Query 023685
Match_columns 278
No_of_seqs 129 out of 246
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 05:53:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13862 BCIP: p21-C-terminal 100.0 3.6E-65 7.9E-70 451.1 20.6 190 52-247 1-194 (194)
2 KOG3034 Isoamyl acetate-hydrol 100.0 2.4E-56 5.2E-61 410.6 20.4 249 5-259 2-275 (308)
3 PF02228 Gag_p19: Major core p 75.1 3 6.6E-05 32.7 2.8 33 63-95 38-74 (92)
4 PF06478 Corona_RPol_N: Corona 37.9 18 0.00038 35.1 1.4 43 59-101 149-192 (355)
5 COG0838 NuoA NADH:ubiquinone o 33.0 28 0.00061 29.2 1.7 19 2-20 34-52 (123)
6 PRK11593 folB bifunctional dih 25.5 2.3E+02 0.005 22.8 5.9 33 67-99 52-89 (119)
7 KOG1762 60s acidic ribosomal p 24.0 27 0.00059 29.0 0.1 21 28-48 87-107 (114)
8 PF06597 Clostridium_P47: Clos 23.0 1.5E+02 0.0033 29.9 5.2 28 52-79 124-153 (456)
9 PF12355 Dscam_C: Down syndrom 22.6 78 0.0017 26.3 2.5 22 14-35 59-80 (124)
10 PF15405 PH_5: Pleckstrin homo 22.3 47 0.001 27.9 1.3 16 203-218 21-36 (135)
11 cd04596 CBS_pair_DRTGG_assoc T 20.2 1.4E+02 0.0031 22.1 3.5 78 84-168 11-92 (108)
No 1
>PF13862 BCIP: p21-C-terminal region-binding protein
Probab=100.00 E-value=3.6e-65 Score=451.08 Aligned_cols=190 Identities=44% Similarity=0.837 Sum_probs=173.0
Q ss_pred ceEEEEEeecCCCCCCHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeCCcccCchhH
Q 023685 52 GVVQADFVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCI 131 (278)
Q Consensus 52 e~V~VDFeffdp~~~DfhgIK~LL~qlf~~~~~dls~LadlIl~Q~~vGtvVK~~~dedddvfg~~SvLNL~~~k~~~~i 131 (278)
|+|||||+||||+|.||||||+||+|||+++.||+++|||+|++|++||||||++|+++++||||+|||||++|++++|+
T Consensus 1 e~V~vdFe~~dp~~~D~hgIk~LL~ql~~~~~~dl~~LadlIi~Q~~vGsvVK~~d~~e~dvyg~~Svlnl~~~k~~~~i 80 (194)
T PF13862_consen 1 EEVNVDFEFFDPNEIDFHGIKNLLQQLFLDAEIDLSELADLIIEQNNVGSVVKQADGDEDDVYGFLSVLNLTQHKDHPCI 80 (194)
T ss_pred CeEEEEEEeeCCChhhHHHHHHHHHHhccccCcCHHHHHHHHHcCCCCceEEEecCCCCCcceEEEEEEEcccccccHHH
Confidence 47999999999999999999999999999999999999999999999999999964466889999999999999999999
Q ss_pred HHHHHHHHHhcc---cchhHHHHHHHhcCCCCceEEEEeccccCCCchhhHHHHHHHHHHHHHhhhcCChhhhcCCcccc
Q 023685 132 KELKEFLLKVCQ---EKDVIRDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDEPTAELRNSFRFK 208 (278)
Q Consensus 132 ~~L~~yLl~~~~---~~~~~~~l~~lL~~~~~~vGLlinER~iN~P~ql~ppL~~~L~eEi~~A~e~~~~ee~~~~f~F~ 208 (278)
