Query 023682
Match_columns 279
No_of_seqs 265 out of 1185
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 11:00:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ea5_A Cell growth regulator w 99.5 3.5E-14 1.2E-18 104.4 4.5 52 228-279 14-65 (68)
2 2vje_B MDM4 protein; proto-onc 99.4 7E-14 2.4E-18 101.1 2.4 52 228-279 6-63 (63)
3 2yho_A E3 ubiquitin-protein li 99.4 1.4E-13 4.8E-18 103.9 3.0 54 226-279 15-68 (79)
4 4ic3_A E3 ubiquitin-protein li 99.4 2.6E-13 8.7E-18 100.8 3.4 54 226-279 21-74 (74)
5 2vje_A E3 ubiquitin-protein li 99.3 1.5E-13 5.2E-18 99.6 1.6 52 228-279 7-64 (64)
6 2ecg_A Baculoviral IAP repeat- 99.3 1.7E-13 5.9E-18 101.7 0.4 54 226-279 22-75 (75)
7 3t6p_A Baculoviral IAP repeat- 99.1 5E-11 1.7E-15 112.8 3.4 54 226-279 292-345 (345)
8 4ayc_A E3 ubiquitin-protein li 98.5 1.1E-06 3.7E-11 71.9 11.6 44 230-274 54-101 (138)
9 2ecn_A Ring finger protein 141 98.5 3.9E-08 1.3E-12 71.0 1.4 50 226-277 12-65 (70)
10 2d8t_A Dactylidin, ring finger 98.4 1.7E-07 5.8E-12 68.0 4.4 44 228-272 14-61 (71)
11 2ysl_A Tripartite motif-contai 98.4 1.8E-07 6.3E-12 67.6 3.9 46 226-272 17-69 (73)
12 2csy_A Zinc finger protein 183 98.4 2.1E-07 7E-12 69.2 4.0 47 227-274 13-63 (81)
13 1chc_A Equine herpes virus-1 r 98.4 1.1E-07 3.8E-12 68.0 2.3 48 229-277 5-57 (68)
14 2egp_A Tripartite motif-contai 98.4 2.2E-07 7.5E-12 68.1 3.5 46 226-272 9-65 (79)
15 2ct2_A Tripartite motif protei 98.3 4.6E-07 1.6E-11 67.6 3.8 46 226-272 12-68 (88)
16 2ea6_A Ring finger protein 4; 98.3 3.1E-07 1.1E-11 65.3 2.6 45 227-272 13-68 (69)
17 2djb_A Polycomb group ring fin 98.3 8.5E-07 2.9E-11 64.4 4.6 49 224-273 10-63 (72)
18 2ecw_A Tripartite motif-contai 98.2 9.5E-07 3.3E-11 65.1 4.8 46 226-272 16-71 (85)
19 2xeu_A Ring finger protein 4; 98.2 4.3E-07 1.5E-11 63.7 2.5 49 229-278 3-64 (64)
20 2kiz_A E3 ubiquitin-protein li 98.2 7E-07 2.4E-11 64.0 3.5 46 228-274 13-65 (69)
21 2ecm_A Ring finger and CHY zin 98.2 5.8E-07 2E-11 61.4 3.0 43 229-272 5-55 (55)
22 2ecv_A Tripartite motif-contai 98.2 7.3E-07 2.5E-11 65.7 3.6 46 226-272 16-71 (85)
23 2ect_A Ring finger protein 126 98.2 8.5E-07 2.9E-11 65.1 3.8 46 227-273 13-65 (78)
24 2y1n_A E3 ubiquitin-protein li 98.2 6.6E-07 2.3E-11 85.8 3.9 49 229-278 332-385 (389)
25 2ep4_A Ring finger protein 24; 98.2 8.2E-07 2.8E-11 64.5 3.2 49 226-275 12-67 (74)
26 1iym_A EL5; ring-H2 finger, ub 98.2 1.2E-06 4E-11 60.0 3.5 43 228-271 4-54 (55)
27 3ng2_A RNF4, snurf, ring finge 98.1 5.5E-07 1.9E-11 64.7 1.5 44 228-272 9-63 (71)
28 2yur_A Retinoblastoma-binding 98.1 2.1E-06 7.1E-11 62.8 4.6 47 224-271 10-63 (74)
29 1bor_A Transcription factor PM 98.1 7.8E-07 2.7E-11 62.0 1.8 44 228-272 5-49 (56)
30 2ecy_A TNF receptor-associated 98.1 2E-06 6.7E-11 61.3 3.9 46 226-272 12-62 (66)
31 3ztg_A E3 ubiquitin-protein li 98.1 2.1E-06 7.2E-11 64.9 3.4 45 225-270 9-60 (92)
32 2ecj_A Tripartite motif-contai 98.1 2.1E-06 7.3E-11 59.1 3.1 40 226-266 12-58 (58)
33 1e4u_A Transcriptional repress 98.0 9.5E-07 3.2E-11 66.3 1.1 47 227-274 9-64 (78)
34 2l0b_A E3 ubiquitin-protein li 98.0 2.7E-06 9.2E-11 64.8 3.4 44 228-272 39-89 (91)
35 1x4j_A Ring finger protein 38; 98.0 3.7E-06 1.3E-10 61.4 3.8 44 228-272 22-72 (75)
36 1g25_A CDK-activating kinase a 98.0 1.7E-06 5.9E-11 61.4 1.7 43 229-272 3-55 (65)
37 3fl2_A E3 ubiquitin-protein li 98.0 2.6E-06 8.8E-11 68.2 2.3 44 228-272 51-99 (124)
38 3l11_A E3 ubiquitin-protein li 97.9 3.9E-06 1.3E-10 66.1 3.0 45 227-272 13-62 (115)
39 3lrq_A E3 ubiquitin-protein li 97.9 3.1E-06 1.1E-10 65.6 1.3 46 226-272 19-70 (100)
40 1jm7_A BRCA1, breast cancer ty 97.9 1.9E-06 6.5E-11 67.1 0.0 44 228-272 20-70 (112)
41 2ckl_A Polycomb group ring fin 97.9 4.6E-06 1.6E-10 65.1 2.1 46 226-272 12-62 (108)
42 2ysj_A Tripartite motif-contai 97.9 1.1E-05 3.9E-10 56.7 4.0 40 226-266 17-63 (63)
43 2y43_A E3 ubiquitin-protein li 97.8 4.7E-06 1.6E-10 64.0 1.8 45 227-272 20-69 (99)
44 1t1h_A Gspef-atpub14, armadill 97.8 1.1E-05 3.7E-10 59.1 3.4 45 227-272 6-55 (78)
45 2ckl_B Ubiquitin ligase protei 97.8 8.4E-06 2.9E-10 68.3 3.0 45 226-271 51-101 (165)
46 1z6u_A NP95-like ring finger p 97.8 6.4E-06 2.2E-10 68.7 2.2 45 228-273 77-126 (150)
47 1jm7_B BARD1, BRCA1-associated 97.7 5.5E-06 1.9E-10 65.7 0.9 44 227-271 20-66 (117)
48 3hct_A TNF receptor-associated 97.7 1.8E-05 6.2E-10 62.8 3.7 46 226-272 15-65 (118)
49 1v87_A Deltex protein 2; ring- 97.6 1.4E-05 4.7E-10 62.7 1.4 42 230-272 26-94 (114)
50 1rmd_A RAG1; V(D)J recombinati 97.6 1.9E-05 6.5E-10 62.3 1.8 46 226-272 20-70 (116)
51 4ap4_A E3 ubiquitin ligase RNF 97.5 4.2E-05 1.4E-09 60.5 2.9 50 228-278 71-133 (133)
52 4ap4_A E3 ubiquitin ligase RNF 97.5 3.9E-05 1.3E-09 60.7 2.3 44 228-272 6-60 (133)
53 2f42_A STIP1 homology and U-bo 97.5 0.00031 1.1E-08 60.6 8.0 44 228-272 105-153 (179)
54 2ecl_A Ring-box protein 2; RNF 97.5 5.7E-05 2E-09 56.3 2.9 30 242-272 43-76 (81)
55 3knv_A TNF receptor-associated 97.3 3.5E-05 1.2E-09 63.6 -0.5 45 225-270 27-76 (141)
56 3hcs_A TNF receptor-associated 97.2 0.0002 6.9E-09 59.9 3.7 46 226-272 15-65 (170)
57 3dpl_R Ring-box protein 1; ubi 97.0 0.00038 1.3E-08 54.9 3.3 30 241-271 67-100 (106)
58 2kr4_A Ubiquitin conjugation f 97.0 0.00054 1.8E-08 51.5 3.9 45 227-272 12-60 (85)
59 2c2l_A CHIP, carboxy terminus 97.0 0.00044 1.5E-08 61.2 3.6 44 228-272 207-255 (281)
60 2kre_A Ubiquitin conjugation f 97.0 0.00058 2E-08 53.1 3.9 46 226-272 26-75 (100)
61 1wgm_A Ubiquitin conjugation f 96.9 0.00072 2.4E-08 52.4 3.9 45 227-272 20-69 (98)
62 4a0k_B E3 ubiquitin-protein li 96.4 0.00049 1.7E-08 55.4 0.0 41 230-271 49-111 (117)
63 2d8s_A Cellular modulator of i 96.3 0.0033 1.1E-07 47.0 3.8 44 228-272 14-70 (80)
64 3vk6_A E3 ubiquitin-protein li 96.0 0.004 1.4E-07 49.0 3.2 44 231-275 3-52 (101)
65 2yu4_A E3 SUMO-protein ligase 95.8 0.0047 1.6E-07 47.0 2.8 41 228-269 6-59 (94)
66 1wim_A KIAA0161 protein; ring 95.5 0.0029 9.9E-08 47.9 0.4 40 229-269 5-61 (94)
67 2v71_A Nuclear distribution pr 95.0 0.67 2.3E-05 40.1 13.9 74 99-184 23-100 (189)
68 3htk_C E3 SUMO-protein ligase 93.9 0.02 6.9E-07 52.2 2.0 45 226-271 178-231 (267)
69 2oqq_A Transcription factor HY 93.3 0.28 9.7E-06 32.4 6.1 35 134-168 7-41 (42)
70 2ko5_A Ring finger protein Z; 91.6 0.043 1.5E-06 42.7 0.6 47 227-276 26-77 (99)
71 1vyx_A ORF K3, K3RING; zinc-bi 91.3 0.11 3.7E-06 36.6 2.4 44 228-271 5-58 (60)
72 2bay_A PRE-mRNA splicing facto 88.8 0.19 6.7E-06 35.2 2.0 42 230-272 4-50 (61)
73 4etp_A Kinesin-like protein KA 86.3 2 6.7E-05 40.9 8.1 59 130-188 3-61 (403)
74 3oja_B Anopheles plasmodium-re 86.2 24 0.00082 34.0 16.0 66 119-184 505-570 (597)
75 3oja_B Anopheles plasmodium-re 85.9 15 0.00053 35.3 14.4 37 151-187 544-580 (597)
76 1ci6_A Transcription factor AT 84.6 3.2 0.00011 29.4 6.5 37 132-168 25-61 (63)
77 3mq9_A Bone marrow stromal ant 83.7 9.8 0.00033 35.9 11.6 23 93-115 397-419 (471)
78 2jee_A YIIU; FTSZ, septum, coi 82.5 8.7 0.0003 28.8 8.4 23 146-168 50-72 (81)
79 3o0z_A RHO-associated protein 81.2 24 0.00081 29.8 14.9 98 81-186 5-111 (168)
80 3iv1_A Tumor susceptibility ge 81.1 15 0.0005 27.3 10.1 33 119-151 3-39 (78)
81 3s9g_A Protein hexim1; cyclin 81.0 17 0.00057 28.2 9.7 30 129-165 64-93 (104)
82 1dip_A Delta-sleep-inducing pe 80.2 1.3 4.3E-05 32.8 3.0 32 137-168 15-46 (78)
83 2v71_A Nuclear distribution pr 79.2 30 0.001 29.7 16.3 57 132-188 90-146 (189)
84 1a93_B MAX protein, coiled coi 78.8 2.6 8.9E-05 26.6 3.7 23 134-156 11-33 (34)
85 2v66_B Nuclear distribution pr 78.5 5.4 0.00018 31.6 6.5 40 143-182 2-41 (111)
86 3nmd_A CGMP dependent protein 78.2 6.2 0.00021 28.9 6.2 34 132-165 35-68 (72)
87 2ct0_A Non-SMC element 1 homol 75.9 3.6 0.00012 30.0 4.5 45 228-273 14-65 (74)
88 1hjb_A Ccaat/enhancer binding 74.3 25 0.00087 26.4 9.0 31 137-167 43-73 (87)
89 1t6f_A Geminin; coiled-coil, c 74.1 4.3 0.00015 25.8 3.8 22 130-151 14-35 (37)
90 2v66_B Nuclear distribution pr 73.0 32 0.0011 27.1 13.7 85 98-187 8-92 (111)
91 1jnm_A Proto-oncogene C-JUN; B 73.0 17 0.00059 25.2 7.3 31 132-162 24-54 (62)
92 2q6q_A Spindle POLE BODY compo 72.0 25 0.00087 25.5 8.0 47 128-174 8-54 (74)
93 3oja_A Leucine-rich immune mol 71.6 61 0.0021 30.4 13.2 55 132-186 423-477 (487)
94 2wvr_A Geminin; DNA replicatio 71.4 24 0.00081 30.7 9.2 61 102-177 95-155 (209)
95 1t3j_A Mitofusin 1; coiled coi 70.5 18 0.0006 27.9 7.4 54 119-183 36-89 (96)
96 2l5g_B Putative uncharacterize 69.9 13 0.00045 24.4 5.5 32 129-160 8-39 (42)
97 3k1l_B Fancl; UBC, ring, RWD, 69.6 1.3 4.4E-05 42.0 0.9 46 228-274 307-375 (381)
98 3mq7_A Bone marrow stromal ant 69.5 41 0.0014 26.8 12.8 86 79-166 13-107 (121)
99 1deq_A Fibrinogen (alpha chain 67.6 81 0.0028 29.9 12.7 73 87-160 79-164 (390)
100 1fmh_A General control protein 63.8 14 0.00047 22.4 4.3 27 134-160 5-31 (33)
101 3i00_A HIP-I, huntingtin-inter 63.4 28 0.00096 27.7 7.6 31 134-164 12-42 (120)
102 3mq7_A Bone marrow stromal ant 63.0 48 0.0016 26.4 8.6 50 104-154 57-109 (121)
103 1wle_A Seryl-tRNA synthetase; 62.9 59 0.002 31.7 11.3 73 81-158 51-137 (501)
104 1wlq_A Geminin; coiled-coil; 2 62.3 47 0.0016 24.9 9.2 45 104-151 20-66 (83)
105 1kd8_A GABH AIV, GCN4 acid bas 60.6 10 0.00035 24.1 3.5 29 131-159 2-30 (36)
106 1kd8_B GABH BLL, GCN4 acid bas 60.2 12 0.0004 23.8 3.7 27 131-157 2-28 (36)
107 2zxx_A Geminin; coiled-coil, c 58.1 54 0.0019 24.3 8.6 47 104-153 16-64 (79)
108 2jun_A Midline-1; B-BOX, TRIM, 57.7 4.1 0.00014 30.3 1.6 30 229-259 3-35 (101)
109 3na7_A HP0958; flagellar bioge 56.1 1E+02 0.0035 26.8 13.8 53 132-184 92-144 (256)
110 2fiy_A Protein FDHE homolog; F 56.0 5.4 0.00018 36.8 2.4 43 228-270 181-232 (309)
111 3ghg_A Fibrinogen alpha chain; 54.0 52 0.0018 32.6 9.0 17 91-107 80-96 (562)
112 2wt7_A Proto-oncogene protein 52.9 54 0.0019 22.7 9.9 37 132-168 25-61 (63)
113 1uii_A Geminin; human, DNA rep 52.6 70 0.0024 23.9 8.9 48 102-152 26-75 (83)
114 3u1c_A Tropomyosin alpha-1 cha 52.5 74 0.0025 24.1 13.5 54 131-184 38-98 (101)
115 1weo_A Cellulose synthase, cat 51.8 9.3 0.00032 29.2 2.7 44 228-271 15-69 (93)
116 4egx_A Kinesin-like protein KI 51.5 46 0.0016 28.0 7.4 30 125-157 7-36 (184)
117 3ghg_A Fibrinogen alpha chain; 50.9 1.9E+02 0.0064 28.6 12.4 75 82-162 50-128 (562)
118 3a7p_A Autophagy protein 16; c 50.6 1.1E+02 0.0036 25.4 12.5 26 136-161 102-127 (152)
119 3u59_A Tropomyosin beta chain; 50.3 79 0.0027 23.8 13.5 53 132-184 39-98 (101)
120 1gd2_E Transcription factor PA 50.3 68 0.0023 23.0 7.8 14 146-159 52-65 (70)
121 3nmd_A CGMP dependent protein 50.2 42 0.0014 24.5 5.9 17 130-146 47-63 (72)
122 1t2k_D Cyclic-AMP-dependent tr 49.4 60 0.0021 22.2 9.7 35 132-166 24-58 (61)
123 3iv1_A Tumor susceptibility ge 49.2 77 0.0026 23.4 9.9 30 74-103 3-36 (78)
124 3u06_A Protein claret segregat 48.5 61 0.0021 30.7 8.5 55 133-187 6-60 (412)
125 2b5u_A Colicin E3; high resolu 48.1 2.1E+02 0.0073 28.1 13.0 56 130-185 349-415 (551)
126 3m91_A Proteasome-associated A 47.3 64 0.0022 21.9 6.2 32 129-160 8-39 (51)
127 2yy0_A C-MYC-binding protein; 47.1 41 0.0014 22.9 5.2 28 137-164 19-46 (53)
128 3hnw_A Uncharacterized protein 46.4 1.1E+02 0.0039 24.5 11.3 67 94-162 67-135 (138)
129 2akf_A Coronin-1A; coiled coil 45.7 49 0.0017 20.1 4.7 26 136-161 5-30 (32)
130 3vkg_A Dynein heavy chain, cyt 45.5 2.8E+02 0.0094 33.4 14.6 18 143-160 2034-2051(3245)
131 4ani_A Protein GRPE; chaperone 44.4 56 0.0019 28.4 6.9 21 92-113 59-79 (213)
132 3vem_A Helicase protein MOM1; 44.4 1.2E+02 0.004 24.0 10.4 29 76-104 30-58 (115)
133 1ez3_A Syntaxin-1A; three heli 44.3 1E+02 0.0035 23.4 10.0 83 102-187 21-110 (127)
134 3m48_A General control protein 44.2 33 0.0011 21.4 3.8 26 132-157 2-27 (33)
135 2dfs_A Myosin-5A; myosin-V, in 43.3 2.4E+02 0.0081 30.1 12.8 17 140-156 1001-1017(1080)
136 2dq0_A Seryl-tRNA synthetase; 42.6 1.1E+02 0.0036 29.4 9.3 84 80-169 11-101 (455)
137 3mq9_A Bone marrow stromal ant 42.3 2.1E+02 0.0073 26.5 13.3 53 132-187 413-465 (471)
138 3qne_A Seryl-tRNA synthetase, 42.3 1.3E+02 0.0045 29.2 9.9 59 93-157 31-91 (485)
139 2wq1_A General control protein 40.8 38 0.0013 21.0 3.7 26 132-157 2-27 (33)
140 1uo4_A General control protein 40.6 35 0.0012 21.3 3.6 27 131-157 2-28 (34)
141 1z60_A TFIIH basal transcripti 40.2 22 0.00076 24.8 3.0 37 230-267 16-59 (59)
142 1zxa_A CGMP-dependent protein 39.8 47 0.0016 23.8 4.7 39 124-162 12-50 (67)
143 3i00_A HIP-I, huntingtin-inter 39.6 1.4E+02 0.0047 23.6 11.4 21 91-112 14-34 (120)
144 1deq_A Fibrinogen (alpha chain 38.9 1.6E+02 0.0054 27.9 9.5 55 86-142 53-107 (390)
145 2hy6_A General control protein 38.8 39 0.0013 21.1 3.6 27 131-157 2-28 (34)
146 3c3g_A Alpha/beta peptide with 38.0 45 0.0015 20.7 3.7 25 132-156 2-26 (33)
147 3pwf_A Rubrerythrin; non heme 37.6 12 0.00042 31.2 1.6 16 261-276 154-169 (170)
148 1x4t_A Hypothetical protein LO 37.4 1.3E+02 0.0046 22.8 7.3 26 131-156 53-78 (92)
149 3ni0_A Bone marrow stromal ant 36.8 1.4E+02 0.0048 22.9 12.8 57 130-186 32-88 (99)
150 3a7p_A Autophagy protein 16; c 36.7 1.7E+02 0.0056 24.2 8.2 18 140-157 71-88 (152)
