Query 023686
Match_columns 278
No_of_seqs 130 out of 1903
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:53:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023686.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023686hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02113 putative hydrolase; P 100.0 1.5E-41 3.2E-46 287.2 24.8 246 1-276 6-252 (252)
2 TIGR02108 PQQ_syn_pqqB coenzym 100.0 2.6E-39 5.6E-44 277.7 20.7 252 1-276 5-302 (302)
3 PRK05184 pyrroloquinoline quin 100.0 5.4E-39 1.2E-43 276.8 22.7 254 1-276 6-302 (302)
4 PRK11244 phnP carbon-phosphoru 100.0 2.7E-37 5.9E-42 260.7 23.0 235 1-276 6-250 (250)
5 TIGR03307 PhnP phosphonate met 100.0 3.4E-34 7.4E-39 240.1 21.9 230 6-274 1-238 (238)
6 TIGR02649 true_RNase_BN ribonu 100.0 2.1E-31 4.5E-36 230.8 22.6 231 33-276 11-303 (303)
7 TIGR02651 RNase_Z ribonuclease 100.0 6E-31 1.3E-35 227.9 21.3 224 34-276 13-299 (299)
8 PRK00055 ribonuclease Z; Revie 100.0 1.5E-27 3.3E-32 203.5 17.5 232 34-277 15-267 (270)
9 COG1234 ElaC Metal-dependent h 99.9 5.8E-27 1.2E-31 200.6 15.2 235 33-277 14-292 (292)
10 PRK02126 ribonuclease Z; Provi 99.9 1.1E-24 2.3E-29 189.7 21.0 202 37-248 14-320 (334)
11 PRK00685 metal-dependent hydro 99.9 5.9E-24 1.3E-28 177.1 18.4 207 37-276 6-228 (228)
12 PF12706 Lactamase_B_2: Beta-l 99.9 5.6E-23 1.2E-27 166.7 14.9 176 53-241 1-194 (194)
13 COG1235 PhnP Metal-dependent h 99.9 6.7E-22 1.5E-26 168.4 16.9 218 1-249 9-243 (269)
14 TIGR02650 RNase_Z_T_toga ribon 99.9 8E-22 1.7E-26 164.5 16.0 199 52-262 18-265 (277)
15 PRK04286 hypothetical protein; 99.9 1.7E-21 3.7E-26 167.8 14.0 231 36-272 12-280 (298)
16 TIGR00649 MG423 conserved hypo 99.9 1.7E-20 3.7E-25 169.6 17.6 213 32-267 7-249 (422)
17 PRK11709 putative L-ascorbate 99.8 5.4E-19 1.2E-23 154.7 19.2 203 37-258 43-300 (355)
18 KOG2121 Predicted metal-depend 99.8 3.8E-21 8.2E-26 174.9 3.6 232 33-276 455-715 (746)
19 TIGR03675 arCOG00543 arCOG0054 99.8 2.5E-18 5.4E-23 160.8 18.7 233 32-274 181-443 (630)
20 smart00849 Lactamase_B Metallo 99.8 8.9E-18 1.9E-22 134.5 14.5 142 36-192 3-148 (183)
21 COG0595 mRNA degradation ribon 99.7 5.4E-17 1.2E-21 148.2 15.6 214 31-268 14-258 (555)
22 COG1782 Predicted metal-depend 99.7 6.7E-17 1.4E-21 141.6 14.8 235 32-276 187-451 (637)
23 PRK11921 metallo-beta-lactamas 99.7 1.2E-16 2.7E-21 143.2 12.0 126 38-187 32-163 (394)
24 COG1236 YSH1 Predicted exonucl 99.7 9.9E-16 2.1E-20 137.9 17.6 180 31-224 6-201 (427)
25 COG2333 ComEC Predicted hydrol 99.7 3E-15 6.4E-20 127.0 16.2 210 37-276 52-274 (293)
26 KOG1136 Predicted cleavage and 99.7 1.8E-15 3.9E-20 126.6 13.2 192 32-230 10-227 (501)
27 PRK05452 anaerobic nitric oxid 99.7 8.7E-16 1.9E-20 140.3 11.8 127 37-187 33-167 (479)
28 PRK11539 ComEC family competen 99.6 4.2E-15 9.2E-20 143.0 16.3 196 38-276 510-724 (755)
29 TIGR00361 ComEC_Rec2 DNA inter 99.6 6.2E-15 1.3E-19 140.2 17.2 193 37-268 448-658 (662)
30 TIGR03413 GSH_gloB hydroxyacyl 99.6 6.3E-15 1.4E-19 124.0 15.3 119 37-189 8-129 (248)
31 COG1237 Metal-dependent hydrol 99.6 3.8E-14 8.3E-19 115.8 15.8 79 33-119 16-96 (259)
32 COG2220 Predicted Zn-dependent 99.6 5E-14 1.1E-18 119.4 17.2 217 37-276 12-250 (258)
33 COG0426 FpaA Uncharacterized f 99.6 6.9E-15 1.5E-19 127.7 11.1 128 37-188 34-167 (388)
34 PRK10241 hydroxyacylglutathion 99.6 4.1E-14 9E-19 119.2 14.6 120 37-189 10-130 (251)
35 PLN02469 hydroxyacylglutathion 99.6 1.5E-14 3.2E-19 122.1 10.8 121 37-189 10-138 (258)
36 PF13483 Lactamase_B_3: Beta-l 99.6 1.6E-14 3.4E-19 114.1 10.1 148 37-240 5-163 (163)
37 PF02112 PDEase_II: cAMP phosp 99.6 2.7E-13 5.8E-18 117.1 18.2 239 31-271 9-335 (335)
38 PLN02962 hydroxyacylglutathion 99.6 7.7E-14 1.7E-18 116.9 14.3 124 37-189 21-153 (251)
39 PF00753 Lactamase_B: Metallo- 99.6 4E-15 8.7E-20 119.4 6.1 63 36-102 3-67 (194)
40 PLN02398 hydroxyacylglutathion 99.5 1.1E-13 2.3E-18 119.8 14.0 122 37-189 85-209 (329)
41 COG0491 GloB Zn-dependent hydr 99.4 5E-12 1.1E-16 106.0 12.3 145 35-190 21-171 (252)
42 KOG1137 mRNA cleavage and poly 99.4 4.8E-13 1E-17 118.6 5.5 180 32-218 20-217 (668)
43 KOG0813 Glyoxylase [General fu 99.2 1.1E-10 2.4E-15 96.7 10.8 122 36-187 10-140 (265)
44 COG2248 Predicted hydrolase (m 99.2 1.1E-10 2.3E-15 94.7 9.9 223 37-269 13-276 (304)
45 COG5212 PDE1 Low-affinity cAMP 99.1 1.8E-09 4E-14 88.5 12.5 197 77-275 111-355 (356)
46 KOG1135 mRNA cleavage and poly 99.0 4E-09 8.6E-14 96.3 11.6 165 37-210 13-200 (764)
47 KOG1361 Predicted hydrolase in 98.9 2.5E-08 5.3E-13 89.2 11.8 190 52-268 89-292 (481)
48 KOG0814 Glyoxylase [General fu 98.9 5.7E-09 1.2E-13 80.2 6.7 121 36-187 18-141 (237)
49 KOG3798 Predicted Zn-dependent 98.8 2.5E-07 5.3E-12 75.4 13.1 211 38-272 87-337 (343)
50 PF14597 Lactamase_B_5: Metall 98.7 5E-07 1.1E-11 70.2 11.6 168 40-258 24-196 (199)
51 COG2015 Alkyl sulfatase and re 98.0 2.2E-05 4.8E-10 69.8 7.0 70 50-119 133-205 (655)
52 PF13691 Lactamase_B_4: tRNase 97.4 0.00053 1.1E-08 44.4 5.5 49 40-94 13-63 (63)
53 KOG4736 Uncharacterized conser 95.7 0.049 1.1E-06 46.0 7.4 44 50-98 102-145 (302)
54 PF07521 RMMBL: RNA-metabolisi 93.5 0.1 2.3E-06 30.9 3.1 29 215-243 14-42 (43)
55 KOG3592 Microtubule-associated 92.8 0.069 1.5E-06 50.4 2.2 58 37-101 47-104 (934)
56 TIGR00649 MG423 conserved hypo 91.4 0.61 1.3E-05 42.5 6.7 58 215-277 358-418 (422)
57 KOG1137 mRNA cleavage and poly 83.5 19 0.00041 33.7 10.8 88 37-129 161-260 (668)
58 TIGR03675 arCOG00543 arCOG0054 82.2 4.7 0.0001 38.8 7.0 57 215-276 570-629 (630)
59 KOG1138 Predicted cleavage and 67.9 1.1E+02 0.0023 28.7 12.0 41 74-119 92-132 (653)
60 COG0595 mRNA degradation ribon 65.9 12 0.00026 35.4 5.1 58 215-277 368-428 (555)
61 KOG1136 Predicted cleavage and 63.4 22 0.00048 31.2 5.8 58 214-276 387-445 (501)
62 PF14572 Pribosyl_synth: Phosp 60.7 7.2 0.00016 31.1 2.3 54 56-117 92-145 (184)
63 PF07522 DRMBL: DNA repair met 49.0 19 0.0004 26.0 2.7 27 214-240 80-106 (110)
64 COG2075 RPL24A Ribosomal prote 48.7 25 0.00055 22.8 2.9 49 19-81 3-51 (66)
65 PF02593 dTMP_synthase: Thymid 48.0 87 0.0019 25.8 6.7 68 192-270 43-111 (217)
66 COG4068 Uncharacterized protei 40.6 16 0.00035 23.0 1.1 15 17-31 6-20 (64)
67 COG0462 PrsA Phosphoribosylpyr 38.7 33 0.00071 29.9 3.0 33 56-90 223-255 (314)
68 KOG1431 GDP-L-fucose synthetas 37.3 70 0.0015 26.7 4.5 54 53-107 2-56 (315)
69 TIGR01826 CofD_related conserv 37.0 1.2E+02 0.0025 26.6 6.2 65 178-242 150-214 (310)
70 cd07186 CofD_like LPPG:FO 2-ph 36.8 56 0.0012 28.4 4.2 62 177-239 159-222 (303)
71 PF09587 PGA_cap: Bacterial ca 34.9 2E+02 0.0043 23.9 7.3 70 194-264 30-107 (250)
72 COG4892 Predicted heme/steroid 31.7 82 0.0018 20.8 3.3 27 251-278 6-32 (81)
73 smart00854 PGA_cap Bacterial c 31.6 1.9E+02 0.004 23.9 6.5 47 193-239 25-80 (239)
74 PF10013 DUF2256: Uncharacteri 31.5 28 0.0006 20.4 1.0 15 16-30 5-19 (42)
75 PF14149 YhfH: YhfH-like prote 29.8 13 0.00029 21.1 -0.5 14 17-30 11-24 (37)
76 TIGR03365 Bsubt_queE 7-cyano-7 29.2 1.6E+02 0.0034 24.5 5.6 52 218-271 55-109 (238)
77 PTZ00175 diphthine synthase; P 29.0 1.5E+02 0.0032 25.3 5.5 25 185-209 11-35 (270)
78 PRK04923 ribose-phosphate pyro 28.9 56 0.0012 28.6 3.0 36 52-89 218-257 (319)
79 COG4175 ProV ABC-type proline/ 28.8 1.6E+02 0.0035 26.0 5.6 68 196-276 178-246 (386)
80 PF06689 zf-C4_ClpX: ClpX C4-t 28.6 31 0.00068 20.0 0.9 11 20-30 2-12 (41)
81 smart00857 Resolvase Resolvase 28.3 1.8E+02 0.0038 21.6 5.4 37 235-271 68-104 (148)
82 PF01246 Ribosomal_L24e: Ribos 28.0 65 0.0014 21.4 2.5 22 18-45 2-23 (71)
83 cd07187 YvcK_like family of mo 27.7 1E+02 0.0022 27.0 4.3 67 177-243 152-218 (308)
84 PRK02458 ribose-phosphate pyro 27.5 64 0.0014 28.3 3.1 30 57-88 228-257 (323)
85 COG1236 YSH1 Predicted exonucl 26.8 1.1E+02 0.0025 27.9 4.7 31 216-246 369-399 (427)
86 PRK02269 ribose-phosphate pyro 26.0 69 0.0015 28.1 3.0 35 52-88 218-256 (320)
87 PRK14891 50S ribosomal protein 25.3 73 0.0016 23.7 2.5 49 19-81 4-52 (131)
88 COG1782 Predicted metal-depend 25.3 1.3E+02 0.0029 28.2 4.7 56 215-274 577-634 (637)
89 COG0156 BioF 7-keto-8-aminopel 23.7 3.1E+02 0.0068 24.8 6.8 88 180-267 102-206 (388)
90 cd00472 Ribosomal_L24e_L24 Rib 23.7 85 0.0018 19.6 2.3 22 18-45 2-23 (54)
91 PRK07199 phosphoribosylpyropho 23.4 71 0.0015 27.7 2.6 35 51-87 211-249 (301)
92 KOG2121 Predicted metal-depend 23.2 39 0.00085 32.8 1.0 76 50-127 71-148 (746)
93 PF14871 GHL6: Hypothetical gl 22.1 3.4E+02 0.0074 20.3 5.8 15 253-267 48-62 (132)
94 COG0391 Uncharacterized conser 22.0 1.6E+02 0.0035 25.9 4.4 64 178-241 166-230 (323)
95 PF11376 DUF3179: Protein of u 21.7 65 0.0014 27.4 2.0 46 5-62 54-104 (266)
96 COG0602 NrdG Organic radical a 21.3 3E+02 0.0064 22.5 5.7 52 216-269 53-106 (212)
97 PF08915 tRNA-Thr_ED: Archaea- 21.1 3.8E+02 0.0082 20.4 7.2 49 221-269 60-115 (138)
98 PF08018 Antimicrobial_1: Frog 21.1 34 0.00074 17.4 0.1 15 6-22 10-24 (24)
99 cd07044 CofD_YvcK Family of Co 20.9 1.5E+02 0.0032 25.9 4.0 64 178-241 151-215 (309)
100 PTZ00145 phosphoribosylpyropho 20.8 93 0.002 28.6 2.9 37 52-90 336-376 (439)
101 COG3845 ABC-type uncharacteriz 20.6 4E+02 0.0087 25.0 6.8 41 194-240 152-198 (501)
102 PF06415 iPGM_N: BPG-independe 20.5 46 0.001 27.5 0.8 17 86-102 42-58 (223)
103 COG1810 Uncharacterized protei 20.1 4.2E+02 0.0091 21.9 6.1 69 191-270 46-114 (224)
No 1
>PRK02113 putative hydrolase; Provisional
Probab=100.00 E-value=1.5e-41 Score=287.21 Aligned_cols=246 Identities=38% Similarity=0.663 Sum_probs=196.2
Q ss_pred CCCCCCCCcccccccCCCCCCCccccccccCCCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcC
Q 023686 1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTID 80 (278)
Q Consensus 1 ~~~~~~~g~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id 80 (278)
||||+++|+|+++| .|++|.++. +.+.|.++|++|+ .++..+|||||+++..++.+ .++.+||
T Consensus 6 lGtg~~~g~P~~~c------~c~~C~~~~---~~~~R~~~s~li~----~~~~~iLiD~G~g~~~~l~~----~~~~~id 68 (252)
T PRK02113 6 LGSGTSTGVPEIGC------TCPVCTSKD---PRDNRLRTSALVE----TEGARILIDCGPDFREQMLR----LPFGKID 68 (252)
T ss_pred EEeCCCCCeecCCC------CCccCCCCC---CCCcceeeEEEEE----ECCeEEEEECCchHHHHHHh----cCccccC
Confidence 79999999999999 999999986 6789999999999 45789999999987665544 2668999
Q ss_pred EEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceE
Q 023686 81 AVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLK 159 (278)
Q Consensus 81 ~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~ 159 (278)
+|||||.|+||++|++.+..... ..+++||+++.+.+.+.+...+.+.... .+ .....++..+ +++.+++++++
T Consensus 69 ~I~lTH~H~DH~~gl~~l~~~~~--~~~~~i~~~~~~~~~l~~~~~~~~~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~ 143 (252)
T PRK02113 69 AVLITHEHYDHVGGLDDLRPFCR--FGEVPIYAEQYVAERLRSRMPYCFVEHS-YP--GVPNIPLREIEPDRPFLVNHTE 143 (252)
T ss_pred EEEECCCChhhhCCHHHHHHhcc--CCCceEEECHHHHHHHHhhCCeeeccCC-CC--CCcceeeEEcCCCCCEEECCeE
Confidence 99999999999999998865421 2468999999988888765432221110 01 1122455555 57889999999
Q ss_pred EEEEEecCCCCceeeEEEEccEEEecCCCCCCcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEE
Q 023686 160 ITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFI 239 (278)
Q Consensus 160 i~~~~~~H~~~~~~~g~~i~~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~ 239 (278)
|+++++.|+. .+++||++++++|+||+.+.++...+.++++|++++|+.+ ....++|+++++++++++++++++++++
T Consensus 144 i~~~~~~H~~-~~~~gy~i~~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~-~~~~~~H~t~~~a~~~~~~~~~k~l~l~ 221 (252)
T PRK02113 144 VTPLRVMHGK-LPILGYRIGKMAYITDMLTMPEEEYEQLQGIDVLVMNALR-IAPHPTHQSLEEALENIKRIGAKETYLI 221 (252)
T ss_pred EEEEEecCCC-ccEEEEEeCCEEEccCCCCCCHHHHHHhcCCCEEEEhhhc-CCCCCCcCCHHHHHHHHHHhCCCEEEEE
Confidence 9999999975 4789999999999999998777788889999999999976 3456789999999999999999999999
Q ss_pred eeccCCChhhHHHHHHHhhhhCCCceEEeecCeEEee
Q 023686 240 GMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 276 (278)
Q Consensus 240 h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i~~ 276 (278)
|+.+.+.. .+ +..+....++.+|+|||++++
T Consensus 222 H~s~~~~~---~~---~~~~~~~~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 222 HMSHHIGL---HA---DVEKELPPHVHFAYDGLEIIF 252 (252)
T ss_pred cccccchh---HH---HHHHhCCCCceeccCceEEeC
Confidence 99876532 12 223333446899999999975
No 2
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=100.00 E-value=2.6e-39 Score=277.66 Aligned_cols=252 Identities=19% Similarity=0.316 Sum_probs=187.1
Q ss_pred CCCCCCCCcccccccCCCCCCCcccccccc-CCCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCC-----cC
Q 023686 1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVE-PGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFP-----AY 74 (278)
Q Consensus 1 ~~~~~~~g~~~~~~~~~~~~~~~~c~~~~~-~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~-----~~ 74 (278)
||||+++|+|+|+| .|.+|.+|++ ++..+.|.++|++|+. +++..||||||+++..++.+.-+ ..
T Consensus 5 LGtg~s~G~P~~~C------~C~~C~~a~~~~~~~~~R~rss~ll~~---~g~~~iLID~Gpd~r~ql~~~~~~~~~~gl 75 (302)
T TIGR02108 5 LGSAAGGGFPQWNC------NCPNCRGARAGTIGAKARTQSSIAVSA---DGERWVLLNASPDIRQQIQATPALHPQRGL 75 (302)
T ss_pred EEecCCCCCCcCCC------CChhhHHHhcCCCCCccccccEEEEEe---CCCEEEEEECCHHHHHHHHhCcccccccCC
Confidence 79999999999999 9999999987 3445689999999973 45679999999998887765411 24
Q ss_pred CCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCce
Q 023686 75 GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPF 153 (278)
Q Consensus 75 ~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (278)
.+.+||+||+||.|.||+.|++.|.. ..+++||+++.+.+.+++ ++ .+... ....+++..+ .++.+
T Consensus 76 ~~~~IdaI~lTH~H~DHi~GL~~L~~-----~~~lpVya~~~t~~~L~~-~~-~~~~~------~~~~~~~~~i~~~~~~ 142 (302)
T TIGR02108 76 RHTPIAGVVLTDGEIDHTTGLLTLRE-----GQPFTLYATEMVLQDLSD-NP-IFNVL------DHWNVRRQPIALNEKF 142 (302)
T ss_pred CcccCCEEEEeCCCcchhhCHHHHcC-----CCCceEEECHHHHHHHHh-CC-Ccccc------chhhccceEecCCCcE
Confidence 46889999999999999999999853 247999999999999875 22 11110 0001222333 34555
Q ss_pred ee-----cceEEEEEEecCC----------CC--ceeeEEEEc------cEEEecCCCCCCcchhhcccCCCEEEEcCcC
Q 023686 154 TV-----QDLKITPLPVWHG----------AG--YRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALR 210 (278)
Q Consensus 154 ~~-----g~~~i~~~~~~H~----------~~--~~~~g~~i~------~v~~~gD~~~~~~~~~~~~~~~dili~e~~~ 210 (278)
.+ ++++|+++++.|+ .. ..++||+++ +++|++|++..+++++++++++|++++|+++
T Consensus 143 ~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida~~ 222 (302)
T TIGR02108 143 EFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEITDDLKARMAGADLVFFDGTL 222 (302)
T ss_pred EecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeCCC
Confidence 54 3599999999943 11 378999996 3999999998899999999999999999984
Q ss_pred -CC------------CCCCCCCCHH---HHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEE
Q 023686 211 -PD------------RSSSTHFGLP---RALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 274 (278)
Q Consensus 211 -~~------------~~~~~H~~~~---~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i 274 (278)
.+ ....+|++.. ++++++.+.++++++++|++|............+..... .+.++||||+|
T Consensus 223 ~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl~h~~~~~~~~~~~~~~~~~~--~~~~ayDG~~~ 300 (302)
T TIGR02108 223 WRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIARKVLIHINNTNPILDEDSPERAEVEAA--GWEVAYDGMEI 300 (302)
T ss_pred CCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCcEEEEecCCCCcCCCCCCHHHHHHHHc--CCEEecCCcEE
Confidence 22 1345676665 677788888999999999999763111011122223333 58899999999
Q ss_pred ee
Q 023686 275 PV 276 (278)
Q Consensus 275 ~~ 276 (278)
++
T Consensus 301 ~l 302 (302)
T TIGR02108 301 VL 302 (302)
T ss_pred eC
Confidence 75
No 3
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=100.00 E-value=5.4e-39 Score=276.78 Aligned_cols=254 Identities=19% Similarity=0.313 Sum_probs=188.9
Q ss_pred CCCCCCCCcccccccCCCCCCCccccccccCCC-CCcccceeEEEEccCCCCCceEEEecCcchHHHHhhh--C---CcC
Q 023686 1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGN-KNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRW--F---PAY 74 (278)
Q Consensus 1 ~~~~~~~g~~~~~~~~~~~~~~~~c~~~~~~~~-~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~--l---~~~ 74 (278)
||||+++|+|+++| +|.+|.+|++.+. .+.|.++|++|+. .+...||||||+++..++.+. + ...
T Consensus 6 LGtg~~~g~P~~~C------~C~~C~~ar~~~~~~~~R~~ss~li~~---~g~~~iLiD~G~g~~~ql~~~~~~~~~~g~ 76 (302)
T PRK05184 6 LGSAAGGGFPQWNC------NCPNCRGARAGTIRAKPRTQSSIAVSA---DGEDWVLLNASPDIRQQIQATPALQPARGL 76 (302)
T ss_pred EEecCCCCCCcCCC------CchhchhhhcCCCcCCcccccEEEEEc---CCCEEEEEECChhHHHHHHhchhcCccccC
Confidence 79999999999999 9999999997532 4899999999983 234579999999988877664 1 123
Q ss_pred CCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCce
Q 023686 75 GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPF 153 (278)
Q Consensus 75 ~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 153 (278)
.+.+||+|||||.|+||+.|++.+.. ..+++||+++.+.+.+++.+.+ +... . ....+++..+ +++.+
T Consensus 77 ~~~~ldav~lTH~H~DHi~Gl~~l~~-----~~~l~Vyg~~~~~~~l~~~~~~-f~~~---~--~~~~~~~~~i~~~~~~ 145 (302)
T PRK05184 77 RDTPIAAVVLTDGQIDHTTGLLTLRE-----GQPFPVYATPAVLEDLSTGFPI-FNVL---D--HYGGVQRRPIALDGPF 145 (302)
T ss_pred CcccccEEEEeCCchhhhhChHhhcc-----CCCeEEEeCHHHHHHHHhcCCc-cccc---c--cccceeeEEecCCCce
Confidence 45689999999999999999998843 3578999999999888764321 1110 0 0123345555 46678
Q ss_pred eec---ceEEEEEEecCCC-----------CceeeEEEEc------cEEEecCCCCCCcchhhcccCCCEEEEcCcCCCC
Q 023686 154 TVQ---DLKITPLPVWHGA-----------GYRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR 213 (278)
Q Consensus 154 ~~g---~~~i~~~~~~H~~-----------~~~~~g~~i~------~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~ 213 (278)
+++ +++|+++++.|.. +..++||+++ +++|++|+...++++.++++++|++++|+++...
