Query 023682
Match_columns 279
No_of_seqs 265 out of 1185
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 05:51:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1100 Predicted E3 ubiquitin 100.0 3E-37 6.6E-42 275.1 10.7 186 82-278 15-207 (207)
2 KOG4265 Predicted E3 ubiquitin 99.3 6.4E-13 1.4E-17 125.8 1.9 52 227-278 288-343 (349)
3 PF13920 zf-C3HC4_3: Zinc fing 99.1 2.9E-11 6.3E-16 84.4 1.7 43 230-272 3-49 (50)
4 KOG4172 Predicted E3 ubiquitin 99.0 6.5E-12 1.4E-16 89.6 -3.8 50 230-279 8-62 (62)
5 KOG4275 Predicted E3 ubiquitin 98.9 1E-10 2.2E-15 108.5 -1.6 51 229-279 300-350 (350)
6 KOG1571 Predicted E3 ubiquitin 98.8 6.2E-10 1.3E-14 105.8 0.5 52 228-279 304-355 (355)
7 KOG0978 E3 ubiquitin ligase in 98.3 1.3E-05 2.8E-10 82.7 13.4 48 224-272 638-690 (698)
8 PF14634 zf-RING_5: zinc-RING 97.8 1.3E-05 2.7E-10 54.6 2.0 36 232-268 2-44 (44)
9 PLN03208 E3 ubiquitin-protein 97.7 2.9E-05 6.3E-10 69.0 4.2 44 228-272 17-80 (193)
10 PF13923 zf-C3HC4_2: Zinc fing 97.7 1.7E-05 3.7E-10 52.4 1.7 34 232-266 1-39 (39)
11 PHA02929 N1R/p28-like protein; 97.7 3.4E-05 7.3E-10 70.7 3.7 47 229-276 174-232 (238)
12 KOG1785 Tyrosine kinase negati 97.6 1.7E-05 3.6E-10 77.0 1.1 49 228-277 368-422 (563)
13 smart00184 RING Ring finger. E 97.5 6.7E-05 1.5E-09 47.2 2.3 34 232-266 1-39 (39)
14 PF13639 zf-RING_2: Ring finge 97.4 4.3E-05 9.4E-10 51.6 0.8 36 231-267 2-44 (44)
15 KOG0317 Predicted E3 ubiquitin 97.4 6.1E-05 1.3E-09 70.3 2.0 49 228-277 238-290 (293)
16 cd00162 RING RING-finger (Real 97.4 0.00014 3.1E-09 47.4 2.8 39 231-270 1-45 (45)
17 PF14447 Prok-RING_4: Prokaryo 97.3 0.0001 2.2E-09 52.9 1.6 44 228-272 6-51 (55)
18 KOG0823 Predicted E3 ubiquitin 97.3 0.00018 3.9E-09 65.4 2.7 45 228-273 46-97 (230)
19 PF00097 zf-C3HC4: Zinc finger 97.2 0.00014 3E-09 48.1 1.0 34 232-266 1-41 (41)
20 KOG0320 Predicted E3 ubiquitin 97.1 0.00015 3.2E-09 63.6 0.8 48 230-278 132-187 (187)
21 TIGR00599 rad18 DNA repair pro 97.1 0.00024 5.2E-09 69.6 2.3 48 224-272 21-72 (397)
22 PHA02926 zinc finger-like prot 96.7 0.00035 7.5E-09 63.5 -0.1 48 227-275 168-234 (242)
23 PF15227 zf-C3HC4_4: zinc fing 96.7 0.00089 1.9E-08 45.3 1.6 34 232-266 1-42 (42)
24 KOG2177 Predicted E3 ubiquitin 96.6 0.00066 1.4E-08 59.7 0.5 41 227-268 11-55 (386)
25 KOG2164 Predicted E3 ubiquitin 96.6 0.001 2.2E-08 66.4 1.9 43 229-272 186-237 (513)
26 smart00504 Ubox Modified RING 96.3 0.0025 5.5E-08 45.5 2.3 42 230-272 2-47 (63)
27 COG5574 PEX10 RING-finger-cont 96.3 0.0014 3E-08 60.7 1.0 41 229-270 215-261 (271)
28 PF13445 zf-RING_UBOX: RING-ty 96.1 0.002 4.3E-08 44.1 0.7 27 232-260 1-31 (43)
29 COG5432 RAD18 RING-finger-cont 96.1 0.0025 5.4E-08 60.0 1.4 47 225-272 21-71 (391)
30 COG5236 Uncharacterized conser 96.0 0.0046 9.9E-08 59.5 2.7 47 227-274 59-111 (493)
31 COG5540 RING-finger-containing 95.8 0.0068 1.5E-07 57.4 3.0 43 228-271 322-372 (374)
32 KOG0287 Postreplication repair 95.6 0.0029 6.3E-08 60.7 -0.1 48 225-273 19-70 (442)
33 KOG4692 Predicted E3 ubiquitin 95.4 0.0058 1.3E-07 59.0 1.1 44 227-271 420-467 (489)
34 PF12678 zf-rbx1: RING-H2 zinc 94.4 0.027 5.8E-07 42.4 2.1 27 240-267 43-73 (73)
35 KOG0802 E3 ubiquitin ligase [P 94.2 0.017 3.7E-07 58.7 0.9 43 228-271 290-341 (543)
36 PF14835 zf-RING_6: zf-RING of 93.7 0.028 6.1E-07 41.8 1.0 43 227-270 5-50 (65)
37 KOG2879 Predicted E3 ubiquitin 93.5 0.049 1.1E-06 51.0 2.5 44 227-271 237-287 (298)
38 KOG2113 Predicted RNA binding 93.1 0.083 1.8E-06 50.5 3.3 50 227-276 341-392 (394)
39 PF04641 Rtf2: Rtf2 RING-finge 93.0 0.08 1.7E-06 48.9 3.1 46 227-273 111-163 (260)
40 COG5243 HRD1 HRD ubiquitin lig 92.8 0.055 1.2E-06 52.7 1.7 43 227-270 285-344 (491)
41 KOG4628 Predicted E3 ubiquitin 92.6 0.08 1.7E-06 51.2 2.5 43 230-273 230-280 (348)
42 KOG1813 Predicted E3 ubiquitin 91.2 0.077 1.7E-06 50.1 0.7 45 230-275 242-290 (313)
43 KOG3039 Uncharacterized conser 91.2 0.14 3.1E-06 47.4 2.3 44 228-272 220-271 (303)
44 COG5152 Uncharacterized conser 91.1 0.064 1.4E-06 48.3 0.0 46 230-276 197-246 (259)
45 KOG1814 Predicted E3 ubiquitin 90.4 0.12 2.6E-06 50.9 1.2 31 228-259 183-216 (445)
46 KOG1039 Predicted E3 ubiquitin 89.9 0.16 3.4E-06 49.2 1.5 47 228-275 160-225 (344)
47 KOG4159 Predicted E3 ubiquitin 89.3 0.18 3.9E-06 49.7 1.4 45 227-272 82-130 (398)
48 KOG0825 PHD Zn-finger protein 89.1 0.11 2.3E-06 54.9 -0.3 47 229-276 123-176 (1134)
49 KOG3002 Zn finger protein [Gen 88.5 0.24 5.1E-06 47.1 1.6 44 227-272 46-92 (299)
50 PF04710 Pellino: Pellino; In 88.2 0.15 3.2E-06 50.1 0.0 41 238-278 356-411 (416)
51 PF03854 zf-P11: P-11 zinc fin 87.6 0.22 4.8E-06 35.0 0.6 41 231-274 4-49 (50)
52 KOG0804 Cytoplasmic Zn-finger 86.2 41 0.00088 34.0 15.8 83 93-175 340-427 (493)
53 PF04564 U-box: U-box domain; 85.8 0.71 1.5E-05 34.4 2.6 43 229-272 4-51 (73)
54 KOG1103 Predicted coiled-coil 84.9 22 0.00048 35.0 12.7 39 79-117 136-184 (561)
55 PF06785 UPF0242: Uncharacteri 84.6 22 0.00048 34.6 12.5 46 141-186 131-176 (401)
56 PF01166 TSC22: TSC-22/dip/bun 84.6 1.5 3.2E-05 32.0 3.6 31 137-167 14-44 (59)
57 PF09726 Macoilin: Transmembra 84.5 48 0.001 35.3 16.1 52 131-182 546-597 (697)
58 PF00038 Filament: Intermediat 83.7 37 0.00081 31.5 17.1 96 85-184 180-281 (312)
59 KOG1001 Helicase-like transcri 82.8 0.46 1E-05 49.9 0.6 40 230-271 455-500 (674)
60 PF15619 Lebercilin: Ciliary p 82.8 35 0.00075 30.5 14.5 93 86-184 51-151 (194)
61 KOG2932 E3 ubiquitin ligase in 82.7 0.53 1.1E-05 45.1 0.8 41 229-271 90-134 (389)
62 KOG0288 WD40 repeat protein Ti 82.7 44 0.00095 33.4 13.9 73 86-162 3-80 (459)
63 KOG0828 Predicted E3 ubiquitin 82.5 0.45 9.8E-06 48.0 0.4 46 226-272 568-635 (636)
64 PF12329 TMF_DNA_bd: TATA elem 82.3 18 0.00039 27.3 9.0 57 128-184 3-59 (74)
65 KOG0311 Predicted E3 ubiquitin 81.4 0.13 2.8E-06 49.7 -3.7 47 226-273 40-92 (381)
66 COG5220 TFB3 Cdk activating ki 80.6 0.44 9.4E-06 44.2 -0.5 40 228-268 9-61 (314)
67 PF13935 Ead_Ea22: Ead/Ea22-li 80.5 17 0.00037 30.5 9.2 70 73-150 66-139 (139)
68 PF04216 FdhE: Protein involve 78.1 1.3 2.8E-05 41.4 1.9 48 229-277 172-228 (290)
69 PF05290 Baculo_IE-1: Baculovi 78.1 0.9 2E-05 38.5 0.7 45 229-274 80-135 (140)
70 KOG4673 Transcription factor T 77.8 43 0.00092 35.7 12.6 58 124-184 471-528 (961)
71 KOG4797 Transcriptional regula 77.4 14 0.00029 30.4 7.2 32 137-168 67-98 (123)
72 PF08614 ATG16: Autophagy prot 77.1 15 0.00033 32.3 8.2 22 82-103 71-92 (194)
73 KOG0980 Actin-binding protein 76.3 1.2E+02 0.0026 33.3 15.6 48 137-184 459-506 (980)
74 KOG2113 Predicted RNA binding 75.6 1 2.2E-05 43.2 0.4 49 228-276 135-188 (394)
75 PF13815 Dzip-like_N: Iguana/D 75.3 14 0.00031 30.0 7.1 45 116-160 73-117 (118)
76 PF15290 Syntaphilin: Golgi-lo 75.1 31 0.00068 32.8 10.0 36 114-153 70-105 (305)
77 COG3074 Uncharacterized protei 75.1 11 0.00023 28.7 5.6 32 138-169 40-71 (79)
78 PF10272 Tmpp129: Putative tra 74.8 2.5 5.5E-05 41.2 2.9 11 261-271 341-351 (358)
79 PF12126 DUF3583: Protein of u 74.7 61 0.0013 31.1 11.8 75 81-166 23-97 (324)
80 PRK10884 SH3 domain-containing 74.6 65 0.0014 29.0 12.5 32 130-161 125-156 (206)
81 PF06005 DUF904: Protein of un 74.2 35 0.00076 25.7 11.3 24 144-167 39-62 (72)
82 PF14362 DUF4407: Domain of un 73.7 76 0.0016 29.5 12.5 60 91-161 107-166 (301)
83 PF09730 BicD: Microtubule-ass 73.2 1.1E+02 0.0023 32.8 14.5 40 84-123 47-99 (717)
84 PF11544 Spc42p: Spindle pole 73.1 36 0.00078 26.2 8.1 42 128-169 10-51 (76)
85 PF13747 DUF4164: Domain of un 73.0 43 0.00093 26.2 11.5 65 121-185 17-87 (89)
86 PRK00888 ftsB cell division pr 73.0 14 0.0003 29.8 6.3 37 130-166 27-63 (105)
87 PF11559 ADIP: Afadin- and alp 72.7 42 0.00091 28.1 9.5 32 133-164 62-93 (151)
88 KOG3842 Adaptor protein Pellin 72.3 1.9 4E-05 41.6 1.3 51 228-278 340-424 (429)
89 PRK10884 SH3 domain-containing 72.1 69 0.0015 28.9 11.2 50 130-179 118-167 (206)
90 smart00744 RINGv The RING-vari 71.7 3.1 6.8E-05 28.9 2.0 36 231-267 1-49 (49)
91 PF04799 Fzo_mitofusin: fzo-li 70.6 44 0.00096 29.4 9.3 79 95-184 78-163 (171)
92 PF10367 Vps39_2: Vacuolar sor 70.2 2.4 5.3E-05 32.8 1.3 30 228-258 77-108 (109)
93 KOG4571 Activating transcripti 70.1 22 0.00048 33.8 7.8 32 137-168 255-286 (294)
94 PF07111 HCR: Alpha helical co 69.7 1.6E+02 0.0035 31.5 15.0 51 133-183 158-208 (739)
95 PF06156 DUF972: Protein of un 69.7 57 0.0012 26.4 9.2 40 130-169 15-54 (107)
96 PF15254 CCDC14: Coiled-coil d 68.8 65 0.0014 34.7 11.6 27 132-158 531-557 (861)
97 PRK15422 septal ring assembly 68.7 48 0.001 25.7 8.0 32 138-169 40-71 (79)
98 PF14570 zf-RING_4: RING/Ubox 68.6 2 4.3E-05 30.2 0.4 25 245-270 18-47 (48)
99 KOG0612 Rho-associated, coiled 67.4 1.1E+02 0.0024 34.7 13.2 54 128-185 499-552 (1317)
100 KOG1002 Nucleotide excision re 67.3 1.6 3.4E-05 44.7 -0.4 42 228-270 535-585 (791)
101 KOG0297 TNF receptor-associate 66.7 2.7 5.9E-05 41.3 1.1 49 226-275 18-71 (391)
102 KOG4657 Uncharacterized conser 65.8 1.1E+02 0.0025 28.2 15.7 90 74-165 11-100 (246)
103 PRK10920 putative uroporphyrin 65.3 94 0.002 30.8 11.5 39 126-164 95-134 (390)
104 PF11180 DUF2968: Protein of u 64.7 1.1E+02 0.0023 27.6 11.7 79 104-186 104-182 (192)
105 COG4985 ABC-type phosphate tra 64.3 49 0.0011 30.8 8.6 20 80-99 159-178 (289)
106 PRK04863 mukB cell division pr 63.8 2.8E+02 0.006 32.3 16.2 27 137-163 369-395 (1486)
107 PF05121 GvpK: Gas vesicle pro 63.5 40 0.00087 26.6 6.9 38 122-159 27-67 (88)
108 PF12861 zf-Apc11: Anaphase-pr 63.0 6.1 0.00013 31.0 2.2 30 241-271 46-82 (85)
109 PF05266 DUF724: Protein of un 62.3 1.1E+02 0.0025 27.1 12.4 31 132-162 126-156 (190)
110 COG2433 Uncharacterized conser 62.1 76 0.0017 33.3 10.4 16 170-185 493-508 (652)
111 PF00038 Filament: Intermediat 60.9 1.4E+02 0.003 27.6 14.4 86 77-168 7-92 (312)
112 KOG3091 Nuclear pore complex, 60.7 89 0.0019 32.0 10.4 49 138-188 377-427 (508)
113 COG3120 Uncharacterized protei 60.4 30 0.00066 29.2 6.0 56 104-186 69-124 (149)
114 PF12325 TMF_TATA_bd: TATA ele 60.1 98 0.0021 25.6 14.6 95 78-186 16-110 (120)
115 TIGR01837 PHA_granule_1 poly(h 60.0 94 0.002 25.4 9.9 64 94-157 46-116 (118)
116 KOG3859 Septins (P-loop GTPase 59.9 62 0.0013 31.3 8.7 55 105-159 320-377 (406)
117 smart00338 BRLZ basic region l 59.2 64 0.0014 23.1 9.1 33 132-164 28-60 (65)
118 PF04859 DUF641: Plant protein 58.3 39 0.00085 28.5 6.4 28 130-157 101-128 (131)
119 PRK11637 AmiB activator; Provi 58.1 1.9E+02 0.0042 28.4 13.9 16 81-96 43-58 (428)
120 PF09755 DUF2046: Uncharacteri 57.3 1.9E+02 0.0041 27.9 15.7 40 146-185 108-148 (310)
121 PRK00888 ftsB cell division pr 56.8 41 0.00088 27.0 6.1 39 131-169 35-73 (105)
122 COG3937 Uncharacterized conser 56.7 41 0.0009 27.5 6.1 42 110-153 63-106 (108)
123 cd00729 rubredoxin_SM Rubredox 56.6 3.9 8.5E-05 26.3 0.2 16 260-275 18-33 (34)
124 COG5175 MOT2 Transcriptional r 55.4 4.3 9.3E-05 39.6 0.3 41 231-272 16-65 (480)
125 PF12761 End3: Actin cytoskele 55.1 31 0.00067 31.1 5.6 49 135-186 94-142 (195)
126 PRK11637 AmiB activator; Provi 55.0 2.2E+02 0.0047 28.0 12.2 26 132-157 91-116 (428)
127 KOG4279 Serine/threonine prote 54.8 54 0.0012 35.6 8.0 70 88-157 956-1025(1226)
128 KOG4005 Transcription factor X 54.5 1.3E+02 0.0028 28.2 9.6 35 135-169 88-122 (292)
129 PF07412 Geminin: Geminin; In 54.4 97 0.0021 28.0 8.7 57 102-173 105-161 (200)
130 PRK14140 heat shock protein Gr 54.2 45 0.00098 29.8 6.5 39 131-169 38-76 (191)
131 TIGR03752 conj_TIGR03752 integ 53.7 1.6E+02 0.0035 30.0 11.0 34 82-116 63-96 (472)
132 PLN02189 cellulose synthase 53.7 9 0.0002 42.2 2.4 43 229-271 34-87 (1040)
133 PRK02119 hypothetical protein; 53.3 95 0.0021 23.3 7.8 49 139-187 4-52 (73)
134 PF12240 Angiomotin_C: Angiomo 52.9 1.8E+02 0.0039 26.4 13.1 77 95-180 71-165 (205)
135 PF10083 DUF2321: Uncharacteri 52.2 5.2 0.00011 34.7 0.2 25 252-276 30-55 (158)
136 PF15070 GOLGA2L5: Putative go 51.4 3.2E+02 0.0069 28.8 14.2 77 78-156 158-242 (617)
137 COG4942 Membrane-bound metallo 51.4 1.9E+02 0.0041 29.1 10.9 72 112-187 38-109 (420)
138 PRK06975 bifunctional uroporph 50.9 2E+02 0.0043 30.3 11.6 76 87-164 344-419 (656)
139 PF14775 NYD-SP28_assoc: Sperm 50.6 95 0.002 22.5 7.4 47 100-155 12-58 (60)
140 PRK05097 Ter macrodomain organ 50.3 13 0.00028 31.7 2.3 34 85-118 45-83 (150)
141 COG1196 Smc Chromosome segrega 50.0 4.2E+02 0.009 29.8 16.0 93 89-181 207-311 (1163)
142 PF11944 DUF3461: Protein of u 49.8 58 0.0013 27.3 6.0 54 82-141 71-124 (125)
143 PF10217 DUF2039: Uncharacteri 49.6 4.4 9.5E-05 32.2 -0.6 43 223-270 49-91 (92)
144 smart00787 Spc7 Spc7 kinetocho 49.1 1.3E+02 0.0029 28.7 9.2 31 131-161 212-242 (312)
145 KOG0977 Nuclear envelope prote 48.8 3.3E+02 0.0072 28.3 13.9 59 104-162 117-180 (546)
146 COG1592 Rubrerythrin [Energy p 48.5 7.1 0.00015 34.2 0.5 31 229-275 134-164 (166)
147 COG4306 Uncharacterized protei 48.3 7.2 0.00016 33.0 0.5 25 252-276 30-55 (160)
148 PF06657 Cep57_MT_bd: Centroso 48.0 1.2E+02 0.0027 23.1 7.9 25 77-101 9-33 (79)
149 PF14193 DUF4315: Domain of un 48.0 1E+02 0.0022 24.0 6.8 29 132-160 3-31 (83)
150 KOG2391 Vacuolar sorting prote 47.7 2.1E+02 0.0046 28.0 10.3 11 103-113 217-227 (365)
151 PF06005 DUF904: Protein of un 47.6 1.2E+02 0.0026 22.8 8.8 50 133-182 21-70 (72)
152 PF12718 Tropomyosin_1: Tropom 47.5 1.7E+02 0.0037 24.6 11.8 53 116-172 18-70 (143)
153 PF13874 Nup54: Nucleoporin co 47.5 1.7E+02 0.0036 24.5 9.4 65 81-162 33-97 (141)
154 PF07888 CALCOCO1: Calcium bin 47.5 3.5E+02 0.0076 28.2 15.2 73 103-177 174-246 (546)
155 PF15397 DUF4618: Domain of un 47.2 2.5E+02 0.0054 26.4 13.1 32 137-168 193-224 (258)
156 PF00769 ERM: Ezrin/radixin/mo 47.1 65 0.0014 29.6 6.6 45 140-184 1-45 (246)
157 PF05565 Sipho_Gp157: Siphovir 46.5 1.4E+02 0.0029 25.7 8.2 52 136-187 39-90 (162)
158 TIGR02209 ftsL_broad cell divi 46.2 57 0.0012 24.3 5.2 35 131-165 25-59 (85)
159 PF00804 Syntaxin: Syntaxin; 46.1 1.2E+02 0.0027 22.6 9.5 57 103-161 17-73 (103)
160 PF04977 DivIC: Septum formati 46.1 77 0.0017 23.0 5.8 33 131-163 18-50 (80)
161 PF12718 Tropomyosin_1: Tropom 46.0 1.8E+02 0.004 24.5 13.2 62 122-184 73-134 (143)
162 PF14282 FlxA: FlxA-like prote 45.6 1.1E+02 0.0024 24.4 7.1 51 136-186 18-72 (106)
163 PF10205 KLRAQ: Predicted coil 45.1 1.7E+02 0.0036 23.8 9.4 51 98-157 10-60 (102)
164 PF10174 Cast: RIM-binding pro 44.8 4.4E+02 0.0096 28.6 15.3 85 99-185 321-405 (775)
165 TIGR01562 FdhE formate dehydro 44.6 8.4 0.00018 36.8 0.4 43 228-270 183-234 (305)
166 smart00338 BRLZ basic region l 44.6 1.1E+02 0.0025 21.8 7.8 36 145-180 27-62 (65)
167 PRK14139 heat shock protein Gr 44.5 80 0.0017 28.1 6.5 22 90-112 30-51 (185)
168 KOG1734 Predicted RING-contain 44.3 9.2 0.0002 36.2 0.6 43 228-271 223-281 (328)
169 PF02403 Seryl_tRNA_N: Seryl-t 44.1 1.5E+02 0.0033 23.1 10.1 22 92-113 26-49 (108)
170 PF11471 Sugarporin_N: Maltopo 43.7 52 0.0011 24.0 4.3 27 142-168 30-56 (60)
171 TIGR02680 conserved hypothetic 43.6 5.6E+02 0.012 29.5 16.3 39 115-153 254-292 (1353)
172 PRK09039 hypothetical protein; 43.5 3.1E+02 0.0067 26.4 14.7 55 133-187 133-187 (343)
173 PF11500 Cut12: Spindle pole b 43.1 2.2E+02 0.0048 24.6 9.2 25 133-157 101-125 (152)
174 PRK14157 heat shock protein Gr 43.0 77 0.0017 29.2 6.3 19 98-116 82-100 (227)
175 PF09726 Macoilin: Transmembra 42.6 4.5E+02 0.0098 28.1 14.7 34 149-182 543-576 (697)
176 PRK13677 hypothetical protein; 42.4 85 0.0018 26.2 5.9 54 82-141 71-124 (125)
177 PRK14155 heat shock protein Gr 42.3 81 0.0017 28.6 6.3 28 139-166 22-49 (208)
178 PRK14714 DNA polymerase II lar 41.3 19 0.00042 40.5 2.5 47 229-276 667-725 (1337)
179 PF04977 DivIC: Septum formati 41.0 73 0.0016 23.1 5.0 37 132-168 26-62 (80)
180 PRK13729 conjugal transfer pil 40.9 96 0.0021 31.6 7.1 31 136-166 89-119 (475)
181 cd07665 BAR_SNX1 The Bin/Amphi 40.7 2.9E+02 0.0063 25.4 13.9 86 85-173 83-181 (234)
182 PF06303 MatP: Organiser of ma 40.1 25 0.00054 30.2 2.5 32 86-117 46-82 (148)
183 PRK05431 seryl-tRNA synthetase 40.1 3.1E+02 0.0067 27.2 10.6 59 93-157 26-86 (425)
184 PRK04406 hypothetical protein; 40.1 1.6E+02 0.0035 22.2 8.2 47 141-187 8-54 (75)
185 COG2959 HemX Uncharacterized e 40.1 3.9E+02 0.0084 26.6 11.6 83 78-164 45-132 (391)
186 PHA03415 putative internal vir 40.1 1.1E+02 0.0023 33.4 7.5 87 80-166 298-397 (1019)
187 PRK14159 heat shock protein Gr 40.0 92 0.002 27.4 6.2 22 142-163 35-56 (176)
188 PF14916 CCDC92: Coiled-coil d 39.8 59 0.0013 23.9 4.1 25 129-153 20-44 (60)
189 PF12329 TMF_DNA_bd: TATA elem 39.6 1.5E+02 0.0032 22.3 6.5 42 142-183 3-44 (74)
190 KOG3564 GTPase-activating prot 39.5 3.5E+02 0.0075 28.0 10.7 77 94-184 27-103 (604)
191 PF12240 Angiomotin_C: Angiomo 39.5 1.5E+02 0.0032 27.0 7.4 47 127-177 61-107 (205)
192 KOG1916 Nuclear protein, conta 39.3 6E+02 0.013 28.6 14.1 73 81-156 879-958 (1283)
193 PF07716 bZIP_2: Basic region 39.2 1.3E+02 0.0028 20.8 8.3 24 135-158 30-53 (54)
194 PRK14143 heat shock protein Gr 39.1 1.2E+02 0.0026 28.1 7.0 24 91-115 66-89 (238)
195 PF12999 PRKCSH-like: Glucosid 39.1 2E+02 0.0043 25.5 8.1 26 136-161 145-170 (176)
196 TIGR00414 serS seryl-tRNA synt 39.1 2.6E+02 0.0057 27.7 9.9 60 94-158 29-90 (418)
197 PF11932 DUF3450: Protein of u 38.7 3E+02 0.0065 24.9 10.2 32 133-164 59-90 (251)
198 PRK14158 heat shock protein Gr 38.7 1.3E+02 0.0028 26.9 7.0 10 102-111 49-58 (194)
199 PF08700 Vps51: Vps51/Vps67; 38.4 1.6E+02 0.0035 21.8 10.2 54 93-158 26-79 (87)
200 PRK14161 heat shock protein Gr 38.0 1.9E+02 0.0041 25.5 7.8 31 138-168 27-57 (178)
201 KOG1940 Zn-finger protein [Gen 37.9 6.3 0.00014 37.2 -1.5 42 231-274 160-209 (276)
202 PF07975 C1_4: TFIIH C1-like d 37.7 21 0.00046 25.3 1.5 16 252-267 31-50 (51)
203 PF05883 Baculo_RING: Baculovi 37.4 13 0.00027 31.6 0.3 32 229-260 26-65 (134)
204 cd00350 rubredoxin_like Rubred 37.4 14 0.0003 23.4 0.4 16 260-275 17-32 (33)
205 PRK03564 formate dehydrogenase 37.0 20 0.00043 34.4 1.6 42 228-269 186-235 (309)
206 KOG1941 Acetylcholine receptor 36.9 4.6E+02 0.0099 26.5 11.1 39 229-268 365-413 (518)
207 COG4357 Zinc finger domain con 36.8 20 0.00043 28.9 1.3 44 231-274 37-94 (105)
208 PF04423 Rad50_zn_hook: Rad50 36.8 12 0.00027 26.1 0.2 10 262-271 22-31 (54)
209 PRK14151 heat shock protein Gr 36.3 1.3E+02 0.0028 26.4 6.5 31 138-168 28-58 (176)
210 PRK14154 heat shock protein Gr 36.3 1.2E+02 0.0026 27.5 6.4 11 138-148 81-91 (208)
211 KOG4217 Nuclear receptors of t 36.3 15 0.00032 37.4 0.7 28 226-259 266-295 (605)
212 KOG3161 Predicted E3 ubiquitin 36.2 10 0.00022 39.8 -0.5 41 229-271 11-57 (861)
213 PF09731 Mitofilin: Mitochondr 36.1 4.8E+02 0.011 26.5 13.9 30 143-172 377-406 (582)
214 PF03980 Nnf1: Nnf1 ; InterPr 36.1 86 0.0019 24.8 5.0 41 121-161 64-104 (109)
215 PRK14147 heat shock protein Gr 36.1 1.3E+02 0.0027 26.4 6.4 14 100-113 25-38 (172)
216 PRK14148 heat shock protein Gr 36.1 1.4E+02 0.003 26.8 6.8 8 103-110 50-57 (195)
217 TIGR03185 DNA_S_dndD DNA sulfu 36.0 3.6E+02 0.0078 28.1 10.8 132 50-187 149-284 (650)
218 PF13851 GAS: Growth-arrest sp 35.9 3.2E+02 0.0068 24.3 10.3 39 130-168 93-131 (201)
219 PRK11448 hsdR type I restricti 35.6 1.4E+02 0.0031 33.5 8.1 32 131-162 171-209 (1123)
220 PF05911 DUF869: Plant protein 35.6 6.1E+02 0.013 27.6 13.0 24 92-115 48-71 (769)
221 PRK14162 heat shock protein Gr 35.6 1.5E+02 0.0033 26.5 6.9 19 92-111 39-57 (194)
222 PRK14164 heat shock protein Gr 35.3 1E+02 0.0023 28.1 6.0 13 101-113 78-90 (218)
223 PF14569 zf-UDP: Zinc-binding 35.1 19 0.00041 27.9 0.9 44 228-271 8-62 (80)
224 PF09744 Jnk-SapK_ap_N: JNK_SA 35.1 3E+02 0.0065 23.8 11.6 28 81-109 39-66 (158)
225 KOG2660 Locus-specific chromos 34.9 8.7 0.00019 37.1 -1.1 46 228-274 14-64 (331)
226 KOG3113 Uncharacterized conser 34.8 31 0.00068 32.4 2.5 47 228-276 110-163 (293)
227 cd00730 rubredoxin Rubredoxin; 34.8 16 0.00034 25.7 0.4 13 262-274 36-48 (50)
228 PF10211 Ax_dynein_light: Axon 34.8 3.2E+02 0.0069 24.1 13.3 27 136-162 126-152 (189)
229 TIGR03752 conj_TIGR03752 integ 33.9 2.6E+02 0.0056 28.6 8.9 6 47-52 20-25 (472)
230 PRK14153 heat shock protein Gr 33.7 1.6E+02 0.0034 26.4 6.7 15 100-114 40-54 (194)
231 PLN03188 kinesin-12 family pro 33.6 5.4E+02 0.012 29.6 11.9 87 91-179 1071-1166(1320)
232 PF12999 PRKCSH-like: Glucosid 33.1 2.8E+02 0.006 24.6 8.0 20 140-159 156-175 (176)
233 PF04111 APG6: Autophagy prote 32.9 4.4E+02 0.0095 25.1 12.6 66 121-186 55-127 (314)
234 PF14645 Chibby: Chibby family 32.8 1.7E+02 0.0036 24.0 6.2 44 136-179 70-113 (116)
235 PF04102 SlyX: SlyX; InterPro 32.6 2E+02 0.0044 21.1 7.4 42 147-188 7-48 (69)
236 PF10571 UPF0547: Uncharacteri 32.4 25 0.00055 21.4 1.0 18 253-270 3-24 (26)
237 PRK14156 heat shock protein Gr 32.3 1.5E+02 0.0031 26.3 6.2 33 137-169 34-66 (177)
238 KOG4643 Uncharacterized coiled 32.0 3.6E+02 0.0078 30.3 10.0 51 134-184 195-245 (1195)
239 KOG3119 Basic region leucine z 32.0 2.6E+02 0.0056 26.1 8.1 23 147-169 218-240 (269)
240 PRK13169 DNA replication intia 32.0 2.8E+02 0.0061 22.6 8.2 40 130-169 15-54 (110)
241 PF04340 DUF484: Protein of un 32.0 2.2E+02 0.0049 25.3 7.6 31 140-177 50-80 (225)
242 PLN02436 cellulose synthase A 31.8 33 0.00072 38.1 2.5 44 228-271 35-89 (1094)
243 PF04380 BMFP: Membrane fusoge 31.8 2.3E+02 0.0049 21.5 7.9 16 88-103 23-38 (79)
244 PRK14141 heat shock protein Gr 31.6 1.5E+02 0.0032 27.0 6.2 10 138-147 60-69 (209)
245 PF09731 Mitofilin: Mitochondr 31.5 5.7E+02 0.012 26.0 14.8 8 94-101 278-285 (582)
246 PF08702 Fib_alpha: Fibrinogen 31.1 3.3E+02 0.0071 23.1 11.4 49 82-134 22-72 (146)
247 PF10481 CENP-F_N: Cenp-F N-te 31.1 2.4E+02 0.0051 27.0 7.6 94 92-188 18-111 (307)
248 PF10764 Gin: Inhibitor of sig 31.0 27 0.00058 24.2 1.1 28 231-260 1-28 (46)
249 KOG0241 Kinesin-like protein [ 30.8 2.2E+02 0.0049 32.0 8.2 43 122-164 381-424 (1714)
250 PRK14127 cell division protein 30.7 1.6E+02 0.0035 24.0 5.7 10 91-100 25-34 (109)
251 PF07227 DUF1423: Protein of u 30.7 1.9E+02 0.0042 29.2 7.4 34 146-179 352-385 (446)
252 PRK14144 heat shock protein Gr 30.3 2E+02 0.0043 25.9 6.8 28 139-166 54-81 (199)
253 PF13240 zinc_ribbon_2: zinc-r 30.3 19 0.00041 21.2 0.2 10 261-270 14-23 (23)
254 PRK13729 conjugal transfer pil 30.3 3E+02 0.0066 28.1 8.8 39 143-181 82-120 (475)
255 KOG0249 LAR-interacting protei 30.1 7.2E+02 0.016 27.1 11.6 83 99-185 169-257 (916)
256 PF14931 IFT20: Intraflagellar 30.0 3.2E+02 0.0069 22.6 11.4 37 138-174 81-117 (120)
257 PRK14145 heat shock protein Gr 30.0 2.3E+02 0.0049 25.5 7.1 23 92-115 45-67 (196)
258 COG2433 Uncharacterized conser 29.9 2.4E+02 0.0051 29.8 8.0 50 135-184 441-493 (652)
259 PRK14163 heat shock protein Gr 29.9 1.8E+02 0.0038 26.6 6.4 16 98-113 45-60 (214)
260 PF10234 Cluap1: Clusterin-ass 29.8 4.8E+02 0.01 24.6 14.4 30 121-150 188-217 (267)
261 KOG2068 MOT2 transcription fac 29.4 32 0.00069 33.3 1.7 45 229-274 249-301 (327)
262 PF14257 DUF4349: Domain of un 29.3 2.2E+02 0.0048 25.9 7.2 32 137-168 162-193 (262)
263 KOG3990 Uncharacterized conser 29.1 2.4E+02 0.0052 26.7 7.2 49 130-185 239-287 (305)
264 TIGR02449 conserved hypothetic 29.1 2.4E+02 0.0053 20.9 8.6 32 134-165 4-35 (65)
265 PF10198 Ada3: Histone acetylt 28.7 3.5E+02 0.0075 22.6 8.9 60 124-187 34-93 (131)
266 KOG4445 Uncharacterized conser 28.6 14 0.00031 35.5 -0.8 42 229-271 115-186 (368)
267 PRK04023 DNA polymerase II lar 28.4 43 0.00094 37.1 2.6 48 228-276 625-679 (1121)
268 PF08172 CASP_C: CASP C termin 28.2 1.7E+02 0.0038 27.1 6.3 41 140-187 89-129 (248)
269 PF08202 MIS13: Mis12-Mtw1 pro 28.1 85 0.0018 29.7 4.3 28 142-169 162-189 (301)
270 PF04999 FtsL: Cell division p 28.1 1.5E+02 0.0032 22.8 5.0 34 132-165 37-70 (97)
271 PRK13182 racA polar chromosome 28.0 4.1E+02 0.009 23.3 8.9 35 123-157 111-145 (175)
272 PF10481 CENP-F_N: Cenp-F N-te 27.9 5.4E+02 0.012 24.6 11.5 19 99-117 38-56 (307)
273 PF08614 ATG16: Autophagy prot 27.8 4.1E+02 0.0089 23.1 10.7 24 138-161 152-175 (194)
274 PF08317 Spc7: Spc7 kinetochor 27.7 5.3E+02 0.012 24.4 13.0 53 132-184 211-263 (325)
275 PF10186 Atg14: UV radiation r 27.7 4.5E+02 0.0098 23.6 16.4 106 80-186 15-126 (302)
276 KOG4218 Nuclear hormone recept 27.6 20 0.00042 35.2 -0.1 39 230-272 16-79 (475)
277 PF12325 TMF_TATA_bd: TATA ele 27.5 3.5E+02 0.0077 22.3 10.5 42 104-154 72-113 (120)
278 KOG4421 Uncharacterized conser 27.5 5.1E+02 0.011 26.0 9.5 36 123-158 577-612 (637)
279 PF04849 HAP1_N: HAP1 N-termin 27.4 5.7E+02 0.012 24.6 16.4 64 123-186 217-283 (306)
280 PRK05892 nucleoside diphosphat 27.3 2.6E+02 0.0056 24.0 6.8 16 139-154 56-71 (158)
281 PF13600 DUF4140: N-terminal d 27.3 1.4E+02 0.003 23.2 4.8 33 131-163 71-103 (104)
282 PF09789 DUF2353: Uncharacteri 27.3 5.8E+02 0.013 24.7 12.9 54 133-186 126-182 (319)
283 PRK14146 heat shock protein Gr 27.2 1.9E+02 0.0041 26.3 6.2 7 104-110 65-71 (215)
284 PLN02678 seryl-tRNA synthetase 27.2 4.7E+02 0.01 26.4 9.5 20 94-113 32-53 (448)
285 PF15272 BBP1_C: Spindle pole 27.1 4.7E+02 0.01 23.6 14.2 100 78-182 48-149 (196)
286 PF07716 bZIP_2: Basic region 26.7 2.2E+02 0.0048 19.7 6.7 37 126-162 13-50 (54)
287 KOG0006 E3 ubiquitin-protein l 26.7 36 0.00079 33.1 1.5 30 228-258 220-251 (446)
288 TIGR03319 YmdA_YtgF conserved 26.4 7.1E+02 0.015 25.5 15.6 9 240-248 244-252 (514)
289 PF14738 PaaSYMP: Solute carri 26.2 4.2E+02 0.0092 22.8 9.1 55 92-146 94-148 (154)
290 PRK00409 recombination and DNA 26.1 8.5E+02 0.019 26.3 13.4 13 87-99 511-523 (782)
291 PRK01343 zinc-binding protein; 26.1 32 0.00069 25.0 0.8 11 261-271 10-20 (57)
292 KOG0996 Structural maintenance 26.0 1E+03 0.023 27.3 16.8 19 131-149 859-877 (1293)
293 KOG1428 Inhibitor of type V ad 25.9 33 0.00072 39.8 1.2 47 227-274 3484-3547(3738)
294 PRK12704 phosphodiesterase; Pr 25.9 7.3E+02 0.016 25.4 15.6 8 240-247 250-257 (520)
295 KOG4809 Rab6 GTPase-interactin 25.9 6.4E+02 0.014 26.5 10.1 72 106-181 296-375 (654)