151 1yuz_A Nigerythrin; rubrythrin 36.4 11 0.00037 32.4 1.0 15 261-275 187-201 (202)
152 3bas_A Myosin heavy chain, str 36.2 1.3E+02 0.0044 22.2 8.7 41 140-180 31-71 (89)
153 3a2a_A Voltage-gated hydrogen 35.6 1.1E+02 0.0037 21.2 6.2 31 116-147 19-49 (58)
154 3vkg_A Dynein heavy chain, cyt 35.2 6.5E+02 0.022 30.4 15.6 12 84-95 1905-1916(3245)
155 1yk4_A Rubredoxin, RD; electro 34.9 18 0.00061 24.6 1.7 15 262-276 37-51 (52)
156 2oxj_A Hybrid alpha/beta pepti 34.4 60 0.0021 20.2 3.9 25 132-156 3-27 (34)
157 1e8j_A Rubredoxin; iron-sulfur 34.3 16 0.00056 24.8 1.5 14 262-275 38-51 (52)
158 2dgc_A Protein (GCN4); basic d 33.8 1.2E+02 0.0041 21.1 6.7 9 126-134 18-26 (63)
159 4rxn_A Rubredoxin; electron tr 33.6 16 0.00054 25.1 1.3 14 262-275 38-51 (54)
160 2v3b_B Rubredoxin 2, rubredoxi 33.4 18 0.00061 24.9 1.6 15 262-276 38-52 (55)
161 3vem_A Helicase protein MOM1; 33.3 1.8E+02 0.0061 23.0 9.0 32 116-147 47-78 (115)
162 3c3f_A Alpha/beta peptide with 32.3 63 0.0021 20.1 3.7 26 131-156 2-27 (34)
163 3s9g_A Protein hexim1; cyclin 32.2 1.7E+02 0.0059 22.5 9.5 21 143-163 64-84 (104)
164 2kn9_A Rubredoxin; metalloprot 31.9 22 0.00076 26.5 2.0 16 261-276 61-76 (81)
165 3nw0_A Non-structural maintena 31.8 29 0.00098 30.5 3.1 44 229-273 180-230 (238)
166 1jnm_A Proto-oncogene C-JUN; B 31.4 74 0.0025 21.8 4.6 30 145-174 23-52 (62)
167 2r2v_A GCN4 leucine zipper; co 30.6 76 0.0026 19.8 3.9 27 131-157 2-28 (34)
168 1ses_A Seryl-tRNA synthetase; 30.5 2.1E+02 0.0072 26.9 9.1 56 94-157 27-84 (421)
169 1hjb_A Ccaat/enhancer binding 30.3 1.5E+02 0.0052 22.0 6.5 40 143-182 35-74 (87)
170 6rxn_A Rubredoxin; electron tr 30.3 20 0.00067 23.8 1.3 14 262-275 32-45 (46)
171 1gu4_A CAAT/enhancer binding p 30.2 1.6E+02 0.0055 21.5 9.0 29 137-165 43-71 (78)
172 1s94_A S-syntaxin; three helix 29.9 2.2E+02 0.0076 23.0 9.2 83 103-187 53-141 (180)
173 1j1d_C Troponin I, TNI; THIN f 29.8 2.2E+02 0.0075 22.9 11.9 43 142-184 63-105 (133)
174 2bni_A General control protein 29.5 75 0.0026 19.8 3.7 27 131-157 2-28 (34)
175 1d7m_A Cortexillin I; coiled-c 28.6 1.9E+02 0.0066 21.9 10.1 58 102-161 15-75 (101)
176 1dx8_A Rubredoxin; electron tr 27.5 23 0.00077 25.6 1.3 15 262-276 42-56 (70)
177 3lss_A Seryl-tRNA synthetase; 26.2 4.5E+02 0.015 25.4 10.7 36 93-133 35-72 (484)
178 2dq3_A Seryl-tRNA synthetase; 25.6 1.4E+02 0.0047 28.2 6.9 10 94-103 29-38 (425)
179 1lko_A Rubrerythrin all-iron(I 25.6 18 0.00062 30.5 0.6 15 261-275 172-186 (191)
180 1a92_A Delta antigen; leucine 25.4 88 0.003 21.1 3.8 23 130-152 14-36 (50)
181 1i84_S Smooth muscle myosin he 25.1 3.7E+02 0.013 28.6 10.7 24 135-158 911-934 (1184)
182 1wt6_A Myotonin-protein kinase 24.7 1.7E+02 0.0057 21.8 5.6 20 142-161 50-69 (81)
183 3s4r_A Vimentin; alpha-helix, 24.7 2.2E+02 0.0074 21.2 12.9 35 76-115 11-45 (93)
184 1mm2_A MI2-beta; PHD, zinc fin 24.7 43 0.0015 22.9 2.3 34 228-270 8-57 (61)
185 4b6x_A AVRRPS4, avirulence pro 24.0 2.3E+02 0.0077 21.1 7.9 69 78-154 18-86 (90)
186 3thf_A Protein shroom; coiled- 23.4 2.3E+02 0.0078 24.2 7.0 44 132-175 13-57 (190)
187 1m1j_B Fibrinogen beta chain; 23.3 5.1E+02 0.017 25.0 11.0 11 2-12 20-30 (464)
188 3e98_A GAF domain of unknown f 23.3 2.2E+02 0.0077 24.8 7.4 19 139-157 74-92 (252)
189 1m1j_A Fibrinogen alpha subuni 22.7 5.3E+02 0.018 25.0 10.8 45 112-157 115-159 (491)
190 1ci6_A Transcription factor AT 22.6 1.9E+02 0.0066 19.9 7.9 35 127-161 12-47 (63)
191 2i1j_A Moesin; FERM, coiled-co 22.5 2.6E+02 0.0088 27.5 8.3 91 82-181 275-372 (575)
192 3cvf_A Homer-3, homer protein 22.0 2.4E+02 0.0082 20.7 7.2 23 139-161 15-37 (79)
193 2wg5_A General control protein 21.7 79 0.0027 24.3 3.6 7 232-238 79-85 (109)
194 1j1e_C Troponin I, TNI; THIN f 21.6 3.7E+02 0.013 22.7 11.9 44 142-185 63-106 (180)
195 1s24_A Rubredoxin 2; electron 21.5 38 0.0013 25.5 1.6 16 261-276 69-84 (87)
196 2zet_C Melanophilin; complex, 21.3 13 0.00046 30.7 -1.1 10 247-257 91-100 (153)
197 3m9b_A Proteasome-associated A 21.2 99 0.0034 27.6 4.5 45 129-187 53-97 (251)
198 1m1j_B Fibrinogen beta chain; 21.0 5.6E+02 0.019 24.6 11.5 23 129-151 127-149 (464)
199 2l5u_A Chromodomain-helicase-D 20.6 39 0.0013 23.1 1.4 11 228-238 10-20 (61)
200 2ve7_A Kinetochore protein HEC 20.4 1.4E+02 0.0047 27.1 5.5 35 128-162 176-210 (315)
201 1x79_B RAB GTPase binding effe 20.2 3.1E+02 0.011 21.4 8.8 24 133-156 16-39 (112)
202 1gu4_A CAAT/enhancer binding p 20.2 1.7E+02 0.0059 21.3 4.9 27 143-169 35-61 (78)
No 1
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=3.5e-14 Score=104.39 Aligned_cols=52 Identities=29% Similarity=0.735 Sum_probs=48.9
Q ss_pred cccccccccccccceEEecCCCcccchhhHhcCCCCCCCcccccceEEEeeC
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 279 (279)
+...|+||++++++++|+||||+++|..|...+..||+||.+|...++||.+
T Consensus 14 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~CR~~i~~~~~i~~~ 65 (68)
T 2ea5_A 14 NSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSGP 65 (68)
T ss_dssp CSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCSSCTTTCCCCCCEECCCSS
T ss_pred CCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCCCCCCCCcchhceEEeecC
Confidence 4568999999999999999999999999999999999999999999999863
No 2
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.40 E-value=7e-14 Score=101.06 Aligned_cols=52 Identities=19% Similarity=0.468 Sum_probs=47.6
Q ss_pred cccccccccccccceEEe--cCCCcccchhhHhcCC----CCCCCcccccceEEEeeC
Q 023682 228 HQMICRACKAKEASVLLM--PCRHLCLCKDCDVLVA----VCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~ll--PC~HlclC~~C~~~l~----~CPvCr~~i~~~v~v~~S 279 (279)
....|+||++++++.+++ ||||+++|..|+..+. .||+||.+|...++||+|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 456799999999988777 9999999999998875 999999999999999987
No 3
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.38 E-value=1.4e-13 Score=103.92 Aligned_cols=54 Identities=28% Similarity=0.638 Sum_probs=50.5
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhcCCCCCCCcccccceEEEeeC
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 279 (279)
+.+...|+||++...+++++||||.++|..|...+..||+||.+|...+++|++
T Consensus 15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~p 68 (79)
T 2yho_A 15 LKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQHVYLP 68 (79)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSBCTTTCCBCCEEEECBCT
T ss_pred CCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCcCCCCCchhhCeEEEEeC
Confidence 445678999999999999999999999999999999999999999999999975
No 4
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.36 E-value=2.6e-13 Score=100.80 Aligned_cols=54 Identities=28% Similarity=0.741 Sum_probs=50.0
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhcCCCCCCCcccccceEEEeeC
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 279 (279)
+.+...|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCSBCTTTCCBCSEEEECBC-
T ss_pred CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCccCCCcCcCccCcEEEeeC
Confidence 345678999999999999999999999999999999999999999999999997
No 5
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.35 E-value=1.5e-13 Score=99.60 Aligned_cols=52 Identities=23% Similarity=0.469 Sum_probs=47.5
Q ss_pred cccccccccccccceEEe--cCCCcccchhhHhcC----CCCCCCcccccceEEEeeC
Q 023682 228 HQMICRACKAKEASVLLM--PCRHLCLCKDCDVLV----AVCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~ll--PC~HlclC~~C~~~l----~~CPvCr~~i~~~v~v~~S 279 (279)
+...|+||++++.+++|+ ||||+++|..|...+ ..||+||.+|...+++|+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 455799999999999998 999999999999875 4699999999999999986
No 6
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.32 E-value=1.7e-13 Score=101.75 Aligned_cols=54 Identities=28% Similarity=0.752 Sum_probs=50.6
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhcCCCCCCCcccccceEEEeeC
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 279 (279)
+.+...|.||++...+.+++||||.++|..|...+..||+||.+|...++||+|
T Consensus 22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 22 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCSBCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCCCCccCCceecCcEEEecC
Confidence 345678999999999999999999999999999999999999999999999997
No 7
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.06 E-value=5e-11 Score=112.77 Aligned_cols=54 Identities=33% Similarity=0.831 Sum_probs=49.4
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhcCCCCCCCcccccceEEEeeC
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLVAVCPVCQFVKNASVLVHLS 279 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l~~CPvCr~~i~~~v~v~~S 279 (279)
+.....|.||++...+.+++||||.|+|..|...+..||+||.+|...++||+|
T Consensus 292 l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 292 LQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp HHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCSBCTTTCCBCCEEEECC--
T ss_pred CcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcCCcCCCCCCCccCeEEeecC
Confidence 445678999999999999999999999999999999999999999999999997
No 8
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.50 E-value=1.1e-06 Score=71.90 Aligned_cols=44 Identities=20% Similarity=0.527 Sum_probs=38.1
Q ss_pred cccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccceE
Q 023682 230 MICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASV 274 (279)
Q Consensus 230 ~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 274 (279)
..|.||++...+.+++||||. +|..|... -..||+||.++....
T Consensus 54 ~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 54 LQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp SBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred CCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 469999999999999999996 99999765 378999999987653
No 9
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.45 E-value=3.9e-08 Score=70.95 Aligned_cols=50 Identities=24% Similarity=0.608 Sum_probs=42.0
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhcC----CCCCCCcccccceEEEe
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNASVLVH 277 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~~v~v~ 277 (279)
+.....|.||++.... +++||+|. +|..|.... ..||+||.++.....+|
T Consensus 12 ~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 12 LTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 3456789999999999 88899999 999998753 78999999998766554
No 10
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.43 E-value=1.7e-07 Score=68.00 Aligned_cols=44 Identities=20% Similarity=0.504 Sum_probs=38.5
Q ss_pred cccccccccccccceEEecCCCcccchhhHhcC----CCCCCCcccccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~ 272 (279)
....|.||++...+.+++||+|. +|..|.... ..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence 45679999999999999999999 999998763 689999998864
No 11
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=1.8e-07 Score=67.64 Aligned_cols=46 Identities=22% Similarity=0.581 Sum_probs=39.1
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhcC-------CCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-------AVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l-------~~CPvCr~~i~~ 272 (279)
+.....|.||++...+.+++||||. +|..|.... ..||+||.++..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 4456789999999999888999999 999998653 379999998864
No 12
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.1e-07 Score=69.16 Aligned_cols=47 Identities=19% Similarity=0.574 Sum_probs=39.5
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccceE
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASV 274 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 274 (279)
.....|.||++...+.+++||+|. +|..|... ...||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 63 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF 63 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence 345689999999999999999998 89999865 478999999987433
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.38 E-value=1.1e-07 Score=67.99 Aligned_cols=48 Identities=23% Similarity=0.588 Sum_probs=41.0
Q ss_pred ccccccccccccc-eEEecCCCcccchhhHhc----CCCCCCCcccccceEEEe
Q 023682 229 QMICRACKAKEAS-VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVLVH 277 (279)
Q Consensus 229 ~~~C~iC~~~~~~-v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~v~ 277 (279)
...|.||++...+ ++++||||. +|..|... -..||+||.++...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 4579999999887 689999999 99999865 478999999999877654
No 14
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.36 E-value=2.2e-07 Score=68.12 Aligned_cols=46 Identities=26% Similarity=0.644 Sum_probs=38.7
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhc-----------CCCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----------VAVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----------l~~CPvCr~~i~~ 272 (279)
+.+...|.||++...+.+.+||||. +|..|... ...||+||.++..
