Query 023685
Match_columns 278
No_of_seqs 129 out of 246
Neff 5.4
Searched_HMMs 13730
Date Mon Mar 25 11:03:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023685.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/023685hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jvra_ a.61.1.2 (A:) HTLV-II 69.2 1.6 0.00012 33.8 3.2 33 63-95 39-75 (137)
2 d1s3za_ d.108.1.1 (A:) Aminogl 38.8 35 0.0025 23.8 6.2 57 59-119 4-62 (147)
3 d1yvoa1 d.108.1.1 (A:4-172) Hy 28.9 28 0.002 25.3 4.3 61 61-123 3-72 (169)
4 d1yr0a1 d.108.1.1 (A:4-166) Ph 26.4 47 0.0034 23.6 5.2 60 61-123 5-73 (163)
5 d2ozga2 d.108.1.10 (A:8-290) P 26.3 84 0.0061 24.9 7.3 79 58-142 2-100 (283)
6 d2rnrb1 b.55.1.9 (B:1-108) TFI 21.3 21 0.0015 26.2 2.0 27 55-81 74-102 (108)
7 d1mk4a_ d.108.1.1 (A:) Hypothe 19.5 50 0.0037 23.6 4.0 22 61-82 5-26 (157)
8 d1vhsa_ d.108.1.1 (A:) Putativ 19.5 1.4E+02 0.01 20.9 9.6 63 59-122 3-72 (165)
9 d1iyka2 d.108.1.2 (A:225-451) 18.3 1.2E+02 0.009 24.6 6.6 61 60-122 43-113 (227)
10 d2fe7a1 d.108.1.1 (A:3-158) Pr 17.3 1.6E+02 0.012 20.6 7.8 58 61-120 4-67 (156)
No 1
>d1jvra_ a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell leukemia virus type 2 [TaxId: 11909]}
Probab=69.22 E-value=1.6 Score=33.77 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHhhcc----CCCChhhHHHHHHc
Q 023685 63 PKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILA 95 (278)
Q Consensus 63 p~~~DfhgIK~LL~qlf~~----~~~dls~LadlIl~ 95 (278)
|++-|||-+|++|.-.+.. +.||.|-||.+|=.
T Consensus 39 PS~~DF~qLr~flklalkTpvwl~Pi~ySlla~liPk 75 (137)
T d1jvra_ 39 PSDFDFQQLRRFLKLALKTPIWLNPIDYSLLASLIPK 75 (137)
T ss_dssp CSTTTHHHHHHHHHHHHTCTTSTTTTCTTTHHHHSCS
T ss_pred CCcccHHHHHHHHHHHHhCcccccccccchhhccCCC
Confidence 5566999999999876643 78999999988643
No 2
>d1s3za_ d.108.1.1 (A:) Aminoglycoside N-acetyltransferase AAC(6')-IY {Salmonella enteritidis [TaxId: 149539]}
Probab=38.76 E-value=35 Score=23.82 Aligned_cols=57 Identities=9% Similarity=0.085 Sum_probs=36.4
Q ss_pred eecCCCCCCHHHHHHHHHHhhccC--CCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEe
Q 023685 59 VFFDPKPDDFHGVKILLQTYLDDT--QWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTA 119 (278)
Q Consensus 59 effdp~~~DfhgIK~LL~qlf~~~--~~dls~LadlIl~Q~~vGtvVK~~~dedddvfg~~Sv 119 (278)
+....++.|..++..|.++++... ......+.+.+... ....+|..++ +.+.|++++
T Consensus 4 ~Ir~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~va~~~---~~~vG~~~~ 62 (147)
T d1s3za_ 4 DIRQMNKTHLEHWRGLRKQLWPGHPDDAHLADGEEILQAD-HLASFIAMAD---GVAIGFADA 62 (147)
T ss_dssp EEEECCGGGHHHHHHHHHHHSTTSCHHHHHHHHHHHHHCS-SEEEEEEEET---TEEEEEEEE
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHhhCC-CcEEEEEEEC---CEEEEEEEE
Confidence 346678889999999999998653 23445566655543 4344444432 457777665
No 3
>d1yvoa1 d.108.1.1 (A:4-172) Hypothetical protein PA4866 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=28.91 E-value=28 Score=25.31 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=38.3
Q ss_pred cCCCCCCHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCcc--eEEEecCCCCCCceEEEEeeeCC
Q 023685 61 FDPKPDDFHGVKILLQTYL-------DDTQWDLSGFVDLILAQTTVG--TVVKMEGDDDDTPFSIVTALNLG 123 (278)
Q Consensus 61 fdp~~~DfhgIK~LL~qlf-------~~~~~dls~LadlIl~Q~~vG--tvVK~~~dedddvfg~~SvLNL~ 123 (278)
+...+.|..+|..+++++. +....+..++...+..+..-+ -+|-.+ .++.+.|++++-...
