Query 023684
Match_columns 279
No_of_seqs 209 out of 1738
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0945 Alpha-aminoadipic semi 100.0 1.7E-46 3.8E-51 328.4 16.6 226 5-232 17-250 (289)
2 COG2091 Sfp Phosphopantetheiny 100.0 5.4E-36 1.2E-40 262.5 15.8 209 4-232 2-210 (223)
3 PRK10351 holo-(acyl carrier pr 100.0 3.6E-31 7.8E-36 226.1 13.1 166 28-231 8-173 (187)
4 PRK10251 phosphopantetheinyltr 99.9 5.7E-23 1.2E-27 178.3 12.8 160 43-226 47-206 (207)
5 PRK14659 acpS 4'-phosphopantet 99.6 2.5E-15 5.5E-20 120.7 12.4 112 115-227 4-118 (122)
6 PF01648 ACPS: 4'-phosphopante 99.6 3.2E-16 6.9E-21 123.3 4.4 107 115-226 1-114 (115)
7 PRK14656 acpS 4'-phosphopantet 99.5 1.1E-13 2.4E-18 111.7 9.4 108 115-227 4-122 (126)
8 TIGR00556 pantethn_trn phospho 99.4 9.7E-13 2.1E-17 106.3 11.0 107 114-227 3-124 (128)
9 COG2977 EntD Phosphopantethein 99.4 3.1E-12 6.8E-17 110.9 14.3 147 27-193 35-186 (228)
10 PRK14657 acpS 4'-phosphopantet 99.4 2.1E-12 4.5E-17 103.9 10.6 106 115-227 4-120 (123)
11 PRK14660 acpS 4'-phosphopantet 99.4 1.2E-12 2.6E-17 105.5 9.2 108 115-227 4-122 (125)
12 PRK14661 acpS 4'-phosphopantet 99.4 2.4E-12 5.2E-17 107.7 10.1 100 115-227 4-106 (169)
13 TIGR00516 acpS holo-[acyl-carr 99.4 5.5E-12 1.2E-16 101.1 10.4 108 115-227 3-118 (121)
14 PRK14658 acpS 4'-phosphopantet 99.3 1.7E-11 3.6E-16 97.3 10.7 107 114-228 3-109 (115)
15 PRK00070 acpS 4'-phosphopantet 99.3 1.3E-11 2.8E-16 99.3 9.0 109 115-228 4-123 (126)
16 COG0736 AcpS Phosphopantethein 99.3 9.1E-12 2E-16 100.1 7.9 110 114-228 3-123 (127)
17 PRK14663 acpS 4'-phosphopantet 99.2 3.2E-10 7E-15 90.2 11.1 89 136-228 19-113 (116)
18 PRK14662 acpS 4'-phosphopantet 99.2 1.3E-10 2.8E-15 93.0 8.3 105 115-227 4-116 (120)
19 PRK00070 acpS 4'-phosphopantet 99.0 1.3E-09 2.8E-14 87.6 7.9 84 24-110 26-121 (126)
20 PRK14658 acpS 4'-phosphopantet 98.9 2.3E-08 5E-13 79.4 10.8 96 7-107 7-104 (115)
21 PRK14659 acpS 4'-phosphopantet 98.6 2.9E-07 6.3E-12 73.9 10.0 84 24-108 26-115 (122)
22 PRK14660 acpS 4'-phosphopantet 98.6 3.4E-07 7.4E-12 73.8 9.5 82 24-108 26-119 (125)
23 COG0736 AcpS Phosphopantethein 98.6 2.9E-07 6.3E-12 74.1 8.9 82 23-107 25-118 (127)
24 TIGR00516 acpS holo-[acyl-carr 98.6 4.1E-07 8.9E-12 72.9 9.4 83 24-109 25-116 (121)
25 PRK14663 acpS 4'-phosphopantet 98.5 1E-06 2.3E-11 70.0 9.3 83 24-109 20-110 (116)
26 PRK14662 acpS 4'-phosphopantet 98.4 1.7E-06 3.6E-11 69.3 8.7 81 24-108 26-113 (120)
27 PRK14657 acpS 4'-phosphopantet 98.3 4.4E-06 9.5E-11 67.2 9.5 81 24-109 26-118 (123)
28 PRK14656 acpS 4'-phosphopantet 98.3 7.6E-06 1.7E-10 66.0 9.5 82 24-108 26-119 (126)
29 PRK14661 acpS 4'-phosphopantet 97.9 6.7E-05 1.4E-09 63.2 8.9 80 23-107 18-102 (169)
30 TIGR00556 pantethn_trn phospho 97.6 0.00076 1.7E-08 54.2 9.7 86 23-109 24-122 (128)
31 PF01648 ACPS: 4'-phosphopante 96.7 0.007 1.5E-07 46.9 7.0 87 23-110 19-115 (115)
32 PF13986 DUF4224: Domain of un 81.9 4.2 9.1E-05 26.9 4.7 42 28-85 2-43 (47)
33 PF11572 DUF3234: Protein of u 71.6 1.9 4.1E-05 32.7 0.9 16 164-179 56-71 (103)
34 PF09655 Nitr_red_assoc: Conse 35.3 1.1E+02 0.0024 25.2 5.5 66 4-74 17-82 (144)
35 COG0643 CheA Chemotaxis protei 28.7 22 0.00047 37.0 0.4 86 77-185 457-543 (716)
36 PHA02085 hypothetical protein 27.8 92 0.002 22.9 3.4 39 39-78 4-42 (87)
37 cd08778 Death_TNFRSF21 Death d 24.9 56 0.0012 23.5 1.9 54 117-172 2-58 (84)
38 PF09866 DUF2093: Uncharacteri 23.2 59 0.0013 21.0 1.5 16 102-118 4-19 (42)
39 COG4058 McrA Methyl coenzyme M 22.1 61 0.0013 30.8 2.0 37 71-112 461-498 (553)
40 PF02772 S-AdoMet_synt_M: S-ad 21.9 1.3E+02 0.0029 23.9 3.7 28 69-104 55-82 (120)
No 1
>KOG0945 consensus Alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.7e-46 Score=328.43 Aligned_cols=226 Identities=30% Similarity=0.462 Sum_probs=200.3
Q ss_pred eEEEEEECCCCCCChhcHHHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeEccCCCCCcEEe
Q 023684 5 VQRWVVDISKWDPTPHDFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLE 84 (279)
Q Consensus 5 ~~~w~~d~~~w~~~~~~~~~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g~~~~~i~~~~~~~GKP~l~ 84 (279)
.+.|++.+.+|.++.+.|..+...||++|++++.+|++.+|++.+|+||+|+|.+++.++|++|++++|.++.+|||++.
T Consensus 17 ~~~wAf~~~~~e~s~a~f~~a~~~ls~se~erI~qfr~~~DakaaL~grLl~R~~~a~~~~~~~n~l~f~rt~~GKP~l~ 96 (289)
T KOG0945|consen 17 SLQWAFVVPDFEKSLALFRHAVQSLSPSEKERILQFRFDEDAKAALAGRLLVRHLVAIYLGVPWNELRFSRTEYGKPVLW 96 (289)
T ss_pred hhhhheecchhhhhHHHHHHHHHhCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCChhHeEeecccCCCcchh
Confidence 46899999999888889999999999999999999999999999999999999999999999999999999999999666
Q ss_pred cCCCCCCCCceeEeeccCCCeEEEEecCCccccccccccccccCCChhHHHHHHhccCCHHHHHHHHhcCCchHHHHHHH
Q 023684 85 SDKAGMDFPNFNFNVSHHGDYVAIASEPLCLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFY 164 (279)
Q Consensus 85 ~~~~~~~~~~~~fniSHs~~~v~~a~~~~~~VGVDIe~~~~~~~~~~~~~~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~ 164 (279)
+.......++++|||||+|++++||+....+||||||....+ .+.++++.+|+++||+.|++.|++..++..+...||
T Consensus 97 qn~~~p~~~~f~fNvSH~gd~iv~at~~~~~VGIDIm~~~~r--~~~~e~l~~~kr~fS~~E~k~l~s~~~e~~~~~~Fy 174 (289)
T KOG0945|consen 97 QNYSNPFSPTFGFNVSHQGDLIVVATTVHVPVGIDIMRPKER--KTAHEELELFKRVFSEDEWKMLKSAPDEEVQRTMFY 174 (289)
T ss_pred hcccCCCCCCccceeeeeceEEEEeccCCcccceeeeecccc--cchHHHHHHHHHhcCHHHHHHHHcCCChhhHHHHHH
Confidence 543333468999999999999999999889999999999633 456899999999999999999998877788899999
Q ss_pred HHHHHHHhhHhhccccCCCCCCeEEEEecCC----Cc----eEEEecCCccccEEEEEEecCCCeEEEEEeCCCCC
Q 023684 165 RYWCLKEAYVKAIGIGVAYGLDKVEFHHTGW----GN----ISVKIDGETMTEWKFWLFELGKRHWASVAKGHPKS 232 (279)
Q Consensus 165 ~~WtlKEA~~Ka~G~GL~~~l~~~~~~~~~~----~~----~~l~~~g~~~~~w~~~~~~~~~~y~~ava~~~~~~ 232 (279)
++|||||||+||+|+||..+|+.++|....- ++ .....+|....+|.++...+++.|.+|||...++.