296 PF07334 IFP_35_N: Interferon- 25.8 1.4E+02 0.0031 22.9 4.4 24 139-162 2-25 (76)
297 PF10805 DUF2730: Protein of u 25.8 3.4E+02 0.0074 21.6 9.4 9 134-142 32-40 (106)
298 KOG2817 Predicted E3 ubiquitin 25.6 29 0.00063 34.3 0.7 43 226-270 331-384 (394)
299 COG5219 Uncharacterized conser 25.3 31 0.00067 38.1 0.9 45 227-272 1467-1524(1525)
300 PLN02320 seryl-tRNA synthetase 25.3 4.6E+02 0.01 26.9 9.2 11 93-103 91-101 (502)
301 PF15066 CAGE1: Cancer-associa 25.2 7.6E+02 0.017 25.4 13.2 58 130-187 453-525 (527)
302 KOG1853 LIS1-interacting prote 25.1 6E+02 0.013 24.2 12.7 64 89-164 16-79 (333)
303 PRK00286 xseA exodeoxyribonucl 25.0 6.6E+02 0.014 24.6 14.7 34 113-146 310-343 (438)
304 PRK02224 chromosome segregatio 24.9 8.7E+02 0.019 26.0 15.5 45 132-176 525-569 (880)
305 PRK09413 IS2 repressor TnpA; R 24.5 1.9E+02 0.0041 23.3 5.2 32 139-170 73-104 (121)
306 PF08654 DASH_Dad2: DASH compl 24.3 3.8E+02 0.0082 21.5 7.5 16 129-144 3-18 (103)
307 PRK09039 hypothetical protein; 24.3 6.5E+02 0.014 24.2 16.0 46 132-177 139-184 (343)
308 PF12777 MT: Microtubule-bindi 24.1 4.7E+02 0.01 25.0 8.7 53 132-184 230-282 (344)
309 KOG2211 Predicted Golgi transp 24.1 9.3E+02 0.02 26.0 12.2 48 89-139 75-126 (797)
310 PF04156 IncA: IncA protein; 24.0 4.6E+02 0.0099 22.4 14.2 49 133-181 126-174 (191)
311 KOG0977 Nuclear envelope prote 23.9 8.4E+02 0.018 25.4 14.3 67 116-182 145-214 (546)
312 KOG0994 Extracellular matrix g 23.9 1.2E+03 0.026 27.2 14.9 44 133-176 1608-1651(1758)
313 PF08549 SWI-SNF_Ssr4: Fungal 23.8 1.6E+02 0.0034 31.3 5.6 27 128-154 369-395 (669)
314 smart00734 ZnF_Rad18 Rad18-lik 23.8 43 0.00093 20.2 0.9 10 261-270 2-11 (26)
315 PF05529 Bap31: B-cell recepto 23.6 4.8E+02 0.01 22.5 10.4 14 170-183 173-186 (192)
316 PF14662 CCDC155: Coiled-coil 23.6 5.5E+02 0.012 23.1 12.1 79 102-186 38-116 (193)
317 PF02403 Seryl_tRNA_N: Seryl-t 23.5 3.6E+02 0.0077 21.0 10.3 85 97-185 6-101 (108)
318 PF06156 DUF972: Protein of un 23.4 3.4E+02 0.0074 21.9 6.4 52 127-185 5-56 (107)
319 COG1579 Zn-ribbon protein, pos 23.4 6E+02 0.013 23.5 12.5 34 228-268 196-229 (239)
320 COG5484 Uncharacterized conser 23.3 6.4E+02 0.014 23.9 9.2 127 31-177 83-213 (279)
321 KOG0971 Microtubule-associated 23.2 1.1E+03 0.024 26.5 13.2 48 137-184 448-502 (1243)
322 KOG0608 Warts/lats-like serine 22.7 2.3E+02 0.005 30.6 6.5 56 80-135 570-625 (1034)
323 KOG4796 RNA polymerase II elon 22.7 2.8E+02 0.0061 28.9 6.9 86 96-188 493-590 (604)
324 TIGR01069 mutS2 MutS2 family p 22.6 7.4E+02 0.016 26.7 10.5 11 89-99 508-518 (771)
325 smart00502 BBC B-Box C-termina 22.5 3.6E+02 0.0078 20.6 11.9 23 87-109 33-55 (127)
326 PF04728 LPP: Lipoprotein leuc 22.2 3.1E+02 0.0068 19.8 7.6 31 132-162 5-35 (56)
327 PF06906 DUF1272: Protein of u 21.8 53 0.0011 23.9 1.2 20 252-271 31-52 (57)
328 PRK06342 transcription elongat 21.8 1.6E+02 0.0035 25.4 4.5 12 87-98 36-47 (160)
329 KOG0298 DEAD box-containing he 21.5 6.6E+02 0.014 29.0 9.9 44 228-272 1152-1200(1394)
330 KOG4484 Uncharacterized conser 21.5 5.9E+02 0.013 22.7 10.8 70 85-154 27-103 (199)
331 PF00301 Rubredoxin: Rubredoxi 21.3 48 0.001 23.0 0.9 11 228-238 33-43 (47)
332 PF13118 DUF3972: Protein of u 21.2 5E+02 0.011 21.8 7.1 47 130-183 78-124 (126)
333 PHA01750 hypothetical protein 21.2 3.7E+02 0.008 20.3 6.2 17 137-153 49-65 (75)
334 PF13248 zf-ribbon_3: zinc-rib 21.1 36 0.00079 20.3 0.2 9 261-269 17-25 (26)
335 PRK11020 hypothetical protein; 21.1 4.9E+02 0.011 21.6 7.6 48 122-169 23-71 (118)
336 PF11505 DUF3216: Protein of u 21.0 4.2E+02 0.0092 21.2 6.2 39 92-136 21-61 (97)
337 PF11365 DUF3166: Protein of u 20.9 3.5E+02 0.0075 21.7 5.8 36 132-167 10-45 (96)
338 TIGR01005 eps_transp_fam exopo 20.7 1E+03 0.022 25.1 13.9 30 157-186 375-404 (754)
339 PF10886 DUF2685: Protein of u 20.7 50 0.0011 23.8 0.9 17 260-276 1-17 (54)
340 KOG1815 Predicted E3 ubiquitin 20.6 40 0.00086 33.6 0.5 32 227-259 68-100 (444)
341 PRK10963 hypothetical protein; 20.6 3.9E+02 0.0084 24.0 6.9 17 141-157 48-64 (223)
342 PF07800 DUF1644: Protein of u 20.5 53 0.0012 28.7 1.2 17 260-276 80-96 (162)
343 PF06364 DUF1068: Protein of u 20.5 6.1E+02 0.013 22.5 9.3 31 104-134 95-125 (176)
344 KOG4191 Histone acetyltransfer 20.4 9.4E+02 0.02 24.7 11.3 93 80-179 403-496 (516)
345 KOG0994 Extracellular matrix g 20.3 1.4E+03 0.03 26.6 14.3 87 97-183 1560-1672(1758)
346 PF10073 DUF2312: Uncharacteri 20.2 3.4E+02 0.0075 20.7 5.4 34 129-162 3-36 (74)
No 1
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-37 Score=275.11 Aligned_cols=186 Identities=41% Similarity=0.759 Sum_probs=162.4
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 82 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 82 ~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
++++++++|..|||+|+..|+++|++.+.+.+++|++.++.++|..+.++||+|++||++++++|++|+++++++.+|++
T Consensus 15 ~~~~~~~~q~~~id~f~~~~~~~l~~~~~~~~~~~~~~~l~~~e~~~~~~l~~k~~ei~~~~~~~~~l~~~~~~~~~e~~ 94 (207)
T KOG1100|consen 15 DLASDIQRQSDEIDRFLKIQGEQLRRELEENRQRELRNLLKAVEEALVKKLREKDEEIERIGNLNWELEERVKSLYVEAQ 94 (207)
T ss_pred cceeecccccchhhHHHHhhHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhhcchhHHHhcccccceehhhhhhhhhhHH
Confidence 68888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcC----c--ccccCCCCCCCccchhh-hhccccCCCCCCCCCccccccccccccc
Q 023682 162 NWHYRAKYNESVVNLLKSNLQQAISQG----A--DQGKEGFGDSEVDDAAS-YINTNNYLTVPSGPGKSISRNHQMICRA 234 (279)
Q Consensus 162 aWq~~A~~nea~a~~Lr~~Lqq~~~~~----~--~~~~eg~g~se~dDa~s-~c~~~~~~~l~~~~~~~~~~~~~~~C~i 234 (279)
.|+.+|++|++++++|+.+|+|++.+. . ..+..+.|+.+++|+.| +.++.. ..+.....|+.
T Consensus 95 ~w~~~a~~ne~~~~~l~~nl~q~~~~~~~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~-----------~~~~~~~~Cr~ 163 (207)
T KOG1100|consen 95 IWRDRAQTNEATVNSLRTNLDQVLAQCPASAPAEERGQKSCGDREADDGKSSYVDPSV-----------DNFKRMRSCRK 163 (207)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHhcccccCchhhhccccCccccccccccccchhh-----------hhhhcccccee
Confidence 999999999999999999999999884 1 11223355556666665 322221 11222233999
Q ss_pred ccccccceEEecCCCcccchhhHhcCCCCCCCcccccceEEEee
Q 023682 235 CKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHL 278 (279)
Q Consensus 235 C~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~ 278 (279)
|++++++|+|+||+|+|+|..|...+..||+|+.+++.+++||+
T Consensus 164 C~~~~~~VlllPCrHl~lC~~C~~~~~~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 164 CGEREATVLLLPCRHLCLCGICDESLRICPICRSPKTSSVEVNF 207 (207)
T ss_pred cCcCCceEEeecccceEecccccccCccCCCCcChhhceeeccC
Confidence 99999999999999999999999889999999999999999986
No 2
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=6.4e-13 Score=125.81 Aligned_cols=52 Identities=27% Similarity=0.765 Sum_probs=47.7
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhcC----CCCCCCcccccceEEEee
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNASVLVHL 278 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~v~~ 278 (279)
.+...|+||++..+++++|||||+|+|..|+..+ ..||+||.+|...+.|++
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 3567899999999999999999999999999986 579999999999999875
No 3
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.10 E-value=2.9e-11 Score=84.41 Aligned_cols=43 Identities=33% Similarity=0.930 Sum_probs=38.6
Q ss_pred cccccccccccceEEecCCCcccchhhHhcC----CCCCCCcccccc
Q 023682 230 MICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNA 272 (279)
Q Consensus 230 ~~C~iC~~~~~~v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~ 272 (279)
..|.||++++.+++++||||.++|..|...+ ..||+||.+|+.
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcC
Confidence 4799999999999999999999999999886 999999999975
No 4
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6.5e-12 Score=89.60 Aligned_cols=50 Identities=24% Similarity=0.687 Sum_probs=45.7
Q ss_pred cccccccccccceEEecCCCcccchhhHhcC-----CCCCCCcccccceEEEeeC
Q 023682 230 MICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 230 ~~C~iC~~~~~~v~llPC~HlclC~~C~~~l-----~~CPvCr~~i~~~v~v~~S 279 (279)
.+|.||++++.+.||..|||+|+|.+|.-.+ ..||+||++|...|+.|-|
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~s 62 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYRS 62 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhcC
Confidence 5799999999999999999999999999764 6799999999999988765
No 5
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1e-10 Score=108.50 Aligned_cols=51 Identities=20% Similarity=0.598 Sum_probs=48.7
Q ss_pred ccccccccccccceEEecCCCcccchhhHhcCCCCCCCcccccceEEEeeC
Q 023682 229 QMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 279 (279)
...|+||++.+++.+||||||++.|..|...|..|||||+.|...++||-+
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMNECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccccCchHHHHHHHHHhhhcC
Confidence 678999999999999999999999999999999999999999999999853
No 6
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=6.2e-10 Score=105.80 Aligned_cols=52 Identities=27% Similarity=0.632 Sum_probs=48.7
Q ss_pred cccccccccccccceEEecCCCcccchhhHhcCCCCCCCcccccceEEEeeC
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 279 (279)
....|+||.+++.+.+|+||||+|+|..|...+..||+||..|...+++|.|
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~CPvCR~rI~~~~k~y~~ 355 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQCPVCRQRIRLVRKRYRS 355 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEEchHHHhhCCCCchhHHHHHHHHHHhcC
Confidence 4557999999999999999999999999999999999999999999998865
No 7
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.26 E-value=1.3e-05 Score=82.68 Aligned_cols=48 Identities=21% Similarity=0.608 Sum_probs=42.2
Q ss_pred cccccccccccccccccceEEecCCCcccchhhHhc-----CCCCCCCcccccc
Q 023682 224 ISRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 272 (279)
Q Consensus 224 ~~~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 272 (279)
..++....|.+|.+++.++|+.-|+|+ ||..|... .++||.|..+|..
T Consensus 638 k~yK~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFga 690 (698)
T KOG0978|consen 638 KEYKELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGA 690 (698)
T ss_pred HHHHhceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCc
Confidence 345667789999999999999999998 99999866 5999999999865
No 8
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.79 E-value=1.3e-05 Score=54.57 Aligned_cols=36 Identities=31% Similarity=0.819 Sum_probs=31.0
Q ss_pred cccccccc---cceEEecCCCcccchhhHhcCC----CCCCCcc
Q 023682 232 CRACKAKE---ASVLLMPCRHLCLCKDCDVLVA----VCPVCQF 268 (279)
Q Consensus 232 C~iC~~~~---~~v~llPC~HlclC~~C~~~l~----~CPvCr~ 268 (279)
|.+|+... ...+|++|||. +|..|...+. .||+|++
T Consensus 2 C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence 77888766 46889999999 9999999876 9999984
No 9
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.74 E-value=2.9e-05 Score=68.97 Aligned_cols=44 Identities=25% Similarity=0.569 Sum_probs=37.6
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc--------------------CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL--------------------VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~--------------------l~~CPvCr~~i~~ 272 (279)
....|.||++...+-++.||||. +|..|... ...||+|+.++..
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~ 80 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSE 80 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCCh
Confidence 34679999999999999999998 99999842 1479999999865
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=97.71 E-value=1.7e-05 Score=52.41 Aligned_cols=34 Identities=35% Similarity=0.920 Sum_probs=28.1
Q ss_pred cccccccccce-EEecCCCcccchhhHhc----CCCCCCC
Q 023682 232 CRACKAKEASV-LLMPCRHLCLCKDCDVL----VAVCPVC 266 (279)
Q Consensus 232 C~iC~~~~~~v-~llPC~HlclC~~C~~~----l~~CPvC 266 (279)
|.||++...+. +++||||. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence 78999999887 79999999 99999865 4789987
No 11
>PHA02929 N1R/p28-like protein; Provisional
Probab=97.68 E-value=3.4e-05 Score=70.75 Aligned_cols=47 Identities=26% Similarity=0.586 Sum_probs=37.1
Q ss_pred ccccccccccccc--------eEEecCCCcccchhhHhc----CCCCCCCcccccceEEE
Q 023682 229 QMICRACKAKEAS--------VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLV 276 (279)
Q Consensus 229 ~~~C~iC~~~~~~--------v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v 276 (279)
...|.||++.... .++.||+|. +|..|-.. ...||+||.++...+..
T Consensus 174 ~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~ 232 (238)
T PHA02929 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKS 232 (238)
T ss_pred CCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeee
Confidence 4579999986322 466789997 99999854 47999999999887764
No 12
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.63 E-value=1.7e-05 Score=77.00 Aligned_cols=49 Identities=29% Similarity=0.697 Sum_probs=42.4
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc------CCCCCCCcccccceEEEe
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL------VAVCPVCQFVKNASVLVH 277 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~------l~~CPvCr~~i~~~v~v~ 277 (279)
..-.|+||-++..+|-+-||||+ +|..|-.. -..||.||..|.++=.|.
T Consensus 368 TFeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vi 422 (563)
T KOG1785|consen 368 TFELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVI 422 (563)
T ss_pred hHHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEecccccee
Confidence 44689999999999999999999 99999644 479999999998876554
No 13
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.51 E-value=6.7e-05 Score=47.25 Aligned_cols=34 Identities=29% Similarity=0.946 Sum_probs=29.9
Q ss_pred cccccccccceEEecCCCcccchhhHhc-----CCCCCCC
Q 023682 232 CRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVC 266 (279)
Q Consensus 232 C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvC 266 (279)
|.||++.....+++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence 7899999999999999999 99999864 4679987
No 14
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.44 E-value=4.3e-05 Score=51.61 Aligned_cols=36 Identities=31% Similarity=0.785 Sum_probs=29.4
Q ss_pred ccccccccc---cceEEecCCCcccchhhHhc----CCCCCCCc
Q 023682 231 ICRACKAKE---ASVLLMPCRHLCLCKDCDVL----VAVCPVCQ 267 (279)
Q Consensus 231 ~C~iC~~~~---~~v~llPC~HlclC~~C~~~----l~~CPvCr 267 (279)
.|.||++.- ..++.+||+|. +|..|... -..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence 589998855 57889999998 99999765 38999997
No 15
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=6.1e-05 Score=70.33 Aligned_cols=49 Identities=24% Similarity=0.581 Sum_probs=40.4
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccceEEEe
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLVH 277 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v~ 277 (279)
..+.|.+|+++..+--..||||+ +|..|--. -..||+||..+.-+-.|+
T Consensus 238 a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 238 ATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcceee
Confidence 45789999999999888999999 99999643 478999999887655443
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=97.39 E-value=0.00014 Score=47.35 Aligned_cols=39 Identities=31% Similarity=0.831 Sum_probs=30.4
Q ss_pred ccccccccc-cceEEecCCCcccchhhHhc-----CCCCCCCcccc
Q 023682 231 ICRACKAKE-ASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVK 270 (279)
Q Consensus 231 ~C~iC~~~~-~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i 270 (279)
.|.+|++.. ..+.+.||+|. +|..|... ...||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence 489999987 45555569999 99999863 36799999753
No 17
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.33 E-value=0.0001 Score=52.92 Aligned_cols=44 Identities=25% Similarity=0.551 Sum_probs=37.8
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc--CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL--VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~--l~~CPvCr~~i~~ 272 (279)
....|..|......-+++||+|+ +|..|... ...||+|..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 6 PEQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERYNGCPFCGTPFEF 51 (55)
T ss_pred cceeEEEccccccccccccccce-eeccccChhhccCCCCCCCcccC
Confidence 34579999999888999999999 89999765 6899999998864
No 18
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.25 E-value=0.00018 Score=65.37 Aligned_cols=45 Identities=24% Similarity=0.536 Sum_probs=38.2
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc-------CCCCCCCcccccce
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL-------VAVCPVCQFVKNAS 273 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-------l~~CPvCr~~i~~~ 273 (279)
....|-||++...+-|+-+|||| +|..|--. ...||||+..|...
T Consensus 46 ~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~ 97 (230)
T KOG0823|consen 46 GFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSID 97 (230)
T ss_pred CceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccc
Confidence 45679999999999999999999 99999643 37889999877643
No 19
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=97.19 E-value=0.00014 Score=48.13 Aligned_cols=34 Identities=35% Similarity=0.961 Sum_probs=29.3
Q ss_pred cccccccccceE-EecCCCcccchhhHhc------CCCCCCC
Q 023682 232 CRACKAKEASVL-LMPCRHLCLCKDCDVL------VAVCPVC 266 (279)
Q Consensus 232 C~iC~~~~~~v~-llPC~HlclC~~C~~~------l~~CPvC 266 (279)
|.||.+.....+ ++||+|. +|..|... ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence 789999888877 9999999 99999765 3679987
No 20
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.00015 Score=63.65 Aligned_cols=48 Identities=21% Similarity=0.479 Sum_probs=36.6
Q ss_pred cccccccccccceE--EecCCCcccchhhHhc----CCCCCCCccccc--ceEEEee
Q 023682 230 MICRACKAKEASVL--LMPCRHLCLCKDCDVL----VAVCPVCQFVKN--ASVLVHL 278 (279)
Q Consensus 230 ~~C~iC~~~~~~v~--llPC~HlclC~~C~~~----l~~CPvCr~~i~--~~v~v~~ 278 (279)
..|.||++...--+ ---|||+ ||..|... ..+||+|+..|+ .+..|||
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred cCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence 57999998665444 3589999 99999977 389999996554 4556664
No 21
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.12 E-value=0.00024 Score=69.59 Aligned_cols=48 Identities=23% Similarity=0.543 Sum_probs=40.4
Q ss_pred cccccccccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 224 ISRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 224 ~~~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
..+.....|.||.+....-++.||+|. +|..|... ...||+|+.++..
T Consensus 21 ~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 21 YPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence 445677899999999888888999999 99999864 3579999998764
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=96.75 E-value=0.00035 Score=63.46 Aligned_cols=48 Identities=23% Similarity=0.526 Sum_probs=36.0
Q ss_pred ccccccccccccc---------cceEEecCCCcccchhhHhcC----------CCCCCCcccccceEE
Q 023682 227 NHQMICRACKAKE---------ASVLLMPCRHLCLCKDCDVLV----------AVCPVCQFVKNASVL 275 (279)
Q Consensus 227 ~~~~~C~iC~~~~---------~~v~llPC~HlclC~~C~~~l----------~~CPvCr~~i~~~v~ 275 (279)
.....|.||++.. .--+|.||+|. +|..|-..- ..||+||..+...+.
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 3456899999852 12578899999 999997541 349999999885543
No 23
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=96.68 E-value=0.00089 Score=45.31 Aligned_cols=34 Identities=29% Similarity=0.813 Sum_probs=25.6
Q ss_pred cccccccccceEEecCCCcccchhhHhcC--------CCCCCC
Q 023682 232 CRACKAKEASVLLMPCRHLCLCKDCDVLV--------AVCPVC 266 (279)
Q Consensus 232 C~iC~~~~~~v~llPC~HlclC~~C~~~l--------~~CPvC 266 (279)
|.||++-..+=+.+||||. +|..|.... -.||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence 7899999999899999999 999998662 368887
No 24
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.00066 Score=59.75 Aligned_cols=41 Identities=29% Similarity=0.775 Sum_probs=35.3
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhcC----CCCCCCcc
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQF 268 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l----~~CPvCr~ 268 (279)
.....|.||++....-.++||+|. +|..|.... -.||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence 356789999998887799999999 999999774 58999993
No 25
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.001 Score=66.44 Aligned_cols=43 Identities=23% Similarity=0.651 Sum_probs=38.0
Q ss_pred ccccccccccccceEEecCCCcccchhhHhc---------CCCCCCCcccccc
Q 023682 229 QMICRACKAKEASVLLMPCRHLCLCKDCDVL---------VAVCPVCQFVKNA 272 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~llPC~HlclC~~C~~~---------l~~CPvCr~~i~~ 272 (279)
...|+||++.+..-++.-|||. +|-.|--. ...||+|+..|.-
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~ 237 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITL 237 (513)
T ss_pred CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence 6789999999999999999999 99999543 3799999999887
No 26
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=96.34 E-value=0.0025 Score=45.46 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=35.0
Q ss_pred cccccccccccceEEecCCCcccchhhHhcC----CCCCCCcccccc
Q 023682 230 MICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNA 272 (279)
Q Consensus 230 ~~C~iC~~~~~~v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~ 272 (279)
..|.+|++--.+=++.||||. +|..|.... ..||+|+.+++.
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 369999998888788999998 899998753 689999998743
No 27
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.32 E-value=0.0014 Score=60.74 Aligned_cols=41 Identities=27% Similarity=0.716 Sum_probs=35.3
Q ss_pred ccccccccccccceEEecCCCcccchhhHhc------CCCCCCCcccc
Q 023682 229 QMICRACKAKEASVLLMPCRHLCLCKDCDVL------VAVCPVCQFVK 270 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~llPC~HlclC~~C~~~------l~~CPvCr~~i 270 (279)
...|.+|.+.+-+-...||||+ +|-.|--. ...||+||+..
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~ 261 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKV 261 (271)
T ss_pred ccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhc
Confidence 5679999999999999999999 89998644 46799999854
No 28
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=96.13 E-value=0.002 Score=44.06 Aligned_cols=27 Identities=37% Similarity=1.009 Sum_probs=16.7
Q ss_pred cccccccccc----eEEecCCCcccchhhHhcC
Q 023682 232 CRACKAKEAS----VLLMPCRHLCLCKDCDVLV 260 (279)
Q Consensus 232 C~iC~~~~~~----v~llPC~HlclC~~C~~~l 260 (279)
|.||++ ..+ -++|||||. +|..|...+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l 31 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKL 31 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-E-EEHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHH
Confidence 788888 655 577899999 999998764
No 29
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=96.09 E-value=0.0025 Score=60.04 Aligned_cols=47 Identities=23% Similarity=0.523 Sum_probs=40.1
Q ss_pred ccccccccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 225 SRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 225 ~~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
.+.....|.||...-.--++-||||. ||.-|... -..||+||.+...
T Consensus 21 ~LDs~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 21 GLDSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred cchhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence 34566789999999999999999999 99999876 3899999987654
No 30
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.99 E-value=0.0046 Score=59.54 Aligned_cols=47 Identities=30% Similarity=0.742 Sum_probs=39.9
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhcC------CCCCCCcccccceE
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV------AVCPVCQFVKNASV 274 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l------~~CPvCr~~i~~~v 274 (279)
.+...|.||-..-.-+.++||+|. +|..|+-.+ ..||+|+..-...+
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred cccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence 356789999999999999999999 999999774 79999998655443
No 31
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.0068 Score=57.43 Aligned_cols=43 Identities=23% Similarity=0.563 Sum_probs=34.6
Q ss_pred ccccccccccccc---ceEEecCCCcccchhhHhc-----CCCCCCCccccc
Q 023682 228 HQMICRACKAKEA---SVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKN 271 (279)
Q Consensus 228 ~~~~C~iC~~~~~---~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~ 271 (279)
.+..|.||++... .++.+||.|. +=..|.++ -.+||+||+++.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence 4578999998543 4788899998 88889876 379999999874
No 32
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=95.64 E-value=0.0029 Score=60.66 Aligned_cols=48 Identities=23% Similarity=0.547 Sum_probs=41.0
Q ss_pred ccccccccccccccccceEEecCCCcccchhhHhcC----CCCCCCcccccce
Q 023682 225 SRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNAS 273 (279)
Q Consensus 225 ~~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~~ 273 (279)
.+.+...|-||++=..--++.||+|. +|.-|.... ..||.|+.+++.+
T Consensus 19 ~lD~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~Es 70 (442)
T KOG0287|consen 19 TLDDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTES 70 (442)
T ss_pred hhHHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccchh
Confidence 34566789999999999999999999 999998763 8999999887654
No 33
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.0058 Score=58.97 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=36.3
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhc-C---CCCCCCccccc
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-V---AVCPVCQFVKN 271 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-l---~~CPvCr~~i~ 271 (279)
.+...|.||+..+.+.+|-||+|. .|..|... + +.|-.|...+.