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4456789999999888888899998 99999874 4589999998853
No 15
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.28 E-value=4.6e-07 Score=67.62 Aligned_cols=46 Identities=22% Similarity=0.599 Sum_probs=38.4
Q ss_pred cccccccccccccccc----eEEecCCCcccchhhHhcC-------CCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEAS----VLLMPCRHLCLCKDCDVLV-------AVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~----v~llPC~HlclC~~C~~~l-------~~CPvCr~~i~~ 272 (279)
+.+...|.||++...+ .+++||||. +|..|.... ..||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 4456789999998887 888999998 999998653 689999998653
No 16
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.27 E-value=3.1e-07 Score=65.35 Aligned_cols=45 Identities=22% Similarity=0.595 Sum_probs=36.7
Q ss_pred ccccccccccccccce-------EEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 227 NHQMICRACKAKEASV-------LLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v-------~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
.....|.||++..... +++||+|. +|..|... ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence 3556899999976654 88999997 99999865 3789999998763
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=8.5e-07 Score=64.42 Aligned_cols=49 Identities=27% Similarity=0.618 Sum_probs=39.9
Q ss_pred cccccccccccccccccceEEe-cCCCcccchhhHhc----CCCCCCCcccccce
Q 023682 224 ISRNHQMICRACKAKEASVLLM-PCRHLCLCKDCDVL----VAVCPVCQFVKNAS 273 (279)
Q Consensus 224 ~~~~~~~~C~iC~~~~~~v~ll-PC~HlclC~~C~~~----l~~CPvCr~~i~~~ 273 (279)
..+.....|.||++...+.+.+ ||+|. +|..|... ...||+||.++...
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 3455677899999998876665 99998 89999854 47999999988754
No 18
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.24 E-value=9.5e-07 Score=65.08 Aligned_cols=46 Identities=24% Similarity=0.584 Sum_probs=39.1
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhc----------CCCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----------VAVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----------l~~CPvCr~~i~~ 272 (279)
+.....|.||++...+-+++||+|. +|..|... ...||+||.++..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 3456789999999988889999998 99999765 5689999998864
No 19
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.23 E-value=4.3e-07 Score=63.70 Aligned_cols=49 Identities=20% Similarity=0.527 Sum_probs=38.7
Q ss_pred ccccccccccccc-------eEEecCCCcccchhhHhc----CCCCCCCccccc--ceEEEee
Q 023682 229 QMICRACKAKEAS-------VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN--ASVLVHL 278 (279)
Q Consensus 229 ~~~C~iC~~~~~~-------v~llPC~HlclC~~C~~~----l~~CPvCr~~i~--~~v~v~~ 278 (279)
...|.||++.... ++++||||. +|..|... ...||+||.++. ..+.+||
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 3579999997654 388899999 99999865 479999999987 4555554
No 20
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.22 E-value=7e-07 Score=64.05 Aligned_cols=46 Identities=26% Similarity=0.564 Sum_probs=37.0
Q ss_pred cccccccccccc---cceEEecCCCcccchhhHhc----CCCCCCCcccccceE
Q 023682 228 HQMICRACKAKE---ASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASV 274 (279)
Q Consensus 228 ~~~~C~iC~~~~---~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v 274 (279)
....|.||++.. ..++.+||+|. +|..|... -..||+||..+...+
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence 456799997643 56788999999 99999864 478999999987654
No 21
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.22 E-value=5.8e-07 Score=61.44 Aligned_cols=43 Identities=26% Similarity=0.596 Sum_probs=35.7
Q ss_pred ccccccccccccc----eEEecCCCcccchhhHhcC----CCCCCCcccccc
Q 023682 229 QMICRACKAKEAS----VLLMPCRHLCLCKDCDVLV----AVCPVCQFVKNA 272 (279)
Q Consensus 229 ~~~C~iC~~~~~~----v~llPC~HlclC~~C~~~l----~~CPvCr~~i~~ 272 (279)
...|.||++...+ ++++||+|. +|..|.... ..||+||.++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g 55 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG 55 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence 4579999997654 889999997 999998653 799999998753
No 22
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=7.3e-07 Score=65.73 Aligned_cols=46 Identities=24% Similarity=0.632 Sum_probs=39.0
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhc----------CCCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----------VAVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----------l~~CPvCr~~i~~ 272 (279)
+.....|.||++...+.+++||+|. +|..|... ...||+||..+..
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred ccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 3456789999999988888899998 99999765 5789999998874
No 23
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.21 E-value=8.5e-07 Score=65.09 Aligned_cols=46 Identities=33% Similarity=0.695 Sum_probs=36.1
Q ss_pred cccccccccccc---ccceEEecCCCcccchhhHhc----CCCCCCCcccccce
Q 023682 227 NHQMICRACKAK---EASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNAS 273 (279)
Q Consensus 227 ~~~~~C~iC~~~---~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~ 273 (279)
.....|.||++. +..++++||+|. +|..|... -..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence 345689999664 456677899997 99999864 37899999988653
No 24
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.20 E-value=6.6e-07 Score=85.78 Aligned_cols=49 Identities=24% Similarity=0.675 Sum_probs=42.8
Q ss_pred ccccccccccccceEEecCCCcccchhhHh-----cCCCCCCCcccccceEEEee
Q 023682 229 QMICRACKAKEASVLLMPCRHLCLCKDCDV-----LVAVCPVCQFVKNASVLVHL 278 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~llPC~HlclC~~C~~-----~l~~CPvCr~~i~~~v~v~~ 278 (279)
...|.||++...+.+++||||. +|..|.. ....||+||.++.....+++
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v 385 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 385 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSC
T ss_pred CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEec
Confidence 3689999999999999999999 6999986 35899999999998876653
No 25
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=8.2e-07 Score=64.54 Aligned_cols=49 Identities=22% Similarity=0.560 Sum_probs=38.3
Q ss_pred cccccccccccccc---cceEEecCCCcccchhhHhc----CCCCCCCcccccceEE
Q 023682 226 RNHQMICRACKAKE---ASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNASVL 275 (279)
Q Consensus 226 ~~~~~~C~iC~~~~---~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~~v~ 275 (279)
......|.||++.. ..+.++||+|. +|..|... -..||+||.++.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 34556899999864 45667799999 99999865 3689999999876543
No 26
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.17 E-value=1.2e-06 Score=60.03 Aligned_cols=43 Identities=23% Similarity=0.659 Sum_probs=35.4
Q ss_pred cccccccccccccc---eEEec-CCCcccchhhHhc----CCCCCCCccccc
Q 023682 228 HQMICRACKAKEAS---VLLMP-CRHLCLCKDCDVL----VAVCPVCQFVKN 271 (279)
Q Consensus 228 ~~~~C~iC~~~~~~---v~llP-C~HlclC~~C~~~----l~~CPvCr~~i~ 271 (279)
+...|.||++.... ++.+| |+|. +|..|... ...||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence 45679999998666 77787 9998 99999865 378999998764
No 27
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.14 E-value=5.5e-07 Score=64.65 Aligned_cols=44 Identities=23% Similarity=0.601 Sum_probs=36.1
Q ss_pred cccccccccccccce-------EEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEASV-------LLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v-------~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
+...|.||++..... +++||||. +|..|... -..||+||.++..
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence 456799999876553 88899998 99999854 4799999999874
No 28
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.14 E-value=2.1e-06 Score=62.83 Aligned_cols=47 Identities=21% Similarity=0.624 Sum_probs=39.0
Q ss_pred cccccccccccccccccceEEec-CCCcccchhhHhcC------CCCCCCccccc
Q 023682 224 ISRNHQMICRACKAKEASVLLMP-CRHLCLCKDCDVLV------AVCPVCQFVKN 271 (279)
Q Consensus 224 ~~~~~~~~C~iC~~~~~~v~llP-C~HlclC~~C~~~l------~~CPvCr~~i~ 271 (279)
..+.....|.||++...+-+.+| |||. +|..|.... ..||+||.++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 10 DPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred ccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 34456778999999999989999 9998 999998552 58999999753
No 29
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.11 E-value=7.8e-07 Score=62.03 Aligned_cols=44 Identities=32% Similarity=0.711 Sum_probs=37.4
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc-CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL-VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-l~~CPvCr~~i~~ 272 (279)
+...|.||++...+-+++||||. +|..|... ...||+||..+..
T Consensus 5 ~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEASGMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSSSSSCSSCCSSSSC
T ss_pred cCCCceEeCCccCCeEEcCCCCc-ccHHHHccCCCCCCcCCcEeec
Confidence 34579999999999899999998 89999865 4689999998763
No 30
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=2e-06 Score=61.33 Aligned_cols=46 Identities=22% Similarity=0.460 Sum_probs=38.5
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhc-----CCCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 272 (279)
+.....|.||++...+.+.+||||. +|..|... ...||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3456789999999888888899999 99999864 3589999998764
No 31
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.06 E-value=2.1e-06 Score=64.90 Aligned_cols=45 Identities=22% Similarity=0.696 Sum_probs=38.0
Q ss_pred ccccccccccccccccceEEec-CCCcccchhhHhcC------CCCCCCcccc
Q 023682 225 SRNHQMICRACKAKEASVLLMP-CRHLCLCKDCDVLV------AVCPVCQFVK 270 (279)
Q Consensus 225 ~~~~~~~C~iC~~~~~~v~llP-C~HlclC~~C~~~l------~~CPvCr~~i 270 (279)
.+.....|.||++-..+-+.+| |||. +|..|.... ..||+||.++
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~ 60 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQND 60 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcC
Confidence 3456678999999999888899 9999 999997542 5899999986
No 32
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.06 E-value=2.1e-06 Score=59.11 Aligned_cols=40 Identities=28% Similarity=0.655 Sum_probs=33.8
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhc-------CCCCCCC
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-------VAVCPVC 266 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-------l~~CPvC 266 (279)
+.....|.||++...+.+++||+|. +|..|... ...||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence 4456789999999998888999999 99999754 2689998
No 33
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.04 E-value=9.5e-07 Score=66.25 Aligned_cols=47 Identities=19% Similarity=0.547 Sum_probs=37.0
Q ss_pred ccccccccccccc--cceEEec--CCCcccchhhHhcC-----CCCCCCcccccceE
Q 023682 227 NHQMICRACKAKE--ASVLLMP--CRHLCLCKDCDVLV-----AVCPVCQFVKNASV 274 (279)
Q Consensus 227 ~~~~~C~iC~~~~--~~v~llP--C~HlclC~~C~~~l-----~~CPvCr~~i~~~v 274 (279)
.+...|.||++.. .++.++| |||. +|..|...+ ..||+||.++....
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSCS
T ss_pred ccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCCc
Confidence 4566899999965 3456666 9998 999998664 48999999987643
No 34
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.02 E-value=2.7e-06 Score=64.81 Aligned_cols=44 Identities=27% Similarity=0.715 Sum_probs=36.4
Q ss_pred cccccccccccccc---eEEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEAS---VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~---v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
....|.||++.... ++.+||+|. +|..|... -..||+||..+..
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence 45689999987655 888999997 99999865 4789999998864
No 35
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.01 E-value=3.7e-06 Score=61.38 Aligned_cols=44 Identities=23% Similarity=0.599 Sum_probs=35.5
Q ss_pred cccccccccccc---cceEEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 228 HQMICRACKAKE---ASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~---~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
....|.||++.. ..++.+||+|. +|..|... -..||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence 456799999654 34688899998 99999865 4789999998865
No 36
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.99 E-value=1.7e-06 Score=61.43 Aligned_cols=43 Identities=28% Similarity=0.668 Sum_probs=33.1
Q ss_pred ccccccccc----cccc-eEEecCCCcccchhhHhcC-----CCCCCCcccccc
Q 023682 229 QMICRACKA----KEAS-VLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNA 272 (279)
Q Consensus 229 ~~~C~iC~~----~~~~-v~llPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 272 (279)
...|.||++ ++.. ++++||||. +|..|.... ..||+||.++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 347999999 2322 266899998 999998654 579999998863
No 37
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=97.96 E-value=2.6e-06 Score=68.17 Aligned_cols=44 Identities=27% Similarity=0.646 Sum_probs=37.8
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc-----CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 272 (279)
....|.||++...+-+.+||||. +|..|... ...||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45689999999999898999998 89999854 3489999999875
No 38
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=97.94 E-value=3.9e-06 Score=66.15 Aligned_cols=45 Identities=27% Similarity=0.623 Sum_probs=38.2
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhcC-----CCCCCCcccccc
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNA 272 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 272 (279)
.....|.||++...+-+.+||||. +|..|.... ..||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 456789999999998888899998 999998653 489999998753
No 39
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=97.87 E-value=3.1e-06 Score=65.56 Aligned_cols=46 Identities=26% Similarity=0.444 Sum_probs=38.7
Q ss_pred cccccccccccccccceEE-ecCCCcccchhhHhc----C-CCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLL-MPCRHLCLCKDCDVL----V-AVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~l-lPC~HlclC~~C~~~----l-~~CPvCr~~i~~ 272 (279)
+.+...|.||++...+-+. +||||. +|..|... . ..||+||.++..
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 3456789999999998888 999999 89999865 2 589999998753
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.87 E-value=1.9e-06 Score=67.14 Aligned_cols=44 Identities=23% Similarity=0.587 Sum_probs=36.9
Q ss_pred cccccccccccccceEEecCCCcccchhhHhcC-------CCCCCCcccccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-------AVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l-------~~CPvCr~~i~~ 272 (279)
....|.||++...+.+.+||||. +|..|.... ..||+||.++..
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 45689999999888888899998 899998652 379999998764
No 41
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=97.86 E-value=4.6e-06 Score=65.13 Aligned_cols=46 Identities=26% Similarity=0.637 Sum_probs=38.9
Q ss_pred cccccccccccccccceEEe-cCCCcccchhhHhcC----CCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLM-PCRHLCLCKDCDVLV----AVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~ll-PC~HlclC~~C~~~l----~~CPvCr~~i~~ 272 (279)
+.....|.||++...+-+.+ ||||. +|..|.... ..||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred cCCcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence 34567899999998888887 99998 899998653 789999999875
No 42
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=1.1e-05 Score=56.65 Aligned_cols=40 Identities=25% Similarity=0.672 Sum_probs=33.9
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhc-------CCCCCCC
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-------VAVCPVC 266 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-------l~~CPvC 266 (279)
+.....|.||++...+.+++||||. +|..|... ...||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence 4456789999999999888999999 99999754 2489998
No 43
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=97.84 E-value=4.7e-06 Score=63.96 Aligned_cols=45 Identities=20% Similarity=0.513 Sum_probs=37.7
Q ss_pred ccccccccccccccceEEe-cCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 227 NHQMICRACKAKEASVLLM-PCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~ll-PC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
.....|.||++...+-+.+ ||||. +|..|... -..||+||.++..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4566899999998887777 99998 99999755 3689999998874
No 44
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.82 E-value=1.1e-05 Score=59.08 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhc-----CCCCCCCcccccc
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 272 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 272 (279)
.....|.||++-..+-+.+||||. +|..|... ...||+|+.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 356789999999888888999999 99999754 3679999999864
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=97.81 E-value=8.4e-06 Score=68.27 Aligned_cols=45 Identities=22% Similarity=0.594 Sum_probs=37.6
Q ss_pred cccccccccccccccceEEe-cCCCcccchhhHhc-----CCCCCCCccccc
Q 023682 226 RNHQMICRACKAKEASVLLM-PCRHLCLCKDCDVL-----VAVCPVCQFVKN 271 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~ll-PC~HlclC~~C~~~-----l~~CPvCr~~i~ 271 (279)
+.....|.||++...+.+.+ ||||. +|..|... ...||+||.++.