T Consensus 175 rlWtLKEa~lKAtGvGl~~~L~~~~F~~~p~~~~~g~s~~~T~~~~~g~~~~qw~feE~~i~~~h~vav~~~k~d~ 250 (289)
T KOG0945|consen 175 RLWTLKEAILKATGVGLNTDLSLLDFSANPFNTATGQSKVETLDEVDGIFQSQWNFEESFIDEAHSVAVCMEKSDS 250 (289)
T ss_pred HHHHHHHHHHHHhcCCcccccccccccccccccccceeeeeeeeccCCccchhhhhhhhhccccceeEEeccCCCc
Confidence 9999999999999999999999999876531 11 12345887788999999999999999999987764
No 2
>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism]
Probab=100.00 E-value=5.4e-36 Score=262.49 Aligned_cols=209 Identities=29% Similarity=0.311 Sum_probs=166.9
Q ss_pred ceEEEEEECCCCCCChhcHHHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeEccCCCCCcEE
Q 023684 4 GVQRWVVDISKWDPTPHDFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYL 83 (279)
Q Consensus 4 ~~~~w~~d~~~w~~~~~~~~~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g~~~~~i~~~~~~~GKP~l 83 (279)
++-+|++++..-. ...+..+..+..+|+.+..+|++.+||.+++++++++|.+++..++.++.++.|.++++|||++
T Consensus 2 ~~~~~v~~~~~~~---~~~~~~l~~~~~~E~~r~~r~~~~~dr~r~l~~~~~lr~lls~~l~~~~~~~~~~~~~~GKP~~ 78 (223)
T COG2091 2 MATVFVVGIQSDR---PLIERRLPSLLSEEARRGPRYRNKRDRERFLASRLLLRALLSIALGLDPELLQISYGERGKPYL 78 (223)
T ss_pred CceEEEEeccCcc---hhhhhhhcccchHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhCCCcccceeeECCCCCccc
Confidence 3457888887532 2345667777788999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCceeEeeccCCCeEEEEecCCccccccccccccccCCChhHHHHHHhccCCHHHHHHHHhcCCchHHHHHH
Q 023684 84 ESDKAGMDFPNFNFNVSHHGDYVAIASEPLCLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEF 163 (279)
Q Consensus 84 ~~~~~~~~~~~~~fniSHs~~~v~~a~~~~~~VGVDIe~~~~~~~~~~~~~~~~~~~~ft~~E~~~i~~~~~~~~~~~~f 163 (279)
.+. ..++|||||||+||+||++..++||||||+++... .+..+++++|++.|.+.+.. .+++++.++|
T Consensus 79 ~~~------~~~~FniSHSg~~v~v~l~~~~~iGVDIE~~~p~~-----~~~~la~~ff~~~e~~e~~~-~~~~~~~~~F 146 (223)
T COG2091 79 PDE------NLLDFNISHSGDYVAVALSKEGEIGVDIEKIRPRA-----GWRSLAARFFHPFEPNELAW-LDKDQDNEAF 146 (223)
T ss_pred cCC------CCCcEEEeeeCCeEEEEEecccceeeeEEEecCCC-----cchhhHHHhcCcccHHHHhh-cChHHHHHHH
Confidence 983 34999999999999999998899999999997531 23466788888888877765 3555668999
Q ss_pred HHHHHHHHhhHhhccccCCCCCCeEEEEecCCCceEEEecCCccccEEEEEEecCCCeEEEEEeCCCCC
Q 023684 164 YRYWCLKEAYVKAIGIGVAYGLDKVEFHHTGWGNISVKIDGETMTEWKFWLFELGKRHWASVAKGHPKS 232 (279)
Q Consensus 164 ~~~WtlKEA~~Ka~G~GL~~~l~~~~~~~~~~~~~~l~~~g~~~~~w~~~~~~~~~~y~~ava~~~~~~ 232 (279)
|++||+||||+|++|.||+.+|+++.+.......... ......|.+... .+.|..+++...+..
T Consensus 147 ~~lWt~KEA~lKa~G~Gl~~~L~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 210 (223)
T COG2091 147 YRLWTLKEAVLKATGKGLADGLSSVDLTPIAGKLSLA---HCQLEALSLAEE--VPVYSVAVAPAIPKL 210 (223)
T ss_pred HHHHHHHHHHHHhhCCccccCccceeecccccccccc---ccchhheeehhh--cCccceeehhhhhhc
Confidence 9999999999999999999999999998653221111 113345666555 466777776665553
No 3
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional
Probab=99.97 E-value=3.6e-31 Score=226.13 Aligned_cols=166 Identities=23% Similarity=0.221 Sum_probs=128.1
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeEccCCCCCcEEecCCCCCCCCceeEeeccCCCeEE
Q 023684 28 LLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLESDKAGMDFPNFNFNVSHHGDYVA 107 (279)
Q Consensus 28 ~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g~~~~~i~~~~~~~GKP~l~~~~~~~~~~~~~fniSHs~~~v~ 107 (279)
-|+++-+++. .+.++|.+||+||+|+|.+++. .+ .|.++++|||++.+ .++++|||||||++++
T Consensus 8 ~~~~~~~~~~---~~~kRR~efLagR~lLr~~L~~---~p----~i~~~~~GKP~l~~------~~~~~fSISHSg~~va 71 (187)
T PRK10351 8 PLPPALREQA---PQGPRRARWLAGRVLLSHALSP---LP----EIIYGEQGKPAFAP------ETPLWFNLSHSGDDIA 71 (187)
T ss_pred cCCHHHHHhC---CCHHHHHHHHHHHHHHHHHhhc---CC----CcccCcCCCccccC------CCCCeEEEecccCcEE
Confidence 3777666544 4788999999999999999874 22 47889999999975 3579999999999999
Q ss_pred EEecCCccccccccccccccCCChhHHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCCCCCCe
Q 023684 108 IASEPLCLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAYGLDK 187 (279)
Q Consensus 108 ~a~~~~~~VGVDIe~~~~~~~~~~~~~~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~~l~~ 187 (279)
|+++...+||||||.++.. .++..+++++|+++|++++.. .+++++...||++||+|||++|++|.++. ++..
T Consensus 72 ~a~s~~~~VGIDIE~i~~~-----~~~~~la~~~fs~~E~~~L~~-~~~~~~~~~F~~lWT~KEA~lKa~G~~~~-~~~~ 144 (187)
T PRK10351 72 LLLSDEGEVGCDIEVIRPR-----ANWRSLANAVFSLGEHAEMDA-VHPEQQLEAFWRIWTRKEAIVKQRGGSAW-QIVS 144 (187)
T ss_pred EEEEcCCCeEEEEEEecCc-----cCHHHHHHHhCCHHHHHHHHc-CCchhHHHHHHHHHHHHHHHhcccCCCCc-cccc
Confidence 9999778999999998753 245678899999999999976 45567789999999999999999999885 3444
Q ss_pred EEEEecCCCceEEEecCCccccEEEEEEecCCCeEEEEEeCCCC
Q 023684 188 VEFHHTGWGNISVKIDGETMTEWKFWLFELGKRHWASVAKGHPK 231 (279)
Q Consensus 188 ~~~~~~~~~~~~l~~~g~~~~~w~~~~~~~~~~y~~ava~~~~~ 231 (279)
+.+... +...+..+.+ ++..+|||...|=
T Consensus 145 ~~~~~~--------------~~~~~~~~~~-~~l~~avc~~~~~ 173 (187)
T PRK10351 145 VDSTLP--------------SALSVSHCQL-ENLSLAVCTPTPF 173 (187)
T ss_pred cCccch--------------hhhhhhhhhc-CCEEEEEeecCce
Confidence 444321 1111222222 4666999998773
No 4
>PRK10251 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; Provisional
Probab=99.89 E-value=5.7e-23 Score=178.30 Aligned_cols=160 Identities=12% Similarity=0.106 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCeeEccCCCCCcEEecCCCCCCCCceeEeeccCCCeEEEEecCCccccccccc
Q 023684 43 LEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLESDKAGMDFPNFNFNVSHHGDYVAIASEPLCLVGLDIVS 122 (279)
Q Consensus 43 ~~dr~~~L~~R~l~r~~l~~~~g~~~~~i~~~~~~~GKP~l~~~~~~~~~~~~~fniSHs~~~v~~a~~~~~~VGVDIe~ 122 (279)
+++|.+|++||.+.|.+|.+. |.+. . ...+++|+|++.. ++.+|||||+++++++++. ..||||||.
T Consensus 47 ~kRr~EflAgR~~A~~aL~~l-g~~~--~-~~~g~~r~P~wP~--------gi~gSISHS~~~a~aav~~-~~VGIDIE~ 113 (207)
T PRK10251 47 RKRKAEHLAGRIAAVYALREY-GYKC--V-PAIGELRQPVWPA--------GVYGSISHCGTTALAVVSR-QPIGIDIEE 113 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCCC--C-CCcCCCCCccCCC--------CceeCcccccCeEEEEEeC-CCcEEEeee
Confidence 578999999999999999765 6543 2 2579999999974 5899999999999999986 689999999
Q ss_pred cccccCCChhHHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCCCCCCeEEEEecCCCceEEEe
Q 023684 123 CTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAYGLDKVEFHHTGWGNISVKI 202 (279)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~~l~~~~~~~~~~~~~~l~~ 202 (279)
+.... ...++.+++|+++|++.+.... ..+...|+.+||+|||++||+|..--+++...++...+.+...+++
T Consensus 114 ~~~~~-----~~~~i~~~ilt~~E~~~l~~~~--~~~~~~~tlifSAKEAlfKA~~~~~~~~F~~a~i~~~~~~~~~l~l 186 (207)
T PRK10251 114 IFSAQ-----TATELTDNIITPAEHERLADCG--LAFPLALTLAFSAKESAFKASEIQTLAGFLDYQIISWNKQQIIIHR 186 (207)
T ss_pred ccccc-----hHHHHHHHhCCHHHHHHHHcCC--cccccceeeeeeHHHHHHHhcCccccCCCCeEEEEEecCCEEEEEe
Confidence 75321 2347789999999999997632 2235678999999999999999985578888887665544555555
Q ss_pred cCCccccEEEEEEecCCCeEEEEE
Q 023684 203 DGETMTEWKFWLFELGKRHWASVA 226 (279)
Q Consensus 203 ~g~~~~~w~~~~~~~~~~y~~ava 226 (279)
.......| +.++++.++++|
T Consensus 187 ~~~l~~~~----~~~~~~~v~T~~ 206 (207)
T PRK10251 187 ENEFFAVH----WQIKEKIVITLC 206 (207)
T ss_pred ccccChhh----EEEECCEEEEec
Confidence 43333334 223455555543
No 5
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.64 E-value=2.5e-15 Score=120.67 Aligned_cols=112 Identities=19% Similarity=0.229 Sum_probs=85.2
Q ss_pred cccccccccccccCCChhHH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCCC--CCCeEEEE
Q 023684 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY--GLDKVEFH 191 (279)
Q Consensus 115 ~VGVDIe~~~~~~~~~~~~~-~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~--~l~~~~~~ 191 (279)
.|||||+.+.+... .+..+ .++++++||++|+..+.+..+...+.+.|+..||+|||++||+|.|++. .++++++.
T Consensus 4 giGiDiv~i~ri~~-~~~~~~~~f~~r~ft~~E~~~~~~~~~~~~~~~~la~rwaaKEA~~KAlg~g~~~~~~~~di~i~ 82 (122)
T PRK14659 4 GIGTDIVYIPRILN-LLKKFGNKFLNRVFSEKEIEDSLKYTSQEARARHFAKRFAAKEAYVKALGTGFGRGIKMKDISVY 82 (122)
T ss_pred EEEeeEEEehHHHH-HHHHhhHHHHHhcCCHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhccCcCcCccccEEEEE
Confidence 58999999986421 11222 3467999999999998643333446788999999999999999999864 47899999
Q ss_pred ecCCCceEEEecCCccccEEEEEEecCCCeEEEEEe
Q 023684 192 HTGWGNISVKIDGETMTEWKFWLFELGKRHWASVAK 227 (279)
Q Consensus 192 ~~~~~~~~l~~~g~~~~~w~~~~~~~~~~y~~ava~ 227 (279)
....+.+.+.++|.....|....+.-+.+|.+|++.