T Consensus 146 ~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da~~~~~ 225 (302)
T PRK05184 146 AVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDALRARLAGADCVLFDGTLWTD 225 (302)
T ss_pred EecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHHHHHHhcCCEEEEeCCCCcC
Confidence 886 8999999998752 1369999992 7999988877788899999999999999974221
Q ss_pred -------------CCCCCCCHH---HHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEEee
Q 023686 214 -------------SSSTHFGLP---RALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 276 (278)
Q Consensus 214 -------------~~~~H~~~~---~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i~~ 276 (278)
...+|++.. ++++++++.++++++++|++|..+........++..+.. .+.+++|||+|++
T Consensus 226 ~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~k~l~ltHl~h~~~~~~~~~~~~~~~~~~--~~~~A~DGm~i~l 302 (302)
T PRK05184 226 DEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPIARKILIHINNTNPILDEDSPERAELEAA--GIEVAHDGMEIEL 302 (302)
T ss_pred HHHHhcccCccccccCCCCCCCChHHHHHHhhcCCCCcEEEEEcCCCChhhccCCHHHHHHHhC--CCEEccCCcEEeC
Confidence 234687754 578888888899999999997643211111223333334 4789999999975
No 4
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=100.00 E-value=2.7e-37 Score=260.66 Aligned_cols=235 Identities=28% Similarity=0.518 Sum_probs=179.0
Q ss_pred CCCCCCCCcccccccCCCCCCCccccccccCCCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcC
Q 023686 1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTID 80 (278)
Q Consensus 1 ~~~~~~~g~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id 80 (278)
||||+++|+|+|+| +|++|..|++. |...|..+|++|+. ++..||||||... +.+ .....+||
T Consensus 6 lGs~~~~~~p~~~c------~c~~c~~~~~~-p~~~r~~~s~li~~----~~~~iLiD~G~~~---~~~---~~~~~~i~ 68 (250)
T PRK11244 6 LGTGGAQGVPVFGC------ECAACARARRD-PAYRRRPCSALIEF----NGARTLIDAGLPD---LAE---RFPPGSLQ 68 (250)
T ss_pred EeccCCCCccCCCc------cchhhhhhhcC-CCCCcceeEEEEEE----CCCEEEEECCChH---Hhh---cCCcccCC
Confidence 79999999999999 99999999984 35689999999984 5689999999653 222 23457999
Q ss_pred EEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceee-eec-cCCceeecce
Q 023686 81 AVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQF-NII-DEEPFTVQDL 158 (278)
Q Consensus 81 ~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~~ 158 (278)
+|||||.|.||++|+..+... ..++++||+++.... +.+.... . ...++ ..+ +++.++++++
T Consensus 69 ~i~iTH~H~DHi~gl~~l~~~---~~~~i~i~~~~~~~~-~~~~~~~----~--------~~~~~~~~l~~~~~~~~~~~ 132 (250)
T PRK11244 69 QILLTHYHMDHVQGLFPLRWG---VGDPIPVYGPPDPEG-CDDLFKH----P--------GILDFSHPLEPFEPFDLGGL 132 (250)
T ss_pred EEEEccCchhhhccHHHHHhh---cCCceeEEeCCchhh-HHHHhcC----c--------cccccccccCCCCCeeECCE
Confidence 999999999999999877432 125688999986532 2111100 0 00111 123 5678999999
Q ss_pred EEEEEEecCCCCceeeEEEEc----cEEEecCCCCCCcchhhcc--cCCCEEEEcCcCCCC--CCCCCCCHHHHHHHHHH
Q 023686 159 KITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL--QDCEILIMDALRPDR--SSSTHFGLPRALEEVRK 230 (278)
Q Consensus 159 ~i~~~~~~H~~~~~~~g~~i~----~v~~~gD~~~~~~~~~~~~--~~~dili~e~~~~~~--~~~~H~~~~~~~~~~~~ 230 (278)
+|+++++.|+. +++||+++ +++|+||+.+.++.+.+++ +++|++++|+++... ...+|+++.++++++++
T Consensus 133 ~I~~~~~~H~~--~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~~~~~~~Dlli~e~~~~~~~~~~~~H~~~~~a~~~a~~ 210 (250)
T PRK11244 133 QVTPLPLNHSK--LTFGYLLETAHSRVAYLTDTVGLPEDTLKFLRNNQPDLLVLDCSHPPQEDAPRNHNDLTTALAIIEV 210 (250)
T ss_pred EEEEEeeCCCc--ceeEEEEecCCeEEEEEcCCCCCCHHHHHHHhcCCCCEEEEeCcCCCCCCCCCCCCCHHHHHHHHHh
Confidence 99999999986 79999997 8999999988776666654 479999999998643 34679999999999999
Q ss_pred hCCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEEee
Q 023686 231 IQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 276 (278)
Q Consensus 231 l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i~~ 276 (278)
.++++++++|+.+.... .+.+. +.....+.+++|||++++
T Consensus 211 ~~~k~lvltH~~~~~~~-----~~~~~-~~~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 211 LRPPRVILTHISHQLDA-----WLMEN-AALPSGVEVAYDGMEIGL 250 (250)
T ss_pred cCCceEEEEcccCCcch-----hhhhh-hhcCCceEEecCccEeeC
Confidence 99999999998764331 11222 333347899999999975
No 5
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=100.00 E-value=3.4e-34 Score=240.11 Aligned_cols=230 Identities=26% Similarity=0.473 Sum_probs=171.4
Q ss_pred CCCcccccccCCCCCCCccccccccCCCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEee
Q 023686 6 SEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIIT 85 (278)
Q Consensus 6 ~~g~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iT 85 (278)
++|+|+|+| +|+.|..|++. +...|..+|++|+. ++..+|||||... +.+ .....+||+||||
T Consensus 1 ~~~~p~~~c------~c~~c~~a~~~-~~~~r~~~s~~i~~----~~~~iliD~G~~~---~~~---~~~~~~id~i~iT 63 (238)
T TIGR03307 1 AQQVPVYGC------DCVACQRARRN-PDYRRQPCSAVIEF----NGARTLIDAGLTD---LAE---RFPPGSLQAILLT 63 (238)
T ss_pred CCCCCcCCc------cchhhHhhhhC-ccccCcceEEEEEE----CCcEEEEECCChh---Hhh---ccCccCCCEEEEe
Confidence 589999999 99999999985 55689999999984 5689999999653 222 2345789999999
Q ss_pred cCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEe
Q 023686 86 HSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPV 165 (278)
Q Consensus 86 H~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~ 165 (278)
|.|.||++|+..+.... .++++||+++.+... ...... . ....+......++.+.+++++|+++++
T Consensus 64 H~H~DHi~gl~~l~~~~---~~~~~v~~~~~~~~~-~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~i~~~~~ 129 (238)
T TIGR03307 64 HYHMDHVQGLFPLRWGV---GEPIPVYGPPDEEGC-DDLFKH----P------GILDFSKPLEAFEPFDLGGLRVTPLPL 129 (238)
T ss_pred cCchhhhcchHHHHHhc---CCceeEEeCchHhhH-HHHhcC----c------ccccccccccCCceEEECCEEEEEEec
Confidence 99999999997775322 246889999875422 221100 0 000011112256788999999999999
Q ss_pred cCCCCceeeEEEEc----cEEEecCCCCCCcchhhccc--CCCEEEEcCcCCCC--CCCCCCCHHHHHHHHHHhCCCeEE
Q 023686 166 WHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDR--SSSTHFGLPRALEEVRKIQPKRTL 237 (278)
Q Consensus 166 ~H~~~~~~~g~~i~----~v~~~gD~~~~~~~~~~~~~--~~dili~e~~~~~~--~~~~H~~~~~~~~~~~~l~~~~~v 237 (278)
.|.. +++||+++ +++|+||+.+.++.+.+.++ ++|++++|+++... ...+|+++.+++++++++++++++
T Consensus 130 ~H~~--~~~g~~i~~~~~~i~y~gDt~~~~~~~~~~~~~~~~D~li~e~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~li 207 (238)
T TIGR03307 130 VHSK--LTFGYLLETDGQRVAYLTDTAGLPPDTEAFLKNHPLDVLILDCSHPPQSDAPRNHNDLTRALAINEQLRPKQVI 207 (238)
T ss_pred CCCC--cceEEEEecCCcEEEEEecCCCCCHHHHHHHhcCCCCEEEEeCCcCccccCCCCcCCHHHHHHHHHHcCCCEEE
Confidence 9986 68999997 89999999887766666665 69999999998532 246799999999999999999999
Q ss_pred EEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEE
Q 023686 238 FIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 274 (278)
Q Consensus 238 ~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i 274 (278)
++|+.+.... .+.+... ...++.+++|||+|
T Consensus 208 l~H~~~~~~~-----~~~~~~~-~~~~~~~a~DG~~~ 238 (238)
T TIGR03307 208 LTHISHQLDA-----WLMENPD-LPSGVAVGYDGQTL 238 (238)
T ss_pred EEecccccch-----HHHhhhh-cCCceEEecccccC
Confidence 9999765431 1112211 22368999999975
No 6
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=100.00 E-value=2.1e-31 Score=230.83 Aligned_cols=231 Identities=18% Similarity=0.172 Sum_probs=173.1
Q ss_pred CCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhh--hccCCCCcc
Q 023686 33 NKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDW--TNNVQRHIP 110 (278)
Q Consensus 33 ~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~--~~~~~~~~~ 110 (278)
|...|+.+|++|+..++..+..+|||||++...++.+. ...+.+||+|||||.|+||++|++.+... ......+++
T Consensus 11 p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~~~l~~~--~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~ 88 (303)
T TIGR02649 11 PTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHT--AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLT 88 (303)
T ss_pred CCCCCCccEEEEEccCCCCCCEEEEECCccHHHHHHHh--CCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeE
Confidence 34578999999985321124789999999987666553 45568999999999999999999987643 222335689
Q ss_pred EEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceEEEEEEecCCCCceeeEEEEc----------
Q 023686 111 IYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVWHGAGYRSLGFRFG---------- 179 (278)
Q Consensus 111 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~H~~~~~~~g~~i~---------- 179 (278)
||+++.+.+.++......... ....+++..+ +++.++.++++|+++++.|.. +++||++.
T Consensus 89 Iygp~~~~~~l~~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~v~~~~~~H~~--~~~gy~i~~~~~~g~~~~ 159 (303)
T TIGR02649 89 IYGPQGIREFVETALRISGSW-------TDYPLEIVEIGAGEILDDGLRKVTAYPLEHPL--ECYGYRIEEHDKPGALNA 159 (303)
T ss_pred EEechhHHHHHHHHHHhcccc-------cCCceEEEEcCCCceEecCCeEEEEEEccCcc--ceEEEEEeccCCcCCCCH
Confidence 999999888776543211000 0112344555 456777788999999999976 89999983
Q ss_pred --------------------------------------------cEEEecCCCCCCcchhhcccCCCEEEEcCcCCCC--
Q 023686 180 --------------------------------------------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-- 213 (278)
Q Consensus 180 --------------------------------------------~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~-- 213 (278)
+++|+||+.+ .+.+.+.++++|+|++|+++...
T Consensus 160 ~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~-~~~~~~~~~~adlLi~Eat~~~~~~ 238 (303)
T TIGR02649 160 QALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP-CDAALDLAKGVDVMVHEATLDITME 238 (303)
T ss_pred HHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCC-hHHHHHHhcCCCEEEEeccCChhhH
Confidence 5899999988 45688899999999999998643
Q ss_pred ---CCCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEEee
Q 023686 214 ---SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 276 (278)
Q Consensus 214 ---~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i~~ 276 (278)
..++|+++.++.+++++.++++++++|+++.+........+.+..+.+. ++.++.|||++++
T Consensus 239 ~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~~~~~~~~~~~-~~~~a~d~~~~~~ 303 (303)
T TIGR02649 239 AKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQHLLRECRSIFP-ATELANDFTVFNV 303 (303)
T ss_pred HHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHHHHHHHHHHCC-CCEecccccEEeC
Confidence 2478999999999999999999999999988765433333444444444 6799999999975
No 7
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.98 E-value=6e-31 Score=227.85 Aligned_cols=224 Identities=22% Similarity=0.263 Sum_probs=169.7
Q ss_pred CCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhh--ccCCCCccE
Q 023686 34 KNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWT--NNVQRHIPI 111 (278)
Q Consensus 34 ~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~--~~~~~~~~v 111 (278)
...|+++|++|+. ++..+|||||++...++.+. ...+.+|++|||||.|+||++|++.+.... .+...+++|
T Consensus 13 ~~~r~~~~~~v~~----~~~~iLiD~G~g~~~~l~~~--~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~I 86 (299)
T TIGR02651 13 TKERNLPSIALKL----NGELWLFDCGEGTQRQMLRS--GISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTI 86 (299)
T ss_pred CCCCCCceEEEEE----CCeEEEEECCHHHHHHHHHc--CCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEE
Confidence 3458999999994 57899999999876666553 345578999999999999999999988642 223346889
Q ss_pred EeccccHHHHHhccccccccccccCCCCccceeeeec-cCC-ceeecceEEEEEEecCCCCceeeEEEEc----------
Q 023686 112 YVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEE-PFTVQDLKITPLPVWHGAGYRSLGFRFG---------- 179 (278)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~i~~~~~~H~~~~~~~g~~i~---------- 179 (278)
|+++.+.+.++......... ....+.+..+ +++ .+..++++|+++++.|.. +++||+++
T Consensus 87 y~p~~~~~~l~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~H~~--~~~gy~i~~~~~~~~~~~ 157 (299)
T TIGR02651 87 YGPPGIKEFIETSLRVSYTY-------LNYPIKIHEIEEGGLVFEDDGFKVEAFPLDHSI--PSLGYRFEEKDRPGKFDR 157 (299)
T ss_pred ECCccHHHHHHHHHHHcccC-------CCceEEEEEccCCCceEecCCEEEEEEEcCCCC--ceEEEEEEECCCCCCcCH
Confidence 99999888776543221100 1112344555 344 588899999999999975 79999974
Q ss_pred --------------------------------------------cEEEecCCCCCCcchhhcccCCCEEEEcCcCCCC--
Q 023686 180 --------------------------------------------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-- 213 (278)
Q Consensus 180 --------------------------------------------~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~-- 213 (278)
+++|+||+.+. +++.+.++++|+|++|+++.+.
T Consensus 158 ~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~-~~~~~~~~~~dlLi~E~~~~~~~~ 236 (299)
T TIGR02651 158 EKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPC-EEVIEFAKNADLLIHEATFLDEDK 236 (299)
T ss_pred HHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCCh-HHHHHHHcCCCEEEEECCCCchhH
Confidence 59999999885 4577889999999999998753
Q ss_pred ---CCCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEEee
Q 023686 214 ---SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 276 (278)
Q Consensus 214 ---~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i~~ 276 (278)
..++|+++.++++++++.++++++++|+++.+.. ..+.+.+..+.++ ++.+++|||++++
T Consensus 237 ~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~--~~~~~~~~~~~~~-~~~~a~dg~~~~~ 299 (299)
T TIGR02651 237 KLAKEYGHSTAAQAAEIAKEANVKRLILTHISPRYSD--EEELLEEAKKIFP-NTYIAEDFMEIEI 299 (299)
T ss_pred HHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccccCC--hHHHHHHHHHhCC-CcEEccCccEeeC
Confidence 2478999999999999999999999999987653 2222223333344 7999999999975
No 8
>PRK00055 ribonuclease Z; Reviewed
Probab=99.95 E-value=1.5e-27 Score=203.54 Aligned_cols=232 Identities=20% Similarity=0.147 Sum_probs=152.4
Q ss_pred CCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhh--ccCCCCccE
Q 023686 34 KNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWT--NNVQRHIPI 111 (278)
Q Consensus 34 ~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~--~~~~~~~~v 111 (278)
...|+++|++|+. +++.+|||||++...++.+. ...+.+||+|||||.|+||++|++.+.... .++.++++|
T Consensus 15 ~~~r~~~~~li~~----~~~~iLiD~G~g~~~~l~~~--~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~i 88 (270)
T PRK00055 15 TPTRNVSSILLRL----GGELFLFDCGEGTQRQLLKT--GIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTI 88 (270)
T ss_pred cCCCCCCEEEEEE----CCcEEEEECCHHHHHHHHHc--CCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEE
Confidence 3468899999984 56899999999876666543 455678999999999999999999887543 223456889
Q ss_pred EeccccHHHHHhcccc--ccccccccCCCCccceeee-----ec-cCCce-ee-cceEEEEEEecCCCCceeeEEEEc--
Q 023686 112 YVAMRDFEVMKKTHYY--LVDTSGIIPGAAVSELQFN-----II-DEEPF-TV-QDLKITPLPVWHGAGYRSLGFRFG-- 179 (278)
Q Consensus 112 ~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~-----~~-~~~~~-~~-g~~~i~~~~~~H~~~~~~~g~~i~-- 179 (278)
|+++...+.++..... +..+....+. ....+... .+ .+..+ ++ .+..+.. ..|..-.++++|+++
T Consensus 89 y~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~i~~~~~~~~~~~ 165 (270)
T PRK00055 89 YGPKGIKEFVETLLRASGSLGYRIAEKD-KPGKLDAEKLKALGVPPGPLFGKLKRGEDVTL--EDGRIINPADVLGPPRK 165 (270)
T ss_pred ECCccHHHHHHHHHHHhhceeEEEEEcC-CCCCCCHHHHHHCCCCCCchHHHhhCCCeEEe--CCCcEEeHHHeeccCCC
Confidence 9999887766542211 0000000000 00000000 00 01000 00 1222221 122210156788885
Q ss_pred --cEEEecCCCCCCcchhhcccCCCEEEEcCcCCCCC-----CCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChhhHHH
Q 023686 180 --NICYISDVSEIPEETYPFLQDCEILIMDALRPDRS-----SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNE 252 (278)
Q Consensus 180 --~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~~-----~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~ 252 (278)
+++|+||+.+. +...+.++++|++++|+++.... ..+|+++.+++++++++++++++++|+++.+.. ...+
T Consensus 166 g~~~~y~~Dt~~~-~~~~~~~~~~d~li~E~~~~~~~~~~~~~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~-~~~~ 243 (270)
T PRK00055 166 GRKVAYCGDTRPC-EALVELAKGADLLVHEATFGDEDEELAKEYGHSTARQAAEIAKEAGVKRLILTHFSPRYTG-DPEE 243 (270)
T ss_pred CcEEEEeCCCCCc-HHHHHHhCCCCEEEEeccCCcchhhHHhhcCCCCHHHHHHHHHHcCCCEEEEEeeccccCC-CHHH
Confidence 89999999986 45788889999999999987542 478999999999999999999999999887652 1122
Q ss_pred HHHHhhhhCCCceEEeecCeEEeec
Q 023686 253 ELLKLMETEGLDVQLSYDGLRVPVM 277 (278)
Q Consensus 253 ~~~~~~~~~g~~v~~~~dg~~i~~~ 277 (278)
..++..+.++ ++.+++|||+++++
T Consensus 244 ~~~~~~~~~~-~v~~a~Dg~~i~l~ 267 (270)
T PRK00055 244 LLKEAREIFP-NTELAEDLMRVEVP 267 (270)
T ss_pred HHHHHHHHcC-CcEEccCCcEEEec
Confidence 2222223333 89999999999875
No 9
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.95 E-value=5.8e-27 Score=200.59 Aligned_cols=235 Identities=23% Similarity=0.213 Sum_probs=160.8
Q ss_pred CCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhh--hccCCCCcc
Q 023686 33 NKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDW--TNNVQRHIP 110 (278)
Q Consensus 33 ~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~--~~~~~~~~~ 110 (278)
|...|..+|++|+. .+..+|||||.+...++.+. ...+.+|++|||||.|.||+.|++.+... +.....++.
T Consensus 14 Pt~~r~~~s~ll~~----~~~~~L~DcGeGt~~~l~~~--~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~ 87 (292)
T COG1234 14 PTKDRNVSSILLRL----EGEKFLFDCGEGTQHQLLRA--GLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLK 87 (292)
T ss_pred CcCccccceeEEEe----CCeeEEEECCHhHHHHHHHh--cCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCcee
Confidence 34579999999994 57899999999987777764 55567999999999999999999987765 333334689
Q ss_pred EEeccccHHHHHhcccccc---ccccccC--------------CCCccceeeeeccCCceeec------------ceEEE
Q 023686 111 IYVAMRDFEVMKKTHYYLV---DTSGIIP--------------GAAVSELQFNIIDEEPFTVQ------------DLKIT 161 (278)
Q Consensus 111 v~~~~~~~~~l~~~~~~~~---~~~~~~~--------------~~~~~~~~~~~~~~~~~~~g------------~~~i~ 161 (278)
||+|+...+.+........ .+..... ...+....+...+ ....+ +..++
T Consensus 88 iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~~~~~v~~~~~~h~~~~~~y~~~e--~~~~~~~~~~~~~~~~~g~~~~ 165 (292)
T COG1234 88 IYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEEDAFEVEALELDHGVPALGYRIEE--PDRPGRFDAEKLKGLPPGPLIT 165 (292)
T ss_pred EECCcchhhhhhhhhhhcccccceEEEEEEeccCceEEEEEecCCCccccceeeec--CCCcCcCCHHHhcCCCCchHHH
Confidence 9999887766654321110 0000000 0000011111111 11111 45666
Q ss_pred EEEecCCCC--ceeeEEEEc------cEEEecCCCCCCcchhhcccCCCEEEEcCcCCCC----CCC-CCCCHHHHHHHH
Q 023686 162 PLPVWHGAG--YRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR----SSS-THFGLPRALEEV 228 (278)
Q Consensus 162 ~~~~~H~~~--~~~~g~~i~------~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~----~~~-~H~~~~~~~~~~ 228 (278)
.++..|+.. ..+.++++. +|+|+||+.+.+ ++.+..+++|+||+|+++.+. ... +|++..|+.+.+
T Consensus 166 ~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~-~~~~~a~~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA 244 (292)
T COG1234 166 ALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCD-ELIDLAKGADLLIHEATFEDDLEDLANEGGHSTAEEAAEIA 244 (292)
T ss_pred HHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCH-HHHHHhcCCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHH
Confidence 677777731 133344443 899999999864 588888999999999998653 223 399999999999
Q ss_pred HHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEEeec
Q 023686 229 RKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVM 277 (278)
Q Consensus 229 ~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i~~~ 277 (278)
++.++++++++|+++.+. ....+.+++..+.+..++.++.|++++++.
T Consensus 245 ~~A~vk~LiLtH~s~ry~-~~~~~~~~ea~~~f~~~~~~a~D~~~~~v~ 292 (292)
T COG1234 245 KEAGVKKLILTHFSPRYP-KDDEELLKEARAIFPGETIVARDGLVFEVP 292 (292)
T ss_pred HHcCCCeEEEEeeccccc-chHHHHHHHHHHhCCCceEEeccceEEecC
Confidence 999999999999999997 222333445445555469999999999873
No 10
>PRK02126 ribonuclease Z; Provisional
Probab=99.93 E-value=1.1e-24 Score=189.72 Aligned_cols=202 Identities=18% Similarity=0.238 Sum_probs=146.8
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 116 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~ 116 (278)
...+|+++... .++..+|||||. ..++. ..++.+|++||+||.|.||++|++.|+.....+.++++||+++.
T Consensus 14 ~~dn~~~l~~~--~~~~~iLiD~G~--~~~l~----~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~ 85 (334)
T PRK02126 14 FDDPGLYVDFL--FERRALLFDLGD--LHHLP----PRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPG 85 (334)
T ss_pred CCCcEEEEEEC--CCCeEEEEcCCC--HHHHh----hcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHH
Confidence 34556666642 357899999998 23333 34678999999999999999999999977544445789999999
Q ss_pred cHHHHHhccc-cccccc-cccCCCCcccee----------e-------------eec-cCCceeecceEEEEEEecCCCC
Q 023686 117 DFEVMKKTHY-YLVDTS-GIIPGAAVSELQ----------F-------------NII-DEEPFTVQDLKITPLPVWHGAG 170 (278)
Q Consensus 117 ~~~~l~~~~~-~~~~~~-~~~~~~~~~~~~----------~-------------~~~-~~~~~~~g~~~i~~~~~~H~~~ 170 (278)
+.+.++..+. +.+... .+.+.-.+.... + ... ++..++.++++|+++++.|+.
T Consensus 86 ~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~v- 164 (334)
T PRK02126 86 FADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGI- 164 (334)
T ss_pred HHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCC-
Confidence 9998877553 111100 000000000000 0 001 223466789999999999987
Q ss_pred ceeeEEEEc-----------------------------------------------------------------------
Q 023686 171 YRSLGFRFG----------------------------------------------------------------------- 179 (278)
Q Consensus 171 ~~~~g~~i~----------------------------------------------------------------------- 179 (278)
+++||+++
T Consensus 165 -p~~gy~~~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~ 243 (334)
T PRK02126 165 -PCLAFALEEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQ 243 (334)
T ss_pred -ceeEEEEEecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCC
Confidence 88999884
Q ss_pred cEEEecCCCCCCc---chhhcccCCCEEEEcCcCCCC-----CCCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChh
Q 023686 180 NICYISDVSEIPE---ETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHE 248 (278)
Q Consensus 180 ~v~~~gD~~~~~~---~~~~~~~~~dili~e~~~~~~-----~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~ 248 (278)
+++|+||+++.++ .+.+.++++|+||+|+++... ..++|+++.++.+++++.++++++++|+++.+...
T Consensus 244 ~v~y~gDT~~~~~~~~~l~~~a~~aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~~~~ 320 (334)
T PRK02126 244 KIGYVTDIGYTEENLARIVELAAGVDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREAGVKRLLPFHFSPRYQGR 320 (334)
T ss_pred EEEEECCCCCCcccHHHHHHHHcCCCEEEEEcccChHHhhhcccCCCCCHHHHHHHHHHcCCCEEEEEecCcccCCc
Confidence 4999999998764 367888899999999998753 34789999999999999999999999999887543
No 11
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.92 E-value=5.9e-24 Score=177.06 Aligned_cols=207 Identities=17% Similarity=0.188 Sum_probs=149.4
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 116 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~ 116 (278)
-|++|++|+ .++.++||||+..-.. . ..+..... ++|+|++||.|.||++++..+... ++.++|+++.
T Consensus 6 lG~s~~li~----~~~~~iLiDP~~~~~~-~-~~~~~~~~-~id~vliTH~H~DH~~~~~~~~~~-----~~~~v~~~~~ 73 (228)
T PRK00685 6 LGHSAFLIE----TGGKKILIDPFITGNP-L-ADLKPEDV-KVDYILLTHGHGDHLGDTVEIAKR-----TGATVIANAE 73 (228)
T ss_pred EcceEEEEE----ECCEEEEECCCCCCCC-C-CCCChhcC-cccEEEeCCCCccccccHHHHHHh-----CCCEEEEeHH
Confidence 468999999 5789999998653100 0 01111223 899999999999999998776542 4578999988
Q ss_pred cHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceEEEEEEecCCCCce----------eeEEEEc----cE
Q 023686 117 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVWHGAGYR----------SLGFRFG----NI 181 (278)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~H~~~~~----------~~g~~i~----~v 181 (278)
..+.++... .. ++..+ .++.+++++++|+++|+.|+.... ++||+++ ++
T Consensus 74 ~~~~~~~~~--------------~~--~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i 137 (228)
T PRK00685 74 LANYLSEKG--------------VE--KTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTI 137 (228)
T ss_pred HHHHHHhcC--------------CC--ceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEE
Confidence 776665421 00 22334 567899999999999999976321 5899996 99
Q ss_pred EEecCCCCCCcc-hhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhh
Q 023686 182 CYISDVSEIPEE-TYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMET 260 (278)
Q Consensus 182 ~~~gD~~~~~~~-~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~ 260 (278)
+|+||+.+.++. ......++|++++... ...|+++.+++++++++++++++++|+..........+++++.+++
T Consensus 138 ~~~GDt~~~~~~~~~~~~~~~D~~~~~~~-----~~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~ 212 (228)
T PRK00685 138 YHAGDTGLFSDMKLIGELHKPDVALLPIG-----DNFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEG 212 (228)
T ss_pred EEecCccchhHHHHHHHhhCCCEEEEecC-----CccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHh
Confidence 999999886642 2232346899988642 2469999999999999999999999986543211124555566655
Q ss_pred CCCceEEeecCeEEee
Q 023686 261 EGLDVQLSYDGLRVPV 276 (278)
Q Consensus 261 ~g~~v~~~~dg~~i~~ 276 (278)
.+.++.++.+|+.+++
T Consensus 213 ~~~~~~~~~~G~~~~~ 228 (228)
T PRK00685 213 LGTKVVILKPGESIEL 228 (228)
T ss_pred cCCcEEECCCCCEeeC
Confidence 7789999999999875
No 12
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.90 E-value=5.6e-23 Score=166.72 Aligned_cols=176 Identities=28% Similarity=0.392 Sum_probs=126.5
Q ss_pred ceEEEecCcchHHHH--h-hhCCc-CCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhc-ccc
Q 023686 53 RNILIDAGKFFYHSA--L-RWFPA-YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKT-HYY 127 (278)
Q Consensus 53 ~~iLiD~G~~~~~~~--~-~~l~~-~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~-~~~ 127 (278)
++||||||++.. ++ . +.... ..+.+||+|||||.|.||+.|++.+......... +||+++.+.+.+++. ...