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceee
Confidence 356789999999999999999999 79999876 3 66777766554
No 34
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=94.41 E-value=0.027 Score=42.38 Aligned_cols=27 Identities=26% Similarity=0.775 Sum_probs=20.6
Q ss_pred cceEEecCCCcccchhhHhc----CCCCCCCc
Q 023682 240 ASVLLMPCRHLCLCKDCDVL----VAVCPVCQ 267 (279)
Q Consensus 240 ~~v~llPC~HlclC~~C~~~----l~~CPvCr 267 (279)
..+++.||||. +-..|-.. -..||+||
T Consensus 43 ~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 43 CPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp S-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred cceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence 45677899999 89999764 47999997
No 35
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.23 E-value=0.017 Score=58.69 Aligned_cols=43 Identities=26% Similarity=0.588 Sum_probs=36.3
Q ss_pred cccccccccccccc-----eEEecCCCcccchhhHhc----CCCCCCCccccc
Q 023682 228 HQMICRACKAKEAS-----VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN 271 (279)
Q Consensus 228 ~~~~C~iC~~~~~~-----v~llPC~HlclC~~C~~~----l~~CPvCr~~i~ 271 (279)
....|.||.+.-.. ...+||+|. ++..|-.. ...||+||..+.
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence 35689999998887 799999999 99999765 599999999443
No 36
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=93.73 E-value=0.028 Score=41.77 Aligned_cols=43 Identities=28% Similarity=0.626 Sum_probs=23.0
Q ss_pred ccccccccccccccc-eEEecCCCcccchhhHhcC--CCCCCCcccc
Q 023682 227 NHQMICRACKAKEAS-VLLMPCRHLCLCKDCDVLV--AVCPVCQFVK 270 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~-v~llPC~HlclC~~C~~~l--~~CPvCr~~i 270 (279)
.....|.+|.+--.. |.+--|.|. +|..|...- ..||+|+.|-
T Consensus 5 e~lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~~~~CPvC~~Pa 50 (65)
T PF14835_consen 5 EELLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCIGSECPVCHTPA 50 (65)
T ss_dssp HHTTS-SSS-S--SS-B---SSS---B-TTTGGGGTTTB-SSS--B-
T ss_pred HHhcCCcHHHHHhcCCceeccCccH-HHHHHhHHhcCCCCCCcCChH
Confidence 345679999987664 457799999 999999773 7899999875
No 37
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.049 Score=51.00 Aligned_cols=44 Identities=20% Similarity=0.538 Sum_probs=36.1
Q ss_pred cccccccccccccc-ceEEecCCCcccchhhHhcC------CCCCCCccccc
Q 023682 227 NHQMICRACKAKEA-SVLLMPCRHLCLCKDCDVLV------AVCPVCQFVKN 271 (279)
Q Consensus 227 ~~~~~C~iC~~~~~-~v~llPC~HlclC~~C~~~l------~~CPvCr~~i~ 271 (279)
+...+|++|++.+. -.+..||||. .|..|.... -.||.|..+..
T Consensus 237 t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCc
Confidence 35678999999888 4777889997 899998762 38999998765
No 38
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=93.10 E-value=0.083 Score=50.46 Aligned_cols=50 Identities=6% Similarity=-0.079 Sum_probs=43.4
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhc--CCCCCCCcccccceEEE
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL--VAVCPVCQFVKNASVLV 276 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~--l~~CPvCr~~i~~~v~v 276 (279)
-....|.+|..+-.+.++.||+|.-+|.+|+.. -..||+|..-....|.|
T Consensus 341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhhcccccccCceeeeEeecCCcccChhhhhhcccCCccccccccceeeeec
Confidence 355789999999999999999999999999975 37999999877776665
No 39
>PF04641 Rtf2: Rtf2 RING-finger
Probab=93.03 E-value=0.08 Score=48.92 Aligned_cols=46 Identities=22% Similarity=0.427 Sum_probs=37.2
Q ss_pred cccccccccccc----ccceEEecCCCcccchhhHhcCC---CCCCCcccccce
Q 023682 227 NHQMICRACKAK----EASVLLMPCRHLCLCKDCDVLVA---VCPVCQFVKNAS 273 (279)
Q Consensus 227 ~~~~~C~iC~~~----~~~v~llPC~HlclC~~C~~~l~---~CPvCr~~i~~~ 273 (279)
.....|+|.+.. ..-|+|.||||. ++..+...+. .||+|..++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELKKSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhcccccccccCCccccC
Confidence 355689998753 457888999998 8999988876 899999998754
No 40
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.055 Score=52.71 Aligned_cols=43 Identities=26% Similarity=0.601 Sum_probs=30.1
Q ss_pred ccccccccccccc-------------cceEEecCCCcccchhhHh----cCCCCCCCcccc
Q 023682 227 NHQMICRACKAKE-------------ASVLLMPCRHLCLCKDCDV----LVAVCPVCQFVK 270 (279)
Q Consensus 227 ~~~~~C~iC~~~~-------------~~v~llPC~HlclC~~C~~----~l~~CPvCr~~i 270 (279)
.+.+.|.||++.- ..--=+||||. +=-.|-. +-.+||+||.|+
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence 3567899999971 11134799996 5555643 358999999984
No 41
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=0.08 Score=51.23 Aligned_cols=43 Identities=23% Similarity=0.566 Sum_probs=31.8
Q ss_pred ccccccccccc---ceEEecCCCcccchhhHhc-----CCCCCCCcccccce
Q 023682 230 MICRACKAKEA---SVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNAS 273 (279)
Q Consensus 230 ~~C~iC~~~~~---~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~~ 273 (279)
..|.||.+.-. .+.+|||.|- +=..|.+. -..||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCC
Confidence 47999998443 4677999998 56667654 25699999987654
No 42
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.20 E-value=0.077 Score=50.15 Aligned_cols=45 Identities=22% Similarity=0.502 Sum_probs=38.9
Q ss_pred cccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccceEE
Q 023682 230 MICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVL 275 (279)
Q Consensus 230 ~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~ 275 (279)
..|-||+.-..+=|+--|+|. +|..|+.. -..|++|...+.++.-
T Consensus 242 f~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~~ 290 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSFN 290 (313)
T ss_pred ccccccccccccchhhcCCce-eehhhhccccccCCcceecccccccccc
Confidence 359999998888888899999 99999976 3789999999988754
No 43
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.17 E-value=0.14 Score=47.43 Aligned_cols=44 Identities=23% Similarity=0.421 Sum_probs=36.2
Q ss_pred ccccccccccc----ccceEEecCCCcccchhhHhcC----CCCCCCcccccc
Q 023682 228 HQMICRACKAK----EASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~----~~~v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~ 272 (279)
....|.+|.+. ..+++|-||||. +|.+|...+ ..||+|..+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCCCcCcc
Confidence 44689999984 457899999998 899999885 799999887653
No 44
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=91.12 E-value=0.064 Score=48.27 Aligned_cols=46 Identities=26% Similarity=0.595 Sum_probs=39.2
Q ss_pred cccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccceEEE
Q 023682 230 MICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLV 276 (279)
Q Consensus 230 ~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v 276 (279)
..|.||...-.+-|+-.|||. +|..|+.. -..|.+|.....+...|
T Consensus 197 F~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~V 246 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFWV 246 (259)
T ss_pred eeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhccceeH
Confidence 479999999888888899999 99999976 38999999887766543
No 45
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.41 E-value=0.12 Score=50.89 Aligned_cols=31 Identities=26% Similarity=0.683 Sum_probs=26.1
Q ss_pred ccccccccccccc---ceEEecCCCcccchhhHhc
Q 023682 228 HQMICRACKAKEA---SVLLMPCRHLCLCKDCDVL 259 (279)
Q Consensus 228 ~~~~C~iC~~~~~---~v~llPC~HlclC~~C~~~ 259 (279)
....|.||++... +++++||+|+ +|..|...
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kd 216 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKD 216 (445)
T ss_pred hcccceeeehhhcCcceeeecccchH-HHHHHHHH
Confidence 3457999999665 5999999999 99999766
No 46
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=0.16 Score=49.24 Aligned_cols=47 Identities=19% Similarity=0.458 Sum_probs=37.6
Q ss_pred cccccccccccccceE-----E---ecCCCcccchhhHhc-----------CCCCCCCcccccceEE
Q 023682 228 HQMICRACKAKEASVL-----L---MPCRHLCLCKDCDVL-----------VAVCPVCQFVKNASVL 275 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~-----l---lPC~HlclC~~C~~~-----------l~~CPvCr~~i~~~v~ 275 (279)
....|-||++.-.... | .||.|- +|..|... ...||.||.+....+.
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~p 225 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNP 225 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCccccccc
Confidence 4678999999777666 4 679998 99999754 3799999998776553
No 47
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.25 E-value=0.18 Score=49.73 Aligned_cols=45 Identities=22% Similarity=0.562 Sum_probs=36.9
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
.....|.||+...-.-+..||||. +|..|... -..||.||.++..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence 567789999997777666799999 99999443 4899999988764
No 48
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=89.13 E-value=0.11 Score=54.90 Aligned_cols=47 Identities=19% Similarity=0.345 Sum_probs=35.8
Q ss_pred ccccccccccccceEE---ecCCCcccchhhHhc----CCCCCCCcccccceEEE
Q 023682 229 QMICRACKAKEASVLL---MPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLV 276 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~l---lPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v 276 (279)
...|.+|.....+-+. .||.|+ ||..|... ..+||+||..+..++..
T Consensus 123 ~~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 123 ENQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence 4567777766555443 699999 99999876 58999999988776643
No 49
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=88.54 E-value=0.24 Score=47.12 Aligned_cols=44 Identities=23% Similarity=0.639 Sum_probs=34.3
Q ss_pred ccccccccccccccceEEecC--CCcccchhhH-hcCCCCCCCcccccc
Q 023682 227 NHQMICRACKAKEASVLLMPC--RHLCLCKDCD-VLVAVCPVCQFVKNA 272 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC--~HlclC~~C~-~~l~~CPvCr~~i~~ 272 (279)
.+...|+||+..-.-=++ -| ||+ +|..|. .....||.|+.++..
T Consensus 46 ~~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccce-ecCCCcE-ehhhhhhhhcccCCcccccccc
Confidence 356789999986554443 46 799 899999 556999999999883
No 50
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=88.15 E-value=0.15 Score=50.06 Aligned_cols=41 Identities=22% Similarity=0.426 Sum_probs=0.0
Q ss_pred cccceEEecCCCccc----chhhHhc--------CCCCCCCcccccc---eEEEee
Q 023682 238 KEASVLLMPCRHLCL----CKDCDVL--------VAVCPVCQFVKNA---SVLVHL 278 (279)
Q Consensus 238 ~~~~v~llPC~Hlcl----C~~C~~~--------l~~CPvCr~~i~~---~v~v~~ 278 (279)
.+.+.+|-||||+|. =.++.-. -..||.|-.++.+ .|+++|
T Consensus 356 ~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~vrLiF 411 (416)
T PF04710_consen 356 GPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGYVRLIF 411 (416)
T ss_dssp --------------------------------------------------------
T ss_pred CCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccCCCCceEEEE
Confidence 557889999999852 1112111 2699999999876 566654
No 51
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=87.65 E-value=0.22 Score=34.95 Aligned_cols=41 Identities=27% Similarity=0.771 Sum_probs=24.0
Q ss_pred ccccccccccceEEecCC-CcccchhhHhcC----CCCCCCcccccceE
Q 023682 231 ICRACKAKEASVLLMPCR-HLCLCKDCDVLV----AVCPVCQFVKNASV 274 (279)
Q Consensus 231 ~C~iC~~~~~~v~llPC~-HlclC~~C~~~l----~~CPvCr~~i~~~v 274 (279)
-|+.|+-...+.+ -|. |+ +|-.|-..| ..||+|..+....+
T Consensus 4 nCKsCWf~~k~Li--~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 4 NCKSCWFANKGLI--KCSDHY-LCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ---SS-S--SSEE--E-SS-E-EEHHHHHHT-SSSSEETTTTEE----S
T ss_pred cChhhhhcCCCee--eecchh-HHHHHHHHHhccccCCCcccCcCcccc
Confidence 4899998877765 476 76 999999886 79999998876544
No 52
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.16 E-value=41 Score=34.01 Aligned_cols=83 Identities=19% Similarity=0.218 Sum_probs=64.5
Q ss_pred HHHHHHHHhHHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 93 EFDQYIKVQEEYLAK----GVQDMKQ-RHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRA 167 (279)
Q Consensus 93 EiD~~i~~q~e~lr~----~l~e~r~-rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A 167 (279)
.+-.+.+.|.+.++. .+.|.+. .|-...+.++...+-+||.+-..-+.+..++..+++|-.+.|...-+.|+...
T Consensus 340 ~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl 419 (493)
T KOG0804|consen 340 IMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKL 419 (493)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 334444445554444 4455555 66777888899999999999999999999999999999999999999999998
Q ss_pred hhhHHHHH
Q 023682 168 KYNESVVN 175 (279)
Q Consensus 168 ~~nea~a~ 175 (279)
++-+..-.
T Consensus 420 ~~~~e~~~ 427 (493)
T KOG0804|consen 420 KELEEREK 427 (493)
T ss_pred HHHHHHHH
Confidence 87665433
No 53
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=85.75 E-value=0.71 Score=34.43 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=32.0
Q ss_pred ccccccccccccceEEecCCCcccchhhHhc-----CCCCCCCcccccc
Q 023682 229 QMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 272 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 272 (279)
...|.++++--.+=|++||||. ++..|-.. -..||+|+.++..
T Consensus 4 ~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 4 EFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred ccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 4579999999999999999987 89998754 3679999988775
No 54
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=84.87 E-value=22 Score=34.96 Aligned_cols=39 Identities=26% Similarity=0.473 Sum_probs=30.0
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHhHH----------HHHHHHHHHHHHHH
Q 023682 79 LADNVRTELDRQKEEFDQYIKVQEE----------YLAKGVQDMKQRHM 117 (279)
Q Consensus 79 ~~~~l~~~l~~q~~EiD~~i~~q~e----------~lr~~l~e~r~rh~ 117 (279)
-|||+.++|.+.+..+-+-|-++.+ +|-+.|++-++||-
T Consensus 136 eGDDlt~~LEKEReqL~QQiEFe~~e~kK~E~~k~Kl~~qLeeEk~RHe 184 (561)
T KOG1103|consen 136 EGDDLTAHLEKEREQLQQQIEFEIEEKKKAEIAKDKLEMQLEEEKKRHE 184 (561)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788998888777766666665543 68888999999995
No 55
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=84.55 E-value=22 Score=34.62 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 141 NMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 141 ~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
.++--...++|...++.+--++.+..+.+.|..+..|..+|.++++
T Consensus 131 ~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~la 176 (401)
T PF06785_consen 131 HLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALA 176 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHH
Confidence 3333334444444455555555666677777777777777766654
No 56
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=84.55 E-value=1.5 Score=32.01 Aligned_cols=31 Identities=29% Similarity=0.282 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHYRA 167 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A 167 (279)
+|++-++.++++|++++.++..||...+..+
T Consensus 14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 14 EEVEVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5899999999999999999999998766544
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=84.46 E-value=48 Score=35.27 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=39.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 182 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lq 182 (279)
|.++.|.||.++++.+...||++..+..|.+..+..-++++.-+..|-+.|.
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 5678889999999999999999999999997777653455444555555554
No 58
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.66 E-value=37 Score=31.49 Aligned_cols=96 Identities=19% Similarity=0.315 Sum_probs=65.0
Q ss_pred HHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH----HH
Q 023682 85 TELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIE--KGLAKKLQEKDMEIENMNRKNRELIERIKQM----AA 158 (279)
Q Consensus 85 ~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave--~~~~~rLreKe~Eie~~~kk~~eLeErl~ql----~~ 158 (279)
..+.+-+.|++.+++.+.+.++..... +...+-.+=+ ...-..+.....+|+.+..++..|+.++..+ ..
T Consensus 180 ~~~~~~~~e~e~~y~~k~~~l~~~~~~----~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~ 255 (312)
T PF00038_consen 180 EIAQKNREELEEWYQSKLEELRQQSEK----SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDE 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhhhhhcccccccccccccc----cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHH
Confidence 334466678888888888888775532 2322222222 2233557888899999999999999999766 45
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 159 EAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 159 E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
+.+.|+.....-+.....++..+++.
T Consensus 256 ~~~~~~~~i~~le~el~~l~~~~~~~ 281 (312)
T PF00038_consen 256 EREEYQAEIAELEEELAELREEMARQ 281 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhccchhHHHHHHHHHHH
Confidence 56667777777777777777766444
No 59
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=82.83 E-value=0.46 Score=49.85 Aligned_cols=40 Identities=30% Similarity=0.686 Sum_probs=34.4
Q ss_pred cccccccccccceEEecCCCcccchhhHhcC------CCCCCCccccc
Q 023682 230 MICRACKAKEASVLLMPCRHLCLCKDCDVLV------AVCPVCQFVKN 271 (279)
Q Consensus 230 ~~C~iC~~~~~~v~llPC~HlclC~~C~~~l------~~CPvCr~~i~ 271 (279)
..|.+|.+ ..+.++.||+|. +|.+|-... ..||+|+..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 888999999999 999997652 57999997654
No 60
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=82.76 E-value=35 Score=30.46 Aligned_cols=93 Identities=15% Similarity=0.251 Sum_probs=56.9
Q ss_pred HHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH--------HHH
Q 023682 86 ELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIK--------QMA 157 (279)
Q Consensus 86 ~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~--------ql~ 157 (279)
.+.....++.++|.-|.+.+|.--+..|+- ..-+..+.++|++++.||.++.-.+..|+.-+. .+.
T Consensus 51 k~e~~e~~Lpqll~~h~eEvr~Lr~~LR~~------q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~ 124 (194)
T PF15619_consen 51 KYEDTEAELPQLLQRHNEEVRVLRERLRKS------QEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQ 124 (194)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 344455666666777777766533322221 234556668899999999988877776654322 344
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 158 AEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 158 ~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
..-..-.....+++..+..|..+++-.
T Consensus 125 ~kL~~~~~~l~~~~~ki~~Lek~leL~ 151 (194)
T PF15619_consen 125 RKLSQLEQKLQEKEKKIQELEKQLELE 151 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666777777777666544
No 61
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=82.69 E-value=0.53 Score=45.08 Aligned_cols=41 Identities=24% Similarity=0.820 Sum_probs=29.7
Q ss_pred ccccccccccccce--EEecCCCcccchhhHhc--CCCCCCCccccc
Q 023682 229 QMICRACKAKEASV--LLMPCRHLCLCKDCDVL--VAVCPVCQFVKN 271 (279)
Q Consensus 229 ~~~C~iC~~~~~~v--~llPC~HlclC~~C~~~--l~~CPvCr~~i~ 271 (279)
...|.-|.- +.-| -++||.|. ||-+|+.. .+.||.|--.|-
T Consensus 90 VHfCd~Cd~-PI~IYGRmIPCkHv-FCl~CAr~~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDF-PIAIYGRMIPCKHV-FCLECARSDSDKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCC-cceeeecccccchh-hhhhhhhcCccccCcCcccHHH
Confidence 346777854 3322 25899998 99999976 469999976654
No 62
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=82.66 E-value=44 Score=33.45 Aligned_cols=73 Identities=26% Similarity=0.318 Sum_probs=46.1
Q ss_pred HHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 86 ELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHM-----ASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA 160 (279)
Q Consensus 86 ~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~-----~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~ 160 (279)
++|+|..|-|+=+ ++++..|++.-+++. ...+.+.-+++-.+|.+||.||.++.+.|-.|.|+.-+..+++
T Consensus 3 ~~~s~~s~~dqr~----~~~~~~laq~~k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v~~~a~~ 78 (459)
T KOG0288|consen 3 PLYSQKSENDQRL----IDLNTELAQCEKAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLNEERVREEATE 78 (459)
T ss_pred hhhhhhhhhhhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777776532 233333433333332 3344555566677899999999999999998877665555554
Q ss_pred HH
Q 023682 161 QN 162 (279)
Q Consensus 161 qa 162 (279)
..
T Consensus 79 ~~ 80 (459)
T KOG0288|consen 79 KT 80 (459)
T ss_pred HH
Confidence 43
No 63
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.50 E-value=0.45 Score=48.01 Aligned_cols=46 Identities=24% Similarity=0.671 Sum_probs=33.3
Q ss_pred ccccccccccccc-----------------ccceEEecCCCcccchhhHhc-CC----CCCCCcccccc
Q 023682 226 RNHQMICRACKAK-----------------EASVLLMPCRHLCLCKDCDVL-VA----VCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~-----------------~~~v~llPC~HlclC~~C~~~-l~----~CPvCr~~i~~ 272 (279)
++....|+||+.. .++..|-||.|. +=..|-.. |. .||+||.++..
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4566789999972 224566799998 77778654 43 89999998753
No 64
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=82.28 E-value=18 Score=27.27 Aligned_cols=57 Identities=25% Similarity=0.326 Sum_probs=34.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 128 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 128 ~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
+.++|++||+.|+.+....-.|...--+...-....+....+++..+..|+..++.+
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~ 59 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEEL 59 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888877777655555555444444445555555556666666666555544
No 65
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.44 E-value=0.13 Score=49.73 Aligned_cols=47 Identities=26% Similarity=0.509 Sum_probs=36.9
Q ss_pred ccccccccccccccc-ceEEecCCCcccchhhHhcC-----CCCCCCcccccce
Q 023682 226 RNHQMICRACKAKEA-SVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNAS 273 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~-~v~llPC~HlclC~~C~~~l-----~~CPvCr~~i~~~ 273 (279)
+.....|.||++--. .+...-|.|. ||..|.+.. ..||.||+...+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhcccc
Confidence 345678999998443 5667789999 999999872 8999999876543
No 66
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=80.56 E-value=0.44 Score=44.18 Aligned_cols=40 Identities=33% Similarity=0.836 Sum_probs=29.6
Q ss_pred cccccccccc-----cccceEEec-CCCcccchhhHhcC-----CCCC--CCcc
Q 023682 228 HQMICRACKA-----KEASVLLMP-CRHLCLCKDCDVLV-----AVCP--VCQF 268 (279)
Q Consensus 228 ~~~~C~iC~~-----~~~~v~llP-C~HlclC~~C~~~l-----~~CP--vCr~ 268 (279)
....|++|.. ...-+++-| |-|. +|..|..++ ..|| .|..
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHH
Confidence 3457999976 233455568 9999 999999884 6899 7754
No 67
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=80.54 E-value=17 Score=30.49 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=38.0
Q ss_pred CchhhhhhhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHH
Q 023682 73 PPIILSLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGL----AKKLQEKDMEIENMNRKNRE 148 (279)
Q Consensus 73 ~~~~~~~~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~----~~rLreKe~Eie~~~kk~~e 148 (279)
|..++.|=|++-. .++...++|+. .+++.++..+.+.+. + |.+.+..+ ..+--..+..|..+.++++|
T Consensus 66 P~tvLALLDElE~-~~~~i~~~~~~--~e~~~~a~~~~~l~~-~----Le~ae~~~~~~~~~~~~~~e~~~~~~~~riaE 137 (139)
T PF13935_consen 66 PATVLALLDELER-AQQRIAELEQE--CENEDIALDVQKLRV-E----LEAAEKRIAAELAEQAEAYEGEIADYAKRIAE 137 (139)
T ss_pred chHHHHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHH-H----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence 4445555454433 34555666666 555666555554444 2 33333333 33344566777777778777
Q ss_pred HH
Q 023682 149 LI 150 (279)
Q Consensus 149 Le 150 (279)
||
T Consensus 138 le 139 (139)
T PF13935_consen 138 LE 139 (139)
T ss_pred cC
Confidence 75
No 68
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=78.15 E-value=1.3 Score=41.42 Aligned_cols=48 Identities=21% Similarity=0.400 Sum_probs=25.2
Q ss_pred ccccccccccccceEEecC-----CCcccchhhHhc----CCCCCCCcccccceEEEe
Q 023682 229 QMICRACKAKEASVLLMPC-----RHLCLCKDCDVL----VAVCPVCQFVKNASVLVH 277 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~llPC-----~HlclC~~C~~~----l~~CPvCr~~i~~~v~v~ 277 (279)
...|+||++.+.-.+|.+= ||+ .|..|... --.||.|.......++.|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L-~Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYL-HCSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEE-EETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEE-EcCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 4589999999987777664 455 79999865 269999999888877765
No 69
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=78.07 E-value=0.9 Score=38.47 Aligned_cols=45 Identities=33% Similarity=0.764 Sum_probs=33.2
Q ss_pred ccccccccccccce-EEec---CCCcccchhhHhcC-------CCCCCCcccccceE
Q 023682 229 QMICRACKAKEASV-LLMP---CRHLCLCKDCDVLV-------AVCPVCQFVKNASV 274 (279)
Q Consensus 229 ~~~C~iC~~~~~~v-~llP---C~HlclC~~C~~~l-------~~CPvCr~~i~~~v 274 (279)
.-.|-||.+...+- .|.| || +-+|..|...+ ..||+|.+.+.++-
T Consensus 80 lYeCnIC~etS~ee~FLKPneCCg-Y~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKPNECCG-YSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCcccccc-hHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 34688888876653 3444 66 55999998774 89999999887653
No 70
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=77.83 E-value=43 Score=35.74 Aligned_cols=58 Identities=22% Similarity=0.326 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 124 IEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 124 ve~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
....+.++||+|+.|-+++.+|+- +.|..|.-|-+....+-...+++-..++.++...
T Consensus 471 ~qs~iIkKLRAk~ke~etl~~K~g---e~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~ 528 (961)
T KOG4673|consen 471 AQSAIIKKLRAKIKEAETLEEKKG---ELITKLQSEENKLKSILRDKEETEKLLQETIEKH 528 (961)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhh---hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 356778999999999998887776 4556666666666666666666555555444433
No 71
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=77.39 E-value=14 Score=30.42 Aligned_cols=32 Identities=28% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
+|++-++.++.||++++.+|..|+.-.+..+-
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~s 98 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLAS 98 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 58899999999999999999999988776654
No 72
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=77.11 E-value=15 Score=32.29 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHHhhHHHHHHHHHHHhHH
Q 023682 82 NVRTELDRQKEEFDQYIKVQEE 103 (279)
Q Consensus 82 ~l~~~l~~q~~EiD~~i~~q~e 103 (279)
++...+.+.+.|+..+.+..++
T Consensus 71 ~le~~~~~l~~ELael~r~~~e 92 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGE 92 (194)
T ss_dssp ----------------------
T ss_pred cccccccccccccccccccccc
Confidence 3445556666677666666554
No 73
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=76.28 E-value=1.2e+02 Score=33.27 Aligned_cols=48 Identities=13% Similarity=0.275 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
.-|..+.++|.+|.+.+..+.-+..-|-.+..+...+..+|+.+|.-+
T Consensus 459 ~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l 506 (980)
T KOG0980|consen 459 QSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALL 506 (980)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445678999999999999999999999999999988888888776544
No 74
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=75.64 E-value=1 Score=43.25 Aligned_cols=49 Identities=8% Similarity=0.040 Sum_probs=39.8
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc-----CCCCCCCcccccceEEE
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNASVLV 276 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~~v~v 276 (279)
....|.+|+.+..-+.+.||+|-++|..|... ...||+|...+.....|
T Consensus 135 ~ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~~i 188 (394)
T KOG2113|consen 135 ATIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAGQI 188 (394)
T ss_pred CccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhhcc
Confidence 44579999999999999999999999887544 47899998877655443
No 75
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=75.32 E-value=14 Score=30.01 Aligned_cols=45 Identities=33% Similarity=0.489 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 116 HMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA 160 (279)
Q Consensus 116 h~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~ 160 (279)
|+...+...-...-.++++...+++++++++.++.+.++.+..|+
T Consensus 73 ~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 73 HCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344444455567888889999999999999999999998875
No 76
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=75.09 E-value=31 Score=32.75 Aligned_cols=36 Identities=22% Similarity=0.426 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023682 114 QRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 114 ~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl 153 (279)
-||+++-|.--+ .||.+.|.||+.++.++.-+.|+|
T Consensus 70 iRHLkakLkes~----~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 70 IRHLKAKLKESE----NRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHH
Confidence 457777666555 789999999999999999998888
No 77
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.05 E-value=11 Score=28.72 Aligned_cols=32 Identities=22% Similarity=0.437 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 138 EIENMNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 138 Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
|...+....-.|+....|+..|...||.+-++
T Consensus 40 e~q~~q~~reaL~~eneqlk~e~~~WQerlrs 71 (79)
T COG3074 40 EVQNAQHQREALERENEQLKEEQNGWQERLRA 71 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777888888999999999987654
No 78
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=74.83 E-value=2.5 Score=41.23 Aligned_cols=11 Identities=27% Similarity=0.658 Sum_probs=9.2
Q ss_pred CCCCCCccccc
Q 023682 261 AVCPVCQFVKN 271 (279)
Q Consensus 261 ~~CPvCr~~i~ 271 (279)
..||.||+.+-
T Consensus 341 ~~CPtCRa~FC 351 (358)
T PF10272_consen 341 CPCPTCRAKFC 351 (358)
T ss_pred CCCCCCcccce
Confidence 68999999764
No 79
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=74.73 E-value=61 Score=31.08 Aligned_cols=75 Identities=15% Similarity=0.202 Sum_probs=48.8
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 81 DNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA 160 (279)
Q Consensus 81 ~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~ 160 (279)
....++|.+.+.|+.-+|+.+..+|-.-+ +.+=+.||.+|+...- .+-+.|..++.-|+.-|+++.+=.
T Consensus 23 ~sav~qL~~~r~~teelIr~rVrq~V~hV----qaqEreLLe~v~~rYq-------R~y~ema~~L~~LeavLqRir~G~ 91 (324)
T PF12126_consen 23 RSAVSQLGRARADTEELIRARVRQVVAHV----QAQERELLEAVEARYQ-------RDYEEMAGQLGRLEAVLQRIRTGG 91 (324)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHHHHHHHHhHH
Confidence 35678899999999999999988886644 5677888888884432 233344455555555555555444
Q ss_pred HHHHHH
Q 023682 161 QNWHYR 166 (279)
Q Consensus 161 qaWq~~ 166 (279)
.--++.
T Consensus 92 ~LVekM 97 (324)
T PF12126_consen 92 ALVEKM 97 (324)
T ss_pred HHHHHH
Confidence 433333
No 80
>PRK10884 SH3 domain-containing protein; Provisional
Probab=74.60 E-value=65 Score=29.01 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=17.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
.++.+.+.++.++..+|.+|.+.+..+..|.+
T Consensus 125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~ 156 (206)
T PRK10884 125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVD 156 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666655555554444
No 81
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=74.22 E-value=35 Score=25.73 Aligned_cols=24 Identities=33% Similarity=0.531 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 144 RKNRELIERIKQMAAEAQNWHYRA 167 (279)
Q Consensus 144 kk~~eLeErl~ql~~E~qaWq~~A 167 (279)
..+.+|++...++..|..+|+.+-
T Consensus 39 ~e~~~L~~en~~L~~e~~~~~~rl 62 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAWQERL 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666553
No 82
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=73.74 E-value=76 Score=29.53 Aligned_cols=60 Identities=20% Similarity=0.344 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 91 KEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 91 ~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
..|||+-|.. .+..+..+....++.....++.+.+.++..+..++.+++..+.++..+.+
T Consensus 107 ~~eI~~~l~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 166 (301)
T PF14362_consen 107 EKEIDQKLDE-----------IRQEKQDAIQAQVQASFDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQ 166 (301)
T ss_pred HHHHHHHHHH-----------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677754443 34445555555555566666777777777777777777777766655433
No 83
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=73.18 E-value=1.1e+02 Score=32.84 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=29.7
Q ss_pred HHHHhhHHHHHHHHHHHhHH-------------HHHHHHHHHHHHHHHHHHHH
Q 023682 84 RTELDRQKEEFDQYIKVQEE-------------YLAKGVQDMKQRHMASFLSA 123 (279)
Q Consensus 84 ~~~l~~q~~EiD~~i~~q~e-------------~lr~~l~e~r~rh~~~ll~a 123 (279)
...+.+...|.|++...+.+ +||..|.|.+-|-.|-|-..
T Consensus 47 ~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dy 99 (717)
T PF09730_consen 47 RQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDY 99 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 45566778889998887755 68888888888877766543
No 84
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=73.06 E-value=36 Score=26.17 Aligned_cols=42 Identities=21% Similarity=0.232 Sum_probs=33.4
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 128 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 128 ~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
.-.+|..|++||++++.....|...+.....-+...+.....
