGELKR-LSYISEG-AFEGLSNLRYLNLAMCN-LRE--IPN-LTPLIKL 209 (440)
T ss_dssp CCEEECCSC-CCCEECT-TTTTTCTTCCEEECCCCTT-CCEECTT-TTTTCSSCCEEECTTSC-CSS--CCC-CTTCSSC
T ss_pred CceeeCCCC-cccccCH-HHhhhCcccCEeCCCCCCC-cceeCcc-hhhcccccCeecCCCCc-Ccc--ccc-cCCCccc
Confidence 999999885 4442111 1223678999999998653 3222111 23458999999999865 442 222 3567899
Q ss_pred CEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 240 RSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 240 ~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
++|++++|. +++.. ......++.|+.+...++.|
T Consensus 210 ~~L~Ls~N~-l~~~~-----~~~~~~l~~L~~L~L~~n~l 243 (440)
T 3zyj_A 210 DELDLSGNH-LSAIR-----PGSFQGLMHLQKLWMIQSQI 243 (440)
T ss_dssp CEEECTTSC-CCEEC-----TTTTTTCTTCCEEECTTCCC
T ss_pred CEEECCCCc-cCccC-----hhhhccCccCCEEECCCCce
Confidence 999999985 65432 23457788888888877754
No 92
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.43 E-value=8.1e-08 Score=77.45 Aligned_cols=145 Identities=19% Similarity=0.130 Sum_probs=100.9
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (279)
.+++|++|+++ ++ .++.- .. ...+++|+.|+++++ .+++..- ...+++|++|+++++ .++. +..+. .
T Consensus 39 ~l~~L~~L~l~-~n-~i~~l--~~-l~~l~~L~~L~L~~N-~i~~~~~---l~~l~~L~~L~L~~N-~l~~--l~~~~-~ 105 (263)
T 1xeu_A 39 ELSGVQNFNGD-NS-NIQSL--AG-MQFFTNLKELHLSHN-QISDLSP---LKDLTKLEELSVNRN-RLKN--LNGIP-S 105 (263)
T ss_dssp HHTTCSEEECT-TS-CCCCC--TT-GGGCTTCCEEECCSS-CCCCCGG---GTTCSSCCEEECCSS-CCSC--CTTCC-C
T ss_pred hcCcCcEEECc-CC-Ccccc--hH-HhhCCCCCEEECCCC-ccCCChh---hccCCCCCEEECCCC-ccCC--cCccc-c
Confidence 56899999998 44 44321 12 345899999999985 4554322 567899999999986 4443 22222 2
Q ss_pred CCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhcc
Q 023680 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRP 262 (279)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 262 (279)
++|++|+++++. +++. .. ...+++|+.|+++++. +++. . .+..+++|++|++++|. +++. ..
T Consensus 106 -~~L~~L~L~~N~--l~~~--~~-l~~l~~L~~L~Ls~N~-i~~~--~-~l~~l~~L~~L~L~~N~-i~~~-------~~ 167 (263)
T 1xeu_A 106 -ACLSRLFLDNNE--LRDT--DS-LIHLKNLEILSIRNNK-LKSI--V-MLGFLSKLEVLDLHGNE-ITNT-------GG 167 (263)
T ss_dssp -SSCCEEECCSSC--CSBS--GG-GTTCTTCCEEECTTSC-CCBC--G-GGGGCTTCCEEECTTSC-CCBC-------TT
T ss_pred -CcccEEEccCCc--cCCC--hh-hcCcccccEEECCCCc-CCCC--h-HHccCCCCCEEECCCCc-Ccch-------HH
Confidence 899999999975 5543 22 3468999999999865 5553 2 34678999999999987 6554 34
Q ss_pred ccCccccccccccccc
Q 023680 263 SRNCCVVKRECSIGCF 278 (279)
Q Consensus 263 ~~~c~~~~~~~~~~~~ 278 (279)
...++.++.++..++.
T Consensus 168 l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp STTCCCCCEEEEEEEE
T ss_pred hccCCCCCEEeCCCCc
Confidence 5778888888777653
No 93
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.43 E-value=9.8e-09 Score=91.88 Aligned_cols=140 Identities=19% Similarity=0.221 Sum_probs=68.4
Q ss_pred cCCCceEEEeeCCCCCCCH-HHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 023680 103 KLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 181 (279)
.+++|+.|+++ ...++. ..+......+++|+.|+++++ .++...-......+++|++|+++++ .++.... .
T Consensus 375 ~l~~L~~L~L~--~N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~----~ 446 (562)
T 3a79_B 375 TLKRLQTLILQ--RNGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSN-MLTGSVF----R 446 (562)
T ss_dssp SCSSCCEEECC--SSCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSS-CCCGGGG----S
T ss_pred ccCCCCEEECC--CCCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCC-CCCcchh----h
Confidence 45666666666 223332 111122234566666666653 2221100111233466666666664 3433211 1
Q ss_pred cC-CCCcEEEcCCCCCCCCHHHHH-HHHhcCCCCCeEeccCCCCCCHHHHHH-HHhcCCCCCEEeccCCCCCChHHHHHH
Q 023680 182 FC-RKLKILNLCGCVKAATDYALQ-AIGRNCNQLQSLNLGWCEDVGDVGVMN-LAYGCPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 182 ~~-~~L~~L~L~~~~~~~~~~~~~-~l~~~~~~L~~L~l~~~~~i~~~~l~~-l~~~~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
.+ ++|++|+++++. ++ .+. .+. .+++|++|+++++. ++. +.. .+..+++|++|++++|+...+..+..+
T Consensus 447 ~l~~~L~~L~L~~N~--l~--~ip~~~~-~l~~L~~L~L~~N~-l~~--l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 518 (562)
T 3a79_B 447 CLPPKVKVLDLHNNR--IM--SIPKDVT-HLQALQELNVASNQ-LKS--VPDGVFDRLTSLQYIWLHDNPWDCTCPGIRY 518 (562)
T ss_dssp SCCTTCSEEECCSSC--CC--CCCTTTT-SSCCCSEEECCSSC-CCC--CCTTSTTTCTTCCCEECCSCCBCCCHHHHHH
T ss_pred hhcCcCCEEECCCCc--Cc--ccChhhc-CCCCCCEEECCCCC-CCC--CCHHHHhcCCCCCEEEecCCCcCCCcchHHH
Confidence 22 467777777654 33 111 122 46777777777644 432 111 235567777777777775555544444
No 94
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.43 E-value=3.9e-09 Score=81.41 Aligned_cols=126 Identities=18% Similarity=0.235 Sum_probs=71.2
Q ss_pred ccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHH
Q 023680 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181 (279)
Q Consensus 102 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~ 181 (279)
..+++|++|+++ .+ .++. +. ....+++|+.|+++++ .++ .+......+++|++|+++++ .++. +..+ .
T Consensus 45 ~~l~~L~~L~ls-~n-~l~~--l~-~~~~l~~L~~L~l~~n-~l~--~l~~~~~~~~~L~~L~L~~N-~l~~--l~~~-~ 112 (198)
T 1ds9_A 45 STLKACKHLALS-TN-NIEK--IS-SLSGMENLRILSLGRN-LIK--KIENLDAVADTLEELWISYN-QIAS--LSGI-E 112 (198)
T ss_dssp HHTTTCSEEECS-EE-EESC--CC-CHHHHTTCCEEEEEEE-EEC--SCSSHHHHHHHCSEEEEEEE-ECCC--HHHH-H
T ss_pred hcCCCCCEEECC-CC-CCcc--cc-ccccCCCCCEEECCCC-Ccc--cccchhhcCCcCCEEECcCC-cCCc--CCcc-c
Confidence 356778888777 22 2222 11 2233677888888764 333 12233344567788888775 4443 2222 2
Q ss_pred cCCCCcEEEcCCCCCCCCHHHH-HHHHhcCCCCCeEeccCCCCCCHH---------HHHHHHhcCCCCCEEe
Q 023680 182 FCRKLKILNLCGCVKAATDYAL-QAIGRNCNQLQSLNLGWCEDVGDV---------GVMNLAYGCPDLRSLD 243 (279)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~i~~~---------~l~~l~~~~~~L~~L~ 243 (279)
.+++|++|+++++. +++... ..+ ..+++|++|+++++. ++.. ....++..+++|+.||
T Consensus 113 ~l~~L~~L~l~~N~--i~~~~~~~~l-~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK--ITNWGEIDKL-AALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEE--CCCHHHHHHH-TTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCc--CCchhHHHHH-hcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 56778888887754 554332 333 357778888887754 3221 1223356677888776
No 95
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.42 E-value=1.3e-10 Score=96.46 Aligned_cols=58 Identities=9% Similarity=-0.158 Sum_probs=30.7
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 213 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
|+.|+++++. ++.. ....+..+++|++|++++|. ++...- ....++.++.++..+|.|
T Consensus 199 L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~------~~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 199 LAFVDLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNS-LAFDLG------KVGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp CSEEECCSSE-EEEC-CGGGCCTTSCCSEEECCSSE-ECCBGG------GCCCCTTCCEEECCSSCC
T ss_pred ccEEECcCCc-ccCc-CCHHHhcCCCCCEEECCCCc-eeeecC------cccccCCCCEEECcCCcc
Confidence 5666665543 2211 11223456777777777765 331110 135567777777777654
No 96
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.42 E-value=4.6e-07 Score=80.67 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=63.1
Q ss_pred CCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHH--HhcCCCCCEEEecCCCCCCHHH-HHHHH
Q 023680 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL--AHGCPNLTRLNISGCTSFSDHA-LAYLC 180 (279)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~~~~~~~~-~~~l~ 180 (279)
.++|++|.+. .+ .++. .-..+...+++|+.|+++++ .++....... ...+++|++|+++++ .++... .....
T Consensus 309 ~~~L~~L~l~-~n-~l~~-ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~ 383 (549)
T 2z81_A 309 LEKVKRITVE-NS-KVFL-VPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEIL 383 (549)
T ss_dssp STTCCEEEEE-SS-CCCC-CCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHG
T ss_pred cccceEEEec-cC-cccc-CCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhh
Confidence 3566666666 22 2221 11223345888888888884 6665544322 345788888888886 554422 22334
Q ss_pred HcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCC
Q 023680 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE 222 (279)
Q Consensus 181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 222 (279)
..+++|++|+++++. ++. +......+++|++|+++++.
T Consensus 384 ~~l~~L~~L~Ls~N~--l~~--lp~~~~~~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 384 LTLKNLTSLDISRNT--FHP--MPDSCQWPEKMRFLNLSSTG 421 (549)
T ss_dssp GGCTTCCEEECTTCC--CCC--CCSCCCCCTTCCEEECTTSC
T ss_pred hcCCCCCEEECCCCC--Ccc--CChhhcccccccEEECCCCC
Confidence 577888888888865 331 11112235666666666643
No 97
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.38 E-value=6.1e-10 Score=92.30 Aligned_cols=60 Identities=13% Similarity=-0.044 Sum_probs=29.3
Q ss_pred cCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 209 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
.+++|+.|+++++. ++.. ... +..+++|++|++++|. +++... .....++.++.++..+|
T Consensus 219 ~l~~L~~L~L~~N~-l~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~p-----~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 219 SDKNTQKIHLAKNS-LAFD-LGK-VGLSKNLNGLDLRNNR-IYGTLP-----QGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp TTSCCSEEECCSSE-ECCB-GGG-CCCCTTCCEEECCSSC-CEECCC-----GGGGGCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCc-eeee-cCc-ccccCCCCEEECcCCc-ccCcCC-----hHHhcCcCCCEEECcCC
Confidence 45667777776643 3211 011 2345666666666665 332211 11244555555555554
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.38 E-value=8.2e-09 Score=80.17 Aligned_cols=133 Identities=18% Similarity=0.089 Sum_probs=71.3
Q ss_pred CCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 023680 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (279)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (279)
.+++++|+++ ...++.. .......+++|+.|+++++ .++... ......+++|++|+++++ .++... ......+
T Consensus 27 ~~~l~~L~l~--~n~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLE--TNSLKSL-PNGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTN-QLQSLP-NGVFDKL 99 (208)
T ss_dssp CTTCSEEECC--SSCCCCC-CTTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred CCCCcEEEcC--CCccCcC-ChhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCC-cCCccC-HhHhcCc
Confidence 3567777777 2233311 1112234677888888763 343211 112345677888888775 333211 1112356
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
++|++|+++++. ++.... .....+++|++|+++++. ++... ...+..+++|++|++++|.
T Consensus 100 ~~L~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 100 TQLKELALNTNQ--LQSLPD-GVFDKLTQLKDLRLYQNQ-LKSVP-DGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TTCCEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSC-CSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred cCCCEEEcCCCc--CcccCH-hHhccCCcCCEEECCCCc-cceeC-HHHhccCCCccEEEecCCC
Confidence 788888887754 332211 122356778888887753 43211 1223556788888888765
No 99
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.37 E-value=3.2e-08 Score=92.49 Aligned_cols=132 Identities=16% Similarity=0.161 Sum_probs=82.3
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHH----HHHHH---hcCCCCCEEEecCCCCCCHHH
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS----LYALA---HGCPNLTRLNISGCTSFSDHA 175 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~----l~~l~---~~~~~L~~L~L~~~~~~~~~~ 175 (279)
.+++|++|+++ .+.... ..- .....+++|+.|+++++..++... +..+. ..+++|++|+++++ .++ .
T Consensus 489 ~L~~L~~L~Ls-~N~l~~-~iP-~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ 562 (876)
T 4ecn_A 489 NLKDLTDVELY-NCPNMT-QLP-DFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--E 562 (876)
T ss_dssp GCTTCCEEEEE-SCTTCC-SCC-GGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--B
T ss_pred cCCCCCEEECc-CCCCCc-cCh-HHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--c
Confidence 67899999998 443221 111 223458899999998853366522 22222 34568999999886 454 3
Q ss_pred HHH--HHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC-CCEEeccCCC
Q 023680 176 LAY--LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD-LRSLDLCGCV 248 (279)
Q Consensus 176 ~~~--l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~-L~~L~l~~c~ 248 (279)
++. ....+++|+.|+++++. ++ .+.. ...+++|+.|+++++. ++ .+..-+..+++ |++|++++|.
T Consensus 563 ip~~~~l~~L~~L~~L~Ls~N~--l~--~lp~-~~~L~~L~~L~Ls~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 563 FPASASLQKMVKLGLLDCVHNK--VR--HLEA-FGTNVKLTDLKLDYNQ-IE--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CCCHHHHTTCTTCCEEECTTSC--CC--BCCC-CCTTSEESEEECCSSC-CS--CCCTTSCEECTTCCEEECCSSC
T ss_pred cCChhhhhcCCCCCEEECCCCC--cc--cchh-hcCCCcceEEECcCCc-cc--cchHHHhhccccCCEEECcCCC
Confidence 433 34478889999998865 44 2222 2357788888888754 44 22222355667 8888888875
No 100
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.36 E-value=4e-09 Score=85.67 Aligned_cols=160 Identities=18% Similarity=0.150 Sum_probs=79.5
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++.... ........+++|++|+++ .+ .++..... ....+++|+.|+++++ .++...-. ....++
T Consensus 52 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~-~n-~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~l~ 124 (276)
T 2z62_A 52 PELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILT-GN-PIQSLALG-AFSGLSSLQKLVAVET-NLASLENF-PIGHLK 124 (276)
T ss_dssp TTCSEEECTTCCCCE--ECTTTTTTCTTCCEEECT-TC-CCCEECTT-TTTTCTTCCEEECTTS-CCCCSTTC-CCTTCT
T ss_pred cCCcEEECCCCcCCc--cCHHHccCCcCCCEEECC-CC-ccCccChh-hhcCCccccEEECCCC-CccccCch-hcccCC
Confidence 457777777653221 011122356777787777 22 33221111 1233677777777664 22211100 133456
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCH---HHHHHHHh-----------------------cCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD---YALQAIGR-----------------------NCNQ 212 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~~~~~l~~-----------------------~~~~ 212 (279)
+|++|+++++ .++...+......+++|++|+++++. ++. ..+..+.. ...+
T Consensus 125 ~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~ 201 (276)
T 2z62_A 125 TLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201 (276)
T ss_dssp TCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCC
T ss_pred CCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCc
Confidence 7777777764 33322222223356777777777654 322 22332221 1225
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCC
Q 023680 213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCI 250 (279)
Q Consensus 213 L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i 250 (279)
|+.|+++++. ++... ..++..+++|++|++++|...