T Consensus 83 ~~~~g~P~v~l~~~~~~~~i~vSiSh~~~ya~A~vi 118 (122)
T PRK14659 83 NDLYGKPQITVSKSNIDHKIELSLSDDGDYAIAFVV 118 (122)
T ss_pred ECCCCCeEEEECCcccccEEEEEEEcCCCcEEEEEE
Confidence 887777888888864334555566668999999886
No 6
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP []. This superfamily consists of two subtypes: The ACPS type such as ACPS_ECOLI and the Sfp type such as SFP_BACSU. The structure of the Sfp type is known [], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion. ; GO: 0000287 magnesium ion binding, 0008897 holo-[acyl-carrier-protein] synthase activity, 0009059 macromolecule biosynthetic process; PDB: 3QMN_S 3GWM_A 3NFD_D 3NE9_C 1FTH_C 1FTE_C 1FTF_B 3HYK_B 2WDY_A 2WDS_A ....
Probab=99.62 E-value=3.2e-16 Score=123.32 Aligned_cols=107 Identities=25% Similarity=0.364 Sum_probs=72.6
Q ss_pred cccccccccccccCCChhHHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhcc-ccCCCCCC--eEEEE
Q 023684 115 LVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIG-IGVAYGLD--KVEFH 191 (279)
Q Consensus 115 ~VGVDIe~~~~~~~~~~~~~~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G-~GL~~~l~--~~~~~ 191 (279)
+||||||.+.+.. ...+.++++++||++|++++.+. +..++.+.|+.+||+|||++||+| .| +.+++ .+++.
T Consensus 1 ~iGiDIe~~~~~~---~~~~~~~~~~~~t~~E~~~l~~~-~~~~~~~~~~~~Wt~KEA~~Ka~g~~g-~~~~~~~~i~~~ 75 (115)
T PF01648_consen 1 GIGIDIEKIDRPR---ERRFEKFAERFFTPEELEWLRSL-PSEERLQAFTLLWTAKEAVYKALGLTG-SLDLSFREIELH 75 (115)
T ss_dssp EEEEEEEEHHHHH---HHHTTHHHHHHS-HHHHHHHHCT-SSHHHHHHHHHHHHHHHHHHHHHTTST-SSTSHGGGEEEE
T ss_pred CEEEEeeEecccc---ccCHHHHHHHhCCHHHHHHHHhC-CccchHHHHHHHHHHHHHHHHHhcccC-CcccccEEEEEE
Confidence 4899999998631 01234778999999999999865 446788999999999999999999 88 54455 45555
Q ss_pred ecCCCceEEEe----cCCccccEEEEEEecCCCeEEEEE
Q 023684 192 HTGWGNISVKI----DGETMTEWKFWLFELGKRHWASVA 226 (279)
Q Consensus 192 ~~~~~~~~l~~----~g~~~~~w~~~~~~~~~~y~~ava 226 (279)
....+...+.. .......|.+......+++.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 114 (115)
T PF01648_consen 76 KPPGGRPSLSLWASWIFDGDKIWRFHVSISHDEDYAAAF 114 (115)
T ss_dssp ESTTSCEEEEEHHHHHHHHTTTEEEEEEEEEESSEEEEE
T ss_pred cCCCCCeEEEEeHHhhhhhcCceEEEEEEEeCCCEEEEE
Confidence 55444444432 112345688877666444444443
No 7
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.50 E-value=1.1e-13 Score=111.74 Aligned_cols=108 Identities=19% Similarity=0.209 Sum_probs=80.4
Q ss_pred cccccccccccccCCChhH-HHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCCC--CCCeEEEE
Q 023684 115 LVGLDIVSCTIPLRETIPE-FVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY--GLDKVEFH 191 (279)
Q Consensus 115 ~VGVDIe~~~~~~~~~~~~-~~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~--~l~~~~~~ 191 (279)
.|||||+.+.+... .+.. ..++++++||++|++++.+..+ ..+.|+..|++|||++||+|.|+.. .+.++++.
T Consensus 4 giGiDIv~i~Ri~~-~~~~~~~~f~~rift~~E~~~~~~~~~---~~~~~a~rwAaKEA~~KAlg~g~~~~~~~~diei~ 79 (126)
T PRK14656 4 GTGVDIVDISRFER-FVDEGNVALLERIFTPHEQEYCAGKKH---SAQHYALRFAAKEAFLKALGTGLRDGISWHDMEVV 79 (126)
T ss_pred EEeeeEEEchHHHH-HHhhhhhHHHHHhCCHHHHHHHHcCCc---HHHHHHHHhHHHHHHHHHhccCCCCCceeeEEEEE
Confidence 48999999986431 1111 1346799999999999975432 2457999999999999999999854 56789988
Q ss_pred ecCCCceEEEecCC--------ccccEEEEEEecCCCeEEEEEe
Q 023684 192 HTGWGNISVKIDGE--------TMTEWKFWLFELGKRHWASVAK 227 (279)
Q Consensus 192 ~~~~~~~~l~~~g~--------~~~~w~~~~~~~~~~y~~ava~ 227 (279)
....+.+.+.+.|. ....|++.... +.+|.+|+|.
T Consensus 80 ~~~~g~P~v~l~g~~~~~~~~~~~~~i~vSiSH-~~~~a~A~vi 122 (126)
T PRK14656 80 NDQLGKPELRLYGRALELFAQAGLSKTFLSLSH-DGGCAVAMVV 122 (126)
T ss_pred ECCCCCeEEEECHHHHHHHHHcCCCeEEEEEEc-CCCcEEEEEE
Confidence 88777778887774 23456665544 7899999886
No 8
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain. This alignment models a domain active in transferring the phophopantethiene prosthetic group to its attachment site on enzymes and carrier proteins. Many members of this family are small proteins that act on the acyl carrier protein involved in fatty acid biosynthesis. Some members are domains of larger proteins involved specialized pathways for the synthesis of unusual molecules including polyketides, atypical fatty acids, and antibiotics.
Probab=99.44 E-value=9.7e-13 Score=106.30 Aligned_cols=107 Identities=21% Similarity=0.260 Sum_probs=77.1
Q ss_pred ccccccccccccccCCChhHHH----HHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCCC---CCC
Q 023684 114 CLVGLDIVSCTIPLRETIPEFV----QNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY---GLD 186 (279)
Q Consensus 114 ~~VGVDIe~~~~~~~~~~~~~~----~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~---~l~ 186 (279)
..||||||.+.+. .... ++++++||+.|++.+... +...+...|+..||+|||++||+|.|++. .++
T Consensus 3 ~~iGiDIe~i~~~-----~~~~~~~~~~~~~~~~~~E~~~~~~~-~~~~~~~~~~~~wsaKEA~~Ka~g~g~~~~~~~~~ 76 (128)
T TIGR00556 3 VGIGIDIVEIKRI-----AEQVERSGTFAERFFTPSEIEDYCKL-SPKSQTESLAGRWAAKEAFIKALGKGISLGELLFT 76 (128)
T ss_pred cceeeeEEEehHH-----HHHHHhhhhHHHHcCCHHHHHHHHhC-ChhHHHHHHHHHHHHHHHHHHHhccCcCCCCCccc
Confidence 4799999999753 2223 668999999999977653 33445668999999999999999999865 678
Q ss_pred eEEEEecCCCceEEEecCCc--------cccEEEEEEecCCCeEEEEEe
Q 023684 187 KVEFHHTGWGNISVKIDGET--------MTEWKFWLFELGKRHWASVAK 227 (279)
Q Consensus 187 ~~~~~~~~~~~~~l~~~g~~--------~~~w~~~~~~~~~~y~~ava~ 227 (279)
++++.....+...+.+.+.- ...+.+.. .-+.+|..|.+.
T Consensus 77 ~~~i~~~~~g~p~~~l~~~~~~~~~~~~~~~~~lSi-sh~~~~a~a~~i 124 (128)
T TIGR00556 77 DIEIVKDLKGAPRVCLIGEAAKDAEKLGVCSVHVSI-SHDKEYAAAQVI 124 (128)
T ss_pred eEEEEeCCCCCcEEEECHHHHHHHHHcCCCeEEEEE-EcCCCcEEEEEE
Confidence 88888776566666666531 22344433 336777777764
No 9
>COG2977 EntD Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.43 E-value=3.1e-12 Score=110.87 Aligned_cols=147 Identities=16% Similarity=0.189 Sum_probs=106.6
Q ss_pred cCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeEccCCCCCcEEecCCCCCCCCceeEeeccCCCeE
Q 023684 27 YLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLESDKAGMDFPNFNFNVSHHGDYV 106 (279)
Q Consensus 27 ~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g~~~~~i~~~~~~~GKP~l~~~~~~~~~~~~~fniSHs~~~v 106 (279)
.+++.+.+ .+.+- .+++|.++++||...|++|.+ +|+ .+..+.+++.|.|.+.+ ++.=||||+++++
T Consensus 35 ~~~p~~p~-~i~~a-v~KRkaEflAgR~cA~~AL~~-lg~--~~~Pi~~G~~raPlWP~--------gvvGSIsH~~~~A 101 (228)
T COG2977 35 LWLPEEPP-LIARA-VPKRKAEFLAGRICARQALRE-LGV--ADVPILRGEDRAPLWPA--------GVVGSISHCDGTA 101 (228)
T ss_pred hcCCCCcc-hhhhh-hHHHHHHHHHHHHHHHHHHHH-hCC--CCCCcccCCCCCCCCCC--------cceEEeeccCCee
Confidence 34444443 33332 367889999999999999965 453 45678889999999975 6899999999999
Q ss_pred EEEecC--C-ccccccccccccccCCChhHHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhc--cccC
Q 023684 107 AIASEP--L-CLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAI--GIGV 181 (279)
Q Consensus 107 ~~a~~~--~-~~VGVDIe~~~~~~~~~~~~~~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~--G~GL 181 (279)
++++++ . ..||||||....-. +--++...+.|++|+..+....+. .....+.+.+.|||..||. -++-
T Consensus 102 ~Avv~~~~~~~~iGIDiE~~~~~~-----~a~ei~~~I~t~~E~~~l~~~~~~--~~~~~tLlFsAKESlfKA~yP~~~r 174 (228)
T COG2977 102 LAVVARRGRVRSIGIDIEPHESLP-----TAREIADIIITPAERARLARAGLA--FLLALTLLFSAKESLFKALYPLVKR 174 (228)
T ss_pred eEeeecccccccceeeccccccCc-----chhHHHHHhCCHHHHHHHhhcccc--hhhhhhhhhhhhHHHHHhhhhhhhh
Confidence 888875 3 67999999987532 223577889999999998764332 2233557899999999998 3444
Q ss_pred CCCCCeEEEEec
Q 023684 182 AYGLDKVEFHHT 193 (279)
Q Consensus 182 ~~~l~~~~~~~~ 193 (279)
-.++.+.++...