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCC
Confidence 44567899999999887776 99998 89999865 357999999884
No 46
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=97.80 E-value=6.4e-06 Score=68.71 Aligned_cols=45 Identities=24% Similarity=0.595 Sum_probs=38.1
Q ss_pred cccccccccccccceEEecCCCcccchhhHhcC-----CCCCCCcccccce
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNAS 273 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l-----~~CPvCr~~i~~~ 273 (279)
....|.||++...+-+.+||||. +|..|.... ..||+||.++...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 34579999999999999999998 899998652 4799999998754
No 47
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.75 E-value=5.5e-06 Score=65.75 Aligned_cols=44 Identities=23% Similarity=0.594 Sum_probs=38.1
Q ss_pred ccccccccccccccceEEe-cCCCcccchhhHhcC--CCCCCCccccc
Q 023682 227 NHQMICRACKAKEASVLLM-PCRHLCLCKDCDVLV--AVCPVCQFVKN 271 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~ll-PC~HlclC~~C~~~l--~~CPvCr~~i~ 271 (279)
.....|.||++...+-+++ ||||. +|..|.... ..||+|+.++.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIGTGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTTTBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhcCCCcCCCCcCc
Confidence 4567899999999988888 99998 899998764 58999999875
No 48
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=97.73 E-value=1.8e-05 Score=62.82 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=39.1
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhcC-----CCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 272 (279)
+.....|.||++...+-+.+||||. +|..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4456789999999998888999998 999998652 499999998875
No 49
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.62 E-value=1.4e-05 Score=62.67 Aligned_cols=42 Identities=26% Similarity=0.454 Sum_probs=32.5
Q ss_pred ccccccccccc------------------ceEEecCCCcccchhhHhc---------CCCCCCCcccccc
Q 023682 230 MICRACKAKEA------------------SVLLMPCRHLCLCKDCDVL---------VAVCPVCQFVKNA 272 (279)
Q Consensus 230 ~~C~iC~~~~~------------------~v~llPC~HlclC~~C~~~---------l~~CPvCr~~i~~ 272 (279)
..|.||++... .+.++||+|. +|..|... -..||+||..+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 47999988752 3448899998 99999643 3589999988753
No 50
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=97.59 E-value=1.9e-05 Score=62.25 Aligned_cols=46 Identities=24% Similarity=0.613 Sum_probs=38.9
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhc-----CCCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 272 (279)
+.....|.||++...+.+.+||||. +|..|... ...||+||.++..
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 3456789999999999888999999 89999754 3689999999764
No 51
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.52 E-value=4.2e-05 Score=60.52 Aligned_cols=50 Identities=20% Similarity=0.514 Sum_probs=39.6
Q ss_pred cccccccccccccce-------EEecCCCcccchhhHhc----CCCCCCCccccc--ceEEEee
Q 023682 228 HQMICRACKAKEASV-------LLMPCRHLCLCKDCDVL----VAVCPVCQFVKN--ASVLVHL 278 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v-------~llPC~HlclC~~C~~~----l~~CPvCr~~i~--~~v~v~~ 278 (279)
+...|.||++..... +++||||. +|..|... ...||+||.++. ..+.+|+
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence 456799999876653 88899999 99999864 589999999876 4455654
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=97.47 E-value=3.9e-05 Score=60.67 Aligned_cols=44 Identities=23% Similarity=0.601 Sum_probs=36.0
Q ss_pred cccccccccccccce-------EEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEASV-------LLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v-------~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
+...|.||++...+- +++||||. +|..|... -..||+|+..+..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 60 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCcc
Confidence 346799999876554 88899997 99999855 3699999998874
No 53
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.47 E-value=0.00031 Score=60.55 Aligned_cols=44 Identities=7% Similarity=-0.138 Sum_probs=36.7
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc-----CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 272 (279)
....|.||++-..+=|++||||. +|..|... -..||+|+.++..
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 45689999999999888999997 99999644 1369999998764
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=5.7e-05 Score=56.26 Aligned_cols=30 Identities=30% Similarity=0.506 Sum_probs=23.5
Q ss_pred eEEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 242 VLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 242 v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
+++.+|+|. ++..|... -..||+||.++..
T Consensus 43 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 43 VVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp EEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred EEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence 344459999 99999864 3789999998753
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=97.26 E-value=3.5e-05 Score=63.62 Aligned_cols=45 Identities=20% Similarity=0.508 Sum_probs=37.5
Q ss_pred ccccccccccccccccceEEecCCCcccchhhHhcC-----CCCCCCcccc
Q 023682 225 SRNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVK 270 (279)
Q Consensus 225 ~~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l-----~~CPvCr~~i 270 (279)
.+.....|.||++-..+-+.+||||. +|..|.... ..||+||.++
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence 34567789999998888788899999 999998653 4899999975
No 56
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=97.21 E-value=0.0002 Score=59.93 Aligned_cols=46 Identities=24% Similarity=0.503 Sum_probs=39.2
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhcC-----CCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVLV-----AVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~l-----~~CPvCr~~i~~ 272 (279)
+.+...|.||++-..+-+.+||||. +|..|.... ..||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence 3466789999999888888999998 899998653 499999998875
No 57
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.01 E-value=0.00038 Score=54.90 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=25.2
Q ss_pred ceEEecCCCcccchhhHhc----CCCCCCCccccc
Q 023682 241 SVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN 271 (279)
Q Consensus 241 ~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~ 271 (279)
.++++||+|. ++..|... -..||+||..+.
T Consensus 67 ~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 67 TVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred eEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence 3788999998 99999865 478999999853
No 58
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.99 E-value=0.00054 Score=51.54 Aligned_cols=45 Identities=4% Similarity=-0.001 Sum_probs=38.6
Q ss_pred ccccccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 227 NHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
.....|.||++-..+=|.+||||. +|..|... ...||+|+.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 456789999999999999999998 99999654 4799999998764
No 59
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=96.96 E-value=0.00044 Score=61.18 Aligned_cols=44 Identities=7% Similarity=-0.127 Sum_probs=37.2
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc-----CCCCCCCcccccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~ 272 (279)
....|.||++-..+=|.+||||. +|..|... -..||+|+.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 45689999999999999999998 99999754 2349999998863
No 60
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=96.95 E-value=0.00058 Score=53.14 Aligned_cols=46 Identities=4% Similarity=-0.010 Sum_probs=39.1
Q ss_pred cccccccccccccccceEEecCCCcccchhhHhc----CCCCCCCcccccc
Q 023682 226 RNHQMICRACKAKEASVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
+.....|.||++-..+=|++||||. +|..|... ...||+|+.++..
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred CcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3456789999999999999999998 99999754 3689999998764
No 61
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=96.90 E-value=0.00072 Score=52.41 Aligned_cols=45 Identities=4% Similarity=-0.035 Sum_probs=38.3
Q ss_pred ccccccccccccccceEEecCC-CcccchhhHhc----CCCCCCCcccccc
Q 023682 227 NHQMICRACKAKEASVLLMPCR-HLCLCKDCDVL----VAVCPVCQFVKNA 272 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~-HlclC~~C~~~----l~~CPvCr~~i~~ 272 (279)
.....|.||++-..+=|++||| |. +|..|... ...||+|+.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3567899999999999999999 98 99999754 3689999998764
No 62
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=96.43 E-value=0.00049 Score=55.41 Aligned_cols=41 Identities=22% Similarity=0.358 Sum_probs=0.0
Q ss_pred ccccccccccc------------------ceEEecCCCcccchhhHhc----CCCCCCCccccc
Q 023682 230 MICRACKAKEA------------------SVLLMPCRHLCLCKDCDVL----VAVCPVCQFVKN 271 (279)
Q Consensus 230 ~~C~iC~~~~~------------------~v~llPC~HlclC~~C~~~----l~~CPvCr~~i~ 271 (279)
..|.||++.-. .++++||+|. ++..|... -..||+||.++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence 46888876533 3556799999 99999865 378999999853
No 63
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.28 E-value=0.0033 Score=47.02 Aligned_cols=44 Identities=30% Similarity=0.711 Sum_probs=33.2
Q ss_pred cccccccccccc--cceEEecCC-----CcccchhhHhc------CCCCCCCcccccc
Q 023682 228 HQMICRACKAKE--ASVLLMPCR-----HLCLCKDCDVL------VAVCPVCQFVKNA 272 (279)
Q Consensus 228 ~~~~C~iC~~~~--~~v~llPC~-----HlclC~~C~~~------l~~CPvCr~~i~~ 272 (279)
....|.||++.. .+.+++||+ |. +-..|... -..||+|+..+..
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 345799999643 345678997 98 89999754 2589999998754
No 64
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=96.02 E-value=0.004 Score=48.95 Aligned_cols=44 Identities=27% Similarity=0.695 Sum_probs=31.4
Q ss_pred cccccccccc-ceEEecCCCcccchhhHhc-----CCCCCCCcccccceEE
Q 023682 231 ICRACKAKEA-SVLLMPCRHLCLCKDCDVL-----VAVCPVCQFVKNASVL 275 (279)
Q Consensus 231 ~C~iC~~~~~-~v~llPC~HlclC~~C~~~-----l~~CPvCr~~i~~~v~ 275 (279)
.|..|.---. -.-++||.|. +|.+|+.. ...||.|+.+|...=.
T Consensus 3 fC~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 3556654333 2346899995 99999943 5799999999876543
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.81 E-value=0.0047 Score=47.01 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=33.8
Q ss_pred cccccccccccccceEEec-CCCcccchhhHhc----------CCCCCC--Cccc
Q 023682 228 HQMICRACKAKEASVLLMP-CRHLCLCKDCDVL----------VAVCPV--CQFV 269 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llP-C~HlclC~~C~~~----------l~~CPv--Cr~~ 269 (279)
....|.||++-..+=|.+| |||. +|..|... ...||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4568999999999988897 9998 99999644 238999 9854
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=95.45 E-value=0.0029 Score=47.88 Aligned_cols=40 Identities=20% Similarity=0.565 Sum_probs=29.3
Q ss_pred cccccccccccc--ce-EEecCCCcccchhhHhc------------CCCCCC--Cccc
Q 023682 229 QMICRACKAKEA--SV-LLMPCRHLCLCKDCDVL------------VAVCPV--CQFV 269 (279)
Q Consensus 229 ~~~C~iC~~~~~--~v-~llPC~HlclC~~C~~~------------l~~CPv--Cr~~ 269 (279)
...|.||++... .+ .+.||+|. +|..|-.. .-.||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 457999998643 23 33489998 99999533 137999 9987
No 67
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.99 E-value=0.67 Score=40.08 Aligned_cols=74 Identities=16% Similarity=0.211 Sum_probs=53.9
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----H
Q 023682 99 KVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESV----V 174 (279)
Q Consensus 99 ~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~----a 174 (279)
+.+.+.|+..+.| ++-.++.| | .+.|.||+.+.+++.+|..++.++..|.+.|+.+....... .
T Consensus 23 ~q~~~~le~El~E-FqesSrEL----E-------~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~ 90 (189)
T 2v71_A 23 KQSFQEARDELVE-FQEGSREL----E-------AELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQV 90 (189)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHH----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHH----H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655 45555444 3 46678999999999999999999999999999887766555 5
Q ss_pred HHHHHHHHHH
Q 023682 175 NLLKSNLQQA 184 (279)
Q Consensus 175 ~~Lr~~Lqq~ 184 (279)
+.|...+.++
T Consensus 91 ~~Lq~el~~l 100 (189)
T 2v71_A 91 SVLEDDLSQT 100 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.02 Score=52.15 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=35.8
Q ss_pred cccccccccccccccceEE-ecCCCcccchhhHhcC------CCCCC--Cccccc
Q 023682 226 RNHQMICRACKAKEASVLL-MPCRHLCLCKDCDVLV------AVCPV--CQFVKN 271 (279)
Q Consensus 226 ~~~~~~C~iC~~~~~~v~l-lPC~HlclC~~C~~~l------~~CPv--Cr~~i~ 271 (279)
......|.||+.-..+=|. ..|||. +|..|.... ..||+ |+..+.
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred CceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3456789999998887665 599997 999998652 36999 998764
No 69
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=93.33 E-value=0.28 Score=32.36 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 134 EKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 134 eKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
+.|...-.+..+|+|||+++..|..|++..+.+-+
T Consensus 7 eLE~r~k~le~~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 7 ELENRVKDLENKNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 44556667788999999999999999998877643
No 70
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=91.64 E-value=0.043 Score=42.66 Aligned_cols=47 Identities=23% Similarity=0.685 Sum_probs=37.2
Q ss_pred ccccccccccccccceEEecCC-CcccchhhHhcC----CCCCCCcccccceEEE
Q 023682 227 NHQMICRACKAKEASVLLMPCR-HLCLCKDCDVLV----AVCPVCQFVKNASVLV 276 (279)
Q Consensus 227 ~~~~~C~iC~~~~~~v~llPC~-HlclC~~C~~~l----~~CPvCr~~i~~~v~v 276 (279)
....-|+.|+-...+.| -|. |+ +|..|-..| ..||+|..+....|+|
T Consensus 26 ~G~~nCKsCWf~~k~LV--~C~dHY-LCl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 26 LGPQFCKSCWFENKGLV--ECNNHY-LCLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp SCCCCCCSSCSCCSSEE--ECSSCE-EEHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred cCcccChhhccccCCee--eecchh-hHHHHHHHHHhhccCCcccCCcCCcceec
Confidence 34557999999888655 465 77 999999886 8999999988776654
No 71
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=91.28 E-value=0.11 Score=36.55 Aligned_cols=44 Identities=18% Similarity=0.462 Sum_probs=29.5
Q ss_pred cccccccccccccceEEecCCCc----ccchhhHhc------CCCCCCCccccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHL----CLCKDCDVL------VAVCPVCQFVKN 271 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~Hl----clC~~C~~~------l~~CPvCr~~i~ 271 (279)
+...|.||++....-+++||.+. .+=..|... -..||+|+..+.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45679999987666678998642 122334322 478999998764
No 72
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=88.75 E-value=0.19 Score=35.23 Aligned_cols=42 Identities=14% Similarity=0.105 Sum_probs=35.2
Q ss_pred cccccccccccceEEe-cCCCcccchhhHhcC----CCCCCCcccccc
Q 023682 230 MICRACKAKEASVLLM-PCRHLCLCKDCDVLV----AVCPVCQFVKNA 272 (279)
Q Consensus 230 ~~C~iC~~~~~~v~ll-PC~HlclC~~C~~~l----~~CPvCr~~i~~ 272 (279)
..|.+|++-..+-|+. ||||. ++..|.... .+||+++.++..
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~ 50 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSI 50 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCG
T ss_pred EEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCCh
Confidence 4799999988888888 99998 899997652 579999988753
No 73
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.30 E-value=2 Score=40.92 Aligned_cols=59 Identities=20% Similarity=0.175 Sum_probs=52.4
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQG 188 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~~ 188 (279)
-++.++++||+.++++..+|++.++++..|.+.+.......+..-..|+++++.+....
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnI 61 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNI 61 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSE
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCe
Confidence 35778999999999999999999999999999999999999998899999999887653
No 74
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=86.20 E-value=24 Score=33.97 Aligned_cols=66 Identities=9% Similarity=0.018 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 119 SFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 119 ~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
.-+..+...+..+...++.++.+..+...++++..+++..|...|+..-.+.......++.+++..
T Consensus 505 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~ 570 (597)
T 3oja_B 505 DNLNKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 334555555556666666666777777767777777777777777777777666666555554444
No 75
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.88 E-value=15 Score=35.33 Aligned_cols=37 Identities=8% Similarity=0.055 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 151 ERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 151 Erl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
+.+..+....+.=+....+-....+.++.++.++...
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333444444445566677666654
No 76
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.63 E-value=3.2 Score=29.37 Aligned_cols=37 Identities=24% Similarity=0.247 Sum_probs=29.8
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
..+.+.+++.+..+|.+|+..+.+|..|.+.|..+-.
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~ 61 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLIE 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445578888999999999999999999988876543
No 77
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=83.69 E-value=9.8 Score=35.87 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=13.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHH
Q 023682 93 EFDQYIKVQEEYLAKGVQDMKQR 115 (279)
Q Consensus 93 EiD~~i~~q~e~lr~~l~e~r~r 115 (279)
.+.++|+-+.++.+..+.+.|++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~ 419 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEAQ 419 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHHH
Confidence 44555666666666666665554
No 78
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.52 E-value=8.7 Score=28.76 Aligned_cols=23 Identities=17% Similarity=0.411 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 023682 146 NRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 146 ~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
-..|...+.++..|...|+.+-.
T Consensus 50 ~~~L~~en~qLk~E~~~wq~Rl~ 72 (81)
T 2jee_A 50 REELERENNHLKEQQNGWQERLQ 72 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466677788888888887654
No 79
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=81.23 E-value=24 Score=29.81 Aligned_cols=98 Identities=13% Similarity=0.171 Sum_probs=53.9
Q ss_pred hHHHHHHhhHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023682 81 DNVRTELDRQKEEFDQYIKVQEE---YLAKGVQDMKQRHMASFLSAIEKGL---AKKLQEKDMEIENMNRKNRELIERIK 154 (279)
Q Consensus 81 ~~l~~~l~~q~~EiD~~i~~q~e---~lr~~l~e~r~rh~~~ll~ave~~~---~~rLreKe~Eie~~~kk~~eLeErl~ 154 (279)
.+=..+|++|..|+...++.++| |||+...|..+.- ...|..+ -.+++..+..-..+.+.++.|...