T Consensus 202 L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 202 LKELALDTNQ-LKSVP-DGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EEEEECCSSC-CSCCC-TTTTTTCCSCCEEECCSSCBC
T ss_pred ccEEECCCCc-eeecC-HhHhcccccccEEEccCCccc
Confidence 7777777654 43211 122355678888888876633
No 101
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.34 E-value=6.4e-09 Score=94.48 Aligned_cols=11 Identities=27% Similarity=0.528 Sum_probs=5.4
Q ss_pred CCCCCEEEecC
Q 023680 157 CPNLTRLNISG 167 (279)
Q Consensus 157 ~~~L~~L~L~~ 167 (279)
+++|++|++++
T Consensus 456 l~~L~~L~Ls~ 466 (636)
T 4eco_A 456 GSPLSSINLMG 466 (636)
T ss_dssp TCCCSEEECCS
T ss_pred CCCCCEEECCC
Confidence 44455555544
No 102
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.33 E-value=3e-08 Score=84.60 Aligned_cols=153 Identities=16% Similarity=0.115 Sum_probs=81.8
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
..++.+++++..... ....+...+++|++|+++ .+ .++..... ....+++|+.|+++++ .++.... .....++
T Consensus 45 ~~l~~l~l~~~~l~~--l~~~~~~~l~~L~~L~L~-~n-~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~ 117 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLN-DL-QIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPP-HVFQNVP 117 (390)
T ss_dssp CCCSEEEEESCEESE--ECTHHHHHCCCCSEEECT-TS-CCCEECTT-TTTTCTTCCEEECCSS-CCCCCCT-TTTTTCT
T ss_pred CCceEEEecCCchhh--CChhHhcccccCcEEECC-CC-cccccChh-hccCCCCcCEEECCCC-CCCcCCH-HHhcCCC
Confidence 446677766543211 112233457788888887 33 33321111 1234778888888774 3332111 1234567
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD 238 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~ 238 (279)
+|++|+++++ .++... ..+...+++|++|+++++. ++......+ ..+++|++|+++++. ++... ...+++
T Consensus 118 ~L~~L~L~~n-~l~~l~-~~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~----~~~l~~ 187 (390)
T 3o6n_A 118 LLTVLVLERN-DLSSLP-RGIFHNTPKLTTLSMSNNN--LERIEDDTF-QATTSLQNLQLSSNR-LTHVD----LSLIPS 187 (390)
T ss_dssp TCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCBCCTTTT-SSCTTCCEEECCSSC-CSBCC----GGGCTT
T ss_pred CCCEEECCCC-ccCcCC-HHHhcCCCCCcEEECCCCc--cCccChhhc-cCCCCCCEEECCCCc-CCccc----cccccc
Confidence 8888888775 443211 1112356788888887754 332211122 346778888887754 44322 244577
Q ss_pred CCEEeccCCC
Q 023680 239 LRSLDLCGCV 248 (279)
Q Consensus 239 L~~L~l~~c~ 248 (279)
|++|++++|.
T Consensus 188 L~~L~l~~n~ 197 (390)
T 3o6n_A 188 LFHANVSYNL 197 (390)
T ss_dssp CSEEECCSSC
T ss_pred cceeeccccc
Confidence 7777777764
No 103
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.33 E-value=1.4e-08 Score=83.25 Aligned_cols=154 Identities=25% Similarity=0.169 Sum_probs=92.0
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.++.|++++...... .......+++|++|.++ ...++.... . ..+++|+.|+++++ .++ .+......+++
T Consensus 32 ~l~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~--~n~l~~~~~--~-~~l~~L~~L~Ls~N-~l~--~l~~~~~~l~~ 101 (290)
T 1p9a_G 32 DTTILHLSENLLYTF--SLATLMPYTRLTQLNLD--RAELTKLQV--D-GTLPVLGTLDLSHN-QLQ--SLPLLGQTLPA 101 (290)
T ss_dssp TCCEEECTTSCCSEE--EGGGGTTCTTCCEEECT--TSCCCEEEC--C-SCCTTCCEEECCSS-CCS--SCCCCTTTCTT
T ss_pred CCCEEEcCCCcCCcc--CHHHhhcCCCCCEEECC--CCccCcccC--C-CCCCcCCEEECCCC-cCC--cCchhhccCCC
Confidence 477888876543211 11223467888999888 333432111 1 35788999999874 444 22223456788
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
|++|+++++ .++.... .....+++|++|+++++. ++.... .....+++|+.|+++++. ++... ..++..+++|
T Consensus 102 L~~L~l~~N-~l~~l~~-~~~~~l~~L~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~L~~N~-l~~l~-~~~~~~l~~L 174 (290)
T 1p9a_G 102 LTVLDVSFN-RLTSLPL-GALRGLGELQELYLKGNE--LKTLPP-GLLTPTPKLEKLSLANNN-LTELP-AGLLNGLENL 174 (290)
T ss_dssp CCEEECCSS-CCCCCCS-STTTTCTTCCEEECTTSC--CCCCCT-TTTTTCTTCCEEECTTSC-CSCCC-TTTTTTCTTC
T ss_pred CCEEECCCC-cCcccCH-HHHcCCCCCCEEECCCCC--CCccCh-hhcccccCCCEEECCCCc-CCccC-HHHhcCcCCC
Confidence 999999875 4432111 112356889999998865 442211 123457889999998854 44211 1233567899
Q ss_pred CEEeccCCCCCC
Q 023680 240 RSLDLCGCVCIT 251 (279)
Q Consensus 240 ~~L~l~~c~~i~ 251 (279)
++|++++|. ++
T Consensus 175 ~~L~L~~N~-l~ 185 (290)
T 1p9a_G 175 DTLLLQENS-LY 185 (290)
T ss_dssp CEEECCSSC-CC
T ss_pred CEEECCCCc-CC
Confidence 999999876 44
No 104
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.30 E-value=3e-08 Score=90.71 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=6.1
Q ss_pred CCCCCeEecCC
Q 023680 131 CHDLQDLDLSK 141 (279)
Q Consensus 131 ~~~L~~L~L~~ 141 (279)
+++|+.|++++
T Consensus 72 l~~L~~L~L~~ 82 (680)
T 1ziw_A 72 LPMLKVLNLQH 82 (680)
T ss_dssp CTTCCEEECCS
T ss_pred ccCcCEEECCC
Confidence 55555555554
No 105
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.28 E-value=4.2e-08 Score=89.71 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=91.5
Q ss_pred CCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCC
Q 023680 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (279)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (279)
+++++|+++ .+ .++.... .....+++|+.|+++++ .++...- .....+++|++|+++++ .++...-. ....++
T Consensus 25 ~~l~~L~Ls-~n-~l~~~~~-~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~l~~~-~~~~l~ 97 (680)
T 1ziw_A 25 TNITVLNLT-HN-QLRRLPA-ANFTRYSQLTSLDVGFN-TISKLEP-ELCQKLPMLKVLNLQHN-ELSQLSDK-TFAFCT 97 (680)
T ss_dssp TTCSEEECC-SS-CCCCCCG-GGGGGGTTCSEEECCSS-CCCCCCT-THHHHCTTCCEEECCSS-CCCCCCTT-TTTTCT
T ss_pred CCCcEEECC-CC-CCCCcCH-HHHhCCCcCcEEECCCC-ccCccCH-HHHhcccCcCEEECCCC-ccCccChh-hhccCC
Confidence 689999998 33 3332111 12344899999999884 4443221 22345799999999886 44321111 123678
Q ss_pred CCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhcccc
Q 023680 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSR 264 (279)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~ 264 (279)
+|++|+++++. ++......+ ..+++|++|+++++. ++..... .+.++++|++|++++|. ++......+ ...
T Consensus 98 ~L~~L~L~~n~--l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~~ 168 (680)
T 1ziw_A 98 NLTELHLMSNS--IQKIKNNPF-VKQKNLITLDLSHNG-LSSTKLG-TQVQLENLQELLLSNNK-IQALKSEEL---DIF 168 (680)
T ss_dssp TCSEEECCSSC--CCCCCSCTT-TTCTTCCEEECCSSC-CSCCCCC-SSSCCTTCCEEECCSSC-CCCBCHHHH---GGG
T ss_pred CCCEEECCCCc--cCccChhHc-cccCCCCEEECCCCc-ccccCch-hhcccccCCEEEccCCc-ccccCHHHh---hcc
Confidence 99999998865 332211122 357889999998864 3322111 12467888888888875 443333222 112
Q ss_pred Ccccccccccccc
Q 023680 265 NCCVVKRECSIGC 277 (279)
Q Consensus 265 ~c~~~~~~~~~~~ 277 (279)
.++.++.++..+|
T Consensus 169 ~~~~L~~L~L~~n 181 (680)
T 1ziw_A 169 ANSSLKKLELSSN 181 (680)
T ss_dssp TTCEESEEECTTC
T ss_pred ccccccEEECCCC
Confidence 3456666666555
No 106
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.28 E-value=5.7e-08 Score=88.22 Aligned_cols=158 Identities=13% Similarity=0.088 Sum_probs=87.7
Q ss_pred cCCCcEEEccCCCCcch-----------H----HHHHHcc--cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecC
Q 023680 78 CLGLTHLSLSWCKNNMN-----------N----LVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLS 140 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~~~-----------~----~~~~l~~--~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 140 (279)
...+++|+++++..... . .+..... .+++|++|+++ .+.... ..- .....+++|+.|+++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~-~n~l~~-~~p-~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY-NCPNLT-KLP-TFLKALPEMQLINVA 281 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-CCTTCS-SCC-TTTTTCSSCCEEECT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec-CCcCCc-cCh-HHHhcCCCCCEEECc
Confidence 34688888887653220 0 0222223 67899999998 443221 111 122348899999999
Q ss_pred CCCCCCHHHHHH-HH-----hcCCCCCEEEecCCCCCCHHHHHH--HHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCC
Q 023680 141 KSFKLSDRSLYA-LA-----HGCPNLTRLNISGCTSFSDHALAY--LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ 212 (279)
Q Consensus 141 ~~~~~~~~~l~~-l~-----~~~~~L~~L~L~~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~ 212 (279)
++..++...+.. +. ..+++|++|+++++ .++ .+.. ....+++|++|+++++. ++... ..+ ..+++
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~--l~g~i-p~~-~~l~~ 354 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQ--LEGKL-PAF-GSEIK 354 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCC--CEEEC-CCC-EEEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCc--Cccch-hhh-CCCCC
Confidence 853366623332 22 23488999999886 454 3433 34477888999888765 33111 122 23556
Q ss_pred CCeEeccCCCCCCHHHHHHHHhcCCC-CCEEeccCCC
Q 023680 213 LQSLNLGWCEDVGDVGVMNLAYGCPD-LRSLDLCGCV 248 (279)
Q Consensus 213 L~~L~l~~~~~i~~~~l~~l~~~~~~-L~~L~l~~c~ 248 (279)
|+.|+++++. ++ .+..-+..+++ |++|++++|.
T Consensus 355 L~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 355 LASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp ESEEECCSSE-EE--ECCTTSEEECTTCCEEECCSSC
T ss_pred CCEEECCCCc-cc--cccHhhhhhcccCcEEEccCCc
Confidence 6666666643 32 12111234455 6666666654
No 107
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=2.7e-07 Score=86.34 Aligned_cols=160 Identities=19% Similarity=0.106 Sum_probs=103.8
Q ss_pred cccCCCceEEEeeCCCCCCCHH-----------------HHHHH-HhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCE
Q 023680 101 APKLTKLQTLVLRQDKPQLEDN-----------------AVEAI-ANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR 162 (279)
Q Consensus 101 ~~~~~~L~~L~l~~~~~~~~~~-----------------~l~~l-~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~ 162 (279)
...+++|+.|+++ ...++.. ....+ ...+++|+.|+|+++.... .+......+++|+.
T Consensus 444 l~~L~~L~~L~Ls--~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 444 IQRLTKLQIIYFA--NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT--QLPDFLYDLPELQS 519 (876)
T ss_dssp GGGCTTCCEEEEE--SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC--SCCGGGGGCSSCCE
T ss_pred HhcCCCCCEEECc--CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc--cChHHHhCCCCCCE
Confidence 4467899999999 4445541 11111 1258999999998863222 11233456899999
Q ss_pred EEecCCCCCCHHHHHH----HH---HcCCCCcEEEcCCCCCCCCHHHHHH--HHhcCCCCCeEeccCCCCCCHHHHHHHH
Q 023680 163 LNISGCTSFSDHALAY----LC---GFCRKLKILNLCGCVKAATDYALQA--IGRNCNQLQSLNLGWCEDVGDVGVMNLA 233 (279)
Q Consensus 163 L~L~~~~~~~~~~~~~----l~---~~~~~L~~L~L~~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~i~~~~l~~l~ 233 (279)
|+++++..++...++. +. ..+++|+.|+++++. ++ .+.. ....+++|+.|+++++. ++ .+. .+
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~--~lp-~~ 591 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LE--EFPASASLQKMVKLGLLDCVHNK-VR--HLE-AF 591 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CC--BCCCHHHHTTCTTCCEEECTTSC-CC--BCC-CC
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CC--ccCChhhhhcCCCCCEEECCCCC-cc--cch-hh
Confidence 9999874366522322 22 235699999999966 55 2222 33468999999999865 55 233 34
Q ss_pred hcCCCCCEEeccCCCCCChHHHHHHhhccccCccc-ccccccccccC
Q 023680 234 YGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCV-VKRECSIGCFI 279 (279)
Q Consensus 234 ~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~-~~~~~~~~~~~ 279 (279)
..+++|++|++++|. ++ . +......++. |+.++..+|.+
T Consensus 592 ~~L~~L~~L~Ls~N~-l~--~----lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQ-IE--E----IPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CTTSEESEEECCSSC-CS--C----CCTTSCEECTTCCEEECCSSCC
T ss_pred cCCCcceEEECcCCc-cc--c----chHHHhhccccCCEEECcCCCC
Confidence 677999999999987 54 1 1223566676 77777777653
No 108
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.24 E-value=1.4e-08 Score=95.14 Aligned_cols=181 Identities=19% Similarity=0.086 Sum_probs=105.6
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++.-.. ........+++|++|+++ .+.....-. ......+++|+.|+|+++ .++... ......++
T Consensus 24 ~~l~~LdLs~N~i~~--i~~~~~~~l~~L~~LdLs-~n~~~~~i~-~~~f~~L~~L~~L~Ls~N-~l~~~~-p~~~~~l~ 97 (844)
T 3j0a_A 24 NTTERLLLSFNYIRT--VTASSFPFLEQLQLLELG-SQYTPLTID-KEAFRNLPNLRILDLGSS-KIYFLH-PDAFQGLF 97 (844)
T ss_dssp TTCCEEEEESCCCCE--ECSSSCSSCCSCSEEEEC-TTCCCCEEC-TTTTSSCTTCCEEECTTC-CCCEEC-TTSSCSCS
T ss_pred CCcCEEECCCCcCCc--cChhHCcccccCeEEeCC-CCCCccccC-HHHhcCCCCCCEEECCCC-cCcccC-HhHccCCc
Confidence 458888888764321 111123467889999998 453322100 111245889999999885 444221 12234678
Q ss_pred CCCEEEecCCCCCCHHHHHH-HHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCH---HHHHHHHh
Q 023680 159 NLTRLNISGCTSFSDHALAY-LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGD---VGVMNLAY 234 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~-l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~---~~l~~l~~ 234 (279)
+|++|+|+++ .+++..... ....+++|++|+++++. ++..........+++|++|+++++. ++. ..+..+..