T Consensus 1 ~~iLiD~g~~~~-~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~--~i~~~~~~~~~l~~~~~~~ 77 (194)
T PF12706_consen 1 HRILIDCGPGTR-SLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK--PIYGPPETKEFLREYKFGI 77 (194)
T ss_dssp SEEEESE-TTHH-HHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT--EEEECHHHHHHHHHHHHTH
T ss_pred CEEEEeCCCCcc-cccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc--eEEecHHHHHHHHhhhccc
Confidence 479999999865 22 1 11111 1234999999999999999999998876432212 899999999988842 111
Q ss_pred ccccccccCCCCccceeeeec-cCCceeecceEEEEEEecCCCCceee--EEEEc----cEEEecCCCCCCcchhhcccC
Q 023686 128 LVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVWHGAGYRSL--GFRFG----NICYISDVSEIPEETYPFLQD 200 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~H~~~~~~~--g~~i~----~v~~~gD~~~~~~~~~~~~~~ 200 (278)
.... ......++..+ +++.+++++++|+++|+.|..+..+. ||+++ +++|+||+.+ . .+.+++
T Consensus 78 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~-~---~~~~~~ 147 (194)
T PF12706_consen 78 LDLY------PEEDNFDIIEISPGDEFEIGDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY-D---FEELKN 147 (194)
T ss_dssp HTTC------CTTSGEEEEEECTTEEEEETTEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS-C---HHHHTT
T ss_pred cccc------ccccceeEEEeccCceEEeceEEEEEEeccccccccccCceEEEecCCcceEEeeccch-h---hhhhcc
Confidence 0000 01222344444 45689999999999999999843220 28886 8999999988 2 355588
Q ss_pred CCEEEEcCcCCC------CCCCCCCCHHHHHHHHHHhCCCeEEEEee
Q 023686 201 CEILIMDALRPD------RSSSTHFGLPRALEEVRKIQPKRTLFIGM 241 (278)
Q Consensus 201 ~dili~e~~~~~------~~~~~H~~~~~~~~~~~~l~~~~~v~~h~ 241 (278)
+|++++|+.+.. .....|+++.+++++++++++++++++|+
T Consensus 148 ~D~li~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 148 IDLLILECGYIDEEEEPPARGPGHMTLEEALELAKELKAKKVILIHF 194 (194)
T ss_dssp BSEEEEEBCBSSGGHHCHHCCTTSBBHHHHHHHHHHHTTSEEEEESB
T ss_pred CCEEEEeCCCcchhhcccccCCCCCCHHHHHHHHHHcCCCEEEEECC
Confidence 999999999872 34588999999999999999999999995
No 13
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.89 E-value=6.7e-22 Score=168.40 Aligned_cols=218 Identities=29% Similarity=0.489 Sum_probs=133.2
Q ss_pred CCCCCCCCcccccccCCCCCCCccccccccCCCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcC
Q 023686 1 MGTGTSEGIPRVSCLTNPSKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTID 80 (278)
Q Consensus 1 ~~~~~~~g~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id 80 (278)
||||.++|.|+|+| .|..|+ +.|......+. .++++||+|++...+..+ ..++.+|
T Consensus 9 lgsG~~gg~p~~~~------~~~~c~--------~~~~~v~~~~~------~~~~lid~g~~~~~~~~~----~~~~~id 64 (269)
T COG1235 9 LGSGSSGGVPVIGC------DCRACG--------GNRLRVDCGVG------VKTLLIDAGPDLRDQGLR----LGVSDLD 64 (269)
T ss_pred EEEcCCCCceecCC------CccccC--------CceEEEEEEec------ceeEEEecChhHHhhhhc----ccccccC
Confidence 69999999999999 999999 13444455554 249999999986554443 3346899
Q ss_pred EEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHH-----HhccccccccccccCCC--Cccceeee--eccCC
Q 023686 81 AVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVM-----KKTHYYLVDTSGIIPGA--AVSELQFN--IIDEE 151 (278)
Q Consensus 81 ~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l-----~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~ 151 (278)
+||+||.|+||+.|++.|...+. .+++......... .+.+.+.+.... .... .....++. .++.+
T Consensus 65 ai~~TH~H~DHi~Gl~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~hd 138 (269)
T COG1235 65 AILLTHEHSDHIQGLDDLRRAYT-----LPIYVNPGTLRASTSDRLLGGFPYLFRHPF-PPFSLPAIGGLEVTPFPVPHD 138 (269)
T ss_pred eEEEecccHHhhcChHHHHHHhc-----CCcccccceecccchhhhhccchhhhcCCC-CccccccccceeeecCCCCCc
Confidence 99999999999999999998753 2333333222221 221111111000 0000 00111111 11122
Q ss_pred ceeecceEEEEEEecCCCCceeeEEE----EccEEEecCCCCCCcchhhcc---cCCCEEEEcCcCCCC-CCCCCCCHHH
Q 023686 152 PFTVQDLKITPLPVWHGAGYRSLGFR----FGNICYISDVSEIPEETYPFL---QDCEILIMDALRPDR-SSSTHFGLPR 223 (278)
Q Consensus 152 ~~~~g~~~i~~~~~~H~~~~~~~g~~----i~~v~~~gD~~~~~~~~~~~~---~~~dili~e~~~~~~-~~~~H~~~~~ 223 (278)
.++..+..+......+.. ....||. .+.+.|.+|+..++++....+ ...++.+.+..++.. -.++|..+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~gh~~~h~~~~~ 217 (269)
T COG1235 139 AIEPVGFVIIRTGRKLHG-GTDIGYGLEWRIGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPGHLSNHLSAEE 217 (269)
T ss_pred cccCCCcccccCcccccc-cccceeeeeeeeccEEEccccccCcchhHHHHhcCCccceeeeeccccccCCCCCchhHHH
Confidence 222222222111111111 1334444 348889999998876554444 346677777776553 2467999999
Q ss_pred HHHHHHHhCCCeEEEEeeccCCChhh
Q 023686 224 ALEEVRKIQPKRTLFIGMMHLMDHEK 249 (278)
Q Consensus 224 ~~~~~~~l~~~~~v~~h~~~~~~~~~ 249 (278)
++++++...+++++++|+++......
T Consensus 218 a~~~~~~~~~~rivLtHls~~~~~~~ 243 (269)
T COG1235 218 ALELIEKLKPKRLVLTHLSHKNDDEE 243 (269)
T ss_pred HHHHHHhCCcceEEEEecCCCCCHHH
Confidence 99999999999999999999888543
No 14
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.88 E-value=8e-22 Score=164.51 Aligned_cols=199 Identities=14% Similarity=0.127 Sum_probs=140.3
Q ss_pred CceEEEe-cCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhh---hccCCCCccEEeccccHHHHHhcccc
Q 023686 52 RRNILID-AGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDW---TNNVQRHIPIYVAMRDFEVMKKTHYY 127 (278)
Q Consensus 52 ~~~iLiD-~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~---~~~~~~~~~v~~~~~~~~~l~~~~~~ 127 (278)
...|||| +|.+....+.+ .+..++.+||||.|.||++|++.+... .....++++||+|+...+..++....
T Consensus 18 ~~~ilfD~ag~g~~~~l~~-----k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~ 92 (277)
T TIGR02650 18 PEEIIFDAAEEGSSTLGGK-----KVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEF 92 (277)
T ss_pred chhheehhhcccchhHHhh-----hHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHH
Confidence 5899999 99886554432 356889999999999999999766542 22234567899999877766632211
Q ss_pred ccccccccCCCCccceeeeeccCC-ceeec----ceEEEEEEecCC-CCceeeEEEEc----------------------
Q 023686 128 LVDTSGIIPGAAVSELQFNIIDEE-PFTVQ----DLKITPLPVWHG-AGYRSLGFRFG---------------------- 179 (278)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g----~~~i~~~~~~H~-~~~~~~g~~i~---------------------- 179 (278)
.-..... .....++..++++ .+.+. ...|+++++.|. .+.+|+||.+.
T Consensus 93 ~~~~~~~----~~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~ 168 (277)
T TIGR02650 93 IKAANED----LFFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLK 168 (277)
T ss_pred HHHhhhh----hccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHHH
Confidence 1111100 1122334444443 33343 278999999998 34579999980
Q ss_pred --------------cEEEecCCCCCCcchhhcccCCCEEEEcCcCCCCC---CCCCCCHHHHHHHHHHhCCCeEEEEeec
Q 023686 180 --------------NICYISDVSEIPEETYPFLQDCEILIMDALRPDRS---SSTHFGLPRALEEVRKIQPKRTLFIGMM 242 (278)
Q Consensus 180 --------------~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~~---~~~H~~~~~~~~~~~~l~~~~~v~~h~~ 242 (278)
+++|+||+.+.+. +..+++|+||+|++|.+.. ..+|++..++.+.+++.+.++++++|++
T Consensus 169 ~~gg~~~t~e~~~~~vvysGDT~~~~~---~~a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~a~vk~LiLtH~S 245 (277)
T TIGR02650 169 EEGGDDFTREEHHKILLIIGDDLAADD---EEEEGGEELIHECCFFDDADDRRKKHAAADDEMEESKKAAGKKKIILHHI 245 (277)
T ss_pred HhCCccccccccCcEEEEeCCCCCCCh---HHhcCCCEEEEecccccccccccCCCCCHHHHHHHHHHcCCCEEEEEeec
Confidence 7999999987643 6677999999999987642 3579999999999999999999999999
Q ss_pred cCCChhhHHHHHHHhhhhCC
Q 023686 243 HLMDHEKVNEELLKLMETEG 262 (278)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~g 262 (278)
..+..+...+.++++.++..
T Consensus 246 sry~~~~~~~~~~~~~~~~~ 265 (277)
T TIGR02650 246 SRRIIRILKSIIKKREEEMD 265 (277)
T ss_pred ccccHHHHHHHHHHHHhhcC
Confidence 88766544455555545444
No 15
>PRK04286 hypothetical protein; Provisional
Probab=99.87 E-value=1.7e-21 Score=167.84 Aligned_cols=231 Identities=17% Similarity=0.180 Sum_probs=142.7
Q ss_pred cccceeEEEEccCCCCCceEEEecCcchH-------------HHHhhhCC--cCCCCCcCEEEeecCChhhhCChHHHHh
Q 023686 36 RRLNTSILIRYPGPSGRRNILIDAGKFFY-------------HSALRWFP--AYGIRTIDAVIITHSHADAIGGLDDLRD 100 (278)
Q Consensus 36 ~~~~~s~li~~~~~~~~~~iLiD~G~~~~-------------~~~~~~l~--~~~~~~Id~v~iTH~H~DH~~gl~~l~~ 100 (278)
.+.++|++|. .++..||||+|.... +.+...+. ...+.+||+||+||.|+||+.|+..+.-
T Consensus 12 g~~~~~~~I~----~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y 87 (298)
T PRK04286 12 GVRSMATFVE----TKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPY 87 (298)
T ss_pred CceeeEEEEE----ECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCcccccc
Confidence 3667888998 468999999995420 11111111 1225789999999999999988776521
Q ss_pred hhccCCCCccEEeccccHHHH-Hhcccc--ccccccccCCCCccc--eeeeeccCCceeecceEEEEE-EecCCCCceee
Q 023686 101 WTNNVQRHIPIYVAMRDFEVM-KKTHYY--LVDTSGIIPGAAVSE--LQFNIIDEEPFTVQDLKITPL-PVWHGAGYRSL 174 (278)
Q Consensus 101 ~~~~~~~~~~v~~~~~~~~~l-~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~i~~~-~~~H~~~~~~~ 174 (278)
..+.+..+.++|.+..+.... ...... ....... .. .+.. ......+++.+.+++++|++. ++.|.....++
T Consensus 88 ~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~ 165 (298)
T PRK04286 88 ELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAPRF-LK-AVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKL 165 (298)
T ss_pred ccccccchHHHhcCceecccCHHHHcCHHHHhhHHhH-HH-HHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCcc
Confidence 100111234566654443110 000000 0000000 00 0001 112334677899999999966 77897521466
Q ss_pred EEEE----c----cEEEecCCC-CCCcchhhccc--CCCEEEEcCc--CCCCCCCCCCCHHHHHHHHHHh---CCCeEEE
Q 023686 175 GFRF----G----NICYISDVS-EIPEETYPFLQ--DCEILIMDAL--RPDRSSSTHFGLPRALEEVRKI---QPKRTLF 238 (278)
Q Consensus 175 g~~i----~----~v~~~gD~~-~~~~~~~~~~~--~~dili~e~~--~~~~~~~~H~~~~~~~~~~~~l---~~~~~v~ 238 (278)
||.+ + +++|+||++ ..++.+.+.++ ++|+|+.++. +.......|.....+.+.+.++ +++++++
T Consensus 166 Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~ri~~~~~h~s~~~~~~l~~~~~k~liL 245 (298)
T PRK04286 166 GYVIMVRISDGDESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGRRLSEEDLEKGIENLEEIVKNTPETLIL 245 (298)
T ss_pred ceEEEEEEEeCCEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhhhhccccHHHHHHHHHHHHhcCCCEEEE
Confidence 6654 3 899999999 66777777776 8999999984 3221333334444444444444 9999999
Q ss_pred E-eeccCCChhhHHHHHHHhhhhCCCceEEeecCe
Q 023686 239 I-GMMHLMDHEKVNEELLKLMETEGLDVQLSYDGL 272 (278)
Q Consensus 239 ~-h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~ 272 (278)
+ |+++..+.......+.+.++..++++..|.|-|
T Consensus 246 tHHls~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~ 280 (298)
T PRK04286 246 DHHLLRDKNYREKLKELYERAEDRGVRVLTAAEFL 280 (298)
T ss_pred eccccccCCcHHHHHHHHHHHhhcCceEEeHHHHc
Confidence 9 788777777777888888999998888887744
No 16
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.86 E-value=1.7e-20 Score=169.63 Aligned_cols=213 Identities=17% Similarity=0.254 Sum_probs=141.8
Q ss_pred CCCCcccceeEEEEccCCCCCceEEEecCcchHH-HH---------hhhCCcCCCCCcCEEEeecCChhhhCChHHHHhh
Q 023686 32 GNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYH-SA---------LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDW 101 (278)
Q Consensus 32 ~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~-~~---------~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~ 101 (278)
|+..+.|.+|++++ .++..+|||||..... .+ .+++.. ...+|++|||||+|.||++|++.+...
T Consensus 7 GG~~eiG~n~~ll~----~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~-~~~~i~~I~iTH~H~DHiggl~~l~~~ 81 (422)
T TIGR00649 7 GGLGEIGKNMYVVE----IDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQE-NQDKVKGIFITHGHEDHIGAVPYLFHT 81 (422)
T ss_pred cCCCccCCeEEEEE----ECCeEEEEeCCCCCCcccccCCccccCCHHHHHh-ccccCCEEEECCCChHHhCcHHHHHHh
Confidence 56678999999998 4678999999986421 11 112222 246899999999999999999999875
Q ss_pred hccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCceeec-ceEEEEEEecCCCCceeeEEEEc
Q 023686 102 TNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQ-DLKITPLPVWHGAGYRSLGFRFG 179 (278)
Q Consensus 102 ~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~i~~~~~~H~~~~~~~g~~i~ 179 (278)
. ...+||+++.+...++...... . . .. ...+..+ .++.++++ +++|+++++.|+. .++++|+++
T Consensus 82 ~----~~~~Vy~~~~t~~~l~~~~~~~---~--~---~~-~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~-p~s~g~~i~ 147 (422)
T TIGR00649 82 V----GFPPIYGTPLTIALIKSKIKEN---K--L---NV-RTDLLEIHEGEPIETGENHTIEFIRITHSI-PDSVGFALH 147 (422)
T ss_pred C----CCCeEEeCHHHHHHHHHHHHhc---C--C---CC-CCceEEeCCCCEEEeCCceEEEEEECCCCC-cceEEEEEE
Confidence 4 2368999999888776543210 0 0 00 1123344 56789996 5999999999975 268999985
Q ss_pred ----cEEEecCCCCCCc-------c---hhhc-ccCCCEEEEcCcCCCCCC---CCCCCHHHHHHHHHHhCCCeEEEEee
Q 023686 180 ----NICYISDVSEIPE-------E---TYPF-LQDCEILIMDALRPDRSS---STHFGLPRALEEVRKIQPKRTLFIGM 241 (278)
Q Consensus 180 ----~v~~~gD~~~~~~-------~---~~~~-~~~~dili~e~~~~~~~~---~~H~~~~~~~~~~~~l~~~~~v~~h~ 241 (278)
+++|+||+..... + +.+. .+++|++++|+++..... ..|...+++.+.+++.+ .+++++|+
T Consensus 148 ~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~~e~~~~~~i~~~~~~~~-~~viv~~f 226 (422)
T TIGR00649 148 TPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTPSEAKVLEQLNDIFKNAK-GRVIVATF 226 (422)
T ss_pred eCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhCC-CEEEEEEc
Confidence 7999999865221 1 1111 246899999999874322 23444455555665544 56888887
Q ss_pred ccCCChhhHHHHHHHhhhhCCCceEE
Q 023686 242 MHLMDHEKVNEELLKLMETEGLDVQL 267 (278)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~v~~ 267 (278)
..... ...++.+.+++++.+|.+
T Consensus 227 a~~~~---R~~~i~~~a~~~~r~v~v 249 (422)
T TIGR00649 227 ASNIH---RVQQLIQIARKQGRKFAV 249 (422)
T ss_pred cccHH---HHHHHHHHHHHhCCEEEE
Confidence 63322 234566667777766654
No 17
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.83 E-value=5.4e-19 Score=154.73 Aligned_cols=203 Identities=18% Similarity=0.182 Sum_probs=133.8
Q ss_pred ccceeEEEEccCCCCCceEEEec--Ccch--------------H-----HHHhhhCCc-------CCCCCcCEEEeecCC
Q 023686 37 RLNTSILIRYPGPSGRRNILIDA--GKFF--------------Y-----HSALRWFPA-------YGIRTIDAVIITHSH 88 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~--G~~~--------------~-----~~~~~~l~~-------~~~~~Id~v~iTH~H 88 (278)
-|+++++|+. .++.+||||. |.+. . +.+.+.++. .+++.||+|+|||.|
T Consensus 43 lG~a~~li~~---~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~IDaVLiTH~H 119 (355)
T PRK11709 43 LGCTGIWLKT---EGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIREIDAVLATHDH 119 (355)
T ss_pred ecceEEEEEc---CCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCCCCEEEECCCc
Confidence 3999999985 3689999995 2110 0 011111222 245799999999999
Q ss_pred hhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceEEEEEEecC
Q 023686 89 ADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVWH 167 (278)
Q Consensus 89 ~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~H 167 (278)
.||+. .+.+........++.+++++....+.+... .+...++.++ .++++++++++|+++|+.|
T Consensus 120 ~DHlD-~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~--------------Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h 184 (355)
T PRK11709 120 SDHID-VNVAAAVLQNCADHVKFIGPQACVDLWIGW--------------GVPKERCIVVKPGDVVKVKDIKIHALDSFD 184 (355)
T ss_pred ccccC-hHHHHHHHhhcCCCcEEEEcHHHHHHHHhc--------------CCCcceEEEecCCCcEEECCEEEEEEeccc
Confidence 99984 444333221112356788888877655542 1122244555 5789999999999999955
Q ss_pred C-----------CC---------ceeeEEEEc----cEEEecCCCCCCc--chhhcccCCCEEEEcCcCCCCCCCCCCCH
Q 023686 168 G-----------AG---------YRSLGFRFG----NICYISDVSEIPE--ETYPFLQDCEILIMDALRPDRSSSTHFGL 221 (278)
Q Consensus 168 ~-----------~~---------~~~~g~~i~----~v~~~gD~~~~~~--~~~~~~~~~dili~e~~~~~~~~~~H~~~ 221 (278)
. .. ..++||+++ +++|+||+.+.+. +..+.. ++|++++...........|+++
T Consensus 185 ~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~~~-~iDvall~iG~~p~~~~~hm~p 263 (355)
T PRK11709 185 RTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGNDH-QIDVALGSYGENPRGITDKMTS 263 (355)
T ss_pred cccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHhcC-CCCEEEecCCCCCCCCcCCCCH
Confidence 2 11 136899996 9999999988642 122222 5899998665422234579999
Q ss_pred HHHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhh
Q 023686 222 PRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLM 258 (278)
Q Consensus 222 ~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~ 258 (278)
.+++++++.+++++++++|+..........+++.+..
T Consensus 264 ~ea~~~a~~l~ak~vIpiH~dtf~~~~~dp~~~~~~~ 300 (355)
T PRK11709 264 IDILRMAESLNAKVVIPVHHDIWSNFQADPQEILVLW 300 (355)
T ss_pred HHHHHHHHHcCCCEEEEEChhhccccccCHHHHHHHH
Confidence 9999999999999999999877654433344444444
No 18
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.82 E-value=3.8e-21 Score=174.90 Aligned_cols=232 Identities=22% Similarity=0.255 Sum_probs=160.6
Q ss_pred CCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCc----CCCCCcCEEEeecCChhhhCChHHHHhhhc---c-
Q 023686 33 NKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPA----YGIRTIDAVIITHSHADAIGGLDDLRDWTN---N- 104 (278)
Q Consensus 33 ~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~----~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~---~- 104 (278)
|...|+.+|++|+. .....||+|||.+..-++.+.... .-+.++++|+|||.|.||..|+.-+++.-. .
T Consensus 455 PskyRNVSS~lv~i---~~~~~IlLDCGEgTlgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~ 531 (746)
T KOG2121|consen 455 PSKYRNVSSILVRI---DSDDSILLDCGEGTLGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQARTKLLKG 531 (746)
T ss_pred CCcccceEEEEEec---cCCccEEeecCCchHHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHHHHHhccc
Confidence 67789999999996 345579999999977777664321 114789999999999999999999887532 1
Q ss_pred -CCCCccEEeccccHHHHHhcccc--ccccc-c-cc-CCCCccceee-eecc---CC-ceeecceEEEEEEecCCCCcee
Q 023686 105 -VQRHIPIYVAMRDFEVMKKTHYY--LVDTS-G-II-PGAAVSELQF-NIID---EE-PFTVQDLKITPLPVWHGAGYRS 173 (278)
Q Consensus 105 -~~~~~~v~~~~~~~~~l~~~~~~--~~~~~-~-~~-~~~~~~~~~~-~~~~---~~-~~~~g~~~i~~~~~~H~~~~~~ 173 (278)
...++-|.+++....+++.+..- ..... . +. ++..+..... ...+ .. --+.+...|...++.|.+ .+
T Consensus 532 ~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~~~l~~i~tc~viHCp--~s 609 (746)
T KOG2121|consen 532 VENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRELGLESIQTCPVIHCP--QS 609 (746)
T ss_pred cccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHhcCceeEEecCcEecC--hh
Confidence 22346677788877777765311 10000 0 00 1111110000 0001 11 123466789999999998 78
Q ss_pred eEEEEc-----cEEEecCCCCCCcchhhcccCCCEEEEcCcCCCC-----CCCCCCCHHHHHHHHHHhCCCeEEEEeecc
Q 023686 174 LGFRFG-----NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMH 243 (278)
Q Consensus 174 ~g~~i~-----~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~-----~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~ 243 (278)
+|..+. +++|+||+.+ .+.+.+..+++++||+|+++-+. ...+|++..||+...+..++++++++|++.
T Consensus 610 yg~~i~~~~~~Ki~YSGDTrP-~~~~v~~g~datlLIHEAT~ED~l~EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQ 688 (746)
T KOG2121|consen 610 YGCSITHGSGWKIVYSGDTRP-CEDLVKAGKDATLLIHEATLEDDLEEEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQ 688 (746)
T ss_pred hceeEecccceEEEEcCCCCC-chhHhhhccCCceEEeehhhchhHHHHHHHhCCCCHHHHHHHHHhccchhhhhhhhhc
Confidence 888886 8999999998 56688889999999999998764 357899999999999999999999999999
Q ss_pred CCChhhHHHHHHHhhhhCCCceEEeecCeEEee
Q 023686 244 LMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 276 (278)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i~~ 276 (278)
+|..-.... ...-.++-+++|.|++.+
T Consensus 689 RY~K~pl~~------d~~~~~~~~afd~m~v~~ 715 (746)
T KOG2121|consen 689 RYPKVPLPS------DGEMDPVCVAFDKMAVSV 715 (746)
T ss_pred ccCCCCCCC------ccccchHHHhhhcceeec
Confidence 887532110 001113556777777754
No 19
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.80 E-value=2.5e-18 Score=160.80 Aligned_cols=233 Identities=21% Similarity=0.248 Sum_probs=137.8
Q ss_pred CCCCcccceeEEEEccCCCCCceEEEecCcchHH---HHhhhCC--cCCCCCcCEEEeecCChhhhCChHHHHhhhccCC
Q 023686 32 GNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYH---SALRWFP--AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQ 106 (278)
Q Consensus 32 ~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~---~~~~~l~--~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~ 106 (278)
|+..+.|++|++|+ .++..+|||||..... ...+.+. ...+.+||+|||||+|.||+|+++.+.+..
T Consensus 181 Gg~~eVG~Sc~Ll~----~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g---- 252 (630)
T TIGR03675 181 GGFREVGRSALLLS----TPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYG---- 252 (630)
T ss_pred ecCCccCCCEEEEE----ECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhC----
Confidence 56677899999999 4678999999976421 1122222 233578999999999999999999998642
Q ss_pred CCccEEeccccHHHHHhcccccccc---c---cccCCCCccc--eeeeec-cCCceee-cceEEEEEEecCCCCceeeEE
Q 023686 107 RHIPIYVAMRDFEVMKKTHYYLVDT---S---GIIPGAAVSE--LQFNII-DEEPFTV-QDLKITPLPVWHGAGYRSLGF 176 (278)
Q Consensus 107 ~~~~v~~~~~~~~~l~~~~~~~~~~---~---~~~~~~~~~~--~~~~~~-~~~~~~~-g~~~i~~~~~~H~~~~~~~g~ 176 (278)
.+.+||+++.+.+.+.......... . ..+....+.. ..+..+ .++++++ ++++++++++.|..+...+.+
T Consensus 253 ~~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~ 332 (630)
T TIGR03675 253 YDGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAIAHL 332 (630)
T ss_pred CCCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceEEEE
Confidence 3468999998776553221111000 0 0000000110 123344 3567777 589999999999986444555
Q ss_pred EEc----cEEEecCCCCCCcchhh----cccCCCEEEEcCcCCCCCCCCCCCHHHH----HHHHHH-hCCC-eEEEEeec
Q 023686 177 RFG----NICYISDVSEIPEETYP----FLQDCEILIMDALRPDRSSSTHFGLPRA----LEEVRK-IQPK-RTLFIGMM 242 (278)
Q Consensus 177 ~i~----~v~~~gD~~~~~~~~~~----~~~~~dili~e~~~~~~~~~~H~~~~~~----~~~~~~-l~~~-~~v~~h~~ 242 (278)
.+. +++|+||+......+++ ...++|++++|++|.... ..|....+. .+.+++ +... ++++. ..