++|++||+++|+ .+++.+.|+++|++++++|||||||||||||+||+||||++|++||+||.+++ ++|+|+
T Consensus 81 ~~l~~yl~~k~~~~~~~~~~~~l~~~l~~~~~~vGLlinER~iN~P~ql~ppl~~~L~~ei~~a~~~~------~~~~f~ 154 (194)
T PF13862_consen 81 KQLRKYLLSKCSKSADKEVKKKLEKLLSSSNKNVGLLINERFINIPPQLAPPLYKMLLEEIEWAQEDE------KPFKFT 154 (194)
T ss_pred HHHHHHHHHHhhhccChhHHHHHHHHHhccCCCeEEEEehhhhcCCHHHHHHHHHHHHHHHHHHHhcC------CCCCCe
Confidence 999999999886 56788999999998889999999999999999999999999999999999875 789999
Q ss_pred EEEEEEeEEeecccc-cccCCCCCCCCCccccCchhhhhh
Q 023685 209 CYLLVSKIYKKNNRN-LIRRSGSDGGDGIVYIKPEDENFH 247 (278)
Q Consensus 209 ~yLiisK~y~~~~~~-~KKkk~~~~~~~~~y~~pEDEif~ 247 (278)
|||+|||+|++.++. +|+|++....++++|+|||||+|+
T Consensus 155 ~yL~isk~y~~~~~~~~~~~~~~~~~~~~~~~~~Ede~~~ 194 (194)
T PF13862_consen 155 HYLIISKVYKEKKKKKRKKKKKKKKKDEIIYFNPEDEIFH 194 (194)
T ss_pred EEEEEEEEEeeccccccccccccCCcccceeCChhhhhcC
Confidence 999999999987543 333333345688999999999985
No 2
>KOG3034 consensus Isoamyl acetate-hydrolyzing esterase and related enzymes [General function prediction only]
Probab=100.00 E-value=2.4e-56 Score=410.59 Aligned_cols=249 Identities=31% Similarity=0.522 Sum_probs=214.9
Q ss_pred CchhhhhhcccCCCCCCCCCCCCCCCCCcccCCCCCCCCCCc------CCCCCceEEEEEeecCCCCCCHHHHHHHHHHh
Q 023685 5 PTRDKRRTYKSKDQKGFPLSSKDKGIPKHTLEGKSDLSGSSE------EEGSEGVVQADFVFFDPKPDDFHGVKILLQTY 78 (278)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ds~d------de~~~e~V~VDFeffdp~~~DfhgIK~LL~ql 78 (278)
++|+|||+..|+.++++-++.+++-.++.+++.+.+++|++| ++.++++||+|||||+|+|.||||||+||+|+
T Consensus 2 ~~~~~~~~~~s~~k~~~l~~~~r~~~e~~~v~~~~edddD~d~~~eeek~~e~e~vnidFE~~~p~d~D~~giknLL~Ql 81 (308)
T KOG3034|consen 2 ASRSKRRAVESKYKQLPLPPFQRDEEEEEDVEDESEDDDDEDKENEEEKEVEDEEVNIDFEAYSPSDVDADGIKNLLQQL 81 (308)
T ss_pred CCcccchhhhhcCCCCCCcchhccccccccccccccCcccccccchhhhccccceEeccccccCCCCcchHHHHHHHHHH
Confidence 578899999999999999999999999888887766643322 12246799999999999999999999999999
Q ss_pred hccCCCChhhHHHHHHcCCCcceEEEecCCC-------CCCceEEEEeeeCCcccCchhHHHHHHHHHHhcc---cchhH
Q 023685 79 LDDTQWDLSGFVDLILAQTTVGTVVKMEGDD-------DDTPFSIVTALNLGRYKDHKCIKELKEFLLKVCQ---EKDVI 148 (278)
Q Consensus 79 f~~~~~dls~LadlIl~Q~~vGtvVK~~~de-------dddvfg~~SvLNL~~~k~~~~i~~L~~yLl~~~~---~~~~~ 148 (278)
|..++||+++|||+||+|+++|+|||+++++ .+|+||++|+||++..++.+||++|.+|++++|. ++.+.