T Consensus 3 R~a~~~D~~~i~~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~vG~~~~~~~~ 72 (169)
T d1yvoa1 3 RDAGVADLPGILAIYNDAVGNTTAIWNETPVDLANRQAWFDTRARQGYPILVASD--AAGEVLGYASYGDWR 72 (169)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSCCSCCCHHHHHHHHHHHHHHTCCEEEEEC--TTCCEEEEEEEEESS
T ss_pred ccCcHHHHHHHHHHHHHHHhhcceecccCCCCHHHHHHHHHhhhccCCceEEEEe--cCCCEEEeecccccc
Confidence 3456789999999987753 334566777777665543322 333333 345699998776544
No 4
>d1yr0a1 d.108.1.1 (A:4-166) Phosphinothricin acetyltransferase {Agrobacterium tumefaciens [TaxId: 358]}
Probab=26.36 E-value=47 Score=23.65 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=37.5
Q ss_pred cCCCCCCHHHHHHHHHHhh-------ccCCCChhhHHHHHHcCCCc--ceEEEecCCCCCCceEEEEeeeCC
Q 023685 61 FDPKPDDFHGVKILLQTYL-------DDTQWDLSGFVDLILAQTTV--GTVVKMEGDDDDTPFSIVTALNLG 123 (278)
Q Consensus 61 fdp~~~DfhgIK~LL~qlf-------~~~~~dls~LadlIl~Q~~v--GtvVK~~~dedddvfg~~SvLNL~ 123 (278)
+...++|..+|..++.++. +...++..+..+.+.....- ..+|-.. ++.+.|++++....
T Consensus 5 R~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~---~~~ivG~~~~~~~~ 73 (163)
T d1yr0a1 5 RDATVDDLSGIMEIYNDAVVNTTAIWNEVVVDLENRKDWFAARTSRGFPVIVAIL---DGKVAGYASYGDWR 73 (163)
T ss_dssp EECCGGGHHHHHHHHHHHHHHCSSSSSCCCCCHHHHHHHHHHHHHHTCCEEEEEE---TTEEEEEEEEEESS
T ss_pred EeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhhccCCCcEEEEEE---CCeEEEeecceeec
Confidence 4567789999999987753 23456667766666554322 2333322 34689988776654
No 5
>d2ozga2 d.108.1.10 (A:8-290) Putative acetyltransferase Ava4977 {Anabaena variabilis [TaxId: 1172]}
Probab=26.34 E-value=84 Score=24.91 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=47.8
Q ss_pred EeecCCCCCCHHHHHHHHHHhhccCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeee----------------
Q 023685 58 FVFFDPKPDDFHGVKILLQTYLDDTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALN---------------- 121 (278)
Q Consensus 58 Feffdp~~~DfhgIK~LL~qlf~~~~~dls~LadlIl~Q~~vGtvVK~~~dedddvfg~~SvLN---------------- 121 (278)
|.+...+++|...|+.|+.+.|.....+....-+-+-.++. -|+..+ +.+.|.++++.