T Consensus 98 ~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~--l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 98 HLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQ--IRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPLQG 173 (844)
T ss_dssp SCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCC--CCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHHHH
T ss_pred ccCEeeCcCC-CCCcccccCccccccCCCCEEECCCCc--ccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccccC
Confidence 9999999886 444321111 12367899999998865 4433222233468899999998854 322 33444322
Q ss_pred cCCCCCEEeccCCCCCChHHHHHHhhccccCccc------ccccccccc
Q 023680 235 GCPDLRSLDLCGCVCITGISSADVIIRPSRNCCV------VKRECSIGC 277 (279)
Q Consensus 235 ~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~------~~~~~~~~~ 277 (279)
++|+.|++++|. ++... .....+|+. ++.++..+|
T Consensus 174 --~~L~~L~L~~n~-l~~~~-----~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 174 --KTLSFFSLAANS-LYSRV-----SVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp --CSSCCCEECCSB-SCCCC-----CCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred --CccceEECCCCc-ccccc-----ccchhhcCCccccCceeEEecCCC
Confidence 789999999876 43321 112344544 777777766
No 109
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.24 E-value=1.4e-07 Score=84.47 Aligned_cols=175 Identities=15% Similarity=0.181 Sum_probs=113.4
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCH-HHHHHHHhcC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGC 157 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~l~~l~~~~ 157 (279)
..+++++++++...... ....+++|++|+++ ...++...... ...+++|+.|+++++ .++. ..+......+
T Consensus 331 ~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~l~--~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l 402 (562)
T 3a79_B 331 MNIKMLSISDTPFIHMV----CPPSPSSFTFLNFT--QNVFTDSVFQG-CSTLKRLQTLILQRN-GLKNFFKVALMTKNM 402 (562)
T ss_dssp CCCSEEEEESSCCCCCC----CCSSCCCCCEEECC--SSCCCTTTTTT-CCSCSSCCEEECCSS-CCCBTTHHHHTTTTC
T ss_pred CcceEEEccCCCccccc----CccCCCCceEEECC--CCccccchhhh-hcccCCCCEEECCCC-CcCCcccchhhhcCC
Confidence 45889998876543211 11467899999999 44454322222 245899999999985 5553 2344445678
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC-CCCCeEeccCCCCCCHHHHHHHHhcC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC-NQLQSLNLGWCEDVGDVGVMNLAYGC 236 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~i~~~~l~~l~~~~ 236 (279)
++|++|+++++ .++...-......+++|++|+++++. +++..+ ... ++|+.|+++++. ++. +..-+.++
T Consensus 403 ~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~----~~l~~~L~~L~L~~N~-l~~--ip~~~~~l 472 (562)
T 3a79_B 403 SSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNM--LTGSVF----RCLPPKVKVLDLHNNR-IMS--IPKDVTHL 472 (562)
T ss_dssp TTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSC--CCGGGG----SSCCTTCSEEECCSSC-CCC--CCTTTTSS
T ss_pred CCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCC--CCcchh----hhhcCcCCEEECCCCc-Ccc--cChhhcCC
Confidence 99999999986 44321111122356899999999966 654322 233 699999999964 552 32222377
Q ss_pred CCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 237 PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 237 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
++|++|++++|. ++.-.. .....++.++.++..++
T Consensus 473 ~~L~~L~L~~N~-l~~l~~-----~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 473 QALQELNVASNQ-LKSVPD-----GVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CCCSEEECCSSC-CCCCCT-----TSTTTCTTCCCEECCSC
T ss_pred CCCCEEECCCCC-CCCCCH-----HHHhcCCCCCEEEecCC
Confidence 999999999986 553111 12467788888777664
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.23 E-value=2.2e-08 Score=78.57 Aligned_cols=144 Identities=14% Similarity=0.061 Sum_probs=89.1
Q ss_pred CCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 023680 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (279)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (279)
.+.+++|+++ ...++..........+++|+.|+++++ .++...- .....+++|++|+|+++ .++.... .....+
T Consensus 31 ~~~~~~L~L~--~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l 104 (220)
T 2v70_A 31 PQYTAELRLN--NNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSN-RLENVQH-KMFKGL 104 (220)
T ss_dssp CTTCSEEECC--SSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCCCCG-GGGTTC
T ss_pred CCCCCEEEcC--CCcCCccCchhhhccCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCC-ccCccCH-hHhcCC
Confidence 3567888888 333432211112345899999999884 4443211 12355789999999985 4433211 122367
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHH
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
++|++|+++++. ++......+ ..+++|+.|+++++. ++... ...+..+++|++|++++|....+..+..+
T Consensus 105 ~~L~~L~Ls~N~--l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~l~c~c~l~~l 174 (220)
T 2v70_A 105 ESLKTLMLRSNR--ITCVGNDSF-IGLSSVRLLSLYDNQ-ITTVA-PGAFDTLHSLSTLNLLANPFNCNCYLAWL 174 (220)
T ss_dssp SSCCEEECTTSC--CCCBCTTSS-TTCTTCSEEECTTSC-CCCBC-TTTTTTCTTCCEEECCSCCEECSGGGHHH
T ss_pred cCCCEEECCCCc--CCeECHhHc-CCCccCCEEECCCCc-CCEEC-HHHhcCCCCCCEEEecCcCCcCCCchHHH
Confidence 999999999865 443222223 357899999999864 44321 12235679999999999886555554443
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.22 E-value=2.3e-08 Score=78.43 Aligned_cols=142 Identities=14% Similarity=0.126 Sum_probs=87.0
Q ss_pred CCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCC
Q 023680 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (279)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (279)
++++.|.++ ...++...- .....+++|+.|+|+++ .++... ......+++|++|+|+++ .++.-. ..+...++
T Consensus 32 ~~l~~L~l~--~n~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~ 104 (220)
T 2v9t_B 32 ETITEIRLE--QNTIKVIPP-GAFSPYKKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGN-KITELP-KSLFEGLF 104 (220)
T ss_dssp TTCCEEECC--SSCCCEECT-TSSTTCTTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred cCCCEEECC--CCcCCCcCH-hHhhCCCCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCC-cCCccC-HhHccCCC
Confidence 578888888 333332111 12234788999999884 444221 112345689999999885 444211 11223678
Q ss_pred CCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHH
Q 023680 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
+|++|+|+++. ++......+ ..+++|+.|+++++. ++.... ..+..+++|++|++++|....+..+..+
T Consensus 105 ~L~~L~L~~N~--l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~L~~N~~~c~c~l~~l 173 (220)
T 2v9t_B 105 SLQLLLLNANK--INCLRVDAF-QDLHNLNLLSLYDNK-LQTIAK-GTFSPLRAIQTMHLAQNPFICDCHLKWL 173 (220)
T ss_dssp TCCEEECCSSC--CCCCCTTTT-TTCTTCCEEECCSSC-CSCCCT-TTTTTCTTCCEEECCSSCEECSGGGHHH
T ss_pred CCCEEECCCCC--CCEeCHHHc-CCCCCCCEEECCCCc-CCEECH-HHHhCCCCCCEEEeCCCCcCCCCccHHH
Confidence 99999999865 443322223 357899999999864 433221 1235678999999999886666665554
No 112
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.20 E-value=5.2e-08 Score=75.60 Aligned_cols=132 Identities=14% Similarity=0.073 Sum_probs=84.9
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
.++|+.|+++++ .++... ......+++|++|+++++ .++... ......+++|++|+++++. ++.... .....+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~--l~~~~~-~~~~~l 99 (208)
T 2o6s_A 27 PAQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNLSTNQ--LQSLPN-GVFDKL 99 (208)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCCT-TTTTTC
T ss_pred CCCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEECCCCc--CCccCH-hHhcCc
Confidence 468999999985 454211 122456799999999985 444211 1122367999999999865 442211 123468
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
++|++|+++++. ++... ...+..+++|++|++++|. +++.. ......++.++.++..++
T Consensus 100 ~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-----~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 100 TQLKELALNTNQ-LQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVP-----DGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp TTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSC-CSCCC-----TTTTTTCTTCCEEECCSC
T ss_pred cCCCEEEcCCCc-CcccC-HhHhccCCcCCEEECCCCc-cceeC-----HHHhccCCCccEEEecCC
Confidence 999999999864 44321 1224667999999999986 54321 122466777777776664
No 113
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.19 E-value=7.5e-08 Score=78.81 Aligned_cols=162 Identities=20% Similarity=0.158 Sum_probs=102.1
Q ss_pred cCCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcC
Q 023680 78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC 157 (279)
Q Consensus 78 ~~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~ 157 (279)
...+++|++++........ ...+++|++|+++ ...++. +......+++|+.|+++++ .++.-. ......+
T Consensus 54 l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~Ls--~N~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~-~~~~~~l 123 (290)
T 1p9a_G 54 YTRLTQLNLDRAELTKLQV----DGTLPVLGTLDLS--HNQLQS--LPLLGQTLPALTVLDVSFN-RLTSLP-LGALRGL 123 (290)
T ss_dssp CTTCCEEECTTSCCCEEEC----CSCCTTCCEEECC--SSCCSS--CCCCTTTCTTCCEEECCSS-CCCCCC-SSTTTTC
T ss_pred CCCCCEEECCCCccCcccC----CCCCCcCCEEECC--CCcCCc--CchhhccCCCCCEEECCCC-cCcccC-HHHHcCC
Confidence 3568999998765332111 1468999999999 333431 1122345889999999984 444211 1123567
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
++|++|+++++ .++... ......+++|+.|+++++. ++.... .....+++|+.|+++++. ++. +..-+...+
T Consensus 124 ~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~--l~~l~~-~~~~~l~~L~~L~L~~N~-l~~--ip~~~~~~~ 195 (290)
T 1p9a_G 124 GELQELYLKGN-ELKTLP-PGLLTPTPKLEKLSLANNN--LTELPA-GLLNGLENLDTLLLQENS-LYT--IPKGFFGSH 195 (290)
T ss_dssp TTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTSC--CSCCCT-TTTTTCTTCCEEECCSSC-CCC--CCTTTTTTC
T ss_pred CCCCEEECCCC-CCCccC-hhhcccccCCCEEECCCCc--CCccCH-HHhcCcCCCCEEECCCCc-CCc--cChhhcccc
Confidence 89999999986 444211 1122367899999999865 442211 233468999999999865 442 222223457
Q ss_pred CCCEEeccCCCCCChHHHHH
Q 023680 238 DLRSLDLCGCVCITGISSAD 257 (279)
Q Consensus 238 ~L~~L~l~~c~~i~~~~~~~ 257 (279)
+|++|++++|+...+..+..
T Consensus 196 ~L~~l~L~~Np~~C~c~~~~ 215 (290)
T 1p9a_G 196 LLPFAFLHGNPWLCNCEILY 215 (290)
T ss_dssp CCSEEECCSCCBCCSGGGHH
T ss_pred cCCeEEeCCCCccCcCccHH
Confidence 89999999988665555443
No 114
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.15 E-value=7.1e-08 Score=76.11 Aligned_cols=134 Identities=19% Similarity=0.129 Sum_probs=83.3
Q ss_pred CCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 023680 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (279)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (279)
.++|++|+++ ...++... ......+++|+.|+|+++ .++.-. ......+++|++|+|+++ .++... ......+
T Consensus 39 ~~~L~~L~Ls--~n~i~~~~-~~~~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLH--DNQITKLE-PGVFDSLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRL 111 (229)
T ss_dssp CTTCSEEECC--SSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred CCCCCEEEcC--CCccCccC-HHHhhCccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCC-cCCccC-hhHhCcc
Confidence 3788999988 33333211 112244788999999884 443211 112356789999999885 444211 1122367
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCC
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCI 250 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i 250 (279)
++|++|+++++. ++ .+..-...+++|+.|+++++. ++.... ..+..+++|+.|++++|...
T Consensus 112 ~~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 112 VHLKELFMCCNK--LT--ELPRGIERLTHLTHLALDQNQ-LKSIPH-GAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCCEEECCSSC--CC--SCCTTGGGCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECTTSCBC
T ss_pred hhhCeEeccCCc--cc--ccCcccccCCCCCEEECCCCc-CCccCH-HHHhCCCCCCEEEeeCCCcc
Confidence 899999999865 44 121112568999999999864 443211 23466789999999998744
No 115
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.13 E-value=9.3e-08 Score=73.61 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=87.8
Q ss_pred HhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHH
Q 023680 128 ANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIG 207 (279)
Q Consensus 128 ~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~ 207 (279)
...+++|+.|+++++ .++. +. ....+++|++|+++++ .++ .+......+++|++|+++++. ++.- ..+.
T Consensus 44 ~~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n-~l~--~l~~~~~~~~~L~~L~L~~N~--l~~l--~~~~ 112 (198)
T 1ds9_A 44 LSTLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRN-LIK--KIENLDAVADTLEELWISYNQ--IASL--SGIE 112 (198)
T ss_dssp HHHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEE-EEC--SCSSHHHHHHHCSEEEEEEEE--CCCH--HHHH
T ss_pred HhcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCC-Ccc--cccchhhcCCcCCEEECcCCc--CCcC--Cccc
Confidence 345899999999875 4443 22 2345689999999986 444 233344456899999999865 5542 3343
Q ss_pred hcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHH-----HHHhhccccCcccccccc
Q 023680 208 RNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISS-----ADVIIRPSRNCCVVKREC 273 (279)
Q Consensus 208 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~-----~~l~~~~~~~c~~~~~~~ 273 (279)
.+++|+.|+++++. ++.......+..+++|++|++++|. +++..- ..+.......+|+++.++
T Consensus 113 -~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 -KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEEC
Confidence 47889999999865 6653322345778999999999986 433311 223333457788888765
No 116
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.13 E-value=4.8e-08 Score=76.57 Aligned_cols=133 Identities=14% Similarity=0.120 Sum_probs=84.7
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
.+.++.|+++++ .++..........+++|++|+++++ .++...-. ....+++|++|+|+++. ++......+ ..+
T Consensus 31 ~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-~~~~l~~L~~L~Ls~N~--l~~~~~~~~-~~l 104 (220)
T 2v70_A 31 PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEG-AFEGASGVNEILLTSNR--LENVQHKMF-KGL 104 (220)
T ss_dssp CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC--CCCCCGGGG-TTC
T ss_pred CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHH-HhCCCCCCCEEECCCCc--cCccCHhHh-cCC
Confidence 456889999984 5543321223466899999999986 45432111 12367999999999865 443322223 468
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
++|++|+++++. ++...- ..+.++++|++|++++|. ++.... .....++.++.++..+.
T Consensus 105 ~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 105 ESLKTLMLRSNR-ITCVGN-DSFIGLSSVRLLSLYDNQ-ITTVAP-----GAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp SSCCEEECTTSC-CCCBCT-TSSTTCTTCSEEECTTSC-CCCBCT-----TTTTTCTTCCEEECCSC
T ss_pred cCCCEEECCCCc-CCeECH-hHcCCCccCCEEECCCCc-CCEECH-----HHhcCCCCCCEEEecCc
Confidence 999999999865 443211 123567999999999986 543221 23456677777666553
No 117
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.12 E-value=3.1e-08 Score=82.64 Aligned_cols=65 Identities=18% Similarity=-0.006 Sum_probs=31.4
Q ss_pred cCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChH
Q 023680 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGI 253 (279)
Q Consensus 182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~ 253 (279)
.+++|++|+++++. ++......+ ..+++|++|+++++. ++. +...+..+++|++|++++|. ++..