T Consensus 5 neKi~~LekQL~E~n~kLk~EsE~~~rlkK~~tEl~k~~-----~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~-- 77 (168)
T 3o0z_A 5 NEKLSQLQKQLEEANDLLRTESDTAVRLRKSHTEMSKSI-----SQLESLNRELQERNRILENSKSQTDKDYYQLQAI-- 77 (168)
T ss_dssp -----CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 33456799999999999999988 8888777765432 2222211 123333333444445555555533
Q ss_pred HHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHh
Q 023682 155 QMAAEAQNWHYRA---KYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 155 ql~~E~qaWq~~A---~~nea~a~~Lr~~Lqq~~~ 186 (279)
|..|-..|.... .+-+..+.+|...|..+..
T Consensus 78 -L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~ 111 (168)
T 3o0z_A 78 -LEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH 111 (168)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333 3555566677776666543
No 80
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=81.13 E-value=15 Score=27.33 Aligned_cols=33 Identities=24% Similarity=0.493 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHH
Q 023682 119 SFLSAIEKGLAKKLQEK----DMEIENMNRKNRELIE 151 (279)
Q Consensus 119 ~ll~ave~~~~~rLreK----e~Eie~~~kk~~eLeE 151 (279)
+|++|||..+-+||||+ .+||+.+++=..||.+
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~ 39 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKK 39 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 57888898888888875 4788888777766654
No 81
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=81.01 E-value=17 Score=28.24 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=24.4
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 129 AKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHY 165 (279)
Q Consensus 129 ~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~ 165 (279)
..++|+.+.||++++..|. .|..|+..|..
T Consensus 64 ~~~v~eLe~everL~~ENq-------~L~~e~~~~~~ 93 (104)
T 3s9g_A 64 DARVRELELELDRLRAENL-------QLLTENELHRQ 93 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHH-------HHHHHHHhhcc
Confidence 5788999999999988885 55688888875
No 82
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=80.18 E-value=1.3 Score=32.78 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
+|++-++-++.||++++.+|..||...+..|-
T Consensus 15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~as 46 (78)
T 1dip_A 15 EEVEILKEQIRELVEKNSQLERENTLLKTLAS 46 (78)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 58888999999999999999999987655443
No 83
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=79.24 E-value=30 Score=29.72 Aligned_cols=57 Identities=9% Similarity=0.173 Sum_probs=48.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQG 188 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~~ 188 (279)
+-..+.||..+...+..|..+++.|.+.++...+..+-..+...-+...+.+++...
T Consensus 90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~ 146 (189)
T 2v71_A 90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 455677888999999999999999999999999999988888888888888887654
No 84
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=78.82 E-value=2.6 Score=26.59 Aligned_cols=23 Identities=17% Similarity=0.510 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 023682 134 EKDMEIENMNRKNRELIERIKQM 156 (279)
Q Consensus 134 eKe~Eie~~~kk~~eLeErl~ql 156 (279)
+-..+|+.++|+|+-|++.++.|
T Consensus 11 a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 11 THQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHhhHHHHHHHHHHHHHHHHhc
Confidence 34578999999999999999865
No 85
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=78.48 E-value=5.4 Score=31.58 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023682 143 NRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 182 (279)
Q Consensus 143 ~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lq 182 (279)
.|++.+|...+.+|..|...|+.+.......+++..+.|+
T Consensus 2 Ek~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq 41 (111)
T 2v66_B 2 EQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLE 41 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999998887766555444443
No 86
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=78.24 E-value=6.2 Score=28.95 Aligned_cols=34 Identities=18% Similarity=0.286 Sum_probs=26.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHY 165 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~ 165 (279)
||+||+-|+.+.+++.+.++-|+.|..|.+.++.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7888888888888888888888888777766543
No 87
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.91 E-value=3.6 Score=30.00 Aligned_cols=45 Identities=18% Similarity=0.287 Sum_probs=30.1
Q ss_pred cccccccccccccc-eEEecCCCcccchhhHhc------CCCCCCCcccccce
Q 023682 228 HQMICRACKAKEAS-VLLMPCRHLCLCKDCDVL------VAVCPVCQFVKNAS 273 (279)
Q Consensus 228 ~~~~C~iC~~~~~~-v~llPC~HlclC~~C~~~------l~~CPvCr~~i~~~ 273 (279)
....|.||++--.. .....|+|. +=..|..+ -..||+|+......
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~ 65 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 65 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred CCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence 45679999875542 222267776 66777753 27899999887643
No 88
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=74.30 E-value=25 Score=26.42 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHYRA 167 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A 167 (279)
.+++.+.+.|..|+..|.+|..|.+.+..+-
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll 73 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777777777777776666555443
No 89
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=74.12 E-value=4.3 Score=25.83 Aligned_cols=22 Identities=41% Similarity=0.737 Sum_probs=18.2
Q ss_pred HHHHhhHHHHHHHHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKNRELIE 151 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeE 151 (279)
+-+-+|++||.+++.+|.+|.|
T Consensus 14 k~ie~KdeeIa~Lk~eN~eL~E 35 (37)
T 1t6f_A 14 KEIEQKDNEIARLKKENKELAE 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHHh
Confidence 3466899999999999988865
No 90
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=73.03 E-value=32 Score=27.06 Aligned_cols=85 Identities=11% Similarity=0.201 Sum_probs=59.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023682 98 IKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLL 177 (279)
Q Consensus 98 i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~L 177 (279)
|+..+++|...+++-+..+..+- .-.....-..+.||..+...+-.|..+++.|.+.|+...+.++...+...-+
T Consensus 8 L~~~~~~L~~E~e~~k~K~~~~~-----~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 8 LQADNQRLKYEVEALKEKLEHQY-----AQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 44555666666655554443221 1111222334568899999999999999999999999999998888877777
Q ss_pred HHHHHHHHhc
Q 023682 178 KSNLQQAISQ 187 (279)
Q Consensus 178 r~~Lqq~~~~ 187 (279)
.+.+.+++..
T Consensus 83 E~k~n~aiEr 92 (111)
T 2v66_B 83 EQRLNQAIER 92 (111)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877764
No 91
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=73.02 E-value=17 Score=25.17 Aligned_cols=31 Identities=10% Similarity=0.281 Sum_probs=17.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
+.+.+.+++.+...|.+|...+..|..|...
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~ 54 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQ 54 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566666666665555555443
No 92
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=71.98 E-value=25 Score=25.46 Aligned_cols=47 Identities=17% Similarity=0.187 Sum_probs=30.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023682 128 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVV 174 (279)
Q Consensus 128 ~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a 174 (279)
...+|++|.+||++++.-.-.|.-.+-.-..=+...++.+.-.+...
T Consensus 8 L~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~ 54 (74)
T 2q6q_A 8 LNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKI 54 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34678999999999998887777666555544444444443333333
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=71.60 E-value=61 Score=30.44 Aligned_cols=55 Identities=15% Similarity=0.072 Sum_probs=42.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
..+.+.|.+++++......+.++++..|+..-+....+........+..++.+..
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 423 YVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 4455667777777777788888888888888888888888877777777776654
No 94
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=71.38 E-value=24 Score=30.72 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023682 102 EEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLL 177 (279)
Q Consensus 102 ~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~L 177 (279)
.++-|..|+|.||. +|-.+++ |.+.+.+++..|++.+..+..|+...+.+|.....+|..+
T Consensus 95 se~YWk~lAE~RR~---AL~eaLe------------EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi 155 (209)
T 2wvr_A 95 SSQYWKEVAEKRRK---ALYEALK------------ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELI 155 (209)
T ss_dssp CTTHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH---HHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778999998874 3444554 5566666666777777777777777777776665555443
No 95
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=70.54 E-value=18 Score=27.91 Aligned_cols=54 Identities=11% Similarity=0.177 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 023682 119 SFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQ 183 (279)
Q Consensus 119 ~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq 183 (279)
..++-+...|-.-.++.+.||.++.+++..||.- ..+...|+.+ |+.|.++|+.
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~i----qs~aK~LRnK-------A~~L~~eLe~ 89 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKM----QNNSKLLRNK-------AVQLESELEN 89 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHH-------HHHHHHHHHH
Confidence 3334444444455677888999999999877643 3444455444 4446666654
No 96
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=69.95 E-value=13 Score=24.42 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=25.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 129 AKKLQEKDMEIENMNRKNRELIERIKQMAAEA 160 (279)
Q Consensus 129 ~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~ 160 (279)
.+++---+.||++.+.++.+|+.+++.|...+
T Consensus 8 ~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a 39 (42)
T 2l5g_B 8 IQNMDRVDREITMVEQQISKLKKKQQQLEEEA 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555668899999999999999999887654
No 97
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=69.60 E-value=1.3 Score=42.02 Aligned_cols=46 Identities=22% Similarity=0.363 Sum_probs=31.2
Q ss_pred cccccccccccccc------eE--EecCCCcccchhhHhc---------------CCCCCCCcccccceE
Q 023682 228 HQMICRACKAKEAS------VL--LMPCRHLCLCKDCDVL---------------VAVCPVCQFVKNASV 274 (279)
Q Consensus 228 ~~~~C~iC~~~~~~------v~--llPC~HlclC~~C~~~---------------l~~CPvCr~~i~~~v 274 (279)
....|.||++.... .+ -.+|+|. +=..|-.. ...||+|+.+|..+.
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf 375 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSF 375 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGG
T ss_pred CCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccH
Confidence 45679999975443 11 1368887 77777532 157999999987654
No 98
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=69.48 E-value=41 Score=26.79 Aligned_cols=86 Identities=19% Similarity=0.339 Sum_probs=47.4
Q ss_pred hhhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHH
Q 023682 79 LADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMK------QRHMASFLSAIEKGLAK---KLQEKDMEIENMNRKNREL 149 (279)
Q Consensus 79 ~~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r------~rh~~~ll~ave~~~~~---rLreKe~Eie~~~kk~~eL 149 (279)
.-|+|.++- .=..+-++|+.|..+-+.+|.+.- .+-+..|-.+++...++ ++.+.+.||..++.++.+.
T Consensus 13 C~dGLrAq~--ECrN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a 90 (121)
T 3mq7_A 13 ARDGLRAVM--EARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDA 90 (121)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555442 234677778777666666665433 12223344444443332 4566666666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023682 150 IERIKQMAAEAQNWHYR 166 (279)
Q Consensus 150 eErl~ql~~E~qaWq~~ 166 (279)
.+.+.++..+++....+
T Consensus 91 ~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 91 SAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhchhhhhH
Confidence 66666666666644433
No 99
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=67.63 E-value=81 Score=29.90 Aligned_cols=73 Identities=5% Similarity=0.066 Sum_probs=50.9
Q ss_pred HhhHHHHHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023682 87 LDRQKEEFDQYIKVQEEYLAKGV-------------QDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 87 l~~q~~EiD~~i~~q~e~lr~~l-------------~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl 153 (279)
+.+-..+|+.|++.=.+.||..+ .+..++|+.-|=..|+..+. .||....-|++...++..||..|
T Consensus 79 ~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 79 YQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455667777776666655443 34556677777778887777 88888888999999998888888
Q ss_pred HHHHHHH
Q 023682 154 KQMAAEA 160 (279)
Q Consensus 154 ~ql~~E~ 160 (279)
.--..-|
T Consensus 158 d~c~~~C 164 (390)
T 1deq_A 158 DIKIRSC 164 (390)
T ss_pred HHHhccc
Confidence 4433333
No 100
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=63.77 E-value=14 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.343 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 134 EKDMEIENMNRKNRELIERIKQMAAEA 160 (279)
Q Consensus 134 eKe~Eie~~~kk~~eLeErl~ql~~E~ 160 (279)
+.|.|+..+...|-.||..+.|+.-|+
T Consensus 5 qlekevaqaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 445677777788888888888887765
No 101
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=63.44 E-value=28 Score=27.66 Aligned_cols=31 Identities=32% Similarity=0.372 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 134 EKDMEIENMNRKNRELIERIKQMAAEAQNWH 164 (279)
Q Consensus 134 eKe~Eie~~~kk~~eLeErl~ql~~E~qaWq 164 (279)
++|..|+.+.+.+-.|...+..+..|++.|.
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v 42 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVV 42 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555444
No 102
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=63.03 E-value=48 Score=26.42 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023682 104 YLAKGVQDMKQRHMASFLSAIEKGL---AKKLQEKDMEIENMNRKNRELIERIK 154 (279)
Q Consensus 104 ~lr~~l~e~r~rh~~~ll~ave~~~---~~rLreKe~Eie~~~kk~~eLeErl~ 154 (279)
-|+..|.+..-+- ...+.-++..+ -.+|+++.+|++++++.+-+|.-|+.
T Consensus 57 tL~~SL~~ekaq~-q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~ 109 (121)
T 3mq7_A 57 ALMASLDAEKAQG-QKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIA 109 (121)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhh
Confidence 5666665433222 23333333333 23466666777777777666665554
No 103
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=62.86 E-value=59 Score=31.69 Aligned_cols=73 Identities=14% Similarity=0.294 Sum_probs=39.1
Q ss_pred hHHHHHHhhHHH-----HHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH-------HHHHHHHHHH
Q 023682 81 DNVRTELDRQKE-----EFDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKD-------MEIENMNRKN 146 (279)
Q Consensus 81 ~~l~~~l~~q~~-----EiD~~i~~q~e--~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe-------~Eie~~~kk~ 146 (279)
+.+...+.+-+. .||.++.+..+ .+...+++.+. --+.+...+++..+.++ ++++.+..+.
T Consensus 51 ~~v~~~l~~R~~~~~~~~~~~~~~ld~~~r~~~~~~~~l~~-----~rn~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~ 125 (501)
T 1wle_A 51 EDAARALDLRKGELRSKDLPGIISTWQELRQLREQIRSLEE-----EKEAVTEAVRALVVNQDNSQVQQDPQYQSLRARG 125 (501)
T ss_dssp HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCTTGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhcCccccccccccHHHHHHHH
Confidence 445555665443 38998888755 23333333332 23445555555444432 4566666666
Q ss_pred HHHHHHHHHHHH
Q 023682 147 RELIERIKQMAA 158 (279)
Q Consensus 147 ~eLeErl~ql~~ 158 (279)
.+|.++++.+..
T Consensus 126 ~~l~~~i~~l~~ 137 (501)
T 1wle_A 126 REIRKQLTLLYP 137 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666665543
No 104
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=62.34 E-value=47 Score=24.88 Aligned_cols=45 Identities=27% Similarity=0.510 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHH
Q 023682 104 YLAKGVQDMKQRHMASFLSAIE--KGLAKKLQEKDMEIENMNRKNRELIE 151 (279)
Q Consensus 104 ~lr~~l~e~r~rh~~~ll~ave--~~~~~rLreKe~Eie~~~kk~~eLeE 151 (279)
+-|..|+|+||.-. -.+++ ...-+.+-.|++||..++..|.+|.+
T Consensus 20 ~YWk~lAE~Rr~AL---~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~e 66 (83)
T 1wlq_A 20 QYWKEVAEQRRKAL---YEALKENEKLHKEIEQKDSEIARLRKENKDLAE 66 (83)
T ss_dssp THHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777666433 33333 11233344555566665555554443
No 105
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=60.62 E-value=10 Score=24.07 Aligned_cols=29 Identities=14% Similarity=0.359 Sum_probs=22.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMAAE 159 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~~E 159 (279)
||.+.|+.++.+-.++++|+..+.+|...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 56677888899999999999877776643
No 106
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=60.23 E-value=12 Score=23.76 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=20.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
||.+.|+-++.+-.++++|+..+.+|.
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 566777788888888888887666654
No 107
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=58.15 E-value=54 Score=24.28 Aligned_cols=47 Identities=26% Similarity=0.477 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 023682 104 YLAKGVQDMKQRHMASFLSAIEK--GLAKKLQEKDMEIENMNRKNRELIERI 153 (279)
Q Consensus 104 ~lr~~l~e~r~rh~~~ll~ave~--~~~~rLreKe~Eie~~~kk~~eLeErl 153 (279)
+-|..|+|+|+. +|-.+++. ..-+.+-+|++||..++..|..|.+-+
T Consensus 16 ~YWk~lAE~RR~---AL~eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~ 64 (79)
T 2zxx_A 16 QYWKEVAEQRRK---ALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVA 64 (79)
T ss_dssp THHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665543 23333331 222345566666666666665554433
No 108
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=57.66 E-value=4.1 Score=30.33 Aligned_cols=30 Identities=20% Similarity=0.637 Sum_probs=22.8
Q ss_pred cccccccccc---ccceEEecCCCcccchhhHhc
Q 023682 229 QMICRACKAK---EASVLLMPCRHLCLCKDCDVL 259 (279)
Q Consensus 229 ~~~C~iC~~~---~~~v~llPC~HlclC~~C~~~ 259 (279)
...|.+|.+. ++...-++|+|. +|..|...