T Consensus 175 ~~gFedA~i~~~ 186 (228)
T COG2977 175 WLGFEDAQISSD 186 (228)
T ss_pred hcCchhheeeec
Confidence 445555555443
No 10
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.41 E-value=2.1e-12 Score=103.87 Aligned_cols=106 Identities=22% Similarity=0.221 Sum_probs=78.3
Q ss_pred cccccccccccccCCChhHH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCCC--CCCeEEEE
Q 023684 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY--GLDKVEFH 191 (279)
Q Consensus 115 ~VGVDIe~~~~~~~~~~~~~-~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~--~l~~~~~~ 191 (279)
.|||||+.+.+... .+..+ .++.+++||++|++++.+. + ...+...|+.|||++||+|.|+.. .++++++.
T Consensus 4 giGvDIv~i~ri~~-~~~~~~~~f~~rift~~E~~~~~~~--~---~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~ 77 (123)
T PRK14657 4 GLGIDITELDRIAK-ALERFGDRFARRILHPAELAAMPAA--P---VAFLAGRFAAKEAAVKALGTGFSQGIGPRDIEVG 77 (123)
T ss_pred EEEEeEEEcHHHHH-HHHhcChhHHHhCCCHHHHHHHHcC--c---HHHHHHHHHHHHHHHHHhccCcCCCCCceeEEEE
Confidence 48999999975321 11111 1356999999999998753 2 467788999999999999999864 56899998
Q ss_pred ecCCCceEEEecCC--------ccccEEEEEEecCCCeEEEEEe
Q 023684 192 HTGWGNISVKIDGE--------TMTEWKFWLFELGKRHWASVAK 227 (279)
Q Consensus 192 ~~~~~~~~l~~~g~--------~~~~w~~~~~~~~~~y~~ava~ 227 (279)
....+.+.+.+.|. ....|++.... +.+|.+|++.
T Consensus 78 ~~~~g~P~v~l~g~~~~~~~~~~~~~~~vSiSH-~~~~aiA~vi 120 (123)
T PRK14657 78 VLPAGAPQLVLHGKALARAEALGATSTHVSLTH-GRDTAAAVVV 120 (123)
T ss_pred ECCCCCcEEEEChHHHHHHHHcCCCeEEEEEEc-CCCcEEEEEE
Confidence 88777778877774 23456665544 7899999875
No 11
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.41 E-value=1.2e-12 Score=105.53 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=81.2
Q ss_pred cccccccccccccCCChhHH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCC--CCCCeEEEE
Q 023684 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVA--YGLDKVEFH 191 (279)
Q Consensus 115 ~VGVDIe~~~~~~~~~~~~~-~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~--~~l~~~~~~ 191 (279)
.|||||+.+.+.. ..+..+ .+.++++||+.|++++.+.. ...+.|...|+.|||++||+|+|++ ..++++++.
T Consensus 4 giG~DIv~i~Ri~-~~~~~~~~~fl~rift~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~diei~ 79 (125)
T PRK14660 4 GTGVDIVEVERIA-RSIERHGDRFLRRIYTPGEIAYCTSKA---NRAERLAARFAAKEAVMKAIGTGLREGVRWTDFEVC 79 (125)
T ss_pred EEeEeEEEcHHHH-HHHHHhhhHHHHHhCCHHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHhccCcCCCccceEEEEE
Confidence 4899999998642 112222 24679999999999986432 2467899999999999999999985 578899999
Q ss_pred ecCCCceEEEecCC--------ccccEEEEEEecCCCeEEEEEe
Q 023684 192 HTGWGNISVKIDGE--------TMTEWKFWLFELGKRHWASVAK 227 (279)
Q Consensus 192 ~~~~~~~~l~~~g~--------~~~~w~~~~~~~~~~y~~ava~ 227 (279)
....+.+.+.+.|. ....+++.... +.+|.+|++.
T Consensus 80 ~~~~G~P~v~l~g~~~~~~~~~~~~~i~lSiSH-~~~~A~A~vi 122 (125)
T PRK14660 80 RDERGRPTVRLHGRAAEIAAALGATRIHLSLSH-TQEYAVAQVI 122 (125)
T ss_pred ECCCCCceEEEChHHHHHHHHcCCCeEEEEEEc-CCCcEEEEEE
Confidence 88777778888774 23456664444 7899999875
No 12
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.39 E-value=2.4e-12 Score=107.71 Aligned_cols=100 Identities=18% Similarity=0.160 Sum_probs=75.4
Q ss_pred cccccccccccccCCChhHHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccC-CCCCCeEEEEec
Q 023684 115 LVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGV-AYGLDKVEFHHT 193 (279)
Q Consensus 115 ~VGVDIe~~~~~~~~~~~~~~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL-~~~l~~~~~~~~ 193 (279)
.|||||+.+.+.. ..+++++||+.|++++.+.. .+.+.|+..||+|||++||+|+|+ +..++++++..
T Consensus 4 GIGiDIveI~Ri~-------e~Fl~RifT~~E~~~~~~~~---~~~~~lAgrwAaKEAv~KAlGtGl~~vsf~DIEI~~- 72 (169)
T PRK14661 4 GVGIDVLEVERVP-------EKFAERILGESEKRLFLTRK---RRREFIAGRFALKEAFFKALGTGLNGHSFTDVEFLE- 72 (169)
T ss_pred EEEEeEEEEEchH-------HHHHHHcCCHHHHHHHHhcc---chhhhHHHHhHHHHHHHHHccCCcCCccceEEEEEc-
Confidence 5899999998642 14568999999999986532 346788899999999999999998 46799999974
Q ss_pred CCCceEEEecCCc--cccEEEEEEecCCCeEEEEEe
Q 023684 194 GWGNISVKIDGET--MTEWKFWLFELGKRHWASVAK 227 (279)
Q Consensus 194 ~~~~~~l~~~g~~--~~~w~~~~~~~~~~y~~ava~ 227 (279)
+.+.+.+.+.|.. ...+++.... +. |.+|++.
T Consensus 73 ~~G~P~v~l~g~~~~~~~i~VSISH-d~-yAiA~VI 106 (169)
T PRK14661 73 SNGKPVLCVHKDFGFFNYAHVSLSH-DR-FAVALVV 106 (169)
T ss_pred CCCCeEEEEccccCccceEEEEEec-cc-cEEEEEE
Confidence 4556677777643 2456665544 44 9888775
No 13
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=99.36 E-value=5.5e-12 Score=101.15 Aligned_cols=108 Identities=18% Similarity=0.137 Sum_probs=77.7
Q ss_pred cccccccccccccCCChhHH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCCC--CCCeEEEE
Q 023684 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAY--GLDKVEFH 191 (279)
Q Consensus 115 ~VGVDIe~~~~~~~~~~~~~-~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~--~l~~~~~~ 191 (279)
.||+||..+.+-.. .+..+ .+.++++||++|++++....+ +.+.|...|++|||++||+|.|++. .++++++.
T Consensus 3 giG~DIv~i~Ri~~-~~~~~~~~f~~ri~t~~E~~~~~~~~~---~~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~ 78 (121)
T TIGR00516 3 GIGLDIVEIARIES-MAGRQKMRFAERILSRSELDQYKELSE---KRKFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIR 78 (121)
T ss_pred EEEEeEEEHHHHHH-HHHhcccchHHHcCCHHHHHHHHhcCc---HHHHHHHHhHHHHHHHHHhccccCCCccceEEEEE
Confidence 48999999975321 11111 146799999999999875432 3577899999999999999999864 56899998
Q ss_pred ecCCCceEEEecCC-----ccccEEEEEEecCCCeEEEEEe
Q 023684 192 HTGWGNISVKIDGE-----TMTEWKFWLFELGKRHWASVAK 227 (279)
Q Consensus 192 ~~~~~~~~l~~~g~-----~~~~w~~~~~~~~~~y~~ava~ 227 (279)
....+.+.+.+... ....|.+.... +.+|.+|+|.
T Consensus 79 ~~~~G~P~v~~~~~~~~~~~~~~i~vSiSH-~~~~A~A~vi 118 (121)
T TIGR00516 79 KDQNGKPLITLSYIICTKLSIAAVHVSITH-TKEYAAAQVV 118 (121)
T ss_pred ECCCcCeEEEEcHHHHHHcCCCEEEEEEEc-CCCcEEEEEE
Confidence 87666666665421 12446555544 7899999885
No 14
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.32 E-value=1.7e-11 Score=97.32 Aligned_cols=107 Identities=14% Similarity=0.075 Sum_probs=74.9
Q ss_pred ccccccccccccccCCChhHHHHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCCCCCCeEEEEec
Q 023684 114 CLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAYGLDKVEFHHT 193 (279)
Q Consensus 114 ~~VGVDIe~~~~~~~~~~~~~~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~~l~~~~~~~~ 193 (279)
..||+||..+.+-... -.+.++++||++|++.+........+.+.+...|+.|||+.||+|+|+ .++++++...
T Consensus 3 ~~IGiDIvei~Ri~~~----~~~Fl~Rilt~~E~~~~~~~~~~~~~~~~lAgRfAaKEA~~KAlgtg~--~~~dieI~~~ 76 (115)
T PRK14658 3 LVHGIDIIEWNREELN----NPLFAKRILIDNELEYYFQLNSSREKKRYLASVFACKEAVMKALKLKY--GYGDILILKT 76 (115)
T ss_pred eeEEEEEEEehHHhhh----ChhHHHHcCCHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhCCCC--CceEEEEEEC
Confidence 3589999999864311 114568999999999987422112235678899999999999999987 4899999887
Q ss_pred CCCceEEEecCCccccEEEEEEecCCCeEEEEEeC
Q 023684 194 GWGNISVKIDGETMTEWKFWLFELGKRHWASVAKG 228 (279)
Q Consensus 194 ~~~~~~l~~~g~~~~~w~~~~~~~~~~y~~ava~~ 228 (279)
..+...+ +......++++.... +.+|.+|+|..
T Consensus 77 ~~G~p~~-~~~~~~~~i~lSISH-~~~~AiA~vI~ 109 (115)
T PRK14658 77 ENQRQVY-LNKILIKELELSISY-TETYIVASVVG 109 (115)
T ss_pred CCCCeEE-EecCCCcEEEEEEEc-CCCeEEEEEEE
Confidence 5544333 333333456654444 78999998864
No 15
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.29 E-value=1.3e-11 Score=99.25 Aligned_cols=109 Identities=16% Similarity=0.160 Sum_probs=79.6
Q ss_pred cccccccccccccCCChhHH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCC--CCCCeEEEE
Q 023684 115 LVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVA--YGLDKVEFH 191 (279)
Q Consensus 115 ~VGVDIe~~~~~~~~~~~~~-~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~--~~l~~~~~~ 191 (279)
.|||||+.+.+... .+..+ .++++++||++|++++... ..+.+.|...|++|||+.|++|.|+. ..++++++.