T Consensus 10 L~~kL~~K~eEI~rLn~lv~sLR~KLiKYt~LnkkLq~~~~~ 51 (76)
T PF11544_consen 10 LKKKLNDKQEEIDRLNILVGSLRGKLIKYTELNKKLQDQLLN 51 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999888877777665554443
No 85
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=72.99 E-value=43 Score=26.17 Aligned_cols=65 Identities=15% Similarity=0.293 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023682 121 LSAIEKGLAKKL------QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 185 (279)
Q Consensus 121 l~ave~~~~~rL------reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~ 185 (279)
|..+|..+-+|+ .+.++||..+...-..|.+.+-+..+.+..|.....+-....++.-.++.-++
T Consensus 17 id~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL 87 (89)
T PF13747_consen 17 IDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVL 87 (89)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344454444443 46678889999999999999999999999999888776666555555554443
No 86
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=72.95 E-value=14 Score=29.78 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=31.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYR 166 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~ 166 (279)
.++++...+++.++.++.+|+++...|..|...|+.-
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 3678888899999999999999999999999988863
No 87
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=72.67 E-value=42 Score=28.08 Aligned_cols=32 Identities=16% Similarity=0.277 Sum_probs=12.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 133 QEKDMEIENMNRKNRELIERIKQMAAEAQNWH 164 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq 164 (279)
+.++.+++++...+..|++++..+..|...++
T Consensus 62 ~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 62 RRLRSDIERLQNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444443333333
No 88
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=72.25 E-value=1.9 Score=41.57 Aligned_cols=51 Identities=22% Similarity=0.499 Sum_probs=31.8
Q ss_pred cccccccccc-------------------cccceEEecCCCcccchhhH-hc-----------CCCCCCCcccccc---e
Q 023682 228 HQMICRACKA-------------------KEASVLLMPCRHLCLCKDCD-VL-----------VAVCPVCQFVKNA---S 273 (279)
Q Consensus 228 ~~~~C~iC~~-------------------~~~~v~llPC~HlclC~~C~-~~-----------l~~CPvCr~~i~~---~ 273 (279)
..+.|.+|+. .+.+..|-||||+|.=+.=. +. -..||.|-....+ .
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge~~~ 419 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGEQGY 419 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccCCce
Confidence 4678888886 45566788999985322111 11 1689999877653 4
Q ss_pred EEEee
Q 023682 274 VLVHL 278 (279)
Q Consensus 274 v~v~~ 278 (279)
|+++|
T Consensus 420 ikliF 424 (429)
T KOG3842|consen 420 IKLIF 424 (429)
T ss_pred EEEEE
Confidence 55443
No 89
>PRK10884 SH3 domain-containing protein; Provisional
Probab=72.13 E-value=69 Score=28.86 Aligned_cols=50 Identities=6% Similarity=0.021 Sum_probs=31.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKS 179 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~ 179 (279)
.+..+...+++.......+|++..++|..|...-+.....-++..+.++.
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~ 167 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR 167 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777777777777777777777655555544444444443
No 90
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=71.72 E-value=3.1 Score=28.86 Aligned_cols=36 Identities=33% Similarity=0.887 Sum_probs=23.7
Q ss_pred ccccccc--cccceEEecCC-----CcccchhhHhc------CCCCCCCc
Q 023682 231 ICRACKA--KEASVLLMPCR-----HLCLCKDCDVL------VAVCPVCQ 267 (279)
Q Consensus 231 ~C~iC~~--~~~~v~llPC~-----HlclC~~C~~~------l~~CPvCr 267 (279)
.|.||++ .+.+.++.||. |+ +=..|-.. ...||+|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence 4899996 66678889995 32 22345432 35899985
No 91
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=70.56 E-value=44 Score=29.44 Aligned_cols=79 Identities=20% Similarity=0.302 Sum_probs=39.1
Q ss_pred HHHHHHhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 95 DQYIKVQEEYLAKGV-------QDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRA 167 (279)
Q Consensus 95 D~~i~~q~e~lr~~l-------~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A 167 (279)
.+|+..=++|||..+ ..+.++++...+.-+...|-.-.++.+.||.++.++...||+ +......|+.+|
T Consensus 78 ~Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~----~~~~~k~LrnKa 153 (171)
T PF04799_consen 78 RQFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEE----IQSKSKTLRNKA 153 (171)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 456666777777655 457788888888888888888899999999999999976664 334444555444
Q ss_pred hhhHHHHHHHHHHHHHH
Q 023682 168 KYNESVVNLLKSNLQQA 184 (279)
Q Consensus 168 ~~nea~a~~Lr~~Lqq~ 184 (279)
+.|.++|+.-
T Consensus 154 -------~~L~~eL~~F 163 (171)
T PF04799_consen 154 -------NWLESELERF 163 (171)
T ss_dssp -------HHHHHHHHHH
T ss_pred -------HHHHHHHHHH
Confidence 4466666543
No 92
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=70.19 E-value=2.4 Score=32.77 Aligned_cols=30 Identities=20% Similarity=0.579 Sum_probs=21.4
Q ss_pred cccccccccccc--cceEEecCCCcccchhhHh
Q 023682 228 HQMICRACKAKE--ASVLLMPCRHLCLCKDCDV 258 (279)
Q Consensus 228 ~~~~C~iC~~~~--~~v~llPC~HlclC~~C~~ 258 (279)
....|.+|...- ..+++.||||. +-..|..
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence 345699998743 56788899987 5666653
No 93
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=70.15 E-value=22 Score=33.83 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
-|++-+.++|-+|++++..+..|-+-.+....
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~ 286 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777788888888888877777776555443
No 94
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=69.72 E-value=1.6e+02 Score=31.46 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=27.4
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 023682 133 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 183 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq 183 (279)
.+-.+++..++.+.-+|++++..+....---...-......++.|+.+|-+
T Consensus 158 ~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk 208 (739)
T PF07111_consen 158 QAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSK 208 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777788888888877766543211111112222334556665543
No 95
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=69.68 E-value=57 Score=26.44 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=27.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
..|.+--++|+.++....+|.|-...|..|++..+.+...
T Consensus 15 ~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~ 54 (107)
T PF06156_consen 15 QQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEE 54 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555667777888888888888888888776665544
No 96
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=68.78 E-value=65 Score=34.72 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=22.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAA 158 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~ 158 (279)
||++|+||.+++-.+.-|+..+.++-.
T Consensus 531 lrQrDaEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 531 LRQRDAEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 788888888888888888888887765
No 97
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=68.68 E-value=48 Score=25.66 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 138 EIENMNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 138 Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
|++.+.--..+|+....++..|...|+.+-+.
T Consensus 40 e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~ 71 (79)
T PRK15422 40 EVQNAQHQREELERENNHLKEQQNGWQERLQA 71 (79)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555667888899999999999987543
No 98
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=68.62 E-value=2 Score=30.16 Aligned_cols=25 Identities=24% Similarity=0.603 Sum_probs=12.2
Q ss_pred ecCCCcccchhhHhcC-----CCCCCCcccc
Q 023682 245 MPCRHLCLCKDCDVLV-----AVCPVCQFVK 270 (279)
Q Consensus 245 lPC~HlclC~~C~~~l-----~~CPvCr~~i 270 (279)
-||++. +|.+|...+ ..||.||.+.
T Consensus 18 C~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 18 CECGFQ-ICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp STTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence 345666 899996553 6899999864
No 99
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=67.36 E-value=1.1e+02 Score=34.70 Aligned_cols=54 Identities=24% Similarity=0.327 Sum_probs=33.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023682 128 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 185 (279)
Q Consensus 128 ~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~ 185 (279)
+..++.+.++++.++.+++.++++.++-+...++. +......++.++.+|+...
T Consensus 499 ~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~----~~~~~~kv~~~rk~le~~~ 552 (1317)
T KOG0612|consen 499 VEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDN----AADSLEKVNSLRKQLEEAE 552 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHhh
Confidence 34466667777777777777777666666444433 3344556777777776543
No 100
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=67.31 E-value=1.6 Score=44.74 Aligned_cols=42 Identities=24% Similarity=0.621 Sum_probs=35.6
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc---------CCCCCCCcccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL---------VAVCPVCQFVK 270 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~---------l~~CPvCr~~i 270 (279)
+...|.+|.+...+.+.-.|.|. +|..|... --+||+|..+.
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L 585 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL 585 (791)
T ss_pred CceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence 45689999999999999999998 99999743 26999998654
No 101
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=66.74 E-value=2.7 Score=41.25 Aligned_cols=49 Identities=20% Similarity=0.529 Sum_probs=38.7
Q ss_pred cccccccccccccccceEE-ecCCCcccchhhHhcC----CCCCCCcccccceEE
Q 023682 226 RNHQMICRACKAKEASVLL-MPCRHLCLCKDCDVLV----AVCPVCQFVKNASVL 275 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~l-lPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~ 275 (279)
++....|.+|..--.+-+. ..|||. +|..|.... ..||.|+..+...-.
T Consensus 18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~ 71 (391)
T KOG0297|consen 18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE 71 (391)
T ss_pred CcccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence 4456789999998877777 599999 999998762 689999887765443
No 102
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.78 E-value=1.1e+02 Score=28.24 Aligned_cols=90 Identities=18% Similarity=0.241 Sum_probs=55.0
Q ss_pred chhhhhhhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023682 74 PIILSLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 74 ~~~~~~~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl 153 (279)
+...+++|-..+.+..+..-||+|++.--.++-..+.+--++-++. .-.+..+..-|++.+.|+.+-+...-+-+++.
T Consensus 11 et~l~l~d~~~~~i~n~~s~~D~f~q~~r~~~~nS~~efar~lS~~--~~e~e~l~~~l~etene~~~~neL~~ek~~~q 88 (246)
T KOG4657|consen 11 ETMLSLGDICEKDIHNQRSKIDSFIQSPRRRSMNSLVEFARALSQS--QVELENLKADLRETENELVKVNELKTEKEARQ 88 (246)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888999999999999999877555544444332221111 11222333446777777777766555555555
Q ss_pred HHHHHHHHHHHH
Q 023682 154 KQMAAEAQNWHY 165 (279)
Q Consensus 154 ~ql~~E~qaWq~ 165 (279)
-.+.+|..+.|.
T Consensus 89 ~~ieqeik~~q~ 100 (246)
T KOG4657|consen 89 MGIEQEIKATQS 100 (246)
T ss_pred HHHHHHHHHHHH
Confidence 555666555554
No 103
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=65.34 E-value=94 Score=30.79 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=29.6
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 023682 126 KGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA-QNWH 164 (279)
Q Consensus 126 ~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~-qaWq 164 (279)
..+..++...+.++..+.+++.+|++++..+.... ..|.
T Consensus 95 ~~~~~~l~~~e~~~~~l~~q~~~Lq~~~~~ls~~~~~dWl 134 (390)
T PRK10920 95 KQQAKALDQANRQQAALAKQLDELQQKVATISGSDAKTWL 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHH
Confidence 34455677778888889999999999988877544 6675
No 104
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=64.70 E-value=1.1e+02 Score=27.57 Aligned_cols=79 Identities=10% Similarity=0.211 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 023682 104 YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 183 (279)
Q Consensus 104 ~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq 183 (279)
.+|+.--|..+.+...++..-| .|+.....+|+.+..+-.+--.+-+++..|.++....-....+-.+.|..++.+
T Consensus 104 eirR~~LeAQka~~eR~ia~~~----~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~ 179 (192)
T PF11180_consen 104 EIRRAQLEAQKAQLERLIAESE----ARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQ 179 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555666666666665555 344555557777776666666666777777776665555555555566666555
Q ss_pred HHh
Q 023682 184 AIS 186 (279)
Q Consensus 184 ~~~ 186 (279)
+-.
T Consensus 180 Lq~ 182 (192)
T PF11180_consen 180 LQR 182 (192)
T ss_pred HHH
Confidence 543
No 105
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=64.27 E-value=49 Score=30.83 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=16.2
Q ss_pred hhHHHHHHhhHHHHHHHHHH
Q 023682 80 ADNVRTELDRQKEEFDQYIK 99 (279)
Q Consensus 80 ~~~l~~~l~~q~~EiD~~i~ 99 (279)
||.+..+|++...++|.+++
T Consensus 159 Gd~l~~eLqkr~~~v~~l~~ 178 (289)
T COG4985 159 GDPLERELQKRLLEVETLRD 178 (289)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 68889999988888887654
No 106
>PRK04863 mukB cell division protein MukB; Provisional
Probab=63.76 E-value=2.8e+02 Score=32.35 Aligned_cols=27 Identities=15% Similarity=0.188 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNW 163 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaW 163 (279)
++++.+..+..++++.+..+..+...|
T Consensus 369 eeLeeleeeleeleeEleelEeeLeeL 395 (1486)
T PRK04863 369 EVVEEADEQQEENEARAEAAEEEVDEL 395 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444444
No 107
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=63.53 E-value=40 Score=26.62 Aligned_cols=38 Identities=13% Similarity=0.341 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 122 SAIEKGLAKKLQE---KDMEIENMNRKNRELIERIKQMAAE 159 (279)
Q Consensus 122 ~ave~~~~~rLre---Ke~Eie~~~kk~~eLeErl~ql~~E 159 (279)
..+|..+.+|+-. -++||++++.-.+.|++++.+++..
T Consensus 27 qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~ 67 (88)
T PF05121_consen 27 QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCER 67 (88)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466666777633 4699999999999999999988854
No 108
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=63.00 E-value=6.1 Score=30.95 Aligned_cols=30 Identities=20% Similarity=0.495 Sum_probs=22.3
Q ss_pred ceEEecCCCcccchhhHhc-------CCCCCCCccccc
Q 023682 241 SVLLMPCRHLCLCKDCDVL-------VAVCPVCQFVKN 271 (279)
Q Consensus 241 ~v~llPC~HlclC~~C~~~-------l~~CPvCr~~i~ 271 (279)
.+++--|+|. +=..|... -..||+||++..
T Consensus 46 plv~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 46 PLVWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred ceeeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence 3466779997 77888543 379999998764
No 109
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=62.30 E-value=1.1e+02 Score=27.09 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=19.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
++++|.+|..+.+++.+|++....+..+..+
T Consensus 126 ~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~ 156 (190)
T PF05266_consen 126 LKELESEIKELEMKILELQRQAAKLKEKKEA 156 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777777766555544443
No 110
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=62.10 E-value=76 Score=33.29 Aligned_cols=16 Identities=19% Similarity=0.196 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHHH
Q 023682 170 NESVVNLLKSNLQQAI 185 (279)
Q Consensus 170 nea~a~~Lr~~Lqq~~ 185 (279)
...++..|...|.++.
T Consensus 493 ~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 493 KKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444444443
No 111
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=60.93 E-value=1.4e+02 Score=27.63 Aligned_cols=86 Identities=14% Similarity=0.351 Sum_probs=43.6
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023682 77 LSLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQM 156 (279)
Q Consensus 77 ~~~~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql 156 (279)
..|.|-|++.|.+= +|+..++..|...|...+.+.... +..+....-.-|++.-..|+.+.+.++.|+-.+..+
T Consensus 7 ~~LNdRla~YIekV-----r~LE~~N~~Le~~i~~~~~~~~~~-~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l 80 (312)
T PF00038_consen 7 QSLNDRLASYIEKV-----RFLEQENKRLESEIEELREKKGEE-VSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNL 80 (312)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHhhhhHHHHHHHHhccccc-CcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhH
Confidence 45677777777653 355556666666665544443111 122333333444555556666666666666666666
Q ss_pred HHHHHHHHHHHh
Q 023682 157 AAEAQNWHYRAK 168 (279)
Q Consensus 157 ~~E~qaWq~~A~ 168 (279)
..|...++....
T Consensus 81 ~~e~~~~r~k~e 92 (312)
T PF00038_consen 81 KEELEDLRRKYE 92 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666554443
No 112
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=60.71 E-value=89 Score=31.96 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHhcC
Q 023682 138 EIENMNRKNRELIERIKQMAAEAQNWH--YRAKYNESVVNLLKSNLQQAISQG 188 (279)
Q Consensus 138 Eie~~~kk~~eLeErl~ql~~E~qaWq--~~A~~nea~a~~Lr~~Lqq~~~~~ 188 (279)
-|+++++|+++|..|+-++..--...+ ..+..-+. +.|+.+|+-++.+.
T Consensus 377 KI~~~k~r~~~Ls~RiLRv~ikqeilr~~G~~L~~~E--E~Lr~Kldtll~~l 427 (508)
T KOG3091|consen 377 KIEEAKNRHVELSHRILRVMIKQEILRKRGYALTPDE--EELRAKLDTLLAQL 427 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcCCccH--HHHHHHHHHHHHHh
Confidence 456788888888888887754333333 33332222 23677777666553
No 113
>COG3120 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.41 E-value=30 Score=29.20 Aligned_cols=56 Identities=16% Similarity=0.260 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 023682 104 YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 183 (279)
Q Consensus 104 ~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq 183 (279)
+|..++.-.|+||+. .|-...+|+--+ -|...|++++.....+-.+|..++.+
T Consensus 69 klkQaIRArRKRhFN------------------aE~qhTrKKSID---------Ley~VW~rLs~~a~~~g~TLSetI~~ 121 (149)
T COG3120 69 KLKQAIRARRKRHFN------------------AEHQHTRKKSID---------LEYAVWQRLSGLARRRGKTLSETIVY 121 (149)
T ss_pred HHHHHHHHHHHhhcc------------------Hhhhhhhhcccc---------HHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 677777777777762 222334444433 45566888888877777777777766
Q ss_pred HHh
Q 023682 184 AIS 186 (279)
Q Consensus 184 ~~~ 186 (279)
++.
T Consensus 122 li~ 124 (149)
T COG3120 122 LIE 124 (149)
T ss_pred HHH
Confidence 654
No 114
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=60.07 E-value=98 Score=25.59 Aligned_cols=95 Identities=14% Similarity=0.226 Sum_probs=57.5
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 78 SLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 78 ~~~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
.+-..+.++|.+-..|+..+ +.+..+|-. .|..-...|+...+ ..+++....+++.+|+..++.+.
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l-~~el~~l~~----~r~~l~~Eiv~l~~---------~~e~~~~~~~~~~~L~~el~~l~ 81 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASL-QEELARLEA----ERDELREEIVKLME---------ENEELRALKKEVEELEQELEELQ 81 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHH----HHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888888753 556555543 33333444444333 23344444555555555555555
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 158 AEAQNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 158 ~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
...++--..--+....+.-|++.++.+..
T Consensus 82 ~ry~t~LellGEK~E~veEL~~Dv~DlK~ 110 (120)
T PF12325_consen 82 QRYQTLLELLGEKSEEVEELRADVQDLKE 110 (120)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 55566566666777778888888877653
No 115
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=60.03 E-value=94 Score=25.37 Aligned_cols=64 Identities=17% Similarity=0.364 Sum_probs=38.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHH
Q 023682 94 FDQYIKVQEEYLAKGVQDMKQ---RHMASFLSAIEKGLAKKLQEKD----MEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 94 iD~~i~~q~e~lr~~l~e~r~---rh~~~ll~ave~~~~~rLreKe----~Eie~~~kk~~eLeErl~ql~ 157 (279)
+|.++.-=.+.++..+.+.+. .+...+=.+++..+.+-|.... +||+.+..++.+|+.++..+.
T Consensus 46 ~~e~~~~~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 46 FDESVDAAREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 344433333444444444333 3334445556666665565544 789999999999998888775
No 116
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.87 E-value=62 Score=31.31 Aligned_cols=55 Identities=16% Similarity=0.366 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 105 LAKGVQDMKQRHMASFLSAIE---KGLAKKLQEKDMEIENMNRKNRELIERIKQMAAE 159 (279)
Q Consensus 105 lr~~l~e~r~rh~~~ll~ave---~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E 159 (279)
+....+.+|+-|...+-+.-| +...+|+++||.|+-.++|.+.+-.++++++..|
T Consensus 320 ~qet~eaKr~e~~~e~qrkEee~rqmFvqrvkekE~elke~Ekel~~kf~~lkr~h~e 377 (406)
T KOG3859|consen 320 LQETYEAKRNEFLGELQRKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKRLHQE 377 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888877766644 4567889999999999988887777777666544
No 117
>smart00338 BRLZ basic region leucin zipper.
Probab=59.21 E-value=64 Score=23.13 Aligned_cols=33 Identities=18% Similarity=0.416 Sum_probs=20.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWH 164 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq 164 (279)
+.+.+.++..+...|.+|...+.++..|...+.
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666666666666666665543
No 118
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=58.26 E-value=39 Score=28.47 Aligned_cols=28 Identities=32% Similarity=0.415 Sum_probs=22.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
.-++.||.||..+++++.++.-..+.|.
T Consensus 101 ~e~~~Kdsei~~Lr~~L~~~~~~n~~Le 128 (131)
T PF04859_consen 101 AELRAKDSEIDRLREKLDELNRANKSLE 128 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4478999999999999988887766654
No 119
>PRK11637 AmiB activator; Provisional
Probab=58.15 E-value=1.9e+02 Score=28.35 Aligned_cols=16 Identities=13% Similarity=0.329 Sum_probs=7.1
Q ss_pred hHHHHHHhhHHHHHHH
Q 023682 81 DNVRTELDRQKEEFDQ 96 (279)
Q Consensus 81 ~~l~~~l~~q~~EiD~ 96 (279)
+++..++++...+|..
T Consensus 43 ~~~~~~l~~l~~qi~~ 58 (428)
T PRK11637 43 SDNRDQLKSIQQDIAA 58 (428)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 3444444444444443
No 120
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=57.28 E-value=1.9e+02 Score=27.93 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHHH
Q 023682 146 NRELIERIKQMAAEAQNW-HYRAKYNESVVNLLKSNLQQAI 185 (279)
Q Consensus 146 ~~eLeErl~ql~~E~qaW-q~~A~~nea~a~~Lr~~Lqq~~ 185 (279)
...|.-++.+|..|--.. ..+..+.+..++.|...|+.+-
T Consensus 108 tn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le 148 (310)
T PF09755_consen 108 TNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLE 148 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345666777777775544 3456678888999999888774
No 121
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=56.79 E-value=41 Score=27.03 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=24.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
.+.+.+.|++++..+|.+|++.+..+...-..-...|++
T Consensus 35 q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~ 73 (105)
T PRK00888 35 QVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARN 73 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHH
Confidence 345566677777777777777777776533443444443
No 122
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=56.70 E-value=41 Score=27.47 Aligned_cols=42 Identities=19% Similarity=0.458 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHH
Q 023682 110 QDMKQRHMASFLSAIEKGLAKK--LQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 110 ~e~r~rh~~~ll~ave~~~~~r--LreKe~Eie~~~kk~~eLeErl 153 (279)
.++-+|.++-++.-.+ ++++ +-+..++|+.++++.+.|+..+
T Consensus 63 e~K~~r~i~~ml~~~~--~~r~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 63 EEKIPRKIEEMLSDLE--VARQSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHhhhHHHHHHHhhcc--ccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555555444 2221 3344456666666666665544
No 123
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=56.63 E-value=3.9 Score=26.33 Aligned_cols=16 Identities=25% Similarity=0.445 Sum_probs=12.8
Q ss_pred CCCCCCCcccccceEE
Q 023682 260 VAVCPVCQFVKNASVL 275 (279)
Q Consensus 260 l~~CPvCr~~i~~~v~ 275 (279)
...||+|..+...+.+
T Consensus 18 p~~CP~Cg~~~~~F~~ 33 (34)
T cd00729 18 PEKCPICGAPKEKFEE 33 (34)
T ss_pred CCcCcCCCCchHHcEE
Confidence 3699999998877654
No 124
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=55.37 E-value=4.3 Score=39.55 Aligned_cols=41 Identities=22% Similarity=0.629 Sum_probs=30.1
Q ss_pred cccccccc----ccceEEecCCCcccchhhHhcC-----CCCCCCcccccc
Q 023682 231 ICRACKAK----EASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNA 272 (279)
Q Consensus 231 ~C~iC~~~----~~~v~llPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 272 (279)
.|..|.+. ..+..=.|||-. +|..|...+ ..||.||...+.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d 65 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD 65 (480)
T ss_pred cCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence 49999873 345555667766 899998764 799999986543
No 125
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=55.13 E-value=31 Score=31.05 Aligned_cols=49 Identities=22% Similarity=0.314 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 135 KDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 135 Ke~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
-|=|+.+++|++++|++.+..+..+...- ..........++.++++++.
T Consensus 94 ~dwEevrLkrELa~Le~~l~~~~~~~~~~---~~~~~~~~~lvk~e~EqLL~ 142 (195)
T PF12761_consen 94 TDWEEVRLKRELAELEEKLSKVEQAAESR---RSDTDSKPALVKREFEQLLD 142 (195)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhc---ccCCcchHHHHHHHHHHHHH
Confidence 34566778888888888887777665542 11222223345677777765
No 126
>PRK11637 AmiB activator; Provisional
Probab=55.02 E-value=2.2e+02 Score=27.99 Aligned_cols=26 Identities=23% Similarity=0.417 Sum_probs=10.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
+.+.+.+|..+.+++.++++.+.++.
T Consensus 91 i~~~~~~i~~~~~ei~~l~~eI~~~q 116 (428)
T PRK11637 91 LRETQNTLNQLNKQIDELNASIAKLE 116 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444443333333333333
No 127
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=54.76 E-value=54 Score=35.58 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 88 DRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 88 ~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
..|..|.+.|++.+.|.|++++.+....--+..+..+=...-.+|+.--.-|..++.-+-.+++.+.++-
T Consensus 956 l~q~se~~~l~r~~~e~llr~l~~~v~~~d~~kia~~l~~lkg~ld~d~~~ia~~~~~lf~f~DaV~~VL 1025 (1226)
T KOG4279|consen 956 LIQQSETELLVRVHMEMLLRGLRDFVLKKDRTKIAKMLDDLKGLLDADTAGIAQINLALFHFSDAVQPVL 1025 (1226)
T ss_pred HHhccccchhHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhhhccccccchhhhhhhhccchHHHHHHH
Confidence 4466788889999998888888665444444444433333334444444455555554545555555544
No 128
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=54.46 E-value=1.3e+02 Score=28.20 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 135 KDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 135 Ke~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
|.+-.+.+.-...+|+|..+.|..||+..+..-+.
T Consensus 88 KKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~ 122 (292)
T KOG4005|consen 88 KKARMEEMEYEIKDLTEENEILQNENDSLRAINES 122 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556777778888888888899999888876543
No 129
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=54.44 E-value=97 Score=28.02 Aligned_cols=57 Identities=18% Similarity=0.226 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023682 102 EEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESV 173 (279)
Q Consensus 102 ~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~ 173 (279)
.++-|..|+|.|+.-+ -.+++ |.+++.+.+-.+++.+..|..|+.....+|.....+
T Consensus 105 se~YWk~lAE~RR~AL---~eaL~------------ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~l 161 (200)
T PF07412_consen 105 SENYWKELAEERRKAL---EEALE------------ENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYL 161 (200)
T ss_dssp CHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH---HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888877533 34443 334444444455555555555555544444443333
No 130
>PRK14140 heat shock protein GrpE; Provisional
Probab=54.23 E-value=45 Score=29.79 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=23.2
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
-|-+-+.+|+.+.+++.+|++++.++.+|.+..++++..
T Consensus 38 ~~~~l~~~i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~r 76 (191)
T PRK14140 38 LLDEEQAKIAELEAKLDELEERYLRLQADFENYKRRIQK 76 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666666666666666666655543
No 131
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=53.73 E-value=1.6e+02 Score=29.97 Aligned_cols=34 Identities=15% Similarity=0.321 Sum_probs=22.9
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 023682 82 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRH 116 (279)
Q Consensus 82 ~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh 116 (279)
.|..+++.-+.|+..++ .++++|+..-+..|+|.
T Consensus 63 Tlva~~k~~r~~~~~l~-~~N~~l~~eN~~L~~r~ 96 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLI-SENEALKAENERLQKRE 96 (472)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 35677777778887765 46677777666555554
No 132
>PLN02189 cellulose synthase
Probab=53.73 E-value=9 Score=42.17 Aligned_cols=43 Identities=21% Similarity=0.627 Sum_probs=33.5
Q ss_pred cccccccccc----ccceEEecCC--CcccchhhHhc-----CCCCCCCccccc
Q 023682 229 QMICRACKAK----EASVLLMPCR--HLCLCKDCDVL-----VAVCPVCQFVKN 271 (279)
Q Consensus 229 ~~~C~iC~~~----~~~v~llPC~--HlclC~~C~~~-----l~~CPvCr~~i~ 271 (279)
...|.||++. ...-+|..|+ .+.+|..|..- -+.||.|++...
T Consensus 34 ~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 34 GQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred CccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 4489999997 5566888886 34589999854 489999998765
No 133
>PRK02119 hypothetical protein; Provisional
Probab=53.27 E-value=95 Score=23.33 Aligned_cols=49 Identities=12% Similarity=0.124 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 139 IENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 139 ie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
+..+..++.+||.++.-...-....-...-......+.|..+|..+..+
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~r 52 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANK 52 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555544444444444444555556667776666544
No 134
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=52.93 E-value=1.8e+02 Score=26.42 Aligned_cols=77 Identities=18% Similarity=0.316 Sum_probs=55.3
Q ss_pred HHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH---------------hhHHHHHHHHHHHHHHHHHHHHH
Q 023682 95 DQYIKVQEEYLAK---GVQDMKQRHMASFLSAIEKGLAKKLQ---------------EKDMEIENMNRKNRELIERIKQM 156 (279)
Q Consensus 95 D~~i~~q~e~lr~---~l~e~r~rh~~~ll~ave~~~~~rLr---------------eKe~Eie~~~kk~~eLeErl~ql 156 (279)
.++|.+++|.++- -|+|---||+.. .++...++.|.+ .-+++|-.+++|+.|||-+|+.|
T Consensus 71 ErILaLEad~~kWEqkYLEEs~mrq~a~--dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~qemE~RIK~L 148 (205)
T PF12240_consen 71 ERILALEADMTKWEQKYLEESAMRQFAM--DAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKCQEMENRIKAL 148 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhHHHHHHHHHHH
Confidence 4889999996542 278877777753 344445555554 22689999999999999999998
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 023682 157 AAEAQNWHYRAKYNESVVNLLKSN 180 (279)
Q Consensus 157 ~~E~qaWq~~A~~nea~a~~Lr~~ 180 (279)
.+.- .+.++|+..|+..
T Consensus 149 haqI-------~EKDAmIkVLQqr 165 (205)
T PF12240_consen 149 HAQI-------AEKDAMIKVLQQR 165 (205)
T ss_pred HHHH-------HHHHHHHHHHHhh
Confidence 7553 4778887766644
No 135
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.22 E-value=5.2 Score=34.72 Aligned_cols=25 Identities=24% Similarity=0.675 Sum_probs=21.0
Q ss_pred cchhhHhc-CCCCCCCcccccceEEE
Q 023682 252 LCKDCDVL-VAVCPVCQFVKNASVLV 276 (279)
Q Consensus 252 lC~~C~~~-l~~CPvCr~~i~~~v~v 276 (279)
+|..|... +..||.|..+|.+..+|
T Consensus 30 fC~kCG~~tI~~Cp~C~~~IrG~y~v 55 (158)
T PF10083_consen 30 FCSKCGAKTITSCPNCSTPIRGDYHV 55 (158)
T ss_pred HHHHhhHHHHHHCcCCCCCCCCceec
Confidence 68888765 68999999999988765
No 136
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=51.40 E-value=3.2e+02 Score=28.80 Aligned_cols=77 Identities=22% Similarity=0.398 Sum_probs=49.5
Q ss_pred hhhhHHHHHHhhHHHHH-HHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHH
Q 023682 78 SLADNVRTELDRQKEEF-DQYIKVQEEYLAKGVQDMKQRHM----ASFLSAIEKGL---AKKLQEKDMEIENMNRKNREL 149 (279)
Q Consensus 78 ~~~~~l~~~l~~q~~Ei-D~~i~~q~e~lr~~l~e~r~rh~----~~ll~ave~~~---~~rLreKe~Eie~~~kk~~eL 149 (279)
.+++. -+|+.|-.|+ |.|+++.+++|-....-+-..|. ..=+.-++..+ ..+|..|+.|+.++..+..++
T Consensus 158 AlsQN--~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~q~dq~ 235 (617)
T PF15070_consen 158 ALSQN--RELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLKEKLELKSQEAQSLQEQRDQY 235 (617)
T ss_pred HHHhH--HHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45554 4788888888 89999999986443333344444 33333343322 346788899999998887766
Q ss_pred HHHHHHH
Q 023682 150 IERIKQM 156 (279)
Q Consensus 150 eErl~ql 156 (279)
-..+.+-
T Consensus 236 ~~~Lqqy 242 (617)
T PF15070_consen 236 LGHLQQY 242 (617)
T ss_pred HHHHHHH
Confidence 6555544
No 137
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=51.38 E-value=1.9e+02 Score=29.07 Aligned_cols=72 Identities=17% Similarity=0.192 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 112 MKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 112 ~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
+|..+.+.=+...+ +++++...+...+.+.+++++..+.++..+--.-...-...+.....+..+|..+..+
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q 109 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQ 109 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHH
No 138
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=50.87 E-value=2e+02 Score=30.31 Aligned_cols=76 Identities=11% Similarity=0.295 Sum_probs=48.5
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 87 LDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWH 164 (279)
Q Consensus 87 l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq 164 (279)
+++|..++.+=|.....+.-....|.+ ...+.+...+ ..+..||-..|.+++....+...|++.+..+..-..+|.