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~ 35 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA 35 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence 3579999963 444444899998 99999875
No 109
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=56.13 E-value=1e+02 Score=26.82 Aligned_cols=53 Identities=9% Similarity=0.075 Sum_probs=34.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
+.....||+.+.+++..|++.+..+..+....+......++....+...|...
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~ 144 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALEL 144 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777777777777777777666666655555555555555433
No 110
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=55.99 E-value=5.4 Score=36.75 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=32.1
Q ss_pred cccccccccccccceEEec----CCC-cccchhhHhc----CCCCCCCcccc
Q 023682 228 HQMICRACKAKEASVLLMP----CRH-LCLCKDCDVL----VAVCPVCQFVK 270 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llP----C~H-lclC~~C~~~----l~~CPvCr~~i 270 (279)
....|.||++.+.-.++.. =|+ +..|..|... -.+||.|....
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~~ 232 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEESK 232 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCCS
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCCC
Confidence 3568999999998766652 333 4589999754 37999999873
No 111
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.01 E-value=52 Score=32.57 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhHHHHHH
Q 023682 91 KEEFDQYIKVQEEYLAK 107 (279)
Q Consensus 91 ~~EiD~~i~~q~e~lr~ 107 (279)
..+++.|++.-.|.||.
T Consensus 80 sKdseqy~k~~~E~Lr~ 96 (562)
T 3ghg_A 80 NKDSHSLTTNIMEILRG 96 (562)
T ss_dssp HHHHHHHHHHHHHTTSS
T ss_pred chhHHHHHHHHHHHHHH
Confidence 34555555554444433
No 112
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=52.90 E-value=54 Score=22.69 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=27.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAK 168 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~ 168 (279)
+-+.+.+++.+...|.+|...+..|..|...|...-.
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~ 61 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILA 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677778888888888888888888877766543
No 113
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=52.64 E-value=70 Score=23.90 Aligned_cols=48 Identities=27% Similarity=0.464 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 023682 102 EEYLAKGVQDMKQRHMASFLSAIEK--GLAKKLQEKDMEIENMNRKNRELIER 152 (279)
Q Consensus 102 ~e~lr~~l~e~r~rh~~~ll~ave~--~~~~rLreKe~Eie~~~kk~~eLeEr 152 (279)
.++-|..|+|.||.- |-.++++ ..-.++-.|++||..++..|.+|.+-
T Consensus 26 se~YWk~lAE~RR~A---L~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 26 SSQYWKEVAEKRRKA---LYEALKENEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777766643 3333331 22233445666666666666555443
No 114
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=52.53 E-value=74 Score=24.13 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=32.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMAAEAQNW-------HYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaW-------q~~A~~nea~a~~Lr~~Lqq~ 184 (279)
+.-+++.||..+.|++..|++.+.++......- ...+...|+.+.+|...++.+
T Consensus 38 ~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 38 RSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577777777777777766665544333322 233455666777777776644
No 115
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=51.84 E-value=9.3 Score=29.23 Aligned_cols=44 Identities=20% Similarity=0.589 Sum_probs=31.5
Q ss_pred cccccccccccc----cceEEecCCC--cccchhhHhc-----CCCCCCCccccc
Q 023682 228 HQMICRACKAKE----ASVLLMPCRH--LCLCKDCDVL-----VAVCPVCQFVKN 271 (279)
Q Consensus 228 ~~~~C~iC~~~~----~~v~llPC~H--lclC~~C~~~-----l~~CPvCr~~i~ 271 (279)
....|.||.+.. -.-+|.-|.. +.+|..|..- -..||.|.+...
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 456899999862 2226667764 3479999765 489999998765
No 116
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=51.53 E-value=46 Score=27.97 Aligned_cols=30 Identities=17% Similarity=0.350 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 125 EKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 125 e~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
.+.+..+|.+.|..++.+++ .|+|+|+++.
T Consensus 7 ~ee~~e~L~~~e~l~~el~~---tWeeKl~~te 36 (184)
T 4egx_A 7 SEEAIERLKETEKIIAELNE---TWEEKLRRTE 36 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHh---HHHHHHHHHH
Confidence 34455667777666666543 5777776544
No 117
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.92 E-value=1.9e+02 Score=28.64 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=39.4
Q ss_pred HHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHH
Q 023682 82 NVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASF---LSAIEKGLAKKLQEKDMEIENMNRKNR-ELIERIKQMA 157 (279)
Q Consensus 82 ~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~l---l~ave~~~~~rLreKe~Eie~~~kk~~-eLeErl~ql~ 157 (279)
.|-.-|.+|..+|...| ++||..|++. ++-.... +..+-....+++..-. +.++.-.++. ||+.++.-|.
T Consensus 50 rLQglLdkqErDltkrI----NELKnqLEdl-sKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLK 123 (562)
T 3ghg_A 50 RMKGLIDEVNQDFTNRI----NKLKNSLFEY-QKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLK 123 (562)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHTHH-HHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHH
T ss_pred chhhhHHhhcCcHHHHH----HHHHHHHHHH-HhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHH
Confidence 45556667766665544 5677777776 3333222 2222222233343333 4555555555 6666666666
Q ss_pred HHHHH
Q 023682 158 AEAQN 162 (279)
Q Consensus 158 ~E~qa 162 (279)
.+.+.
T Consensus 124 ekVdn 128 (562)
T 3ghg_A 124 RKVIE 128 (562)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55553
No 118
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.64 E-value=1.1e+02 Score=25.40 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 136 DMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 136 e~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
-.|+..++-++..+|++++.+..|++
T Consensus 102 ~DEl~aLqlq~n~lE~kl~kLq~EN~ 127 (152)
T 3a7p_A 102 NAALISGTIENNVLQQKLSDLKKEHS 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35888889999999999999999993
No 119
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=50.31 E-value=79 Score=23.82 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=32.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNW-------HYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaW-------q~~A~~nea~a~~Lr~~Lqq~ 184 (279)
..+++.||..+.|++..|++.+..+......- ...+...|+-+.+|...++.+
T Consensus 39 ~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqll 98 (101)
T 3u59_A 39 CKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777766666554433332222 335566778888888887654
No 120
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=50.29 E-value=68 Score=23.05 Aligned_cols=14 Identities=29% Similarity=0.622 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHHHH
Q 023682 146 NRELIERIKQMAAE 159 (279)
Q Consensus 146 ~~eLeErl~ql~~E 159 (279)
|..|.+.+..|..|
T Consensus 52 n~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 52 NDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 121
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=50.25 E-value=42 Score=24.48 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=9.7
Q ss_pred HHHHhhHHHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKN 146 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~ 146 (279)
++|.+||++|..+..++
T Consensus 47 k~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 47 LELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666666555544
No 122
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=49.39 E-value=60 Score=22.19 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=25.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYR 166 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~ 166 (279)
..+.+.+++.+...|.+|...+..|..|...|...
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788888888888888777776654
No 123
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=49.22 E-value=77 Score=23.38 Aligned_cols=30 Identities=27% Similarity=0.604 Sum_probs=18.9
Q ss_pred chhhhhhhHHH----HHHhhHHHHHHHHHHHhHH
Q 023682 74 PIILSLADNVR----TELDRQKEEFDQYIKVQEE 103 (279)
Q Consensus 74 ~~~~~~~~~l~----~~l~~q~~EiD~~i~~q~e 103 (279)
|+++++.|-|. -.|++-+.|||.+=+.+.|
T Consensus 3 SllSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~E 36 (78)
T 3iv1_A 3 SLISAVSDKLRWRMKEEMDRAQAELNALKRTEED 36 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666666543 3456667777777776654
No 124
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.45 E-value=61 Score=30.72 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=39.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 133 QEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
.+.++|+..+..+..+|++.++++..|...-...-...+..-..|+++++.+...
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3456677777777888888888887777776666556556666677888777554
No 125
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=48.08 E-value=2.1e+02 Score=28.13 Aligned_cols=56 Identities=18% Similarity=0.290 Sum_probs=33.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhh---hHHHHHHHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMA--------AEAQNWHYRAKY---NESVVNLLKSNLQQAI 185 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~--------~E~qaWq~~A~~---nea~a~~Lr~~Lqq~~ 185 (279)
+-+-....||+.+++..+++...+.+.. .-...||.-... ....++.+.+.++.+.
T Consensus 349 ~~~~~~~~~~~~~n~~~~~~~~~~~~f~~~n~~p~~~Gh~~w~~~~~~~~~~~~dv~~~~a~~d~~~ 415 (551)
T 2b5u_A 349 QVYNSRKSELDAANKTLADAIAEIKQFNRFAHDPMAGGHRMWQMAGLKAQRAQTDVNNKQAAFDAAA 415 (551)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhhhhHHHHHHHhhhhhhhhccChhhccchhhhhccchhhhhhhhhhhHHHHHHHHh
Confidence 3344555688888999888887777765 223689874432 2333444444444443
No 126
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=47.31 E-value=64 Score=21.87 Aligned_cols=32 Identities=19% Similarity=0.472 Sum_probs=24.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 129 AKKLQEKDMEIENMNRKNRELIERIKQMAAEA 160 (279)
Q Consensus 129 ~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~ 160 (279)
..|+++...++..+..+|..|.+-|+....|-
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888888888888888888777665443
No 127
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=47.11 E-value=41 Score=22.86 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWH 164 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq 164 (279)
.+++.+...|.+|+.++..|..+++...
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777777666665443
No 128
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=46.36 E-value=1.1e+02 Score=24.51 Aligned_cols=67 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred HHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 94 FDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 94 iD~~i~~q~e--~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
.|-|++.+.+ .|...+++..+--+.---..++ .--++.+...|++.+.+++.+|+.++.+|.+|...
T Consensus 67 adEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~--~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 67 ADDYFKAKKMADSLSLDIENKDKEIYDLKHELIA--AQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 129
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=45.69 E-value=49 Score=20.08 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 136 DMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 136 e~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
|+|+-+++--..+|++|+.++..-.|
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45666666666667777766665444
No 130
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.49 E-value=2.8e+02 Score=33.43 Aligned_cols=18 Identities=17% Similarity=0.021 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023682 143 NRKNRELIERIKQMAAEA 160 (279)
Q Consensus 143 ~kk~~eLeErl~ql~~E~ 160 (279)
..+++++++++..+..+.
T Consensus 2034 ~~~L~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 2034 VATITALEKSIATYKEEY 2051 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333334444444443333
No 131
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=44.42 E-value=56 Score=28.40 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 023682 92 EEFDQYIKVQEEYLAKGVQDMK 113 (279)
Q Consensus 92 ~EiD~~i~~q~e~lr~~l~e~r 113 (279)
.|++.+ ..+.+.|...+.+..
T Consensus 59 ~e~~~l-~~~l~~l~~e~~el~ 79 (213)
T 4ani_A 59 EELAAA-KAQIAELEAKLSEME 79 (213)
T ss_dssp CHHHHH-HHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHH
Confidence 455543 334445554444433
No 132
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=44.42 E-value=1.2e+02 Score=24.04 Aligned_cols=29 Identities=24% Similarity=0.245 Sum_probs=23.1
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHhHHH
Q 023682 76 ILSLADNVRTELDRQKEEFDQYIKVQEEY 104 (279)
Q Consensus 76 ~~~~~~~l~~~l~~q~~EiD~~i~~q~e~ 104 (279)
+...+|-|..+|.|-+.|.|..++.|-++
T Consensus 30 ~~~~sDPL~~ELeRLr~~~d~~~K~HE~k 58 (115)
T 3vem_A 30 FPVFNDPFLHELEKLRRESENSKKTFEEK 58 (115)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457889999999999999999999764
No 133
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=44.32 E-value=1e+02 Score=23.39 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhhHHHH
Q 023682 102 EEYLAKGVQDMKQRHMASFLSAI-EKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWH------YRAKYNESVV 174 (279)
Q Consensus 102 ~e~lr~~l~e~r~rh~~~ll~av-e~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq------~~A~~nea~a 174 (279)
.++|+.-+.+..+-|.+.|-++- +..+- ++.|.-+..+.+....+..+|+.+..++..-. ...+-....+
T Consensus 21 i~~i~~~v~~l~~~~~~~L~~~~~~~~~~---~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~ 97 (127)
T 1ez3_A 21 IDKIAENVEEVKRKHSAILASPNPDEKTK---EELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLNRSSADLRIRKTQH 97 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHH
Confidence 34566666777777776654221 11111 23345556666777777788888877765311 1224456677
Q ss_pred HHHHHHHHHHHhc
Q 023682 175 NLLKSNLQQAISQ 187 (279)
Q Consensus 175 ~~Lr~~Lqq~~~~ 187 (279)
.+|...+..++..
T Consensus 98 ~~L~~kf~e~m~~ 110 (127)
T 1ez3_A 98 STLSRKFVEVMSE 110 (127)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888777643
No 134
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=44.19 E-value=33 Score=21.36 Aligned_cols=26 Identities=15% Similarity=0.362 Sum_probs=16.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
|-+.|..++.+-.+|.+|+..+.+|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556666677777777776665553
No 135
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=43.30 E-value=2.4e+02 Score=30.07 Aligned_cols=17 Identities=6% Similarity=0.173 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023682 140 ENMNRKNRELIERIKQM 156 (279)
Q Consensus 140 e~~~kk~~eLeErl~ql 156 (279)
+++.+...+||++..++
T Consensus 1001 ~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 1001 HQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 136
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=42.59 E-value=1.1e+02 Score=29.36 Aligned_cols=84 Identities=20% Similarity=0.409 Sum_probs=0.0
Q ss_pred hhHHHHHHhhHHH-H----HHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 023682 80 ADNVRTELDRQKE-E----FDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIER 152 (279)
Q Consensus 80 ~~~l~~~l~~q~~-E----iD~~i~~q~e--~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeEr 152 (279)
++.+...+.+-.. + +|.++.+..+ .+...+++.+.++. .+...+++..+.+ ++.+.+..+..+|.++
T Consensus 11 ~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n-----~~sk~i~~~~~~~-~~~~~l~~~~~~~~~~ 84 (455)
T 2dq0_A 11 PELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERN-----KIAVEIGKRRKKG-EPVDELLAKSREIVKR 84 (455)
T ss_dssp HHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHTSC-CCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhhccc-ccHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhh
Q 023682 153 IKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 153 l~ql~~E~qaWq~~A~~ 169 (279)
++.+..+.......-..
T Consensus 85 ~~~~~~~~~~~~~~~~~ 101 (455)
T 2dq0_A 85 IGELENEVEELKKKIDY 101 (455)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
No 137
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=42.28 E-value=2.1e+02 Score=26.48 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=30.2
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
+-+.+......++-.+.|.+.+..-..-. +.+.++.|+.+..|..+|+.+-++
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 413 FQDVEAQAATANHTVMALMASLDAEKAQG---QKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555566665554333222 346777777777777777766543
No 138
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=42.27 E-value=1.3e+02 Score=29.16 Aligned_cols=59 Identities=17% Similarity=0.358 Sum_probs=30.2
Q ss_pred HHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 93 EFDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 93 EiD~~i~~q~e--~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
.+|.++.+..+ .++..+++.+.+ .+.+...+++..+.++ +++.+..+..+|.++++.+.
T Consensus 31 ~~~~~~~ld~~~r~~~~~~~~l~~~-----rn~~sk~i~~~k~~~~-~~~~l~~~~~~l~~~i~~le 91 (485)
T 3qne_A 31 LVDEIIAEYKEWVKLRFDLDEHNKK-----LNSVQKEIGKRFKAKE-DAKDLIAEKEKLSNEKKEII 91 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHHH
Confidence 38999888765 334444333333 3444555554444442 34445555555555555444
No 139
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=40.81 E-value=38 Score=21.01 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=16.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
|.+.|.-++.+-.++.+|+..+.++.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45556666666667776666655543
No 140
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=40.63 E-value=35 Score=21.34 Aligned_cols=27 Identities=7% Similarity=0.162 Sum_probs=17.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
||.+.|..++.+-.+|.+|+..+.++.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455666677777777777776666554
No 141
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=40.21 E-value=22 Score=24.82 Aligned_cols=37 Identities=30% Similarity=0.877 Sum_probs=23.9
Q ss_pred cccccccccccceEEe---cCCCcccchhhHhc----CCCCCCCc
Q 023682 230 MICRACKAKEASVLLM---PCRHLCLCKDCDVL----VAVCPVCQ 267 (279)
Q Consensus 230 ~~C~iC~~~~~~v~ll---PC~HlclC~~C~~~----l~~CPvCr 267 (279)
..|..|.....+.-.. -|++. +|.+|... +..||.|.