T Consensus 2 ~~~~ka~~~d~~~l~~l~~~~F~~~~~~~~~~~~~~~~~~~--~v~~~~----~~ivg~~~~~~~~~~~~g~~~~~~~i~ 75 (283)
T d2ozga2 2 FKYTKASQENIQQLGNILEQCFVMSFGDSEIYVKGIGLENF--RVIYRE----QKVAGGLAILPMGQWWGGQRVPMAGIA 75 (283)
T ss_dssp EEEEECCTTTHHHHHHHHHHHTTCCTTHHHHHHHHHCGGGE--EEEEET----TEEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEECCHHHHHHHHHHHHHHcCCCcCcHHHHHHHhcCCCE--EEEEEC----CEEEEEEEEEEeeeeECCeeeeEeeEE
Confidence 67778899999999999999997655444444443333322 233322 23444444443
Q ss_pred ----CCcccCchhHHHHHHHHHHhc
Q 023685 122 ----LGRYKDHKCIKELKEFLLKVC 142 (278)
Q Consensus 122 ----L~~~k~~~~i~~L~~yLl~~~ 142 (278)
..+|+.......|.+.+++.+
T Consensus 76 ~v~v~p~~rg~G~~~~L~~~~~~~~ 100 (283)
T d2ozga2 76 AVGIAPEYRGDGAAIALIQHTLQEI 100 (283)
T ss_dssp EEEECGGGTTSSHHHHHHHHHHHHH
T ss_pred EEEECcccccCChHHHHHHHHHHHH
Confidence 334666666777777777543
No 6
>d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.31 E-value=21 Score=26.21 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=21.9
Q ss_pred EEEEeecCCCCC--CHHHHHHHHHHhhcc
Q 023685 55 QADFVFFDPKPD--DFHGVKILLQTYLDD 81 (278)
Q Consensus 55 ~VDFeffdp~~~--DfhgIK~LL~qlf~~ 81 (278)
.--|.|-++..- |.+.||.+|+|++..
T Consensus 74 s~~F~Ftn~~~~~~~Rd~iK~~Lq~~i~~ 102 (108)
T d2rnrb1 74 TTNFHFSNESTAVKERDAVKDLLQQLLPK 102 (108)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECChHHHHHHHHHHHHHHHHHHHH
Confidence 368899887653 889999999999853
No 7
>d1mk4a_ d.108.1.1 (A:) Hypothetical protein YqiY {Bacillus subtilis [TaxId: 1423]}
Probab=19.55 E-value=50 Score=23.64 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=18.1
Q ss_pred cCCCCCCHHHHHHHHHHhhccC
Q 023685 61 FDPKPDDFHGVKILLQTYLDDT 82 (278)
Q Consensus 61 fdp~~~DfhgIK~LL~qlf~~~ 82 (278)
+...++|++.|..|+++++...
T Consensus 5 R~~~~~D~~~i~~l~~~~~~~~ 26 (157)
T d1mk4a_ 5 RTITSSDYEMVTSVLNEWWGGR 26 (157)
T ss_dssp EECCGGGHHHHHHHTTTSSTTC
T ss_pred EeCCHHHHHHHHHHHHHHhcCC
Confidence 5567789999999999988653
No 8
>d1vhsa_ d.108.1.1 (A:) Putative phosphinothricin acetyltransferase YwnH {Bacillus subtilis [TaxId: 1423]}
Probab=19.54 E-value=1.4e+02 Score=20.93 Aligned_cols=63 Identities=6% Similarity=0.057 Sum_probs=42.2
Q ss_pred eecCCCCCCHHHHHHHHHHhhc-------cCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEeeeC
Q 023685 59 VFFDPKPDDFHGVKILLQTYLD-------DTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTALNL 122 (278)
Q Consensus 59 effdp~~~DfhgIK~LL~qlf~-------~~~~dls~LadlIl~Q~~vGtvVK~~~dedddvfg~~SvLNL 122 (278)
..+...++|...|..|..++.. ....+..++.+.+.....-+.+.-... +++.+.|++++-+.