T Consensus 333 ~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~-~~~~~r~~~e~~l~~~I~~tl~~gG~VLIP-~f 410 (630)
T TIGR03675 333 HIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRD-DYQPSREEAEKELIKVVNETIKRGGKVLIP-VF 410 (630)
T ss_pred EECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCC-CCCCCHHHHHHHHHHHHHHHHhCCCEEEEE-ec
Confidence 553 79999999875543332 234699999999997643 124444443 334443 2223 33333 33
Q ss_pred cCCChhhHHHHHHHhhhhCCC-ceEEeecCeEE
Q 023686 243 HLMDHEKVNEELLKLMETEGL-DVQLSYDGLRV 274 (278)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~g~-~v~~~~dg~~i 274 (278)
.....++....+.+..++-.+ ++-+..|||..
T Consensus 411 avGR~QEll~~L~~~~~~g~lp~~pIy~dg~~~ 443 (630)
T TIGR03675 411 AVGRAQEVMLVLEEAMRKGLIPEVPVYLDGMIW 443 (630)
T ss_pred hhHHHHHHHHHHHHHHHhCCCCCCcEEEEchHH
Confidence 344545444444444432211 23344466543
No 20
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.77 E-value=8.9e-18 Score=134.45 Aligned_cols=142 Identities=24% Similarity=0.254 Sum_probs=99.5
Q ss_pred cccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEecc
Q 023686 36 RRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 115 (278)
Q Consensus 36 ~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~ 115 (278)
.++++|++|+ .+++.+|||||.+......+.+++.+..+|++|++||.|.||++|++.+.+. ++.++|+++
T Consensus 3 ~~~~~~~li~----~~~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-----~~~~i~~~~ 73 (183)
T smart00849 3 GVGVNSYLVE----GDGGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-----PGAPVYAPE 73 (183)
T ss_pred ccceeEEEEE----eCCceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-----CCCcEEEch
Confidence 5788999999 4688999999976443443335555678999999999999999999998875 467899999
Q ss_pred ccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceEEEEEEe-cCCCCceeeEEEEc--cEEEecCCCCCC
Q 023686 116 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPV-WHGAGYRSLGFRFG--NICYISDVSEIP 191 (278)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~-~H~~~~~~~g~~i~--~v~~~gD~~~~~ 191 (278)
...+.+............. ......+..+ +++.+.+++.+++.+++ .|++ .+++|.+. +++|+||+....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~vl~~gD~~~~~ 147 (183)
T smart00849 74 GTAELLKDLLKLGGALGAE----APPPPPDRTLKDGEELDLGGLELEVIHTPGHTP--GSIVLYLPEGKILFTGDLLFSG 147 (183)
T ss_pred hhhHHHhccchhccccCcC----CCCCccceecCCCCEEEeCCceEEEEECCCCCC--CcEEEEECCCCEEEECCeeecc
Confidence 8888776432210000000 0011123333 56888998888888777 3555 56778887 799999997654
Q ss_pred c
Q 023686 192 E 192 (278)
Q Consensus 192 ~ 192 (278)
+
T Consensus 148 ~ 148 (183)
T smart00849 148 G 148 (183)
T ss_pred C
Confidence 4
No 21
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.74 E-value=5.4e-17 Score=148.23 Aligned_cols=214 Identities=18% Similarity=0.218 Sum_probs=143.7
Q ss_pred CCCCCcccceeEEEEccCCCCCceEEEecCcchHHH-------H---hhhCCcCCCCCcCEEEeecCChhhhCChHHHHh
Q 023686 31 PGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHS-------A---LRWFPAYGIRTIDAVIITHSHADAIGGLDDLRD 100 (278)
Q Consensus 31 ~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~-------~---~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~ 100 (278)
-||.++.|.+++++++ ++..+++|||..+... + ..++.+. ..+|++|||||+|.||+|+++++..
T Consensus 14 lGG~~EiGkN~~vve~----~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n-~~kvkgI~lTHgHeDHIGaip~ll~ 88 (555)
T COG0595 14 LGGVGEIGKNMYVVEY----GDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEEN-KDKVKGIFLTHGHEDHIGALPYLLK 88 (555)
T ss_pred ecChhhhccceEEEEE----CCcEEEEECccccCccccccccEEecChHHhhhc-cccceEEEecCCchhhccchHHHHh
Confidence 4788899999999996 6799999999754322 0 0112222 2589999999999999999999998
Q ss_pred hhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceEEEEEEecCCCCceeeEEEEc
Q 023686 101 WTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVWHGAGYRSLGFRFG 179 (278)
Q Consensus 101 ~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~H~~~~~~~g~~i~ 179 (278)
.. ..++||+++-+...++.+....-. .....++.++ +++.++++++.|+++++.|+. ..++|+.+.
T Consensus 89 ~~----~~~piy~s~lt~~Li~~k~~~~~~--------~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSI-Pds~g~~i~ 155 (555)
T COG0595 89 QV----LFAPIYASPLTAALIKEKLKEHGL--------FKNENELHEVKPGSEIKFGSFEVEFFPVTHSI-PDSLGIVIK 155 (555)
T ss_pred cC----CcCceecCHhhHHHHHHHHHHhcc--------ccccCceEEeCCCCeEEeCcEEEEEEeecccC-ccceEEEEE
Confidence 64 248999999999888776431100 0111245555 567899999999999999998 479999997
Q ss_pred ----cEEEecCCCCCCc----------chhhccc-CCCEEEEcCcCCCCCCCCCCCHH-----HHHHHHHHhCCCeEEEE
Q 023686 180 ----NICYISDVSEIPE----------ETYPFLQ-DCEILIMDALRPDRSSSTHFGLP-----RALEEVRKIQPKRTLFI 239 (278)
Q Consensus 180 ----~v~~~gD~~~~~~----------~~~~~~~-~~dili~e~~~~~~~~~~H~~~~-----~~~~~~~~l~~~~~v~~ 239 (278)
.++||||+..... .+.+..+ +...|++|++....+ +....+ .+.+.++..+-+.++-+
T Consensus 156 Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~~p--g~t~SE~~v~~~l~~i~~~a~grVIv~t 233 (555)
T COG0595 156 TPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAENP--GFTPSESEVGENLEDIIRNAKGRVIVTT 233 (555)
T ss_pred CCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccCCC--CCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 7999999843221 1122223 489999999986533 222222 23334444443333332
Q ss_pred eeccCCChhhHHHHHHHhhhhCCCceEEe
Q 023686 240 GMMHLMDHEKVNEELLKLMETEGLDVQLS 268 (278)
Q Consensus 240 h~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 268 (278)
-.++.. ...++.+.|++.|.++.+.
T Consensus 234 faSni~----Ri~~i~~~A~~~gR~vvv~ 258 (555)
T COG0595 234 FASNIE----RIQTIIDAAEKLGRKVVVT 258 (555)
T ss_pred chhhHH----HHHHHHHHHHHcCCeEEEE
Confidence 222222 2567778888888777654
No 22
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.73 E-value=6.7e-17 Score=141.60 Aligned_cols=235 Identities=21% Similarity=0.251 Sum_probs=146.9
Q ss_pred CCCCcccceeEEEEccCCCCCceEEEecCcchHH---HHhhhCC--cCCCCCcCEEEeecCChhhhCChHHHHhhhccCC
Q 023686 32 GNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYH---SALRWFP--AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQ 106 (278)
Q Consensus 32 ~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~---~~~~~l~--~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~ 106 (278)
|+..+.|.||++++ +.+..+|+|||..... ...+++. +.....+|+|+|||+|.||+|=+|.|.++.
T Consensus 187 Gg~~EVGRSa~lv~----T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~LfkYg---- 258 (637)
T COG1782 187 GGFREVGRSALLVS----TPESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLLFKYG---- 258 (637)
T ss_pred ccchhccceeEEEe----cCCceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhhhhcC----
Confidence 67788999999999 6789999999976322 2333322 233347999999999999999999998864
Q ss_pred CCccEEeccccHHHHH---hccccccccccccC---CCCccce--eeeecc-CCceee-cceEEEEEEecCCCCceeeEE
Q 023686 107 RHIPIYVAMRDFEVMK---KTHYYLVDTSGIIP---GAAVSEL--QFNIID-EEPFTV-QDLKITPLPVWHGAGYRSLGF 176 (278)
Q Consensus 107 ~~~~v~~~~~~~~~l~---~~~~~~~~~~~~~~---~~~~~~~--~~~~~~-~~~~~~-g~~~i~~~~~~H~~~~~~~g~ 176 (278)
.+.+||+++.+...+- .-+-.........+ ...+.+. .-..++ ++.-++ .++++++..+.|--+..+.-+
T Consensus 259 y~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~~Hl 338 (637)
T COG1782 259 YDGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHL 338 (637)
T ss_pred CCCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhcceeeEE
Confidence 3679999998876542 11111111110000 0011110 112222 233333 479999999999887788888
Q ss_pred EEc----cEEEecCCCCCCcchhhc----ccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHh-----C-CCeEEEEeec
Q 023686 177 RFG----NICYISDVSEIPEETYPF----LQDCEILIMDALRPDRSSSTHFGLPRALEEVRKI-----Q-PKRTLFIGMM 242 (278)
Q Consensus 177 ~i~----~v~~~gD~~~~~~~~~~~----~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l-----~-~~~~v~~h~~ 242 (278)
.++ .++|+||+.+..-.+++. +..++.|++|++|.-.. ..+..-.++-+.+.+. . -.++++. ..
T Consensus 339 HIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~-d~q~~R~eaE~~L~~vi~~t~~rGGKvLIP-~f 416 (637)
T COG1782 339 HIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRD-DVQPPREEAEKELIKVINDTLKRGGKVLIP-VF 416 (637)
T ss_pred EecCCceeEEEecccccceeeecChhhccCcchhheeeeeccCCcc-ccCccHHHHHHHHHHHHHHHHhcCCeEEEE-ee
Confidence 887 999999998755444333 34589999999997321 2233444444333322 2 2333332 33
Q ss_pred cCCChhhHHHHHHHhhhhCCCc-eEEeecCeEEee
Q 023686 243 HLMDHEKVNEELLKLMETEGLD-VQLSYDGLRVPV 276 (278)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~-v~~~~dg~~i~~ 276 (278)
.....++..-.+.+..++--++ +-+..|||.++.
T Consensus 417 AVGR~QEvM~VLee~mr~g~ipe~PVYlDGMI~Ea 451 (637)
T COG1782 417 AVGRSQEVMIVLEEAMRKGLIPEVPVYLDGMIWEA 451 (637)
T ss_pred eccccceehhHHHHHHhcCCCCCCceeeeeeeeeh
Confidence 4555555555666666553333 677889999875
No 23
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.70 E-value=1.2e-16 Score=143.17 Aligned_cols=126 Identities=19% Similarity=0.289 Sum_probs=90.2
Q ss_pred cceeEEEEccCCCCCceEEEecCcc-hHHHHhhhCCc-CCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEecc
Q 023686 38 LNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFPA-YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 115 (278)
Q Consensus 38 ~~~s~li~~~~~~~~~~iLiD~G~~-~~~~~~~~l~~-~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~ 115 (278)
..+|++|. + ++.+|||+|.. ....+...+++ .++.+||+|++||.|+||++|++.+.+.+ ++.+||+++
T Consensus 32 ~~NsyLI~----~-~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~----p~a~V~~~~ 102 (394)
T PRK11921 32 SYNSYLIK----D-EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEI----PDTPIYCTK 102 (394)
T ss_pred EEEEEEEe----C-CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHC----CCCEEEECH
Confidence 56788887 2 57899999964 33444444433 35678999999999999999999998764 568899999
Q ss_pred ccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceEEEEEEec--CCCCceeeEEEEc-cEEEecCC
Q 023686 116 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVW--HGAGYRSLGFRFG-NICYISDV 187 (278)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~--H~~~~~~~g~~i~-~v~~~gD~ 187 (278)
...+.+...+.. ...+..+ +++++++|+.++++++++ |+++ ..+.|.-+ +++|+||+
T Consensus 103 ~~~~~l~~~~~~--------------~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~-~~~~y~~~~~vLFsgD~ 163 (394)
T PRK11921 103 NGAKSLKGHYHQ--------------DWNFVVVKTGDRLEIGSNELIFIEAPMLHWPD-SMFTYLTGDNILFSNDA 163 (394)
T ss_pred HHHHHHHHHhCC--------------CCceEEeCCCCEEeeCCeEEEEEeCCCCCCCC-ceEEEEcCCCEEEecCc
Confidence 877766542110 0112334 678999999999988665 8883 33344433 89999997
No 24
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.70 E-value=9.9e-16 Score=137.87 Aligned_cols=180 Identities=22% Similarity=0.220 Sum_probs=119.6
Q ss_pred CCCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcC-CCCCcCEEEeecCChhhhCChHHHHhhhccCCCCc
Q 023686 31 PGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAY-GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHI 109 (278)
Q Consensus 31 ~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~-~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~ 109 (278)
.|...+.+.+|.+++. ++..+|+|||....... +..... ..+++|+++|||+|.||+++++.+.... -+.
T Consensus 6 ~g~~~evg~s~~~l~~----~~~~il~D~G~~~~~~~-~~~p~~~~~~~vDavllTHaHlDH~g~lp~l~~~~----~~~ 76 (427)
T COG1236 6 LGAAREVGRSCVLLET----GGTRILLDCGLFPGDPS-PERPLLPPFPKVDAVLLTHAHLDHIGALPYLVRNG----FEG 76 (427)
T ss_pred ccccCCcCcEEEEEEE----CCceEEEECCCCcCcCC-ccCCCCCCCCCcCEEEeccCchhhhcccHHHHHhc----cCC
Confidence 3556678999999994 56999999998642221 221222 2237999999999999999999998754 136
Q ss_pred cEEeccccHHHHHhcccccccccc-----ccCCCCcc--ceeeeecc-CCceeecceEEEEEEecCCCCceeeEEEEc--
Q 023686 110 PIYVAMRDFEVMKKTHYYLVDTSG-----IIPGAAVS--ELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG-- 179 (278)
Q Consensus 110 ~v~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~-~~~~~~g~~~i~~~~~~H~~~~~~~g~~i~-- 179 (278)
+||+++.+.+.++-.......... .+....+. ....+.++ ++++++++++|+++++.|.+ ++..|.++
T Consensus 77 ~v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~AGHil--Gsa~~~le~~ 154 (427)
T COG1236 77 PVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYNAGHIL--GSAAILLEVD 154 (427)
T ss_pred ceeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEecCCCcc--ceeEEEEEeC
Confidence 899999998877644333222211 01000111 11233353 68999999999999999999 45555554
Q ss_pred --cEEEecCCCCCCcchhhccc--C-CCEEEEcCcCCCCCCCCCCCHHHH
Q 023686 180 --NICYISDVSEIPEETYPFLQ--D-CEILIMDALRPDRSSSTHFGLPRA 224 (278)
Q Consensus 180 --~v~~~gD~~~~~~~~~~~~~--~-~dili~e~~~~~~~~~~H~~~~~~ 224 (278)
+++|+||.......+....+ . +|+|++|++|.. ..|....+.
T Consensus 155 ~~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~EsTYg~---~~~~~r~~~ 201 (427)
T COG1236 155 GGRILYTGDVKRRKDRLLNGAELPPCIDVLIVESTYGD---RLHPNRDEV 201 (427)
T ss_pred CceEEEEeccCCCcCCCCCccccCCCCcEEEEecccCC---ccCCCHHHH
Confidence 89999999865443332221 2 699999999976 334445443
No 25
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.67 E-value=3e-15 Score=127.01 Aligned_cols=210 Identities=20% Similarity=0.239 Sum_probs=140.9
Q ss_pred ccceeEEEEccCCCCCceEEEecCcc-hHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEecc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 115 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~-~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~ 115 (278)
-++.+++|+ .+++.+++|+|.. ....+.++|+..|+.+||.+++||.|.||+||++.+++.+. -..+|+..
T Consensus 52 Gqg~a~li~----~~~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~----v~~~~i~~ 123 (293)
T COG2333 52 GQGLATLIR----SEGKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIK----VPELWIYA 123 (293)
T ss_pred CCCeEEEEe----eCCceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCC----CCcEEEeC
Confidence 466788998 4677999999994 34567899999999999999999999999999999998542 23455444
Q ss_pred ccHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEecC-C---CCceeeEEEEc----cEEEecCC
Q 023686 116 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWH-G---AGYRSLGFRFG----NICYISDV 187 (278)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~H-~---~~~~~~g~~i~----~v~~~gD~ 187 (278)
......... .. ...........++.+.++++.++++...- . .++.|+..++. +++++||.
T Consensus 124 ~~~~~~~~~----~~--------~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~ 191 (293)
T COG2333 124 GSDSTSTFV----LR--------DAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDL 191 (293)
T ss_pred CCCccchhh----hh--------hcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCC
Confidence 322211100 00 00000113346789999999998776542 1 13567777776 99999999
Q ss_pred CCCCcchh-hccc--CCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEeec-cCCChhhHHHHHHHhhhhCCC
Q 023686 188 SEIPEETY-PFLQ--DCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM-HLMDHEKVNEELLKLMETEGL 263 (278)
Q Consensus 188 ~~~~~~~~-~~~~--~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~~-~~~~~~~~~~~~~~~~~~~g~ 263 (278)
+.-.|..+ +... ++|+|......+..+.. .+++++++|+..+++-.. +.++++ ..+..+++++.+.
T Consensus 192 e~~~E~~l~~~~~~l~~dVLkV~HHGS~tSss--------~~Fl~~v~Pk~AliS~G~~N~yghP--h~~Vl~rl~~~~~ 261 (293)
T COG2333 192 EEKGEKLLKKYGPDLRADVLKVGHHGSKTSSS--------LAFLEAVKPKVALISSGRNNRYGHP--HQEVLERLQKRGI 261 (293)
T ss_pred CchhHHHHHhhCCCccceEEEeccCCccccCc--------HHHHHhcCCcEEEEEeeccCCCCCC--cHHHHHHHHhcCC
Confidence 86554322 2111 28888887766655544 889999999999888544 666664 4555666777666
Q ss_pred ceEEeecCeEEee
Q 023686 264 DVQLSYDGLRVPV 276 (278)
Q Consensus 264 ~v~~~~dg~~i~~ 276 (278)
+++.+.-..+|.+
T Consensus 262 ~v~rTd~~G~I~~ 274 (293)
T COG2333 262 KVYRTDQQGAITV 274 (293)
T ss_pred eEEecCCCCeEEE
Confidence 6666555555544
No 26
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.66 E-value=1.8e-15 Score=126.59 Aligned_cols=192 Identities=22% Similarity=0.285 Sum_probs=120.2
Q ss_pred CCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCc------CC-C-CCcCEEEeecCChhhhCChHHHHhhhc
Q 023686 32 GNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPA------YG-I-RTIDAVIITHSHADAIGGLDDLRDWTN 103 (278)
Q Consensus 32 ~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~------~~-~-~~Id~v~iTH~H~DH~~gl~~l~~~~~ 103 (278)
|.....|.||++|. -++++|++|||..+..+-.+.+.. .+ + .-||.|+|||.|.||+|.||++.+..+
T Consensus 10 GAGQdvGrSCilvs----i~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~G 85 (501)
T KOG1136|consen 10 GAGQDVGRSCILVS----IGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVG 85 (501)
T ss_pred cCCcccCceEEEEE----ECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhC
Confidence 45567899999999 578999999997643333332222 22 1 569999999999999999999999865
Q ss_pred cCCCCccEEeccccHHHHHhccccccccccccCCC-Cc------c-ce-eeeecc-CCceeec-ceEEEEEEecCCCCce
Q 023686 104 NVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGA-AV------S-EL-QFNIID-EEPFTVQ-DLKITPLPVWHGAGYR 172 (278)
Q Consensus 104 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~------~-~~-~~~~~~-~~~~~~g-~~~i~~~~~~H~~~~~ 172 (278)
.+.+||.+-.+.+.-.-..+.......-..++ .+ . -+ .++.++ -+++.++ +++|+++.+.|.-+..
T Consensus 86 ---Y~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGAa 162 (501)
T KOG1136|consen 86 ---YDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGAA 162 (501)
T ss_pred ---CCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeeccccccee
Confidence 46789987766543211111110000000111 00 0 00 122222 2556664 7899999999998766
Q ss_pred eeEEEEc--cEEEecCCCCCCcchhhccc----CCCEEEEcCcCCCCCC-CCCCCHHHHHHHHHH
Q 023686 173 SLGFRFG--NICYISDVSEIPEETYPFLQ----DCEILIMDALRPDRSS-STHFGLPRALEEVRK 230 (278)
Q Consensus 173 ~~g~~i~--~v~~~gD~~~~~~~~~~~~~----~~dili~e~~~~~~~~-~~H~~~~~~~~~~~~ 230 (278)
.+..+++ +++|+||.+..++..+-..+ ..|+||.|++|..... .....-.+.++.+-+
T Consensus 163 Mf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiRdskr~rERdFLk~Vhe 227 (501)
T KOG1136|consen 163 MFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRDSKRCRERDFLKKVHE 227 (501)
T ss_pred EEEEEecceeEEEecCccCCcccccchhhhccccCceEEeeccceeeeccccchhHHHHHHHHHH
Confidence 6666666 99999999887776442222 4899999999864322 222223344544444
No 27
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.65 E-value=8.7e-16 Score=140.26 Aligned_cols=127 Identities=22% Similarity=0.372 Sum_probs=89.8
Q ss_pred ccceeEEEEccCCCCCceEEEecCcc-hHHHHhhhCC-cCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEec
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFP-AYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 114 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~-~~~~~~~~l~-~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~ 114 (278)
...+||+|. +++.+|||+|.. ....+.+.+. ..++.+|++|++||.|.||++|++.+.+.+ ++.+||++
T Consensus 33 ~t~NsYLI~-----~~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~----p~a~V~~s 103 (479)
T PRK05452 33 SSYNSYLIR-----EEKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQI----PDTPIYCT 103 (479)
T ss_pred cEEEEEEEE-----CCCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHC----CCCEEEEC
Confidence 356889998 257999999963 3344444443 345678999999999999999999998764 56899999
Q ss_pred cccHHHHHhccccccccccccCCCCccceeeeec-cCCceeec-ceEEEEEEec--CCCCceeeEEEE-c-cEEEecCC
Q 023686 115 MRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQ-DLKITPLPVW--HGAGYRSLGFRF-G-NICYISDV 187 (278)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~i~~~~~~--H~~~~~~~g~~i-~-~v~~~gD~ 187 (278)
+.....+..... .....+..+ +++.+++| +.+++++.++ |++ .++.+.. + +++|+||.