T Consensus 344 ~~q~~~~~~~~l~~~~~~~~~~~~e~~-~~~~~~~~~~-~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~ 419 (656)
T PRK06975 344 LNRKVDRLDQELVQRQQANDAQTAELR-VKTEQAQASV-HQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWM 419 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhH
Confidence 345555555444444444444445552 2233333322 345677788888999999999999999988887778886
No 139
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=50.63 E-value=95 Score=22.53 Aligned_cols=47 Identities=21% Similarity=0.211 Sum_probs=33.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 023682 100 VQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQ 155 (279)
Q Consensus 100 ~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~q 155 (279)
-...+++..|....+|...-|..... ...|.+.+.++|.||..-++|
T Consensus 12 ~~~~~~W~~L~~~l~rY~~vL~~R~~---------l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 12 DEKIRLWDALENFLKRYNKVLLDRAA---------LIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 34556777777777777765554332 456779999999999887765
No 140
>PRK05097 Ter macrodomain organizer matS-binding protein; Provisional
Probab=50.28 E-value=13 Score=31.75 Aligned_cols=34 Identities=12% Similarity=0.314 Sum_probs=26.0
Q ss_pred HHHhhHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHH
Q 023682 85 TELDRQKEEFDQYIKVQE-----EYLAKGVQDMKQRHMA 118 (279)
Q Consensus 85 ~~l~~q~~EiD~~i~~q~-----e~lr~~l~e~r~rh~~ 118 (279)
..++.+-.+|-..|..|. -+|+.++.-+|+||+.
T Consensus 45 ~~le~~P~~v~~WI~~hm~p~l~nklkQaIRArRKRhFN 83 (150)
T PRK05097 45 LKLENEPVKVLEWIDKHMNPELVNRMKQTIRARRKRHFN 83 (150)
T ss_pred HHhccCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHccCC
Confidence 345666677777777764 3899999999999983
No 141
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=50.04 E-value=4.2e+02 Score=29.80 Aligned_cols=93 Identities=25% Similarity=0.361 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023682 89 RQKEEFDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGL----------AKKLQEKDMEIENMNRKNRELIERIKQM 156 (279)
Q Consensus 89 ~q~~EiD~~i~~q~e--~lr~~l~e~r~rh~~~ll~ave~~~----------~~rLreKe~Eie~~~kk~~eLeErl~ql 156 (279)
+|.....+|..++.+ .+...+--.+-.|...-+..++..+ ..++.+.+.+|+.++.+..++.+.+..+
T Consensus 207 ~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~ 286 (1163)
T COG1196 207 RQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL 286 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555544 3333333333344433333333332 3446666677777777777777766666
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q 023682 157 AAEAQNWHYRAKYNESVVNLLKSNL 181 (279)
Q Consensus 157 ~~E~qaWq~~A~~nea~a~~Lr~~L 181 (279)
..+...-.....+-+.....++..+
T Consensus 287 ~~~~~~~~~~~~~le~~~~~~~~~~ 311 (1163)
T COG1196 287 QEELLELKEEIEELEGEISLLRERL 311 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554444433444444444444333
No 142
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=49.75 E-value=58 Score=27.27 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=39.9
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 023682 82 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIEN 141 (279)
Q Consensus 82 ~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~ 141 (279)
++...|..-..|+|++.+.+.+ +-..++....-|.-+|..+..++-|-++.|++
T Consensus 71 Eis~~L~~vieELdqi~~~~~~------~~d~K~kiL~dL~HLE~Vv~~KIaEIe~dlek 124 (125)
T PF11944_consen 71 EISPNLRYVIEELDQITGREQA------EVDLKQKILDDLRHLEKVVNSKIAEIERDLEK 124 (125)
T ss_pred hccHHHHHHHHHHHHHHcchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566677788899999885433 22456677777788898888888887777765
No 143
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=49.59 E-value=4.4 Score=32.22 Aligned_cols=43 Identities=21% Similarity=0.503 Sum_probs=33.7
Q ss_pred ccccccccccccccccccceEEecCCCcccchhhHhcCCCCCCCcccc
Q 023682 223 SISRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVK 270 (279)
Q Consensus 223 ~~~~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i 270 (279)
...+.....|..|..+.+-... |. +|..|+.....|+-|..+.
T Consensus 49 YKpLt~p~kC~~C~qktVk~AY----h~-iC~~Ca~~~~vCaKC~k~~ 91 (92)
T PF10217_consen 49 YKPLTQPKKCNKCQQKTVKHAY----HV-ICDPCAKELKVCAKCGKPP 91 (92)
T ss_pred cccCCCCccccccccchHHHHH----HH-HHHHHHHhhccCcccCCCC
Confidence 3445667789999988765554 44 8999999999999998763
No 144
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=49.05 E-value=1.3e+02 Score=28.75 Aligned_cols=31 Identities=26% Similarity=0.283 Sum_probs=19.1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
+|++-+.||+...++..++++.+..+...-.
T Consensus 212 ~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~ 242 (312)
T smart00787 212 KLKKLLQEIMIKVKKLEELEEELQELESKIE 242 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777666666654443
No 145
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=48.77 E-value=3.3e+02 Score=28.30 Aligned_cols=59 Identities=19% Similarity=0.351 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 104 YLAKGVQDMKQRHMAS--FLSAIEKGL---AKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 104 ~lr~~l~e~r~rh~~~--ll~ave~~~---~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
+|+..+.+.+++---+ .+..++..+ ..+|=++++|+.-+++++..|++.++.|..|+.-
T Consensus 117 kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~r 180 (546)
T KOG0977|consen 117 KLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSR 180 (546)
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555444332 222233222 3556777788888888888888888888777654
No 146
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=48.50 E-value=7.1 Score=34.21 Aligned_cols=31 Identities=23% Similarity=0.456 Sum_probs=22.3
Q ss_pred ccccccccccccceEEecCCCcccchhhHhcCCCCCCCcccccceEE
Q 023682 229 QMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVL 275 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i~~~v~ 275 (279)
...|.+| ||. |.. ..-..||+|..++..+..
T Consensus 134 ~~vC~vC------------Gy~--~~g--e~P~~CPiCga~k~~F~~ 164 (166)
T COG1592 134 VWVCPVC------------GYT--HEG--EAPEVCPICGAPKEKFEK 164 (166)
T ss_pred EEEcCCC------------CCc--ccC--CCCCcCCCCCChHHHhhc
Confidence 4567776 665 555 556899999999877654
No 147
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.27 E-value=7.2 Score=32.96 Aligned_cols=25 Identities=24% Similarity=0.758 Sum_probs=18.3
Q ss_pred cchhhHhc-CCCCCCCcccccceEEE
Q 023682 252 LCKDCDVL-VAVCPVCQFVKNASVLV 276 (279)
Q Consensus 252 lC~~C~~~-l~~CPvCr~~i~~~v~v 276 (279)
+|..|... +..||+|..+|.+...|
T Consensus 30 fcskcgeati~qcp~csasirgd~~v 55 (160)
T COG4306 30 FCSKCGEATITQCPICSASIRGDYYV 55 (160)
T ss_pred HHhhhchHHHhcCCccCCccccccee
Confidence 45556543 57899999999887654
No 148
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=48.02 E-value=1.2e+02 Score=23.08 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=16.3
Q ss_pred hhhhhHHHHHHhhHHHHHHHHHHHh
Q 023682 77 LSLADNVRTELDRQKEEFDQYIKVQ 101 (279)
Q Consensus 77 ~~~~~~l~~~l~~q~~EiD~~i~~q 101 (279)
++.++.|+.-|..-.+|++++=-.+
T Consensus 9 ~~p~~~Ls~vl~~LqDE~~hm~~e~ 33 (79)
T PF06657_consen 9 QSPGEALSEVLKALQDEFGHMKMEH 33 (79)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777778887654333
No 149
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=48.00 E-value=1e+02 Score=23.96 Aligned_cols=29 Identities=34% Similarity=0.470 Sum_probs=23.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEA 160 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~ 160 (279)
|---+.||++.+.+.++|+.+++.|...-
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk 31 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQK 31 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445699999999999999999887543
No 150
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.67 E-value=2.1e+02 Score=28.05 Aligned_cols=11 Identities=18% Similarity=0.172 Sum_probs=5.1
Q ss_pred HHHHHHHHHHH
Q 023682 103 EYLAKGVQDMK 113 (279)
Q Consensus 103 e~lr~~l~e~r 113 (279)
|+||..++|..
T Consensus 217 eklR~r~eeem 227 (365)
T KOG2391|consen 217 EKLRRRREEEM 227 (365)
T ss_pred HHHHHHHHHHH
Confidence 44555444433
No 151
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=47.57 E-value=1.2e+02 Score=22.83 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=35.7
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023682 133 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 182 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lq 182 (279)
.....|++.+..+|.+|.+....|..|++..+..-..-.....+|-..++
T Consensus 21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~ 70 (72)
T PF06005_consen 21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE 70 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34556889999999999999999999998887554444444444444443
No 152
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=47.55 E-value=1.7e+02 Score=24.65 Aligned_cols=53 Identities=17% Similarity=0.357 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023682 116 HMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNES 172 (279)
Q Consensus 116 h~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea 172 (279)
.+.+-+..+| .+.-+||.||..+.+++..||..+.++......-...+.+.+.
T Consensus 18 ~~e~~~K~le----~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~ 70 (143)
T PF12718_consen 18 ELEAKVKQLE----QENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK 70 (143)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444 5677899999999999999999999998888877776666554
No 153
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=47.51 E-value=1.7e+02 Score=24.47 Aligned_cols=65 Identities=17% Similarity=0.357 Sum_probs=27.5
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 81 DNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEA 160 (279)
Q Consensus 81 ~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~ 160 (279)
++|..-++.|..++..+ +.....+...+.+. ++|...... .|+.++++..+|..|+=++..=.
T Consensus 33 ~dL~~R~~~Q~~~~~~~-~~~l~~i~~~l~~L-~~~~~~~~~---------------rl~~~r~r~~~L~hR~l~v~~~~ 95 (141)
T PF13874_consen 33 EDLKKRVEAQEEEIAQH-RERLKEINDKLEEL-QKHDLETSA---------------RLEEARRRHQELSHRLLRVLRKQ 95 (141)
T ss_dssp -------------HHHH-HHHHHHHHHHHHHH-HHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHhHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788887777643 23333444444444 444433333 34567788888887776665433
Q ss_pred HH
Q 023682 161 QN 162 (279)
Q Consensus 161 qa 162 (279)
+.
T Consensus 96 ei 97 (141)
T PF13874_consen 96 EI 97 (141)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 154
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=47.49 E-value=3.5e+02 Score=28.16 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023682 103 EYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLL 177 (279)
Q Consensus 103 e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~L 177 (279)
++|...|...++. +..|....+ .+.........|.+.+..++.++..++.+|..+...+.....+++.....+
T Consensus 174 ~~l~~eL~~~~ee-~e~L~~~~k-el~~~~e~l~~E~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~~l 246 (546)
T PF07888_consen 174 ERLEAELEQEEEE-MEQLKQQQK-ELTESSEELKEERESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELDKL 246 (546)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555443332 233333322 223334445567778888888888888888888887777776665544443
No 155
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=47.17 E-value=2.5e+02 Score=26.37 Aligned_cols=32 Identities=31% Similarity=0.364 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
.||..-+.-+.+|++.|.+|.+|.+..+..+.
T Consensus 193 kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 193 KEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56666677777777777777777776665555
No 156
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=47.05 E-value=65 Score=29.62 Aligned_cols=45 Identities=31% Similarity=0.406 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 140 ENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 140 e~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
+.+.|+..+|++++.++..+...++......+.+|.-|-..+..+
T Consensus 1 E~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~a 45 (246)
T PF00769_consen 1 EEAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQA 45 (246)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 157
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=46.53 E-value=1.4e+02 Score=25.66 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 136 DMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 136 e~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
+.-+++..+-...++..+.-+..|...++.+++..+..+..|+.-|...+..
T Consensus 39 ~~K~~~~~~~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~ 90 (162)
T PF05565_consen 39 EEKADNIAKVIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEA 90 (162)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777778888888888999999999999999999999999888765
No 158
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=46.18 E-value=57 Score=24.32 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=29.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHY 165 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~ 165 (279)
..+....+++++.+++.++++.+.+|..|...|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 46788889999999999999999999988887764
No 159
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=46.15 E-value=1.2e+02 Score=22.56 Aligned_cols=57 Identities=12% Similarity=0.268 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 103 EYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 103 e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
.++...+.+-++.|.+.|...... ..-=++-+.=...+.+....+..+|+++.....
T Consensus 17 ~~i~~~~~~l~~l~~~~l~~~~~d--~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 17 DKIKEKLNELRKLHKKILSSPDQD--SELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555666667776666555532 111133333444556666677777777777754
No 160
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=46.14 E-value=77 Score=22.98 Aligned_cols=33 Identities=15% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNW 163 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaW 163 (279)
.+..+..|+..+.+++.+++.....+..|-+.+
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345666677777777777777777777666665
No 161
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=46.03 E-value=1.8e+02 Score=24.50 Aligned_cols=62 Identities=19% Similarity=0.318 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 122 SAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 122 ~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
..+| ..-+|+.-.|+|++.+.+++.+..+.++++...+...-+..+.-+.....+-..++.+
T Consensus 73 ~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel 134 (143)
T PF12718_consen 73 SNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEEL 134 (143)
T ss_pred HhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3344 6778899999999999999999999999999888877777776666655555555444
No 162
>PF14282 FlxA: FlxA-like protein
Probab=45.57 E-value=1.1e+02 Score=24.39 Aligned_cols=51 Identities=16% Similarity=0.343 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH---HHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 136 DMEIENMNRKNRELIERIKQMAA-EA---QNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 136 e~Eie~~~kk~~eLeErl~ql~~-E~---qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
+..|+.+.+++..|.+.|+.|.. +. ..=+.....-.+-+..|.++|.++..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777777776665 11 12233333333344445555554443
No 163
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=45.15 E-value=1.7e+02 Score=23.77 Aligned_cols=51 Identities=24% Similarity=0.435 Sum_probs=23.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 98 IKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 98 i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
||.|+.-|+.++-+-..... .+...|++||.+|-++.-.+--|..+..||.
T Consensus 10 LraQ~~vLKKaVieEQ~k~~---------~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~ 60 (102)
T PF10205_consen 10 LRAQNQVLKKAVIEEQAKNA---------ELKEQLKEKEQALRKLEQENDSLTFRNQQLT 60 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666544332221 2223455555554444444444444444444
No 164
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=44.79 E-value=4.4e+02 Score=28.59 Aligned_cols=85 Identities=19% Similarity=0.298 Sum_probs=67.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 023682 99 KVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLK 178 (279)
Q Consensus 99 ~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr 178 (279)
+-|.+.|+-.|.. ...|.-.|.+-|| ...-+|-+|+..|.+....+..+++-...+..|.........-.+..++.|+
T Consensus 321 r~hi~~lkesl~~-ke~~~~~Lqsdve-~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq 398 (775)
T PF10174_consen 321 RQHIEVLKESLRA-KEQEAEMLQSDVE-ALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQ 398 (775)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777742 3445555555555 5677899999999999999999999999999999998888888888888888
Q ss_pred HHHHHHH
Q 023682 179 SNLQQAI 185 (279)
Q Consensus 179 ~~Lqq~~ 185 (279)
..++.+.
T Consensus 399 ~kie~Le 405 (775)
T PF10174_consen 399 KKIENLE 405 (775)
T ss_pred HHHHHHH
Confidence 8865554
No 165
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=44.58 E-value=8.4 Score=36.81 Aligned_cols=43 Identities=19% Similarity=0.448 Sum_probs=29.0
Q ss_pred cccccccccccccceEEecC----C-CcccchhhHhc----CCCCCCCcccc
Q 023682 228 HQMICRACKAKEASVLLMPC----R-HLCLCKDCDVL----VAVCPVCQFVK 270 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC----~-HlclC~~C~~~----l~~CPvCr~~i 270 (279)
....|.||++.+..-++..- | -+..|.-|... -..||.|....
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~~ 234 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEESK 234 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCCC
Confidence 34589999999975444332 2 12379999754 27999998864
No 166
>smart00338 BRLZ basic region leucin zipper.
Probab=44.57 E-value=1.1e+02 Score=21.76 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023682 145 KNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSN 180 (279)
Q Consensus 145 k~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~ 180 (279)
...+||..+..|..|+..++..+..-+.....|+..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777666655544444444433
No 167
>PRK14139 heat shock protein GrpE; Provisional
Probab=44.50 E-value=80 Score=28.08 Aligned_cols=22 Identities=0% Similarity=0.013 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 023682 90 QKEEFDQYIKVQEEYLAKGVQDM 112 (279)
Q Consensus 90 q~~EiD~~i~~q~e~lr~~l~e~ 112 (279)
...|++.+ ..+.+.++..+.+.
T Consensus 30 ~~~e~~~l-~~~l~~le~e~~el 51 (185)
T PRK14139 30 AEDAAPAL-EAELAEAEAKAAEL 51 (185)
T ss_pred cchhHHHH-HHHHHHHHHHHHHH
Confidence 34455442 23344555555443
No 168
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.32 E-value=9.2 Score=36.21 Aligned_cols=43 Identities=19% Similarity=0.533 Sum_probs=30.4
Q ss_pred ccccccccccccc----------ceEEecCCCcccchhhHh------cCCCCCCCccccc
Q 023682 228 HQMICRACKAKEA----------SVLLMPCRHLCLCKDCDV------LVAVCPVCQFVKN 271 (279)
Q Consensus 228 ~~~~C~iC~~~~~----------~v~llPC~HlclC~~C~~------~l~~CPvCr~~i~ 271 (279)
+...|.||..+-- ++.-|.|+|. +=..|.. +..+||.|...++
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhh
Confidence 5678999987533 3445899998 5555543 3589999987665
No 169
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=44.07 E-value=1.5e+02 Score=23.08 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=11.9
Q ss_pred HHHHHHHHHhHH--HHHHHHHHHH
Q 023682 92 EEFDQYIKVQEE--YLAKGVQDMK 113 (279)
Q Consensus 92 ~EiD~~i~~q~e--~lr~~l~e~r 113 (279)
..+|.++.+..+ .+...+++.|
T Consensus 26 ~~vd~i~~ld~~~r~l~~~~e~lr 49 (108)
T PF02403_consen 26 EDVDEIIELDQERRELQQELEELR 49 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777776655 3444444433
No 170
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=43.66 E-value=52 Score=23.98 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 142 MNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 142 ~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
++-|++.||.|+.....+.+.-+..++
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~ 56 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAK 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666555444444
No 171
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=43.64 E-value=5.6e+02 Score=29.47 Aligned_cols=39 Identities=8% Similarity=0.236 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023682 115 RHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 115 rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl 153 (279)
.+++.....+....+..++.+..+++.+.++..+++..+
T Consensus 254 ~~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1353)
T TIGR02680 254 QRYRRYARTMLRRRATRLRSAQTQYDQLSRDLGRARDEL 292 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333333333333333333333333333
No 172
>PRK09039 hypothetical protein; Validated
Probab=43.54 E-value=3.1e+02 Score=26.44 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=48.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 133 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
-++..+|..++.++..|+.++..+..+-.+-+..-.+.......|...|+.+++.
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445678888999999999999999999999999999999999999999999865
No 173
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=43.11 E-value=2.2e+02 Score=24.63 Aligned_cols=25 Identities=28% Similarity=0.411 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 133 QEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
+.||.|..++..++.+-++++.++.
T Consensus 101 kkKD~Ea~~L~~KLkeEq~kv~~ME 125 (152)
T PF11500_consen 101 KKKDAEAMRLAEKLKEEQEKVAEME 125 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999988888887777655
No 174
>PRK14157 heat shock protein GrpE; Provisional
Probab=42.98 E-value=77 Score=29.16 Aligned_cols=19 Identities=5% Similarity=-0.136 Sum_probs=10.3
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 023682 98 IKVQEEYLAKGVQDMKQRH 116 (279)
Q Consensus 98 i~~q~e~lr~~l~e~r~rh 116 (279)
+..+.+.++..+.+...+.
T Consensus 82 ~~~~l~~le~e~~e~kd~l 100 (227)
T PRK14157 82 TLTPLGQAKKEAAEYLEAL 100 (227)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3345556666666654443
No 175
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=42.61 E-value=4.5e+02 Score=28.08 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023682 149 LIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 182 (279)
Q Consensus 149 LeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lq 182 (279)
+..|.++|..|.+..+...+..|.....|..+++
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555554
No 176
>PRK13677 hypothetical protein; Provisional
Probab=42.44 E-value=85 Score=26.21 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=39.0
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 023682 82 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIEN 141 (279)
Q Consensus 82 ~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~ 141 (279)
++...|-.-..|+|++.+.+.+. ...++....-|.-+|..++.++-|-|+.|++
T Consensus 71 Ei~~~l~~vidELd~i~~~~~~e------~d~K~kiL~dLrHLE~Vv~~KIaEIe~dLek 124 (125)
T PRK13677 71 EISPNLRYVIDELDQICQRDREE------VDLKRKILDDLRHLESVVANKISEIEADLEK 124 (125)
T ss_pred cccHHHHHHHHHHHHHhcchhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35555667778999998865442 2556666667777888888888888877765
No 177
>PRK14155 heat shock protein GrpE; Provisional
Probab=42.27 E-value=81 Score=28.55 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 139 IENMNRKNRELIERIKQMAAEAQNWHYR 166 (279)
Q Consensus 139 ie~~~kk~~eLeErl~ql~~E~qaWq~~ 166 (279)
|+.+.+++.+|++++.++.+|.+..+++
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~RKR 49 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTKRR 49 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444333
No 178
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=41.33 E-value=19 Score=40.54 Aligned_cols=47 Identities=23% Similarity=0.534 Sum_probs=34.2
Q ss_pred ccccccccccccceEEec-CCCcc----cchhhHhcC-------CCCCCCcccccceEEE
Q 023682 229 QMICRACKAKEASVLLMP-CRHLC----LCKDCDVLV-------AVCPVCQFVKNASVLV 276 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~llP-C~Hlc----lC~~C~~~l-------~~CPvCr~~i~~~v~v 276 (279)
.+.|.-|+..-.. .+.| ||+.- .|..|...+ ..||-|..+.......
T Consensus 667 ~rkCPkCG~~t~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~~~~ 725 (1337)
T PRK14714 667 RRRCPSCGTETYE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPYQRR 725 (1337)
T ss_pred EEECCCCCCcccc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccccceE
Confidence 3689999985544 3778 98552 599998764 2899999887766543
No 179
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.95 E-value=73 Score=23.10 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=22.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
+.+.+.+++.+..++.+|++.+..+...-..-...|+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4556667777777777777777777333333334443
No 180
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=40.87 E-value=96 Score=31.59 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 136 DMEIENMNRKNRELIERIKQMAAEAQNWHYR 166 (279)
Q Consensus 136 e~Eie~~~kk~~eLeErl~ql~~E~qaWq~~ 166 (279)
..|++.+.++..+++++|+.+..|+...+..
T Consensus 89 rqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 89 RRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777777666666654443
No 181
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=40.74 E-value=2.9e+02 Score=25.35 Aligned_cols=86 Identities=19% Similarity=0.254 Sum_probs=51.2
Q ss_pred HHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhhHHHHHHHHHHHHHHHH
Q 023682 85 TELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKK-------------LQEKDMEIENMNRKNRELIE 151 (279)
Q Consensus 85 ~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~r-------------LreKe~Eie~~~kk~~eLeE 151 (279)
++|-.-..-|..+..-|+++.-..+.+-..-+.| ++.+|-.....| |..|.+-++++...+. .+
T Consensus 83 s~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiR-li~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~~~Kl~~~~~--~d 159 (234)
T cd07665 83 SQLAEVEEKIEQLHQEQANNDFFLLAELLADYIR-LLSAVRGAFDQRMKTWQRWQDAQAMLQKKREAEARLLWANK--PD 159 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--ch
Confidence 3344445566666677777776766666665554 346666655555 2223333333332222 36
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 023682 152 RIKQMAAEAQNWHYRAKYNESV 173 (279)
Q Consensus 152 rl~ql~~E~qaWq~~A~~nea~ 173 (279)
++.++..|.+.|+.++...+..
T Consensus 160 K~~~a~~Ev~e~e~k~~~a~~~ 181 (234)
T cd07665 160 KLQQAKDEIAEWESRVTQYERD 181 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888988888888776553
No 182
>PF06303 MatP: Organiser of macrodomain of Terminus of chromosome; InterPro: IPR009390 Many bacteria have circular genomes that are large in comparison to their cellular dimensions; this imposes the necessity for compaction of the chromosome during cellular growth, replication, transcription, and segregation. Compaction of chromosomes results in the formation of structures called nucleoids. Nucleoids can be generated by a number of different processes: they include unrestrained DNA supercoiling, formation of a chromatin-like structure through the interaction of DNA binding proteins, condensation by structural maintenance of chromosomes (SMC)-like proteins, and macromolecular crowding []. Chromosome replication and segregation are intimately linked and tightly controlled to ensure that daughter cells each receive a complete copy of the genome. Chromosomes have replication origin (Ori) and termination (Ter) regions that are diametrically opposed. During the process of chromosome replication and cell division the Ori and Ter regions form two macrodomains (MDs), the Ori MD is centred on migS, a 25 bp sequence, that acts as the cis-acting site for the bipolar positioning of oriC []. The Ter MD is centred on dif (deletion-induced filamentation), which is a resolvase site that reduces chromosome multimers to monomers []. The Ori and Ter MDs are insulated from one and other by non-structural regions and other nucleoids. Chromosome replication initiates bidirectionally from oriC. Within the Ori MD with sister chromatids being located in separate cell halves and with the Ter macrodomain anchored to the cell pole. Cell division occurs with the completion of replication of the Ter region and the subsequent separation of the two sister chromatids [, ]. This entry contains MatP (YcbG), which is a component of the MatP/MatS site-specific system that organises the Ter macrodomain (MD) in Escherichia coli (strain K12) and related enterobacteria during replication of the chromosome. In E. coli there are 23 matS sequences, located in the Ter region which is centred on dif. The matS consensus is a palindromic sequence 5'-GTGAC[AG][CT]GTCAC, which is the recognition sequence for MatP. MatP binds to the matS sequences; and is critical for Ter MD formation. Inactivation of matP causes severe defects in chromosome segregation and cell division revealing its role as a major organiser of the Ter MD [].
Probab=40.14 E-value=25 Score=30.23 Aligned_cols=32 Identities=19% Similarity=0.469 Sum_probs=23.6
Q ss_pred HHhhHHHHHHHHHHHhH-----HHHHHHHHHHHHHHH
Q 023682 86 ELDRQKEEFDQYIKVQE-----EYLAKGVQDMKQRHM 117 (279)
Q Consensus 86 ~l~~q~~EiD~~i~~q~-----e~lr~~l~e~r~rh~ 117 (279)
.++.+-.+|+..|..+. -+|+.+|.-+|+||.
T Consensus 46 ~le~~P~~v~~WI~~~m~~~l~nklkQaIRArRkR~f 82 (148)
T PF06303_consen 46 KLENEPVKVNEWIKKHMNPELWNKLKQAIRARRKRHF 82 (148)
T ss_pred HhhcChHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhc
Confidence 34555567777777653 389999999999997
No 183
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=40.11 E-value=3.1e+02 Score=27.23 Aligned_cols=59 Identities=20% Similarity=0.402 Sum_probs=27.0
Q ss_pred HHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 93 EFDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 93 EiD~~i~~q~e--~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
.||.++.+..+ ++...+++.|.+. +.+...+.+..+.+ ++.+.+..+..+|.++++.+.
T Consensus 26 ~vd~i~~ld~~~r~l~~~~~~lr~~r-----n~~sk~i~~~~~~~-~~~~~l~~~~~~l~~~~~~~~ 86 (425)
T PRK05431 26 DVDELLELDEERRELQTELEELQAER-----NALSKEIGQAKRKG-EDAEALIAEVKELKEEIKALE 86 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhcC-CcHHHHHHHHHHHHHHHHHHH
Confidence 47877777765 3444444433333 23333333322222 233444444455555554444
No 184
>PRK04406 hypothetical protein; Provisional
Probab=40.09 E-value=1.6e+02 Score=22.23 Aligned_cols=47 Identities=2% Similarity=0.136 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 141 NMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 141 ~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
.+..++.+||.++.-...-....-...-.....++.|..+|..+..+
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~r 54 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGK 54 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555444444444445555556677777666544
No 185
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=40.08 E-value=3.9e+02 Score=26.59 Aligned_cols=83 Identities=14% Similarity=0.227 Sum_probs=55.5
Q ss_pred hhhhHHHHHHhhHHH---HHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023682 78 SLADNVRTELDRQKE---EFDQYIKVQEEYLAKGVQDMK-QRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 78 ~~~~~l~~~l~~q~~---EiD~~i~~q~e~lr~~l~e~r-~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl 153 (279)
.+|-...+..++|.. +-+++++.|..-+..+.+.++ -++...++...+ ..|+..+.+++...+++.++...+
T Consensus 45 gLGagg~~f~QqQ~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q----~el~~l~~~~~~~~~ql~e~Q~~v 120 (391)
T COG2959 45 GLGAGGYYFGQQQNVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQ----AELDRLERQLETLQKQLSELQKKV 120 (391)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHH
Confidence 456666666676655 446677777776666554332 245555555555 345557888999999999999999
Q ss_pred HHHHHH-HHHHH
Q 023682 154 KQMAAE-AQNWH 164 (279)
Q Consensus 154 ~ql~~E-~qaWq 164 (279)
+.++.- ...|.
T Consensus 121 ~~is~~~~~dWl 132 (391)
T COG2959 121 ATISGSDRKDWL 132 (391)
T ss_pred HHhccCChhhHH
Confidence 988844 55665
No 186
>PHA03415 putative internal virion protein; Provisional
Probab=40.05 E-value=1.1e+02 Score=33.44 Aligned_cols=87 Identities=21% Similarity=0.257 Sum_probs=60.5
Q ss_pred hhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH--
Q 023682 80 ADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDM-----------KQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKN-- 146 (279)
Q Consensus 80 ~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~-----------r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~-- 146 (279)
.|..++-+..-..|.|-+++.-.|.|-+.|.++ +.+.++.-=.++|+.+.+-|-..|+|-.+..+-.
T Consensus 298 n~naas~~r~~~n~~~g~~~~~~~~~~~~~~~~~g~g~~~~~~~~s~r~~~ardale~kvt~eL~rrd~~ws~~G~v~~d 377 (1019)
T PHA03415 298 NDNAASFFRMNSNEADGLFAAWDDGLEKEIAKREGFGTAQIKLDASGRYADAKDALERKVADELARRDAEWSRFGAVMAD 377 (1019)
T ss_pred CccHHHHHHHhhhhhhhHHHHHHhHHHHHHHHhcCccHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhHHHHhcCCccCC
Confidence 356778888889999999999999999999884 3344566667788888877755555555544433
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023682 147 RELIERIKQMAAEAQNWHYR 166 (279)
Q Consensus 147 ~eLeErl~ql~~E~qaWq~~ 166 (279)
--+--.+++|..|.+.|...
T Consensus 378 p~~dp~IarLAd~~~~~he~ 397 (1019)
T PHA03415 378 PNLDPDIARLADESDAFHGQ 397 (1019)
T ss_pred CCCChHHHHHHHHHHHHHHH
Confidence 22334566666666666665
No 187
>PRK14159 heat shock protein GrpE; Provisional
Probab=39.96 E-value=92 Score=27.44 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023682 142 MNRKNRELIERIKQMAAEAQNW 163 (279)
Q Consensus 142 ~~kk~~eLeErl~ql~~E~qaW 163 (279)
+.++..+|++++.++.+|.+..
T Consensus 35 l~~e~~elkd~~lR~~AdfeN~ 56 (176)
T PRK14159 35 LQKDYDELKDKYMRANAEFENI 56 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 188
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=39.84 E-value=59 Score=23.86 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=18.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Q 023682 129 AKKLQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 129 ~~rLreKe~Eie~~~kk~~eLeErl 153 (279)
+.-|+..-+||+++.+++.+|.-++
T Consensus 20 ~~tL~~LH~EIe~Lq~~~~dL~~kL 44 (60)
T PF14916_consen 20 AQTLKGLHAEIERLQKRNKDLTFKL 44 (60)
T ss_pred HHHHHHHHHHHHHHHHhccccceee
Confidence 3445566679999999999886544
No 189
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=39.64 E-value=1.5e+02 Score=22.25 Aligned_cols=42 Identities=17% Similarity=0.275 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 023682 142 MNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 183 (279)
Q Consensus 142 ~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq 183 (279)
+.++++|-.+.|.+|..|.+.+...=..+..++..|+.++..