T Consensus 215 ~l~~L~~L~L~~N~--l~~~~~~~~-~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l~~N~-l~~~ 279 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQ--IRMIENGSL-SFLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYLHTNN-ITKV 279 (332)
T ss_dssp TCTTCSCCBCCSSC--CCCCCTTGG-GGCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEECCSSC-CCBC
T ss_pred CCCCCCEEECCCCc--CCcCChhHh-hCCCCCCEEECCCCc-Cee--cChhhhcCccCCEEECCCCC-CCcc
Confidence 44566666666543 322211112 245666666666643 331 21113445666666666654 4433
No 118
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.11 E-value=8.7e-08 Score=86.58 Aligned_cols=142 Identities=18% Similarity=0.097 Sum_probs=91.0
Q ss_pred CCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCC
Q 023680 105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR 184 (279)
Q Consensus 105 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~ 184 (279)
+++++|+|+ ...++.-. ......+++|+.|+|+++ .++.-. ......+++|++|+|+++ .++.-... ....++
T Consensus 52 ~~~~~LdLs--~N~i~~l~-~~~f~~l~~L~~L~Ls~N-~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~~~-~f~~L~ 124 (635)
T 4g8a_A 52 FSTKNLDLS--FNPLRHLG-SYSFFSFPELQVLDLSRC-EIQTIE-DGAYQSLSHLSTLILTGN-PIQSLALG-AFSGLS 124 (635)
T ss_dssp TTCCEEECT--TSCCCEEC-TTTTTTCTTCCEEECTTC-CCCEEC-TTTTTTCTTCCEEECTTC-CCCEECGG-GGTTCT
T ss_pred cCCCEEEee--CCCCCCCC-HHHHhCCCCCCEEECCCC-cCCCcC-hhHhcCCCCCCEEEccCC-cCCCCCHH-HhcCCC
Confidence 479999999 44454211 112245899999999985 444211 112356799999999986 45432111 223689
Q ss_pred CCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC---hHHHHHH
Q 023680 185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT---GISSADV 258 (279)
Q Consensus 185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~---~~~~~~l 258 (279)
+|++|+++++. ++.-.-.. ...+++|++|+++++. ++...+...+..+++|++|++++|. ++ ...+..+
T Consensus 125 ~L~~L~Ls~N~--l~~l~~~~-~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L 196 (635)
T 4g8a_A 125 SLQKLVAVETN--LASLENFP-IGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL 196 (635)
T ss_dssp TCCEEECTTSC--CCCSTTCC-CTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH
T ss_pred CCCEEECCCCc--CCCCChhh-hhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCcc-ccccccccccch
Confidence 99999999965 43221111 3468999999999864 4433233445678999999999986 43 3444444
No 119
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.10 E-value=7e-08 Score=87.19 Aligned_cols=158 Identities=19% Similarity=0.126 Sum_probs=97.2
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.+++|++++..-.. ........+++|++|+++ .+ .++.-. ......+++|++|+|+++ .++.-. ......+++
T Consensus 53 ~~~~LdLs~N~i~~--l~~~~f~~l~~L~~L~Ls-~N-~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~-~~~f~~L~~ 125 (635)
T 4g8a_A 53 STKNLDLSFNPLRH--LGSYSFFSFPELQVLDLS-RC-EIQTIE-DGAYQSLSHLSTLILTGN-PIQSLA-LGAFSGLSS 125 (635)
T ss_dssp TCCEEECTTSCCCE--ECTTTTTTCTTCCEEECT-TC-CCCEEC-TTTTTTCTTCCEEECTTC-CCCEEC-GGGGTTCTT
T ss_pred CCCEEEeeCCCCCC--CCHHHHhCCCCCCEEECC-CC-cCCCcC-hhHhcCCCCCCEEEccCC-cCCCCC-HHHhcCCCC
Confidence 48999998764321 111223468999999999 44 333210 112345899999999985 444211 122466899
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCC--CCCHHHHHHHHhcCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE--DVGDVGVMNLAYGCP 237 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--~i~~~~l~~l~~~~~ 237 (279)
|++|+++++ .++.-.- .....+++|++|+++++. ++..........+++|++|+++++. .+....+..+..-..
T Consensus 126 L~~L~Ls~N-~l~~l~~-~~~~~L~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 126 LQKLVAVET-NLASLEN-FPIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp CCEEECTTS-CCCCSTT-CCCTTCTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred CCEEECCCC-cCCCCCh-hhhhcCcccCeeccccCc--cccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence 999999986 4432110 112367999999999865 4433333334568999999999864 123344555533334
Q ss_pred CCCEEeccCCC
Q 023680 238 DLRSLDLCGCV 248 (279)
Q Consensus 238 ~L~~L~l~~c~ 248 (279)
.+..++++.+.
T Consensus 202 ~~~~~~ls~n~ 212 (635)
T 4g8a_A 202 LNLSLDLSLNP 212 (635)
T ss_dssp CCCEEECTTCC
T ss_pred hhhhhhcccCc
Confidence 45678888765
No 120
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.08 E-value=2.1e-08 Score=79.56 Aligned_cols=177 Identities=13% Similarity=0.027 Sum_probs=88.5
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++++++++..... ........+++|++|+++ .+..++.-. ......+++|+.|+++++ .++. +.. ...++
T Consensus 55 ~~L~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~l~-~~n~l~~i~-~~~f~~l~~L~~L~l~~n-~l~~--lp~-~~~l~ 127 (239)
T 2xwt_C 55 PNISRIYVSIDVTLQQ-LESHSFYNLSKVTHIEIR-NTRNLTYID-PDALKELPLLKFLGIFNT-GLKM--FPD-LTKVY 127 (239)
T ss_dssp TTCCEEEEECCSSCCE-ECTTTEESCTTCCEEEEE-EETTCCEEC-TTSEECCTTCCEEEEEEE-CCCS--CCC-CTTCC
T ss_pred CCCcEEeCCCCCCcce-eCHhHcCCCcCCcEEECC-CCCCeeEcC-HHHhCCCCCCCEEeCCCC-CCcc--ccc-ccccc
Confidence 4477777766531110 011122456777777777 323333111 011223677777777764 2332 112 34456
Q ss_pred CCC---EEEecCCCCCCHHHHHHHHHcCCCCc-EEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHh
Q 023680 159 NLT---RLNISGCTSFSDHALAYLCGFCRKLK-ILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY 234 (279)
Q Consensus 159 ~L~---~L~L~~~~~~~~~~~~~l~~~~~~L~-~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 234 (279)
+|+ +|+++++..++.-... ....+++|+ +|+++++. ++.-... .... ++|++|+++++..++... ...+.
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~-~~~~l~~L~~~L~l~~n~--l~~i~~~-~~~~-~~L~~L~L~~n~~l~~i~-~~~~~ 201 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVN-AFQGLCNETLTLKLYNNG--FTSVQGY-AFNG-TKLDAVYLNKNKYLTVID-KDAFG 201 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTT-TTTTTBSSEEEEECCSCC--CCEECTT-TTTT-CEEEEEECTTCTTCCEEC-TTTTT
T ss_pred ccccccEEECCCCcchhhcCcc-cccchhcceeEEEcCCCC--CcccCHh-hcCC-CCCCEEEcCCCCCcccCC-HHHhh
Confidence 666 7777765233221111 112567788 88887754 3321111 1222 678888888764344211 12235
Q ss_pred cC-CCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 235 GC-PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 235 ~~-~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
++ ++|++|++++|. ++.- +....+.++.+.+.+|
T Consensus 202 ~l~~~L~~L~l~~N~-l~~l--------~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTS-VTAL--------PSKGLEHLKELIARNT 236 (239)
T ss_dssp TCSBCCSEEECTTCC-CCCC--------CCTTCTTCSEEECTTC
T ss_pred ccccCCcEEECCCCc-cccC--------ChhHhccCceeeccCc
Confidence 56 788888888865 4321 2223445555555554
No 121
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.06 E-value=1.7e-07 Score=73.89 Aligned_cols=130 Identities=14% Similarity=0.068 Sum_probs=83.7
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
.++|+.|+++++ .++... ......+++|++|+|+++ .+.... ......+++|+.|+|+++. ++...- .....+
T Consensus 39 ~~~L~~L~Ls~n-~i~~~~-~~~~~~l~~L~~L~L~~N-~l~~i~-~~~~~~l~~L~~L~Ls~N~--l~~l~~-~~~~~l 111 (229)
T 3e6j_A 39 PTNAQILYLHDN-QITKLE-PGVFDSLINLKELYLGSN-QLGALP-VGVFDSLTQLTVLDLGTNQ--LTVLPS-AVFDRL 111 (229)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCCT-TTTTTC
T ss_pred CCCCCEEEcCCC-ccCccC-HHHhhCccCCcEEECCCC-CCCCcC-hhhcccCCCcCEEECCCCc--CCccCh-hHhCcc
Confidence 478999999985 444321 122356799999999986 443211 1122467999999999965 442211 223468
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccc
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIG 276 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~ 276 (279)
++|+.|+++++. ++. +..-+..+++|++|++++|. ++.... .....++.++.+...+
T Consensus 112 ~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 112 VHLKELFMCCNK-LTE--LPRGIERLTHLTHLALDQNQ-LKSIPH-----GAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TTCCEEECCSSC-CCS--CCTTGGGCTTCSEEECCSSC-CCCCCT-----TTTTTCTTCCEEECTT
T ss_pred hhhCeEeccCCc-ccc--cCcccccCCCCCEEECCCCc-CCccCH-----HHHhCCCCCCEEEeeC
Confidence 999999999865 552 32223678999999999986 542211 2245566676666554
No 122
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.03 E-value=5.9e-09 Score=82.81 Aligned_cols=181 Identities=12% Similarity=-0.010 Sum_probs=107.7
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.++++++++...... .......+++|++|+++ .+..++.-. ......+++|+.|+++++..++.-. ......+++
T Consensus 32 ~l~~L~l~~n~l~~i--~~~~~~~l~~L~~L~l~-~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~ 106 (239)
T 2xwt_C 32 STQTLKLIETHLRTI--PSHAFSNLPNISRIYVS-IDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPL 106 (239)
T ss_dssp TCCEEEEESCCCSEE--CTTTTTTCTTCCEEEEE-CCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTT
T ss_pred cccEEEEeCCcceEE--CHHHccCCCCCcEEeCC-CCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCC
Confidence 478888877543211 11123468899999999 443233211 0112458899999998633444211 112346789
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCc---EEEcCCCCCCCCHHHHHHHHhcCCCCC-eEeccCCCCCCHHHHHHHHhc
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLK---ILNLCGCVKAATDYALQAIGRNCNQLQ-SLNLGWCEDVGDVGVMNLAYG 235 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~---~L~L~~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~i~~~~l~~l~~~ 235 (279)
|++|+++++ .++. +.. ...+++|+ +|+++++.. ++......+ ..+++|+ +|+++++. ++.... ..+..
T Consensus 107 L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~-l~~i~~~~~-~~l~~L~~~L~l~~n~-l~~i~~-~~~~~ 178 (239)
T 2xwt_C 107 LKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPY-MTSIPVNAF-QGLCNETLTLKLYNNG-FTSVQG-YAFNG 178 (239)
T ss_dssp CCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTT-CCEECTTTT-TTTBSSEEEEECCSCC-CCEECT-TTTTT
T ss_pred CCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcc-hhhcCcccc-cchhcceeEEEcCCCC-CcccCH-hhcCC
Confidence 999999886 3433 222 23567787 999998621 433221222 3588999 99998854 442111 12233
Q ss_pred CCCCCEEeccCCCCCChHHHHHHhhccccCc-ccccccccccccC
Q 023680 236 CPDLRSLDLCGCVCITGISSADVIIRPSRNC-CVVKRECSIGCFI 279 (279)
Q Consensus 236 ~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c-~~~~~~~~~~~~~ 279 (279)
++|++|++++|..++.... .....+ ++++.+++.++.+
T Consensus 179 -~~L~~L~L~~n~~l~~i~~-----~~~~~l~~~L~~L~l~~N~l 217 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVIDK-----DAFGGVYSGPSLLDVSQTSV 217 (239)
T ss_dssp -CEEEEEECTTCTTCCEECT-----TTTTTCSBCCSEEECTTCCC
T ss_pred -CCCCEEEcCCCCCcccCCH-----HHhhccccCCcEEECCCCcc
Confidence 7899999999854553222 224666 8888888877643
No 123
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.02 E-value=5.5e-08 Score=81.10 Aligned_cols=182 Identities=14% Similarity=0.050 Sum_probs=101.4
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHH-HHHHh--------------------hCCCCCeE
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAV-EAIAN--------------------SCHDLQDL 137 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l-~~l~~--------------------~~~~L~~L 137 (279)
..+++|+++++.... ........+++|++|++. .+ .++.... ..... ..++|+.|
T Consensus 123 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~l~-~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L 198 (332)
T 2ft3_A 123 SSLVELRIHDNRIRK--VPKGVFSGLRNMNCIEMG-GN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL 198 (332)
T ss_dssp TTCCEEECCSSCCCC--CCSGGGSSCSSCCEEECC-SC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCC
T ss_pred ccCCEEECCCCccCc--cCHhHhCCCccCCEEECC-CC-ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEE
Confidence 458888887654321 111223467888888887 33 3321100 00000 02466666
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEe
Q 023680 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLN 217 (279)
Q Consensus 138 ~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~ 217 (279)
+++++ .++..... ....+++|++|+++++ .++..... ....+++|++|+++++. ++. +..-...+++|+.|+
T Consensus 199 ~l~~n-~i~~~~~~-~l~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~--l~~--lp~~l~~l~~L~~L~ 270 (332)
T 2ft3_A 199 HLDHN-KIQAIELE-DLLRYSKLYRLGLGHN-QIRMIENG-SLSFLPTLRELHLDNNK--LSR--VPAGLPDLKLLQVVY 270 (332)
T ss_dssp BCCSS-CCCCCCTT-SSTTCTTCSCCBCCSS-CCCCCCTT-GGGGCTTCCEEECCSSC--CCB--CCTTGGGCTTCCEEE
T ss_pred ECCCC-cCCccCHH-HhcCCCCCCEEECCCC-cCCcCChh-HhhCCCCCCEEECCCCc--Cee--cChhhhcCccCCEEE
Confidence 66663 33322111 1345689999999885 44432111 12378999999999865 441 211134689999999
Q ss_pred ccCCCCCCHHHHHHHHh-----cCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 218 LGWCEDVGDVGVMNLAY-----GCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 218 l~~~~~i~~~~l~~l~~-----~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
++++. ++..+...+.. ..++|+.|++++|+ ++...+ .......++.++.++..++
T Consensus 271 l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~---~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 271 LHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEV---QPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGS---CGGGGTTBCCSTTEEC---
T ss_pred CCCCC-CCccChhHccccccccccccccceEeecCc-cccccc---Ccccccccchhhhhhcccc
Confidence 99864 55433222211 14679999999987 442222 2234577888888877665
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.00 E-value=4.7e-07 Score=69.40 Aligned_cols=96 Identities=14% Similarity=-0.001 Sum_probs=46.5
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHh
Q 023680 155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY 234 (279)
Q Consensus 155 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~ 234 (279)
..+++|++|+|+++ .++..... ....+++|++|+|+++. ++......+ ..+++|+.|+++++. ++... ...+.
T Consensus 51 ~~l~~L~~L~Ls~N-~i~~i~~~-~f~~l~~L~~L~Ls~N~--l~~i~~~~f-~~l~~L~~L~L~~N~-l~~~~-~~~~~ 123 (193)
T 2wfh_A 51 SNYKHLTLIDLSNN-RISTLSNQ-SFSNMTQLLTLILSYNR--LRCIPPRTF-DGLKSLRLLSLHGND-ISVVP-EGAFN 123 (193)
T ss_dssp GGCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC--CCBCCTTTT-TTCTTCCEEECCSSC-CCBCC-TTTTT
T ss_pred hcccCCCEEECCCC-cCCEeCHh-HccCCCCCCEEECCCCc--cCEeCHHHh-CCCCCCCEEECCCCC-CCeeC-hhhhh
Confidence 34556666666553 33221101 11245666777766643 332211122 246677777777643 33211 11234
Q ss_pred cCCCCCEEeccCCCCCChHHHHH
Q 023680 235 GCPDLRSLDLCGCVCITGISSAD 257 (279)
Q Consensus 235 ~~~~L~~L~l~~c~~i~~~~~~~ 257 (279)
.+++|++|++++|....+..+..
T Consensus 124 ~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 124 DLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp TCTTCCEEECCSSCEECSGGGHH
T ss_pred cCccccEEEeCCCCeecCCcCHH
Confidence 55777777777776544444433
No 125
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.99 E-value=6.1e-06 Score=74.49 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=56.7
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcC
Q 023680 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (279)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 236 (279)
.++|+.|+++++ .++. +. ..+++|+.|+++++. ++. +...+++|+.|++++|. ++. +...+.++
T Consensus 220 ~~~L~~L~Ls~N-~L~~--lp---~~l~~L~~L~Ls~N~--L~~-----lp~~~~~L~~L~Ls~N~-L~~--lp~~l~~l 283 (622)
T 3g06_A 220 PSGLKELIVSGN-RLTS--LP---VLPSELKELMVSGNR--LTS-----LPMLPSGLLSLSVYRNQ-LTR--LPESLIHL 283 (622)
T ss_dssp CTTCCEEECCSS-CCSC--CC---CCCTTCCEEECCSSC--CSC-----CCCCCTTCCEEECCSSC-CCS--CCGGGGGS
T ss_pred CCCCCEEEccCC-ccCc--CC---CCCCcCcEEECCCCC--CCc-----CCcccccCcEEeCCCCC-CCc--CCHHHhhc
Confidence 467888888775 4443 11 456788888888854 432 11156889999998864 552 33334678
Q ss_pred CCCCEEeccCCCCCChHHHHHHh
Q 023680 237 PDLRSLDLCGCVCITGISSADVI 259 (279)
Q Consensus 237 ~~L~~L~l~~c~~i~~~~~~~l~ 259 (279)
++|+.|++++|. +++.....+.