T Consensus 4 giGiDi~~i~r~~~-~~~~~~~~~~~r~l~~~E~~~~~~~---~~~~~~la~r~aaKEA~~Kalg~~~~~~~~~~~i~i~ 79 (126)
T PRK00070 4 GIGIDIVEIERIEK-ALERTGDRFAERVLTPKERAKFKSG---KRPAEFLAGRFAAKEAFSKALGTGIGKGVSFRDIEVL 79 (126)
T ss_pred EEEEeEEEhHHHHH-HHHhcchhHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHhccCcccceeeeEEEEE
Confidence 48999999986431 11112 2567899999999998532 23467888999999999999999986 468899998
Q ss_pred ecCCCceEEEecCCc--------cccEEEEEEecCCCeEEEEEeC
Q 023684 192 HTGWGNISVKIDGET--------MTEWKFWLFELGKRHWASVAKG 228 (279)
Q Consensus 192 ~~~~~~~~l~~~g~~--------~~~w~~~~~~~~~~y~~ava~~ 228 (279)
....+.+.+.+.|.. ...+++.... +.+|.+|+|+-
T Consensus 80 ~~~~G~P~l~l~g~~~~~~~~~~~~~~~iSISH-~~~~A~A~vi~ 123 (126)
T PRK00070 80 NDELGKPIVRLSGEAAERLEKLGGARIHLSISH-DGDYAVAFVIL 123 (126)
T ss_pred ECCCCCcEEEEChHHHHHHHHcCCCEEEEEEEc-CCCcEEEEEEE
Confidence 876667777776531 2346664444 78999998863
No 16
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=99.29 E-value=9.1e-12 Score=100.06 Aligned_cols=110 Identities=17% Similarity=0.196 Sum_probs=79.2
Q ss_pred ccccccccccccccCCChhHH-HHHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCC--CCCCeEEE
Q 023684 114 CLVGLDIVSCTIPLRETIPEF-VQNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVA--YGLDKVEF 190 (279)
Q Consensus 114 ~~VGVDIe~~~~~~~~~~~~~-~~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~--~~l~~~~~ 190 (279)
..||+||..+.+-. ..+..+ ...++++||+.|++......++ ...+...|++|||+.||+|+|++ ..++++++
T Consensus 3 ~gIG~DiveI~Ri~-~~~~r~g~~F~erilt~~E~~~~~~~~~~---~~~lAgrfAaKEA~~KAlgtgi~~~~~~~diei 78 (127)
T COG0736 3 IGIGIDIVEIERIE-KALERFGERFAERILTEEELEYYEKLKSR---AEFLAGRFAAKEAVSKALGTGIGKGVSFKDIEI 78 (127)
T ss_pred eEEeeeEEEeHHHH-HHHhhccchHHHHhCCHHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHhccCcccceeeeeEEE
Confidence 35899999997532 111122 2467899999999998765433 57788899999999999999996 47889999
Q ss_pred EecCCCceEEEecCCcc--------ccEEEEEEecCCCeEEEEEeC
Q 023684 191 HHTGWGNISVKIDGETM--------TEWKFWLFELGKRHWASVAKG 228 (279)
Q Consensus 191 ~~~~~~~~~l~~~g~~~--------~~w~~~~~~~~~~y~~ava~~ 228 (279)
..+..+.+.+.+.|... ...++... -+.+|.+|+|.-
T Consensus 79 ~~d~~g~P~v~~~~~~~~~~~~~~~~~i~lSIS-h~~~yA~A~vi~ 123 (127)
T COG0736 79 LNDELGKPTVRLSGEAAKALEKLGVANIHLSIS-HDRDYAIAVVIL 123 (127)
T ss_pred EEcCCCCcEEEECHHHHHHHHhcCCceEEEEEE-cCCCeEEEEEEE
Confidence 88877777888775211 12333333 377899999863
No 17
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.17 E-value=3.2e-10 Score=90.22 Aligned_cols=89 Identities=17% Similarity=0.113 Sum_probs=67.6
Q ss_pred HHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCC--CCCCeEEEEecCCCceEEEecCC----cccc
Q 023684 136 QNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVA--YGLDKVEFHHTGWGNISVKIDGE----TMTE 209 (279)
Q Consensus 136 ~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~--~~l~~~~~~~~~~~~~~l~~~g~----~~~~ 209 (279)
+..+++||+.|++++.+..+ ..+.|...|+.|||++||+|+|++ ..++++++.....+.+.+.+.|. ....
T Consensus 19 ~f~~rift~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlg~g~~~~i~~~dieI~~~~~G~P~i~l~g~~~~~~~~~ 95 (116)
T PRK14663 19 KFLEKILTPEEIELCLQKPQ---PVASIAGRFAAKEAVVKALGTGFSQGVHWKSFAILNDAAGRPFVKVIDDGCLPPGCV 95 (116)
T ss_pred HHHHHhCCHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHccCCCCCceeeEEEEEECCCCCcEEEEchhHhhcCCCE
Confidence 45689999999999865433 246888999999999999999984 56799999988777777777763 1234
Q ss_pred EEEEEEecCCCeEEEEEeC
Q 023684 210 WKFWLFELGKRHWASVAKG 228 (279)
Q Consensus 210 w~~~~~~~~~~y~~ava~~ 228 (279)
+++.... +.+|.+|+|.-
T Consensus 96 i~vSiSH-~~~~a~A~vi~ 113 (116)
T PRK14663 96 IKISISH-DRHSAVATALI 113 (116)
T ss_pred EEEEEEc-CCCeEEEEEEE
Confidence 5554433 78999998863
No 18
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.16 E-value=1.3e-10 Score=92.98 Aligned_cols=105 Identities=15% Similarity=0.072 Sum_probs=74.1
Q ss_pred cccccccccccccCCChhHHH-HHHhccCCHHHHHHHHhcCCchHHHHHHHHHHHHHHhhHhhccccCCCCCCeEEEEec
Q 023684 115 LVGLDIVSCTIPLRETIPEFV-QNFSSYFSSFEWDNILNAGTSDEILIEFYRYWCLKEAYVKAIGIGVAYGLDKVEFHHT 193 (279)
Q Consensus 115 ~VGVDIe~~~~~~~~~~~~~~-~~~~~~ft~~E~~~i~~~~~~~~~~~~f~~~WtlKEA~~Ka~G~GL~~~l~~~~~~~~ 193 (279)
.||+||..+.+-.. .+..+- +.++++||++|++++.+..+ ..+.+...|+.|||++||+|+|+ .++++++...
T Consensus 4 gIG~DIv~i~Ri~~-~~~r~~~~Fl~Ri~t~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlg~~~--~~~diei~~~ 77 (120)
T PRK14662 4 AIGHDLVEIARIRR-VLERHGERALERLFHPEELAYCLAKAD---PAPSLAARFAAKEAFQKCWPESH--GWREVWVERE 77 (120)
T ss_pred EEEeeeEEhHHHHH-HHHhhhhHHHHHcCCHHHHHHHHhcCC---cchhhhhHhHHHHHHHHHhcCCC--CceEEEEEcC
Confidence 58999999986431 111221 45689999999999865433 24678889999999999999985 5899999775
Q ss_pred CCCceEEEecCCc-------cccEEEEEEecCCCeEEEEEe
Q 023684 194 GWGNISVKIDGET-------MTEWKFWLFELGKRHWASVAK 227 (279)
Q Consensus 194 ~~~~~~l~~~g~~-------~~~w~~~~~~~~~~y~~ava~ 227 (279)
.+.+.+.+.|.. ....++. +.-+.+|.+|+|.
T Consensus 78 -~G~P~v~l~g~~~~~~~~~~~~~~lS-iSH~~~~A~A~vi 116 (120)
T PRK14662 78 -GARPVLGFAPKIAARMEEEGWVAHLS-LSHEKEHALAVVV 116 (120)
T ss_pred -CCCcEEEECHHHHHHHHhcCCeEEEE-EecCCCeEEEEEE
Confidence 567777777631 1133332 2337889999886
No 19
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=99.00 E-value=1.3e-09 Score=87.60 Aligned_cols=84 Identities=19% Similarity=0.293 Sum_probs=66.0
Q ss_pred HHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCCeeEccCCCCCcEEecCCC------CCC
Q 023684 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEITINRTIEGKPYLESDKA------GMD 91 (279)
Q Consensus 24 ~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g~------~~~~i~~~~~~~GKP~l~~~~~------~~~ 91 (279)
.+.+.|++.|++++. ...++.+++++|+++|.++.+.+|. .+.++.+..+++|||++...+. ...
T Consensus 26 ~~~r~l~~~E~~~~~---~~~~~~~~la~r~aaKEA~~Kalg~~~~~~~~~~~i~i~~~~~G~P~l~l~g~~~~~~~~~~ 102 (126)
T PRK00070 26 FAERVLTPKERAKFK---SGKRPAEFLAGRFAAKEAFSKALGTGIGKGVSFRDIEVLNDELGKPIVRLSGEAAERLEKLG 102 (126)
T ss_pred HHHHcCCHHHHHHHH---cCCCHHHHHHHHHHHHHHHHHHhccCcccceeeeEEEEEECCCCCcEEEEChHHHHHHHHcC
Confidence 466899999999983 3456789999999999999988863 3788999999999999974210 001
Q ss_pred CCceeEeeccCCCeEEEEe
Q 023684 92 FPNFNFNVSHHGDYVAIAS 110 (279)
Q Consensus 92 ~~~~~fniSHs~~~v~~a~ 110 (279)
.+.+++||||+++|+++.+
T Consensus 103 ~~~~~iSISH~~~~A~A~v 121 (126)
T PRK00070 103 GARIHLSISHDGDYAVAFV 121 (126)
T ss_pred CCEEEEEEEcCCCcEEEEE
Confidence 3579999999999986543
No 20
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.88 E-value=2.3e-08 Score=79.36 Aligned_cols=96 Identities=15% Similarity=0.168 Sum_probs=74.3
Q ss_pred EEEEECCCCCCChhcHHHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC--CCCCCeeEccCCCCCcEEe
Q 023684 7 RWVVDISKWDPTPHDFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG--IPFEEITINRTIEGKPYLE 84 (279)
Q Consensus 7 ~w~~d~~~w~~~~~~~~~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g--~~~~~i~~~~~~~GKP~l~ 84 (279)
+=++++++..- ..-.++.+.|++.|++.+.......++.++|++|...+.++.+.+| +.+.+|.+.+++.|+|++.