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e 44 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKE 44 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345556666666666666666666666666666666655543
No 190
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=39.54 E-value=3.5e+02 Score=27.99 Aligned_cols=77 Identities=16% Similarity=0.156 Sum_probs=41.1
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023682 94 FDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESV 173 (279)
Q Consensus 94 iD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~ 173 (279)
+|.||++- +|...-+|+.+|-... |++.+++|.++.++...|+-+++.+..-.++-...-+..|+-
T Consensus 27 e~ef~rl~--k~fed~~ek~~r~~ae------------~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~d 92 (604)
T KOG3564|consen 27 EDEFIRLR--KDFEDFEEKWKRTDAE------------LGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEAD 92 (604)
T ss_pred HHHHHHHH--HHHHHHHHHHhhhhHH------------HHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhhh
Confidence 56666543 5556666666665433 344455666666666666666555544444444444444444
Q ss_pred HHHHHHHHHHH
Q 023682 174 VNLLKSNLQQA 184 (279)
Q Consensus 174 a~~Lr~~Lqq~ 184 (279)
-+.+..+++++
T Consensus 93 ~~~~E~~i~~i 103 (604)
T KOG3564|consen 93 CEKLETQIQLI 103 (604)
T ss_pred HHHHHHHHHHH
Confidence 44455555444
No 191
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=39.51 E-value=1.5e+02 Score=26.99 Aligned_cols=47 Identities=15% Similarity=0.095 Sum_probs=31.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023682 127 GLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLL 177 (279)
Q Consensus 127 ~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~L 177 (279)
...++|||||+-|-.+.--...||++. -|--+-+..|...-+++..-
T Consensus 61 ~L~~~LrEkEErILaLEad~~kWEqkY----LEEs~mrq~a~dAaa~aa~~ 107 (205)
T PF12240_consen 61 NLKELLREKEERILALEADMTKWEQKY----LEESAMRQFAMDAAATAAAQ 107 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhHHH
Confidence 455778999999988888888777543 44445566666555555433
No 192
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=39.26 E-value=6e+02 Score=28.55 Aligned_cols=73 Identities=21% Similarity=0.246 Sum_probs=38.4
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023682 81 DNVRTELDRQKEEFDQYIKVQEEYLAKG-------VQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 81 ~~l~~~l~~q~~EiD~~i~~q~e~lr~~-------l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl 153 (279)
.|+..+|.+|+.++-++..-|-|..|+- |+-+.-||+..-+..-+..--+|| ++|+.+-++++.+|.+.+
T Consensus 879 ed~~~~l~~qQe~~a~l~~sQ~el~~~l~~ql~g~le~~l~~~iEk~lks~~d~~~~rl---~e~la~~e~~~r~~~~qi 955 (1283)
T KOG1916|consen 879 EDLLPQLLAQQETMAQLMASQKELQRQLSNQLTGPLEVALGRMIEKSLKSNADALWARL---QEELAKNEKALRDLQQQI 955 (1283)
T ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhHHHHHHHH---HHHHHhhhhhhhHHHHHH
Confidence 4566667777777777666665533321 222223333222222222222333 346777777777887776
Q ss_pred HHH
Q 023682 154 KQM 156 (279)
Q Consensus 154 ~ql 156 (279)
-|.
T Consensus 956 ~q~ 958 (1283)
T KOG1916|consen 956 TQQ 958 (1283)
T ss_pred HHH
Confidence 654
No 193
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=39.19 E-value=1.3e+02 Score=20.84 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=12.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 135 KDMEIENMNRKNRELIERIKQMAA 158 (279)
Q Consensus 135 Ke~Eie~~~kk~~eLeErl~ql~~ 158 (279)
.+.++..+...|..|...+..|..
T Consensus 30 le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 30 LEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344455555555555555555443
No 194
>PRK14143 heat shock protein GrpE; Provisional
Probab=39.13 E-value=1.2e+02 Score=28.06 Aligned_cols=24 Identities=13% Similarity=0.325 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 023682 91 KEEFDQYIKVQEEYLAKGVQDMKQR 115 (279)
Q Consensus 91 ~~EiD~~i~~q~e~lr~~l~e~r~r 115 (279)
..++.. +..+.+.++..+.+.+.+
T Consensus 66 ~~~~~~-l~~el~~l~~e~~elkd~ 89 (238)
T PRK14143 66 AARLAQ-LEQELESLKQELEELNSQ 89 (238)
T ss_pred hhHHHH-HHHHHHHHHHHHHHHHHH
Confidence 344543 344555666666654433
No 195
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=39.11 E-value=2e+02 Score=25.53 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 136 DMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 136 e~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
++-|+.+.++..+|+.++.++..|-+
T Consensus 145 ~~~i~~a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 145 QELIEEAKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555444
No 196
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=39.06 E-value=2.6e+02 Score=27.67 Aligned_cols=60 Identities=20% Similarity=0.458 Sum_probs=28.6
Q ss_pred HHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 94 FDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA 158 (279)
Q Consensus 94 iD~~i~~q~e--~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~ 158 (279)
||.++.+..+ ++...+++.|... +.+-..+....+.++.+.+.+..+..+|.++++.+..
T Consensus 29 vd~i~~ld~~~r~~~~~~~~l~~er-----N~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 90 (418)
T TIGR00414 29 LEKLIALDDERKKLLSEIEELQAKR-----NELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSA 90 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 6777777665 3444444333222 2333333333333332255555555666665555543
No 197
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.75 E-value=3e+02 Score=24.94 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=13.6
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 133 QEKDMEIENMNRKNRELIERIKQMAAEAQNWH 164 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq 164 (279)
+..+.|++.++..|..++..+.....|-..-+
T Consensus 59 ~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~ 90 (251)
T PF11932_consen 59 RQLEREIENLEVYNEQLERQVASQEQELASLE 90 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444443333
No 198
>PRK14158 heat shock protein GrpE; Provisional
Probab=38.67 E-value=1.3e+02 Score=26.94 Aligned_cols=10 Identities=0% Similarity=-0.286 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 023682 102 EEYLAKGVQD 111 (279)
Q Consensus 102 ~e~lr~~l~e 111 (279)
.+.+...+.+
T Consensus 49 l~~le~e~~e 58 (194)
T PRK14158 49 LAAKEAEAAA 58 (194)
T ss_pred HHHHHHHHHH
Confidence 3334433333
No 199
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=38.42 E-value=1.6e+02 Score=21.77 Aligned_cols=54 Identities=15% Similarity=0.292 Sum_probs=35.1
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 93 EFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA 158 (279)
Q Consensus 93 EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~ 158 (279)
.+..-++.+.+.....|+...=.+++.|+.+.+ ||..++....+|...+..+..
T Consensus 26 ~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~------------~I~~m~~~~~~l~~~l~~l~~ 79 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRKLVYENYRDFIEASD------------EISSMENDLSELRNLLSELQQ 79 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566677777777889999999988 555555555555555554443
No 200
>PRK14161 heat shock protein GrpE; Provisional
Probab=38.04 E-value=1.9e+02 Score=25.51 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 138 EIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 138 Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
+|+.+.+++.+|.+++.++.+|.+..++++.
T Consensus 27 ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ 57 (178)
T PRK14161 27 EITALKAEIEELKDKLIRTTAEIDNTRKRLE 57 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444433
No 201
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=37.92 E-value=6.3 Score=37.21 Aligned_cols=42 Identities=21% Similarity=0.485 Sum_probs=28.2
Q ss_pred ccccccc----cccceEEecCCCcccchhhHhcC----CCCCCCcccccceE
Q 023682 231 ICRACKA----KEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNASV 274 (279)
Q Consensus 231 ~C~iC~~----~~~~v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~~v 274 (279)
-|.+|.+ ....+..+||+|.-- ..|...+ -.||+|.. +...+
T Consensus 160 ncPic~e~l~~s~~~~~~~~CgH~~h-~~cf~e~~~~~y~CP~C~~-~~d~~ 209 (276)
T KOG1940|consen 160 NCPICKEYLFLSFEDAGVLKCGHYMH-SRCFEEMICEGYTCPICSK-PGDMS 209 (276)
T ss_pred CCchhHHHhccccccCCccCcccchH-HHHHHHHhccCCCCCcccc-hHHHH
Confidence 3888876 455677789999842 4444332 79999988 54433
No 202
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.71 E-value=21 Score=25.29 Aligned_cols=16 Identities=50% Similarity=1.362 Sum_probs=11.4
Q ss_pred cchhhHhc----CCCCCCCc
Q 023682 252 LCKDCDVL----VAVCPVCQ 267 (279)
Q Consensus 252 lC~~C~~~----l~~CPvCr 267 (279)
+|.+|+.. +..||.|.
T Consensus 31 FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 31 FCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp B-HHHHHTTTTTS-SSSTT-
T ss_pred cccCcChhhhccccCCcCCC
Confidence 89999876 68999995
No 203
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=37.45 E-value=13 Score=31.60 Aligned_cols=32 Identities=22% Similarity=0.471 Sum_probs=24.8
Q ss_pred ccccccccccc---cceEEecCCCcc-----cchhhHhcC
Q 023682 229 QMICRACKAKE---ASVLLMPCRHLC-----LCKDCDVLV 260 (279)
Q Consensus 229 ~~~C~iC~~~~---~~v~llPC~Hlc-----lC~~C~~~l 260 (279)
...|.||+++- ..||.+||+-.. +|..|..+-
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw 65 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRW 65 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHH
Confidence 56899999853 469999999442 799998764
No 204
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.41 E-value=14 Score=23.45 Aligned_cols=16 Identities=38% Similarity=0.524 Sum_probs=12.5
Q ss_pred CCCCCCCcccccceEE
Q 023682 260 VAVCPVCQFVKNASVL 275 (279)
Q Consensus 260 l~~CPvCr~~i~~~v~ 275 (279)
-..||+|..+...++.
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 4689999988877664
No 205
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=37.00 E-value=20 Score=34.41 Aligned_cols=42 Identities=17% Similarity=0.427 Sum_probs=28.1
Q ss_pred cccccccccccccceEEecCC----CcccchhhHhc----CCCCCCCccc
Q 023682 228 HQMICRACKAKEASVLLMPCR----HLCLCKDCDVL----VAVCPVCQFV 269 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~----HlclC~~C~~~----l~~CPvCr~~ 269 (279)
....|+||++.+..-++..-+ -+..|.-|... -..||.|...
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 235 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQS 235 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 456899999998644432211 12379999754 2799999874
No 206
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=36.87 E-value=4.6e+02 Score=26.48 Aligned_cols=39 Identities=26% Similarity=0.713 Sum_probs=28.9
Q ss_pred ccccccccc----cccceEEecCCCcccchhhHhc------CCCCCCCcc
Q 023682 229 QMICRACKA----KEASVLLMPCRHLCLCKDCDVL------VAVCPVCQF 268 (279)
Q Consensus 229 ~~~C~iC~~----~~~~v~llPC~HlclC~~C~~~------l~~CPvCr~ 268 (279)
...|-.|++ ++.+.=-+||-|. +=.-|... -+.||-||+
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHI-fH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHI-FHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHH-HHHHHHHHHHHhCCCCCCccHHH
Confidence 346778876 4556666899998 77778763 389999994
No 207
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=36.84 E-value=20 Score=28.91 Aligned_cols=44 Identities=25% Similarity=0.529 Sum_probs=31.1
Q ss_pred ccccccccccceEEecCCC------cccchhhHhcC--------CCCCCCcccccceE
Q 023682 231 ICRACKAKEASVLLMPCRH------LCLCKDCDVLV--------AVCPVCQFVKNASV 274 (279)
Q Consensus 231 ~C~iC~~~~~~v~llPC~H------lclC~~C~~~l--------~~CPvCr~~i~~~v 274 (279)
.|--|.+.-.+.-|.|=+| ..+|..|...+ ..||.|+++++-.-
T Consensus 37 aCy~CHdel~~Hpf~p~~~~~~~~~~iiCGvC~~~LT~~EY~~~~~Cp~C~spFNp~C 94 (105)
T COG4357 37 ACYHCHDELEDHPFEPWGLQEFNPKAIICGVCRKLLTRAEYGMCGSCPYCQSPFNPGC 94 (105)
T ss_pred hHHHHHhHHhcCCCccCChhhcCCccEEhhhhhhhhhHHHHhhcCCCCCcCCCCCccc
Confidence 4666777766777777664 35677786653 67999999998654
No 208
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=36.76 E-value=12 Score=26.05 Aligned_cols=10 Identities=30% Similarity=0.883 Sum_probs=4.2
Q ss_pred CCCCCccccc
Q 023682 262 VCPVCQFVKN 271 (279)
Q Consensus 262 ~CPvCr~~i~ 271 (279)
.||+|..+++
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 6777777654
No 209
>PRK14151 heat shock protein GrpE; Provisional
Probab=36.33 E-value=1.3e+02 Score=26.44 Aligned_cols=31 Identities=19% Similarity=0.251 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 138 EIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 138 Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
+|+.+.+++.+|++++.++.+|.+..++++.
T Consensus 28 ~i~~le~e~~el~d~~lR~~Ae~eN~rkR~~ 58 (176)
T PRK14151 28 RVQELEEQLAAAKDQSLRAAADLQNVRRRAE 58 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555554443
No 210
>PRK14154 heat shock protein GrpE; Provisional
Probab=36.28 E-value=1.2e+02 Score=27.53 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 023682 138 EIENMNRKNRE 148 (279)
Q Consensus 138 Eie~~~kk~~e 148 (279)
|.+|.+|+...
T Consensus 81 DfeNyRKR~~k 91 (208)
T PRK14154 81 EMDNLRKRIER 91 (208)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 211
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=36.27 E-value=15 Score=37.37 Aligned_cols=28 Identities=25% Similarity=0.743 Sum_probs=22.1
Q ss_pred cccccccccccccccceEEecCCCcc--cchhhHhc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLC--LCKDCDVL 259 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~Hlc--lC~~C~~~ 259 (279)
+.....|.||+++.+ |.|+- .|..|...
T Consensus 266 ~~~e~~CAVCgDnAa------CqHYGvRTCEGCKGF 295 (605)
T KOG4217|consen 266 LSAEGLCAVCGDNAA------CQHYGVRTCEGCKGF 295 (605)
T ss_pred CCccceeeecCChHH------hhhcCccccccchHH
Confidence 445678999999986 99986 48888654
No 212
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.19 E-value=10 Score=39.85 Aligned_cols=41 Identities=24% Similarity=0.641 Sum_probs=28.8
Q ss_pred cccccccccccc----ceEEecCCCcccchhhHhcC--CCCCCCccccc
Q 023682 229 QMICRACKAKEA----SVLLMPCRHLCLCKDCDVLV--AVCPVCQFVKN 271 (279)
Q Consensus 229 ~~~C~iC~~~~~----~v~llPC~HlclC~~C~~~l--~~CPvCr~~i~ 271 (279)
...|.||..... .=+++-|||. +|.-|...+ ..|| |...-+
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvsl~cght-ic~~c~~~lyn~scp-~~~De~ 57 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVSLQCGHT-ICGHCVQLLYNASCP-TKRDED 57 (861)
T ss_pred HhhchHHHHHHHHHhcCcccccccch-HHHHHHHhHhhccCC-CCcccc
Confidence 456888855433 3455679999 899999986 7899 554433
No 213
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=36.13 E-value=4.8e+02 Score=26.55 Aligned_cols=30 Identities=20% Similarity=0.118 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023682 143 NRKNRELIERIKQMAAEAQNWHYRAKYNES 172 (279)
Q Consensus 143 ~kk~~eLeErl~ql~~E~qaWq~~A~~nea 172 (279)
..++.+|..+++.|..-...|......+..
T Consensus 377 ~~~l~~~~~~~~~le~~~~~~~~~~~~~~~ 406 (582)
T PF09731_consen 377 LAKLAELNSRLKALEEALDARSEAEDENRR 406 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666777777766666665555543
No 214
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=36.07 E-value=86 Score=24.78 Aligned_cols=41 Identities=32% Similarity=0.246 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 121 LSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 121 l~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
+..-+...+.....|..+++++..++.+++....++..+..
T Consensus 64 l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~ 104 (109)
T PF03980_consen 64 LTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQ 104 (109)
T ss_pred CChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666677777778887777777777777665544
No 215
>PRK14147 heat shock protein GrpE; Provisional
Probab=36.06 E-value=1.3e+02 Score=26.41 Aligned_cols=14 Identities=21% Similarity=0.192 Sum_probs=6.8
Q ss_pred HhHHHHHHHHHHHH
Q 023682 100 VQEEYLAKGVQDMK 113 (279)
Q Consensus 100 ~q~e~lr~~l~e~r 113 (279)
.+.+.++..+.+..
T Consensus 25 ~~l~~l~~e~~elk 38 (172)
T PRK14147 25 AEVESLRSEIALVK 38 (172)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455555555443
No 216
>PRK14148 heat shock protein GrpE; Provisional
Probab=36.05 E-value=1.4e+02 Score=26.78 Aligned_cols=8 Identities=13% Similarity=0.181 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 023682 103 EYLAKGVQ 110 (279)
Q Consensus 103 e~lr~~l~ 110 (279)
+.++..+.
T Consensus 50 ~~l~~e~~ 57 (195)
T PRK14148 50 KELEDSCD 57 (195)
T ss_pred HHHHHHHH
Confidence 33333333
No 217
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=35.99 E-value=3.6e+02 Score=28.09 Aligned_cols=132 Identities=11% Similarity=0.133 Sum_probs=0.0
Q ss_pred ccccccccccccccCCCCCCC-CCCchhhhhhhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 50 RLSYDDDERNSSVTSASGSMT-AAPPIILSLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGL 128 (279)
Q Consensus 50 rl~~~~~~~~s~~~s~s~~~~-~~~~~~~~~~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~ 128 (279)
.|+|.|++.-...+....... -...+...+|=++ +++=..+++.|++-....+...-...+......-+..++...
T Consensus 149 ~~FfFDGE~I~~la~~~~~~~~l~~Ai~~LlGl~~---~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~ 225 (650)
T TIGR03185 149 DLFFFDGEKIEALANPDRLASLLKEAIEVLLGLDL---IDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKY 225 (650)
T ss_pred HHhcccHHHHHHHhccccchHHHHHHHHHHhCcHH---HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Q ss_pred HH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 129 AK---KLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 129 ~~---rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
.. .+.+.+.+++.+.++..++++.++. +...|+..-..-+.....+..++.+....
T Consensus 226 e~l~~~i~~l~~ele~a~~~l~~l~~~~~~---~GG~~~~~r~~Le~ei~~le~e~~e~~~~ 284 (650)
T TIGR03185 226 EDLAQEIAHLRNELEEAQRSLESLEKKFRS---EGGDLFEEREQLERQLKEIEAARKANRAQ 284 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcchHHHHHHHHHHHHHHHHHHHHHHHHH
No 218
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=35.93 E-value=3.2e+02 Score=24.34 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=33.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
.+++..+.+|..+.-.+..|++++.++..|...|...-.
T Consensus 93 ~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~ 131 (201)
T PF13851_consen 93 ARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFE 131 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999886543
No 219
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=35.63 E-value=1.4e+02 Score=33.54 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=17.9
Q ss_pred HHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIE-------NMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 131 rLreKe~Eie-------~~~kk~~eLeErl~ql~~E~qa 162 (279)
.+++++++++ .+..++++|++.+.++.++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (1123)
T PRK11448 171 LAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209 (1123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554 5556666666666666555443
No 220
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=35.63 E-value=6.1e+02 Score=27.55 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=13.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 023682 92 EEFDQYIKVQEEYLAKGVQDMKQR 115 (279)
Q Consensus 92 ~EiD~~i~~q~e~lr~~l~e~r~r 115 (279)
..+|.-|+-=..+||..-+|+=++
T Consensus 48 ~hld~aLkec~~qlr~~ree~eq~ 71 (769)
T PF05911_consen 48 SHLDGALKECMRQLRQVREEQEQK 71 (769)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHH
Confidence 345555555555666666555444
No 221
>PRK14162 heat shock protein GrpE; Provisional
Probab=35.58 E-value=1.5e+02 Score=26.55 Aligned_cols=19 Identities=11% Similarity=0.106 Sum_probs=8.0
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 023682 92 EEFDQYIKVQEEYLAKGVQD 111 (279)
Q Consensus 92 ~EiD~~i~~q~e~lr~~l~e 111 (279)
.|++.+ ....+.+...+.+
T Consensus 39 ~e~~~l-~~~l~~l~~e~~e 57 (194)
T PRK14162 39 NPVEDL-EKEIADLKAKNKD 57 (194)
T ss_pred hhHHHH-HHHHHHHHHHHHH
Confidence 444432 3334444444443
No 222
>PRK14164 heat shock protein GrpE; Provisional
Probab=35.35 E-value=1e+02 Score=28.08 Aligned_cols=13 Identities=0% Similarity=0.082 Sum_probs=6.4
Q ss_pred hHHHHHHHHHHHH
Q 023682 101 QEEYLAKGVQDMK 113 (279)
Q Consensus 101 q~e~lr~~l~e~r 113 (279)
+.+.|...+.|..
T Consensus 78 ~~~~le~el~el~ 90 (218)
T PRK14164 78 EASTVEAQLAERT 90 (218)
T ss_pred hHHHHHHHHHHHH
Confidence 3445555555543
No 223
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=35.06 E-value=19 Score=27.88 Aligned_cols=44 Identities=23% Similarity=0.664 Sum_probs=17.5
Q ss_pred cccccccccccc----cceEEecCCC--cccchhhHhc-----CCCCCCCccccc
Q 023682 228 HQMICRACKAKE----ASVLLMPCRH--LCLCKDCDVL-----VAVCPVCQFVKN 271 (279)
Q Consensus 228 ~~~~C~iC~~~~----~~v~llPC~H--lclC~~C~~~-----l~~CPvCr~~i~ 271 (279)
+...|.||++.- -.-+|.-|.. +.+|+.|..- ...||.|++...
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~yk 62 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYK 62 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B--
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcc
Confidence 456799998832 2335555653 2368888753 589999997654
No 224
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=35.06 E-value=3e+02 Score=23.81 Aligned_cols=28 Identities=11% Similarity=0.277 Sum_probs=17.2
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHHHHHHHH
Q 023682 81 DNVRTELDRQKEEFDQYIKVQEEYLAKGV 109 (279)
Q Consensus 81 ~~l~~~l~~q~~EiD~~i~~q~e~lr~~l 109 (279)
+.+++.-+.+..|+. .++..+++|....
T Consensus 39 e~~~~~n~~~~~e~~-~L~~d~e~L~~q~ 66 (158)
T PF09744_consen 39 ESLASRNQEHEVELE-LLREDNEQLETQY 66 (158)
T ss_pred HHHHHhhhhhhhHHH-HHHHHHHHHHHHH
Confidence 556666666677776 4455666665543
No 225
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=34.89 E-value=8.7 Score=37.07 Aligned_cols=46 Identities=28% Similarity=0.688 Sum_probs=35.4
Q ss_pred cccccccccccccc-eEEecCCCcccchhhHhc----CCCCCCCcccccceE
Q 023682 228 HQMICRACKAKEAS-VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASV 274 (279)
Q Consensus 228 ~~~~C~iC~~~~~~-v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 274 (279)
....|.+|..=-.+ +.+.-|=|- +|+.|--. ...||.|...|..+.
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t~ 64 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKTH 64 (331)
T ss_pred cceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCcc
Confidence 45679999886554 333469998 99999755 589999999998875
No 226
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.84 E-value=31 Score=32.39 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=30.6
Q ss_pred cccccccccc----cccceEEecCCCcccchhhHh---cCCCCCCCcccccceEEE
Q 023682 228 HQMICRACKA----KEASVLLMPCRHLCLCKDCDV---LVAVCPVCQFVKNASVLV 276 (279)
Q Consensus 228 ~~~~C~iC~~----~~~~v~llPC~HlclC~~C~~---~l~~CPvCr~~i~~~v~v 276 (279)
....|+|=+- ...-++|.+|||.- .+=+- ....|++|.++....-.|
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~--SerAlKeikas~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVF--SERALKEIKASVCHVCGAAYQEDDVI 163 (293)
T ss_pred ceeecccccceecceEEEEEEeccceec--cHHHHHHhhhccccccCCcccccCeE
Confidence 3456877543 45567889999972 22211 148999999988765444
No 227
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=34.82 E-value=16 Score=25.72 Aligned_cols=13 Identities=46% Similarity=0.800 Sum_probs=6.7
Q ss_pred CCCCCcccccceE
Q 023682 262 VCPVCQFVKNASV 274 (279)
Q Consensus 262 ~CPvCr~~i~~~v 274 (279)
.||+|..++..+.
T Consensus 36 ~CP~C~a~K~~F~ 48 (50)
T cd00730 36 VCPVCGAGKDDFE 48 (50)
T ss_pred CCCCCCCcHHHcE
Confidence 5555555554443
No 228
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=34.79 E-value=3.2e+02 Score=24.06 Aligned_cols=27 Identities=19% Similarity=0.487 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 136 DMEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 136 e~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
+.+|..+...+.+|+..+..+......
T Consensus 126 ~~~i~~L~~e~~~L~~~~~~l~~~~e~ 152 (189)
T PF10211_consen 126 EEEIEELEEEKEELEKQVQELKNKCEQ 152 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 229
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=33.88 E-value=2.6e+02 Score=28.57 Aligned_cols=6 Identities=17% Similarity=0.368 Sum_probs=2.4
Q ss_pred Cccccc
Q 023682 47 TGLRLS 52 (279)
Q Consensus 47 tglrl~ 52 (279)
.|+.+.
T Consensus 20 i~ik~~ 25 (472)
T TIGR03752 20 IGIKSF 25 (472)
T ss_pred hheeec
Confidence 344433
No 230
>PRK14153 heat shock protein GrpE; Provisional
Probab=33.74 E-value=1.6e+02 Score=26.43 Aligned_cols=15 Identities=13% Similarity=0.299 Sum_probs=7.3
Q ss_pred HhHHHHHHHHHHHHH
Q 023682 100 VQEEYLAKGVQDMKQ 114 (279)
Q Consensus 100 ~q~e~lr~~l~e~r~ 114 (279)
...+.++..+.+.+.
T Consensus 40 ~ei~~l~~e~~elkd 54 (194)
T PRK14153 40 SETEKCREEIESLKE 54 (194)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555554433
No 231
>PLN03188 kinesin-12 family protein; Provisional
Probab=33.58 E-value=5.4e+02 Score=29.62 Aligned_cols=87 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 91 KEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKK---------LQEKDMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 91 ~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~r---------LreKe~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
+.|+|. -+..+|+||..| +.-|+..-.|=.|+..++..- |.||-.+|....|+++|.-+.+++..+-+.
T Consensus 1071 r~eles-~r~l~Ekl~~EL-~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag 1148 (1320)
T PLN03188 1071 RTELDA-SRALAEKQKHEL-DTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAG 1148 (1320)
T ss_pred HHHHHH-HHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 023682 162 NWHYRAKYNESVVNLLKS 179 (279)
Q Consensus 162 aWq~~A~~nea~a~~Lr~ 179 (279)
.-=.-.+...+.|+.|.+
T Consensus 1149 ~kg~~~~f~~alaae~s~ 1166 (1320)
T PLN03188 1149 VRGAESKFINALAAEISA 1166 (1320)
T ss_pred cccchHHHHHHHHHHHHH
No 232
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=33.08 E-value=2.8e+02 Score=24.60 Aligned_cols=20 Identities=30% Similarity=0.428 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023682 140 ENMNRKNRELIERIKQMAAE 159 (279)
Q Consensus 140 e~~~kk~~eLeErl~ql~~E 159 (279)
+.+.+++.+|++.++...+|
T Consensus 156 ~e~~~~l~~l~~ei~~~~~e 175 (176)
T PF12999_consen 156 EELEKKLEELEKEIQAAKQE 175 (176)
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 44555666666666555543
No 233
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.94 E-value=4.4e+02 Score=25.10 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh------hHHHHHHHHHHHHHHHh
Q 023682 121 LSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA-AEAQNWHYRAKY------NESVVNLLKSNLQQAIS 186 (279)
Q Consensus 121 l~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~-~E~qaWq~~A~~------nea~a~~Lr~~Lqq~~~ 186 (279)
+..-|....+.|++.|.|-+.+.++..+|++....+. .|.+.|+..... .+..-.++.++++.+..
T Consensus 55 le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~ 127 (314)
T PF04111_consen 55 LEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASN 127 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666667777777777777777777777666664 334555544332 22233445555544443
No 234
>PF14645 Chibby: Chibby family
Probab=32.75 E-value=1.7e+02 Score=24.05 Aligned_cols=44 Identities=14% Similarity=0.125 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023682 136 DMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKS 179 (279)
Q Consensus 136 e~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~ 179 (279)
..+..+++++|..|+|...-|..+++..-+.-.+..+.+..+..
T Consensus 70 ~~~~~~l~~~n~~L~EENN~Lklk~elLlDMLtettae~~l~ek 113 (116)
T PF14645_consen 70 GEENQRLRKENQQLEEENNLLKLKIELLLDMLTETTAEAHLLEK 113 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788888888888888888888888777776665544443
No 235
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=32.58 E-value=2e+02 Score=21.10 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 023682 147 RELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQG 188 (279)
Q Consensus 147 ~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~~ 188 (279)
.+||.++.-...-....-.........++.|..++..+..+.
T Consensus 7 ~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 7 EELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333444455556666777777666554
No 236
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=32.44 E-value=25 Score=21.37 Aligned_cols=18 Identities=28% Similarity=0.903 Sum_probs=10.2
Q ss_pred chhhHhc----CCCCCCCcccc
Q 023682 253 CKDCDVL----VAVCPVCQFVK 270 (279)
Q Consensus 253 C~~C~~~----l~~CPvCr~~i 270 (279)
|.+|... ...||.|.-.+
T Consensus 3 CP~C~~~V~~~~~~Cp~CG~~F 24 (26)
T PF10571_consen 3 CPECGAEVPESAKFCPHCGYDF 24 (26)
T ss_pred CCCCcCCchhhcCcCCCCCCCC
Confidence 4555444 36777776544
No 237
>PRK14156 heat shock protein GrpE; Provisional
Probab=32.29 E-value=1.5e+02 Score=26.25 Aligned_cols=33 Identities=30% Similarity=0.300 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
.+|+.+.+++.+|++++.++.+|.+..+++...
T Consensus 34 ~~l~~l~~e~~elkd~~lR~~AEfeN~rKR~~r 66 (177)
T PRK14156 34 SELELANERADEFENKYLRAHAEMQNIQRRANE 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666555443
No 238
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=31.99 E-value=3.6e+02 Score=30.32 Aligned_cols=51 Identities=18% Similarity=0.175 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 134 EKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 134 eKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
||-+-+-+++-.+-.|+..+.++..|.+.|+..|......++-|.+-.+++
T Consensus 195 EK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~a 245 (1195)
T KOG4643|consen 195 EKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQA 245 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhh
Confidence 333444444555555666677888999999999888777666555544433
No 239
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=31.98 E-value=2.6e+02 Score=26.10 Aligned_cols=23 Identities=13% Similarity=0.306 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 023682 147 RELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 147 ~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
.|...|+..|..|+.+.+.....
T Consensus 218 ~e~~~r~~~leken~~lr~~v~~ 240 (269)
T KOG3119|consen 218 DEMAHRVAELEKENEALRTQVEQ 240 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555544444
No 240
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.98 E-value=2.8e+02 Score=22.61 Aligned_cols=40 Identities=18% Similarity=0.186 Sum_probs=28.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
..|.+--.+|+.++....+|.|....|..|++..+.+-.+
T Consensus 15 ~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~ 54 (110)
T PRK13169 15 QNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEE 54 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555567778888888888888888888876665553
No 241
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=31.96 E-value=2.2e+02 Score=25.29 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023682 140 ENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLL 177 (279)
Q Consensus 140 e~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~L 177 (279)
+.++.+|.+|++++..|. ..|+.|+.....+
T Consensus 50 ~~LR~~~~~L~~~l~~Li-------~~Ar~Ne~~~~~~ 80 (225)
T PF04340_consen 50 ERLRERNRQLEEQLEELI-------ENARENEAIFQRL 80 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 333444444444444443 4444555544433
No 242
>PLN02436 cellulose synthase A
Probab=31.79 E-value=33 Score=38.12 Aligned_cols=44 Identities=18% Similarity=0.560 Sum_probs=32.0
Q ss_pred cccccccccccc----cceEEecCCC--cccchhhHhc-----CCCCCCCccccc
Q 023682 228 HQMICRACKAKE----ASVLLMPCRH--LCLCKDCDVL-----VAVCPVCQFVKN 271 (279)
Q Consensus 228 ~~~~C~iC~~~~----~~v~llPC~H--lclC~~C~~~-----l~~CPvCr~~i~ 271 (279)
....|.||++.- -.=+|+.|.. +.+|..|..- -..||.|++...
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345899999852 2347778863 3489999854 489999998765
No 243
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=31.78 E-value=2.3e+02 Score=21.46 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHhHH
Q 023682 88 DRQKEEFDQYIKVQEE 103 (279)
Q Consensus 88 ~~q~~EiD~~i~~q~e 103 (279)
..-..|++..++...+
T Consensus 23 ~~~~~e~e~~~r~~l~ 38 (79)
T PF04380_consen 23 QGPREEIEKNIRARLQ 38 (79)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4445566666665533
No 244
>PRK14141 heat shock protein GrpE; Provisional
Probab=31.55 E-value=1.5e+02 Score=26.95 Aligned_cols=10 Identities=30% Similarity=0.800 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 023682 138 EIENMNRKNR 147 (279)
Q Consensus 138 Eie~~~kk~~ 147 (279)
|+++.+|+..