T Consensus 82 fl~~~Vnla~laDlii~q~~~gsvikq~~~~e~~~d~m~~D~~~~~s~lnl~~~~~~~~ikqL~~yvL~r~~k~~~k~v~ 161 (308)
T KOG3034|consen 82 FLRAHVNLAALADLIIAQNHIGSVIKQDDDSETENDDMDEDPFGFLSFLNLTARKDTKCIKQLQEYVLRRCKKNAEKEVV 161 (308)
T ss_pred hccccccHHHhHHHHhhcccccceeEecccccccccccccCCceEEEEeehhhhccchHHHHHHHHHHHHHhhcCCHHHH
Confidence 9999999999999999999999999999865 2578999999999999999999999999999987 56799
Q ss_pred HHHHHHhcCCCCceEEEEeccccCCCchhhHHHHHHHHHHHHHhhhcCChhhhcCCccccEEEEEEeEEeecccc-----
Q 023685 149 RDLRLLMGEQAHDVGLLVSQRVVNLPPQLLPPLHDALFDEVSWATEDEPTAELRNSFRFKCYLLVSKIYKKNNRN----- 223 (278)
Q Consensus 149 ~~l~~lL~~~~~~vGLlinER~iN~P~ql~ppL~~~L~eEi~~A~e~~~~ee~~~~f~F~~yLiisK~y~~~~~~----- 223 (278)
++|+.+|.+++++|||||||||||||+||+||||++|++||+||...+ ++|.|.||+++.+.|....+.
T Consensus 162 ~~lk~ll~s~~k~vgLlvsERliN~P~qv~pPly~~l~eEla~A~~~~------kp~~f~~~lll~~~y~~eakk~~~s~ 235 (308)
T KOG3034|consen 162 EQLKLLLDSGTKPVGLLVSERLINMPPQVVPPLYQSLQEELAGAHREN------KPYDFCYFLLLVKTYFVEAKKGKSSE 235 (308)
T ss_pred HHHHHHHhcCCCceeEEeehhhhcCCchhhhHHHHHHHHHHHHHhccC------CccceEEEEEEEEEeeehhccCCCcc
Confidence 999999999999999999999999999999999999999999998654 779999999999999875321
Q ss_pred --cccCCC--CCCCCCccccCchhhhhhhcCeEEEEEecc
Q 023685 224 --LIRRSG--SDGGDGIVYIKPEDENFHKLSLWSFSFPMH 259 (278)
Q Consensus 224 --~KKkk~--~~~~~~~~y~~pEDEif~~~A~~~f~y~~~ 259 (278)
.||++. .-..+++.|+|+||++|.-.+...+.|...
T Consensus 236 ~~~kk~~~a~~~~~aE~~ff~eed~~~e~~~~i~~~~~~~ 275 (308)
T KOG3034|consen 236 KPSKKKKAALLVANAEVEFFYEEDRFFELKSLIEEDTDAG 275 (308)
T ss_pred cccccHHHHhhhccchhhccchHhhhhhhhhccccccccC
Confidence 112221 235678999999999666666677777666
No 3
>PF02228 Gag_p19: Major core protein p19; InterPro: IPR003139 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from delta-retroviruses such as Human T-lymphotropic virus 1 and Human T-cell leukemia virus 2 (HTLV-2), both members of the human oncovirus subclass of retroviruses [, ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1JVR_A.
Probab=75.10 E-value=3 Score=32.66 Aligned_cols=33 Identities=27% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHhhcc----CCCChhhHHHHHHc
Q 023685 63 PKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILA 95 (278)
Q Consensus 63 p~~~DfhgIK~LL~qlf~~----~~~dls~LadlIl~ 95 (278)
|++-|||-+|++|.-.+.. +.||.|-||.||-.
