BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023683
(279 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FZ33|AXR4_ARATH Protein AUXIN RESPONSE 4 OS=Arabidopsis thaliana GN=AXR4 PE=1 SV=1
Length = 473
Score = 326 bits (836), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 160/268 (59%), Positives = 207/268 (77%), Gaps = 1/268 (0%)
Query: 1 MINSLRSKKFNVIAVDLPGNGFSDRSRMEFE-ERSDGAFQRFKDVYGLIQEKGFFWAFDQ 59
MI SL SK + +A+DLPGNGFSD+S + +R G R K+VYGLIQEKG FWAFDQ
Sbjct: 136 MIQSLGSKGIHSVAIDLPGNGFSDKSMVVIGGDREIGFVARVKEVYGLIQEKGVFWAFDQ 195
Query: 60 IVETGQIPYEEILKARVLERKSVKVIELGSDEVGRVLGQVIDTFNLAPVHLVLHDSALPM 119
++ETG +PYEEI+K + +R+S K IELGS+E RVLGQVIDT LAPVHLVLHDSAL +
Sbjct: 196 MIETGDLPYEEIIKLQNSKRRSFKAIELGSEETARVLGQVIDTLGLAPVHLVLHDSALGL 255
Query: 120 SANWVAENPGSVKSLTLLDTGIKPALPLFALNLPLIRDFVLGSSFGYQWLIRFCCMKKVG 179
++NWV+EN SV+S+TL+D+ I PALPL+ LN+P IR+ +L SFG++ L+ F C K++
Sbjct: 256 ASNWVSENWQSVRSVTLIDSSISPALPLWVLNVPGIREILLAFSFGFEKLVSFRCSKEMT 315
Query: 180 SFDVEDNRVLLKGRDRCRAVSEMGRKLNNSFDMAEWGSSEGIKGIPMQILWSSVWSKEWS 239
D++ +R+LLKGR+ AV KLN+SFD+A+WG+S+GI GIPMQ++WSS SKEWS
Sbjct: 316 LSDIDAHRILLKGRNGREAVVASLNKLNHSFDIAQWGNSDGINGIPMQVIWSSEASKEWS 375
Query: 240 EEGSRVADALPQAKFVGHSGGRWPQTSR 267
+EG RVA ALP+AKFV HSG RWPQ S+
Sbjct: 376 DEGQRVAKALPKAKFVTHSGSRWPQESK 403
>sp|P73883|Y249_SYNY3 Uncharacterized protein sll0249 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll0249 PE=4 SV=1
Length = 251
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 95 VLGQVIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLDTGIKPAL 145
++G+ ++ F+ PVHL+ H ++ ++ + + P V+SL+LL G+ PAL
Sbjct: 59 LIGEYLENFH-QPVHLIGHSTSGLLALLYARQCPEKVRSLSLLSVGVYPAL 108
>sp|Q9JK38|GNA1_MOUSE Glucosamine 6-phosphate N-acetyltransferase OS=Mus musculus
GN=Gnpnat1 PE=2 SV=1
Length = 184
Score = 32.7 bits (73), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 51 KGFFWAFDQIVETGQIPYEEILKARVLERKS----VKVIELGSDEVGRVLGQVIDTFNLA 106
KGFF Q+ ETG + E+ +K+ +KS V V+E LGQ++ T L
Sbjct: 51 KGFFKVLGQLTETGVVSPEQFMKSFEHMKKSGDYYVTVVE------DVTLGQIVATATLI 104
Query: 107 PVHLVLHDSA 116
H +H A
Sbjct: 105 IEHKFIHSCA 114
>sp|O58734|SYP_PYRHO Proline--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=proS PE=3
SV=2
Length = 480
Score = 32.3 bits (72), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 86/218 (39%), Gaps = 36/218 (16%)
Query: 39 QRFKDVYGLIQEKGFFWAFDQIVETGQIPYEEILKARVLERKSVKVIELGSDEVGRVLGQ 98
Q F Y ++ EK E G Y + ER VI + D+ G VL
Sbjct: 233 QNFSKAYNILYEK----------EDGTHDYVHQTTFGMSERLLAAVIAIHGDDRGMVLPP 282
Query: 99 VIDTFNLAPVHLVLHDSALPMSANWVAENPGSVKSLTLLDTGIKPALPLFALNLPLIRDF 158
I AP+ +V+ S V ++ L D GI+ L L RD
Sbjct: 283 TI-----APIQVVIVPIPKKGSEEEVYSYAKGIEE-ELRDAGIRVYLDL--------RDK 328
Query: 159 VLGSSFGYQWLIRFCCMK-KVGSFDVEDNRVLLKGRDRCRAVSEMGRKLNNSFDMAEWGS 217
G F Y W ++ ++ +VG DV+++ V+L RD+ ++ +L +
Sbjct: 329 RPGWKF-YDWELKGVPVRVEVGPIDVQNSTVVLARRDKLEKITVKREELVDKV------- 380
Query: 218 SEGIKGIPMQILWSSVWSKEWSEEGSRVADALPQAKFV 255
E + I M+ L+ + EW E + D L +AK V
Sbjct: 381 RELFEDI-MEFLYER--ANEWLESHIKRVDTLEEAKAV 415
>sp|Q5RAL9|GNA1_PONAB Glucosamine 6-phosphate N-acetyltransferase OS=Pongo abelii
GN=GNPNAT1 PE=2 SV=2
Length = 184
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 51 KGFFWAFDQIVETGQIPYEEILKARVLERKS----VKVIELGSDEVGRVLGQVIDTFNLA 106
+GFF Q+ ETG + E+ +K+ +KS V V+E LGQ++ T L
Sbjct: 51 RGFFKVLGQLTETGVVSPEQFMKSFEHMKKSGDYYVTVVE------DVTLGQIVATATLI 104
Query: 107 PVHLVLHDSA 116
H +H A
Sbjct: 105 IEHKFIHSCA 114
>sp|Q96EK6|GNA1_HUMAN Glucosamine 6-phosphate N-acetyltransferase OS=Homo sapiens
GN=GNPNAT1 PE=1 SV=1
Length = 184
Score = 32.0 bits (71), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)
Query: 51 KGFFWAFDQIVETGQIPYEEILKARVLERKS----VKVIELGSDEVGRVLGQVIDTFNLA 106
+GFF Q+ ETG + E+ +K+ +KS V V+E LGQ++ T L
Sbjct: 51 RGFFKVLGQLTETGVVSPEQFMKSFEHMKKSGDYYVTVVE------DVTLGQIVATATLI 104
Query: 107 PVHLVLHDSA 116
H +H A
Sbjct: 105 IEHKFIHSCA 114
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,886,880
Number of Sequences: 539616
Number of extensions: 4576150
Number of successful extensions: 9880
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 9872
Number of HSP's gapped (non-prelim): 13
length of query: 279
length of database: 191,569,459
effective HSP length: 116
effective length of query: 163
effective length of database: 128,974,003
effective search space: 21022762489
effective search space used: 21022762489
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)