BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023682
(279 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 48.1 bits (113), Expect = 5e-06, Method: Composition-based stats.
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 232 CRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279
C+ C KE S++ +PC HL +CKDC + CP+C+ +V LS
Sbjct: 27 CKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTVRTFLS 74
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 47.4 bits (111), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 232 CRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279
C+ C KE SV+ +PC HL +C++C + CP+C+ + +V LS
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 41.6 bits (96), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 232 CRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVC-QFVKNASVL 275
C C+ + +L+PCRH CLC C CP+C QFV+ + L
Sbjct: 18 CVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFAL 62
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 38.9 bits (89), Expect = 0.003, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 229 QMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFV 269
+ +C+ C + +++ +PC HL CK C V CP+C V
Sbjct: 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTV 64
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 38.1 bits (87), Expect = 0.005, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 229 QMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFV 269
+ +C+ C + +++ +PC HL CK C V CP+C V
Sbjct: 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTV 65
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 35.8 bits (81), Expect = 0.024, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 232 CRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279
C+ C + S++ +PC HL +C +C + +CP+C+ + V LS
Sbjct: 16 CKVCLDRAVSIVFVPCGHL-VCAECAPGLQLCPICRAPVRSRVRTFLS 62
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 222 KSISRNHQM-------ICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFV 269
K IS Q+ +C+ C + +++ +PC HL CK C V CP+C V
Sbjct: 10 KEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTV 64
>pdb|2WVR|A Chain A, Human Cdt1:geminin Complex
pdb|2WVR|B Chain B, Human Cdt1:geminin Complex
Length = 209
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 15/149 (10%)
Query: 58 RNSSVTSASGSMTAAPPIILSLADNVRTELDRQKEEFDQYIK--VQEEYLAKGVQDMKQR 115
RN +TS T++P +I+ + + +E FD IK +Y K V + +++
Sbjct: 54 RNDHLTST----TSSPGVIVPESSENKNLGGVTQESFDLMIKENPSSQYW-KEVAEKRRK 108
Query: 116 HMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVN 175
+ L EK L K++++KD EI + ++N+EL E A++ Y A+ E +
Sbjct: 109 ALYEALKENEK-LHKEIEQKDNEIARLKKENKELAEV-------AEHVQYMAELIERLNG 160
Query: 176 LLKSNLQQAISQGADQGKEGFGDSEVDDA 204
N + +Q D +E DS V+D+
Sbjct: 161 EPLDNFESLDNQEFDSEEETVEDSLVEDS 189
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 69 MTAAPPIILSLADNVRTELDRQKEEFDQYIKVQE----EYLAKGVQDMKQRHMASFLSAI 124
M P I +LADNV D+ E Q++K E E+ A ++D + FL +
Sbjct: 460 MPPRPHFITALADNVYQLADKWVE-MAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLETL 518
Query: 125 EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 162
+ + KD + +R L++ + ++QN
Sbjct: 519 TQNGHSNKKPKDFDWAKFPVASRALLDIYQDNIVKSQN 556
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 5/98 (5%)
Query: 69 MTAAPPIILSLADNVRTELDRQKEEFDQYIKVQE----EYLAKGVQDMKQRHMASFLSAI 124
M P I +LADNV D+ E Q++K E E+ A ++D + FL +
Sbjct: 460 MPPRPHFITALADNVYQLADKWVE-MAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLETL 518
Query: 125 EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 162
+ + KD + +R L++ + ++QN
Sbjct: 519 TQNGHSNKKPKDFDWAKFPVASRALLDIYQDNIVKSQN 556
>pdb|1BOR|A Chain A, Transcription Factor Pml, A Proto-Oncoprotein, Nmr, 1
Representative Structure At Ph 7.5, 30 C, In The
Presence Of Zinc
Length = 56
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 232 CRACKAKEASVLLMPCRHLCLCKDC-DVLVAVCPVCQ 267
C+ C+A+ L+PC H LC C + CP+CQ
Sbjct: 9 CQQCQAEAKCPKLLPCLH-TLCSGCLEASGMQCPICQ 44
>pdb|1KCR|L Chain L, Crystal Structure Of Antibody Pc283 In Complex With Ps1
Peptide
Length = 213
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
Query: 25 NSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
NS QD AD + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 NSWTAQDSADSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 211
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 230 MICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQ 267
M+C C +E + PC H C+ C + CPVC+
Sbjct: 19 MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCR 56
>pdb|1EAP|A Chain A, Crystal Structure Of A Catalytic Antibody With A Serine
Protease Active Site
Length = 213
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 18 QKLQISLNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIIL 77
++ Q LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+
Sbjct: 153 ERAQGVLNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVK 206
Query: 78 SLADN 82
S N
Sbjct: 207 SFNRN 211
>pdb|1I8M|L Chain L, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1I8M|A Chain A, Crystal Structure Of A Recombinant Anti-Single-Stranded
Dna Antibody Fragment Complexed With Dt5
pdb|1P7K|L Chain L, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1P7K|A Chain A, Crystal Structure Of An Anti-Ssdna Antigen-Binding
Fragment (Fab) Bound To
4-(2-Hydroxyethyl)piperazine-1-Ethanesulfonic Acid
(Hepes)
pdb|1XF2|L Chain L, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF2|A Chain A, Structure Of Fab Dna-1 Complexed With Dt3
pdb|1XF3|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF3|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P65
pdb|1XF4|L Chain L, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|1XF4|A Chain A, Structure Of Ligand-Free Fab Dna-1 In Space Group P321
Solved From Crystals With Perfect Hemihedral Twinning
pdb|2FR4|L Chain L, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
pdb|2FR4|A Chain A, Structure Of Fab Dna-1 Complexed With A Stem-loop Dna
Ligand
Length = 214
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1RU9|L Chain L, Crystal Structure (A) Of U.V.-Irradiated Cationic
Cyclization Antibody 4c6 Fab At Ph 4.6 With A Data Set
Collected In-House.