T Consensus 104 ~~~~~~l~~~~~-------------~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~p--gs~~~y~~~~~vLFsgD~ 167 (479)
T PRK05452 104 ANAIDSINGHHH-------------HPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWP--DSMMTYLTGDAVLFSNDA 167 (479)
T ss_pred HHHHHHHHHhhc-------------CCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCC--CceEEEEcCCCEEEeccc
Confidence 988776654211 011234445 67889998 4677777665 887 4444444 4 89999996
No 28
>PRK11539 ComEC family competence protein; Provisional
Probab=99.65 E-value=4.2e-15 Score=143.02 Aligned_cols=196 Identities=18% Similarity=0.193 Sum_probs=135.1
Q ss_pred cceeEEEEccCCCCCceEEEecCcc------hHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccE
Q 023686 38 LNTSILIRYPGPSGRRNILIDAGKF------FYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPI 111 (278)
Q Consensus 38 ~~~s~li~~~~~~~~~~iLiD~G~~------~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v 111 (278)
.+.|++|+ .+++++|||+|.. ..+.+.++|+..++ ++|++++||.|.||++|+..+.+.+ +..++
T Consensus 510 qG~a~li~----~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~----~~~~i 580 (755)
T PRK11539 510 HGLAVVIE----RNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHAW----PMAWI 580 (755)
T ss_pred CceEEEEE----ECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHhC----Cccee
Confidence 55788888 4679999999963 23557788888999 6999999999999999999998875 34567
Q ss_pred EeccccHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEec-CC---CCceeeEEEEc----cEEE
Q 023686 112 YVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HG---AGYRSLGFRFG----NICY 183 (278)
Q Consensus 112 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-H~---~~~~~~g~~i~----~v~~ 183 (278)
+.+.... . . ....+++.+++++++++.+..+ |. .|+.|+.++++ ++++
T Consensus 581 ~~~~~~~----~---------------~-----~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~Ll 636 (755)
T PRK11539 581 RSPLNWA----N---------------H-----LPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILL 636 (755)
T ss_pred eccCccc----C---------------c-----ccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEE
Confidence 7654110 0 0 0123567888899988877443 32 23567888886 8999
Q ss_pred ecCCCCCCcc-hhhcc---cCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEee-ccCCChhhHHHHHHHhh
Q 023686 184 ISDVSEIPEE-TYPFL---QDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGM-MHLMDHEKVNEELLKLM 258 (278)
Q Consensus 184 ~gD~~~~~~~-~~~~~---~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~-~~~~~~~~~~~~~~~~~ 258 (278)
+||.+...|+ +.+.. -++|++......++.+.. .+++++.+|+.++++-. .+.++++ .++..+++
T Consensus 637 tGDi~~~~E~~Ll~~~~~~l~~dvL~vpHHGS~tSss--------~~fl~~v~P~~aiiS~g~~NryghP--~~~v~~rl 706 (755)
T PRK11539 637 TGDLEAQAEQKLLSRYWQQLAATLLQVPHHGSNTSSS--------LPFIRAVNGKVALASASRYNAWRLP--SVKVKQRY 706 (755)
T ss_pred EeCCChHHHHHHHhcCccCcCCCEEEeCCCCCCCCCh--------HHHHHhcCCCEEEEeCCCCCCCCCC--CHHHHHHH
Confidence 9998764443 22211 148888886665544433 78999999999998754 3455554 45666778
Q ss_pred hhCCCceEEeecCeEEee
Q 023686 259 ETEGLDVQLSYDGLRVPV 276 (278)
Q Consensus 259 ~~~g~~v~~~~dg~~i~~ 276 (278)
++.|++++-+.....|.+
T Consensus 707 ~~~g~~~~~T~~~G~I~~ 724 (755)
T PRK11539 707 QQQGYQWRDTPHSGQLSV 724 (755)
T ss_pred HHcCCeEEEcCCCCcEEE
Confidence 877776665554444443
No 29
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.64 E-value=6.2e-15 Score=140.16 Aligned_cols=193 Identities=17% Similarity=0.228 Sum_probs=133.5
Q ss_pred ccceeEEEEccCCCCCceEEEecCcch------HHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCcc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFF------YHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIP 110 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~------~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~ 110 (278)
-.+.|++|+ .+++++|||+|... ...+.++|+..|++ ||++++||.|.||++|+..+.+.+ +..+
T Consensus 448 GqGdaili~----~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~----~v~~ 518 (662)
T TIGR00361 448 GQGLAMFIG----ANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKHH----PVKR 518 (662)
T ss_pred CCceEEEEE----ECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhC----CccE
Confidence 356789998 45689999999742 24477888899997 999999999999999999998875 3345
Q ss_pred EEeccccHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEecC----CCCceeeEEEEc----cEE
Q 023686 111 IYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWH----GAGYRSLGFRFG----NIC 182 (278)
Q Consensus 111 v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~H----~~~~~~~g~~i~----~v~ 182 (278)
++.+.... .. .. .......++.+++++++++.+.... ..|+.|+.++++ +++
T Consensus 519 i~~~~~~~----~~--------------~~--~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L 578 (662)
T TIGR00361 519 LVIPKGFV----EE--------------GV--AIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWL 578 (662)
T ss_pred EEeccchh----hC--------------CC--ceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEE
Confidence 77665410 00 00 0012336778888999988775432 124567888886 899
Q ss_pred EecCCCCCCcchh-hc--ccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEee-ccCCChhhHHHHHHHhh
Q 023686 183 YISDVSEIPEETY-PF--LQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGM-MHLMDHEKVNEELLKLM 258 (278)
Q Consensus 183 ~~gD~~~~~~~~~-~~--~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~-~~~~~~~~~~~~~~~~~ 258 (278)
|+||.+...|+.. +. .-++|++......++.+.. .+++++++|+.++++-. .+.++++ .++..+++
T Consensus 579 ~tGD~~~~~E~~l~~~~~~l~~dvLk~~HHGS~~Sss--------~~fl~~v~P~~aiiS~g~~N~yghP--~~~vl~rl 648 (662)
T TIGR00361 579 LTGDLEAEGEQEVMRVFPNIKADVLQVGHHGSKTSTS--------EELIQQVQPKVAIISAGRNNRWHHP--HQKVLQRL 648 (662)
T ss_pred EecCCCHHHHHHHHhcccCcCccEEEeCCCCCCCCCh--------HHHHHhcCCCEEEEECCCCCCCCCC--hHHHHHHH
Confidence 9999987544322 21 1247888886665543332 68899999999998754 3455554 56777888
Q ss_pred hhCCCceEEe
Q 023686 259 ETEGLDVQLS 268 (278)
Q Consensus 259 ~~~g~~v~~~ 268 (278)
++.|.+++-+
T Consensus 649 ~~~g~~~~~T 658 (662)
T TIGR00361 649 QRHSIRVLRT 658 (662)
T ss_pred HHCCCeEEec
Confidence 8888776554
No 30
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.64 E-value=6.3e-15 Score=123.98 Aligned_cols=119 Identities=22% Similarity=0.372 Sum_probs=88.8
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 116 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~ 116 (278)
+.|.+|+|.. .+++.+|||+|.. ..+.+.+++.+. ++++|++||.|+||++|+..+.+.+ +++||+++.
T Consensus 8 ~dN~~yli~~---~~~~~ilID~g~~--~~i~~~l~~~g~-~l~~Il~TH~H~DHigG~~~l~~~~-----~~~V~~~~~ 76 (248)
T TIGR03413 8 SDNYIWLLHD---PDGQAAVVDPGEA--EPVLDALEARGL-TLTAILLTHHHHDHVGGVAELLEAF-----PAPVYGPAE 76 (248)
T ss_pred ccEEEEEEEc---CCCCEEEEcCCCh--HHHHHHHHHcCC-eeeEEEeCCCCccccCCHHHHHHHC-----CCeEEeccc
Confidence 5678888873 2258999999975 345556666665 7899999999999999999998765 378999875
Q ss_pred cHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEec-CCCCceeeEEEEc--cEEEecCCCC
Q 023686 117 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 189 (278)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-H~~~~~~~g~~i~--~v~~~gD~~~ 189 (278)
. . . + .......+++.+++++..+++++++ |++ .+++|.+. +++|+||+-.
T Consensus 77 ~-----~-~----------~-----~~~~~v~~g~~~~~g~~~i~v~~tpGHT~--g~i~~~~~~~~~lftGDtl~ 129 (248)
T TIGR03413 77 E-----R-I----------P-----GITHPVKDGDTVTLGGLEFEVLAVPGHTL--GHIAYYLPDSPALFCGDTLF 129 (248)
T ss_pred c-----c-C----------C-----CCcEEeCCCCEEEECCEEEEEEECCCCCc--ccEEEEECCCCEEEEcCccc
Confidence 3 0 0 0 0011233678899999999988877 777 66888875 8999999854
No 31
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.61 E-value=3.8e-14 Score=115.81 Aligned_cols=79 Identities=30% Similarity=0.400 Sum_probs=61.1
Q ss_pred CCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCc--CCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCcc
Q 023686 33 NKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPA--YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIP 110 (278)
Q Consensus 33 ~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~--~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~ 110 (278)
+...+.+-|++|+ .++..||||+|+.. ..+..+++. .++.+||+|+|||.|+||++||.++.+... +.++
T Consensus 16 ~f~a~hGfS~LVE----~~~~riLFDtG~~~-~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~---~~i~ 87 (259)
T COG1237 16 GFRAEHGFSALVE----DEGTRILFDTGTDS-DVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENN---PGIP 87 (259)
T ss_pred cccccCceEEEEE----cCCeEEEEeCCCCc-HHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccC---CCce
Confidence 3455778899999 56799999999653 223333344 445799999999999999999999877543 6788
Q ss_pred EEeccccHH
Q 023686 111 IYVAMRDFE 119 (278)
Q Consensus 111 v~~~~~~~~ 119 (278)
||+++....
T Consensus 88 v~ahp~af~ 96 (259)
T COG1237 88 VYAHPDAFK 96 (259)
T ss_pred EEeChHHHh
Confidence 999998776
No 32
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.61 E-value=5e-14 Score=119.42 Aligned_cols=217 Identities=18% Similarity=0.182 Sum_probs=136.8
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhh---hCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEe
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALR---WFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYV 113 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~---~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~ 113 (278)
-|++|++|+ .++++||||+..+....... ......++.+|+|+|||.|.||++.-.......+ +...+++
T Consensus 12 lGha~~lie----~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~---~~~~~~~ 84 (258)
T COG2220 12 LGHAAFLIE----TGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTN---KAPVVVV 84 (258)
T ss_pred ecceEEEEE----ECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcC---CCcEEEe
Confidence 489999999 46799999998752111111 0112235689999999999999964333322211 2344555
Q ss_pred ccccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceEEEEEEecCCCC-----------ceeeEEEEc--
Q 023686 114 AMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVWHGAG-----------YRSLGFRFG-- 179 (278)
Q Consensus 114 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~H~~~-----------~~~~g~~i~-- 179 (278)
+......+.++ .....++... .++.+++++.+++++++.|.+. ....+|++.
T Consensus 85 p~~~~~~~~~~--------------g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~ 150 (258)
T COG2220 85 PLGAGDLLIRD--------------GVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETP 150 (258)
T ss_pred HHHHHHHHHhc--------------CCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeC
Confidence 55543333222 2222233444 3578888999998888887542 235678886
Q ss_pred --cEEEecCCCCCCcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEeec-cCCChhhHHHHHHH
Q 023686 180 --NICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM-HLMDHEKVNEELLK 256 (278)
Q Consensus 180 --~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~~-~~~~~~~~~~~~~~ 256 (278)
++++.||+.+.........-.+|+++++..... ...++...++.+..+.+++++++++|+. .........+.+..
T Consensus 151 g~~iyh~GDt~~~~~~~~~~~~~~DvallPig~~~--~~~~~~~~~~~~~~~~l~~~~viP~Hy~~~~~~~~~~~~~~~~ 228 (258)
T COG2220 151 GGRVYHAGDTGYLFLIIEELDGPVDVALLPIGGYP--NATMMPPEAAVAAAEVLRPKRVIPMHYGPTFPPIEEDPEEFLH 228 (258)
T ss_pred CceEEeccCccHHHHhhhhhcCCccEEEeccCCCC--CCccCCHHHHHHHHHHhcCCeEEeecccccCccccCCHHHHHH
Confidence 899999998722222222223799998876432 4667888999999999999999999987 43333333455555
Q ss_pred hhhhCC--CceEEeecCeEEee
Q 023686 257 LMETEG--LDVQLSYDGLRVPV 276 (278)
Q Consensus 257 ~~~~~g--~~v~~~~dg~~i~~ 276 (278)
..+..+ ..+.+...|..+.+
T Consensus 229 ~~~~~~~~~~~~~~~~g~~~~~ 250 (258)
T COG2220 229 ALDAGGEPVKVFILELGESVEL 250 (258)
T ss_pred hhhhcCCCceeeEecCCceEEc
Confidence 554433 35666666666654
No 33
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.60 E-value=6.9e-15 Score=127.74 Aligned_cols=128 Identities=20% Similarity=0.251 Sum_probs=99.3
Q ss_pred ccceeEEEEccCCCCCceEEEecCcc-hHHHHhhhCCc-CCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEec
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFPA-YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 114 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~-~~~~~~~~l~~-~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~ 114 (278)
-+.+||||. +++.+|||++-. +...+...+++ .++++||+|+++|..+||.+.++.+++.. |+++|+++
T Consensus 34 ttyNSYLI~-----~~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~----p~a~ii~s 104 (388)
T COG0426 34 TTYNSYLIV-----GDKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELA----PNAKIICS 104 (388)
T ss_pred ceeeeEEEe-----CCcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhC----CCCEEEee
Confidence 456788998 579999999864 55555555544 46788999999999999999999999875 68999999
Q ss_pred cccHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceEEEEEEec--CCCCceeeEEEEc-cEEEecCCC
Q 023686 115 MRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVW--HGAGYRSLGFRFG-NICYISDVS 188 (278)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~--H~~~~~~~g~~i~-~v~~~gD~~ 188 (278)
+...+.|+..+.... .+.++ .|+++++||.++++++++ |+|+ ..+-|..+ +++||+|..
T Consensus 105 ~~~~~~L~~~~~~~~--------------~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd-~m~TYd~~~kILFS~D~f 167 (388)
T COG0426 105 KLAARFLKGFYHDPE--------------WFKIVKTGDTLDLGGHTLKFIPAPFLHWPD-TMFTYDPEDKILFSCDAF 167 (388)
T ss_pred HHHHHHHHHhcCCcc--------------ceeecCCCCEeccCCcEEEEEeCCCCCCCC-ceeEeecCCcEEEccccc
Confidence 999888887542211 13445 678999999888777764 8884 56667666 999999963
No 34
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.59 E-value=4.1e-14 Score=119.19 Aligned_cols=120 Identities=18% Similarity=0.220 Sum_probs=86.0
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 116 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~ 116 (278)
+.|.++++.. .+++.+|||+|.. ..+.+.+++.+. ++++|++||.|.||++|+..+.+.+ +..+||++..
T Consensus 10 ~dNy~~li~~---~~~~~ilIDpg~~--~~vl~~l~~~g~-~l~~IllTH~H~DHigG~~~l~~~~----~~~~V~~~~~ 79 (251)
T PRK10241 10 DDNYIWVLND---EAGRCLIVDPGEA--EPVLNAIAENNW-QPEAIFLTHHHHDHVGGVKELVEKF----PQIVVYGPQE 79 (251)
T ss_pred cceEEEEEEc---CCCcEEEECCCCh--HHHHHHHHHcCC-ccCEEEeCCCCchhhccHHHHHHHC----CCCEEEeccc
Confidence 4567777763 3468999999975 445566666665 6899999999999999999998875 4578998764
Q ss_pred cHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEec-CCCCceeeEEEEccEEEecCCCC
Q 023686 117 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFGNICYISDVSE 189 (278)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-H~~~~~~~g~~i~~v~~~gD~~~ 189 (278)
.... + ......+++.+.+++.+++++.++ |++ .++.|....++|+||+-.
T Consensus 80 ~~~~----------------~-----~~~~v~~g~~i~ig~~~~~vi~tPGHT~--ghi~~~~~~~lFtGDtlf 130 (251)
T PRK10241 80 TQDK----------------G-----TTQVVKDGETAFVLGHEFSVFATPGHTL--GHICYFSKPYLFCGDTLF 130 (251)
T ss_pred cccc----------------C-----CceEeCCCCEEEeCCcEEEEEEcCCCCc--cceeeecCCcEEEcCeec
Confidence 3110 0 011122577888988888877765 887 556666568899999754
No 35
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.58 E-value=1.5e-14 Score=122.11 Aligned_cols=121 Identities=18% Similarity=0.214 Sum_probs=83.7
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 116 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~ 116 (278)
+.|.+|+|... .++.+++||+|. ...+.+.+++.+. +|++|++||.|+||++|+..+.+.+ ++++||++..
T Consensus 10 ~dNy~Yli~d~--~~~~~vlIDp~~--~~~il~~l~~~g~-~l~~Il~TH~H~DH~gG~~~l~~~~----~~~~V~~~~~ 80 (258)
T PLN02469 10 EDNYAYLIIDE--STKDAAVVDPVD--PEKVLQAAHEHGA-KIKLVLTTHHHWDHAGGNEKIKKLV----PGIKVYGGSL 80 (258)
T ss_pred cceEEEEEEeC--CCCeEEEECCCC--hHHHHHHHHHcCC-cccEEEecCCCCccccCHHHHHHHC----CCCEEEEech
Confidence 45668888742 235799999995 3456666666664 8999999999999999999998865 3578998753
Q ss_pred cHHHHHhccccccccccccCCCCccceeeeeccCCceeecc-eEEEEEEec-CCCCceeeEEEEc------cEEEecCCC
Q 023686 117 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQD-LKITPLPVW-HGAGYRSLGFRFG------NICYISDVS 188 (278)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~i~~~~~~-H~~~~~~~g~~i~------~v~~~gD~~ 188 (278)
.. . + . ......+++.+.+|+ ..++++.++ |++ .++.|.+. .++|+||+-
T Consensus 81 ~~------~----------~--~---~~~~v~~gd~i~lg~~~~~~vi~tPGHT~--ghi~~~~~~~~~~~~~lFtGDtL 137 (258)
T PLN02469 81 DN------V----------K--G---CTHPVENGDKLSLGKDVNILALHTPCHTK--GHISYYVTGKEGEDPAVFTGDTL 137 (258)
T ss_pred hc------C----------C--C---CCeEeCCCCEEEECCceEEEEEECCCCCC--CCEEEEeccCCCCCCEEEecCcc
Confidence 20 0 0 0 011233678888885 556555543 777 56777664 499999974
Q ss_pred C
Q 023686 189 E 189 (278)
Q Consensus 189 ~ 189 (278)
.
T Consensus 138 f 138 (258)
T PLN02469 138 F 138 (258)
T ss_pred c
Confidence 3
No 36
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.57 E-value=1.6e-14 Score=114.06 Aligned_cols=148 Identities=23% Similarity=0.354 Sum_probs=94.0
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 116 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~ 116 (278)
-|++|++|+ .++++||+||.... ... .....++|+|++||.|.||+.- ..+.. .
T Consensus 5 lgha~~~ie----~~g~~iliDP~~~~-~~~-----~~~~~~~D~IlisH~H~DH~~~-~~l~~--------~------- 58 (163)
T PF13483_consen 5 LGHASFLIE----TGGKRILIDPWFSS-VGY-----APPPPKADAILISHSHPDHFDP-ETLKR--------L------- 58 (163)
T ss_dssp EETTEEEEE----ETTEEEEES--TTT---T------TSS-B-SEEEESSSSTTT-CC-CCCCC--------H-------
T ss_pred EEeeEEEEE----ECCEEEEECCCCCc-cCc-----ccccCCCCEEEECCCccccCCh-hHhhh--------c-------
Confidence 478999999 56899999999641 000 1113689999999999999964 22211 0
Q ss_pred cHHHHHhccccccccccccCCCCccceeeeec-cCCceeecceEEEEEEecCCC-----CceeeEEEEc----cEEEecC
Q 023686 117 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVWHGA-----GYRSLGFRFG----NICYISD 186 (278)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~i~~~~~~H~~-----~~~~~g~~i~----~v~~~gD 186 (278)
.. +..++ .++.+++++++|+.++..|.. .....+|.++ ++++.||
T Consensus 59 -----~~--------------------~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd 113 (163)
T PF13483_consen 59 -----DR--------------------DIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGD 113 (163)
T ss_dssp -----HT--------------------SSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT
T ss_pred -----cc--------------------ccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECC
Confidence 00 11222 456788899999999999852 1357888887 9999999
Q ss_pred CCCCC-cchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEe
Q 023686 187 VSEIP-EETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 240 (278)
Q Consensus 187 ~~~~~-~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h 240 (278)
+.... ......+.++|++++.... ...+..+++.+++++++|+.++++|
T Consensus 114 ~~~~~~~~~~~~~~~vDvl~~p~~g-----~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 114 TGFPPDDEQLKQLGKVDVLFLPVGG-----PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp --S---HHHHHHH-S-SEEEEE--T-----TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred CccCCCHHHHhcccCCCEEEecCCC-----CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 97543 3344556689999997654 4467899999999999999999988
No 37
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.57 E-value=2.7e-13 Score=117.11 Aligned_cols=239 Identities=18% Similarity=0.260 Sum_probs=145.4
Q ss_pred CCCCCcccceeEEEEccCCCCCceEEEecCcch---HHHHhh-hCCc-C--C------------------CCCcCEEEee
Q 023686 31 PGNKNRRLNTSILIRYPGPSGRRNILIDAGKFF---YHSALR-WFPA-Y--G------------------IRTIDAVIIT 85 (278)
Q Consensus 31 ~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~---~~~~~~-~l~~-~--~------------------~~~Id~v~iT 85 (278)
-|+.++...+++|++.. ..+..+-+|+|... .....+ .+.. . . ...|.+.+||
T Consensus 9 ~GG~~e~nls~~L~~~~--~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylIt 86 (335)
T PF02112_consen 9 GGGPDEGNLSAYLVRSI--GSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLIT 86 (335)
T ss_pred CCCCCCCCcceeeeeec--CcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEec
Confidence 35667888899999964 35789999999742 111111 1100 0 0 1478999999
Q ss_pred cCChhhhCChHHHHhhhccC-CCCccEEeccccHHHHHhccccc---cccccccCCCCccceeeeec-cCCceee-----
Q 023686 86 HSHADAIGGLDDLRDWTNNV-QRHIPIYVAMRDFEVMKKTHYYL---VDTSGIIPGAAVSELQFNII-DEEPFTV----- 155 (278)
Q Consensus 86 H~H~DH~~gl~~l~~~~~~~-~~~~~v~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~----- 155 (278)
|+|.||+.|+-.-....... ..+.+||+.+.+.+.+++...++ .+......+......++..+ .++...+
T Consensus 87 H~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 166 (335)
T PF02112_consen 87 HPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGELIPLNNTTL 166 (335)
T ss_pred CCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccceeecccccc
Confidence 99999999986444333221 13568999999999999764332 22221111111112222222 1111111
Q ss_pred --------cceEEEEEEecCCCCc----eeeEEEEc------cEEEecCCCCCC-------cchhhcc------cCCCEE
Q 023686 156 --------QDLKITPLPVWHGAGY----RSLGFRFG------NICYISDVSEIP-------EETYPFL------QDCEIL 204 (278)
Q Consensus 156 --------g~~~i~~~~~~H~~~~----~~~g~~i~------~v~~~gD~~~~~-------~~~~~~~------~~~dil 204 (278)
....+++++..|.... .|.+|.+. .++|.||+++.. ..+++.+ +...-+
T Consensus 167 s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~I~~~~LkaI 246 (335)
T PF02112_consen 167 SVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPKIASGKLKAI 246 (335)
T ss_pred ccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhhccccccCEE
Confidence 1356777999998632 37899996 799999998642 1233322 236778
Q ss_pred EEcCcCCCC----CCCCCCCHHHHHHHHHHhCC-----------CeEEEEeeccCCChh-----hHHHHHHHhhhh--CC
Q 023686 205 IMDALRPDR----SSSTHFGLPRALEEVRKIQP-----------KRTLFIGMMHLMDHE-----KVNEELLKLMET--EG 262 (278)
Q Consensus 205 i~e~~~~~~----~~~~H~~~~~~~~~~~~l~~-----------~~~v~~h~~~~~~~~-----~~~~~~~~~~~~--~g 262 (278)
++||.|++. .-.+|+++..+++.++.+.. =++|++|........ ....+++++.++ .|
T Consensus 247 ~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~~~~~dpr~~Il~il~qL~~~n~LG 326 (335)
T PF02112_consen 247 FIECSYPNSQPDSQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSLNDGPDPRDVILEILRQLAEENNLG 326 (335)
T ss_pred EEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCcccCCCChHHHHHHHHHHHHhccCCc
Confidence 899988753 34789999998888877642 157899988766422 123445555554 45
Q ss_pred CceEEeecC
Q 023686 263 LDVQLSYDG 271 (278)
Q Consensus 263 ~~v~~~~dg 271 (278)
+++.++..|
T Consensus 327 v~fii~~QG 335 (335)
T PF02112_consen 327 VNFIIPEQG 335 (335)
T ss_pred eEEEEcCCC
Confidence 666666544
No 38
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.57 E-value=7.7e-14 Score=116.95 Aligned_cols=124 Identities=16% Similarity=0.178 Sum_probs=85.4
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 116 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~ 116 (278)
.++.||+|...+..+++++|||+|......+.+.+++.+. +|++|++||.|.||++|+..+.+.+ +.+++|+++.
T Consensus 21 ~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~-~i~~Il~TH~H~DHigg~~~l~~~~----~~a~v~~~~~ 95 (251)
T PLN02962 21 SSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGL-KLIYAMNTHVHADHVTGTGLLKTKL----PGVKSIISKA 95 (251)
T ss_pred ceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCC-eeEEEEcCCCCchhHHHHHHHHHHC----CCCeEEeccc
Confidence 4667888763210146899999996433455566666775 7899999999999999999998764 3567777542
Q ss_pred cHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEec-CCCCceeeEEEEc--------cEEEecCC
Q 023686 117 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--------NICYISDV 187 (278)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-H~~~~~~~g~~i~--------~v~~~gD~ 187 (278)
. . ...+....+++.+.+++.+++++.++ |++ .++.|.+. .++|+||+
T Consensus 96 ~---------------------~-~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~--g~v~~~~~d~~~~~~~~~lftGD~ 151 (251)
T PLN02962 96 S---------------------G-SKADLFVEPGDKIYFGDLYLEVRATPGHTA--GCVTYVTGEGPDQPQPRMAFTGDA 151 (251)
T ss_pred c---------------------C-CCCCEEeCCCCEEEECCEEEEEEECCCCCc--CcEEEEeccCCCCCccceEEECCe
Confidence 1 0 00111223678899999887766655 676 67788764 49999997
Q ss_pred CC
Q 023686 188 SE 189 (278)
Q Consensus 188 ~~ 189 (278)
-.
T Consensus 152 Lf 153 (251)
T PLN02962 152 LL 153 (251)
T ss_pred ec
Confidence 43
No 39
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.56 E-value=4e-15 Score=119.36 Aligned_cols=63 Identities=37% Similarity=0.394 Sum_probs=49.6
Q ss_pred cccceeEEEEccCCCCCceEEEecCcchHHHHhh--hCCcCCCCCcCEEEeecCChhhhCChHHHHhhh
Q 023686 36 RRLNTSILIRYPGPSGRRNILIDAGKFFYHSALR--WFPAYGIRTIDAVIITHSHADAIGGLDDLRDWT 102 (278)
Q Consensus 36 ~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~--~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~ 102 (278)
..+++|++|+ .+++.+|||||......... ........+|++||+||.|.||++|+..+.+..
T Consensus 3 ~~~~n~~li~----~~~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~ 67 (194)
T PF00753_consen 3 EGGSNSYLIE----GGDGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAG 67 (194)
T ss_dssp SEEEEEEEEE----ETTEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHT
T ss_pred CeeEEEEEEE----ECCEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECccccccccccccccccc
Confidence 3578899998 57899999999974332221 223456689999999999999999999999875
No 40
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.55 E-value=1.1e-13 Score=119.84 Aligned_cols=122 Identities=14% Similarity=0.180 Sum_probs=87.7
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccc
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 116 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~ 116 (278)
+.|.+|+|... .++..++||+|.. ..+.+.+++.+ .+|++|++||.|+||++|+..+.+.+ +++||++..
T Consensus 85 ~dNy~Yli~d~--~t~~~~vVDP~~a--~~vl~~l~~~g-~~L~~ILlTH~H~DH~GG~~~L~~~~-----ga~V~g~~~ 154 (329)
T PLN02398 85 KDNYAYLLHDE--DTGTVGVVDPSEA--VPVIDALSRKN-RNLTYILNTHHHYDHTGGNLELKARY-----GAKVIGSAV 154 (329)
T ss_pred CceEEEEEEEC--CCCEEEEEcCCCH--HHHHHHHHhcC-CCceEEEECCCCchhhCCHHHHHHhc-----CCEEEEehH
Confidence 46778888642 3467899999864 34555555666 48999999999999999999998865 478999976
Q ss_pred cHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEec-CCCCceeeEEEEc--cEEEecCCCC
Q 023686 117 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 189 (278)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-H~~~~~~~g~~i~--~v~~~gD~~~ 189 (278)
..+.+. ..+....+++.+.+++.+++++.++ |++ ..++|.+. .++|+||+-.