T Consensus 7 iDIvei~Ri~~--~~~~Fl~Rilt~~E~~~~~~~~~~~~~~~~lAgRfAaKEA~~KAlgtg~~~~dieI~~~~~G~p~~~ 84 (115)
T PRK14658 7 IDIIEWNREEL--NNPLFAKRILIDNELEYYFQLNSSREKKRYLASVFACKEAVMKALKLKYGYGDILILKTENQRQVYL 84 (115)
T ss_pred EEEEEehHHhh--hChhHHHHcCCHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhCCCCCceEEEEEECCCCCeEEE
Confidence 33455555431 1124677899999999998764444578999999999999999886 5789999999999999987
Q ss_pred cCCCCCCCCceeEeeccCCCeEE
Q 023684 85 SDKAGMDFPNFNFNVSHHGDYVA 107 (279)
Q Consensus 85 ~~~~~~~~~~~~fniSHs~~~v~ 107 (279)
... + ..++++||||+++|++
T Consensus 85 ~~~-~--~~~i~lSISH~~~~Ai 104 (115)
T PRK14658 85 NKI-L--IKELELSISYTETYIV 104 (115)
T ss_pred ecC-C--CcEEEEEEEcCCCeEE
Confidence 532 1 3579999999999985
No 21
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.63 E-value=2.9e-07 Score=73.85 Aligned_cols=84 Identities=21% Similarity=0.377 Sum_probs=68.2
Q ss_pred HHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC------CCCCCeeEccCCCCCcEEecCCCCCCCCceeE
Q 023684 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG------IPFEEITINRTIEGKPYLESDKAGMDFPNFNF 97 (279)
Q Consensus 24 ~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g------~~~~~i~~~~~~~GKP~l~~~~~~~~~~~~~f 97 (279)
.+.+.|+++|+..+.++.....+.+++++|+..|.++.+.+| +.+.++.+..++.|+|++.-.+.. ....++.
T Consensus 26 f~~r~ft~~E~~~~~~~~~~~~~~~~la~rwaaKEA~~KAlg~g~~~~~~~~di~i~~~~~g~P~v~l~~~~-~~~~i~v 104 (122)
T PRK14659 26 FLNRVFSEKEIEDSLKYTSQEARARHFAKRFAAKEAYVKALGTGFGRGIKMKDISVYNDLYGKPQITVSKSN-IDHKIEL 104 (122)
T ss_pred HHHhcCCHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhccCcCcCccccEEEEEECCCCCeEEEECCcc-cccEEEE
Confidence 467899999999987765555688899999999999988876 347899999999999999864211 1257899
Q ss_pred eeccCCCeEEE
Q 023684 98 NVSHHGDYVAI 108 (279)
Q Consensus 98 niSHs~~~v~~ 108 (279)
||||+++|++.
T Consensus 105 SiSh~~~ya~A 115 (122)
T PRK14659 105 SLSDDGDYAIA 115 (122)
T ss_pred EEEcCCCcEEE
Confidence 99999999863
No 22
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.60 E-value=3.4e-07 Score=73.80 Aligned_cols=82 Identities=13% Similarity=0.282 Sum_probs=65.5
Q ss_pred HHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC------CCCCCeeEccCCCCCcEEecCCC------CCC
Q 023684 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG------IPFEEITINRTIEGKPYLESDKA------GMD 91 (279)
Q Consensus 24 ~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g------~~~~~i~~~~~~~GKP~l~~~~~------~~~ 91 (279)
.+.+.|++.|++.+.+. .++.++|++|...|.++.+.+| +.+.++.+.+++.|||++.-.+. ...
T Consensus 26 fl~rift~~E~~~~~~~---~~~~~~lAgrfAaKEA~~KAlg~g~~~~~~~~diei~~~~~G~P~v~l~g~~~~~~~~~~ 102 (125)
T PRK14660 26 FLRRIYTPGEIAYCTSK---ANRAERLAARFAAKEAVMKAIGTGLREGVRWTDFEVCRDERGRPTVRLHGRAAEIAAALG 102 (125)
T ss_pred HHHHhCCHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHHhccCcCCCccceEEEEEECCCCCceEEEChHHHHHHHHcC
Confidence 46789999999988643 3578899999999999998875 46889999999999999965321 001
Q ss_pred CCceeEeeccCCCeEEE
Q 023684 92 FPNFNFNVSHHGDYVAI 108 (279)
Q Consensus 92 ~~~~~fniSHs~~~v~~ 108 (279)
...+++||||+++|++.
T Consensus 103 ~~~i~lSiSH~~~~A~A 119 (125)
T PRK14660 103 ATRIHLSLSHTQEYAVA 119 (125)
T ss_pred CCeEEEEEEcCCCcEEE
Confidence 35689999999999853
No 23
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism]
Probab=98.59 E-value=2.9e-07 Score=74.09 Aligned_cols=82 Identities=24% Similarity=0.353 Sum_probs=66.9
Q ss_pred HHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCC------CCCCeeEccCCCCCcEEecCCCC------C
Q 023684 23 SFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI------PFEEITINRTIEGKPYLESDKAG------M 90 (279)
Q Consensus 23 ~~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g~------~~~~i~~~~~~~GKP~l~~~~~~------~ 90 (279)
.++.+.|++.|++...+... +.++|++|+.++.++++.+|. .+.++++.+++.|||++.-.+.- .
T Consensus 25 ~F~erilt~~E~~~~~~~~~---~~~~lAgrfAaKEA~~KAlgtgi~~~~~~~diei~~d~~g~P~v~~~~~~~~~~~~~ 101 (127)
T COG0736 25 RFAERILTEEELEYYEKLKS---RAEFLAGRFAAKEAVSKALGTGIGKGVSFKDIEILNDELGKPTVRLSGEAAKALEKL 101 (127)
T ss_pred hHHHHhCCHHHHHHHHhcCC---chhHHHHHHHHHHHHHHHhccCcccceeeeeEEEEEcCCCCcEEEECHHHHHHHHhc
Confidence 36778999999999988753 499999999999999998864 67899999999999999874200 0
Q ss_pred CCCceeEeeccCCCeEE
Q 023684 91 DFPNFNFNVSHHGDYVA 107 (279)
Q Consensus 91 ~~~~~~fniSHs~~~v~ 107 (279)
-..++++||||+.+|++
T Consensus 102 ~~~~i~lSISh~~~yA~ 118 (127)
T COG0736 102 GVANIHLSISHDRDYAI 118 (127)
T ss_pred CCceEEEEEEcCCCeEE
Confidence 01369999999999985
No 24
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase. Formerly dpj. This enzyme adds the prosthetic group, phosphopantethiene, to the acyl carrier protein (ACP) apo-enzyme to generate the holo-enzyme. Related phosphopantethiene--protein transferases also exist. There is an orthologous domain in eukaryotic proteins.
Probab=98.58 E-value=4.1e-07 Score=72.90 Aligned_cols=83 Identities=17% Similarity=0.382 Sum_probs=65.6
Q ss_pred HHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC------CCCCCeeEccCCCCCcEEecCCC---CCCCCc
Q 023684 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG------IPFEEITINRTIEGKPYLESDKA---GMDFPN 94 (279)
Q Consensus 24 ~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g------~~~~~i~~~~~~~GKP~l~~~~~---~~~~~~ 94 (279)
.+.+.|++.|++.+.+.. ++.++|++|+..|.++.+.+| +.+.++++.+++.|+|++..... ......
T Consensus 25 f~~ri~t~~E~~~~~~~~---~~~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~~~~~G~P~v~~~~~~~~~~~~~~ 101 (121)
T TIGR00516 25 FAERILSRSELDQYKELS---EKRKFLAGRFAAKEAFSKAFGTGIGRQLSFQDIEIRKDQNGKPLITLSYIICTKLSIAA 101 (121)
T ss_pred hHHHcCCHHHHHHHHhcC---cHHHHHHHHhHHHHHHHHHhccccCCCccceEEEEEECCCcCeEEEEcHHHHHHcCCCE
Confidence 567899999999886643 478999999999999988875 46789999999999999963200 001357
Q ss_pred eeEeeccCCCeEEEE
Q 023684 95 FNFNVSHHGDYVAIA 109 (279)
Q Consensus 95 ~~fniSHs~~~v~~a 109 (279)
++.||||+++|++..
T Consensus 102 i~vSiSH~~~~A~A~ 116 (121)
T TIGR00516 102 VHVSITHTKEYAAAQ 116 (121)
T ss_pred EEEEEEcCCCcEEEE
Confidence 999999999998643
No 25
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.48 E-value=1e-06 Score=70.02 Aligned_cols=83 Identities=13% Similarity=0.208 Sum_probs=64.3
Q ss_pred HHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC------CCCCCeeEccCCCCCcEEecCCCCC--CCCce
Q 023684 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG------IPFEEITINRTIEGKPYLESDKAGM--DFPNF 95 (279)
Q Consensus 24 ~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g------~~~~~i~~~~~~~GKP~l~~~~~~~--~~~~~ 95 (279)
.+.+.|++.|++.+.+.. +..+++++|+..|.++.+.+| +.+.++++..++.|+|++.-.+... ....+
T Consensus 20 f~~rift~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAlg~g~~~~i~~~dieI~~~~~G~P~i~l~g~~~~~~~~~i 96 (116)
T PRK14663 20 FLEKILTPEEIELCLQKP---QPVASIAGRFAAKEAVVKALGTGFSQGVHWKSFAILNDAAGRPFVKVIDDGCLPPGCVI 96 (116)
T ss_pred HHHHhCCHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHccCCCCCceeeEEEEEECCCCCcEEEEchhHhhcCCCEE
Confidence 456899999999876543 356899999999999988875 4578999999999999996532100 12468
Q ss_pred eEeeccCCCeEEEE
Q 023684 96 NFNVSHHGDYVAIA 109 (279)
Q Consensus 96 ~fniSHs~~~v~~a 109 (279)
++||||+++|++..