T Consensus 60 e~eN~RKR~~ 69 (209)
T PRK14141 60 EMENLRKRTQ 69 (209)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 245
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=31.50 E-value=5.7e+02 Score=26.01 Aligned_cols=8 Identities=13% Similarity=0.368 Sum_probs=3.1
Q ss_pred HHHHHHHh
Q 023682 94 FDQYIKVQ 101 (279)
Q Consensus 94 iD~~i~~q 101 (279)
|...|..+
T Consensus 278 l~~~L~~q 285 (582)
T PF09731_consen 278 LERALEEQ 285 (582)
T ss_pred HHHHHHHH
Confidence 33333333
No 246
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=31.13 E-value=3.3e+02 Score=23.10 Aligned_cols=49 Identities=12% Similarity=0.261 Sum_probs=32.4
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 023682 82 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHM--ASFLSAIEKGLAKKLQE 134 (279)
Q Consensus 82 ~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~--~~ll~ave~~~~~rLre 134 (279)
+++.-|.++..++|.= .+.|+..|.+.-+.+. -.++..+......+++.
T Consensus 22 ~i~~~L~k~~~~v~~~----i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~ 72 (146)
T PF08702_consen 22 GIQDFLDKYERDVDKD----IQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQ 72 (146)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccchHHH----HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccc
Confidence 5677788888887753 4567777777666665 44566666666666655
No 247
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=31.12 E-value=2.4e+02 Score=26.98 Aligned_cols=94 Identities=23% Similarity=0.323 Sum_probs=68.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023682 92 EEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNE 171 (279)
Q Consensus 92 ~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~ne 171 (279)
..|.. |-.|.|+|++.-. +|+=|+-+|=++++ +--++.-+...|+..+.|.|.-|-|....+..-.+...-.+...|
T Consensus 18 qKIqe-lE~QldkLkKE~q-QrQfQleSlEAaLq-KQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke 94 (307)
T PF10481_consen 18 QKIQE-LEQQLDKLKKERQ-QRQFQLESLEAALQ-KQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKE 94 (307)
T ss_pred HHHHH-HHHHHHHHHHHHH-HHHHhHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhH
Confidence 44544 3567899987542 35555555544443 223344555577888999999999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 023682 172 SVVNLLKSNLQQAISQG 188 (279)
Q Consensus 172 a~a~~Lr~~Lqq~~~~~ 188 (279)
..++.|..+|.....+.
T Consensus 95 ~qv~~lEgQl~s~Kkqi 111 (307)
T PF10481_consen 95 SQVNFLEGQLNSCKKQI 111 (307)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877653
No 248
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=31.03 E-value=27 Score=24.15 Aligned_cols=28 Identities=18% Similarity=0.618 Sum_probs=20.2
Q ss_pred ccccccccccceEEecCCCcccchhhHhcC
Q 023682 231 ICRACKAKEASVLLMPCRHLCLCKDCDVLV 260 (279)
Q Consensus 231 ~C~iC~~~~~~v~llPC~HlclC~~C~~~l 260 (279)
.|.+|......-+.+ .+++ +|.+|...+
T Consensus 1 ~CiiC~~~~~~GI~I-~~~f-IC~~CE~~i 28 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKF-ICSDCEKEI 28 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeE-ehHHHHHHh
Confidence 488998877753332 5676 899998875
No 249
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=30.81 E-value=2.2e+02 Score=31.96 Aligned_cols=43 Identities=19% Similarity=0.161 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 023682 122 SAIEKGLAKKLQEKDMEIENMNRK-NRELIERIKQMAAEAQNWH 164 (279)
Q Consensus 122 ~ave~~~~~rLreKe~Eie~~~kk-~~eLeErl~ql~~E~qaWq 164 (279)
...|..-..+|++|-+|.+++-++ ...|||+++.+..=+++-|
T Consensus 381 ~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 381 EQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 445666667788888888877555 4568888887765555433
No 250
>PRK14127 cell division protein GpsB; Provisional
Probab=30.70 E-value=1.6e+02 Score=24.02 Aligned_cols=10 Identities=20% Similarity=0.654 Sum_probs=6.8
Q ss_pred HHHHHHHHHH
Q 023682 91 KEEFDQYIKV 100 (279)
Q Consensus 91 ~~EiD~~i~~ 100 (279)
..|+|.||..
T Consensus 25 ~~EVD~FLd~ 34 (109)
T PRK14127 25 QDEVDKFLDD 34 (109)
T ss_pred HHHHHHHHHH
Confidence 3578888753
No 251
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=30.65 E-value=1.9e+02 Score=29.19 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023682 146 NRELIERIKQMAAEAQNWHYRAKYNESVVNLLKS 179 (279)
Q Consensus 146 ~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~ 179 (279)
.-|||--++=-.+|+..||.+|-+.-..|.+|+.
T Consensus 352 ~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~Lqr 385 (446)
T PF07227_consen 352 IEELESIVRIKQAEAKMFQLKADEARREAEGLQR 385 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555557888888888877777777653
No 252
>PRK14144 heat shock protein GrpE; Provisional
Probab=30.34 E-value=2e+02 Score=25.94 Aligned_cols=28 Identities=25% Similarity=0.208 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 139 IENMNRKNRELIERIKQMAAEAQNWHYR 166 (279)
Q Consensus 139 ie~~~kk~~eLeErl~ql~~E~qaWq~~ 166 (279)
|+.+.++..+|.+++.++.+|....+++
T Consensus 54 i~~le~e~~elkdk~lR~~AefeN~RKR 81 (199)
T PRK14144 54 LTLAEQKAHENWEKSVRALAELENVRRR 81 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 253
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=30.31 E-value=19 Score=21.19 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=6.1
Q ss_pred CCCCCCcccc
Q 023682 261 AVCPVCQFVK 270 (279)
Q Consensus 261 ~~CPvCr~~i 270 (279)
..||.|..++
T Consensus 14 ~fC~~CG~~l 23 (23)
T PF13240_consen 14 KFCPNCGTPL 23 (23)
T ss_pred cchhhhCCcC
Confidence 5677776543
No 254
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=30.28 E-value=3e+02 Score=28.07 Aligned_cols=39 Identities=8% Similarity=0.072 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023682 143 NRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 181 (279)
Q Consensus 143 ~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~L 181 (279)
+|++.+|+..+..+....+.-+.+.++-++....|+.++
T Consensus 82 EKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 82 QKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444445555555555554
No 255
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=30.13 E-value=7.2e+02 Score=27.09 Aligned_cols=83 Identities=25% Similarity=0.266 Sum_probs=42.1
Q ss_pred HHhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023682 99 KVQEEYLAKGVQDMKQR------HMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNES 172 (279)
Q Consensus 99 ~~q~e~lr~~l~e~r~r------h~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea 172 (279)
..+.+++-.+|+.+|++ |...|...+++...--++|--+-++++++...+++.--+++.+-..+=.+....+|.
T Consensus 169 ~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~d~E~ 248 (916)
T KOG0249|consen 169 EEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRTDIED 248 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34556666666666665 566666677655544445444445555555544444444443333333333333322
Q ss_pred HHHHHHHHHHHHH
Q 023682 173 VVNLLKSNLQQAI 185 (279)
Q Consensus 173 ~a~~Lr~~Lqq~~ 185 (279)
|+.+++|+-
T Consensus 249 ----Lr~e~~qL~ 257 (916)
T KOG0249|consen 249 ----LRGELDQLR 257 (916)
T ss_pred ----HHHHHHHHH
Confidence 455555554
No 256
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=30.00 E-value=3.2e+02 Score=22.57 Aligned_cols=37 Identities=5% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023682 138 EIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVV 174 (279)
Q Consensus 138 Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a 174 (279)
+...+.-.+.|....+.++..|.++|+.+-.+.....
T Consensus 81 ~~q~lq~~I~Ek~~eLERl~~E~~sL~kve~eQ~~~i 117 (120)
T PF14931_consen 81 QQQQLQALIAEKKMELERLRSEYESLQKVEQEQNELI 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444555577788888888877766654
No 257
>PRK14145 heat shock protein GrpE; Provisional
Probab=29.97 E-value=2.3e+02 Score=25.47 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=10.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Q 023682 92 EEFDQYIKVQEEYLAKGVQDMKQR 115 (279)
Q Consensus 92 ~EiD~~i~~q~e~lr~~l~e~r~r 115 (279)
.+++. +....+.++..+.+..-+
T Consensus 45 ~e~~~-l~~~l~~le~e~~el~d~ 67 (196)
T PRK14145 45 DEIEE-LKQKLQQKEVEAQEYLDI 67 (196)
T ss_pred hHHHH-HHHHHHHHHHHHHHHHHH
Confidence 34443 344455555555544333
No 258
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.90 E-value=2.4e+02 Score=29.83 Aligned_cols=50 Identities=16% Similarity=0.289 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-HhhhHHHHHHHHHHHHHH
Q 023682 135 KDMEIENMNRKNRELIERIKQMAAEAQ--NWHYR-AKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 135 Ke~Eie~~~kk~~eLeErl~ql~~E~q--aWq~~-A~~nea~a~~Lr~~Lqq~ 184 (279)
.+.+|+.+.+.+.+|+.++.++..+.. .|..+ ....+..++.|+.+|+.-
T Consensus 441 L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~ 493 (652)
T COG2433 441 LKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEK 493 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443332 22211 112334455555555443
No 259
>PRK14163 heat shock protein GrpE; Provisional
Probab=29.86 E-value=1.8e+02 Score=26.59 Aligned_cols=16 Identities=6% Similarity=0.160 Sum_probs=9.8
Q ss_pred HHHhHHHHHHHHHHHH
Q 023682 98 IKVQEEYLAKGVQDMK 113 (279)
Q Consensus 98 i~~q~e~lr~~l~e~r 113 (279)
+..+.+.|+..+.+.+
T Consensus 45 l~~~l~~l~~e~~el~ 60 (214)
T PRK14163 45 LTAQLDQVRTALGERT 60 (214)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455667777766654
No 260
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=29.83 E-value=4.8e+02 Score=24.59 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 023682 121 LSAIEKGLAKKLQEKDMEIENMNRKNRELI 150 (279)
Q Consensus 121 l~ave~~~~~rLreKe~Eie~~~kk~~eLe 150 (279)
+.+=|...-.++..|..|+++..|++.-|+
T Consensus 188 l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 188 LASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555667777777777777776654
No 261
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=29.38 E-value=32 Score=33.29 Aligned_cols=45 Identities=24% Similarity=0.582 Sum_probs=34.5
Q ss_pred ccccccccc----cccceEEecCCCcccchhhHhcC----CCCCCCcccccceE
Q 023682 229 QMICRACKA----KEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNASV 274 (279)
Q Consensus 229 ~~~C~iC~~----~~~~v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~~v 274 (279)
...|.+|.+ ....++=.||+|. +|-.|.... ..||.||.+....+
T Consensus 249 ~~s~p~~~~~~~~~d~~~lP~~~~~~-~~l~~~~t~~~~~~~~~~~rk~~~~~t 301 (327)
T KOG2068|consen 249 PPSCPICYEDLDLTDSNFLPCPCGFR-LCLFCHKTISDGDGRCPGCRKPYERNT 301 (327)
T ss_pred CCCCCCCCCccccccccccccccccc-chhhhhhcccccCCCCCccCCccccCc
Confidence 468999998 3345555778888 899998764 79999998776554
No 262
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.32 E-value=2.2e+02 Score=25.87 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
+++-.+++++.+.+..+.++...-+.|.....
T Consensus 162 ~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 162 EDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555566666666566555554444444333
No 263
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.08 E-value=2.4e+02 Score=26.68 Aligned_cols=49 Identities=22% Similarity=0.232 Sum_probs=27.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 185 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~ 185 (279)
++|-+||.+|-.-.|++.+|.-+ .|++ ..+-+.+..++..|....+.++
T Consensus 239 k~L~qkdq~ileKdkqisnLKad-----~e~~--~~~ek~Hke~v~qL~~k~~~~l 287 (305)
T KOG3990|consen 239 KLLHQKDQLILEKDKQISNLKAD-----KEYQ--KELEKKHKERVQQLQKKKEESL 287 (305)
T ss_pred HHHhhhHHHHHhhhhhhhccCcc-----hhHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 55777887777777777777655 2222 1222334444555555444443
No 264
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=29.07 E-value=2.4e+02 Score=20.94 Aligned_cols=32 Identities=13% Similarity=0.248 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 134 EKDMEIENMNRKNRELIERIKQMAAEAQNWHY 165 (279)
Q Consensus 134 eKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~ 165 (279)
..+.-|+.+-....+|+.-...|..+...|+.
T Consensus 4 ~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ 35 (65)
T TIGR02449 4 ALAAQVEHLLEYLERLKSENRLLRAQEKTWRE 35 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555554
No 265
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=28.71 E-value=3.5e+02 Score=22.61 Aligned_cols=60 Identities=15% Similarity=0.236 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 124 IEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 124 ve~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
-+..|+..||....||-.....|.....++..+..|--+||....- ...+..++++++..
T Consensus 34 eDDEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~----l~~lD~~V~~aY~K 93 (131)
T PF10198_consen 34 EDDEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRI----LDDLDKQVEQAYKK 93 (131)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3456677777777888888888888888888888998899877665 34567777777654
No 266
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=28.58 E-value=14 Score=35.47 Aligned_cols=42 Identities=29% Similarity=0.498 Sum_probs=27.2
Q ss_pred cccccccccccc---ceEEecCCCcccchhhHhc---------------------------CCCCCCCccccc
Q 023682 229 QMICRACKAKEA---SVLLMPCRHLCLCKDCDVL---------------------------VAVCPVCQFVKN 271 (279)
Q Consensus 229 ~~~C~iC~~~~~---~v~llPC~HlclC~~C~~~---------------------------l~~CPvCr~~i~ 271 (279)
.+.|+||+-..+ .++.-||.|+ +=..|-.+ -..|||||-.|.
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 345777765443 4778899999 43344322 157999998774
No 267
>PRK04023 DNA polymerase II large subunit; Validated
Probab=28.38 E-value=43 Score=37.08 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=34.0
Q ss_pred cccccccccccccceEEec-CCC----cccchhhHhcC--CCCCCCcccccceEEE
Q 023682 228 HQMICRACKAKEASVLLMP-CRH----LCLCKDCDVLV--AVCPVCQFVKNASVLV 276 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llP-C~H----lclC~~C~~~l--~~CPvCr~~i~~~v~v 276 (279)
..+.|.-|+..- .....| ||. ..+|..|.... ..||-|.........+
T Consensus 625 g~RfCpsCG~~t-~~frCP~CG~~Te~i~fCP~CG~~~~~y~CPKCG~El~~~s~~ 679 (1121)
T PRK04023 625 GRRKCPSCGKET-FYRRCPFCGTHTEPVYRCPRCGIEVEEDECEKCGREPTPYSKR 679 (1121)
T ss_pred cCccCCCCCCcC-CcccCCCCCCCCCcceeCccccCcCCCCcCCCCCCCCCccceE
Confidence 456899999874 334556 774 35799997764 6799998887765543
No 268
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=28.23 E-value=1.7e+02 Score=27.06 Aligned_cols=41 Identities=12% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 140 ENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 140 e~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
++-+.||.|||+.+++...+....+..... |++.--+++..
T Consensus 89 DRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~-------L~~DN~kLYEK 129 (248)
T PF08172_consen 89 DRFRQRNAELEEELRKQQQTISSLRREVES-------LRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
No 269
>PF08202 MIS13: Mis12-Mtw1 protein family; InterPro: IPR013218 The Mtw1 kinetochore complex contains at least four essential components including Mtw1, DSN1, NNF1 and NSL1. All proteins exhibit genetic and two-hybrid interactions and all stabley associate in solution. The function of the complex is unclear though it is involved in chromosome segregation [, ].; GO: 0005515 protein binding
Probab=28.14 E-value=85 Score=29.70 Aligned_cols=28 Identities=32% Similarity=0.389 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 142 MNRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 142 ~~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
..+.+++|++.|+++..|.++|....+.
T Consensus 162 N~~~i~~Lee~I~rLk~E~~~W~~~l~~ 189 (301)
T PF08202_consen 162 NEENIAELEEKIKRLKEERQAWAQLLKP 189 (301)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 3567889999999999999999988843
No 270
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=28.10 E-value=1.5e+02 Score=22.78 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=29.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHY 165 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~ 165 (279)
.|....|++++.++...|++.+.+|..|-..|..
T Consensus 37 ~~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~ 70 (97)
T PF04999_consen 37 SRQLFYELQQLEKEIDQLQEENERLRLEIATLSS 70 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5777788999999999999999999999887654
No 271
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=28.03 E-value=4.1e+02 Score=23.26 Aligned_cols=35 Identities=20% Similarity=0.332 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 123 AIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 123 ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
..+..|.=+|=+--.|||.+..++..||++++++.
T Consensus 111 kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~~e 145 (175)
T PRK13182 111 KADDVVSYQLLQHRREMEEMLERLQKLEARLKKLE 145 (175)
T ss_pred HHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444554555678888888888887777643
No 272
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=27.95 E-value=5.4e+02 Score=24.61 Aligned_cols=19 Identities=32% Similarity=0.281 Sum_probs=12.9
Q ss_pred HHhHHHHHHHHHHHHHHHH
Q 023682 99 KVQEEYLAKGVQDMKQRHM 117 (279)
Q Consensus 99 ~~q~e~lr~~l~e~r~rh~ 117 (279)
++|.|-|-++|+.+++.+-
T Consensus 38 QfQleSlEAaLqKQKqK~e 56 (307)
T PF10481_consen 38 QFQLESLEAALQKQKQKVE 56 (307)
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 4667778888876666543
No 273
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=27.75 E-value=4.1e+02 Score=23.15 Aligned_cols=24 Identities=17% Similarity=0.392 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 138 EIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 138 Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
|+..+.-.+..+|++++.+..|+.
T Consensus 152 E~~~L~l~~~~~e~k~~~l~~En~ 175 (194)
T PF08614_consen 152 ELQALQLQLNMLEEKLRKLEEENR 175 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444555555555544
No 274
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.75 E-value=5.3e+02 Score=24.44 Aligned_cols=53 Identities=11% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
|.+...||......+.++...+.++..+-..+.....+.++....+..++.++
T Consensus 211 L~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 211 LEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555666666666665555555555555555544
No 275
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=27.74 E-value=4.5e+02 Score=23.63 Aligned_cols=106 Identities=17% Similarity=0.241 Sum_probs=0.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023682 80 ADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQ------RHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 80 ~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~------rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl 153 (279)
+.-+...|...+.+|..+ +...+.|+..+.+.-. .+....+..--.....|+.....+|++.++++.+..+++
T Consensus 15 ~~C~~~~L~~~~~~l~~~-~~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l 93 (302)
T PF10186_consen 15 ANCVNNRLLELRSELQQL-KEENEELRRRIEEILESDSNGQLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERL 93 (302)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 154 KQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 154 ~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
..+..+.+.=+................+.++..
T Consensus 94 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 126 (302)
T PF10186_consen 94 EELRESLEQRRSRLSASQDLVESRQEQLEELQN 126 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 276
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=27.58 E-value=20 Score=35.22 Aligned_cols=39 Identities=28% Similarity=0.666 Sum_probs=24.4
Q ss_pred cccccccccccceEEecCCCcccchhhHhc-------------------------CCCCCCCcccccc
Q 023682 230 MICRACKAKEASVLLMPCRHLCLCKDCDVL-------------------------VAVCPVCQFVKNA 272 (279)
Q Consensus 230 ~~C~iC~~~~~~v~llPC~HlclC~~C~~~-------------------------l~~CPvCr~~i~~ 272 (279)
-.|.||+++.+..-. | +-.|..|... -+.||.||-.+--
T Consensus 16 ElCPVCGDkVSGYHY---G-LLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRFQKCL 79 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHY---G-LLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRFQKCL 79 (475)
T ss_pred cccccccCcccccee---e-eeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhHHHHh
Confidence 469999998775321 1 1146666432 1689999976543
No 277
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=27.52 E-value=3.5e+02 Score=22.30 Aligned_cols=42 Identities=24% Similarity=0.371 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023682 104 YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIK 154 (279)
Q Consensus 104 ~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ 154 (279)
.|+..+++...||...| .-|=||.++++.++--..++++-.+
T Consensus 72 ~L~~el~~l~~ry~t~L---------ellGEK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 72 ELEQELEELQQRYQTLL---------ELLGEKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHH---------HHhcchHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544322 3455677777777666666655444
No 278
>KOG4421 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.46 E-value=5.1e+02 Score=26.01 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 123 AIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAA 158 (279)
Q Consensus 123 ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~ 158 (279)
.-|.++-.-|++|+.|++.+.+.+.-||+.+..+..
T Consensus 577 ~~e~aaee~lk~~~del~s~~~~~h~ledeles~r~ 612 (637)
T KOG4421|consen 577 NCEEAAEEELKAKDDELASLGGALHMLEDELESTRI 612 (637)
T ss_pred HHHHhhHHHHHHhHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344555567999999999999999999998876653
No 279
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=27.41 E-value=5.7e+02 Score=24.65 Aligned_cols=64 Identities=23% Similarity=0.321 Sum_probs=46.1
Q ss_pred HHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 123 AIEKGLAKKL---QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 123 ave~~~~~rL---reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
.+....++|. ..-.+||.++-.++++|+.+++++..|+...+..-......=..|.++|..+..
T Consensus 217 ~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqd 283 (306)
T PF04849_consen 217 SLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQD 283 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445553 334589999999999999999999999998887766666655666666655543
No 280
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=27.35 E-value=2.6e+02 Score=23.98 Aligned_cols=16 Identities=19% Similarity=0.468 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023682 139 IENMNRKNRELIERIK 154 (279)
Q Consensus 139 ie~~~kk~~eLeErl~ 154 (279)
...+.+++.+|+.+++
T Consensus 56 q~~~e~RI~~L~~~L~ 71 (158)
T PRK05892 56 LARLDDRINELDRRLR 71 (158)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 281
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=27.35 E-value=1.4e+02 Score=23.16 Aligned_cols=33 Identities=21% Similarity=0.327 Sum_probs=16.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNW 163 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaW 163 (279)
++++.+++|+.++.+...++.++.-+.+.-..|
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~L 103 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQIAFL 103 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455555555555555555554444444
No 282
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.25 E-value=5.8e+02 Score=24.70 Aligned_cols=54 Identities=11% Similarity=0.228 Sum_probs=39.0
Q ss_pred HhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 133 QEKD---MEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 133 reKe---~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
++++ .++|++++++.+|+..++.+.-|-+.....--.-.-.|.-|..+|..++.
T Consensus 126 ~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~ 182 (319)
T PF09789_consen 126 HEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHELNYILN 182 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5555 57889999999999999988877766544444444566777777777663
No 283
>PRK14146 heat shock protein GrpE; Provisional
Probab=27.17 E-value=1.9e+02 Score=26.26 Aligned_cols=7 Identities=14% Similarity=0.202 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 023682 104 YLAKGVQ 110 (279)
Q Consensus 104 ~lr~~l~ 110 (279)
.++..+.
T Consensus 65 ~l~~e~~ 71 (215)
T PRK14146 65 NAKKEIE 71 (215)
T ss_pred HHHHHHH
Confidence 3433333
No 284
>PLN02678 seryl-tRNA synthetase
Probab=27.16 E-value=4.7e+02 Score=26.39 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=12.3
Q ss_pred HHHHHHHhHH--HHHHHHHHHH
Q 023682 94 FDQYIKVQEE--YLAKGVQDMK 113 (279)
Q Consensus 94 iD~~i~~q~e--~lr~~l~e~r 113 (279)
||+++.+..+ ++...+++.|
T Consensus 32 id~il~ld~~~r~l~~~~e~lr 53 (448)
T PLN02678 32 VDEVIALDKEWRQRQFELDSLR 53 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888766 3444444433
No 285
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=27.09 E-value=4.7e+02 Score=23.58 Aligned_cols=100 Identities=28% Similarity=0.359 Sum_probs=72.7
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 023682 78 SLADNVRTELDRQKEEFDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQ 155 (279)
Q Consensus 78 ~~~~~l~~~l~~q~~EiD~~i~~q~e--~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~q 155 (279)
.+=+++..+|.+-..=-|.|+++-.- .|+....+. --....+..++..+...+-+|+.+|.+...++..++-+...
T Consensus 48 ~lR~ElI~ELkqsKklydnYYkL~~KY~~LK~~~~~~--~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~e 125 (196)
T PF15272_consen 48 QLRQELINELKQSKKLYDNYYKLYSKYQELKKSSKQS--EDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKE 125 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888999988865 566644222 12235567888888899999999999999999999988888
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023682 156 MAAEAQNWHYRAKYNESVVNLLKSNLQ 182 (279)
Q Consensus 156 l~~E~qaWq~~A~~nea~a~~Lr~~Lq 182 (279)
+..+.+ .... ..|+.+.-|..+|.
T Consensus 126 l~~~r~--~e~~-~YesRI~dLE~~L~ 149 (196)
T PF15272_consen 126 LQNERE--RERI-AYESRIADLERQLN 149 (196)
T ss_pred HHhHHH--HHHH-HHHHHHHHHHHHHH
Confidence 887666 3333 34555656666654
No 286
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=26.72 E-value=2.2e+02 Score=19.65 Aligned_cols=37 Identities=19% Similarity=0.317 Sum_probs=23.0
Q ss_pred HHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 126 KGLAKKLQEKD-MEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 126 ~~~~~rLreKe-~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
..++++-|+|- ..++.+..++.+|+..+.+|..+...
T Consensus 13 r~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~ 50 (54)
T PF07716_consen 13 REAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666544 55666677777777777776655544
No 287
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=26.72 E-value=36 Score=33.08 Aligned_cols=30 Identities=30% Similarity=0.804 Sum_probs=26.3
Q ss_pred cccccccccccccceEEecCC--CcccchhhHh
Q 023682 228 HQMICRACKAKEASVLLMPCR--HLCLCKDCDV 258 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~--HlclC~~C~~ 258 (279)
....|..|-+....|+++||. |. .|.+|..
T Consensus 220 ~ni~C~~Ctdv~~~vlvf~Cns~Hv-tC~dCFr 251 (446)
T KOG0006|consen 220 RNITCITCTDVRSPVLVFQCNSRHV-TCLDCFR 251 (446)
T ss_pred ccceeEEecCCccceEEEecCCcee-ehHHhhh
Confidence 345799999999999999999 87 8999876
No 288
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=26.40 E-value=7.1e+02 Score=25.47 Aligned_cols=9 Identities=0% Similarity=0.121 Sum_probs=4.1
Q ss_pred cceEEecCC
Q 023682 240 ASVLLMPCR 248 (279)
Q Consensus 240 ~~v~llPC~ 248 (279)
+.+|++.|.
T Consensus 244 p~~v~ls~f 252 (514)
T TIGR03319 244 PEAVILSGF 252 (514)
T ss_pred CCeEEecCC
Confidence 344444553
No 289
>PF14738 PaaSYMP: Solute carrier (proton/amino acid symporter), TRAMD3 or PAT1
Probab=26.22 E-value=4.2e+02 Score=22.79 Aligned_cols=55 Identities=24% Similarity=0.313 Sum_probs=37.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 023682 92 EEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKN 146 (279)
Q Consensus 92 ~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~ 146 (279)
.||+.+=....+-|+..|.+.-+.+-.....-+|....++..+|+.-|.++.++.
T Consensus 94 ~eI~~lQe~RLell~~~l~~RE~~~~~~~~~Rle~~~~~~~~~k~~~i~ki~~~~ 148 (154)
T PF14738_consen 94 EEIQELQERRLELLKKMLQEREKEQEEANEQRLERLWQKKQKEKERKIEKIEKER 148 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555544444555666676666666667777788887888888887777776654
No 290
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=26.13 E-value=8.5e+02 Score=26.28 Aligned_cols=13 Identities=23% Similarity=0.557 Sum_probs=7.9
Q ss_pred HhhHHHHHHHHHH
Q 023682 87 LDRQKEEFDQYIK 99 (279)
Q Consensus 87 l~~q~~EiD~~i~ 99 (279)
+.....+++.+|.
T Consensus 511 ~~~~~~~~~~li~ 523 (782)
T PRK00409 511 IGEDKEKLNELIA 523 (782)
T ss_pred HhhhhhHHHHHHH
Confidence 3455567777765
No 291
>PRK01343 zinc-binding protein; Provisional
Probab=26.12 E-value=32 Score=25.01 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=5.6
Q ss_pred CCCCCCccccc
Q 023682 261 AVCPVCQFVKN 271 (279)
Q Consensus 261 ~~CPvCr~~i~ 271 (279)
..||+|+.++.
T Consensus 10 ~~CP~C~k~~~ 20 (57)
T PRK01343 10 RPCPECGKPST 20 (57)
T ss_pred CcCCCCCCcCc
Confidence 34555555543
No 292
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.03 E-value=1e+03 Score=27.28 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=11.8
Q ss_pred HHHhhHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNREL 149 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eL 149 (279)
+|+++++.|+++.++.-++
T Consensus 859 ~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 859 RLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666665
No 293
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=25.94 E-value=33 Score=39.79 Aligned_cols=47 Identities=23% Similarity=0.581 Sum_probs=32.9
Q ss_pred ccccccccccccc---cceEEecCCCcccchhhHhc--------------CCCCCCCcccccceE
Q 023682 227 NHQMICRACKAKE---ASVLLMPCRHLCLCKDCDVL--------------VAVCPVCQFVKNASV 274 (279)
Q Consensus 227 ~~~~~C~iC~~~~---~~v~llPC~HlclC~~C~~~--------------l~~CPvCr~~i~~~v 274 (279)
....+|.||+... +-.+-|-|+|. +=-.|... .-.||+|..+|+..+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~ 3547 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIV 3547 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHH
Confidence 3456899999854 34566789998 44444332 268999999998654
No 294
>PRK12704 phosphodiesterase; Provisional
Probab=25.90 E-value=7.3e+02 Score=25.43 Aligned_cols=8 Identities=0% Similarity=0.268 Sum_probs=3.4
Q ss_pred cceEEecC
Q 023682 240 ASVLLMPC 247 (279)
Q Consensus 240 ~~v~llPC 247 (279)
+.++++.|
T Consensus 250 p~~v~ls~ 257 (520)
T PRK12704 250 PEAVILSG 257 (520)
T ss_pred CCeEEEec
Confidence 34444444
No 295
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.87 E-value=6.4e+02 Score=26.49 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023682 106 AKGVQDMKQRHMASFLSAIEKGLAKKL--------QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLL 177 (279)
Q Consensus 106 r~~l~e~r~rh~~~ll~ave~~~~~rL--------reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~L 177 (279)
++.+--.-..|++.. +| ....|| ||+-+||++-+|.+..|.|.+.++..+--.-..--..-...+.+|
T Consensus 296 ~~~~~a~~~~h~r~~---~e-r~IerLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassL 371 (654)
T KOG4809|consen 296 KANLSAHEMAHMRMK---VE-RIIERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSL 371 (654)
T ss_pred HHHHhHHHHHhhhch---HH-HHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHH
Q 023682 178 KSNL 181 (279)
Q Consensus 178 r~~L 181 (279)
.+..
T Consensus 372 as~g 375 (654)
T KOG4809|consen 372 ASAG 375 (654)
T ss_pred HHHh
No 296
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=25.81 E-value=1.4e+02 Score=22.88 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 139 IENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 139 ie~~~kk~~eLeErl~ql~~E~qa 162 (279)
|..+.+.|+.|+++++.+.+|-+.
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~ 25 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQ 25 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888777766553
No 297
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=25.77 E-value=3.4e+02 Score=21.57 Aligned_cols=9 Identities=33% Similarity=0.549 Sum_probs=4.0
Q ss_pred hhHHHHHHH
Q 023682 134 EKDMEIENM 142 (279)
Q Consensus 134 eKe~Eie~~ 142 (279)
.+.++++.+
T Consensus 32 a~~~~~~~l 40 (106)
T PF10805_consen 32 AKREDIEKL 40 (106)
T ss_pred ccHHHHHHH
Confidence 344444444
No 298
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=25.65 E-value=29 Score=34.33 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=28.9
Q ss_pred ccccccccc----ccccccceEEecCCCcccchhhHhcC-------CCCCCCcccc
Q 023682 226 RNHQMICRA----CKAKEASVLLMPCRHLCLCKDCDVLV-------AVCPVCQFVK 270 (279)
Q Consensus 226 ~~~~~~C~i----C~~~~~~v~llPC~HlclC~~C~~~l-------~~CPvCr~~i 270 (279)
......|+| |-+...-+-| +|||. +|++=..++ -+||+|....