T Consensus 284 ~~L~~L~L~~N~-l~~~~~~~l~ 305 (622)
T 3g06_A 284 SSETTVNLEGNP-LSERTLQALR 305 (622)
T ss_dssp CTTCEEECCSCC-CCHHHHHHHH
T ss_pred cccCEEEecCCC-CCCcCHHHHH
Confidence 899999999987 7766665553
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.99 E-value=1.5e-07 Score=73.73 Aligned_cols=131 Identities=16% Similarity=0.093 Sum_probs=82.8
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcC
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC 210 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~ 210 (279)
.++|+.|+++++ .++.... .....+++|++|+|+++ .++...-. ....+++|++|+|+++. ++.-. ......+
T Consensus 31 ~~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~-~~~~l~~L~~L~Ls~N~--l~~l~-~~~f~~l 103 (220)
T 2v9t_B 31 PETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPD-AFQGLRSLNSLVLYGNK--ITELP-KSLFEGL 103 (220)
T ss_dssp CTTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSS-CCCEECTT-TTTTCSSCCEEECCSSC--CCCCC-TTTTTTC
T ss_pred CcCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHH-HhhCCcCCCEEECCCCc--CCccC-HhHccCC
Confidence 368999999984 4542211 12355789999999986 44432111 12367999999999865 44221 1223468
Q ss_pred CCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccccc
Q 023680 211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIG 276 (279)
Q Consensus 211 ~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~ 276 (279)
++|+.|+++++. ++..... .+..+++|++|++++|. ++.... .....++.++.++..+
T Consensus 104 ~~L~~L~L~~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~-----~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 104 FSLQLLLLNANK-INCLRVD-AFQDLHNLNLLSLYDNK-LQTIAK-----GTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp TTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CSCCCT-----TTTTTCTTCCEEECCS
T ss_pred CCCCEEECCCCC-CCEeCHH-HcCCCCCCCEEECCCCc-CCEECH-----HHHhCCCCCCEEEeCC
Confidence 999999999865 4432212 23567999999999986 443221 1235566666666554
No 127
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.98 E-value=1.3e-07 Score=79.90 Aligned_cols=166 Identities=19% Similarity=0.137 Sum_probs=96.4
Q ss_pred CCcEEEccCCCCcchHHHHHHcc-cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAP-KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
.++.|++++..... ....... .+++|+.|.++ ...++...- .....+++|+.|+|+++ .++... ......++
T Consensus 40 ~l~~L~Ls~N~l~~--l~~~~~~~~l~~L~~L~L~--~N~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~ 112 (361)
T 2xot_A 40 YTALLDLSHNNLSR--LRAEWTPTRLTNLHSLLLS--HNHLNFISS-EAFVPVPNLRYLDLSSN-HLHTLD-EFLFSDLQ 112 (361)
T ss_dssp TCSEEECCSSCCCE--ECTTSSSSCCTTCCEEECC--SSCCCEECT-TTTTTCTTCCEEECCSS-CCCEEC-TTTTTTCT
T ss_pred CCCEEECCCCCCCc--cChhhhhhcccccCEEECC--CCcCCccCh-hhccCCCCCCEEECCCC-cCCcCC-HHHhCCCc
Confidence 36788887754321 1111222 67899999998 334432111 11234789999999884 444211 11234578
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHH--HhcCCCCCeEeccCCCCCCHHHHHHHHhcC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAI--GRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 236 (279)
+|++|+|+++ .++..... ....+++|+.|+|+++. ++......+ ...+++|+.|+++++. ++......+ ..+
T Consensus 113 ~L~~L~L~~N-~i~~~~~~-~~~~l~~L~~L~L~~N~--l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~-~~l 186 (361)
T 2xot_A 113 ALEVLLLYNN-HIVVVDRN-AFEDMAQLQKLYLSQNQ--ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDL-QKL 186 (361)
T ss_dssp TCCEEECCSS-CCCEECTT-TTTTCTTCCEEECCSSC--CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHH-HHS
T ss_pred CCCEEECCCC-cccEECHH-HhCCcccCCEEECCCCc--CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHh-hhc
Confidence 9999999885 44432111 12367899999998865 443211111 1357899999998854 443222222 334
Q ss_pred CC--CCEEeccCCCCCChHHHHHH
Q 023680 237 PD--LRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 237 ~~--L~~L~l~~c~~i~~~~~~~l 258 (279)
++ |+.|++++|+...+..+..+
T Consensus 187 ~~~~l~~l~l~~N~~~C~C~l~~~ 210 (361)
T 2xot_A 187 PAWVKNGLYLHNNPLECDCKLYQL 210 (361)
T ss_dssp CHHHHTTEECCSSCEECCHHHHHH
T ss_pred cHhhcceEEecCCCccCCcCcHHH
Confidence 55 48899999887667666543
No 128
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.93 E-value=2.4e-07 Score=78.15 Aligned_cols=144 Identities=22% Similarity=0.188 Sum_probs=88.6
Q ss_pred CCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcC
Q 023680 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC 183 (279)
Q Consensus 104 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~ 183 (279)
.+.++.|+++ ...++......+...+++|+.|+|+++ .++...- .....+++|++|+|+++ .++... ......+
T Consensus 38 ~~~l~~L~Ls--~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l 111 (361)
T 2xot_A 38 PSYTALLDLS--HNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYLDLSSN-HLHTLD-EFLFSDL 111 (361)
T ss_dssp CTTCSEEECC--SSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSS-CCCEEC-TTTTTTC
T ss_pred CCCCCEEECC--CCCCCccChhhhhhcccccCEEECCCC-cCCccCh-hhccCCCCCCEEECCCC-cCCcCC-HHHhCCC
Confidence 3568999999 344443221112225899999999984 4543221 12346799999999986 454321 1122367
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHH--HhcCCCCCEEeccCCCCCChHHHHHH
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNL--AYGCPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l--~~~~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
++|++|+|+++. ++......+ ..+++|++|+++++. ++......+ ...+++|++|++++|. ++.-....+
T Consensus 112 ~~L~~L~L~~N~--i~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~ 183 (361)
T 2xot_A 112 QALEVLLLYNNH--IVVVDRNAF-EDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDL 183 (361)
T ss_dssp TTCCEEECCSSC--CCEECTTTT-TTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHH
T ss_pred cCCCEEECCCCc--ccEECHHHh-CCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHh
Confidence 999999999865 543322223 458999999999864 443211111 1457999999999986 655444333
No 129
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.93 E-value=6.2e-06 Score=74.45 Aligned_cols=77 Identities=16% Similarity=-0.021 Sum_probs=48.9
Q ss_pred CCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhcc
Q 023680 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRP 262 (279)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~ 262 (279)
.++|+.|+++++. ++.- ...+++|+.|+++++. ++. + ...+++|++|++++|. ++. + -..
T Consensus 220 ~~~L~~L~Ls~N~--L~~l-----p~~l~~L~~L~Ls~N~-L~~--l---p~~~~~L~~L~Ls~N~-L~~--l----p~~ 279 (622)
T 3g06_A 220 PSGLKELIVSGNR--LTSL-----PVLPSELKELMVSGNR-LTS--L---PMLPSGLLSLSVYRNQ-LTR--L----PES 279 (622)
T ss_dssp CTTCCEEECCSSC--CSCC-----CCCCTTCCEEECCSSC-CSC--C---CCCCTTCCEEECCSSC-CCS--C----CGG
T ss_pred CCCCCEEEccCCc--cCcC-----CCCCCcCcEEECCCCC-CCc--C---CcccccCcEEeCCCCC-CCc--C----CHH
Confidence 3677777777754 4331 1456788888888754 442 1 1256788888888875 541 1 122
Q ss_pred ccCcccccccccccccC
Q 023680 263 SRNCCVVKRECSIGCFI 279 (279)
Q Consensus 263 ~~~c~~~~~~~~~~~~~ 279 (279)
..+++.++.++..++.+
T Consensus 280 l~~l~~L~~L~L~~N~l 296 (622)
T 3g06_A 280 LIHLSSETTVNLEGNPL 296 (622)
T ss_dssp GGGSCTTCEEECCSCCC
T ss_pred HhhccccCEEEecCCCC
Confidence 46778888888877653
No 130
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.93 E-value=8.4e-08 Score=89.96 Aligned_cols=160 Identities=16% Similarity=0.038 Sum_probs=99.5
Q ss_pred cCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHc
Q 023680 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182 (279)
Q Consensus 103 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~ 182 (279)
..+++++|+++ ...++...... ...+++|+.|+++++.....-. ......+++|++|+|+++ .+.... ......
T Consensus 22 lp~~l~~LdLs--~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~-~~~f~~L~~L~~L~Ls~N-~l~~~~-p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLS--FNYIRTVTASS-FPFLEQLQLLELGSQYTPLTID-KEAFRNLPNLRILDLGSS-KIYFLH-PDAFQG 95 (844)
T ss_dssp SCTTCCEEEEE--SCCCCEECSSS-CSSCCSCSEEEECTTCCCCEEC-TTTTSSCTTCCEEECTTC-CCCEEC-TTSSCS
T ss_pred CCCCcCEEECC--CCcCCccChhH-CcccccCeEEeCCCCCCccccC-HHHhcCCCCCCEEECCCC-cCcccC-HhHccC
Confidence 34789999999 33444221111 2458999999999863322110 122466899999999986 444321 112236
Q ss_pred CCCCcEEEcCCCCCCCCHHHHHH-HHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCh---HHHHHH
Q 023680 183 CRKLKILNLCGCVKAATDYALQA-IGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITG---ISSADV 258 (279)
Q Consensus 183 ~~~L~~L~L~~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~---~~~~~l 258 (279)
+++|++|+++++. +++..... ....+++|++|+++++. ++.......+.++++|++|++++|. ++. ..+..+
T Consensus 96 l~~L~~L~Ls~n~--l~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~~~l~~l 171 (844)
T 3j0a_A 96 LFHLFELRLYFCG--LSDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHELEPL 171 (844)
T ss_dssp CSSCCCEECTTCC--CSSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSC-CCCCCSGGGHHH
T ss_pred CcccCEeeCcCCC--CCcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCc-CCeeCHHHcccc
Confidence 8999999999976 44432222 23468999999999965 4443222345788999999999986 433 344333
Q ss_pred hhccccCccccccccccccc
Q 023680 259 IIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 259 ~~~~~~~c~~~~~~~~~~~~ 278 (279)
.. +.++.++..+|.
T Consensus 172 ~~------~~L~~L~L~~n~ 185 (844)
T 3j0a_A 172 QG------KTLSFFSLAANS 185 (844)
T ss_dssp HH------CSSCCCEECCSB
T ss_pred cC------CccceEECCCCc
Confidence 11 456666555553
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.90 E-value=3.2e-07 Score=70.26 Aligned_cols=37 Identities=27% Similarity=0.121 Sum_probs=16.5
Q ss_pred CCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 210 ~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
+++|++|+++++. ++... ...+..+++|++|++++|.
T Consensus 101 l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 101 LHQLKTLNLYDNQ-ISCVM-PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp CTTCCEEECCSSC-CCEEC-TTSSTTCTTCCEEECTTCC
T ss_pred CCCCCEEECCCCc-CCeeC-HHHhhcCCCCCEEEeCCCC
Confidence 4555555555532 22211 0112334555666665554
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.89 E-value=2e-06 Score=76.92 Aligned_cols=104 Identities=23% Similarity=0.261 Sum_probs=67.5
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCC
Q 023680 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (279)
Q Consensus 132 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (279)
..|+.|+++++ .++. +.. ...+++|+.|+|+++ .++ .++.....+++|+.|+|+++. ++. +..+ ..++
T Consensus 441 ~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~--l~~--lp~l-~~l~ 508 (567)
T 1dce_A 441 ADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDNA--LEN--VDGV-ANLP 508 (567)
T ss_dssp TTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSSC--CCC--CGGG-TTCS
T ss_pred cCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCCC--CCC--Cccc-CCCC
Confidence 46888888874 4443 233 455788888888875 444 233334467888888888854 443 2233 4578
Q ss_pred CCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 212 ~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
+|+.|+++++. ++.......+..+++|+.|++++|.
T Consensus 509 ~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 509 RLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp SCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred CCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 88888888854 5442202234667888999998876
No 133
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=1.6e-06 Score=77.50 Aligned_cols=81 Identities=25% Similarity=0.252 Sum_probs=35.8
Q ss_pred CCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHH-HHHHHhc
Q 023680 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA-LQAIGRN 209 (279)
Q Consensus 131 ~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~-~~~l~~~ 209 (279)
+++|+.|+|+++ .++ .+......+++|+.|+|+++ .++. ++ -...+++|+.|+|+++. ++... ...+ ..
T Consensus 462 l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N-~l~~--lp-~l~~l~~L~~L~Ls~N~--l~~~~~p~~l-~~ 531 (567)
T 1dce_A 462 LLLVTHLDLSHN-RLR--ALPPALAALRCLEVLQASDN-ALEN--VD-GVANLPRLQELLLCNNR--LQQSAAIQPL-VS 531 (567)
T ss_dssp GTTCCEEECCSS-CCC--CCCGGGGGCTTCCEEECCSS-CCCC--CG-GGTTCSSCCEEECCSSC--CCSSSTTGGG-GG
T ss_pred cccCcEeecCcc-ccc--ccchhhhcCCCCCEEECCCC-CCCC--Cc-ccCCCCCCcEEECCCCC--CCCCCCcHHH-hc
Confidence 555555555553 333 12222334555555555553 3332 22 12245555555555533 32221 1122 23
Q ss_pred CCCCCeEeccCC
Q 023680 210 CNQLQSLNLGWC 221 (279)
Q Consensus 210 ~~~L~~L~l~~~ 221 (279)
+++|+.|+++++
T Consensus 532 l~~L~~L~L~~N 543 (567)
T 1dce_A 532 CPRLVLLNLQGN 543 (567)
T ss_dssp CTTCCEEECTTS
T ss_pred CCCCCEEEecCC
Confidence 555555555553
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.80 E-value=1.8e-06 Score=65.01 Aligned_cols=88 Identities=18% Similarity=0.073 Sum_probs=44.0
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhc
Q 023680 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG 235 (279)
Q Consensus 156 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~ 235 (279)
.+++|++|+++++ .++... ......+++|++|+++++. ++.... .....+++|+.|+++++. ++... ..++..
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~--l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~ 122 (177)
T 2o6r_A 50 KLTQLTKLSLSQN-QIQSLP-DGVFDKLTKLTILYLHENK--LQSLPN-GVFDKLTQLKELALDTNQ-LKSVP-DGIFDR 122 (177)
T ss_dssp TCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSC-CSCCC-TTTTTT
T ss_pred CcccccEEECCCC-cceEeC-hhHccCCCccCEEECCCCC--ccccCH-HHhhCCcccCEEECcCCc-ceEeC-HHHhcC
Confidence 3456666666554 332110 0111245667777776643 332111 112346777777777653 33211 122345
Q ss_pred CCCCCEEeccCCCCC
Q 023680 236 CPDLRSLDLCGCVCI 250 (279)
Q Consensus 236 ~~~L~~L~l~~c~~i 250 (279)
+++|++|++++|...
T Consensus 123 l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 123 LTSLQKIWLHTNPWD 137 (177)
T ss_dssp CTTCCEEECCSSCBC
T ss_pred CcccCEEEecCCCee
Confidence 677777777777633
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.76 E-value=2.5e-06 Score=78.56 Aligned_cols=111 Identities=23% Similarity=0.124 Sum_probs=68.8
Q ss_pred HhhCCCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHH
Q 023680 128 ANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIG 207 (279)
Q Consensus 128 ~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~ 207 (279)
...+++|+.|+|+++ .+. .+..-...+++|++|+|+++ .++ .+..-...+++|+.|+|+++. ++ .+..-.