pdb|1RUA|L Chain L, Crystal Structure (b) Of U.v.-irradiated Cationic
Cyclization Antibody 4c6 Fab At Ph 4.6 With A Data Set
Collected At Ssrl Beamline 11-1.
pdb|1RUL|L Chain L, Crystal Structure (d) Of U.v.-irradiated Cationic
Cyclization Antibody 4c6 Fab At Ph 5.6 With A Data Set
Collected At Ssrl Beamline 11-1.
pdb|1RUM|L Chain L, Crystal Structure (F) Of H2o2-Soaked Cationic Cyclization
Antibody 4c6 Fab At Ph 8.5 With A Data Set Collected At
Ssrl Beamline 9-1
Length = 219
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSXTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
>pdb|3GK8|L Chain L, X-Ray Crystal Structure Of The Fab From Mab 14, Mouse
Antibody Against Canine Parvovirus
Length = 214
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSL 79
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S
Sbjct: 160 LNSFTGQDSKDSTYSM------SSTLTLTKDEYERHASYTCEATHKTSTAPIVKSF 209
>pdb|2FBJ|L Chain L, Refined Crystal Structure Of The Galactan-Binding
Immunoglobulin Fab J539 At 1.95-Angstroms Resolution
Length = 213
Score = 27.3 bits (59), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 159 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 211
>pdb|3HZK|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.4)kdo
pdb|3HZM|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo
pdb|3HZV|A Chain A, Crystal Structure Of S73-2 Antibody In Complex With
Antigen Kdo(2.8) Kdo(2.4)kdo
Length = 219
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD+ D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSWTDQDKKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
>pdb|2J88|L Chain L, Hyaluronidase In Complex With A Monoclonal Igg Fab
Fragment
Length = 213
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 159 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 211
>pdb|1KB5|L Chain L, Murine T-Cell Receptor Variable DomainFAB COMPLEX
Length = 214
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|3V7A|G Chain G, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
pdb|3V7A|H Chain H, Structural Basis For Broad Detection Of Genogroup Ii
Noroviruses By A Monoclonal Antibody That Binds To A
Site Occluded In The Viral Particle
Length = 215
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 161 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 213
>pdb|1IAI|M Chain M, Idiotype-Anti-Idiotype Fab Complex
pdb|1AIF|L Chain L, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
pdb|1AIF|A Chain A, Anti-Idiotypic Fab 409.5.3 (Igg2a) Fab From Mouse
Length = 215
Score = 27.3 bits (59), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 161 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 213
>pdb|1CT8|A Chain A, Catalytic Antibody 7c8 Complex
pdb|1CT8|C Chain C, Catalytic Antibody 7c8 Complex
Length = 214
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1JGL|L Chain L, Crystal Structure Of Immunoglobulin Fab Fragment Complexed
With 17-Beta-Estradiol
pdb|1JHK|L Chain L, Crystal Structure Of The Anti-Estradiol Antibody 57-2
Length = 214
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|4AEH|L Chain L, Crystal Structure Of The Anti-Aahi Fab9c2 Antibody
Length = 214
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|1IAI|L Chain L, Idiotype-Anti-Idiotype Fab Complex
Length = 214
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|3V6O|E Chain E, Leptin Receptor-Antibody Complex
pdb|3V6O|F Chain F, Leptin Receptor-Antibody Complex
pdb|3VG0|L Chain L, Antibody Fab Fragment
Length = 215
Score = 27.3 bits (59), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 161 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 213
>pdb|1IL1|B Chain B, Crystal Structure Of G3-519, An Anti-Hiv Monoclonal
Antibody
Length = 219
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 165 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 217
>pdb|3RVT|C Chain C, Structure Of 4c1 Fab In P212121 Space Group
pdb|3RVU|C Chain C, Structure Of 4c1 Fab In C2221 Space Group
pdb|3RVV|C Chain C, Crystal Structure Of Der F 1 Complexed With Fab 4c1
pdb|3RVX|C Chain C, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 213
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
>pdb|3RVW|C Chain C, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 212
Score = 27.3 bits (59), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 24 LNSNICQDEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADN 82
LNS QD D + S+ S+ L L+ D+ ER++S T + T+ PI+ S N
Sbjct: 160 LNSWTDQDSKDSTYSM------SSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRN 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,440,192
Number of Sequences: 62578
Number of extensions: 279150
Number of successful extensions: 1253
Number of sequences better than 100.0: 311
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 297
Number of HSP's that attempted gapping in prelim test: 1234
Number of HSP's gapped (non-prelim): 314
length of query: 279
length of database: 14,973,337
effective HSP length: 98
effective length of query: 181
effective length of database: 8,840,693
effective search space: 1600165433
effective search space used: 1600165433
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)