BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023687
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZI6|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s) Mutant- 1.7 A
Length = 236
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 47 IQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDL 103
I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ PDL
Sbjct: 6 ISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCPDL 63
Query: 104 YRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGVTG 150
Y + LD +A L D V D+ A++ + + +NG KVG+ G
Sbjct: 64 YARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNG--KVGLVG 121
Query: 151 YCMGGALAIASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFVGFSDVK 209
Y +GGALA + VD V +YGV +L + K P H G D+FV +
Sbjct: 122 YSLGGALAFLVAA-KGYVDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQ 180
Query: 210 TXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDG 244
+VH Y + H+F S G
Sbjct: 181 LITEGFGANPL----LQVHWYEEAGHSFARTSSSG 211
>pdb|1DIN|A Chain A, Dienelactone Hydrolase At 2.8 Angstroms
Length = 234
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 95/218 (43%), Gaps = 27/218 (12%)
Query: 45 KKIQIQR-DDTTFDAYVV--GKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIP 101
+ I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ P
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCP 61
Query: 102 DLYRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGV 148
DLY + LD +A L D V D+ A++ + + +NG KVG+
Sbjct: 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNG--KVGL 119
Query: 149 TGY-CMGGALAIASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFVGFS 206
GY C+GGALA + VD V +YGV +L + K P H G D+FV
Sbjct: 120 VGYXCLGGALAFLVAA-KGYVDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFVPAP 178
Query: 207 DVKTXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDG 244
+ +VH Y + H+F S G
Sbjct: 179 SRQLITEGFGANPL----LQVHWYEEAGHSFARTSSSG 212
>pdb|1ZIC|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s, R206a) Mutant- 1.7 A
Length = 236
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 22/174 (12%)
Query: 47 IQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDL 103
I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ PDL
Sbjct: 6 ISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCPDL 63
Query: 104 YRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGVTG 150
Y + LD +A L D V D+ A++ + + +NG KVG+ G
Sbjct: 64 YARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNG--KVGLVG 121
Query: 151 YCMGGALAIASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFV 203
Y +GGALA + VD V +YGV +L + K P H G D+FV
Sbjct: 122 YSLGGALAFLVAA-KGYVDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFV 174
>pdb|1ZIY|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (C123s) Bound With The Pms Moiety Of The Protease
Inhibitor, Phenylmethylsulfonyl Fluoride (Pmsf)- 1.9 A
Length = 236
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 47 IQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDL 103
I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ PDL
Sbjct: 6 ISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCPDL 63
Query: 104 YRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGVTG 150
Y + LD +A L D V D+ A++ + + +NG KVG+ G
Sbjct: 64 YARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNG--KVGLVG 121
Query: 151 YCMGGALAIASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFVGFSDVK 209
Y +GGALA + VD V +YGV +L + K P H G D+FV +
Sbjct: 122 YXLGGALAFLVAA-KGYVDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQ 180