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~-FC~dCD~fiHe~Lh~CPgC~ 59 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNV-FCVDCDVFVHDSLHSCPGCI 59 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCC-BCHHHHHTTTTTSCSSSTTC
T ss_pred CcccccCcccCCCccEECCccCcC-cccchhHHHHhhccCCcCCC
Confidence 3577777765432212 24444 89999865 68999983
No 142
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.83 E-value=47 Score=23.82 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 124 IEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 124 ve~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
+++.....|+.||+-|..+...+.+-.+.+++|.-+-+.
T Consensus 12 ~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 12 LEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555566655555555554444444444433333
No 143
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=39.56 E-value=1.4e+02 Score=23.56 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH
Q 023682 91 KEEFDQYIKVQEEYLAKGVQDM 112 (279)
Q Consensus 91 ~~EiD~~i~~q~e~lr~~l~e~ 112 (279)
...||+ ++...++||..|+..
T Consensus 14 D~~Ie~-Lkreie~lk~ele~l 34 (120)
T 3i00_A 14 DHLIER-LYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHH
Confidence 345555 455666777766544
No 144
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=38.90 E-value=1.6e+02 Score=27.92 Aligned_cols=55 Identities=11% Similarity=0.084 Sum_probs=36.4
Q ss_pred HHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 023682 86 ELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENM 142 (279)
Q Consensus 86 ~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~ 142 (279)
.|+.-.++.++=|+-..++|+..|.+..+-|.-......+ +...||++...+...
T Consensus 53 rLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~--~~~~lk~~~~q~~dn 107 (390)
T 1deq_A 53 RMKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKN--IVELMRGDFAKANNN 107 (390)
T ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHHHHhhccc
Confidence 4666677777888999999999999988887754433322 334455544444433
No 145
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=38.79 E-value=39 Score=21.11 Aligned_cols=27 Identities=19% Similarity=0.342 Sum_probs=16.7
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
|+.+.|.-++.+-.++.+|+..+.+|.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~ 28 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLA 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455566666666777777776665554
No 146
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=37.99 E-value=45 Score=20.69 Aligned_cols=25 Identities=4% Similarity=0.214 Sum_probs=14.0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQM 156 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql 156 (279)
|.+.|.-++.+-.++.+|+..+.++
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RL 26 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARI 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445555556666666666555544
No 147
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=37.56 E-value=12 Score=31.21 Aligned_cols=16 Identities=38% Similarity=0.708 Sum_probs=13.3
Q ss_pred CCCCCCcccccceEEE
Q 023682 261 AVCPVCQFVKNASVLV 276 (279)
Q Consensus 261 ~~CPvCr~~i~~~v~v 276 (279)
..||+|..+...+..+
T Consensus 154 ~~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 154 EYCPVCGAPKEKFVVF 169 (170)
T ss_dssp SBCTTTCCBGGGCEEE
T ss_pred CCCCCCCCCHHHceec
Confidence 5999999998887664
No 148
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=37.36 E-value=1.3e+02 Score=22.77 Aligned_cols=26 Identities=23% Similarity=0.426 Sum_probs=19.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQM 156 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql 156 (279)
++|+...||-++-+....||-+|+.|
T Consensus 53 ~IRdLNDEINkL~rEK~~WE~rI~eL 78 (92)
T 1x4t_A 53 RIRDLNDEINKLLREKGHWEVRIKEL 78 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47777788887777777777777655
No 149
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=36.82 E-value=1.4e+02 Score=22.86 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=49.0
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 023682 130 KKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAIS 186 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~ 186 (279)
.-||++|++...-++-.+-|.+.+..-.+-.+.|+...++-+..+..|+-+|+.+.-
T Consensus 32 ~~l~~~eaQAaTCNqTV~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lqda~~ 88 (99)
T 3ni0_A 32 DSLLQAETQANSCNLTVVTLQESLEKKVSQALEQQARIKELENEVTKLNQELENLRI 88 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888888888899999999999888888999999999999999999988887653
No 150
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=36.73 E-value=1.7e+02 Score=24.24 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023682 140 ENMNRKNRELIERIKQMA 157 (279)
Q Consensus 140 e~~~kk~~eLeErl~ql~ 157 (279)
..+.+.+..|+.+++++.
T Consensus 71 ~~L~~El~~l~~ki~dLe 88 (152)
T 3a7p_A 71 AILQKELKSKEQEIRRLK 88 (152)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 151
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=36.42 E-value=11 Score=32.41 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=12.8
Q ss_pred CCCCCCcccccceEE
Q 023682 261 AVCPVCQFVKNASVL 275 (279)
Q Consensus 261 ~~CPvCr~~i~~~v~ 275 (279)
..||+|..++..+..
T Consensus 187 ~~CP~C~~~k~~F~~ 201 (202)
T 1yuz_A 187 EKCPICFRPKDTFTA 201 (202)
T ss_dssp SBCTTTCCBGGGCEE
T ss_pred CCCCCCCCChHHhee
Confidence 699999999887765
No 152
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=36.20 E-value=1.3e+02 Score=22.20 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023682 140 ENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSN 180 (279)
Q Consensus 140 e~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~ 180 (279)
++..+...+|++...++..|-...+....+.+.+...|...
T Consensus 31 ~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~ 71 (89)
T 3bas_A 31 AKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSK 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34444555777777777777666665555555555555433
No 153
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=35.62 E-value=1.1e+02 Score=21.20 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 023682 116 HMASFLSAIEKGLAKKLQEKDMEIENMNRKNR 147 (279)
Q Consensus 116 h~~~ll~ave~~~~~rLreKe~Eie~~~kk~~ 147 (279)
...+|+..|+.- --.=-+||.||+++++.+.
T Consensus 19 ~n~~L~~kv~~L-e~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 19 MNVQLAAKIQHL-EFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 334444444322 1223466777777766554
No 154
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.21 E-value=6.5e+02 Score=30.36 Aligned_cols=12 Identities=0% Similarity=0.351 Sum_probs=5.6
Q ss_pred HHHHhhHHHHHH
Q 023682 84 RTELDRQKEEFD 95 (279)
Q Consensus 84 ~~~l~~q~~EiD 95 (279)
..-+.+.+.||.
T Consensus 1905 ~~ll~~K~~el~ 1916 (3245)
T 3vkg_A 1905 VLLINEKRDQLE 1916 (3245)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333444455554
No 155
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=34.94 E-value=18 Score=24.57 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=10.2
Q ss_pred CCCCCcccccceEEE
Q 023682 262 VCPVCQFVKNASVLV 276 (279)
Q Consensus 262 ~CPvCr~~i~~~v~v 276 (279)
.||+|..++..+..+
T Consensus 37 ~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 37 VCPLCGAPKSEFERI 51 (52)
T ss_dssp BCTTTCCBGGGEEEE
T ss_pred cCCCCCCCHHHcEEC
Confidence 577777777766553
No 156
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.37 E-value=60 Score=20.25 Aligned_cols=25 Identities=12% Similarity=0.321 Sum_probs=12.5
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHH
Q 023682 132 LQEKDMEIENMNRKNRELIERIKQM 156 (279)
Q Consensus 132 LreKe~Eie~~~kk~~eLeErl~ql 156 (279)
|-+.|.-++.+-.+|.+|+..+.+|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3344444555555555555554444
No 157
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=34.28 E-value=16 Score=24.76 Aligned_cols=14 Identities=43% Similarity=0.733 Sum_probs=8.5
Q ss_pred CCCCCcccccceEE
Q 023682 262 VCPVCQFVKNASVL 275 (279)
Q Consensus 262 ~CPvCr~~i~~~v~ 275 (279)
.||+|..++..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (52)
T 1e8j_A 38 ACPVCGASKDAFEK 51 (52)
T ss_dssp CCSSSCCCTTSCEE
T ss_pred cCCCCCCcHHHcEE
Confidence 56666666665543
No 158
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=33.80 E-value=1.2e+02 Score=21.09 Aligned_cols=9 Identities=11% Similarity=0.198 Sum_probs=3.8
Q ss_pred HHHHHHHHh
Q 023682 126 KGLAKKLQE 134 (279)
Q Consensus 126 ~~~~~rLre 134 (279)
..+++|-|+
T Consensus 18 reAArrsR~ 26 (63)
T 2dgc_A 18 TEAARRSRA 26 (63)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334444443
No 159
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=33.55 E-value=16 Score=25.15 Aligned_cols=14 Identities=36% Similarity=0.702 Sum_probs=8.8
Q ss_pred CCCCCcccccceEE
Q 023682 262 VCPVCQFVKNASVL 275 (279)
Q Consensus 262 ~CPvCr~~i~~~v~ 275 (279)
.||+|...+..+..
T Consensus 38 ~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 38 VCPLCGVGKDEFEE 51 (54)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHceE
Confidence 56777666666554
No 160
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=33.45 E-value=18 Score=24.86 Aligned_cols=15 Identities=33% Similarity=0.627 Sum_probs=10.9
Q ss_pred CCCCCcccccceEEE
Q 023682 262 VCPVCQFVKNASVLV 276 (279)
Q Consensus 262 ~CPvCr~~i~~~v~v 276 (279)
.||+|..++..+..+
T Consensus 38 ~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 38 VCPDCGVGKIDFEMI 52 (55)
T ss_dssp CCTTTCCCGGGEEEC
T ss_pred cCCCCCCCHHHceec
Confidence 688888877777654
No 161
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=33.35 E-value=1.8e+02 Score=22.97 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 023682 116 HMASFLSAIEKGLAKKLQEKDMEIENMNRKNR 147 (279)
Q Consensus 116 h~~~ll~ave~~~~~rLreKe~Eie~~~kk~~ 147 (279)
+.-.+...=|..-.+..-+-|.|++.+.+++-
T Consensus 47 ~~d~~~K~HE~kklqLkse~e~E~ae~k~KYD 78 (115)
T 3vem_A 47 ESENSKKTFEEKKSILKAELERKMAEVQAEFR 78 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555667778888888865
No 162
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=32.30 E-value=63 Score=20.15 Aligned_cols=26 Identities=4% Similarity=0.100 Sum_probs=14.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQM 156 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql 156 (279)
||-+.|.-++.+-.++.+|+..+.+|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 34445555555555666665555444
No 163
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=32.22 E-value=1.7e+02 Score=22.52 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023682 143 NRKNRELIERIKQMAAEAQNW 163 (279)
Q Consensus 143 ~kk~~eLeErl~ql~~E~qaW 163 (279)
..+..+|+..+.+|.+||+..
T Consensus 64 ~~~v~eLe~everL~~ENq~L 84 (104)
T 3s9g_A 64 DARVRELELELDRLRAENLQL 84 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 457777777777777777653
No 164
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=31.94 E-value=22 Score=26.45 Aligned_cols=16 Identities=31% Similarity=0.526 Sum_probs=13.9
Q ss_pred CCCCCCcccccceEEE
Q 023682 261 AVCPVCQFVKNASVLV 276 (279)
Q Consensus 261 ~~CPvCr~~i~~~v~v 276 (279)
..||+|..++..+..+
T Consensus 61 W~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 61 WSCPDCGAAKSDFEMV 76 (81)
T ss_dssp CCCTTTCCCGGGEEEE
T ss_pred CcCCCCCCCHHHcEEc
Confidence 3799999999998876
No 165
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=31.81 E-value=29 Score=30.45 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=30.1
Q ss_pred ccccccccccccceEEec-CCCcccchhhHhc------CCCCCCCcccccce
Q 023682 229 QMICRACKAKEASVLLMP-CRHLCLCKDCDVL------VAVCPVCQFVKNAS 273 (279)
Q Consensus 229 ~~~C~iC~~~~~~v~llP-C~HlclC~~C~~~------l~~CPvCr~~i~~~ 273 (279)
...|.+|++--.--...| |+|. +=..|... -..||.|+.+...-
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 567999998666555544 6655 55667654 24999999876654
No 166
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=31.43 E-value=74 Score=21.84 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023682 145 KNRELIERIKQMAAEAQNWHYRAKYNESVV 174 (279)
Q Consensus 145 k~~eLeErl~ql~~E~qaWq~~A~~nea~a 174 (279)
.+.+|+..+..|..|+..+......-...+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777766554433333
No 167
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.61 E-value=76 Score=19.82 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=16.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
||.+.|.-++.+-.++.+|+..+.++.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455566666666666666666555543
No 168
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=30.53 E-value=2.1e+02 Score=26.90 Aligned_cols=56 Identities=20% Similarity=0.328 Sum_probs=25.5
Q ss_pred HHHHHHHhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 94 FDQYIKVQEEY--LAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 94 iD~~i~~q~e~--lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
+|.++.+..++ +...+++.+.+ -+.+...+++ +. .++.+.+..+..+|.++++.+.
T Consensus 27 ~~~~~~~~~~~r~~~~~~~~l~~~-----~n~~sk~i~~--~~-~~~~~~l~~~~~~~~~~~~~~~ 84 (421)
T 1ses_A 27 LEALLALDREVQELKKRLQEVQTE-----RNQVAKRVPK--AP-PEEKEALIARGKALGEEAKRLE 84 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHSSS--SC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHh--hc-cccHHHHHHHHHHHHHHHHHHH
Confidence 78777776542 22223222222 2233333333 22 2445555555555555555444
No 169
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=30.33 E-value=1.5e+02 Score=22.04 Aligned_cols=40 Identities=13% Similarity=0.218 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023682 143 NRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQ 182 (279)
Q Consensus 143 ~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lq 182 (279)
+.+..+++.++..|..||...+.....-+..+..|+.-|-
T Consensus 35 k~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777777777776666655555555554443
No 170
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=30.28 E-value=20 Score=23.84 Aligned_cols=14 Identities=36% Similarity=0.743 Sum_probs=11.0
Q ss_pred CCCCCcccccceEE
Q 023682 262 VCPVCQFVKNASVL 275 (279)
Q Consensus 262 ~CPvCr~~i~~~v~ 275 (279)
.||+|..++..+..
T Consensus 32 ~CP~Cg~~k~~F~~ 45 (46)
T 6rxn_A 32 CCPVCGVSKDQFSP 45 (46)
T ss_dssp BCTTTCCBGGGEEE
T ss_pred cCcCCCCcHHHcEe
Confidence 79999888877654
No 171
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=30.20 E-value=1.6e+02 Score=21.46 Aligned_cols=29 Identities=14% Similarity=0.318 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 137 MEIENMNRKNRELIERIKQMAAEAQNWHY 165 (279)
Q Consensus 137 ~Eie~~~kk~~eLeErl~ql~~E~qaWq~ 165 (279)
..++.+.+.|..|+..|.+|..|...+..
T Consensus 43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 43 HKVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777776665543
No 172
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=29.93 E-value=2.2e+02 Score=23.04 Aligned_cols=83 Identities=10% Similarity=0.215 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhhhHHHHHH
Q 023682 103 EYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNW------HYRAKYNESVVNL 176 (279)
Q Consensus 103 e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaW------q~~A~~nea~a~~ 176 (279)
.+++.-+.+..+.|.+.|..+-.....+ ++.+.-+..+.+....+..+|+.+..++..- ....+-......+
T Consensus 53 ~~i~~~v~~l~~~~~~~L~~~~~~~~~k--~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~~~s~~~Rir~~q~~~ 130 (180)
T 1s94_A 53 DKISDNVDAVKKKHSDILSAPQTDDQMK--EELEELMTDIKRTANKVRGKLKTIELNIEQEEHSNKSSADLRIRKTQYST 130 (180)
T ss_dssp HHHHHHHHHHHHHHHHHCC-------CH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcHHHHHHHHHHHH
Confidence 3455555555666666554322211111 2233344455566666667777777654321 1111233456677
Q ss_pred HHHHHHHHHhc
Q 023682 177 LKSNLQQAISQ 187 (279)
Q Consensus 177 Lr~~Lqq~~~~ 187 (279)
|...+..++..