T Consensus 155 ~~~~i~-------------------~~d~~v~dGd~i~lgg~~l~vi~tPGHT~--GhI~~~~~~~~vLFtGDtLf 209 (329)
T PLN02398 155 DKDRIP-------------------GIDIVLKDGDKWMFAGHEVLVMETPGHTR--GHISFYFPGSGAIFTGDTLF 209 (329)
T ss_pred Hhhhcc-------------------CCcEEeCCCCEEEECCeEEEEEeCCCcCC--CCEEEEECCCCEEEECCCcC
Confidence 433211 0122233677888999888877765 777 56677664 7999999854
No 41
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.39 E-value=5e-12 Score=105.96 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=88.4
Q ss_pred CcccceeEEEEccCCCCCceEEEecCcch--HHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEE
Q 023686 35 NRRLNTSILIRYPGPSGRRNILIDAGKFF--YHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIY 112 (278)
Q Consensus 35 ~~~~~~s~li~~~~~~~~~~iLiD~G~~~--~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~ 112 (278)
....++++++.. ..+..+|||+|... ...+...+...+. +|++|++||.|.||++|+..+.+... ..+++
T Consensus 21 ~~~~~~~~~~~~---~~~~~~liD~G~~~~~~~~~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~----~~~~~ 92 (252)
T COG0491 21 PLSGNSVYLLVD---GEGGAVLIDTGLGDADAEALLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFG----AAPVI 92 (252)
T ss_pred ccccccEEEEEc---CCCceEEEeCCCCchHHHHHHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcC----CceEE
Confidence 345666666662 22489999999875 4566666666776 99999999999999999999987642 25565
Q ss_pred eccccHHHHHhccccccccccccCCCCccceeeeeccCCceeecc--eEEEEEEecCCCCceeeEEEEc--cEEEecCCC
Q 023686 113 VAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQD--LKITPLPVWHGAGYRSLGFRFG--NICYISDVS 188 (278)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~i~~~~~~H~~~~~~~g~~i~--~v~~~gD~~ 188 (278)
.++.................................+++.+.+++ +++...| .|++ .+.+|.+. +++|+||..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tp-GHT~--g~~~~~~~~~~~l~~gD~~ 169 (252)
T COG0491 93 APAEVPLLLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTP-GHTP--GHIVFLLEDGGVLFTGDTL 169 (252)
T ss_pred ccchhhhhhhcccccccccccccCCCCccccceecCCCCEEEecCeEEEEEECC-CCCC--CeEEEEECCccEEEeccee
Confidence 444443333332211111000000001011112223567888887 4555555 4887 67788887 499999986
Q ss_pred CC
Q 023686 189 EI 190 (278)
Q Consensus 189 ~~ 190 (278)
..
T Consensus 170 ~~ 171 (252)
T COG0491 170 FA 171 (252)
T ss_pred cc
Confidence 53
No 42
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.38 E-value=4.8e-13 Score=118.57 Aligned_cols=180 Identities=18% Similarity=0.224 Sum_probs=116.0
Q ss_pred CCCCcccceeEEEEccCCCCCceEEEecCcchH---HHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCC
Q 023686 32 GNKNRRLNTSILIRYPGPSGRRNILIDAGKFFY---HSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRH 108 (278)
Q Consensus 32 ~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~---~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~ 108 (278)
|+.++.|.||.++++ ++++|++|||.-.+ ....+.+...+++.||.++|||.|.||++.++++.+.... .
T Consensus 20 Gag~EVGRSC~ile~----kGk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf---~ 92 (668)
T KOG1137|consen 20 GAGNEVGRSCHILEY----KGKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSF---I 92 (668)
T ss_pred CCCcccCceEEEEEe----cCeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeeccc---c
Confidence 667899999999997 57999999996422 2233445567789999999999999999999999987643 3
Q ss_pred ccEEeccccHHHHH---hcccccccccc---ccCCCC-ccc-eeeeeccC-CceeecceEEEEEEecCCCCceeeEEEEc
Q 023686 109 IPIYVAMRDFEVMK---KTHYYLVDTSG---IIPGAA-VSE-LQFNIIDE-EPFTVQDLKITPLPVWHGAGYRSLGFRFG 179 (278)
Q Consensus 109 ~~v~~~~~~~~~l~---~~~~~~~~~~~---~~~~~~-~~~-~~~~~~~~-~~~~~g~~~i~~~~~~H~~~~~~~g~~i~ 179 (278)
.++|.+..+....+ ..+-...+.+. ++...+ ... .++..++- +..++.|++|.++-+.|.-+...+-..+.
T Consensus 93 grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~aGhVlgacMf~veia 172 (668)
T KOG1137|consen 93 GRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYHAGHVLGACMFMVEIA 172 (668)
T ss_pred ceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeeccchhhhheeeeeeec
Confidence 45776665655443 22222222221 111000 011 12222221 56778899999999989874433333333
Q ss_pred --cEEEecCCCCCCcchhhcc----cCCCEEEEcCcCCCCCCCCC
Q 023686 180 --NICYISDVSEIPEETYPFL----QDCEILIMDALRPDRSSSTH 218 (278)
Q Consensus 180 --~v~~~gD~~~~~~~~~~~~----~~~dili~e~~~~~~~~~~H 218 (278)
+++|+||.....++..... .+.|+++.|+++....+..|
T Consensus 173 gv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r 217 (668)
T KOG1137|consen 173 GVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPR 217 (668)
T ss_pred eEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCch
Confidence 9999999976544322211 24899999999876544433
No 43
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.22 E-value=1.1e-10 Score=96.75 Aligned_cols=122 Identities=20% Similarity=0.215 Sum_probs=78.8
Q ss_pred cccceeEEEEccCCCCCceEEEecCcc-hHHHHhhhCCcC--CCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEE
Q 023686 36 RRLNTSILIRYPGPSGRRNILIDAGKF-FYHSALRWFPAY--GIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIY 112 (278)
Q Consensus 36 ~~~~~s~li~~~~~~~~~~iLiD~G~~-~~~~~~~~l~~~--~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~ 112 (278)
-.+|.+||+. ++.+++..|.+.- ..+.+...+.+. .-.+|.+||.||.|+||+||+..+.+... +++.+|
T Consensus 10 ~~~Ny~YLl~----~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~---~~~~v~ 82 (265)
T KOG0813|consen 10 LQDNYMYLLG----DGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIP---YDIKVI 82 (265)
T ss_pred cCCceEEEEe----cccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhcc---CCcEEe
Confidence 4678888888 3345555555432 223333333331 23589999999999999999999988642 467788
Q ss_pred eccccHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEec-CCCCceeeEEEEc-----cEEEecC
Q 023686 113 VAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG-----NICYISD 186 (278)
Q Consensus 113 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-H~~~~~~~g~~i~-----~v~~~gD 186 (278)
+... +. .+.+....-.++.+.+++.+|+.++++ |+. +.+.|.+. +.+|+||
T Consensus 83 g~~~------~r---------------~~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~--~hi~~~~~~~~~e~~iFtGD 139 (265)
T KOG0813|consen 83 GGAD------DR---------------IPGITRGLKDGETVTVGGLEVRCLHTPGHTA--GHICYYVTESTGERAIFTGD 139 (265)
T ss_pred cCCh------hc---------------CccccccCCCCcEEEECCEEEEEEeCCCccC--CcEEEEeecCCCCCeEEeCC
Confidence 7751 10 111111222568999999999988766 676 44555554 7999999
Q ss_pred C
Q 023686 187 V 187 (278)
Q Consensus 187 ~ 187 (278)
+
T Consensus 140 t 140 (265)
T KOG0813|consen 140 T 140 (265)
T ss_pred c
Confidence 7
No 44
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.21 E-value=1.1e-10 Score=94.70 Aligned_cols=223 Identities=17% Similarity=0.193 Sum_probs=120.5
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHH----------H---H---hhhCCcCCCCCcCEEEeecCChhhhCChH-HHH
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYH----------S---A---LRWFPAYGIRTIDAVIITHSHADAIGGLD-DLR 99 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~----------~---~---~~~l~~~~~~~Id~v~iTH~H~DH~~gl~-~l~ 99 (278)
....|.+|+ +.+-.||||+|.+.+. . + ...+... .++.|.|.|||.|+||..-.. .+.
T Consensus 13 VRSmAt~ve----t~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~-ak~a~VitISHYHYDHhtPf~~~~y 87 (304)
T COG2248 13 VRSMATFVE----TKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRY-AKKADVITISHYHYDHHTPFFDGIY 87 (304)
T ss_pred hhhhhheee----cCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHH-HhhCCEEEEeeeccccCCccccchh
Confidence 345677888 6789999999954211 0 1 1111111 257788999999999997411 111
Q ss_pred hhhccCC---CCccEEeccccHHHHHh---ccccccccccccCCCCccceeeeeccCCceeecceEEEEEE-ecCCCCce
Q 023686 100 DWTNNVQ---RHIPIYVAMRDFEVMKK---THYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLP-VWHGAGYR 172 (278)
Q Consensus 100 ~~~~~~~---~~~~v~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~-~~H~~~~~ 172 (278)
..+.... ...++..-+...+.+.+ ...+-+-. ...-...++..-|+.+|++|+..|++-| ++|++...
T Consensus 88 ~~s~e~~~eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~-----~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGs 162 (304)
T COG2248 88 EASGETAKEIYKGKLLLLKHPTENINRSQRRRAYRFLE-----SLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGS 162 (304)
T ss_pred hhcccchHHHhcCcEEEecCchhhhCHHHHHHHHHHHH-----HhhhhcceeEecCCceEEeCCEEEEecCCCCCCCccc
Confidence 1110000 01122222222222211 00000000 0011112455568899999999988754 67888546
Q ss_pred eeEEEEc--------cEEEecCCC-CCCcchhhccc--CCCEEEEcCc--CCCCCCCCCCCHHHHHHHHHH---hCCCeE
Q 023686 173 SLGFRFG--------NICYISDVS-EIPEETYPFLQ--DCEILIMDAL--RPDRSSSTHFGLPRALEEVRK---IQPKRT 236 (278)
Q Consensus 173 ~~g~~i~--------~v~~~gD~~-~~~~~~~~~~~--~~dili~e~~--~~~~~~~~H~~~~~~~~~~~~---l~~~~~ 236 (278)
-+||.+. +++|+.|.. +..++.++++. ++++++++.- |.-....+-...+..++-+++ ...+++
T Consensus 163 kLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~l 242 (304)
T COG2248 163 KLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATL 242 (304)
T ss_pred ccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceE
Confidence 7788774 999999997 55555666654 5999988652 111111111223333333333 234777
Q ss_pred EEEeeccC-CChhhHHHHHHHhhhhCCCceEEee
Q 023686 237 LFIGMMHL-MDHEKVNEELLKLMETEGLDVQLSY 269 (278)
Q Consensus 237 v~~h~~~~-~~~~~~~~~~~~~~~~~g~~v~~~~ 269 (278)
|+-|+--. .++.+..+.+.+.+++.|+.|..+.
T Consensus 243 ViDHHllRD~~y~e~l~~l~~~~~~~GV~v~TaA 276 (304)
T COG2248 243 VIDHHLLRDKNYREFLEELFERAEKAGVEVATAA 276 (304)
T ss_pred EEeehhhcCCCHHHHHHHHHhhHhhcCceeeeHH
Confidence 88774433 3445566677777788887766543
No 45
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=99.10 E-value=1.8e-09 Score=88.46 Aligned_cols=197 Identities=20% Similarity=0.284 Sum_probs=124.2
Q ss_pred CCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhccccccccccccCCCCccceeeeecc-CCcee-
Q 023686 77 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFT- 154 (278)
Q Consensus 77 ~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 154 (278)
..|...+|||+|.||+.|+-.-....... .+-+||+.+.+...+++...++.-+...-. .....+++.+++ .+..+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~q-kkkTI~gl~~tIDvL~khvFN~lvWP~lt~-~gs~~~~~qvv~P~~~~sl 188 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQ-KKKTIYGLADTIDVLRKHVFNWLVWPNLTD-SGSGTYRMQVVRPAQSLSL 188 (356)
T ss_pred hhhhheEeccccccchhceeecCcccccc-CCceEEechhHHHHHHHHhhcccccCCccc-ccCceEEEEEeChhHeeee
Confidence 46889999999999999986654444332 346799999999999887555443322111 122356777773 34333
Q ss_pred -ecceEEEEEEecCCCC--cee--eEEEEc------cEEEecCCCCCC---cc----hhhcc------cCCCEEEEcCcC
Q 023686 155 -VQDLKITPLPVWHGAG--YRS--LGFRFG------NICYISDVSEIP---EE----TYPFL------QDCEILIMDALR 210 (278)
Q Consensus 155 -~g~~~i~~~~~~H~~~--~~~--~g~~i~------~v~~~gD~~~~~---~~----~~~~~------~~~dili~e~~~ 210 (278)
+-.+.+.++|+.|... .++ ..|.+. -+++.||.++.. ++ .+.++ +...-++.||.+
T Consensus 189 t~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~ 268 (356)
T COG5212 189 TLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSY 268 (356)
T ss_pred eeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecC
Confidence 3456789999999762 222 445554 699999997632 11 12221 125557789988
Q ss_pred CCCCC----CCCCCHHHHHHHHHHhC----------CCeEEEEeeccCCChh-----hHHHHHHHhhhhC---CCceEEe
Q 023686 211 PDRSS----STHFGLPRALEEVRKIQ----------PKRTLFIGMMHLMDHE-----KVNEELLKLMETE---GLDVQLS 268 (278)
Q Consensus 211 ~~~~~----~~H~~~~~~~~~~~~l~----------~~~~v~~h~~~~~~~~-----~~~~~~~~~~~~~---g~~v~~~ 268 (278)
++... .+|+++.-++..+..++ .=.++++|........ .+.++++.++++- +..+.+.
T Consensus 269 P~~~~~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~q~~~pr~~ILeeL~fLae~~nl~~~~f~i~ 348 (356)
T COG5212 269 PNDVADNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQQGQDPRKLILEELQFLAEQGNLMGIEFIIM 348 (356)
T ss_pred CCCCChhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCcccccCCHHHHHHHHHHHHHhcCCccceEEEee
Confidence 87543 58999988877766653 2356788876654321 2456666666553 3456677
Q ss_pred ecCeEEe
Q 023686 269 YDGLRVP 275 (278)
Q Consensus 269 ~dg~~i~ 275 (278)
..|....
T Consensus 349 ~~G~~~k 355 (356)
T COG5212 349 EQGDSQK 355 (356)
T ss_pred ecccccc
Confidence 7666543
No 46
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=99.00 E-value=4e-09 Score=96.28 Aligned_cols=165 Identities=22% Similarity=0.257 Sum_probs=104.9
Q ss_pred ccceeEEEEccCCCCCceEEEecCcc--hHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEec
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKF--FYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVA 114 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~--~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~ 114 (278)
-+..|++++. .+..||||||+. +..+....++.. ++.||+|++||.+.=|+|||++.....+ -+++||++
T Consensus 13 e~~~cyllqi----D~~~iLiDcGwd~~f~~~~i~~l~~~-i~~iDaILLShpd~~hlGaLpY~~~k~g---l~~~VYAT 84 (764)
T KOG1135|consen 13 EGPLCYLLQI----DGVRILIDCGWDESFDMSMIKELKPV-IPTIDAILLSHPDILHLGALPYAVGKLG---LNAPVYAT 84 (764)
T ss_pred CCcceEEEEE----cCeEEEEeCCCcchhccchhhhhhcc-cccccEEEecCCChHHhccchhhHhhCC---ccceEEEe
Confidence 4566899985 679999999986 444555554444 5799999999999999999999987653 35789998
Q ss_pred cccHHHHHhcccccccccc-c--cCCCCccc-----eeeeecc-CCceee----cceEEEEEEecCCCCceeeEEEEc--
Q 023686 115 MRDFEVMKKTHYYLVDTSG-I--IPGAAVSE-----LQFNIID-EEPFTV----QDLKITPLPVWHGAGYRSLGFRFG-- 179 (278)
Q Consensus 115 ~~~~~~l~~~~~~~~~~~~-~--~~~~~~~~-----~~~~~~~-~~~~~~----g~~~i~~~~~~H~~~~~~~g~~i~-- 179 (278)
-.+...-+...+....... . ........ -++..+. .++..+ .|+.|+++++.|..| ++++-...
T Consensus 85 ~PV~~mG~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiG-GsIWkI~k~~ 163 (764)
T KOG1135|consen 85 LPVIKMGQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIG-GSIWKISKVG 163 (764)
T ss_pred cchhhhhhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccC-ceEEEEEecC
Confidence 8665432221111111100 0 00000001 1122221 244444 367999999999984 44443333
Q ss_pred -cEEEecCCCCCCc-----chhhcccCCCEEEEcCcC
Q 023686 180 -NICYISDVSEIPE-----ETYPFLQDCEILIMDALR 210 (278)
Q Consensus 180 -~v~~~gD~~~~~~-----~~~~~~~~~dili~e~~~ 210 (278)
+++|+-|.+.--| ..++.+..+.++|+++..
T Consensus 164 E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~ 200 (764)
T KOG1135|consen 164 EDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANH 200 (764)
T ss_pred ceEEEEEecccchhcccCCccccccCCcceEEecccc
Confidence 9999999876433 345666678999998854
No 47
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.88 E-value=2.5e-08 Score=89.19 Aligned_cols=190 Identities=19% Similarity=0.239 Sum_probs=117.4
Q ss_pred CceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHHHHHhcccccccc
Q 023686 52 RRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDT 131 (278)
Q Consensus 52 ~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~ 131 (278)
-..+.+++|..+.....++ .......+-|+||.|.||..||..-.. +.++|+++-++..+......
T Consensus 89 ~~~~~~~p~~~f~VD~f~~---~~~~~~s~yFLsHFHSDHy~GL~~sW~-------~p~lYCS~ita~Lv~~~~~v---- 154 (481)
T KOG1361|consen 89 LHVIKVLPGGEFSVDAFRY---GHIEGCSAYFLSHFHSDHYIGLTKSWS-------HPPLYCSPITARLVPLKVSV---- 154 (481)
T ss_pred CcceeecCCCcEEEehhhc---CCccccceeeeeccccccccccccccc-------CCcccccccchhhhhhhccc----
Confidence 3577888876443222221 223467899999999999888776432 34599999888877654321
Q ss_pred ccccCCCCccceeeeecc-CCceeecceEEEEEEecCCCCceeeEEEEc---cEEEecCCCCCCcchhh----cc-cCCC
Q 023686 132 SGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG---NICYISDVSEIPEETYP----FL-QDCE 202 (278)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~~~~g~~~i~~~~~~H~~~~~~~g~~i~---~v~~~gD~~~~~~~~~~----~~-~~~d 202 (278)
..-....++ ++.+.+.++.++.+++.|.++.-++-|... .++++||+.+..+ +.. .. +..+
T Consensus 155 ---------~~~~i~~l~l~~~~~i~~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~-m~~~p~~~~~~~i~ 224 (481)
T KOG1361|consen 155 ---------TKQSIQALDLNQPLEIPGIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASAD-MSKEPALTLEQTID 224 (481)
T ss_pred ---------ChhhceeecCCCceeecceEEEEeccccCCCceEEEeecCCCceEEecCCcccChh-hhhChHHhcCCccc
Confidence 111223343 578888899999999999995444444443 8999999987443 322 22 4699
Q ss_pred EEEEcCcCCCCCCC---CCCCHHHHHHHHHHhCC--CeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEe
Q 023686 203 ILIMDALRPDRSSS---THFGLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLS 268 (278)
Q Consensus 203 ili~e~~~~~~~~~---~H~~~~~~~~~~~~l~~--~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~ 268 (278)
.+.+|.+|...... .+.....+.+.+..... .++++.+.....+.++ .+.+.++.+..++.+.
T Consensus 225 ~lyLDtTycnp~y~Fpsq~esvq~v~~~i~~~~~~~~~~Li~v~~ysiGkE~---l~~eia~~l~~kI~v~ 292 (481)
T KOG1361|consen 225 ILYLDTTYCNPKYDFPSQEESVQEVVDVIRSHASKNDRVLIVVGTYSIGKEK---LLLEIARILNSKIWVE 292 (481)
T ss_pred eEEEeecccCCCCCCccHHHHHHHHHHHHHhhhhhCCceEEEEEEEecchhH---HHHHHHHHhCCceEEe
Confidence 99999998764321 12333444444444332 2455555555566543 3356666665555553
No 48
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=98.88 E-value=5.7e-09 Score=80.17 Aligned_cols=121 Identities=15% Similarity=0.167 Sum_probs=84.2
Q ss_pred cccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEecc
Q 023686 36 RRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAM 115 (278)
Q Consensus 36 ~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~ 115 (278)
++.+.+|++-. ..++++++||+-......-.+.+++.++ ++-+-+.||.|.||+.|...|...+ |
T Consensus 18 ~SsTytYll~d--~~~~~AviIDPV~et~~RD~qlikdLgl-~LiYa~NTH~HADHiTGtg~Lkt~~----p-------- 82 (237)
T KOG0814|consen 18 ESSTYTYLLGD--HKTGKAVIIDPVLETVSRDAQLIKDLGL-DLIYALNTHVHADHITGTGLLKTLL----P-------- 82 (237)
T ss_pred ccceEEEEeee--CCCCceEEecchhhcccchHHHHHhcCc-eeeeeecceeecccccccchHHHhc----c--------
Confidence 34555666654 2467899999987543344455567887 6679999999999999999986643 2
Q ss_pred ccHHHHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEec-CCCCceeeEEEEc--cEEEecCC
Q 023686 116 RDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDV 187 (278)
Q Consensus 116 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~-H~~~~~~~g~~i~--~v~~~gD~ 187 (278)
.....+.+.. -.+-+....+|+.+++|++.++....+ |++ .|+-|... +.+|+||+
T Consensus 83 g~kSVis~~S--------------GakAD~~l~~Gd~i~~G~~~le~ratPGHT~--GC~TyV~~d~~~aFTGDa 141 (237)
T KOG0814|consen 83 GCKSVISSAS--------------GAKADLHLEDGDIIEIGGLKLEVRATPGHTN--GCVTYVEHDLRMAFTGDA 141 (237)
T ss_pred cHHHHhhhcc--------------ccccccccCCCCEEEEccEEEEEecCCCCCC--ceEEEEecCcceeeecce
Confidence 2223333221 111233455889999999988776655 554 89999998 89999997
No 49
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.77 E-value=2.5e-07 Score=75.40 Aligned_cols=211 Identities=16% Similarity=0.116 Sum_probs=122.5
Q ss_pred cceeEEEEccCCCCCceEEEecCcchH--------HHHhhh-CCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCC
Q 023686 38 LNTSILIRYPGPSGRRNILIDAGKFFY--------HSALRW-FPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRH 108 (278)
Q Consensus 38 ~~~s~li~~~~~~~~~~iLiD~G~~~~--------~~~~~~-l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~ 108 (278)
|+++.++.. ++-.+|-|+-.... .+..+. ....++.++|-+++||.|+||. .+..+..+.+. +
T Consensus 87 g~a~~~~~~----~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhl-d~~~~~~~~~~---~ 158 (343)
T KOG3798|consen 87 GHATVLVDL----EGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHL-DADAVKKITDR---N 158 (343)
T ss_pred cceeEEEec----cCcEEecchhhccchhhcccCcccccCCchhhccCCCCceecccccccccc-chHHHHhhhcc---C
Confidence 778888885 45677777654211 111110 1123467999999999999999 55555555432 2
Q ss_pred cc-EEeccccHHHHHhccccccccccccCCCCccceeeeec-cC---Cceeec-ceEEEEEEecCCCCc--------eee
Q 023686 109 IP-IYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DE---EPFTVQ-DLKITPLPVWHGAGY--------RSL 174 (278)
Q Consensus 109 ~~-v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~g-~~~i~~~~~~H~~~~--------~~~ 174 (278)
.+ -+++......+.. + ... .+.++ .+ +...-+ -+.|.+.|++|..+. --.
T Consensus 159 ~~~wfvp~g~k~~m~~------~--------gc~--~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~ 222 (343)
T KOG3798|consen 159 PQIWFVPLGMKKWMEG------D--------GSS--TVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWS 222 (343)
T ss_pred ccceeehhhhhheecC------C--------CCC--ceeEeeccchhceecCCcEEEEEEcchhhhcccccccCCcceee
Confidence 22 3333333222221 0 000 01111 22 222222 357888999997531 112
Q ss_pred EEEEc----cEEEecCCCCCCcc---hhhcccCCCEEEEcCcCCC-C--CCCCCCCHHHHHHHHHHhCCCeEEEEeeccC
Q 023686 175 GFRFG----NICYISDVSEIPEE---TYPFLQDCEILIMDALRPD-R--SSSTHFGLPRALEEVRKIQPKRTLFIGMMHL 244 (278)
Q Consensus 175 g~~i~----~v~~~gD~~~~~~~---~~~~~~~~dili~e~~~~~-~--~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~ 244 (278)
+|.+- +++|.||+++.+.. +-+.+-..|+..+.+.... + .-+.|..++++++..+.+++++.+-+|+...
T Consensus 223 sw~v~g~~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGaYePrWfmK~~HInPeEav~Ihkdv~arns~gIHWGTf 302 (343)
T KOG3798|consen 223 SWAVIGENNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGAYEPRWFMKSQHINPEEAVEIHKDVRAKNSIGIHWGTF 302 (343)
T ss_pred eeEEecCCceEEecCCCCcccHHHHHHHHhcCCcceeeccccccCchhhcccccCCHHHHHHHHHHHhhhcceeEeeeee
Confidence 33332 99999999998742 3333445888877775432 2 2367999999999999999999999997765
Q ss_pred CChh----hHHHHHHHhhhhCCC---ceEEeecCe
Q 023686 245 MDHE----KVNEELLKLMETEGL---DVQLSYDGL 272 (278)
Q Consensus 245 ~~~~----~~~~~~~~~~~~~g~---~v~~~~dg~ 272 (278)
.-.. +..+.+.++++..|+ .++...-|+
T Consensus 303 ~l~~EyyLEP~~KL~el~e~~glkd~~f~~~e~Ge 337 (343)
T KOG3798|consen 303 HLGSEYYLEPRDKLKELMEAEGLKDTSFVTIEMGE 337 (343)
T ss_pred ecccceecCcHHHHHHHHHhcCCCCceEEeecccc
Confidence 4221 124456666666654 244544454
No 50
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=98.67 E-value=5e-07 Score=70.23 Aligned_cols=168 Identities=16% Similarity=0.182 Sum_probs=85.9
Q ss_pred eeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHH
Q 023686 40 TSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 119 (278)
Q Consensus 40 ~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~ 119 (278)
+|++... .+.+||||+-+-... ..++|...+ .+++|++||. ||......+.+.+ .++||+|....+
T Consensus 24 ng~~~~~----p~GnilIDP~~ls~~-~~~~l~a~g--gv~~IvLTn~--dHvR~A~~ya~~~-----~a~i~~p~~d~~ 89 (199)
T PF14597_consen 24 NGHAWRR----PEGNILIDPPPLSAH-DWKHLDALG--GVAWIVLTNR--DHVRAAEDYAEQT-----GAKIYGPAADAA 89 (199)
T ss_dssp EEEEE------TT--EEES-----HH-HHHHHHHTT----SEEE-SSG--GG-TTHHHHHHHS-------EEEEEGGGCC
T ss_pred eeEEEEc----CCCCEEecCccccHH-HHHHHHhcC--CceEEEEeCC--hhHhHHHHHHHHh-----CCeeeccHHHHh
Confidence 4555552 678999999874333 344444443 7899999987 9999999998876 589999987653
Q ss_pred HHHhccccccccccccCCCCccceeeeeccCCceeecceEEEEEEecCCCCceeeEEEEc-cEEEecCCCCCCcchhhcc
Q 023686 120 VMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFG-NICYISDVSEIPEETYPFL 198 (278)
Q Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~H~~~~~~~g~~i~-~v~~~gD~~~~~~~~~~~~ 198 (278)
.+.-.. + ..+++...-++|+.+..++.+|++ +.+++..+ +++++||...-.