Query: 210 TXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDG 244
+VH Y + H+F S G
Sbjct: 181 LITEGFGANPL----LQVHWYEEAGHSFARTSSSG 211
>pdb|1GGV|A Chain A, Crystal Structure Of The C123s Mutant Of Dienelactone
Hydrolase (Dlh) Bound With The Pms Moiety Of The
Protease Inhibitor, Phenylmethylsulfonyl Fluoride (Pmsf)
Length = 232
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 83/176 (47%), Gaps = 22/176 (12%)
Query: 45 KKIQIQR-DDTTFDAYVV--GKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIP 101
+ I IQ D TF A V K AP IV+ QE +GV+ ++ + ++ G+ A+ P
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQEIFGVNAFMRETVSWL--VDQGYAAVCP 61
Query: 102 DLYRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGV 148
DLY + LD +A L D V D+ A++ + + +NG KVG+
Sbjct: 62 DLYARQAPGTALDPQDEAQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNG--KVGL 119
Query: 149 TGYCMGGALAIASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFV 203
GY +GGALA + VD V +YGV +L + K P H G D+FV
Sbjct: 120 VGYXLGGALAFLVAA-KGYVDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFV 174
>pdb|1ZIX|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, R105h, C123s, G211d, K234n)- 1.8 A
Length = 236
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/176 (31%), Positives = 84/176 (47%), Gaps = 22/176 (12%)
Query: 45 KKIQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIP 101
+ I IQ D TF A V K AP IV+ Q+ +GV+ ++ + ++ G+ A+ P
Sbjct: 4 EGISIQSYDGHTFGALVGSPAKAPAPVIVIAQDIFGVNAFMRETVSWL--VDQGYAAVCP 61
Query: 102 DLYRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGV 148
DLY + LD +A L D V D+ A++++ + +NG KVG+
Sbjct: 62 DLYARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIHYARHQPYSNG--KVGL 119
Query: 149 TGYCMGGALAIASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFV 203
GY +GGALA + VD V +YGV +L + K P H G D+FV
Sbjct: 120 VGYSLGGALAFLVAA-KGYVDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFV 174
>pdb|1ZI8|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant(E36d, C123s, A134s, S208g, A229v, K234r)- 1.4 A
Length = 236
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 26/176 (14%)
Query: 47 IQIQR-DDTTFDAYVV--GKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDL 103
I IQ D TF A V K AP IV+ Q+ +GV+ ++ + ++ G+ A+ PDL
Sbjct: 6 ISIQSYDGHTFGALVGSPAKAPAPVIVIAQDIFGVNAFMRETVSWL--VDQGYAAVCPDL 63
Query: 104 YRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGVTG 150
Y + LD +A L D V D+ A++ + + +NG KVG+ G
Sbjct: 64 YARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNG--KVGLVG 121
Query: 151 YCMGGALA--IASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFV 203
Y +GGALA +AS VD V +YGV +L + K P H G D+FV
Sbjct: 122 YSLGGALAFLVASKGY---VDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFV 174
>pdb|1ZI9|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(e36d, C123s) Mutant- 1.5 A
Length = 236
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 47 IQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDL 103
I IQ D TF A V K AP IV+ Q+ +GV+ ++ + ++ G+ A+ PDL
Sbjct: 6 ISIQSYDGHTFGALVGSPAKAPAPVIVIAQDIFGVNAFMRETVSWL--VDQGYAAVCPDL 63
Query: 104 YRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGVTG 150
Y + LD +A L D V D+ A++ + + +NG KVG+ G
Sbjct: 64 YARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNG--KVGLVG 121
Query: 151 YCMGGALAIASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFVGFSDVK 209
Y +GGALA + VD V +YGV +L + K P H G D+FV +
Sbjct: 122 YSLGGALAFLVAA-KGYVDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQ 180
Query: 210 TXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDG 244
+VH Y + H+F S G