T Consensus 38 PS~~DF~qLr~flk~alkTpvwl~pi~yslla~lipk 74 (92)
T PF02228_consen 38 PSSFDFHQLRNFLKLALKTPVWLNPINYSLLASLIPK 74 (92)
T ss_dssp -STTTHHHHHHHHHHHHT-TTSTTTT-TTTHHHHS-S
T ss_pred CCcccHHHHHHHHHHHHcCCeeeccccHHHHHHHccC
Confidence 5566999999999876643 78999999998754
No 4
>PF06478 Corona_RPol_N: Coronavirus RPol N-terminus; InterPro: IPR009469 This domain represents the N-terminal region of the coronavirus RNA-directed RNA Polymerase.; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0005524 ATP binding, 0006351 transcription, DNA-dependent
Probab=37.94 E-value=18 Score=35.06 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=39.5
Q ss_pred eecCCCCC-CHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcce
Q 023685 59 VFFDPKPD-DFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGT 101 (278)
Q Consensus 59 effdp~~~-DfhgIK~LL~qlf~~~~~dls~LadlIl~Q~~vGt 101 (278)
.||||-|+ |+|.+=+-|-..+..+.++.-.++|++.++..||-
T Consensus 149 ~WyDpVEN~di~~vy~kLG~iv~~a~L~~v~f~d~mv~~G~VGV 192 (355)
T PF06478_consen 149 DWYDPVENPDIHRVYAKLGPIVNRAMLKAVKFCDAMVEKGLVGV 192 (355)
T ss_pred cCcCCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeEE
Confidence 48999998 99999999999999999999999999999988883
No 5
>COG0838 NuoA NADH:ubiquinone oxidoreductase subunit 3 (chain A) [Energy production and conversion]
Probab=33.02 E-value=28 Score=29.21 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=16.7
Q ss_pred CCCCchhhhhhcccCCCCC
Q 023685 2 PRGPTRDKRRTYKSKDQKG 20 (278)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~ 20 (278)
||.|+|.|.++|++|.+.-
T Consensus 34 p~~~~~~K~~~YE~G~~p~ 52 (123)
T COG0838 34 PRRPNPEKLSPYECGNPPF 52 (123)
T ss_pred CCCCCccccCccccCCCCC
Confidence 8999999999999997643
No 6
>PRK11593 folB bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase; Provisional
Probab=25.50 E-value=2.3e+02 Score=22.75 Aligned_cols=33 Identities=12% Similarity=0.316 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHhhccCCCCh-----hhHHHHHHcCCCc
Q 023685 67 DFHGVKILLQTYLDDTQWDL-----SGFVDLILAQTTV 99 (278)
Q Consensus 67 DfhgIK~LL~qlf~~~~~dl-----s~LadlIl~Q~~v 99 (278)
||..|-..+..+.....|+| ..+|+.|+++-.+
T Consensus 52 dY~~v~~~I~~~~~~~~~~LlE~la~~ia~~i~~~~~~ 89 (119)
T PRK11593 52 SYADIAETVISHVEGARFALVERVAEEVAELLLARFNS 89 (119)
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHhhCCC
Confidence 89999999999998888885 5577888877543
No 7
>KOG1762 consensus 60s acidic ribosomal protein P1 [Translation, ribosomal structure and biogenesis]
Probab=24.01 E-value=27 Score=29.01 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=16.0
Q ss_pred CCCCCcccCCCCCCCCCCcCC
Q 023685 28 KGIPKHTLEGKSDLSGSSEEE 48 (278)
Q Consensus 28 ~~~~~~~~~~~~~~~ds~dde 48 (278)
...+|.+.|.|-|.+++|||+
T Consensus 87 A~~~Ekk~eak~EeseesddD 107 (114)
T KOG1762|consen 87 AAAEEKKEEAKKEESEESDDD 107 (114)
T ss_pred ccchHHHHHhhhhhhcccccc
Confidence 445677778888888888887
No 8
>PF06597 Clostridium_P47: Clostridium P-47 protein; InterPro: IPR010567 This family consists of several P-47 proteins from various Clostridium species [] as well as related sequences from other bacteria. The function of this family is unknown.