T Consensus 97 ~vSiSH~~~~a~A~ 110 (116)
T PRK14663 97 KISISHDRHSAVAT 110 (116)
T ss_pred EEEEEcCCCeEEEE
Confidence 99999999998643
No 26
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.41 E-value=1.7e-06 Score=69.32 Aligned_cols=81 Identities=11% Similarity=0.067 Sum_probs=62.8
Q ss_pred HHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC--CCCCCeeEccCCCCCcEEecCCC-----CCCCCcee
Q 023684 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG--IPFEEITINRTIEGKPYLESDKA-----GMDFPNFN 96 (279)
Q Consensus 24 ~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g--~~~~~i~~~~~~~GKP~l~~~~~-----~~~~~~~~ 96 (279)
++.+.|++.|++.+.... ++.++|++|...|.++.+.+| +.|.+|.+.++ .|||++.-.+. ......++
T Consensus 26 Fl~Ri~t~~E~~~~~~~~---~~~~~lAgrfAaKEA~~KAlg~~~~~~diei~~~-~G~P~v~l~g~~~~~~~~~~~~~~ 101 (120)
T PRK14662 26 ALERLFHPEELAYCLAKA---DPAPSLAARFAAKEAFQKCWPESHGWREVWVERE-GARPVLGFAPKIAARMEEEGWVAH 101 (120)
T ss_pred HHHHcCCHHHHHHHHhcC---CcchhhhhHhHHHHHHHHHhcCCCCceEEEEEcC-CCCcEEEECHHHHHHHHhcCCeEE
Confidence 467899999999876433 467899999999999988875 78999999886 89999964220 00013679
Q ss_pred EeeccCCCeEEE
Q 023684 97 FNVSHHGDYVAI 108 (279)
Q Consensus 97 fniSHs~~~v~~ 108 (279)
+||||+++|++.
T Consensus 102 lSiSH~~~~A~A 113 (120)
T PRK14662 102 LSLSHEKEHALA 113 (120)
T ss_pred EEEecCCCeEEE
Confidence 999999999853
No 27
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.33 E-value=4.4e-06 Score=67.15 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=63.6
Q ss_pred HHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC------CCCCCeeEccCCCCCcEEecCCC------CCC
Q 023684 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG------IPFEEITINRTIEGKPYLESDKA------GMD 91 (279)
Q Consensus 24 ~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g------~~~~~i~~~~~~~GKP~l~~~~~------~~~ 91 (279)
.+.+.+++.|++.+.+. ..+++++|+..|.++.+.+| +.+.++.+..+++|+|++.-.+. ...
T Consensus 26 f~~rift~~E~~~~~~~-----~~~~lA~rwAaKEA~~KAlg~g~~~~~~~~diei~~~~~g~P~v~l~g~~~~~~~~~~ 100 (123)
T PRK14657 26 FARRILHPAELAAMPAA-----PVAFLAGRFAAKEAAVKALGTGFSQGIGPRDIEVGVLPAGAPQLVLHGKALARAEALG 100 (123)
T ss_pred HHHhCCCHHHHHHHHcC-----cHHHHHHHHHHHHHHHHHhccCcCCCCCceeEEEEECCCCCcEEEEChHHHHHHHHcC
Confidence 46789999999988653 47899999999999988875 46789999999999999963210 011
Q ss_pred CCceeEeeccCCCeEEEE
Q 023684 92 FPNFNFNVSHHGDYVAIA 109 (279)
Q Consensus 92 ~~~~~fniSHs~~~v~~a 109 (279)
...+++||||+++|++..
T Consensus 101 ~~~~~vSiSH~~~~aiA~ 118 (123)
T PRK14657 101 ATSTHVSLTHGRDTAAAV 118 (123)
T ss_pred CCeEEEEEEcCCCcEEEE
Confidence 357899999999998543
No 28
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=98.26 E-value=7.6e-06 Score=66.02 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=64.2
Q ss_pred HHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC------CCCCCeeEccCCCCCcEEecCCC------CCC
Q 023684 24 FALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG------IPFEEITINRTIEGKPYLESDKA------GMD 91 (279)
Q Consensus 24 ~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g------~~~~~i~~~~~~~GKP~l~~~~~------~~~ 91 (279)
.+.+.|++.|++.+.+.. +..+++++|+..|.++.+.+| +.+.++.+.+++.|+|++.-.+. ...
T Consensus 26 f~~rift~~E~~~~~~~~---~~~~~~a~rwAaKEA~~KAlg~g~~~~~~~~diei~~~~~g~P~v~l~g~~~~~~~~~~ 102 (126)
T PRK14656 26 LLERIFTPHEQEYCAGKK---HSAQHYALRFAAKEAFLKALGTGLRDGISWHDMEVVNDQLGKPELRLYGRALELFAQAG 102 (126)
T ss_pred HHHHhCCHHHHHHHHcCC---cHHHHHHHHhHHHHHHHHHhccCCCCCceeeEEEEEECCCCCeEEEECHHHHHHHHHcC
Confidence 567899999999987643 346689999999999988875 35688999999999999964210 001
Q ss_pred CCceeEeeccCCCeEEE
Q 023684 92 FPNFNFNVSHHGDYVAI 108 (279)
Q Consensus 92 ~~~~~fniSHs~~~v~~ 108 (279)
...+++||||+++|++.
T Consensus 103 ~~~i~vSiSH~~~~a~A 119 (126)
T PRK14656 103 LSKTFLSLSHDGGCAVA 119 (126)
T ss_pred CCeEEEEEEcCCCcEEE
Confidence 35789999999999853
No 29
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional
Probab=97.92 E-value=6.7e-05 Score=63.16 Aligned_cols=80 Identities=19% Similarity=0.258 Sum_probs=61.6
Q ss_pred HHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC-----CCCCCeeEccCCCCCcEEecCCCCCCCCceeE
Q 023684 23 SFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG-----IPFEEITINRTIEGKPYLESDKAGMDFPNFNF 97 (279)
Q Consensus 23 ~~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g-----~~~~~i~~~~~~~GKP~l~~~~~~~~~~~~~f 97 (279)
..+.+.+++.|++.+.+- .++.+++++|+.+|.++.+.+| +.+.+|.+. ++.|+|++...+.-.....+++
T Consensus 18 ~Fl~RifT~~E~~~~~~~---~~~~~~lAgrwAaKEAv~KAlGtGl~~vsf~DIEI~-~~~G~P~v~l~g~~~~~~~i~V 93 (169)
T PRK14661 18 KFAERILGESEKRLFLTR---KRRREFIAGRFALKEAFFKALGTGLNGHSFTDVEFL-ESNGKPVLCVHKDFGFFNYAHV 93 (169)
T ss_pred HHHHHcCCHHHHHHHHhc---cchhhhHHHHhHHHHHHHHHccCCcCCccceEEEEE-cCCCCeEEEEccccCccceEEE
Confidence 367789999999988652 3578899999999999988875 468899997 5789999986321101246899
Q ss_pred eeccCCCeEE
Q 023684 98 NVSHHGDYVA 107 (279)
Q Consensus 98 niSHs~~~v~ 107 (279)
||||++ |++
T Consensus 94 SISHd~-yAi 102 (169)
T PRK14661 94 SLSHDR-FAV 102 (169)
T ss_pred EEeccc-cEE
Confidence 999999 764
No 30
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain. This alignment models a domain active in transferring the phophopantethiene prosthetic group to its attachment site on enzymes and carrier proteins. Many members of this family are small proteins that act on the acyl carrier protein involved in fatty acid biosynthesis. Some members are domains of larger proteins involved specialized pathways for the synthesis of unusual molecules including polyketides, atypical fatty acids, and antibiotics.
Probab=97.56 E-value=0.00076 Score=54.18 Aligned_cols=86 Identities=17% Similarity=0.253 Sum_probs=64.2
Q ss_pred HHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCC-------CCCCeeEccCCCCCcEEecCCC------C
Q 023684 23 SFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGI-------PFEEITINRTIEGKPYLESDKA------G 89 (279)
Q Consensus 23 ~~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g~-------~~~~i~~~~~~~GKP~l~~~~~------~ 89 (279)
..+.+.+++.|++.+.... ...+.+++++++.+|.++.+.+|. ++.++.+..++.|+|++.-.+. .
T Consensus 24 ~~~~~~~~~~E~~~~~~~~-~~~~~~~~~~~wsaKEA~~Ka~g~g~~~~~~~~~~~~i~~~~~g~p~~~l~~~~~~~~~~ 102 (128)
T TIGR00556 24 TFAERFFTPSEIEDYCKLS-PKSQTESLAGRWAAKEAFIKALGKGISLGELLFTDIEIVKDLKGAPRVCLIGEAAKDAEK 102 (128)
T ss_pred hHHHHcCCHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHhccCcCCCCCccceEEEEeCCCCCcEEEECHHHHHHHHH
Confidence 3477899999999777643 345677999999999999877642 4678899999999999864210 0
Q ss_pred CCCCceeEeeccCCCeEEEE
Q 023684 90 MDFPNFNFNVSHHGDYVAIA 109 (279)
Q Consensus 90 ~~~~~~~fniSHs~~~v~~a 109 (279)
.....++.||||+.+++.+.
T Consensus 103 ~~~~~~~lSish~~~~a~a~ 122 (128)
T TIGR00556 103 LGVCSVHVSISHDKEYAAAQ 122 (128)
T ss_pred cCCCeEEEEEEcCCCcEEEE
Confidence 01246789999999998644
No 31
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding. This post-translational modification renders holo-ACP capable of acyl group activation via thioesterification of the cysteamine thiol of 4'-PP []. This superfamily consists of two subtypes: The ACPS type such as ACPS_ECOLI and the Sfp type such as SFP_BACSU. The structure of the Sfp type is known [], which shows the active site accommodates a magnesium ion. The most highly conserved regions of the alignment are involved in binding the magnesium ion. ; GO: 0000287 magnesium ion binding, 0008897 holo-[acyl-carrier-protein] synthase activity, 0009059 macromolecule biosynthetic process; PDB: 3QMN_S 3GWM_A 3NFD_D 3NE9_C 1FTH_C 1FTE_C 1FTF_B 3HYK_B 2WDY_A 2WDS_A ....
Probab=96.69 E-value=0.007 Score=46.93 Aligned_cols=87 Identities=25% Similarity=0.348 Sum_probs=65.9
Q ss_pred HHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhC------CCCCCeeEccCCCCCcEEec----CCCCCCC
Q 023684 23 SFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLG------IPFEEITINRTIEGKPYLES----DKAGMDF 92 (279)
Q Consensus 23 ~~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g------~~~~~i~~~~~~~GKP~l~~----~~~~~~~ 92 (279)
..+.+.++++|+..+.+... .++.+++...+.+|.++.+.+| ....++.+...+.|+|++.. ...+...