T Consensus 3 ~iR~a~~~D~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~ivG~~~~~~~ 72 (165)
T d1vhsa_ 3 TLRLAEHRDLEAVVAIYNSTIASRMVTADTEPVTPEDRMEWFSGHTESRPLYVAED-ENGNVAAWISFETF 72 (165)
T ss_dssp EEEECCGGGHHHHHHHHHHHHTTTSSCSCSSCCCGGGGHHHHHTCCSSSCEEEEEC-TTSCEEEEEEEEES
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhcccccccCCCCHHHHHHHHHhccccCCeEEEEe-cCCceEeeeeeeec
Confidence 3456678899999999877542 245667778888777665554444433 34568898876554
No 9
>d1iyka2 d.108.1.2 (A:225-451) N-myristoyl transferase, NMT {Yeast (Candida albicans) [TaxId: 5476]}
Probab=18.31 E-value=1.2e+02 Score=24.59 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=44.1
Q ss_pred ecCCCCCCHHHHHHHHHHhhcc----CCCChhhHHHHHHcCC------CcceEEEecCCCCCCceEEEEeeeC
Q 023685 60 FFDPKPDDFHGVKILLQTYLDD----TQWDLSGFVDLILAQT------TVGTVVKMEGDDDDTPFSIVTALNL 122 (278)
Q Consensus 60 ffdp~~~DfhgIK~LL~qlf~~----~~~dls~LadlIl~Q~------~vGtvVK~~~dedddvfg~~SvLNL 122 (278)
++.+.+.|...+..||+.|+.. ..|+-.+++-.++.+. -|-|=|..+ +++.+-.|+|.-+|
T Consensus 43 lR~M~~kDv~~V~~LL~~yl~~f~l~~~F~~eev~Hwflp~~~~~~~~Vi~sYVve~--~~g~ItDF~SFY~L 113 (227)
T d1iyka2 43 LRPMTGKDVSTVLSLLYKYQERFDIVQLFTEEEFKHWMLGHDENSDSNVVKSYVVED--ENGIITDYFSYYLL 113 (227)
T ss_dssp EEECCGGGHHHHHHHHHHHHTTSSEEEECCHHHHHHHHHCSCSSSCCSSEEEEEEEC--TTSCEEEEEEEEEC
T ss_pred cccCchhhHHHHHHHHHHHHHcCcceEecCHHHHHHhhcCccccCCCCeEEEEEEEC--CCCcEeEEEEEeec
Confidence 6677888999999999999854 6799999999999874 344555433 33456666655444
No 10
>d2fe7a1 d.108.1.1 (A:3-158) Probable N-acetyltransferase PA0478 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=17.33 E-value=1.6e+02 Score=20.61 Aligned_cols=58 Identities=12% Similarity=0.186 Sum_probs=37.3
Q ss_pred cCCCCCCHHHHHHHHHHhhc------cCCCChhhHHHHHHcCCCcceEEEecCCCCCCceEEEEee
Q 023685 61 FDPKPDDFHGVKILLQTYLD------DTQWDLSGFVDLILAQTTVGTVVKMEGDDDDTPFSIVTAL 120 (278)
Q Consensus 61 fdp~~~DfhgIK~LL~qlf~------~~~~dls~LadlIl~Q~~vGtvVK~~~dedddvfg~~SvL 120 (278)
+...+.|...|-.|++++.. ...++...+...+..++.-..++-... ++.+.|++++.
T Consensus 4 R~a~~~D~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~va~~--~~~ivG~~~~~ 67 (156)
T d2fe7a1 4 RPAVPADAEQILAFIIELADYERARHEVVTDVEGIRRSLFAEGSPTRALMCLS--EGRPIGYAVFF 67 (156)
T ss_dssp EECCGGGHHHHHHHHHHHHHHTTCGGGCCCCHHHHHHHHTSTTCSEEEEEEEE--TTEEEEEEEEE
T ss_pred EECCHHHHHHHHHHHHHHHHHhcCcccccCCHHHHHHHHhccCCCceEEEEee--CCEEEEEEeEe
Confidence 44567899999999887632 234556677777777766555444442 24588876543
Done!