T Consensus 90 ~~p~~~------------------D-~~l~dge~i~~g~~vi~l~G~ktp--GE~ALlled~vLi~GDl~~~~------- 141 (199)
T PF14597_consen 90 QFPLAC------------------D-RWLADGEEIVPGLWVIHLPGSKTP--GELALLLEDRVLITGDLLRSH------- 141 (199)
T ss_dssp C-SS--------------------S-EEE-TT-BSSTTEEEEEE-SSSST--TEEEEEETTTEEEESSSEEBS-------
T ss_pred hCCCCC------------------c-cccccCCCccCceEEEEcCCCCCC--ceeEEEeccceEEecceeeec-------
Confidence 221110 1 233333345689999999999998 67888888 999999963211
Q ss_pred cCCCEEEEcCcCCCCCCCCCCCHHHH---HHHHHHh-CCCeEEEEeeccCCChhhHHHHHHHhh
Q 023686 199 QDCEILIMDALRPDRSSSTHFGLPRA---LEEVRKI-QPKRTLFIGMMHLMDHEKVNEELLKLM 258 (278)
Q Consensus 199 ~~~dili~e~~~~~~~~~~H~~~~~~---~~~~~~l-~~~~~v~~h~~~~~~~~~~~~~~~~~~ 258 (278)
...++.++..... ..+.++ +..+.++ ..+.+.+.|+-+..... .+.+++++
T Consensus 142 ~~g~l~lLpd~k~-------~d~~~a~~sl~RLa~~~~fe~lLvGdGwpi~~~~--r~rl~~L~ 196 (199)
T PF14597_consen 142 PAGSLSLLPDEKL-------YDPTEARASLRRLAAYPDFEWLLVGDGWPIFRDA--RQRLRELV 196 (199)
T ss_dssp STTS-EE--GGG--------S-HHHHHHHHHHHHT-TT--EEEESBB--B-S-H--HHHHHHHH
T ss_pred CCCCeEECChHHc-------CCHHHHHHHHHHHhccccccEEeecCCchhhhhH--HHHHHHHH
Confidence 1122322222111 234444 4455555 57777777766655432 33444443
No 51
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.96 E-value=2.2e-05 Score=69.81 Aligned_cols=70 Identities=24% Similarity=0.227 Sum_probs=48.7
Q ss_pred CCCceEEEecCcc---hHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHH
Q 023686 50 SGRRNILIDAGKF---FYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 119 (278)
Q Consensus 50 ~~~~~iLiD~G~~---~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~ 119 (278)
++...|+||+=.. ....+.-.-...+-+.|.+|+-||+|.||+||..-+...-.....+.+|++|..-.+
T Consensus 133 Gdtg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFme 205 (655)
T COG2015 133 GDTGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFME 205 (655)
T ss_pred CCcceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchhHHH
Confidence 5667999999654 222222222244556899999999999999999888765444445688999886553
No 52
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.41 E-value=0.00053 Score=44.40 Aligned_cols=49 Identities=18% Similarity=0.342 Sum_probs=41.3
Q ss_pred eeEEEEccCCCCCceEEE-ecCcchHHHHhhhCCcCCCCCcCEEEeecCC-hhhhCC
Q 023686 40 TSILIRYPGPSGRRNILI-DAGKFFYHSALRWFPAYGIRTIDAVIITHSH-ADAIGG 94 (278)
Q Consensus 40 ~s~li~~~~~~~~~~iLi-D~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H-~DH~~g 94 (278)
.|+++.. +++..|| ++|.+..+.+.+. +..+.+++.||+|+.. ||++||
T Consensus 13 p~l~l~~----d~~rYlFGn~gEGtQR~~~e~--~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFF----DSRRYLFGNCGEGTQRACNEH--KIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEe----CCceEEeccCCcHHHHHHHHc--CCCccccceEEECCCCcccccCC
Confidence 7899984 5799999 9999976666553 6667899999999999 999987
No 53
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.049 Score=46.05 Aligned_cols=44 Identities=23% Similarity=0.386 Sum_probs=34.2
Q ss_pred CCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHH
Q 023686 50 SGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDL 98 (278)
Q Consensus 50 ~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l 98 (278)
+++..+++|.|.+. +.+. .....+|+.+++||.|++|++++..+
T Consensus 102 d~~~v~v~~~gls~---lak~--~vt~d~i~~vv~t~~~~~hlgn~~~f 145 (302)
T KOG4736|consen 102 DGGDVVVVDTGLSV---LAKE--GVTLDQIDSVVITHKSPGHLGNNNLF 145 (302)
T ss_pred cCCceEEEecCCch---hhhc--CcChhhcceeEEeccCcccccccccc
Confidence 46789999999872 3221 34458999999999999999988665
No 54
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=93.53 E-value=0.1 Score=30.94 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=25.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEeecc
Q 023686 215 SSTHFGLPRALEEVRKIQPKRTLFIGMMH 243 (278)
Q Consensus 215 ~~~H~~~~~~~~~~~~l~~~~~v~~h~~~ 243 (278)
-.+|....++.++++.++|++++++|+.+
T Consensus 14 fSgHad~~~L~~~i~~~~p~~vilVHGe~ 42 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLNPRKVILVHGEP 42 (43)
T ss_dssp CSSS-BHHHHHHHHHHHCSSEEEEESSEH
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEecCCC
Confidence 46899999999999999999999999763
No 55
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=92.77 E-value=0.069 Score=50.35 Aligned_cols=58 Identities=24% Similarity=0.375 Sum_probs=41.4
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhh
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDW 101 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~ 101 (278)
||.++++-. ++.+||+|.|..-..-+++.++. +.+||+|++||.-.|-..|+.-|+++
T Consensus 47 ~gdaALFav-----nGf~iLv~GgserKS~fwklVrH--ldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 47 RGDAALFAV-----NGFNILVNGGSERKSCFWKLVRH--LDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred CCcceeEee-----cceEEeecCCcccccchHHHHHH--HhhhhhhhhcccccCccccchHHHHH
Confidence 555565554 57899999887532223333222 36899999999999999999988864
No 56
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=91.38 E-value=0.61 Score=42.52 Aligned_cols=58 Identities=21% Similarity=0.142 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCCC---ceEEeecCeEEeec
Q 023686 215 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGL---DVQLSYDGLRVPVM 277 (278)
Q Consensus 215 ~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~---~v~~~~dg~~i~~~ 277 (278)
-.+|.+.+++.++++.++|+.++++|+.... .....+++++.|+ ++.++..|..+.++
T Consensus 358 ~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~-----~~~~~~~a~~~g~~~~~~~~~~nG~~~~~~ 418 (422)
T TIGR00649 358 VSGHASQEDHKLLLRLLKPKYIIPVHGEYRM-----LINHTKLAEEEGYPGENIFILRNGDVLEIN 418 (422)
T ss_pred ecCCCCHHHHHHHHHHhCCCEEEecCCcHHH-----HHHHHHHHHHcCCCcccEEEecCCcEEEec
Confidence 4689999999999999999999999966432 3344556666776 69999999998874
No 57
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=83.48 E-value=19 Score=33.72 Aligned_cols=88 Identities=17% Similarity=0.131 Sum_probs=57.1
Q ss_pred ccceeEEEEccCCCCCceEEEecCcchHHHHhhhCC-----cCCC-----CCcCEEEeecCChhhhCChHHHHhhhccC-
Q 023686 37 RLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFP-----AYGI-----RTIDAVIITHSHADAIGGLDDLRDWTNNV- 105 (278)
Q Consensus 37 ~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~-----~~~~-----~~Id~v~iTH~H~DH~~gl~~l~~~~~~~- 105 (278)
..+.|.++. .=.+..|+++|.-++. -.+.+. ..++ +.+-++.++|.|.||.+-+.++....-.+
T Consensus 161 VlgacMf~v----eiagv~lLyTGd~sre-eDrhl~aae~P~~~~dvli~estygv~~h~~r~~re~rlt~vIh~~v~rG 235 (668)
T KOG1137|consen 161 VLGACMFMV----EIAGVRLLYTGDYSRE-EDRHLIAAEMPPTGPDVLITESTYGVQIHEPREEREGRLTWVIHSTVPRG 235 (668)
T ss_pred hhhheeeee----eeceEEEEeccccchh-hcccccchhCCCCCccEEEEEeeeeEEecCchHHhhhhhhhhHHhhccCC
Confidence 444555544 2367899999975422 223322 2222 45668889999999999999999875311
Q ss_pred -CCCccEEeccccHHHHHhcccccc
Q 023686 106 -QRHIPIYVAMRDFEVMKKTHYYLV 129 (278)
Q Consensus 106 -~~~~~v~~~~~~~~~l~~~~~~~~ 129 (278)
..-+|||+.....+.+.-..++|.
T Consensus 236 GR~L~PvFAlgrAqELllildeyw~ 260 (668)
T KOG1137|consen 236 GRVLIPVFALGRAQELLLILDEYWG 260 (668)
T ss_pred CceEeeeeecchHHHHHHHHHHHhh
Confidence 223789998888887766555553
No 58
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=82.19 E-value=4.7 Score=38.79 Aligned_cols=57 Identities=14% Similarity=0.080 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHhCC--CeEEEEeeccCCChhhHHHHHHHh-hhhCCCceEEeecCeEEee
Q 023686 215 SSTHFGLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELLKL-METEGLDVQLSYDGLRVPV 276 (278)
Q Consensus 215 ~~~H~~~~~~~~~~~~l~~--~~~v~~h~~~~~~~~~~~~~~~~~-~~~~g~~v~~~~dg~~i~~ 276 (278)
-.+|....+++++++++++ ++++++|+... ..+.+++. .++++.++.++..|.+|.+
T Consensus 570 fSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~-----~~~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 570 FSGHSDRRQLMNYVRRMQPKPEKILLNHGEPS-----KILDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred ccccCCHHHHHHHHHhcCCCCCEEEEEcCCHH-----HHHHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 4779999999999999965 89999996642 12333343 3466788999999999876
No 59
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=67.88 E-value=1.1e+02 Score=28.68 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=32.1
Q ss_pred CCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEeccccHH
Q 023686 74 YGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 119 (278)
Q Consensus 74 ~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~~~ 119 (278)
.+...||.|+||..| -..|+|++.+..+ -..+||+++.+.+
T Consensus 92 ld~stiDvILISNy~--~mlgLPfiTentG---F~gkiY~TE~t~q 132 (653)
T KOG1138|consen 92 LDASTIDVILISNYM--GMLGLPFITENTG---FFGKIYATEPTAQ 132 (653)
T ss_pred hcccceeEEEEcchh--hhcccceeecCCC---ceeEEEEechHHH
Confidence 556899999999987 5679999887643 3568999997664
No 60
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=65.86 E-value=12 Score=35.36 Aligned_cols=58 Identities=19% Similarity=0.094 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCC---CceEEeecCeEEeec
Q 023686 215 SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEG---LDVQLSYDGLRVPVM 277 (278)
Q Consensus 215 ~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g---~~v~~~~dg~~i~~~ 277 (278)
..+|.+.++...+++.++|+.++++|+...+.. ...+.+++.| .++.+...|..++++
T Consensus 368 vSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~-----~~a~la~~~G~~~~~i~i~~nG~v~~l~ 428 (555)
T COG0595 368 VSGHASREELKLMINLLRPKYLIPVHGEYRMLV-----AHAKLAEEEGIPQENIFILRNGDVLELE 428 (555)
T ss_pred ecCCCChHHHHHHHHhhCCceecccCCCcHHHH-----HHHHHHHhcCCCcccEEEecCceEEEec
Confidence 478999999999999999999999997755432 2233344433 268888999888875
No 61
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=63.37 E-value=22 Score=31.17 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=44.7
Q ss_pred CCCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHH-hhhhCCCceEEeecCeEEee
Q 023686 214 SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLK-LMETEGLDVQLSYDGLRVPV 276 (278)
Q Consensus 214 ~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~-~~~~~g~~v~~~~dg~~i~~ 276 (278)
+-..|......+++++...|++++++|++... .+.+++ .-++++++++++..|+++.+
T Consensus 387 aFSaHaDAkGIm~li~~csPknVmlVHGE~~k-----M~~Lk~ki~~e~~ip~~mPaNGetv~i 445 (501)
T KOG1136|consen 387 AFSAHADAKGIMQLIKQCSPKNVMLVHGEKSK-----MKFLKEKIESEFDIPTFMPANGETVVI 445 (501)
T ss_pred eeccccCchhHHHHHHhcCcceEEEEeccchh-----hHHHHHhhHhhcCCceeeCCCCCEEEe
Confidence 34678999999999999999999999976532 233333 33578899999999988765
No 62
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=60.74 E-value=7.2 Score=31.13 Aligned_cols=54 Identities=17% Similarity=0.163 Sum_probs=30.2
Q ss_pred EEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCCCccEEecccc
Q 023686 56 LIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRD 117 (278)
Q Consensus 56 LiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~~~~v~~~~~~ 117 (278)
|||.|.++.. ..+.|++.|..+| +++.||+-+- ++....++.. +--.|+++...
T Consensus 92 iIdtg~Tl~~-aA~~Lk~~GA~~V-~~~aTHgvfs--~~A~~~l~~s----~Id~vvvTnTI 145 (184)
T PF14572_consen 92 IIDTGGTLIK-AAELLKERGAKKV-YACATHGVFS--GDAPERLEES----PIDEVVVTNTI 145 (184)
T ss_dssp EESSTHHHHH-HHHHHHHTTESEE-EEEEEEE-----TTHHHHHHHS----SESEEEEETTS
T ss_pred cccchHHHHH-HHHHHHHcCCCEE-EEEEeCcccC--chHHHHHhhc----CCeEEEEeccc
Confidence 4566766533 3345567888888 8999998763 3444444432 22346666544
No 63
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=48.95 E-value=19 Score=26.00 Aligned_cols=27 Identities=22% Similarity=0.194 Sum_probs=23.7
Q ss_pred CCCCCCCHHHHHHHHHHhCCCeEEEEe
Q 023686 214 SSSTHFGLPRALEEVRKIQPKRTLFIG 240 (278)
Q Consensus 214 ~~~~H~~~~~~~~~~~~l~~~~~v~~h 240 (278)
+..-|++..|+.++++.++|++++++-
T Consensus 80 PYSeHSSf~EL~~Fv~~l~P~~IiPtV 106 (110)
T PF07522_consen 80 PYSEHSSFSELKEFVSFLKPKKIIPTV 106 (110)
T ss_pred ecccCCCHHHHHHHHHhcCCcEEEccc
Confidence 446699999999999999999999764
No 64
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=48.70 E-value=25 Score=22.78 Aligned_cols=49 Identities=18% Similarity=0.360 Sum_probs=29.5
Q ss_pred CCCCccccccccCCCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCE
Q 023686 19 SKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDA 81 (278)
Q Consensus 19 ~~~~~~c~~~~~~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~ 81 (278)
...|++|+..++|| +--++|+ ++..++.=|..-... +.+. ...+.++.+
T Consensus 3 ~~~CsFcG~~I~PG------tG~m~Vr-----~Dg~v~~FcssKc~k-~~~~--~rnPRk~~W 51 (66)
T COG2075 3 VRVCSFCGKKIEPG------TGIMYVR-----NDGKVLRFCSSKCEK-LFKL--GRNPRKLKW 51 (66)
T ss_pred eeEecCcCCccCCC------ceEEEEe-----cCCeEEEEechhHHH-HHHc--cCCCccchh
Confidence 45799999999875 3356666 355666666665434 3222 344555543
No 65
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=47.97 E-value=87 Score=25.78 Aligned_cols=68 Identities=22% Similarity=0.279 Sum_probs=40.3
Q ss_pred cchhhcccCCCEEEEcCcCCCCCCCCCCCHH-HHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeec
Q 023686 192 EETYPFLQDCEILIMDALRPDRSSSTHFGLP-RALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYD 270 (278)
Q Consensus 192 ~~~~~~~~~~dili~e~~~~~~~~~~H~~~~-~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~d 270 (278)
++.++.+.++|++++=.. |...- ++.+.+++-+.+-++..-+... ....+++++.++++|+.+..+..
T Consensus 43 ee~Lp~i~~~Dl~I~y~l--------HPDl~~~l~~~~~e~g~kavIvp~~~~~---~g~~~~lk~~~e~~gi~~~~P~~ 111 (217)
T PF02593_consen 43 EEYLPKIPEADLLIAYGL--------HPDLTYELPEIAKEAGVKAVIVPSESPK---PGLRRQLKKQLEEFGIEVEFPKP 111 (217)
T ss_pred HHHccCCCCCCEEEEecc--------CchhHHHHHHHHHHcCCCEEEEecCCCc---cchHHHHHHHHHhcCceeecCcc
Confidence 444555778999987322 33332 4555666655555543332222 33467888888888877776654
No 66
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=40.63 E-value=16 Score=22.99 Aligned_cols=15 Identities=47% Similarity=1.061 Sum_probs=11.8
Q ss_pred CCCCCCccccccccC
Q 023686 17 NPSKKCPVCTKAVEP 31 (278)
Q Consensus 17 ~~~~~~~~c~~~~~~ 31 (278)
-|-.-|.+|++|+.+
T Consensus 6 ~PH~HC~VCg~aIp~ 20 (64)
T COG4068 6 VPHRHCVVCGKAIPP 20 (64)
T ss_pred CCCccccccCCcCCC
Confidence 355679999999954
No 67
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=38.74 E-value=33 Score=29.89 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=22.4
Q ss_pred EEecCcchHHHHhhhCCcCCCCCcCEEEeecCChh
Q 023686 56 LIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHAD 90 (278)
Q Consensus 56 LiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~D 90 (278)
+||+|.+... ..+.|++.|.++| ++..||+=+=
T Consensus 223 iIdTgGTi~~-Aa~~Lk~~GAk~V-~a~~tH~vfs 255 (314)
T COG0462 223 IIDTGGTIAK-AAKALKERGAKKV-YAAATHGVFS 255 (314)
T ss_pred cccccHHHHH-HHHHHHHCCCCeE-EEEEEchhhC
Confidence 4567766433 3345667888888 8999998543
No 68
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=37.34 E-value=70 Score=26.73 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=39.1
Q ss_pred ceEEEecCcc-hHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccCCC
Q 023686 53 RNILIDAGKF-FYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNVQR 107 (278)
Q Consensus 53 ~~iLiD~G~~-~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~~~ 107 (278)
..||+-.|.+ ....+.+.+...+..+-+.||+||.+.|=. .+......+...+|
T Consensus 2 ~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~skd~DLt-~~a~t~~lF~~ekP 56 (315)
T KOG1431|consen 2 KKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSKDADLT-NLADTRALFESEKP 56 (315)
T ss_pred ceEEEecCCchHHHHHHHHHHhcCCCCcceEEecccccccc-chHHHHHHHhccCC
Confidence 4577777776 456666777777788889999999999977 56666655554444
No 69
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=36.99 E-value=1.2e+02 Score=26.58 Aligned_cols=65 Identities=11% Similarity=0.177 Sum_probs=46.0
Q ss_pred EccEEEecCCCCCCcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEeec
Q 023686 178 FGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM 242 (278)
Q Consensus 178 i~~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~~ 242 (278)
+.++.+.++.....++..+.++++|+++..-.....+...+.-+.++.+.+++.+++++++.-.+
T Consensus 150 I~~v~l~~~~~~a~~~al~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N~~ 214 (310)
T TIGR01826 150 IDRVRLEPEDVPALREAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLM 214 (310)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHhCCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeCCC
Confidence 56888888333334568888999999998765544455556777788888888887777766543
No 70
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=36.84 E-value=56 Score=28.38 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=47.2
Q ss_pred EEccEEEec--CCCCCCcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEE
Q 023686 177 RFGNICYIS--DVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFI 239 (278)
Q Consensus 177 ~i~~v~~~g--D~~~~~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~ 239 (278)
.+.++.|.+ +..+ .++..+.++++|++++.-..+..+...+..++++.+.+++.+++++++.
T Consensus 159 ~i~~V~~~~~e~a~~-~p~vl~AI~~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vs 222 (303)
T cd07186 159 EVRDVRFVGAEEARP-APEVLEAIEDADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVAVS 222 (303)
T ss_pred CeEEEEeCCcccCCC-CHHHHHHHHhCCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEEEc
Confidence 344677777 3444 4458888999999998776666666678889999999999988888764
No 71
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=34.95 E-value=2e+02 Score=23.91 Aligned_cols=70 Identities=17% Similarity=0.276 Sum_probs=40.5
Q ss_pred hhhcccCCCEEEEcCcCCC--C----C-CCCCCCHHHHHHHHHHhCCCeEEEEeeccCCCh-hhHHHHHHHhhhhCCCc
Q 023686 194 TYPFLQDCEILIMDALRPD--R----S-SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDH-EKVNEELLKLMETEGLD 264 (278)
Q Consensus 194 ~~~~~~~~dili~e~~~~~--~----~-~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~-~~~~~~~~~~~~~~g~~ 264 (278)
+.+.++++|+.+.....+. . + .......++.++.++.++.+.+-+. -.|..+. .+-.....+.+++.|+.
T Consensus 30 v~~~l~~aD~~~~NlE~~v~~~~~~~~~~~~f~~~~~~~~~L~~~G~d~vslA-NNH~~D~G~~gl~~Tl~~L~~~gi~ 107 (250)
T PF09587_consen 30 VKPLLQSADLVVANLETPVTDSGQPASGYPHFNAPPEILDALKDAGFDVVSLA-NNHIFDYGEEGLLDTLEALDKAGIP 107 (250)
T ss_pred HHHHHhhCCEEEEEeeecCcCCCCcCCCcceecCCHHHHHHHHHcCCCEEEec-CCCCccccHHHHHHHHHHHHHCCCc
Confidence 4556778999886554321 1 1 1334556788999999998876664 1233332 22344455666666543
No 72
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=31.68 E-value=82 Score=20.77 Aligned_cols=27 Identities=30% Similarity=0.297 Sum_probs=18.5
Q ss_pred HHHHHHhhhhCCCceEEeecCeEEeecC
Q 023686 251 NEELLKLMETEGLDVQLSYDGLRVPVML 278 (278)
Q Consensus 251 ~~~~~~~~~~~g~~v~~~~dg~~i~~~~ 278 (278)
.|++.+..-+.| +.+++++|..+.+-+
T Consensus 6 LEELs~ynG~nG-paYiA~~G~VYDvS~ 32 (81)
T COG4892 6 LEELSKYNGENG-PAYIAVNGTVYDVSL 32 (81)
T ss_pred HHHHHhhcCCCC-CeEEEECCEEEeecc
Confidence 344444444455 999999999998753
No 73
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=31.57 E-value=1.9e+02 Score=23.91 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=30.5
Q ss_pred chhhcccCCCEEEEcCcCC--CC----C---CCCCCCHHHHHHHHHHhCCCeEEEE
Q 023686 193 ETYPFLQDCEILIMDALRP--DR----S---SSTHFGLPRALEEVRKIQPKRTLFI 239 (278)
Q Consensus 193 ~~~~~~~~~dili~e~~~~--~~----~---~~~H~~~~~~~~~~~~l~~~~~v~~ 239 (278)
.+.++++++|+.+.....+ .. . .+.....++.++.+++++.+.+.+.
T Consensus 25 ~v~~~~~~aD~~~~NlE~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~G~d~~~la 80 (239)
T smart00854 25 GVKPLLRAADLAIGNLETPITGSGSPASGKKYPNFRAPPENAAALKAAGFDVVSLA 80 (239)
T ss_pred HHHHHHhcCCEeEEEeeccccCCCCCCCCCCceEecCCHHHHHHHHHhCCCEEEec
Confidence 3556677899998665322 11 1 1223456788999999998877654
No 74
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=31.46 E-value=28 Score=20.43 Aligned_cols=15 Identities=47% Similarity=0.984 Sum_probs=12.5
Q ss_pred CCCCCCCcccccccc
Q 023686 16 TNPSKKCPVCTKAVE 30 (278)
Q Consensus 16 ~~~~~~~~~c~~~~~ 30 (278)
-+|++-|+.|++.++
T Consensus 5 ~lp~K~C~~C~rpf~ 19 (42)
T PF10013_consen 5 NLPSKICPVCGRPFT 19 (42)
T ss_pred cCCCCcCcccCCcch
Confidence 368899999998875
No 75
>PF14149 YhfH: YhfH-like protein
Probab=29.81 E-value=13 Score=21.13 Aligned_cols=14 Identities=50% Similarity=0.985 Sum_probs=12.4
Q ss_pred CCCCCCcccccccc
Q 023686 17 NPSKKCPVCTKAVE 30 (278)
Q Consensus 17 ~~~~~~~~c~~~~~ 30 (278)
+|.+.|+-|++.++
T Consensus 11 Lp~K~C~~CG~~i~ 24 (37)
T PF14149_consen 11 LPPKKCTECGKEIE 24 (37)
T ss_pred CCCcccHHHHHHHH
Confidence 78999999999875
No 76
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=29.24 E-value=1.6e+02 Score=24.49 Aligned_cols=52 Identities=17% Similarity=0.262 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHhC---CCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecC
Q 023686 218 HFGLPRALEEVRKIQ---PKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDG 271 (278)
Q Consensus 218 H~~~~~~~~~~~~l~---~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg 271 (278)
.++.+++++.+.++. .+.++++++++.... ....+.+.+++.|+.+.+..-|
T Consensus 55 ~~s~~ei~~~i~~~~~~~~~~V~lTGGEPll~~--~l~~li~~l~~~g~~v~leTNG 109 (238)
T TIGR03365 55 PMTAEEVWQELKALGGGTPLHVSLSGGNPALQK--PLGELIDLGKAKGYRFALETQG 109 (238)
T ss_pred cCCHHHHHHHHHHHhCCCCCeEEEeCCchhhhH--hHHHHHHHHHHCCCCEEEECCC
Confidence 477888888888765 678889998887653 2445556666677777665444
No 77
>PTZ00175 diphthine synthase; Provisional
Probab=28.96 E-value=1.5e+02 Score=25.33 Aligned_cols=25 Identities=8% Similarity=0.312 Sum_probs=17.4
Q ss_pred cCCCCCCcchhhcccCCCEEEEcCc
Q 023686 185 SDVSEIPEETYPFLQDCEILIMDAL 209 (278)
Q Consensus 185 gD~~~~~~~~~~~~~~~dili~e~~ 209 (278)
||...++....+.++++|+++.|..