T Consensus 19 ~~~~~~~t~~E~~~l~~~~~-~~~~~~~~~~Wt~KEA~~Ka~g~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (115)
T PF01648_consen 19 KFAERFFTPEELEWLRSLPS-EERLQAFTLLWTAKEAVYKALGLTGSLDLSFREIELHKPPGGRPSLSLWASWIFDGDKI 97 (115)
T ss_dssp HHHHHHS-HHHHHHHHCTSS-HHHHHHHHHHHHHHHHHHHHHTTSTSSTSHGGGEEEEESTTSCEEEEEHHHHHHHHTTT
T ss_pred HHHHHhCCHHHHHHHHhCCc-cchHHHHHHHHHHHHHHHHHhcccCCcccccEEEEEEcCCCCCeEEEEeHHhhhhhcCc
Confidence 34556899999999998876 7889999999999999988888 23457788888999999752 0000113
Q ss_pred CceeEeeccCCCeEEEEe
Q 023684 93 PNFNFNVSHHGDYVAIAS 110 (279)
Q Consensus 93 ~~~~fniSHs~~~v~~a~ 110 (279)
..++.++||.++|+++.|
T Consensus 98 ~~~~~~~~~~~~~~~a~v 115 (115)
T PF01648_consen 98 WRFHVSISHDEDYAAAFV 115 (115)
T ss_dssp EEEEEEEEEESSEEEEEE
T ss_pred eEEEEEEEeCCCEEEEEC
Confidence 468889999999998764
No 32
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=81.86 E-value=4.2 Score=26.89 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeEccCCCCCcEEec
Q 023684 28 LLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIEGKPYLES 85 (279)
Q Consensus 28 ~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g~~~~~i~~~~~~~GKP~l~~ 85 (279)
+|+++|...+..|++...+.++|-. .| |.+..++.|+|.+.-
T Consensus 2 fLT~~El~elTG~k~~~~Q~~~L~~-----------~G-----i~~~~~~~G~p~V~r 43 (47)
T PF13986_consen 2 FLTDEELQELTGYKRPSKQIRWLRR-----------NG-----IPFVVRADGRPIVTR 43 (47)
T ss_pred CCCHHHHHHHHCCCCHHHHHHHHHH-----------CC-----CeeEECCCCCEEeeH
Confidence 6899999999999987777666532 24 457788899998763
No 33
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=71.61 E-value=1.9 Score=32.70 Aligned_cols=16 Identities=44% Similarity=1.047 Sum_probs=13.2
Q ss_pred HHHHHHHHhhHhhccc
Q 023684 164 YRYWCLKEAYVKAIGI 179 (279)
Q Consensus 164 ~~~WtlKEA~~Ka~G~ 179 (279)
..-||+||||+.|.|.
T Consensus 56 Le~~aLKeafL~Al~~ 71 (103)
T PF11572_consen 56 LESWALKEAFLRALGM 71 (103)
T ss_dssp E-SHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 3459999999999985
No 34
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=35.34 E-value=1.1e+02 Score=25.17 Aligned_cols=66 Identities=11% Similarity=0.101 Sum_probs=44.7
Q ss_pred ceEEEEEECCCCCCChhcHHHHhcCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeEc
Q 023684 4 GVQRWVVDISKWDPTPHDFSFALYLLPQRHHSSIIKYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITIN 74 (279)
Q Consensus 4 ~~~~w~~d~~~w~~~~~~~~~~~~~L~~~E~~~~~r~~~~~dr~~~L~~R~l~r~~l~~~~g~~~~~i~~~ 74 (279)
.++++-+|+=....+...|. .|+.+||+.+-++....+.... .=|-.++.++..+.|.++..+.+.
T Consensus 17 M~VR~KLD~cGiKLkL~~W~----~l~~~eRq~Lv~~pc~t~~ei~-~yr~~L~~li~~~~~~~~~~l~~~ 82 (144)
T PF09655_consen 17 MIVRYKLDTCGIKLKLSHWQ----QLSQEERQQLVDLPCDTPEEIQ-NYREFLQELIRTHAGGPAKDLPPD 82 (144)
T ss_pred eeeeeccchhheeeeHHHHh----cCCHHHHHHHHcCCCCCHHHHH-HHHHHHHHHHHHHhCCCcccCCCC
Confidence 35566666665544444443 6999999999999854443333 456677788888999888776554
No 35
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=28.73 E-value=22 Score=36.99 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCCcEEecCCCCCCCCceeEeeccCCCeEEEEecCCccccccccccccccCCChhHHHHHHhccCCHHHHHHHHhcCCc
Q 023684 77 IEGKPYLESDKAGMDFPNFNFNVSHHGDYVAIASEPLCLVGLDIVSCTIPLRETIPEFVQNFSSYFSSFEWDNILNAGTS 156 (279)
Q Consensus 77 ~~GKP~l~~~~~~~~~~~~~fniSHs~~~v~~a~~~~~~VGVDIe~~~~~~~~~~~~~~~~~~~~ft~~E~~~i~~~~~~ 156 (279)
+.|||- ...+..+-+|+|+.++|-++. -.=|||.+++++.. +=+-..+++|.+.+ +.
T Consensus 457 a~GKp~---------~G~I~L~A~~~gn~ivIev~D-DG~Gid~ekI~~KA---------iErGli~~~~a~~l----Sd 513 (716)
T COG0643 457 AAGKPE---------EGTITLSAYHEGNNIVIEVSD-DGAGIDREKIREKA---------IERGLITEEEAETL----SD 513 (716)
T ss_pred HcCCCC---------cceEEEEEEcCCCeEEEEEee-CCCCCCHHHHHHHH---------HHcCCCChHHhccC----CH
Confidence 568874 237999999999999999996 56799999998531 11335555554422 22
Q ss_pred hHHH-HHHHHHHHHHHhhHhhccccCCCCC
Q 023684 157 DEIL-IEFYRYWCLKEAYVKAIGIGVAYGL 185 (279)
Q Consensus 157 ~~~~-~~f~~~WtlKEA~~Ka~G~GL~~~l 185 (279)
++-. --|.-=.+-+|-+.-..|.|.+.|.
T Consensus 514 ~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDV 543 (716)
T COG0643 514 EEILNLIFAPGFSTAEQVTDVSGRGVGMDV 543 (716)
T ss_pred HHHHHHHhcCCCCcchhhhcccCCccCHHH
Confidence 2211 2244446778888888888887663
No 36
>PHA02085 hypothetical protein
Probab=27.78 E-value=92 Score=22.93 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=28.5
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCeeEccCCC
Q 023684 39 KYVKLEDRKRALVSLLLQYALVHQVLGIPFEEITINRTIE 78 (279)
Q Consensus 39 r~~~~~dr~~~L~~R~l~r~~l~~~~g~~~~~i~~~~~~~ 78 (279)
+|+.+.+|..+.+.+-. ...+++++|+++-+.+-..+.+
T Consensus 4 rFKS~e~R~~Fa~~~~~-N~~IAe~mGmdwWecE~~ad~y 42 (87)
T PHA02085 4 RFKSEEHKAMFARRHDC-NQWIADKMGTDWWECEYDADVY 42 (87)
T ss_pred eecCHhHHHHHHhhchh-hHHHHHHhcCCcccccCccccc
Confidence 78888999888777665 5678899999876554444433
No 37
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=24.93 E-value=56 Score=23.46 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=29.3
Q ss_pred cccccccccccCCChhHHHHHHhccCCHHH--HHHHHhcC-CchHHHHHHHHHHHHHHh
Q 023684 117 GLDIVSCTIPLRETIPEFVQNFSSYFSSFE--WDNILNAG-TSDEILIEFYRYWCLKEA 172 (279)
Q Consensus 117 GVDIe~~~~~~~~~~~~~~~~~~~~ft~~E--~~~i~~~~-~~~~~~~~f~~~WtlKEA 172 (279)
||||-+.-..+-. ..+.++-+...+..| .+.+.+.- .+.++.-+-.++||++.+
T Consensus 2 gvdilklvaaqvg--sqwid~y~sla~aterevaafsngytadherayaalqhwtird~ 58 (84)
T cd08778 2 GIDILKLVAAQVG--SQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGP 58 (84)
T ss_pred cchHHHHHHHHHh--hHHHHHHHHHhhhhHHHHHHHcCCCcccHHHHHHHHHhhhccCh
Confidence 7888765432211 244555555555444 44443322 234555667889999854
No 38
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=23.16 E-value=59 Score=21.00 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=11.7
Q ss_pred CCCeEEEEecCCccccc
Q 023684 102 HGDYVAIASEPLCLVGL 118 (279)
Q Consensus 102 s~~~v~~a~~~~~~VGV 118 (279)
-|.+|.||++. .+|-+
T Consensus 4 pG~~V~CAVTg-~~IpL 19 (42)
T PF09866_consen 4 PGSFVRCAVTG-QPIPL 19 (42)
T ss_pred CCCEEEEEeeC-CcccH
Confidence 47899999995 55533
No 39
>COG4058 McrA Methyl coenzyme M reductase, alpha subunit [Coenzyme metabolism]
Probab=22.10 E-value=61 Score=30.82 Aligned_cols=37 Identities=41% Similarity=0.832 Sum_probs=26.6
Q ss_pred eeEccCCCCCcE-EecCCCCCCCCceeEeeccCCCeEEEEecC
Q 023684 71 ITINRTIEGKPY-LESDKAGMDFPNFNFNVSHHGDYVAIASEP 112 (279)
Q Consensus 71 i~~~~~~~GKP~-l~~~~~~~~~~~~~fniSHs~~~v~~a~~~ 112 (279)
+.+ ++..|-|. +.+| .+|+...|+-|+|+|+.++-++
T Consensus 461 ls~-r~deglp~elrgp----nypnyamnvghqgeyagi~qa~ 498 (553)
T COG4058 461 LSI-RGDEGLPLELRGP----NYPNYAMNVGHQGEYAGIAQAA 498 (553)
T ss_pred eee-ecCCCChhhhcCC----CCcchhhccCccccccchhhcc
Confidence 444 34556664 4443 3899999999999999888654
No 40
>PF02772 S-AdoMet_synt_M: S-adenosylmethionine synthetase, central domain; InterPro: IPR022629 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the central domain and is found in association with PF00438 from PFAM and PF02773 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3S82_B 2OBV_A 3RV2_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C 1XRB_A 1MXA_A 1MXB_A ....
Probab=21.91 E-value=1.3e+02 Score=23.94 Aligned_cols=28 Identities=21% Similarity=0.366 Sum_probs=18.0
Q ss_pred CCeeEccCCCCCcEEecCCCCCCCCceeEeeccCCC
Q 023684 69 EEITINRTIEGKPYLESDKAGMDFPNFNFNVSHHGD 104 (279)
Q Consensus 69 ~~i~~~~~~~GKP~l~~~~~~~~~~~~~fniSHs~~ 104 (279)
.++.+.++..|||.=.. .+-+|+-|+.+
T Consensus 55 sQVtveY~~~~~P~ri~--------tivvS~QH~~~ 82 (120)
T PF02772_consen 55 SQVTVEYDENGKPVRID--------TIVVSTQHDED 82 (120)
T ss_dssp EEEEEEEEETTEEEEEE--------EEEEEEEE-TT
T ss_pred eeEEEeeccCCceeeee--------EEEEEecCCCC
Confidence 35788887789996443 46666666543
Done!