T Consensus 220 ~~~l~~L~~L~Ls~n-~l~--~l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~--l~--~lp~~~ 289 (727)
T 4b8c_D 220 KYDDQLWHALDLSNL-QIF--NISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR--LT--SLPAEL 289 (727)
T ss_dssp --CCCCCCEEECTTS-CCS--CCCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC--CS--SCCSSG
T ss_pred hccCCCCcEEECCCC-CCC--CCChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc--CC--ccChhh
Confidence 344788888888874 333 11111225788899998875 454 232223467889999998865 44 121112
Q ss_pred hcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCCh
Q 023680 208 RNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITG 252 (279)
Q Consensus 208 ~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~ 252 (279)
..+++|+.|+|+++. ++. +..-+..+++|+.|+|++|. ++.
T Consensus 290 ~~l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~-l~~ 330 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNP-LEK 330 (727)
T ss_dssp GGGTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSC-CCS
T ss_pred cCCCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCc-cCC
Confidence 457889999998864 442 22224667889999999876 553
No 136
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.72 E-value=1.2e-05 Score=64.59 Aligned_cols=38 Identities=16% Similarity=0.330 Sum_probs=34.9
Q ss_pred CCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhcC
Q 023680 42 EWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (279)
Q Consensus 42 ~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~~ 79 (279)
.|++||+|++.+||+||+++|+++++.|||+|+.++..
T Consensus 4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcc
Confidence 47889999999999999999999999999999988633
No 137
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.70 E-value=1.3e-05 Score=69.72 Aligned_cols=13 Identities=15% Similarity=0.041 Sum_probs=5.8
Q ss_pred cCCCCCEEeccCC
Q 023680 235 GCPDLRSLDLCGC 247 (279)
Q Consensus 235 ~~~~L~~L~l~~c 247 (279)
.+++|++|++++|
T Consensus 235 ~l~~L~~L~l~~N 247 (454)
T 1jl5_A 235 NLPFLTTIYADNN 247 (454)
T ss_dssp TCTTCCEEECCSS
T ss_pred CCCCCCEEECCCC
Confidence 3344444444443
No 138
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.69 E-value=6.5e-06 Score=73.48 Aligned_cols=41 Identities=2% Similarity=-0.125 Sum_probs=19.4
Q ss_pred CeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHH
Q 023680 214 QSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADV 258 (279)
Q Consensus 214 ~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l 258 (279)
+.|++++|. ++. +..-+..+++|+.|++++|. ++......+
T Consensus 210 ~~L~Ls~N~-l~~--lp~~l~~l~~L~~L~L~~N~-l~~~~p~~l 250 (571)
T 3cvr_A 210 IFFRCRENR-ITH--IPENILSLDPTCTIILEDNP-LSSRIRESL 250 (571)
T ss_dssp EEEECCSSC-CCC--CCGGGGGSCTTEEEECCSSS-CCHHHHHHH
T ss_pred eEEecCCCc-cee--cCHHHhcCCCCCEEEeeCCc-CCCcCHHHH
Confidence 555555533 332 11112235666666666655 544443333
No 139
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.66 E-value=3.1e-05 Score=62.64 Aligned_cols=40 Identities=23% Similarity=0.498 Sum_probs=36.3
Q ss_pred CCCCCCCCHHHHHHHcccCChhHHH-HHHhcChhHHHhhcC
Q 023680 40 ITEWKDIPMELLLRILSLVDEPTVI-VASGVCSGWRDAICL 79 (279)
Q Consensus 40 ~~~~~~Lp~~il~~I~~~L~~~~l~-~~~~vc~~w~~~~~~ 79 (279)
...+..||+|++..||.+|+.++++ +++.|||+|+.++..
T Consensus 48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~ 88 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDG 88 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTS
T ss_pred ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcC
Confidence 4578899999999999999999999 999999999998643
No 140
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.66 E-value=7.3e-05 Score=59.92 Aligned_cols=83 Identities=27% Similarity=0.307 Sum_probs=39.5
Q ss_pred hcCCCCCEEEecCCCCCCH-HHHHHHHHcCCCCcEEEcCCCCCCCCHH-HHHHHHhcCCCCCeEeccCCCCCCH------
Q 023680 155 HGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKAATDY-ALQAIGRNCNQLQSLNLGWCEDVGD------ 226 (279)
Q Consensus 155 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~i~~------ 226 (279)
+.+|+|+.|+|+++ .++. .++..+...+++|+.|+|++.. +++. .+..+. .+ +|++|++++++ ++.
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~--i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE--LKSERELDKIK-GL-KLEELWLDGNS-LCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC--CCSGGGGGGGT-TS-CCSEEECTTST-TGGGCSSHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc--cCCchhhhhcc-cC-CcceEEccCCc-CccccCcch
Confidence 44566666666654 3332 2233333456666666666533 3332 222221 12 56666666544 321
Q ss_pred HHHHHHHhcCCCCCEEe
Q 023680 227 VGVMNLAYGCPDLRSLD 243 (279)
Q Consensus 227 ~~l~~l~~~~~~L~~L~ 243 (279)
.....+...+|+|+.||
T Consensus 241 ~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 241 TYISAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHHHHCTTCCEES
T ss_pred hHHHHHHHHCcccCeEC
Confidence 22334445556666665
No 141
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.59 E-value=2e-05 Score=68.57 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=32.3
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCC
Q 023680 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (279)
Q Consensus 132 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (279)
++|+.|+++++ .++. +.. ...+++|++|+++++ .++. +. ...++|++|+++++. ++. +..+ ..++
T Consensus 173 ~~L~~L~L~~n-~l~~--l~~-~~~l~~L~~L~l~~N-~l~~--l~---~~~~~L~~L~l~~n~--l~~--lp~~-~~l~ 237 (454)
T 1jl5_A 173 PSLEFIAAGNN-QLEE--LPE-LQNLPFLTAIYADNN-SLKK--LP---DLPLSLESIVAGNNI--LEE--LPEL-QNLP 237 (454)
T ss_dssp TTCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSS-CCSS--CC---CCCTTCCEEECCSSC--CSS--CCCC-TTCT
T ss_pred ccccEEECcCC-cCCc--Ccc-ccCCCCCCEEECCCC-cCCc--CC---CCcCcccEEECcCCc--CCc--cccc-CCCC
Confidence 35555555553 2222 111 234555666666554 2221 00 112355555555543 221 1112 2455
Q ss_pred CCCeEeccCC
Q 023680 212 QLQSLNLGWC 221 (279)
Q Consensus 212 ~L~~L~l~~~ 221 (279)
+|++|+++++
T Consensus 238 ~L~~L~l~~N 247 (454)
T 1jl5_A 238 FLTTIYADNN 247 (454)
T ss_dssp TCCEEECCSS
T ss_pred CCCEEECCCC
Confidence 6666666654
No 142
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.54 E-value=1.2e-05 Score=71.80 Aligned_cols=161 Identities=14% Similarity=0.002 Sum_probs=95.2
Q ss_pred CCCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCC
Q 023680 79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP 158 (279)
Q Consensus 79 ~~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~ 158 (279)
+.+++|+++++.... +. ..+++|++|+++ .+ .++. +.. -..+|+.|+++++ .++. +.. .++
T Consensus 80 ~~L~~L~Ls~N~l~~---ip---~~l~~L~~L~Ls-~N-~l~~--ip~---l~~~L~~L~Ls~N-~l~~--lp~---~l~ 140 (571)
T 3cvr_A 80 PQITVLEITQNALIS---LP---ELPASLEYLDAC-DN-RLST--LPE---LPASLKHLDVDNN-QLTM--LPE---LPA 140 (571)
T ss_dssp TTCSEEECCSSCCSC---CC---CCCTTCCEEECC-SS-CCSC--CCC---CCTTCCEEECCSS-CCSC--CCC---CCT
T ss_pred CCCCEEECcCCCCcc---cc---cccCCCCEEEcc-CC-CCCC--cch---hhcCCCEEECCCC-cCCC--CCC---cCc
Confidence 458888888764332 11 457899999998 33 3432 111 1238999999884 4443 222 578
Q ss_pred CCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHH-H-HHHHhcC
Q 023680 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVG-V-MNLAYGC 236 (279)
Q Consensus 159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~-l-~~l~~~~ 236 (279)
+|+.|+++++ .++. +.. .+++|++|+++++. ++. +..+ .++|+.|+++++. ++.-. + ..+....
T Consensus 141 ~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~--L~~--lp~l---~~~L~~L~Ls~N~-L~~lp~~~~~L~~~~ 206 (571)
T 3cvr_A 141 LLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQ--LTF--LPEL---PESLEALDVSTNL-LESLPAVPVRNHHSE 206 (571)
T ss_dssp TCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC--CSC--CCCC---CTTCCEEECCSSC-CSSCCCCC-------
T ss_pred cccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCC--CCC--cchh---hCCCCEEECcCCC-CCchhhHHHhhhccc
Confidence 9999999886 4443 221 56889999999865 443 1112 2789999998864 44210 0 0111222
Q ss_pred CCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 237 PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 237 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
+.|+.|++++|. ++. + -.....++.++.++..++.+
T Consensus 207 ~~L~~L~Ls~N~-l~~--l----p~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 207 ETEIFFRCRENR-ITH--I----PENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp -CCEEEECCSSC-CCC--C----CGGGGGSCTTEEEECCSSSC
T ss_pred ccceEEecCCCc-cee--c----CHHHhcCCCCCEEEeeCCcC
Confidence 344999999976 552 1 11234477888888777643
No 143
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.46 E-value=1.7e-05 Score=73.02 Aligned_cols=110 Identities=17% Similarity=0.079 Sum_probs=74.6
Q ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHH
Q 023680 153 LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNL 232 (279)
Q Consensus 153 l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l 232 (279)
....+++|+.|+|+++ .+.. +..-...+++|++|+|+++. ++ .+..-...+++|+.|+|+++. ++ .+..-
T Consensus 219 ~~~~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~ 288 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNGNS--LT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAE 288 (727)
T ss_dssp ---CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTTSC--CS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSS
T ss_pred hhccCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeCCc--Cc--ccChhhhCCCCCCEEeCcCCc-CC--ccChh
Confidence 3556789999999986 4432 22112268999999999965 54 222212468999999999965 55 23333
Q ss_pred HhcCCCCCEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 233 AYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 233 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
+.++++|++|+|++|. ++. +-.....++.|+.++..++.+
T Consensus 289 ~~~l~~L~~L~L~~N~-l~~------lp~~~~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 289 LGSCFQLKYFYFFDNM-VTT------LPWEFGNLCNLQFLGVEGNPL 328 (727)
T ss_dssp GGGGTTCSEEECCSSC-CCC------CCSSTTSCTTCCCEECTTSCC
T ss_pred hcCCCCCCEEECCCCC-CCc------cChhhhcCCCccEEeCCCCcc
Confidence 4678999999999986 541 122357888999998887753
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.44 E-value=0.00024 Score=56.92 Aligned_cols=89 Identities=27% Similarity=0.312 Sum_probs=61.3
Q ss_pred HHHHhhCCCCCeEecCCCCCCCH-HHHHHHHhcCCCCCEEEecCCCCCCHH-HHHHHHHcCCCCcEEEcCCCCCCCCH--
Q 023680 125 EAIANSCHDLQDLDLSKSFKLSD-RSLYALAHGCPNLTRLNISGCTSFSDH-ALAYLCGFCRKLKILNLCGCVKAATD-- 200 (279)
Q Consensus 125 ~~l~~~~~~L~~L~L~~~~~~~~-~~l~~l~~~~~~L~~L~L~~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~~~-- 200 (279)
..+...+++|++|+|+++ .++. ..+..+...+|+|+.|+|+++ .+++. .+..+. .+ +|++|+|++.. +..
T Consensus 163 ~i~~~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~~l~~l~-~l-~L~~L~L~~Np--l~~~~ 236 (267)
T 3rw6_A 163 RIIEENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSERELDKIK-GL-KLEELWLDGNS--LCDTF 236 (267)
T ss_dssp HHHHHHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGGGGGGGT-TS-CCSEEECTTST--TGGGC
T ss_pred HHHHhhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCchhhhhcc-cC-CcceEEccCCc--Ccccc
Confidence 344466999999999995 4543 345556677899999999985 55543 233222 22 89999999965 553
Q ss_pred ---HHH-HHHHhcCCCCCeEecc
Q 023680 201 ---YAL-QAIGRNCNQLQSLNLG 219 (279)
Q Consensus 201 ---~~~-~~l~~~~~~L~~L~l~ 219 (279)
..+ ..+...+|+|+.||=.
T Consensus 237 ~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 237 RDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp SSHHHHHHHHHHHCTTCCEESSC
T ss_pred CcchhHHHHHHHHCcccCeECCc
Confidence 233 3456679999999854
No 145
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.40 E-value=1.3e-05 Score=60.20 Aligned_cols=109 Identities=11% Similarity=-0.010 Sum_probs=68.9
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcC
Q 023680 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (279)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 236 (279)
.++|++|+++++ .++... ......+++|++|+++++. ++.... .....+++|+.|+++++. ++... ...+..+
T Consensus 27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~~-~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l 99 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSQNQ--IQSLPD-GVFDKLTKLTILYLHENK-LQSLP-NGVFDKL 99 (177)
T ss_dssp CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTC
T ss_pred CCCCcEEEeCCC-cccEeC-HHHhcCcccccEEECCCCc--ceEeCh-hHccCCCccCEEECCCCC-ccccC-HHHhhCC
Confidence 368888988875 443211 1122367999999999865 442211 122468999999999864 54321 1223567
Q ss_pred CCCCEEeccCCCCCChHHHHHHhhccccCccccccccccccc
Q 023680 237 PDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCF 278 (279)
Q Consensus 237 ~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~ 278 (279)
++|++|++++|. ++... ......++.++.++..++.
T Consensus 100 ~~L~~L~l~~N~-l~~~~-----~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 100 TQLKELALDTNQ-LKSVP-----DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp TTCCEEECCSSC-CSCCC-----TTTTTTCTTCCEEECCSSC
T ss_pred cccCEEECcCCc-ceEeC-----HHHhcCCcccCEEEecCCC
Confidence 999999999986 55221 1223667788877776653
No 146
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.40 E-value=1.3e-05 Score=61.32 Aligned_cols=105 Identities=18% Similarity=0.181 Sum_probs=67.1
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
++|++|+++++ .++. +......+++|+.|+++++. ++......+ ..+++|++|+++++. ++...-. .+.+++
T Consensus 31 ~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~--i~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~-~f~~l~ 102 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR--ISTLSNQSF-SNMTQLLTLILSYNR-LRCIPPR-TFDGLK 102 (193)
T ss_dssp TTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC--CCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTT-TTTTCT
T ss_pred CCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc--CCEeCHhHc-cCCCCCCEEECCCCc-cCEeCHH-HhCCCC
Confidence 57889999875 4442 22233478999999999865 543322223 458999999999865 4432211 235679
Q ss_pred CCCEEeccCCCCCChHHHHHHhhccccCccccccccccc
Q 023680 238 DLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIG 276 (279)
Q Consensus 238 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~ 276 (279)
+|++|++++|. ++... .......+.++.++..+
T Consensus 103 ~L~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 103 SLRLLSLHGND-ISVVP-----EGAFNDLSALSHLAIGA 135 (193)
T ss_dssp TCCEEECCSSC-CCBCC-----TTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCC-CCeeC-----hhhhhcCccccEEEeCC
Confidence 99999999986 54211 12234566666665554
No 147
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.37 E-value=4.2e-06 Score=63.95 Aligned_cols=108 Identities=17% Similarity=0.129 Sum_probs=65.0
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
++|++|+++++ .++..........+++|++|+++++. ++......+ ..+++|++|+++++. ++..... .+.+++
T Consensus 29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~ 102 (192)
T 1w8a_A 29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ--LTGIEPNAF-EGASHIQELQLGENK-IKEISNK-MFLGLH 102 (192)
T ss_dssp TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC--CCCBCTTTT-TTCTTCCEEECCSCC-CCEECSS-SSTTCT
T ss_pred CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC--CCCcCHhHc-CCcccCCEEECCCCc-CCccCHH-HhcCCC
Confidence 37788888775 34321111123467889999998855 443222223 357889999998854 4432211 135679
Q ss_pred CCCEEeccCCCCCChHHHHHHhhccccCcccccccccccc
Q 023680 238 DLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGC 277 (279)
Q Consensus 238 ~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~ 277 (279)
+|++|++++|. ++... .......+.++.++..+.