Sbjct: 181 LITEGFGANPL----LQVHWYEEAGHSFARTSSSG 211
>pdb|1ZJ4|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, C123s) Bound With The Pms Moiety Of The
Protease Inhibitor, Phenylmethylsulfonyl Fluoride
(Pmsf)- 1.7 A
Length = 236
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 63/215 (29%), Positives = 93/215 (43%), Gaps = 26/215 (12%)
Query: 47 IQIQR-DDTTFDAYV--VGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDL 103
I IQ D TF A V K AP IV+ Q+ +GV+ ++ + ++ G+ A+ PDL
Sbjct: 6 ISIQSYDGHTFGALVGSPAKAPAPVIVIAQDIFGVNAFMRETVSWL--VDQGYAAVCPDL 63
Query: 104 YRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGVTG 150
Y + LD +A L D V D+ A++ + + +NG KVG+ G
Sbjct: 64 YARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNG--KVGLVG 121
Query: 151 YCMGGALAIASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFVGFSDVK 209
Y +GGALA + VD V +YGV +L + K P H G D+FV +
Sbjct: 122 YXLGGALAFLVAA-KGYVDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFVPAPSRQ 180
Query: 210 TXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDG 244
+VH Y + H+F S G
Sbjct: 181 LITEGFGANPL----LQVHWYEEAGHSFARTSSSG 211
>pdb|1ZJ5|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, C123s, A134s, S208g, A229v, K234r) Bound
With The Pms Moiety Of The Protease Inhibitor,
Phenylmethylsulfonyl Fluoride (Pmsf)- 1.7 A
Length = 236
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 84/176 (47%), Gaps = 26/176 (14%)
Query: 47 IQIQR-DDTTFDAYVV--GKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDL 103
I IQ D TF A V K AP IV+ Q+ +GV+ ++ + ++ G+ A+ PDL
Sbjct: 6 ISIQSYDGHTFGALVGSPAKAPAPVIVIAQDIFGVNAFMRETVSWL--VDQGYAAVCPDL 63
Query: 104 YRGK---VGLD------TAEAQHLMSGLDWPGAVKDIHASVNWLK----ANGSKKVGVTG 150
Y + LD +A L D V D+ A++ + + +NG KVG+ G
Sbjct: 64 YARQAPGTALDPQDERQREQAYKLWQAFDMEAGVGDLEAAIRYARHQPYSNG--KVGLVG 121
Query: 151 YCMGGALA--IASSVLVPEVDAVVSFYGVP-PPELADPTQAKAPVQAHFGELDNFV 203
Y +GGALA +AS VD V +YGV +L + K P H G D+FV
Sbjct: 122 YXLGGALAFLVASKGY---VDRAVGYYGVGLEKQLNKVPEVKHPALFHMGGQDHFV 174
>pdb|3F67|A Chain A, Crystal Structure Of Putative Dienelactone Hydrolase From
Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578
Length = 241
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 32/225 (14%)
Query: 67 PGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGLDTAEA-----QHLMSG 121
P ++VVQE +GV I++ +++Q G+ A+ P+LY + + + L+S
Sbjct: 33 PIVIVVQEIFGVHEHIRDLCRRLAQ--EGYLAIAPELYFRQGDPNEYHDIPTLFKELVSK 90
Query: 122 LDWPGAVKDIHASVNWLKANG--SKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYG--V 177
+ + D+ +W +G + ++ +TG+C GG + + P++ A V++YG V
Sbjct: 91 VPDAQVLADLDHVASWAARHGGDAHRLLITGFCWGGRITWLYAAHNPQLKAAVAWYGKLV 150
Query: 178 PPPELADPTQ-------AKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXXSGVPYEVHIY 230
L P APV +G D + V+T + E+ +Y
Sbjct: 151 GEKSLNSPKHPVDIAVDLNAPVLGLYGAKDASIPQDTVETXRQALRAANATA---EIVVY 207
Query: 231 PGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRY 275
P + HAF + H+ +A + W R +W +Y
Sbjct: 208 PEADHAF----------NADYRASYHEESAKD-GWQRXLAWFAQY 241
>pdb|1QGE|D Chain D, New Crystal Form Of Pseudomonas Glumae (Formerly
Chromobacterium Viscosum Atcc 6918) Lipase
Length = 222
Score = 30.8 bits (68), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 71 VVQEWWGVDFEIKNHAVKISQLN-PGFKALIPDLYRGKVGLDTAEAQHLMSGLDWPGAVK 129
VV W+G+ ++++H K+ N GF++ D G+ + L++ VK
Sbjct: 26 VVDYWYGIQSDLQSHGAKVYVANLSGFQS--DDGPNGR-------GEQLLA------YVK 70
Query: 130 DIHASVNWLKANGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVP--PPELADPTQ 187
+ L A G+ KV + G+ GG + + + P++ A V+ G P E AD Q