T Consensus 131 L~~kf~~~m~~ 141 (180)
T 1s94_A 131 ISRKFVEVMSD 141 (180)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 173
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=29.76 E-value=2.2e+02 Score=22.91 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 023682 142 MNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQA 184 (279)
Q Consensus 142 ~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~ 184 (279)
+.....+|=++|.++..|-+++.....-+.-.++.|+..+..+
T Consensus 63 L~e~~keLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 3444445557888999999999999999988899998877666
No 174
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=29.45 E-value=75 Score=19.84 Aligned_cols=27 Identities=7% Similarity=0.343 Sum_probs=15.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 131 KLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 131 rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
||.+.|.-++.+-.++.+|+..+.++.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 445556666666666666666555543
No 175
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=28.65 E-value=1.9e+02 Score=21.92 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 102 EEYLAKGVQDMKQRHMASFLSAIEKGLAK---KLQEKDMEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 102 ~e~lr~~l~e~r~rh~~~ll~ave~~~~~---rLreKe~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
+|++-...--+.+.....+++.++..... ++|+.+.-|+.+-|-+- -|++.++.-|++
T Consensus 15 ~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~--~EklAkldLE~R 75 (101)
T 1d7m_A 15 SEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLE--LEKLARMELEAR 75 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--HHHHHHHHHHHH
Confidence 34443333333444455555555544443 35666665555554433 245555555543
No 176
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=27.48 E-value=23 Score=25.56 Aligned_cols=15 Identities=33% Similarity=0.722 Sum_probs=11.8
Q ss_pred CCCCCcccccceEEE
Q 023682 262 VCPVCQFVKNASVLV 276 (279)
Q Consensus 262 ~CPvCr~~i~~~v~v 276 (279)
.||+|..++..+..+
T Consensus 42 ~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 42 MCPACRSPKNQFKSI 56 (70)
T ss_dssp BCTTTCCBGGGEEEC
T ss_pred cCCCCCCCHHHceEc
Confidence 688888888877664
No 177
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.15 E-value=4.5e+02 Score=25.36 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=19.4
Q ss_pred HHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 93 EFDQYIKVQEE--YLAKGVQDMKQRHMASFLSAIEKGLAKKLQ 133 (279)
Q Consensus 93 EiD~~i~~q~e--~lr~~l~e~r~rh~~~ll~ave~~~~~rLr 133 (279)
.+|.++.+..+ .++..+++.+.+ -+.+...+++..+
T Consensus 35 ~~d~~~~ld~~~r~~~~~~~~l~~~-----rN~~sk~i~~~~~ 72 (484)
T 3lss_A 35 IVDAIIEADKKWRRTQFLTEASKKL-----INICSKAVGAKKK 72 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhh
Confidence 38999988766 344444433333 3444445554444
No 178
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=25.61 E-value=1.4e+02 Score=28.19 Aligned_cols=10 Identities=10% Similarity=0.451 Sum_probs=7.1
Q ss_pred HHHHHHHhHH
Q 023682 94 FDQYIKVQEE 103 (279)
Q Consensus 94 iD~~i~~q~e 103 (279)
+|.++.+..+
T Consensus 29 ~~~~~~~~~~ 38 (425)
T 2dq3_A 29 VDKVLELDKR 38 (425)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6787777655
No 179
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=25.57 E-value=18 Score=30.55 Aligned_cols=15 Identities=33% Similarity=0.707 Sum_probs=12.4
Q ss_pred CCCCCCcccccceEE
Q 023682 261 AVCPVCQFVKNASVL 275 (279)
Q Consensus 261 ~~CPvCr~~i~~~v~ 275 (279)
..||+|..++..+..
T Consensus 172 ~~CP~C~~~k~~f~~ 186 (191)
T 1lko_A 172 ELCPACAHPKAHFEL 186 (191)
T ss_dssp SBCTTTCCBGGGEEE
T ss_pred CCCCCCcCCHHHHHh
Confidence 489999999887754
No 180
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=25.44 E-value=88 Score=21.08 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=17.3
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Q 023682 130 KKLQEKDMEIENMNRKNRELIER 152 (279)
Q Consensus 130 ~rLreKe~Eie~~~kk~~eLeEr 152 (279)
+++++.|.++-+++|++..||+.
T Consensus 14 kk~eeler~lrk~kk~iKklEde 36 (50)
T 1a92_A 14 KKLEELERDLRKLKKKIKKLEED 36 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcc
Confidence 45777777888888888877764
No 181
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=25.13 E-value=3.7e+02 Score=28.59 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 135 KDMEIENMNRKNRELIERIKQMAA 158 (279)
Q Consensus 135 Ke~Eie~~~kk~~eLeErl~ql~~ 158 (279)
++.+++.+..+..+|++++..+..
T Consensus 911 ~e~~l~~l~~~~~~Le~~l~ele~ 934 (1184)
T 1i84_S 911 AEEMRVRLAAKKQELEEILHEMEA 934 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 182
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=24.75 E-value=1.7e+02 Score=21.75 Aligned_cols=20 Identities=20% Similarity=0.466 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023682 142 MNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 142 ~~kk~~eLeErl~ql~~E~q 161 (279)
+.++|.+|...++++..+-.
T Consensus 50 ae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 50 AEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555444433
No 183
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=24.70 E-value=2.2e+02 Score=21.20 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=24.3
Q ss_pred hhhhhhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 023682 76 ILSLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQR 115 (279)
Q Consensus 76 ~~~~~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~r 115 (279)
+..|-|-|++.|++ =+|+-.|+..|...+.+.+.+
T Consensus 11 mq~LNdRlAsyIdK-----VR~LEqqN~~Le~~i~~l~~~ 45 (93)
T 3s4r_A 11 LQELNDRFANLIDK-----VRFLEQQNKILLAELEQLKGQ 45 (93)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhc
Confidence 45678888888875 356777777777766655544
No 184
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=24.66 E-value=43 Score=22.94 Aligned_cols=34 Identities=32% Similarity=0.741 Sum_probs=21.2
Q ss_pred cccccccccccccceEEecCCCcccchhhHhc----------------CCCCCCCcccc
Q 023682 228 HQMICRACKAKEASVLLMPCRHLCLCKDCDVL----------------VAVCPVCQFVK 270 (279)
Q Consensus 228 ~~~~C~iC~~~~~~v~llPC~HlclC~~C~~~----------------l~~CPvCr~~i 270 (279)
+...|.+|... +++.+|..|... ...||.|....
T Consensus 8 ~~~~C~vC~~~---------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 8 HMEFCRVCKDG---------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SCSSCTTTCCC---------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCcCCCCCCC---------CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 34579999864 344466666443 14688887643
No 185
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=23.98 E-value=2.3e+02 Score=21.13 Aligned_cols=69 Identities=12% Similarity=0.187 Sum_probs=43.2
Q ss_pred hhhhHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023682 78 SLADNVRTELDRQKEEFDQYIKVQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIK 154 (279)
Q Consensus 78 ~~~~~l~~~l~~q~~EiD~~i~~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ 154 (279)
.++-++.++|.+.+.+---||.. |+..|++++-.-.-++++.-+ +.||+..+++..+-++.+-+-+.-+
T Consensus 18 V~P~G~~~~lrq~I~DKQ~~i~~----Lt~eLq~A~~eaNpaeIA~~~----~~L~qAraDL~~l~r~~av~g~E~R 86 (90)
T 4b6x_A 18 VCPRGAGAALRQEIEDKQLMVNN----LTDELQDAIDEANPAEIANTS----QQLRHARADLADLQRRFAVLRNEDR 86 (90)
T ss_dssp ----CTTHHHHHHHHHHHHHHHH----HHHHHHHHHHTTCHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccccccHHHHHHHHHHHHHHHH----HHHHHHHHHHccCHHHHHhHH----HHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 45666778888777766666654 555666666666666665555 5677777777777777766655433
No 186
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=23.36 E-value=2.3e+02 Score=24.22 Aligned_cols=44 Identities=14% Similarity=0.073 Sum_probs=32.4
Q ss_pred HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023682 132 LQEKDM-EIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVN 175 (279)
Q Consensus 132 LreKe~-Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~ 175 (279)
+++|.. =|+.+.+++..|.+.-..+..|.++|...-.+-++.+.
T Consensus 13 i~~Kk~ELi~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~ 57 (190)
T 3thf_A 13 IKQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLA 57 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 344444 45678888888888888888888888877777666553
No 187
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.35 E-value=5.1e+02 Score=24.97 Aligned_cols=11 Identities=27% Similarity=0.465 Sum_probs=0.0
Q ss_pred CCCCcCcchhh
Q 023682 2 LRPNKRGRETE 12 (279)
Q Consensus 2 ~~~~kr~~e~~ 12 (279)
+||=-|+||+-
T Consensus 20 ~~~~~~~~~~~ 30 (464)
T 1m1j_B 20 HRPLDKRQEAA 30 (464)
T ss_dssp -----------
T ss_pred ccccccccccC
Confidence 46667777763
No 188
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=23.33 E-value=2.2e+02 Score=24.78 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023682 139 IENMNRKNRELIERIKQMA 157 (279)
Q Consensus 139 ie~~~kk~~eLeErl~ql~ 157 (279)
+++++.||.+||+++..|.
T Consensus 74 ~~~LR~r~~~Le~~L~~Li 92 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLM 92 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544
No 189
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=22.71 E-value=5.3e+02 Score=25.01 Aligned_cols=45 Identities=9% Similarity=0.135 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 023682 112 MKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIKQMA 157 (279)
Q Consensus 112 ~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ql~ 157 (279)
..++|..-|=..|+..+ .+||....-|++...++..||..|..-.
T Consensus 115 eLe~ri~yIK~kVd~qi-~~IrvLq~~l~~q~skIQRLE~dI~~q~ 159 (491)
T 1m1j_A 115 ELRRRIVTLKQRVATQV-NRIKALQNSIQEQVVEMKRLEVDIDIKI 159 (491)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666 6677777777777777777776665433
No 190
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=22.63 E-value=1.9e+02 Score=19.86 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=18.0
Q ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 127 GLAKKLQEKD-MEIENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 127 ~~~~rLreKe-~Eie~~~kk~~eLeErl~ql~~E~q 161 (279)
.++.|-|+|- ++++.+..+..+|+.....|..+..
T Consensus 12 ~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 12 TAATRYRQKKRAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666644 4455555555555544444444443
No 191
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=22.49 E-value=2.6e+02 Score=27.45 Aligned_cols=91 Identities=13% Similarity=0.136 Sum_probs=44.5
Q ss_pred HHHHHHhhHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 023682 82 NVRTELDRQKEEFDQYIK-------VQEEYLAKGVQDMKQRHMASFLSAIEKGLAKKLQEKDMEIENMNRKNRELIERIK 154 (279)
Q Consensus 82 ~l~~~l~~q~~EiD~~i~-------~q~e~lr~~l~e~r~rh~~~ll~ave~~~~~rLreKe~Eie~~~kk~~eLeErl~ 154 (279)
..+..|-+--.+-+.|++ +..++|+..-.|-+.+- -+|+.-+.+ ++ ..-+.+.++..||+++++
T Consensus 275 ~~ak~i~~lc~~~H~ff~~~r~~d~~e~qqm~~~a~e~~~~~------~~e~~~l~~--~~-~~~~~~~~~~~~~~~~~~ 345 (575)
T 2i1j_A 275 RVNKRILALCMGNHELYMRRRKPDTIDVQQMKAQAREEKLAK------QAQREKLQL--EI-AARERAEKKQQEYQDRLR 345 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH------HHHHTTCCS--CC-CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHH------HHHHHHHHH--HH-HHHHHHHHhHHHHHHHHH
Confidence 456667767777777775 44667776554433322 223222111 11 122334444566666666
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023682 155 QMAAEAQNWHYRAKYNESVVNLLKSNL 181 (279)
Q Consensus 155 ql~~E~qaWq~~A~~nea~a~~Lr~~L 181 (279)
++..|...++......+.+|.-|-.++
T Consensus 346 ~~~~~~~~~~~~l~~~~~~~~~l~e~~ 372 (575)
T 2i1j_A 346 QMQEEMERSQANLLEAQDMILRLEEQL 372 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 666666666666666665555554433
No 192
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=21.98 E-value=2.4e+02 Score=20.69 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023682 139 IENMNRKNRELIERIKQMAAEAQ 161 (279)
Q Consensus 139 ie~~~kk~~eLeErl~ql~~E~q 161 (279)
+..+..+|.+||++|+.+...-.
T Consensus 15 lq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455566666666666554443
No 193
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=21.69 E-value=79 Score=24.27 Aligned_cols=7 Identities=14% Similarity=0.235 Sum_probs=3.0
Q ss_pred ccccccc
Q 023682 232 CRACKAK 238 (279)
Q Consensus 232 C~iC~~~ 238 (279)
+.|...+
T Consensus 79 ~rVaLn~ 85 (109)
T 2wg5_A 79 ARVALNQ 85 (109)
T ss_dssp CEEEEET
T ss_pred CEEEECC
Confidence 4444444
No 194
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=21.63 E-value=3.7e+02 Score=22.71 Aligned_cols=44 Identities=14% Similarity=0.175 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 023682 142 MNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAI 185 (279)
Q Consensus 142 ~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~ 185 (279)
+.....+|=++|-+|..|-+.+.....-+.-.++.|+..+..+.
T Consensus 63 L~e~ckELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLr 106 (180)
T 1j1e_C 63 LQDLARQLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLR 106 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHH
Confidence 34444455588899999999999999999889999988877763
No 195
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.51 E-value=38 Score=25.48 Aligned_cols=16 Identities=38% Similarity=0.604 Sum_probs=13.0
Q ss_pred CCCCCCcccccceEEE
Q 023682 261 AVCPVCQFVKNASVLV 276 (279)
Q Consensus 261 ~~CPvCr~~i~~~v~v 276 (279)
..||+|..++..+..+
T Consensus 69 W~CPvCga~K~~F~~i 84 (87)
T 1s24_A 69 WCCPDCGATKEDYVLY 84 (87)
T ss_dssp CCCSSSCCCGGGEEEC
T ss_pred CCCCCCCCCHHHhhhc
Confidence 3799999998888764
No 196
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=21.28 E-value=13 Score=30.66 Aligned_cols=10 Identities=40% Similarity=1.344 Sum_probs=5.1
Q ss_pred CCCcccchhhH
Q 023682 247 CRHLCLCKDCD 257 (279)
Q Consensus 247 C~HlclC~~C~ 257 (279)
|.|. +|..|.
T Consensus 91 C~~~-VC~~C~ 100 (153)
T 2zet_C 91 CSLF-VCKSCS 100 (153)
T ss_dssp TCCE-ECGGGE
T ss_pred CCch-hhcccc
Confidence 4444 466665
No 197
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=21.22 E-value=99 Score=27.62 Aligned_cols=45 Identities=16% Similarity=0.352 Sum_probs=32.7
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 023682 129 AKKLQEKDMEIENMNRKNRELIERIKQMAAEAQNWHYRAKYNESVVNLLKSNLQQAISQ 187 (279)
Q Consensus 129 ~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qaWq~~A~~nea~a~~Lr~~Lqq~~~~ 187 (279)
..|+++++.++..+..+|..|.+.++.+..|. ..|+.+|+++..-
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El--------------~~LkeElerL~sP 97 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQL--------------LALREEVDRLGQP 97 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH--------------HHHHHHHHHHHSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHhcCC
Confidence 35778888888888888887887777666553 3467778777654
No 198
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.98 E-value=5.6e+02 Score=24.63 Aligned_cols=23 Identities=13% Similarity=0.042 Sum_probs=10.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Q 023682 129 AKKLQEKDMEIENMNRKNRELIE 151 (279)
Q Consensus 129 ~~rLreKe~Eie~~~kk~~eLeE 151 (279)
...+.+++..+......+.+..+
T Consensus 127 q~slk~~Q~Qi~en~n~~~~~~~ 149 (464)
T 1m1j_B 127 DNKLVKTQKQRKDNDIILSEYNT 149 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhcccccccchhhHHHHHHH
Confidence 34455555555554444444333
No 199
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=20.57 E-value=39 Score=23.14 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=8.1
Q ss_pred ccccccccccc
Q 023682 228 HQMICRACKAK 238 (279)
Q Consensus 228 ~~~~C~iC~~~ 238 (279)
....|.+|...
T Consensus 10 ~~~~C~vC~~~ 20 (61)
T 2l5u_A 10 HQDYCEVCQQG 20 (61)
T ss_dssp CCSSCTTTSCC
T ss_pred CCCCCccCCCC
Confidence 44579999874
No 200
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.44 E-value=1.4e+02 Score=27.08 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=26.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023682 128 LAKKLQEKDMEIENMNRKNRELIERIKQMAAEAQN 162 (279)
Q Consensus 128 ~~~rLreKe~Eie~~~kk~~eLeErl~ql~~E~qa 162 (279)
..+....++.||+.+..++.+|++.+..+..+...
T Consensus 176 ~~~~~n~~~~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 176 LKDLFNVDAFKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444556789999999999999999999766544
No 201
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=20.18 E-value=3.1e+02 Score=21.36 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=13.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHH
Q 023682 133 QEKDMEIENMNRKNRELIERIKQM 156 (279)
Q Consensus 133 reKe~Eie~~~kk~~eLeErl~ql 156 (279)
++...+++++...-.+|++.|..-
T Consensus 16 ~ql~~qL~k~~~~r~~Le~~w~~k 39 (112)
T 1x79_B 16 RQANDQLEKTMKDKQELEDFIKQS 39 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334446666666666666664443
No 202
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=20.17 E-value=1.7e+02 Score=21.28 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023682 143 NRKNRELIERIKQMAAEAQNWHYRAKY 169 (279)
Q Consensus 143 ~kk~~eLeErl~ql~~E~qaWq~~A~~ 169 (279)
..+..+++.++..|..|+...+.....
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~ 61 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQ 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666777777777766554444
Done!