T Consensus 103 ~L~~L~L~~N~-l~~~~-----~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 103 QLKTLNLYDNQ-ISCVM-----PGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp TCCEEECCSSC-CCEEC-----TTSSTTCTTCCEEECTTC
T ss_pred CCCEEECCCCc-CCeeC-----HHHhhcCCCCCEEEeCCC
Confidence 99999999986 55422 223455667776666553
No 148
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.27 E-value=0.0001 Score=63.70 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=37.1
Q ss_pred CCCCCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhcC
Q 023680 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL 79 (279)
Q Consensus 39 ~~~~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~~ 79 (279)
..+.+..||+|++.+||+||+.+++.++++|||+|+.++..
T Consensus 11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence 34678899999999999999999999999999999988754
No 149
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.06 E-value=0.00047 Score=59.27 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=36.6
Q ss_pred CCCCCCCCCHHHHHHHcccCChhHHHHHHhcChhHHHhhc
Q 023680 39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78 (279)
Q Consensus 39 ~~~~~~~Lp~~il~~I~~~L~~~~l~~~~~vc~~w~~~~~ 78 (279)
..+.+..||+|++.+||+||+..++.+++.|||+|+.++.
T Consensus 15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence 3567999999999999999999999999999999998764
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.97 E-value=7.1e-05 Score=55.82 Aligned_cols=84 Identities=13% Similarity=0.006 Sum_probs=39.0
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
++|++|+|+++ .++... ......+++|++|+|+++. ++...- .....+++|++|+++++. ++... ...+..++
T Consensus 30 ~~l~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~--l~~l~~-~~f~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~ 102 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLE-PGVFDRLTQLTRLDLDNNQ--LTVLPA-GVFDKLTQLTQLSLNDNQ-LKSIP-RGAFDNLK 102 (170)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCT
T ss_pred CCCcEEEcCCC-cCCccC-hhhhcCcccCCEEECCCCC--cCccCh-hhccCCCCCCEEECCCCc-cCEeC-HHHhcCCC
Confidence 45666666553 332210 1111245666666666643 331111 112345666666666643 33211 11234556
Q ss_pred CCCEEeccCCC
Q 023680 238 DLRSLDLCGCV 248 (279)
Q Consensus 238 ~L~~L~l~~c~ 248 (279)
+|++|++++|.
T Consensus 103 ~L~~L~L~~N~ 113 (170)
T 3g39_A 103 SLTHIWLLNNP 113 (170)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 67777777665
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.95 E-value=7.8e-05 Score=55.86 Aligned_cols=86 Identities=13% Similarity=0.038 Sum_probs=41.5
Q ss_pred CCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCC
Q 023680 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237 (279)
Q Consensus 158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~ 237 (279)
++|++|+|+++ .++... ......+++|++|+|+++. ++.-. ......+++|+.|+++++. ++... ...+..++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N~--l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~-~~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSNK--LTAIP-TGVFDKLTQLTQLDLNDNH-LKSIP-RGAFDNLK 105 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCT
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCCC--CCccC-hhHhCCcchhhEEECCCCc-cceeC-HHHhcccc
Confidence 45666666553 232210 1112245666666666643 33211 1122346677777776643 33211 11234567
Q ss_pred CCCEEeccCCCCC
Q 023680 238 DLRSLDLCGCVCI 250 (279)
Q Consensus 238 ~L~~L~l~~c~~i 250 (279)
+|++|++++|...
T Consensus 106 ~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 106 SLTHIYLYNNPWD 118 (174)
T ss_dssp TCSEEECCSSCBC
T ss_pred CCCEEEeCCCCcc
Confidence 7777777776633
No 152
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.90 E-value=0.00013 Score=60.39 Aligned_cols=124 Identities=23% Similarity=0.202 Sum_probs=67.6
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCC
Q 023680 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (279)
Q Consensus 132 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (279)
.++..+.+.+ .+....+..+...|++|+.|+|+++ .++.-+-. ...+|++|++|++...-..+.+.+ +..|+
T Consensus 202 ~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~-aF~~~~~L~~l~l~~ni~~I~~~a----F~~~~ 273 (329)
T 3sb4_A 202 RDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKT-NATTIPDF-TFAQKKYLLKIKLPHNLKTIGQRV----FSNCG 273 (329)
T ss_dssp GGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTT-TTTTCTTCCEEECCTTCCEECTTT----TTTCT
T ss_pred cccceEEEee--eecHHHHHHHHHhcCCCeEEECCCC-CcceecHh-hhhCCCCCCEEECCcccceehHHH----hhCCh
Confidence 3445555544 2555666666666788888888763 22211111 112677888888876321122222 24577
Q ss_pred CCC-eEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccc
Q 023680 212 QLQ-SLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRE 272 (279)
Q Consensus 212 ~L~-~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~ 272 (279)
+|+ .+++.+. ++.-+- ..+.+|++|+.|+++++. ++.-+ ..+...|+.|+.+
T Consensus 274 ~L~~~l~l~~~--l~~I~~-~aF~~c~~L~~l~l~~n~-i~~I~-----~~aF~~~~~L~~l 326 (329)
T 3sb4_A 274 RLAGTLELPAS--VTAIEF-GAFMGCDNLRYVLATGDK-ITTLG-----DELFGNGVPSKLI 326 (329)
T ss_dssp TCCEEEEECTT--CCEECT-TTTTTCTTEEEEEECSSC-CCEEC-----TTTTCTTCCCCEE
T ss_pred hccEEEEEccc--ceEEch-hhhhCCccCCEEEeCCCc-cCccc-----hhhhcCCcchhhh
Confidence 788 8888652 222111 224677888888886643 43322 2234777777654
No 153
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.83 E-value=0.00025 Score=60.83 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=35.6
Q ss_pred CCCCCCCCHH----HHHHHcccCChhHHHHHHhcChhHHHhhc
Q 023680 40 ITEWKDIPME----LLLRILSLVDEPTVIVASGVCSGWRDAIC 78 (279)
Q Consensus 40 ~~~~~~Lp~~----il~~I~~~L~~~~l~~~~~vc~~w~~~~~ 78 (279)
.+.+..||+| ++.+||+||+..++.++++|||+|+.++.
T Consensus 8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHH
T ss_pred cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 4667889999 99999999999999999999999998763
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.02 E-value=0.00068 Score=50.64 Aligned_cols=84 Identities=15% Similarity=0.064 Sum_probs=41.8
Q ss_pred CCCCeEecCCCCCCCHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCC
Q 023680 132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN 211 (279)
Q Consensus 132 ~~L~~L~L~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~ 211 (279)
++|+.|+|+++ .++... ......+++|++|+|+++ .++.-. ..+...+++|++|+|+++. ++...- .....++
T Consensus 33 ~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~--l~~l~~-~~~~~l~ 105 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLE-PGVFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDNH--LKSIPR-GAFDNLK 105 (174)
T ss_dssp TTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCCT-TTTTTCT
T ss_pred CCCcEEEeCCC-CccccC-HHHhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCCc--cceeCH-HHhcccc
Confidence 45566666553 222110 111234566777777664 333210 1112356777777777744 332111 1123467
Q ss_pred CCCeEeccCCC
Q 023680 212 QLQSLNLGWCE 222 (279)
Q Consensus 212 ~L~~L~l~~~~ 222 (279)
+|+.|+++++.
T Consensus 106 ~L~~L~L~~N~ 116 (174)
T 2r9u_A 106 SLTHIYLYNNP 116 (174)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEEeCCCC
Confidence 78888887754
No 155
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=95.97 E-value=0.00073 Score=50.20 Aligned_cols=62 Identities=18% Similarity=0.056 Sum_probs=31.2
Q ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCC
Q 023680 156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE 222 (279)
Q Consensus 156 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 222 (279)
.+++|++|+|+++ .++... ......+++|++|+|++.. ++...- .....+++|+.|+++++.
T Consensus 52 ~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~--l~~~~~-~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 52 RLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDNQ--LKSIPR-GAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCCc--cCEeCH-HHhcCCCCCCEEEeCCCC
Confidence 4556666666654 333110 1111345677777776643 332111 112346777777777754
No 156
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.82 E-value=7.7e-06 Score=68.57 Aligned_cols=62 Identities=21% Similarity=0.105 Sum_probs=37.2
Q ss_pred CCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCCCCC
Q 023680 184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT 251 (279)
Q Consensus 184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~ 251 (279)
..++.|++++.. ++.-... .. ..++|++|++.++..++.-.- ..+.++++|++|++++|. ++
T Consensus 154 ~~l~~L~L~~N~--i~~i~~~-~f-~~~~L~~l~l~~~n~l~~i~~-~~f~~l~~L~~LdLs~N~-l~ 215 (350)
T 4ay9_X 154 FESVILWLNKNG--IQEIHNS-AF-NGTQLDELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IH 215 (350)
T ss_dssp SSCEEEECCSSC--CCEECTT-SS-TTEEEEEEECTTCTTCCCCCT-TTTTTEECCSEEECTTSC-CC
T ss_pred hhhhhhcccccc--ccCCChh-hc-cccchhHHhhccCCcccCCCH-HHhccCcccchhhcCCCC-cC
Confidence 457788887744 4321111 11 246788888876554444211 223667899999999985 44
No 157
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.80 E-value=0.0011 Score=55.21 Aligned_cols=14 Identities=29% Similarity=0.242 Sum_probs=7.2
Q ss_pred CCEEeccCCCCCCh
Q 023680 239 LRSLDLCGCVCITG 252 (279)
Q Consensus 239 L~~L~l~~c~~i~~ 252 (279)
|+.|++.+|....+
T Consensus 105 L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 105 LQELVLSGNPLHCS 118 (347)
T ss_dssp CCEEECCSSCCCCC
T ss_pred ceEEEeeCCCccCC
Confidence 55555555553333
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=95.64 E-value=0.003 Score=52.16 Aligned_cols=104 Identities=16% Similarity=0.208 Sum_probs=68.7
Q ss_pred CCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcC
Q 023680 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC 236 (279)
Q Consensus 157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~ 236 (279)
..++..+.+.+ .+....+..+...|++|+.|+|+++. ++.-.-.+ +..|++|++|++.++ ++.-+- ..+.+|
T Consensus 201 ~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~--i~~I~~~a-F~~~~~L~~l~l~~n--i~~I~~-~aF~~~ 272 (329)
T 3sb4_A 201 PRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN--ATTIPDFT-FAQKKYLLKIKLPHN--LKTIGQ-RVFSNC 272 (329)
T ss_dssp GGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC--CCEECTTT-TTTCTTCCEEECCTT--CCEECT-TTTTTC
T ss_pred ccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC--cceecHhh-hhCCCCCCEEECCcc--cceehH-HHhhCC
Confidence 34677777776 45667777777779999999998743 33222222 356899999999774 333221 224788
Q ss_pred CCCC-EEeccCCCCCChHHHHHHhhccccCcccccccccc
Q 023680 237 PDLR-SLDLCGCVCITGISSADVIIRPSRNCCVVKRECSI 275 (279)
Q Consensus 237 ~~L~-~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~ 275 (279)
++|+ .+++.+ .++.- -..+...|+.|+.+...
T Consensus 273 ~~L~~~l~l~~--~l~~I-----~~~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 273 GRLAGTLELPA--SVTAI-----EFGAFMGCDNLRYVLAT 305 (329)
T ss_dssp TTCCEEEEECT--TCCEE-----CTTTTTTCTTEEEEEEC
T ss_pred hhccEEEEEcc--cceEE-----chhhhhCCccCCEEEeC
Confidence 9999 999987 24322 23446888888887653
No 159
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.33 E-value=0.00091 Score=57.05 Aligned_cols=55 Identities=15% Similarity=0.085 Sum_probs=27.8
Q ss_pred cCCCCCeEeccCCCC-------CCHHHHHHHHhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccc
Q 023680 209 NCNQLQSLNLGWCED-------VGDVGVMNLAYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECS 274 (279)
Q Consensus 209 ~~~~L~~L~l~~~~~-------i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~ 274 (279)
.|++|+.+.+.++.. |.. ..+.+|++|+.+++... ++. +-..+...|..|+.+.+
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~----~aF~~c~~L~~l~l~~~--i~~-----I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHP----YCLEGCPKLARFEIPES--IRI-----LGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECT----TTTTTCTTCCEECCCTT--CCE-----ECTTTTTTCCSCCEEEE
T ss_pred CCCCCCEEEeCCccccCCcccEECH----HHhhCCccCCeEEeCCc--eEE-----EhhhhhcCCCCccEEEE
Confidence 466677766654321 111 12356677777776541 221 22334566666665543
No 160
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=94.29 E-value=0.0001 Score=61.74 Aligned_cols=184 Identities=13% Similarity=0.047 Sum_probs=86.8
Q ss_pred CCcEEEccCCCCcchHHHHHHcccCCCceEEEeeCCCCCCCHHHHHHHHhhCCCCCeEecCCCCCCCHHHHHHHHhcCCC
Q 023680 80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159 (279)
Q Consensus 80 ~l~~l~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~l~~l~~~~~~ 159 (279)
.+++|++++..-.. ........+++|++|+++ .+...+. .-......++++..+....+..++.-. ......+++
T Consensus 31 ~l~~L~Ls~N~i~~--i~~~~f~~l~~L~~L~Ls-~N~i~~~-i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~ 105 (350)
T 4ay9_X 31 NAIELRFVLTKLRV--IQKGAFSGFGDLEKIEIS-QNDVLEV-IEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPN 105 (350)
T ss_dssp TCSEEEEESCCCSE--ECTTSSTTCTTCCEEEEE-CCTTCCE-ECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTT
T ss_pred CCCEEEccCCcCCC--cCHHHHcCCCCCCEEECc-CCCCCCc-cChhHhhcchhhhhhhcccCCcccccC-chhhhhccc
Confidence 36677776543211 111122356777777777 3322110 000111234555554333222222110 111345678
Q ss_pred CCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCC
Q 023680 160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL 239 (279)
Q Consensus 160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L 239 (279)
|++|+++++ .+....-. ......++..|++.++.. +..-....+......++.|+++++. ++. +..-+-...+|
T Consensus 106 L~~L~l~~n-~l~~~~~~-~~~~~~~l~~l~l~~~~~-i~~l~~~~f~~~~~~l~~L~L~~N~-i~~--i~~~~f~~~~L 179 (350)
T 4ay9_X 106 LQYLLISNT-GIKHLPDV-HKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNG-IQE--IHNSAFNGTQL 179 (350)
T ss_dssp CCEEEEEEE-CCSSCCCC-TTCCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSSC-CCE--ECTTSSTTEEE
T ss_pred ccccccccc-ccccCCch-hhcccchhhhhhhccccc-cccccccchhhcchhhhhhcccccc-ccC--CChhhccccch
Confidence 888888764 33211000 001234566777765432 2222111222223468888888754 443 11111123678
Q ss_pred CEEeccCCCCCChHHHHHHhhccccCcccccccccccccC
Q 023680 240 RSLDLCGCVCITGISSADVIIRPSRNCCVVKRECSIGCFI 279 (279)
Q Consensus 240 ~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~~~~~~ 279 (279)
++|+++++..++.-.- .....++.|+.++++++.|
T Consensus 180 ~~l~l~~~n~l~~i~~-----~~f~~l~~L~~LdLs~N~l 214 (350)
T 4ay9_X 180 DELNLSDNNNLEELPN-----DVFHGASGPVILDISRTRI 214 (350)
T ss_dssp EEEECTTCTTCCCCCT-----TTTTTEECCSEEECTTSCC
T ss_pred hHHhhccCCcccCCCH-----HHhccCcccchhhcCCCCc
Confidence 8999987665553221 1246677788777776643
No 161
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.20 E-value=0.0016 Score=55.54 Aligned_cols=11 Identities=9% Similarity=0.474 Sum_probs=6.3
Q ss_pred CCCCCeEecCC
Q 023680 131 CHDLQDLDLSK 141 (279)
Q Consensus 131 ~~~L~~L~L~~ 141 (279)
|++|+.+.++.