Probab=23.00 E-value=1.5e+02 Score=29.94 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=16.4
Q ss_pred ceEEE--EEeecCCCCCCHHHHHHHHHHhh
Q 023685 52 GVVQA--DFVFFDPKPDDFHGVKILLQTYL 79 (278)
Q Consensus 52 e~V~V--DFeffdp~~~DfhgIK~LL~qlf 79 (278)
-.|.+ .+.|-+|...+-..++.+|.++|
T Consensus 124 ~vi~i~~~~~~~~~~~~~~~~~~~~~~~ll 153 (456)
T PF06597_consen 124 AVIIILEGINFTDPDGDNDSIAKALFSALL 153 (456)
T ss_pred ceEEeeccccccCCccchhHHHHHHHHHHH
Confidence 35555 56777777755555555554444
No 9
>PF12355 Dscam_C: Down syndrome cell adhesion molecule C terminal ; InterPro: IPR021012 This entry is specific to the insecta, predominantly Drosophila spp. This entry is found in association with PF00047 from PFAM, PF07679 from PFAM and PF00041 from PFAM. The Down syndrome cell adhesion molecule (Dscam) belongs to a family of cell membrane molecules involved in the differentiation of the nervous system. This is the C-terminal cytoplasmic tail region of Dscam. In Drosophila melanogaster (Fruit fly) the gene has at least 59 different transcripts. Dscam may play a role in the nervous and immune systems [].
Probab=22.58 E-value=78 Score=26.33 Aligned_cols=22 Identities=5% Similarity=0.215 Sum_probs=15.3
Q ss_pred ccCCCCCCCCCCCCCCCCCccc
Q 023685 14 KSKDQKGFPLSSKDKGIPKHTL 35 (278)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~ 35 (278)
.+|+|.||+|+.+..+..+-+.
T Consensus 59 ~~gSPePPpPPPRn~D~~nsSf 80 (124)
T PF12355_consen 59 GNGSPEPPPPPPRNHDVSNSSF 80 (124)
T ss_pred CCCCCCCCCcCCCCCCCCCccc
Confidence 3688999888877767654333
No 10
>PF15405 PH_5: Pleckstrin homology domain; PDB: 2Z0Q_A.
Probab=22.32 E-value=47 Score=27.89 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=13.1
Q ss_pred CCccccEEEEEEeEEe
Q 023685 203 NSFRFKCYLLVSKIYK 218 (278)
Q Consensus 203 ~~f~F~~yLiisK~y~ 218 (278)
..|=|||||+|+|.-+
T Consensus 21 ~~~LFDh~Lll~K~k~ 36 (135)
T PF15405_consen 21 HVYLFDHYLLLTKPKK 36 (135)
T ss_dssp EEEEESSEEEEEEEEE
T ss_pred EEEeeccEEEEEEEEe
Confidence 4578999999999843
No 11
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=20.25 E-value=1.4e+02 Score=22.05 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=39.6
Q ss_pred CChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeCCcccCchhHHHHHHHHHH---hcc-cchhHHHHHHHhcCCC
Q 023685 84 WDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNLGRYKDHKCIKELKEFLLK---VCQ-EKDVIRDLRLLMGEQA 159 (278)
Q Consensus 84 ~dls~LadlIl~Q~~vGtvVK~~~dedddvfg~~SvLNL~~~k~~~~i~~L~~yLl~---~~~-~~~~~~~l~~lL~~~~ 159 (278)
..++++.+.+.. ...+.+.-+++ ++.+.|+++.-+|....... .+.+++.. .++ +.++.+.++.+... .
T Consensus 11 ~~~~~a~~~~~~-~~~~~~~V~d~--~~~~~G~v~~~~l~~~~~~~---~v~~~~~~~~~~v~~~~~l~~~~~~~~~~-~ 83 (108)
T cd04596 11 DTVKDWHELNKE-TGHSRFPVVDE--KNKVVGIVTSKDVAGKDPDT---TIEKVMTKNPITVNPKTSVASVAHMMIWE-G 83 (108)
T ss_pred CCHHHHHHHHHH-cCCCceeEECC--CCeEEEEecHHHHhcccccc---cHHHHhcCCCeEECCCCCHHHHHHHHHHc-C
Confidence 345566666644 44555554543 35699999976654322221 23344432 122 23455555555543 3
Q ss_pred CceEEEEec
Q 023685 160 HDVGLLVSQ 168 (278)
Q Consensus 160 ~~vGLlinE 168 (278)
.....++++
T Consensus 84 ~~~~~Vv~~ 92 (108)
T cd04596 84 IEMLPVVDD 92 (108)
T ss_pred CCeeeEEcC
Confidence 345566654
Done!