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L-~CGHV-ISkdAlnrLS~ng~~sfKCPYCP~e~ 384 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMML-ICGHV-ISKDALNRLSKNGSQSFKCPYCPVEQ 384 (394)
T ss_pred ccceeecccchhhccCCCCCeee-eccce-ecHHHHHHHhhCCCeeeeCCCCCccc
Confidence 345678998 4444444444 89998 788766554 4899997543
No 299
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=25.33 E-value=31 Score=38.11 Aligned_cols=45 Identities=16% Similarity=0.345 Sum_probs=24.9
Q ss_pred cccccccccccccc--ce-----EEecCCCcccchhhH-----hc-CCCCCCCcccccc
Q 023682 227 NHQMICRACKAKEA--SV-----LLMPCRHLCLCKDCD-----VL-VAVCPVCQFVKNA 272 (279)
Q Consensus 227 ~~~~~C~iC~~~~~--~v-----~llPC~HlclC~~C~-----~~-l~~CPvCr~~i~~ 272 (279)
.....|.||+.=-. +- ..-.|+|- +=..|- .. -..||+||..|+.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCcccccccc
Confidence 45678999997211 11 11134443 222332 11 3899999988764
No 300
>PLN02320 seryl-tRNA synthetase
Probab=25.31 E-value=4.6e+02 Score=26.93 Aligned_cols=11 Identities=9% Similarity=0.350 Sum_probs=7.2
Q ss_pred HHHHHHHHhHH
Q 023682 93 EFDQYIKVQEE 103 (279)
Q Consensus 93 EiD~~i~~q~e 103 (279)
.||.++.+..+
T Consensus 91 ~vd~l~~ld~~ 101 (502)
T PLN02320 91 NLELVLELYEN 101 (502)
T ss_pred CHHHHHHHHHH
Confidence 37777776654
No 301
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=25.17 E-value=7.6e+02 Score=25.39 Aligned_cols=58 Identities=26% Similarity=0.352 Sum_probs=36.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHH-----------HHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQ----MAAEA-----------QNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~q----l~~E~-----------qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
+-|-+||+||+++...--+||..... |..|- ..+|+.-++|.+.-..|++.|+.++++
T Consensus 453 k~LskKeeeverLQ~lkgelEkat~SALdlLkrEKe~~EqefLslqeEfQk~ekenl~ERqkLKs~leKLvaq 525 (527)
T PF15066_consen 453 KTLSKKEEEVERLQQLKGELEKATTSALDLLKREKETREQEFLSLQEEFQKHEKENLEERQKLKSRLEKLVAQ 525 (527)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 55889999999998888888854321 11111 124444555555556677777766654
No 302
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=25.11 E-value=6e+02 Score=24.16 Aligned_cols=64 Identities=14% Similarity=0.204 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 89 RQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWH 164 (279)
Q Consensus 89 ~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq 164 (279)
+-+.++..-++.+..+||-.|.| .|--.+.+ | .+.|.+|..++-+|..|+-++.+|.+|.....
T Consensus 16 ~ywk~l~~~ykq~f~~~reEl~E-FQegSrE~----E-------aelesqL~q~etrnrdl~t~nqrl~~E~e~~K 79 (333)
T KOG1853|consen 16 QYWKLLHHEYKQHFLQMREELNE-FQEGSREI----E-------AELESQLDQLETRNRDLETRNQRLTTEQERNK 79 (333)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHH-HhhhhHHH----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667777778888888877765 33333332 2 34567777888888888888888877765544
No 303
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=24.99 E-value=6.6e+02 Score=24.62 Aligned_cols=34 Identities=12% Similarity=0.388 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 023682 113 KQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKN 146 (279)
Q Consensus 113 r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~ 146 (279)
.+.+...+-..+...+..+|..+...+..+..++
T Consensus 310 ~~q~L~~l~~rL~~a~~~~L~~~~~~L~~l~~rL 343 (438)
T PRK00286 310 QQQRLDRLQQRLQRALERRLRLAKQRLERLSQRL 343 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666677777777888877777765543
No 304
>PRK02224 chromosome segregation protein; Provisional
Probab=24.95 E-value=8.7e+02 Score=25.95 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=31.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNL 176 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~ 176 (279)
+-.+.+.++....+..+|++.+..+..+.+.|...+.+.+.....
T Consensus 525 ~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~ 569 (880)
T PRK02224 525 IAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEE 569 (880)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 334456677777788888888888888888888766654443333
No 305
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=24.53 E-value=1.9e+02 Score=23.26 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023682 139 IENMNRKNRELIERIKQMAAEAQNWHYRAKYN 170 (279)
Q Consensus 139 ie~~~kk~~eLeErl~ql~~E~qaWq~~A~~n 170 (279)
+......+.+|+..++++.+|+......+..-
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~diLKKa~~~~ 104 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMENELLKEAVEYG 104 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33455556777777788889988776666553
No 306
>PF08654 DASH_Dad2: DASH complex subunit Dad2; InterPro: IPR013963 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=24.32 E-value=3.8e+02 Score=21.55 Aligned_cols=16 Identities=25% Similarity=0.545 Sum_probs=9.7
Q ss_pred HHHHHhhHHHHHHHHH
Q 023682 129 AKKLQEKDMEIENMNR 144 (279)
Q Consensus 129 ~~rLreKe~Eie~~~k 144 (279)
..|+-+|..|++.+.+
T Consensus 3 ~~ri~eKk~ELe~L~~ 18 (103)
T PF08654_consen 3 QARIAEKKAELEALKQ 18 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566677777666543
No 307
>PRK09039 hypothetical protein; Validated
Probab=24.28 E-value=6.5e+02 Score=24.24 Aligned_cols=46 Identities=9% Similarity=0.075 Sum_probs=25.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLL 177 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~L 177 (279)
+.-...||+.++++++.|+..|.-+......-+..-.+.+...+.+
T Consensus 139 V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 139 VELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456666666666666666666655555554444444444333
No 308
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=24.11 E-value=4.7e+02 Score=25.00 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=22.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
|.+.+.+++....++.++++.+..+..+.+.-......-+..+......|+.+
T Consensus 230 l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA 282 (344)
T PF12777_consen 230 LEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERA 282 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccH
Confidence 33444444444444444444444444444443333333333333333344433
No 309
>KOG2211 consensus Predicted Golgi transport complex 1 protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.08 E-value=9.3e+02 Score=26.02 Aligned_cols=48 Identities=27% Similarity=0.276 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHH
Q 023682 89 RQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEK----GLAKKLQEKDMEI 139 (279)
Q Consensus 89 ~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~----~~~~rLreKe~Ei 139 (279)
.|-+++.+=|+.+.++|+..+ ++||...|--+-+. .+.+-|+.|-.+|
T Consensus 75 ~q~~~L~q~lr~ldrqLh~qv---~~Rh~allaQat~~~~~d~~l~sl~~~v~~l 126 (797)
T KOG2211|consen 75 TQCDDLTQKLRELDRQLHAQV---LKRHMALLAQATEELFEDLELRSLLVKVAEL 126 (797)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 344455555666666666544 77888766655443 2333344444433
No 310
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=24.01 E-value=4.6e+02 Score=22.38 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=20.8
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023682 133 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 181 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~L 181 (279)
+.+.+++..+.....++.+.++.+..+.+.-+..+.........+..++
T Consensus 126 ~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (191)
T PF04156_consen 126 KSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENL 174 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444333333333444333333333333
No 311
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=23.93 E-value=8.4e+02 Score=25.44 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023682 116 HMASFLSAIEKGL---AKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 182 (279)
Q Consensus 116 h~~~ll~ave~~~---~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lq 182 (279)
++...++.+|... -++.+.-++|+.++++.|.-|...|..+..+-++=.-.=...+..+..|.-.|+
T Consensus 145 ~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 145 DYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3455556665544 355677789999999999999998888887666544444445555555554443
No 312
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=23.86 E-value=1.2e+03 Score=27.16 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=22.0
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023682 133 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNL 176 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~ 176 (279)
...|.-+.++..++.+|+-++..|..+..---..|++.+-+|.+
T Consensus 1608 ~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~s 1651 (1758)
T KOG0994|consen 1608 AAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGS 1651 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444445555566666666555555444444444444444433
No 313
>PF08549 SWI-SNF_Ssr4: Fungal domain of unknown function (DUF1750); InterPro: IPR013859 This is a fungal protein of unknown function.
Probab=23.83 E-value=1.6e+02 Score=31.31 Aligned_cols=27 Identities=30% Similarity=0.546 Sum_probs=13.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023682 128 LAKKLQEKDMEIENMNRKNRELIERIK 154 (279)
Q Consensus 128 ~~~rLreKe~Eie~~~kk~~eLeErl~ 154 (279)
|.+++.+-.+|||+|+++.+..-++++
T Consensus 369 V~~~ia~~~AEIekmK~~Hak~m~k~k 395 (669)
T PF08549_consen 369 VAKKIADMNAEIEKMKARHAKRMAKFK 395 (669)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555554444433
No 314
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=23.77 E-value=43 Score=20.20 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=7.9
Q ss_pred CCCCCCcccc
Q 023682 261 AVCPVCQFVK 270 (279)
Q Consensus 261 ~~CPvCr~~i 270 (279)
-.||+|...+
T Consensus 2 v~CPiC~~~v 11 (26)
T smart00734 2 VQCPVCFREV 11 (26)
T ss_pred CcCCCCcCcc
Confidence 3699998776
No 315
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.58 E-value=4.8e+02 Score=22.51 Aligned_cols=14 Identities=21% Similarity=0.287 Sum_probs=6.1
Q ss_pred hHHHHHHHHHHHHH
Q 023682 170 NESVVNLLKSNLQQ 183 (279)
Q Consensus 170 nea~a~~Lr~~Lqq 183 (279)
.+.-+++|+.|.+.
T Consensus 173 ~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 173 KEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334445544443
No 316
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=23.57 E-value=5.5e+02 Score=23.14 Aligned_cols=79 Identities=16% Similarity=0.301 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023682 102 EEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNL 181 (279)
Q Consensus 102 ~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~L 181 (279)
+-+|-..+.+.++ +++++--+++.+ +.-++|++.++--...|||.-++|.+.+.-..+-.+.-.+.+..|..+.
T Consensus 38 na~L~~e~~~L~~-q~~s~Qqal~~a-----K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen 111 (193)
T PF14662_consen 38 NAQLAEEITDLRK-QLKSLQQALQKA-----KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEEN 111 (193)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHh
Q 023682 182 QQAIS 186 (279)
Q Consensus 182 qq~~~ 186 (279)
..+..
T Consensus 112 ~kl~~ 116 (193)
T PF14662_consen 112 GKLLA 116 (193)
T ss_pred hHHHH
No 317
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=23.46 E-value=3.6e+02 Score=20.96 Aligned_cols=85 Identities=19% Similarity=0.243 Sum_probs=41.8
Q ss_pred HHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH
Q 023682 97 YIKVQEEYLAKGVQDMKQRH-MASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA----------AEAQNWHY 165 (279)
Q Consensus 97 ~i~~q~e~lr~~l~e~r~rh-~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~----------~E~qaWq~ 165 (279)
||+..-|.++..+. +|+ ....|..+-.. -...|+...+++.++.+-.++-..+.++. .|...+..
T Consensus 6 ~ir~n~e~v~~~l~---~R~~~~~~vd~i~~l-d~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~ 81 (108)
T PF02403_consen 6 LIRENPEEVRENLK---KRGGDEEDVDEIIEL-DQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKE 81 (108)
T ss_dssp HHHHHHHHHHHHHH---HTTCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHH---HcCCCHhhHHHHHHH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 56667777777663 222 22333322211 12335555555555555555554444443 35555555
Q ss_pred HHhhhHHHHHHHHHHHHHHH
Q 023682 166 RAKYNESVVNLLKSNLQQAI 185 (279)
Q Consensus 166 ~A~~nea~a~~Lr~~Lqq~~ 185 (279)
....-+.....+..+++.++
T Consensus 82 ~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 82 EIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555444
No 318
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=23.39 E-value=3.4e+02 Score=21.91 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=36.2
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023682 127 GLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 185 (279)
Q Consensus 127 ~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~ 185 (279)
.+-.+|.+-++.|..+.....+|+..+..+..||...+- +|+. ||..|.+..
T Consensus 5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~---EN~~----Lr~~l~~~~ 56 (107)
T PF06156_consen 5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRI---ENEH----LRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHh
Confidence 345667788888888888888888888888888876443 3322 555555443
No 319
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=23.36 E-value=6e+02 Score=23.54 Aligned_cols=34 Identities=24% Similarity=0.654 Sum_probs=19.6
Q ss_pred cccccccccccccceEEecCCCcccchhhHhcCCCCCCCcc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQF 268 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~ 268 (279)
.+..|..|+-. +|=+|+..=.. ...+-.||.|..
T Consensus 196 ~g~~C~GC~m~------l~~~~~~~V~~-~d~iv~CP~CgR 229 (239)
T COG1579 196 EGRVCGGCHMK------LPSQTLSKVRK-KDEIVFCPYCGR 229 (239)
T ss_pred cCCcccCCeee------ecHHHHHHHhc-CCCCccCCccch
Confidence 55678888643 34455422222 344678888865
No 320
>COG5484 Uncharacterized conserved protein [Function unknown]
Probab=23.31 E-value=6.4e+02 Score=23.87 Aligned_cols=127 Identities=17% Similarity=0.116 Sum_probs=62.5
Q ss_pred ccccccccccCCCCCCCccccccccccccccccCCCCCCCCCCchhhhhhhHHHHHHhhHHHHHHHHHHHhHHHHHHHHH
Q 023682 31 DEADRSASILNPNPVSTGLRLSYDDDERNSSVTSASGSMTAAPPIILSLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQ 110 (279)
Q Consensus 31 ~~~~~~~~~~~~~~vstglrl~~~~~~~~s~~~s~s~~~~~~~~~~~~~~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~ 110 (279)
++++..+-++|||+|.||.+=-|+-+.. |..+ .....+.++++..+..|-+ -+.+||.+.-+
T Consensus 83 gn~gG~ap~gN~na~t~G~fskl~pe~~-------se~e---q~i~~~~~~d~i~~~~qi~--y~aiiR~rkiM------ 144 (279)
T COG5484 83 GNNGGNAPKGNQNAVTHGEFSKLLPEET-------SEIE---QTIYESSPRDLIWDQIQIQ--YAAIIRARKIM------ 144 (279)
T ss_pred ccCCCCCCCCCccccccCchhhcChhhh-------hHHH---HHHHhcCccchhHHHHHHH--HHHHHHHHHHH------
Confidence 3444466788999999998777764421 1000 0111222333433322222 22255544322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHH-HHHHHhhhHHHHHHH
Q 023682 111 DMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI---KQMAAEAQN-WHYRAKYNESVVNLL 177 (279)
Q Consensus 111 e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl---~ql~~E~qa-Wq~~A~~nea~a~~L 177 (279)
.+..-...-+++.|..+-+.++.+|- |-..+.+-.-+-+.. ..-..+.-+ |-+.+..+++.-..+
T Consensus 145 -~~~~~~e~~~s~~E~~i~k~~~~~e~-i~e~k~kk~v~~~~~~v~~e~~e~~~~K~D~~~~~~~a~~r~~ 213 (279)
T COG5484 145 -KVSNIGETWYSAREAFIDKLTTKQEM-IKELKGKKSVLSEYEEVEVEEAEGVFAKWDRMLLLENAQTRAM 213 (279)
T ss_pred -HHHhhhhhhhhHHHHHHHHhhhhhhh-hhhhhccceeeeeehhhhhHHHhhhhhccchhhchhHHHHHHH
Confidence 22222344567788777777777776 444444433222222 222233334 777777777754433
No 321
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=23.17 E-value=1.1e+03 Score=26.54 Aligned_cols=48 Identities=21% Similarity=0.223 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQN-------WHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qa-------Wq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
+=++.+.-+|.+|||+++.|..|... -..++..|.....-|+.+|+++
T Consensus 448 ~MV~qLtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~DLreEld~~ 502 (1243)
T KOG0971|consen 448 EMVEQLTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELELDLREELDMA 502 (1243)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666666666666655444 4456666666667777777776
No 322
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=22.67 E-value=2.3e+02 Score=30.63 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=38.9
Q ss_pred hhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 80 ADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEK 135 (279)
Q Consensus 80 ~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreK 135 (279)
.+-+-.-|+..+.-..|-.+++.|+++.+|-+.-|-++|-+|.--|..-.+.=|+|
T Consensus 570 EQHVEnvlksyqqr~~Rk~QLEkEM~kagLpd~~q~qMrkmL~QKESnYiRLkRaK 625 (1034)
T KOG0608|consen 570 EQHVENVLKSYQQREKRKKQLEKEMVKAGLPDIMQNQMRKMLQQKESNYIRLKRAK 625 (1034)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhhhHHHHHHhh
Confidence 44445555656666777788888888888888888888877776665555444443
No 323
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=22.67 E-value=2.8e+02 Score=28.89 Aligned_cols=86 Identities=12% Similarity=0.125 Sum_probs=44.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Q 023682 96 QYIKVQEEYLAKGVQDMKQRHM---ASFLSAIEKGLAKKLQEKDMEIE-NMNRKNRELIERIKQMAAEAQNWHYRAK--- 168 (279)
Q Consensus 96 ~~i~~q~e~lr~~l~e~r~rh~---~~ll~ave~~~~~rLreKe~Eie-~~~kk~~eLeErl~ql~~E~qaWq~~A~--- 168 (279)
+|+-+++..-|..-...+...+ |.|..-|| .|.+|+|+.|++|. ++-+-.-|- -..|.+.|+...+
T Consensus 493 qY~aI~S~eqr~~Yk~dF~~eY~EYreLharve-~vs~rF~~Lea~L~srls~gS~ey------~~i~~qI~qEYeki~~ 565 (604)
T KOG4796|consen 493 QYGAISSLEQRQRYKKDFEAEYDEYRELHARVE-TVSRRFRQLEAQLKSRLSPGSPEY------KQIEKQILQEYEKIRK 565 (604)
T ss_pred hccccccHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHHHHhccCCCCCcH------HHHHHHHHHHHHHhhc
Confidence 4555665555554444444443 44444454 34556666666665 222222111 1234445554443
Q ss_pred -----hhHHHHHHHHHHHHHHHhcC
Q 023682 169 -----YNESVVNLLKSNLQQAISQG 188 (279)
Q Consensus 169 -----~nea~a~~Lr~~Lqq~~~~~ 188 (279)
+....-..|++.|.++..+.
T Consensus 566 dp~y~eeK~RceYLhsKLaHIK~lI 590 (604)
T KOG4796|consen 566 DPNYMEEKQRCEYLHSKLAHIKTLI 590 (604)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456688999998887653
No 324
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=22.64 E-value=7.4e+02 Score=26.71 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=6.0
Q ss_pred hHHHHHHHHHH
Q 023682 89 RQKEEFDQYIK 99 (279)
Q Consensus 89 ~q~~EiD~~i~ 99 (279)
....+++.+|.
T Consensus 508 ~~~~~~~~li~ 518 (771)
T TIGR01069 508 EFKEEINVLIE 518 (771)
T ss_pred hhHHHHHHHHH
Confidence 44456666654
No 325
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=22.53 E-value=3.6e+02 Score=20.64 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=10.5
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHH
Q 023682 87 LDRQKEEFDQYIKVQEEYLAKGV 109 (279)
Q Consensus 87 l~~q~~EiD~~i~~q~e~lr~~l 109 (279)
+..+...+-.-|....+.|+..|
T Consensus 33 l~~~~~~~~~~I~~~f~~l~~~L 55 (127)
T smart00502 33 VEENAADVEAQIKAAFDELRNAL 55 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444445555544
No 326
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=22.16 E-value=3.1e+02 Score=19.83 Aligned_cols=31 Identities=16% Similarity=0.376 Sum_probs=16.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
+-+...+|..+.-+...|...+..+..+.++
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ 35 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDVNALRADVQA 35 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555543
No 327
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=21.82 E-value=53 Score=23.89 Aligned_cols=20 Identities=35% Similarity=0.788 Sum_probs=16.3
Q ss_pred cchhhHhcC--CCCCCCccccc
Q 023682 252 LCKDCDVLV--AVCPVCQFVKN 271 (279)
Q Consensus 252 lC~~C~~~l--~~CPvCr~~i~ 271 (279)
+|..|+..+ ..||.|...+.
T Consensus 31 FC~~C~e~~l~~~CPNCgGelv 52 (57)
T PF06906_consen 31 FCADCAETMLNGVCPNCGGELV 52 (57)
T ss_pred ccHHHHHHHhcCcCcCCCCccc
Confidence 699999886 89999986543
No 328
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=21.82 E-value=1.6e+02 Score=25.36 Aligned_cols=12 Identities=17% Similarity=0.216 Sum_probs=7.7
Q ss_pred HhhHHHHHHHHH
Q 023682 87 LDRQKEEFDQYI 98 (279)
Q Consensus 87 l~~q~~EiD~~i 98 (279)
+++=..|++++.
T Consensus 36 ~~~L~~El~~L~ 47 (160)
T PRK06342 36 LKALEDQLAQAR 47 (160)
T ss_pred HHHHHHHHHHHH
Confidence 556667777664
No 329
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=21.50 E-value=6.6e+02 Score=29.05 Aligned_cols=44 Identities=27% Similarity=0.661 Sum_probs=31.2
Q ss_pred ccccccccccccc-ceEEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEA-SVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~-~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
....|.+|.+--. --.+.-|||. .|..|... -..||+|...+..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~-~c~~c~~~~l~~~s~~~~~ksi~~d 1200 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHE-PCCRCDELWLYASSRCPICKSIKGD 1200 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechh-HhhhHHHHHHHHhccCcchhhhhhh
Confidence 4458999998544 2333469998 78888765 3899999865443
No 330
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.47 E-value=5.9e+02 Score=22.72 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=48.4
Q ss_pred HHHhhHHHHHHHHHHHh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHH
Q 023682 85 TELDRQKEEFDQYIKVQ------EEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKD-MEIENMNRKNRELIERIK 154 (279)
Q Consensus 85 ~~l~~q~~EiD~~i~~q------~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe-~Eie~~~kk~~eLeErl~ 154 (279)
+-|.+|...+.+||+-. -+.+-..|++.++++....+.+.++++..|-|--- -|--++.|.+..||..++
T Consensus 27 s~iK~qiRd~eRlLkk~~LP~~Vr~e~er~L~~Lk~ql~~~~l~~k~rkif~ryrkVRFFErkKaeR~irrLeK~~k 103 (199)
T KOG4484|consen 27 SSIKNQIRDLERLLKKKDLPPEVREELERKLQDLKKQLDNHELLAKERKIFKRYRKVRFFERKKAERSIRRLEKLIK 103 (199)
T ss_pred HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999932 23445556667777777778889989887754322 344566677777776665
No 331
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=21.34 E-value=48 Score=23.01 Aligned_cols=11 Identities=27% Similarity=0.797 Sum_probs=4.3
Q ss_pred ccccccccccc
Q 023682 228 HQMICRACKAK 238 (279)
Q Consensus 228 ~~~~C~iC~~~ 238 (279)
+...|.+|...
T Consensus 33 ~~w~CP~C~a~ 43 (47)
T PF00301_consen 33 DDWVCPVCGAP 43 (47)
T ss_dssp TT-B-TTTSSB
T ss_pred CCCcCcCCCCc
Confidence 34455555443
No 332
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=21.21 E-value=5e+02 Score=21.84 Aligned_cols=47 Identities=30% Similarity=0.373 Sum_probs=36.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 183 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq 183 (279)
+-|.+||+-|.-++..|.-|.|.+-++. ....+...++..|+.+|..
T Consensus 78 Kvl~aKdETI~~lk~EN~fLKeAl~s~Q-------E~y~ed~kTI~~L~~qL~~ 124 (126)
T PF13118_consen 78 KVLDAKDETIEALKNENRFLKEALYSMQ-------ELYEEDRKTIELLREQLKI 124 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHHHHh
Confidence 5578999999999999999999887764 3444666677778877753
No 333
>PHA01750 hypothetical protein
Probab=21.21 E-value=3.7e+02 Score=20.29 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023682 137 MEIENMNRKNRELIERI 153 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl 153 (279)
.||+.++++.-+|++.+
T Consensus 49 ~ei~~~kikqDnl~~qv 65 (75)
T PHA01750 49 TEIEELKIKQDELSRQV 65 (75)
T ss_pred HHHHHHHHhHHHHHHHH
Confidence 34444444444444433
No 334
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=21.11 E-value=36 Score=20.32 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=5.4
Q ss_pred CCCCCCccc
Q 023682 261 AVCPVCQFV 269 (279)
Q Consensus 261 ~~CPvCr~~ 269 (279)
..||.|..+
T Consensus 17 ~fC~~CG~~ 25 (26)
T PF13248_consen 17 KFCPNCGAK 25 (26)
T ss_pred ccChhhCCC
Confidence 566666554
No 335
>PRK11020 hypothetical protein; Provisional
Probab=21.11 E-value=4.9e+02 Score=21.63 Aligned_cols=48 Identities=21% Similarity=0.167 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q 023682 122 SAIEKGLAKKLQEKDMEIENMNRKNRELIE-RIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 122 ~ave~~~~~rLreKe~Eie~~~kk~~eLeE-rl~ql~~E~qaWq~~A~~ 169 (279)
++..++-...+.+-..||+.+.+++..|.. +-..+..|.+..+...=.
T Consensus 23 aa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~~lske~~~l~~lpF~ 71 (118)
T PRK11020 23 AASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQKLSKEAQKLMKLPFS 71 (118)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 344444455566667788999999888876 677888888887765444
No 336
>PF11505 DUF3216: Protein of unknown function (DUF3216); InterPro: IPR023108 This domain is found in a family of proteins with unknown function and appears to be restricted to the Thermococcaceae. ; PDB: 2HJM_A.
Probab=20.95 E-value=4.2e+02 Score=21.17 Aligned_cols=39 Identities=23% Similarity=0.493 Sum_probs=25.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhH
Q 023682 92 EEFDQYIKVQEEYLAKGVQDMKQRHM--ASFLSAIEKGLAKKLQEKD 136 (279)
Q Consensus 92 ~EiD~~i~~q~e~lr~~l~e~r~rh~--~~ll~ave~~~~~rLreKe 136 (279)
.-||+||.++ .+|+-+|-.|. .+++.-+| ++.--|+.|-
T Consensus 21 ~~IDsFv~Ln-----~glEskrGe~Fi~vsIlGFlE-GiLttLk~K~ 61 (97)
T PF11505_consen 21 EAIDSFVALN-----EGLESKRGEEFIKVSILGFLE-GILTTLKLKY 61 (97)
T ss_dssp HHHHHHHHHT-----TTHHHHH-HHHHHHHHHHHHH-HHHHHHTTT-
T ss_pred HHHHHHHHHh-----hhhhhhchHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 4589999876 56777777777 45566565 5555666664
No 337
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=20.88 E-value=3.5e+02 Score=21.67 Aligned_cols=36 Identities=31% Similarity=0.323 Sum_probs=27.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRA 167 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A 167 (279)
|.=.++|.+-++|+++++++..+++..|-..++...
T Consensus 10 LqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~ 45 (96)
T PF11365_consen 10 LQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKY 45 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 444578889999999999999999887766555443
No 338
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=20.74 E-value=1e+03 Score=25.13 Aligned_cols=30 Identities=17% Similarity=0.139 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 157 AAEAQNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 157 ~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
..|-...++.+..++..-+.|-..++++..
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777777777777777776643
No 339
>PF10886 DUF2685: Protein of unknown function (DUF2685); InterPro: IPR024362 This is a family of uncharacterised bacteriophage proteins. Their function in unknown.
Probab=20.66 E-value=50 Score=23.78 Aligned_cols=17 Identities=24% Similarity=0.673 Sum_probs=13.0
Q ss_pred CCCCCCCcccccceEEE
Q 023682 260 VAVCPVCQFVKNASVLV 276 (279)
Q Consensus 260 l~~CPvCr~~i~~~v~v 276 (279)
+..|.+|..+|.....|
T Consensus 1 m~~CvVCKqpi~~a~~v 17 (54)
T PF10886_consen 1 MEICVVCKQPIDDALVV 17 (54)
T ss_pred CCeeeeeCCccCcceEE
Confidence 46799999999886443
No 340
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=20.58 E-value=40 Score=33.56 Aligned_cols=32 Identities=19% Similarity=0.501 Sum_probs=27.1
Q ss_pred ccccccccccccccc-eEEecCCCcccchhhHhc
Q 023682 227 NHQMICRACKAKEAS-VLLMPCRHLCLCKDCDVL 259 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~-v~llPC~HlclC~~C~~~ 259 (279)
.....|-+|.+.... ++.++|+|. +|..|...
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~-~c~~cw~~ 100 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHP-FCPPCWTG 100 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcH-HHHHHHHH
Confidence 345689999998885 889999999 89999765
No 341
>PRK10963 hypothetical protein; Provisional
Probab=20.58 E-value=3.9e+02 Score=24.00 Aligned_cols=17 Identities=12% Similarity=0.096 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023682 141 NMNRKNRELIERIKQMA 157 (279)
Q Consensus 141 ~~~kk~~eLeErl~ql~ 157 (279)
.++.||.+||.++.++.
T Consensus 48 ~LR~r~~~Le~~l~~Li 64 (223)
T PRK10963 48 RQRNHIHVLEEEMTLLM 64 (223)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 342
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=20.46 E-value=53 Score=28.69 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=13.9
Q ss_pred CCCCCCCcccccceEEE
Q 023682 260 VAVCPVCQFVKNASVLV 276 (279)
Q Consensus 260 l~~CPvCr~~i~~~v~v 276 (279)
--.||+||..|.+.+.|
T Consensus 80 ~L~CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 80 ELACPLCRGEVKGWTVV 96 (162)
T ss_pred cccCccccCceeceEEc
Confidence 35899999999888765
No 343
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=20.46 E-value=6.1e+02 Score=22.48 Aligned_cols=31 Identities=23% Similarity=0.171 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 104 YLAKGVQDMKQRHMASFLSAIEKGLAKKLQE 134 (279)
Q Consensus 104 ~lr~~l~e~r~rh~~~ll~ave~~~~~rLre 134 (279)
+|+....+..++|...+|--+...+++=-+|
T Consensus 95 kLqe~~A~e~~~~~~~~lleAkk~asqYQkE 125 (176)
T PF06364_consen 95 KLQEAVANENQRRADMALLEAKKMASQYQKE 125 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777788888888888777766666644433
No 344
>KOG4191 consensus Histone acetyltransferases PCAF/SAGA/ADA, subunit TADA3L/NGG1 [Chromatin structure and dynamics]
Probab=20.43 E-value=9.4e+02 Score=24.67 Aligned_cols=93 Identities=19% Similarity=0.263 Sum_probs=0.0
Q ss_pred hhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHH
Q 023682 80 ADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENM-NRKNRELIERIKQMAA 158 (279)
Q Consensus 80 ~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~-~kk~~eLeErl~ql~~ 158 (279)
.|++.++|.+-+.||-. |..++++++..|...-.+.+ .=.....+|+..|.||+.+ .|++.-+..|=++...
T Consensus 403 dDEvlaeLR~lqaeLk~-vS~~N~k~k~~Ll~la~eE~------a~qe~~q~lddlDkqI~qaYvKr~r~~kkrKkht~~ 475 (516)
T KOG4191|consen 403 DDEVLAELRKLQAELKA-VSAHNRKKKHDLLRLAPEEM------ARQEFQQVLDDLDKQIEQAYVKRNRSRKKRKKHTVT 475 (516)
T ss_pred hHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchH
Q ss_pred HHHHHHHHHhhhHHHHHHHHH
Q 023682 159 EAQNWHYRAKYNESVVNLLKS 179 (279)
Q Consensus 159 E~qaWq~~A~~nea~a~~Lr~ 179 (279)
|.+.--..-.+..+....|++
T Consensus 476 ek~~~~~~~~eq~~~~~~Lks 496 (516)
T KOG4191|consen 476 EKIGSTSQISEQSGSFPVLKS 496 (516)
T ss_pred hhhhhHHHHHHHhhhHHHHHH
No 345
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=20.26 E-value=1.4e+03 Score=26.64 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=54.4
Q ss_pred HHHHhHHHHHHHHHHHHHHH----------------HHHHHHHHHHH----------HHHHHHhhHHHHHHHHHHHHHHH
Q 023682 97 YIKVQEEYLAKGVQDMKQRH----------------MASFLSAIEKG----------LAKKLQEKDMEIENMNRKNRELI 150 (279)
Q Consensus 97 ~i~~q~e~lr~~l~e~r~rh----------------~~~ll~ave~~----------~~~rLreKe~Eie~~~kk~~eLe 150 (279)
.|+.+.|.++.+|+++-+.+ ...+|..|++. +.++|++.+.-++.++.+.+.--
T Consensus 1560 ~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns 1639 (1758)
T KOG0994|consen 1560 DVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNS 1639 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666677777666654433 34455544432 34667777777777777777666
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 023682 151 ERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 183 (279)
Q Consensus 151 Erl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq 183 (279)
...+++..++..-+..|.+.+...+.|...++.
T Consensus 1640 ~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~ 1672 (1758)
T KOG0994|consen 1640 AEAKQAEKTAGSAKEQALSAEQGLEILQKYYEL 1672 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777777777777777777666655554443
No 346
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=20.23 E-value=3.4e+02 Score=20.72 Aligned_cols=34 Identities=26% Similarity=0.408 Sum_probs=25.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 129 AKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 129 ~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
+.+||..=+-|+++.-....+.++++.+.+|+..
T Consensus 3 ~~~Lr~~ieRiErLEeEk~~i~~dikdVyaEAK~ 36 (74)
T PF10073_consen 3 AEQLRQFIERIERLEEEKKAISDDIKDVYAEAKG 36 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666677777777777888888888877654
Done!