Sbjct: 71 QV------LAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTPHRGSEFADFVQ 124
>pdb|1TAH|B Chain B, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|A Chain A, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|C Chain C, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
pdb|1TAH|D Chain D, The Crystal Structure Of Triacylglycerol Lipase From
Pseudomonas Glumae Reveals A Partially Redundant
Catalytic Aspartate
Length = 318
Score = 30.8 bits (68), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 71 VVQEWWGVDFEIKNHAVKISQLN-PGFKALIPDLYRGKVGLDTAEAQHLMSGLDWPGAVK 129
VV W+G+ ++++H K+ N GF++ D G+ + L++ VK
Sbjct: 25 VVDYWYGIQSDLQSHGAKVYVANLSGFQS--DDGPNGR-------GEQLLA------YVK 69
Query: 130 DIHASVNWLKANGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVP--PPELADPTQ 187
+ L A G+ KV + G+ GG + + + P++ A V+ G P E AD Q
Sbjct: 70 QV------LAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTPHRGSEFADFVQ 123
>pdb|2ES4|A Chain A, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|2ES4|B Chain B, Crystal Structure Of The Burkholderia Glumae Lipase-
Specific Foldase In Complex With Its Cognate Lipase
pdb|1CVL|A Chain A, Crystal Structure Of Bacterial Lipase From Chromobacterium
Viscosum Atcc 6918
Length = 319
Score = 30.8 bits (68), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 54/120 (45%), Gaps = 24/120 (20%)
Query: 71 VVQEWWGVDFEIKNHAVKISQLN-PGFKALIPDLYRGKVGLDTAEAQHLMSGLDWPGAVK 129
VV W+G+ ++++H K+ N GF++ D G+ + L++ VK
Sbjct: 26 VVDYWYGIQSDLQSHGAKVYVANLSGFQS--DDGPNGR-------GEQLLA------YVK 70
Query: 130 DIHASVNWLKANGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVP--PPELADPTQ 187
+ L A G+ KV + G+ GG + + + P++ A V+ G P E AD Q
Sbjct: 71 QV------LAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTTIGTPHRGSEFADFVQ 124
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 30.4 bits (67), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 144 KKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNF 202
+K + G GG LAIA+++ E VD +V V D T+ V + ++N
Sbjct: 95 EKAHIVGNSFGGGLAIATALRYSERVDRMVLMGAVGTR--FDVTEGLNAVWGYTPSIENM 152
Query: 203 VGFSDVKTXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDGVKR 247
D+ + + YE I PG +F ++ P+ +R
Sbjct: 153 RNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQR 197
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 3/105 (2%)
Query: 144 KKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNF 202
+K + G GG LAIA+++ E VD +V G D T+ V + ++N
Sbjct: 95 EKAHIVGNAFGGGLAIATALRYSERVDRMV-LMGAAGTRF-DVTEGLNAVWGYTPSIENM 152
Query: 203 VGFSDVKTXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDGVKR 247
D+ + + YE I PG +F ++ P+ +R
Sbjct: 153 RNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPEPRQR 197
>pdb|4FHZ|A Chain A, Crystal Structure Of A Carboxyl Esterase At 2.0 Angstrom
Resolution
Length = 285
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 144 KKVGVTGYCMGGALAI-ASSVLVPEVDAVVSFYG--VPPPELADPTQAKAPVQAHFGELD 200
+ + + G+ G +A+ + E+ +V F G + P LA+ ++K PV G+ D
Sbjct: 157 EALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLAPERLAEEARSKPPVLLVHGDAD 216
Query: 201 NFVGFSDVKTXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDGV 245
V F+D+ +G H+ G+ H I+PDG+
Sbjct: 217 PVVPFADMSL---AGEALAEAGFTTYGHVMKGTGH---GIAPDGL 255
>pdb|3FCY|A Chain A, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|B Chain B, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
pdb|3FCY|C Chain C, Crystal Structure Of Acetyl Xylan Esterase 1 From
Thermoanaerobacterium Sp. JwSL YS485
Length = 346
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 145 KVGVTGYCMGGALAIASSVLVPEVDAVVSFY 175
+VGV G GG L++A + L P V VVS Y