T Consensus 225 ~~~L~~l~l~~ 235 (401)
T 4fdw_A 225 TSQLKTIEIPE 235 (401)
T ss_dssp CTTCCCEECCT
T ss_pred CCCCCEEecCC
Confidence 55666666643
No 162
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=93.61 E-value=0.0042 Score=36.16 Aligned_cols=30 Identities=13% Similarity=-0.046 Sum_probs=26.8
Q ss_pred cCCChHHHHHHHHHHHHhcccccCCCCCcc
Q 023680 6 TNLSSEDLNLCFEKMMMAGAGADRAGGVKM 35 (279)
Q Consensus 6 ~~l~~e~l~~if~~l~~~~~~~~~~~~~~~ 35 (279)
..||+|++.+||+++...+....+++|+..
T Consensus 10 ~~LP~eil~~I~~~L~~~dl~~~~~Vck~w 39 (53)
T 1fs1_A 10 DSLPDELLLGIFSCLCLPELLKVSGVCKRW 39 (53)
T ss_dssp CSSCHHHHHHHHTTSCGGGHHHHHTTCHHH
T ss_pred HHCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 489999999999999999999888888743
No 163
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=92.50 E-value=0.025 Score=46.85 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=20.0
Q ss_pred cCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEEeccCCC
Q 023680 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248 (279)
Q Consensus 209 ~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L~l~~c~ 248 (279)
.+++|+.|+|+++. ++... ...+.++++|++|+|++|.
T Consensus 54 ~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 54 GLGELRNLTIVKSG-LRFVA-PDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp SCCCCSEEECCSSC-CCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred cccCCCEEECCCCc-cceeC-HHHhcCCcCCCEEeCCCCc
Confidence 45666666666643 33311 1123455666666666654
No 164
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.17 E-value=0.16 Score=42.89 Aligned_cols=103 Identities=19% Similarity=0.396 Sum_probs=54.0
Q ss_pred hhCCCCCeEecCCC-CCCCHHHHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHH
Q 023680 129 NSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGC-TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAI 206 (279)
Q Consensus 129 ~~~~~L~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l 206 (279)
..|.+|+.+.++.. ..+... ....|++|+.+.+... ..+.+..+ ..|.+|+.++|...-..+.+.+
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~a---- 329 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSRITELPESVF----AGCISLKSIDIPEGITQILDDA---- 329 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTTT----
T ss_pred eecccccEEecccccceecCc----ccccccccccccCCCcccccCceee----cCCCCcCEEEeCCcccEehHhH----
Confidence 34777777777642 111111 1345677777777541 11222211 2567777777754221133322
Q ss_pred HhcCCCCCeEeccCC-CCCCHHHHHHHHhcCCCCCEEeccCC
Q 023680 207 GRNCNQLQSLNLGWC-EDVGDVGVMNLAYGCPDLRSLDLCGC 247 (279)
Q Consensus 207 ~~~~~~L~~L~l~~~-~~i~~~~l~~l~~~~~~L~~L~l~~c 247 (279)
...|.+|+++.|... ..|.+.+ +.+|++|+.+++.++
T Consensus 330 F~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 330 FAGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSC
T ss_pred hhCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCc
Confidence 245777888777542 2233322 367778888777763
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=89.86 E-value=0.053 Score=45.81 Aligned_cols=12 Identities=25% Similarity=0.631 Sum_probs=6.4
Q ss_pred hcCCCCCEEecc
Q 023680 234 YGCPDLRSLDLC 245 (279)
Q Consensus 234 ~~~~~L~~L~l~ 245 (279)
.+|.+|+++.+.
T Consensus 331 ~~C~~L~~i~ip 342 (394)
T 4gt6_A 331 AGCEQLERIAIP 342 (394)
T ss_dssp TTCTTCCEEEEC
T ss_pred hCCCCCCEEEEC
Confidence 445555555553
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=82.15 E-value=0.13 Score=43.38 Aligned_cols=98 Identities=19% Similarity=0.309 Sum_probs=48.2
Q ss_pred hcCCCCCEEEecCC-CCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCC-CCCCHHHHHHH
Q 023680 155 HGCPNLTRLNISGC-TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC-EDVGDVGVMNL 232 (279)
Q Consensus 155 ~~~~~L~~L~L~~~-~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~i~~~~l~~l 232 (279)
..|++|+.+.+... ..+.+..+ .+|.+|+.++|...-..+.+.+ ...|.+|+.+++... ..|.+. .
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~aF----~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~l~~I~~~----a 361 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEEAF----ESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLSLRKIGAN----A 361 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTTTT----TTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTTCCEECTT----T
T ss_pred cccccccccccccccceechhhh----cCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECccccEehHH----H
Confidence 34566666666531 11111111 2567777777754211122222 235777777777542 123222 2
Q ss_pred HhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccc
Q 023680 233 AYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRE 272 (279)
Q Consensus 233 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~ 272 (279)
+.+|++|+.+++... ++. +..+...|..|+.+
T Consensus 362 F~~C~~L~~i~lp~~--~~~------~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 362 FQGCINLKKVELPKR--LEQ------YRYDFEDTTKFKWI 393 (394)
T ss_dssp BTTCTTCCEEEEEGG--GGG------GGGGBCTTCEEEEE
T ss_pred hhCCCCCCEEEECCC--CEE------hhheecCCCCCcEE
Confidence 366777777777542 111 12345667766643
No 167
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=77.70 E-value=0.17 Score=42.65 Aligned_cols=98 Identities=13% Similarity=0.193 Sum_probs=59.0
Q ss_pred hhCCCCCeEecCCC-CCCCHHHHHHHHhcCCCCCEEEecCC-CCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHH
Q 023680 129 NSCHDLQDLDLSKS-FKLSDRSLYALAHGCPNLTRLNISGC-TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAI 206 (279)
Q Consensus 129 ~~~~~L~~L~L~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~-~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l 206 (279)
..|.+|+.+.+... ..+.+. ....|++|+.+.+... ..+.+..+ .+|.+|+.+++...-..+.+.+
T Consensus 294 ~~~~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~v~~I~~~aF----~~c~~L~~i~lp~~l~~I~~~a---- 361 (394)
T 4fs7_A 294 YGCSSLTEVKLLDSVKFIGEE----AFESCTSLVSIDLPYLVEEIGKRSF----RGCTSLSNINFPLSLRKIGANA---- 361 (394)
T ss_dssp TTCTTCCEEEECTTCCEECTT----TTTTCTTCCEECCCTTCCEECTTTT----TTCTTCCEECCCTTCCEECTTT----
T ss_pred cccccccccccccccceechh----hhcCCCCCCEEEeCCcccEEhHHhc----cCCCCCCEEEECccccEehHHH----
Confidence 34778888888653 112222 2456899999999752 12222222 2789999999975322233332
Q ss_pred HhcCCCCCeEeccCCCCCCHHHHHHHHhcCCCCCEE
Q 023680 207 GRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSL 242 (279)
Q Consensus 207 ~~~~~~L~~L~l~~~~~i~~~~l~~l~~~~~~L~~L 242 (279)
...|++|+.+++.... +. +..-+.+|++|+.+
T Consensus 362 F~~C~~L~~i~lp~~~--~~--~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 362 FQGCINLKKVELPKRL--EQ--YRYDFEDTTKFKWI 393 (394)
T ss_dssp BTTCTTCCEEEEEGGG--GG--GGGGBCTTCEEEEE
T ss_pred hhCCCCCCEEEECCCC--EE--hhheecCCCCCcEE
Confidence 3569999999997532 22 12234677887765
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=77.08 E-value=0.35 Score=40.34 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=39.8
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCC-CCCCHHHHHHHHhcCCCCCeEeccCC-CCCCHHHHHHH
Q 023680 155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV-KAATDYALQAIGRNCNQLQSLNLGWC-EDVGDVGVMNL 232 (279)
Q Consensus 155 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~-~~i~~~~l~~l 232 (279)
..|.+|+.+.+.. .+..-+.. ....|++|+.+.+.+.. ..+.+.. ...|.+|+.+.+... ..|.+.+
T Consensus 260 ~~~~~l~~i~l~~--~i~~i~~~-aF~~c~~L~~i~l~~~~i~~I~~~a----F~~c~~L~~i~lp~~l~~I~~~a---- 328 (379)
T 4h09_A 260 QNCTALKTLNFYA--KVKTVPYL-LCSGCSNLTKVVMDNSAIETLEPRV----FMDCVKLSSVTLPTALKTIQVYA---- 328 (379)
T ss_dssp TTCTTCCEEEECC--CCSEECTT-TTTTCTTCCEEEECCTTCCEECTTT----TTTCTTCCEEECCTTCCEECTTT----
T ss_pred ceeehhccccccc--cceecccc-ccccccccccccccccccceehhhh----hcCCCCCCEEEcCccccEEHHHH----
Confidence 3456666666643 11111111 11256777777775432 1122222 235777777777532 2233222
Q ss_pred HhcCCCCCEEeccC
Q 023680 233 AYGCPDLRSLDLCG 246 (279)
Q Consensus 233 ~~~~~~L~~L~l~~ 246 (279)
+.+|++|+.+.+..
T Consensus 329 F~~C~~L~~i~ip~ 342 (379)
T 4h09_A 329 FKNCKALSTISYPK 342 (379)
T ss_dssp TTTCTTCCCCCCCT
T ss_pred hhCCCCCCEEEECC
Confidence 35677777777643
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=74.35 E-value=1.2 Score=30.94 Aligned_cols=21 Identities=19% Similarity=0.120 Sum_probs=10.0
Q ss_pred cCCCCCEEeccCCCCCChHHH
Q 023680 235 GCPDLRSLDLCGCVCITGISS 255 (279)
Q Consensus 235 ~~~~L~~L~l~~c~~i~~~~~ 255 (279)
..++|+.|+|++|+..-+-.+
T Consensus 53 ~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 53 ALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp GCTTCCEEECCSSCCBCSGGG
T ss_pred hccccCEEEecCCCeeccCcc
Confidence 344555555555554443333
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=74.16 E-value=0.19 Score=42.03 Aligned_cols=102 Identities=18% Similarity=0.258 Sum_probs=56.4
Q ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHcCCCCcEEEcCCCCCCCCHHHHHHHHhcCCCCCeEeccCCC--CCCHHHHHHH
Q 023680 155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE--DVGDVGVMNL 232 (279)
Q Consensus 155 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~--~i~~~~l~~l 232 (279)
..|+.|+.+.+... ++.-+-. ....|..|+.+.+...- ..-+.. ....|++|+.+.+.++. .|.+. .
T Consensus 237 ~~~~~L~~i~lp~~--v~~I~~~-aF~~~~~l~~i~l~~~i---~~i~~~-aF~~c~~L~~i~l~~~~i~~I~~~----a 305 (379)
T 4h09_A 237 YGMKALDEIAIPKN--VTSIGSF-LLQNCTALKTLNFYAKV---KTVPYL-LCSGCSNLTKVVMDNSAIETLEPR----V 305 (379)
T ss_dssp TTCSSCCEEEECTT--CCEECTT-TTTTCTTCCEEEECCCC---SEECTT-TTTTCTTCCEEEECCTTCCEECTT----T
T ss_pred cCCccceEEEcCCC--ccEeCcc-ccceeehhccccccccc---eecccc-ccccccccccccccccccceehhh----h
Confidence 34567777777542 2111001 11256778888876522 211112 23468999999997632 23332 2
Q ss_pred HhcCCCCCEEeccCCCCCChHHHHHHhhccccCccccccccc
Q 023680 233 AYGCPDLRSLDLCGCVCITGISSADVIIRPSRNCCVVKRECS 274 (279)
Q Consensus 233 ~~~~~~L~~L~l~~c~~i~~~~~~~l~~~~~~~c~~~~~~~~ 274 (279)
+.+|.+|+.+++... ++. +-..+..+|..|+.+.+
T Consensus 306 F~~c~~L~~i~lp~~--l~~-----I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA--LKT-----IQVYAFKNCKALSTISY 340 (379)
T ss_dssp TTTCTTCCEEECCTT--CCE-----ECTTTTTTCTTCCCCCC
T ss_pred hcCCCCCCEEEcCcc--ccE-----EHHHHhhCCCCCCEEEE
Confidence 478899999999642 222 22334577777776553
No 171
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=58.92 E-value=2.5 Score=34.03 Aligned_cols=31 Identities=13% Similarity=0.003 Sum_probs=27.3
Q ss_pred cCCChHHHHHHHHHHHHhccc-ccCCCCCccC
Q 023680 6 TNLSSEDLNLCFEKMMMAGAG-ADRAGGVKMD 36 (279)
Q Consensus 6 ~~l~~e~l~~if~~l~~~~~~-~~~~~~~~~~ 36 (279)
..||+|++..||.+|+..++. .++.||+.+.
T Consensus 52 ~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr 83 (297)
T 2e31_A 52 AELPEPLLLRVLAELPATELVQACRLVCLRWK 83 (297)
T ss_dssp TSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHH
T ss_pred hhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHH
Confidence 489999999999999999998 8988887543
No 172
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=53.30 E-value=1.8 Score=36.63 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHHhcccccCCCCCccC
Q 023680 7 NLSSEDLNLCFEKMMMAGAGADRAGGVKMD 36 (279)
Q Consensus 7 ~l~~e~l~~if~~l~~~~~~~~~~~~~~~~ 36 (279)
.||+|++.+||++|+..++..++++|+.++
T Consensus 17 ~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~ 46 (464)
T 3v7d_B 17 SLPFEISLKIFNYLQFEDIINSLGVSQNWN 46 (464)
T ss_dssp HSCHHHHHHHHTTSCHHHHHHHHTTCHHHH
T ss_pred HCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999999998544
No 173
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=50.71 E-value=2.1 Score=34.48 Aligned_cols=30 Identities=7% Similarity=-0.181 Sum_probs=26.9
Q ss_pred ccCCChHHHHHHHHHHHHhcccccCCCCCc
Q 023680 5 ATNLSSEDLNLCFEKMMMAGAGADRAGGVK 34 (279)
Q Consensus 5 ~~~l~~e~l~~if~~l~~~~~~~~~~~~~~ 34 (279)
..+||.|++.+||++|...++...+++|+.
T Consensus 5 l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~ 34 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFLSPHDLCQLGSTNHY 34 (312)
T ss_dssp HHHSCHHHHHHHHHTSCHHHHHHHHTTCHH
T ss_pred hHhCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 347999999999999999999999999864
No 174
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=37.52 E-value=5.6 Score=33.44 Aligned_cols=28 Identities=7% Similarity=-0.237 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHHHHhcccccCCCCCc
Q 023680 7 NLSSEDLNLCFEKMMMAGAGADRAGGVK 34 (279)
Q Consensus 7 ~l~~e~l~~if~~l~~~~~~~~~~~~~~ 34 (279)
.||+|++.+||++|+..++...+++|+.
T Consensus 21 ~lp~e~~~~i~~~l~~~~l~~~~~v~~~ 48 (445)
T 2ovr_B 21 LLPKELALYVLSFLEPKDLLQAAQTCRY 48 (445)
T ss_dssp SSCHHHHHHHHTTSCHHHHHHHTTSCHH
T ss_pred HCCHHHHHHHHHhCCHHHHHHHHHHhHH
Confidence 7999999999999999999999988864
No 175
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=26.12 E-value=4.5 Score=34.02 Aligned_cols=29 Identities=7% Similarity=-0.136 Sum_probs=25.9
Q ss_pred CCChH----HHHHHHHHHHHhcccccCCCCCcc
Q 023680 7 NLSSE----DLNLCFEKMMMAGAGADRAGGVKM 35 (279)
Q Consensus 7 ~l~~e----~l~~if~~l~~~~~~~~~~~~~~~ 35 (279)
.||+| ++.+||++|+..++..++++|+.+
T Consensus 13 ~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w 45 (435)
T 1p22_A 13 ALPARGLDHIAENILSYLDAKSLCAAELVCKEW 45 (435)
T ss_dssp HTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHH
T ss_pred HCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 58999 999999999999999998888754
Done!