T Consensus 11 Gdp~lLTlkal~~L~~ADvV~~d~~ 35 (270)
T PTZ00175 11 GDEKDITVKGLEAVKSADVVYLESY 35 (270)
T ss_pred CCHHHHHHHHHHHHHhCCEEEEecc
Confidence 4555555556677888999997774
No 78
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=28.91 E-value=56 Score=28.63 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=23.7
Q ss_pred CceEEEe----cCcchHHHHhhhCCcCCCCCcCEEEeecCCh
Q 023686 52 RRNILID----AGKFFYHSALRWFPAYGIRTIDAVIITHSHA 89 (278)
Q Consensus 52 ~~~iLiD----~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~ 89 (278)
...+++| .|.+. ....+.|++.|..+| +++.||+-+
T Consensus 218 r~viIVDDIidTG~Tl-~~aa~~Lk~~GA~~V-~~~~THgvf 257 (319)
T PRK04923 218 KTCVLVDDLVDTAGTL-CAAAAALKQRGALKV-VAYITHPVL 257 (319)
T ss_pred CEEEEEecccCchHHH-HHHHHHHHHCCCCEE-EEEEECccc
Confidence 4455554 56554 334455677888887 799999855
No 79
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=28.84 E-value=1.6e+02 Score=26.04 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=41.0
Q ss_pred hcccCCCEEEEcCcCCCCCCCCC-CCHHHHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEE
Q 023686 196 PFLQDCEILIMDALRPDRSSSTH-FGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 274 (278)
Q Consensus 196 ~~~~~~dili~e~~~~~~~~~~H-~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i 274 (278)
....++|++++|..|+....--. --..+++++-++++...+.++|- ..|. -..|-++.+-.||..+
T Consensus 178 Ala~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHD--------LdEA-----lriG~rIaimkdG~iv 244 (386)
T COG4175 178 ALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD--------LDEA-----LRIGDRIAIMKDGEIV 244 (386)
T ss_pred HHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecC--------HHHH-----HhccceEEEecCCeEE
Confidence 34457999999998874322111 12345677777777666666671 1221 2234477778888877
Q ss_pred ee
Q 023686 275 PV 276 (278)
Q Consensus 275 ~~ 276 (278)
.+
T Consensus 245 Q~ 246 (386)
T COG4175 245 QV 246 (386)
T ss_pred Ee
Confidence 64
No 80
>PF06689 zf-C4_ClpX: ClpX C4-type zinc finger; InterPro: IPR010603 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The ClpX heat shock protein of Escherichia coli is a member of the universally conserved Hsp100 family of proteins, and possesses a putative zinc finger motif of the C4 type []. This presumed zinc binding domain (ZBD) is found at the N terminus of the ClpX protein. ClpX is an ATPase which functions both as a substrate specificity component of the ClpXP protease and as a molecular chaperone. ZBD is a member of the treble clef zinc finger family, a motif known to facilitate protein-ligand, protein-DNA, and protein-protein interactions and forms a constitutive dimer that is essential for the degradation of some, but not all, ClpX substrates []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0016887 ATPase activity, 0046983 protein dimerization activity, 0006200 ATP catabolic process, 0019538 protein metabolic process; PDB: 2DS8_B 2DS6_B 2DS5_A 1OVX_A 2DS7_A.
Probab=28.58 E-value=31 Score=20.01 Aligned_cols=11 Identities=27% Similarity=0.896 Sum_probs=6.0
Q ss_pred CCCcccccccc
Q 023686 20 KKCPVCTKAVE 30 (278)
Q Consensus 20 ~~~~~c~~~~~ 30 (278)
.+|++|++..+
T Consensus 2 ~~CSFCgr~~~ 12 (41)
T PF06689_consen 2 KRCSFCGRPES 12 (41)
T ss_dssp -B-TTT--BTT
T ss_pred CCccCCCCCHH
Confidence 47999999886
No 81
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=28.27 E-value=1.8e+02 Score=21.65 Aligned_cols=37 Identities=19% Similarity=0.200 Sum_probs=15.8
Q ss_pred eEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecC
Q 023686 235 RTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDG 271 (278)
Q Consensus 235 ~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg 271 (278)
.+++.+.............+.+.++..|+.+.+..++
T Consensus 68 ~ivv~~~~Rl~R~~~~~~~~~~~l~~~gi~l~~~~~~ 104 (148)
T smart00857 68 VLVVYKLDRLGRSLRDLLALLELLEKKGVRLVSVTEG 104 (148)
T ss_pred EEEEeccchhhCcHHHHHHHHHHHHHCCCEEEECcCC
Confidence 4444444444433222223334445555555544443
No 82
>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....
Probab=28.03 E-value=65 Score=21.36 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=13.2
Q ss_pred CCCCCccccccccCCCCCcccceeEEEE
Q 023686 18 PSKKCPVCTKAVEPGNKNRRLNTSILIR 45 (278)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~~~s~li~ 45 (278)
..+.|.+|+..+.|| +.-.+|+
T Consensus 2 k~~~C~Fsg~~I~PG------~G~~~Vr 23 (71)
T PF01246_consen 2 KTEKCSFSGYKIYPG------HGKMYVR 23 (71)
T ss_dssp SSEE-TTT-SEE-SS------SSEEEE-
T ss_pred ceEEecccCCccCCC------CCeEEEe
Confidence 357899999999764 3466777
No 83
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=27.71 E-value=1e+02 Score=26.96 Aligned_cols=67 Identities=7% Similarity=0.109 Sum_probs=45.7
Q ss_pred EEccEEEecCCCCCCcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEeecc
Q 023686 177 RFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMH 243 (278)
Q Consensus 177 ~i~~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~ 243 (278)
.+.+++|.+......++..+.++++|+++..-.....+...+.-+.++.+.+++.+++++++.-...
T Consensus 152 ~I~~v~l~~~~~~~~~~a~~AI~~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N~~~ 218 (308)
T cd07187 152 PIKRVFLEPPDPKANPEALEAIEEADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICNLMT 218 (308)
T ss_pred CceEEEEECCCCCCCHHHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHhCCCCEEEEecCCC
Confidence 4447777775333345588889999999887655444555567778888888888887777654433
No 84
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=27.49 E-value=64 Score=28.33 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=20.6
Q ss_pred EecCcchHHHHhhhCCcCCCCCcCEEEeecCC
Q 023686 57 IDAGKFFYHSALRWFPAYGIRTIDAVIITHSH 88 (278)
Q Consensus 57 iD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H 88 (278)
+|.|.+. ....+.|++.|..+| +++.||+-
T Consensus 228 idTG~Tl-~~aa~~Lk~~GA~~V-~~~~tHgi 257 (323)
T PRK02458 228 LNTGKTF-AEAAKIVEREGATEI-YAVASHGL 257 (323)
T ss_pred eCcHHHH-HHHHHHHHhCCCCcE-EEEEEChh
Confidence 4556554 334456678888888 78999984
No 85
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=26.79 E-value=1.1e+02 Score=27.93 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=27.5
Q ss_pred CCCCCHHHHHHHHHHhCCCeEEEEeeccCCC
Q 023686 216 STHFGLPRALEEVRKIQPKRTLFIGMMHLMD 246 (278)
Q Consensus 216 ~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~ 246 (278)
..|....++.+++++..+.+++++|+.....
T Consensus 369 s~Had~~~l~~~i~~~~~~~v~~~Hg~~~~~ 399 (427)
T COG1236 369 SAHADGDELLEFIKDISPPKVVLVHGEPEYG 399 (427)
T ss_pred ccccCcHHHHHHHhcCCCceEEEEeCCchhh
Confidence 4699999999999999999999999876654
No 86
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=25.96 E-value=69 Score=28.07 Aligned_cols=35 Identities=23% Similarity=0.245 Sum_probs=23.0
Q ss_pred CceEEE----ecCcchHHHHhhhCCcCCCCCcCEEEeecCC
Q 023686 52 RRNILI----DAGKFFYHSALRWFPAYGIRTIDAVIITHSH 88 (278)
Q Consensus 52 ~~~iLi----D~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H 88 (278)
...++| |+|.+. ....+.|++.|...| +++.||+=
T Consensus 218 r~viIVDDIidTG~Tl-~~aa~~Lk~~GA~~V-~~~~tHgl 256 (320)
T PRK02269 218 KKCILIDDMIDTAGTI-CHAADALAEAGATEV-YASCTHPV 256 (320)
T ss_pred CEEEEEeeecCcHHHH-HHHHHHHHHCCCCEE-EEEEECcc
Confidence 445555 456554 334556677888888 79999963
No 87
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=25.33 E-value=73 Score=23.74 Aligned_cols=49 Identities=12% Similarity=0.232 Sum_probs=27.0
Q ss_pred CCCCccccccccCCCCCcccceeEEEEccCCCCCceEEEecCcchHHHHhhhCCcCCCCCcCE
Q 023686 19 SKKCPVCTKAVEPGNKNRRLNTSILIRYPGPSGRRNILIDAGKFFYHSALRWFPAYGIRTIDA 81 (278)
Q Consensus 19 ~~~~~~c~~~~~~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~ 81 (278)
...|++|+.-+.|| +.-.+|+. .++.+.| |..-..... +.+..+++|.+
T Consensus 4 ~e~CsFcG~kIyPG------~G~~fVR~----DGkvf~F-cssKC~k~f---~~kRnPRKlkW 52 (131)
T PRK14891 4 TRTCDYTGEEIEPG------TGTMFVRK----DGTVLHF-VDSKCEKNY---DLGREARDLEW 52 (131)
T ss_pred eeeecCcCCcccCC------CCcEEEec----CCCEEEE-ecHHHHHHH---HccCCCccchh
Confidence 45799999999765 33566772 3344443 443332222 22455666653
No 88
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=25.26 E-value=1.3e+02 Score=28.16 Aligned_cols=56 Identities=11% Similarity=0.018 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHHhC--CCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeecCeEE
Q 023686 215 SSTHFGLPRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 274 (278)
Q Consensus 215 ~~~H~~~~~~~~~~~~l~--~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~dg~~i 274 (278)
-.+|+.-.++++.+++++ |+++++.|+....- .+......+.+.+..+++.-.+.|
T Consensus 577 FSGHsdrrqL~~yvr~~~PkP~ki~~~HGe~sk~----~~lA~si~~~~~i~t~ap~nLeti 634 (637)
T COG1782 577 FSGHSDRRQLMKYVRRMNPKPEKILLNHGEPSKC----LDLASSIRRKFKIETYAPKNLETI 634 (637)
T ss_pred cCCCccHHHHHHHHHhcCCCCceeEeecCChHHH----HHHHHHHHhhcceeeeccccccce
Confidence 478999999999999996 57889989665432 223333334555566666555544
No 89
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=23.70 E-value=3.1e+02 Score=24.82 Aligned_cols=88 Identities=15% Similarity=0.123 Sum_probs=51.5
Q ss_pred cEEEecCCCCCCcchhhcccCCCEEEEcCcCCC------------CCCCCCCCHHHHHHHHHHh--C--CCeEEEEeecc
Q 023686 180 NICYISDVSEIPEETYPFLQDCEILIMDALRPD------------RSSSTHFGLPRALEEVRKI--Q--PKRTLFIGMMH 243 (278)
Q Consensus 180 ~v~~~gD~~~~~~~~~~~~~~~dili~e~~~~~------------~~~~~H~~~~~~~~~~~~l--~--~~~~v~~h~~~ 243 (278)
.++|+.++.....-+-...+.-|+++.|..... .....|..+..+.+++++. . .+++|++..-.
T Consensus 102 al~f~SGy~AN~~~i~~l~~~~dli~~D~lnHASiidG~rls~a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVf 181 (388)
T COG0156 102 ALLFSSGFVANLGLLSALLKKGDLIFSDELNHASIIDGIRLSRAEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVF 181 (388)
T ss_pred EEEEcccchhHHHHHHHhcCCCcEEEEechhhhhHHHHHHhCCCcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccc
Confidence 566666654433322333445788888775421 1246788887777777763 2 25667765443
Q ss_pred CCCh-hhHHHHHHHhhhhCCCceEE
Q 023686 244 LMDH-EKVNEELLKLMETEGLDVQL 267 (278)
Q Consensus 244 ~~~~-~~~~~~~~~~~~~~g~~v~~ 267 (278)
.++- -....++.+++++++..+.+
T Consensus 182 SMdGdiApL~~l~~L~~ky~a~L~V 206 (388)
T COG0156 182 SMDGDIAPLPELVELAEKYGALLYV 206 (388)
T ss_pred cCCCCcCCHHHHHHHHHHhCcEEEE
Confidence 3332 23477888888888755554
No 90
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=23.65 E-value=85 Score=19.57 Aligned_cols=22 Identities=27% Similarity=0.762 Sum_probs=16.2
Q ss_pred CCCCCccccccccCCCCCcccceeEEEE
Q 023686 18 PSKKCPVCTKAVEPGNKNRRLNTSILIR 45 (278)
Q Consensus 18 ~~~~~~~c~~~~~~~~~~~~~~~s~li~ 45 (278)
..+.|.+|+..+.|| +.-.+|+
T Consensus 2 ~~~~C~f~g~~I~PG------~G~~~Vr 23 (54)
T cd00472 2 KTEKCSFCGYKIYPG------HGKMYVR 23 (54)
T ss_pred cEEEecCcCCeecCC------CccEEEe
Confidence 356899999999865 3356677
No 91
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=23.43 E-value=71 Score=27.74 Aligned_cols=35 Identities=29% Similarity=0.519 Sum_probs=22.8
Q ss_pred CCceEEEe----cCcchHHHHhhhCCcCCCCCcCEEEeecC
Q 023686 51 GRRNILID----AGKFFYHSALRWFPAYGIRTIDAVIITHS 87 (278)
Q Consensus 51 ~~~~iLiD----~G~~~~~~~~~~l~~~~~~~Id~v~iTH~ 87 (278)
+...+|+| +|.+. ....+.|++.|..+| +++.||+
T Consensus 211 Gr~vIIVDDIidTG~Tl-~~aa~~Lk~~GA~~V-~~~~tHg 249 (301)
T PRK07199 211 GRTPVLVDDIVSTGRTL-IEAARQLRAAGAASP-DCVVVHA 249 (301)
T ss_pred CCEEEEEecccCcHHHH-HHHHHHHHHCCCcEE-EEEEEee
Confidence 34555555 45543 334556778888787 7899997
No 92
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=23.17 E-value=39 Score=32.79 Aligned_cols=76 Identities=12% Similarity=0.195 Sum_probs=53.1
Q ss_pred CCCceEEEecCcchHHHHhhhCCcCCCCCcCEEEeecCChhhhCChHHHHhhhccC-CC-CccEEeccccHHHHHhcccc
Q 023686 50 SGRRNILIDAGKFFYHSALRWFPAYGIRTIDAVIITHSHADAIGGLDDLRDWTNNV-QR-HIPIYVAMRDFEVMKKTHYY 127 (278)
Q Consensus 50 ~~~~~iLiD~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~DH~~gl~~l~~~~~~~-~~-~~~v~~~~~~~~~l~~~~~~ 127 (278)
++.+..++-||.+..+..... +..+.+++.||+|=.+++-+||++.+.-..... .+ ...+++|+.....+.....+
T Consensus 71 ~~~~~~~~n~Geg~qr~~~eh--k~~~sk~~~iflt~~~w~~~GglpGl~ltl~~~G~~g~~~l~gP~~l~~~l~~mr~f 148 (746)
T KOG2121|consen 71 DDRKRFIFNCGEGTQRLLTEH--KIKLSKLDSIFLTRVCWSSCGGLPGLLLTLADIGEPGPVVLHGPSDLNYILSAMRYF 148 (746)
T ss_pred cchhhhhhhhhHHHHHHHHHh--hhhhhhhhheEeecccHHHhCCCccceeehhhcCCCCcccccCchhHHHHHHHHHHh
Confidence 456788888898864433332 445689999999999999999999988543211 12 56688888777666654433
No 93
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=22.11 E-value=3.4e+02 Score=20.27 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=5.9
Q ss_pred HHHHhhhhCCCceEE
Q 023686 253 ELLKLMETEGLDVQL 267 (278)
Q Consensus 253 ~~~~~~~~~g~~v~~ 267 (278)
++.+++++.|+.|.+
T Consensus 48 e~v~a~h~~Girv~a 62 (132)
T PF14871_consen 48 EQVEACHERGIRVPA 62 (132)
T ss_pred HHHHHHHHCCCEEEE
Confidence 333444444443333
No 94
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=22.04 E-value=1.6e+02 Score=25.90 Aligned_cols=64 Identities=9% Similarity=0.085 Sum_probs=43.7
Q ss_pred EccEEEecCCC-CCCcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEee
Q 023686 178 FGNICYISDVS-EIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGM 241 (278)
Q Consensus 178 i~~v~~~gD~~-~~~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~ 241 (278)
+.+|+|.|.-. .-.++..+.++++|+++..-.....+.-.+..++++.+.+++..+++++..-.
T Consensus 166 v~~V~~~~~~~~~a~~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~n~ 230 (323)
T COG0391 166 VHRVRLEGPEKPSAAPEAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEALRETVAPIVYVCNL 230 (323)
T ss_pred ceEEEEecCCCCCCCHHHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHHHHhCCCCEEEeccC
Confidence 66888886322 22345788899999888766555555555777788888888876666665443
No 95
>PF11376 DUF3179: Protein of unknown function (DUF3179); InterPro: IPR021516 This family of proteins has no known function.
Probab=21.71 E-value=65 Score=27.44 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=29.8
Q ss_pred CCCCcccccccCCCCCCCcccccccc-----CCCCCcccceeEEEEccCCCCCceEEEecCcc
Q 023686 5 TSEGIPRVSCLTNPSKKCPVCTKAVE-----PGNKNRRLNTSILIRYPGPSGRRNILIDAGKF 62 (278)
Q Consensus 5 ~~~g~~~~~~~~~~~~~~~~c~~~~~-----~~~~~~~~~~s~li~~~~~~~~~~iLiD~G~~ 62 (278)
+-+|.|..== +|+.|+++.- .|.....+.+..|.. ...||.|=-.+
T Consensus 54 ~~gg~pv~vT------yCplc~s~~~f~~~v~g~~l~fgvsG~L~n------snlvmyDr~T~ 104 (266)
T PF11376_consen 54 TVGGEPVAVT------YCPLCGSGMAFDRRVDGQVLTFGVSGKLYN------SNLVMYDRETE 104 (266)
T ss_pred eeCCEEEEEE------ECccCCCceEEecccCCCcceEEeecceec------CccEEEECCCC
Confidence 3467777777 9999999875 222333444454544 46899997654
No 96
>COG0602 NrdG Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=21.28 E-value=3e+02 Score=22.48 Aligned_cols=52 Identities=19% Similarity=0.319 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHh--CCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEee
Q 023686 216 STHFGLPRALEEVRKI--QPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSY 269 (278)
Q Consensus 216 ~~H~~~~~~~~~~~~l--~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~ 269 (278)
..-++.+++++.++++ ..+.++++++++.... ....+.+..+..|+++.+..
T Consensus 53 ~~~~~~~~I~~~i~~~~~~~~~V~lTGGEP~~~~--~l~~Ll~~l~~~g~~~~lET 106 (212)
T COG0602 53 GTPMSADEILADIKSLGYKARGVSLTGGEPLLQP--NLLELLELLKRLGFRIALET 106 (212)
T ss_pred CCccCHHHHHHHHHhcCCCcceEEEeCCcCCCcc--cHHHHHHHHHhCCceEEecC
Confidence 3446778888888884 5567788888884432 24556666666676666643
No 97
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=21.13 E-value=3.8e+02 Score=20.37 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeeccCCCh---h----hHHHHHHHhhhhCCCceEEee
Q 023686 221 LPRALEEVRKIQPKRTLFIGMMHLMDH---E----KVNEELLKLMETEGLDVQLSY 269 (278)
Q Consensus 221 ~~~~~~~~~~l~~~~~v~~h~~~~~~~---~----~~~~~~~~~~~~~g~~v~~~~ 269 (278)
..++...+++++++++++.-+.|.... + ...+.+.+.++..|+.|.-+=
T Consensus 60 v~eI~~~a~kv~~~~ivlyPyAHLSs~La~P~~A~~iL~~le~~L~~~g~eV~raP 115 (138)
T PF08915_consen 60 VEEIKWVAKKVKAKRIVLYPYAHLSSSLASPDVAVEILKKLEERLKSRGFEVYRAP 115 (138)
T ss_dssp HHHHHHHHHHTT-SEEEEEE-GGGSSSB--HHHHHHHHHHHHHHHHHTT-EEEE--
T ss_pred HHHHHHHHHhcCCCEEEEeCcccccCCcCChHHHHHHHHHHHHHHHhCCCeEEEeC
Confidence 456677888999999998866665432 2 234556666667777665543
No 98
>PF08018 Antimicrobial_1: Frog antimicrobial peptide ; InterPro: IPR012520 This family includes antimicrobial peptides secreted from skins of frogs. The secretion of antimicrobial peptides from the skins of frogs plays an important role in the self defence of these frogs. Structural characterisation of these peptides showed that they belonged to four known families: the brevinin-1 family, the esculentin-2 family, the ranatuerin-2 family and the temporin family [].; GO: 0005576 extracellular region
Probab=21.10 E-value=34 Score=17.45 Aligned_cols=15 Identities=33% Similarity=0.871 Sum_probs=9.2
Q ss_pred CCCcccccccCCCCCCC
Q 023686 6 SEGIPRVSCLTNPSKKC 22 (278)
Q Consensus 6 ~~g~~~~~~~~~~~~~~ 22 (278)
+.-+|.+.|. +++||
T Consensus 10 a~~lp~i~C~--ItKKC 24 (24)
T PF08018_consen 10 ANVLPKIFCA--ITKKC 24 (24)
T ss_pred HHhcchhHhh--hcccC
Confidence 3457889994 34454
No 99
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=20.85 E-value=1.5e+02 Score=25.93 Aligned_cols=64 Identities=9% Similarity=0.142 Sum_probs=42.4
Q ss_pred EccEEEecCC-CCCCcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEee
Q 023686 178 FGNICYISDV-SEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGM 241 (278)
Q Consensus 178 i~~v~~~gD~-~~~~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~ 241 (278)
+.++.+.+.. ....++..+.++++|+++..-.....+...+..+..+.+.+++.++.++++.-.
T Consensus 151 I~~v~l~~~~~~~~~~~~l~AI~~ADlIvlgPGSlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni 215 (309)
T cd07044 151 IDRVFLTPVDEASPSREVLEAIEKADNIVIGPGSLYTSILPNISVPGIREALKKTXAKKVYVSNI 215 (309)
T ss_pred ceEEEEcCCCCCCCCHHHHHHHHhCCEEEECCCcCHHHhhhhcCcHhHHHHHHhcCCCeEEECCC
Confidence 4478887742 233445788889999999876554444555666777777777777666665443
No 100
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=20.76 E-value=93 Score=28.60 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=24.3
Q ss_pred CceEEE----ecCcchHHHHhhhCCcCCCCCcCEEEeecCChh
Q 023686 52 RRNILI----DAGKFFYHSALRWFPAYGIRTIDAVIITHSHAD 90 (278)
Q Consensus 52 ~~~iLi----D~G~~~~~~~~~~l~~~~~~~Id~v~iTH~H~D 90 (278)
...||+ |+|.+. ....+.|++.|..+| +++.||+-+.
T Consensus 336 k~vIIVDDIIdTG~Tl-~~aa~~Lk~~GA~~V-~~~~THglfs 376 (439)
T PTZ00145 336 SDVIIVDDMIDTSGTL-CEAAKQLKKHGARRV-FAFATHGLFS 376 (439)
T ss_pred CEEEEEcceeCcHHHH-HHHHHHHHHcCCCEE-EEEEEcccCC
Confidence 345554 455553 334456678888888 8999998554
No 101
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=20.59 E-value=4e+02 Score=24.96 Aligned_cols=41 Identities=12% Similarity=0.131 Sum_probs=25.8
Q ss_pred hhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHH---h---CCCeEEEEe
Q 023686 194 TYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRK---I---QPKRTLFIG 240 (278)
Q Consensus 194 ~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~---l---~~~~~v~~h 240 (278)
+...+++++++|+|. .....++.++-+++.. + ....++++|
T Consensus 152 lKaLyr~a~iLILDE------PTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITH 198 (501)
T COG3845 152 LKALYRGARLLILDE------PTAVLTPQEADELFEILRRLAAEGKTIIFITH 198 (501)
T ss_pred HHHHhcCCCEEEEcC------CcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 345567899999974 3567788776554443 3 334555666
No 102
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=20.55 E-value=46 Score=27.49 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=12.6
Q ss_pred cCChhhhCChHHHHhhh
Q 023686 86 HSHADAIGGLDDLRDWT 102 (278)
Q Consensus 86 H~H~DH~~gl~~l~~~~ 102 (278)
|+|.||+.++-.+....
T Consensus 42 HSh~~Hl~al~~~a~~~ 58 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKKQ 58 (223)
T ss_dssp S--HHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHc
Confidence 89999999888887754
No 103
>COG1810 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.13 E-value=4.2e+02 Score=21.90 Aligned_cols=69 Identities=20% Similarity=0.253 Sum_probs=33.9
Q ss_pred CcchhhcccCCCEEEEcCcCCCCCCCCCCCHHHHHHHHHHhCCCeEEEEeeccCCChhhHHHHHHHhhhhCCCceEEeec
Q 023686 191 PEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYD 270 (278)
Q Consensus 191 ~~~~~~~~~~~dili~e~~~~~~~~~~H~~~~~~~~~~~~l~~~~~v~~h~~~~~~~~~~~~~~~~~~~~~g~~v~~~~d 270 (278)
+++.++.+.++|+++.-. -|....-++....+....+.+++...... -..+++++..++.|+.+..++.
T Consensus 46 P~~~Lp~~~e~Di~va~~--------lHPDl~~~L~e~~~~~~~~alIvp~~~~~---g~rkqL~~~~~~~g~e~~~p~p 114 (224)
T COG1810 46 PEDLLPKLPEADIVVAYG--------LHPDLLLALPEKAAEGGVKALIVPAEPPE---GLRKQLKEFCEELGVEFEAPEP 114 (224)
T ss_pred HHHhcCCCCCCCEEEEec--------cCccHHHHHHHHHHhCCccEEEEecCCCh---hHHHHHHHHhhhcceeeecCCc
Confidence 344555556788887732 23333322222213333344443322211 3466777777777766655544
Done!