Sbjct: 201 RVGVMGPSQGGGLSLACAALEPRVRKVVSEY 231
>pdb|4FTW|A Chain A, Crystal Structure Of A Carboxyl Esterase N110cL145H AT 2.3
ANGSTROM Resolution
Length = 285
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 144 KKVGVTGYCMGGALAI-ASSVLVPEVDAVVSFYG--VPPPELADPTQAKAPVQAHFGELD 200
+ + + G+ G +A+ + E+ +V F G + P LA+ ++K PV G+ D
Sbjct: 157 EALALVGFSQGTMMALHVAPRRAEEIAGIVGFSGRLLAPERLAEEARSKPPVLLVHGDAD 216
Query: 201 NFVGFSDVKTXXXXXXXXXXSGVPYEVHIYPGSAHAFMNISPDGV 245
V F+D+ +G H+ G+ H I+PDG+
Sbjct: 217 PVVPFADMSL---AGEALAEAGFTTYGHVMKGTGH---GIAPDGL 255
>pdb|3QH4|A Chain A, Crystal Structure Of Esterase Lipw From Mycobacterium
Marinum
Length = 317
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 221 SGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDH 256
+GV E+HI+P + H F ++ P+ ++ M H
Sbjct: 274 AGVSTELHIFPRACHGFDSLLPEWTTSQRLFAMQGH 309
>pdb|2O2E|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2E|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta
Subunit Dimer (Apoform)
pdb|2O2J|A Chain A, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
pdb|2O2J|B Chain B, Mycobacterium Tuberculosis Tryptophan Synthase Beta Chain
Dimer (Apoform)
Length = 422
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 65 DAPGIVVVQ-EWWGVDFEIKNHAVKISQLNPG-FKALIPDLYRGKVGLDTAEAQHLMSGL 122
D PG+ +V E G E HA + +PG F L + + G T E+ + +GL
Sbjct: 272 DDPGVRLVGFEAAGDGVETGRHAATFTAGSPGAFHGSFSYLLQDEDG-QTIESHSISAGL 330
Query: 123 DWPGAVKDIHASVNWLKANG 142
D+PG V HA WLK G
Sbjct: 331 DYPG-VGPEHA---WLKEAG 346
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 65/170 (38%), Gaps = 26/170 (15%)
Query: 58 AYVVGKEDAPGIVVVQEWWGVDFEIKNHAVKISQLNPGFKALIPDLYRGKVGLDTAEAQH 117
A V G +P +V++ N I L F + PDL +G +E
Sbjct: 21 ALVAGDPQSPAVVLLHGAGPGAHAASNWRPIIPDLAENFFVVAPDL----IGFGQSEYPE 76
Query: 118 LMSG--LDWPGA-VKDIHASVNWLKANGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSF 174
G + W G V+ I +N G +K + G MGGA+ + V PE V+
Sbjct: 77 TYPGHIMSWVGMRVEQILGLMNHF---GIEKSHIVGNSMGGAVTLQLVVEAPERFDKVAL 133
Query: 175 YG-------VPPPEL-------ADP--TQAKAPVQAHFGELDNFVGFSDV 208
G PPEL ADP T + + + + +NF G ++
Sbjct: 134 MGSVGAPMNARPPELARLLAFYADPRLTPYRELIHSFVYDPENFPGMEEI 183
>pdb|1EVQ|A Chain A, The Crystal Structure Of The Thermophilic Carboxylesterase
Est2 From Alicyclobacillus Acidocaldarius
Length = 310
Score = 27.7 bits (60), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 124 WPGAVKDIHASVNWLKANGSK------KVGVTGYCMGGALAIASSVLVPE 167
+P AV+D + ++ W+ + ++ V G GG LA +S+L E
Sbjct: 121 FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKE 170
>pdb|2HM7|A Chain A, Crystal Structure Analysis Of The G84s Est2 Mutant
Length = 310
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 124 WPGAVKDIHASVNWLKANGSK------KVGVTGYCMGGALAIASSVLVPE 167
+P AV+D + ++ W+ + ++ V G GG LA +S+L E
Sbjct: 121 FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKE 170
>pdb|1QZ3|A Chain A, Crystal Structure Of Mutant M211sR215L OF CARBOXYLESTERASE
Est2 Complexed With Hexadecanesulfonate
pdb|1U4N|A Chain A, Crystal Structure Analysis Of The M211sR215L EST2 MUTANT
Length = 310
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 124 WPGAVKDIHASVNWLKANGSK------KVGVTGYCMGGALAIASSVLVPE 167
+P AV+D + ++ W+ + ++ V G GG LA +S+L E
Sbjct: 121 FPAAVEDAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVTSILAKE 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,610,019
Number of Sequences: 62578
Number of extensions: 350319
Number of successful extensions: 694
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 35
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)