Your job contains 1 sequence.
>023688
MSQQRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKN
TGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRP
APGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQFSPY
YGTGSSGSPGMFHNFYPFYAQYAQSSQAQGFGVHYPQMLQYGPFLPHHYGTAGILSLPTS
MPATTSSTGVTTTTIGVTGTGTSALQASATASEQNSST
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 023688
(278 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2044370 - symbol:AT2G46780 species:3702 "Arabi... 689 3.3e-71 2
TAIR|locus:2006998 - symbol:AT1G33470 species:3702 "Arabi... 493 4.2e-47 1
TAIR|locus:2037370 - symbol:AT1G20880 species:3702 "Arabi... 465 3.9e-44 1
TAIR|locus:2011726 - symbol:AT1G76460 species:3702 "Arabi... 453 7.3e-43 1
TAIR|locus:2017779 - symbol:AT1G22910 species:3702 "Arabi... 433 9.6e-41 1
TAIR|locus:2196521 - symbol:AT1G22330 species:3702 "Arabi... 397 6.3e-37 1
TAIR|locus:2032120 - symbol:AT1G78260 species:3702 "Arabi... 396 8.0e-37 1
TAIR|locus:2102435 - symbol:ARP1 "ABA-regulated RNA-bindi... 347 1.3e-31 1
UNIPROTKB|A5GFN8 - symbol:RNPC1 "Uncharacterized protein"... 303 1.6e-30 2
UNIPROTKB|E1BLB7 - symbol:RBM38 "Uncharacterized protein"... 303 2.6e-30 2
UNIPROTKB|Q9I8B3 - symbol:rbm24-b "RNA-binding protein 24... 322 5.6e-29 1
ZFIN|ZDB-GENE-030131-5923 - symbol:rbm38 "RNA binding mot... 318 1.5e-28 1
UNIPROTKB|Q9H0Z9 - symbol:RBM38 "RNA-binding protein 38" ... 317 1.9e-28 1
UNIPROTKB|Q6GQD3 - symbol:rbm24-a "RNA-binding protein 24... 315 3.1e-28 1
UNIPROTKB|Q5ZMA3 - symbol:RBM24 "RNA-binding protein 24" ... 312 6.4e-28 1
UNIPROTKB|Q6P8A7 - symbol:rbm24 "RNA-binding protein 24" ... 311 8.2e-28 1
UNIPROTKB|A6QPJ1 - symbol:RBM24 "Uncharacterized protein"... 309 1.3e-27 1
UNIPROTKB|Q9BX46 - symbol:RBM24 "RNA-binding protein 24" ... 309 1.3e-27 1
UNIPROTKB|F1RUJ2 - symbol:RBM24 "Uncharacterized protein"... 309 1.3e-27 1
ZFIN|ZDB-GENE-040628-1 - symbol:rbm24a "RNA binding motif... 309 1.3e-27 1
TAIR|locus:4515103555 - symbol:AT5G11412 species:3702 "Ar... 307 2.2e-27 1
UNIPROTKB|E1BZ17 - symbol:RBM24 "RNA-binding protein 24" ... 306 2.8e-27 1
MGI|MGI:3610364 - symbol:Rbm24 "RNA binding motif protein... 306 2.8e-27 1
RGD|1584029 - symbol:Rbm24 "RNA binding motif protein 24"... 306 2.8e-27 1
MGI|MGI:1889294 - symbol:Rbm38 "RNA binding motif protein... 305 3.5e-27 1
RGD|1308503 - symbol:Rbm38 "RNA binding motif protein 38"... 305 3.5e-27 1
UNIPROTKB|A5GFN7 - symbol:RNPC1 "Uncharacterized protein"... 303 5.7e-27 1
UNIPROTKB|Q5ZJX4 - symbol:RBM38 "RNA-binding protein 38" ... 301 9.4e-27 1
UNIPROTKB|F6VZ39 - symbol:RBM38 "RNA-binding protein 38" ... 301 9.4e-27 1
ZFIN|ZDB-GENE-060312-43 - symbol:rbm24b "RNA binding moti... 298 1.9e-26 1
WB|WBGene00006321 - symbol:sup-12 species:6239 "Caenorhab... 296 3.2e-26 1
UNIPROTKB|O45189 - symbol:sup-12 "Protein SUP-12, isoform... 296 3.2e-26 1
TAIR|locus:2164042 - symbol:AT5G53680 species:3702 "Arabi... 280 1.6e-24 1
TAIR|locus:2077577 - symbol:AT3G06970 species:3702 "Arabi... 279 2.0e-24 1
TAIR|locus:2164082 - symbol:AT5G53720 species:3702 "Arabi... 249 3.0e-21 1
UNIPROTKB|E2RM01 - symbol:RBM24 "Uncharacterized protein"... 241 2.1e-20 1
UNIPROTKB|F1NTG9 - symbol:DAZAP1 "Uncharacterized protein... 198 9.5e-20 2
UNIPROTKB|E1BAK6 - symbol:DAZAP1 "Uncharacterized protein... 196 1.2e-19 2
UNIPROTKB|I3LB68 - symbol:DAZAP1 "Uncharacterized protein... 196 1.4e-19 2
UNIPROTKB|E2R6E4 - symbol:DAZAP1 "Uncharacterized protein... 196 1.4e-19 2
MGI|MGI:1917498 - symbol:Dazap1 "DAZ associated protein 1... 196 2.9e-19 2
UNIPROTKB|F2Z3S1 - symbol:Dazap1 "Protein Dazap1" species... 196 2.9e-19 2
RGD|1305280 - symbol:Dazap1 "DAZ associated protein 1" sp... 195 3.7e-19 2
UNIPROTKB|Q96EP5 - symbol:DAZAP1 "DAZ-associated protein ... 196 3.8e-19 2
UNIPROTKB|Q98SJ2 - symbol:dazap1 "DAZ-associated protein ... 191 8.2e-19 2
ZFIN|ZDB-GENE-070212-1 - symbol:dazap1 "DAZ associated pr... 193 1.8e-17 2
UNIPROTKB|F1PA19 - symbol:HNRNPAB "Uncharacterized protei... 172 2.9e-17 2
TAIR|locus:2086325 - symbol:AT3G15010 species:3702 "Arabi... 185 3.3e-17 2
TAIR|locus:2055956 - symbol:UBA1A species:3702 "Arabidops... 212 4.5e-17 1
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 193 4.5e-17 2
TAIR|locus:2129590 - symbol:AT4G14300 species:3702 "Arabi... 177 1.1e-16 2
UNIPROTKB|Q99729 - symbol:HNRNPAB "Heterogeneous nuclear ... 174 1.5e-16 2
UNIPROTKB|E2R771 - symbol:RBM3 "Uncharacterized protein" ... 200 4.7e-16 1
DICTYBASE|DDB_G0275971 - symbol:DDB_G0275971 "RNA recogni... 173 1.4e-15 3
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 194 2.0e-15 1
TAIR|locus:2050992 - symbol:AT2G33410 species:3702 "Arabi... 172 3.0e-15 2
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 190 5.4e-15 1
ZFIN|ZDB-GENE-040426-2516 - symbol:zgc:77052 "zgc:77052" ... 190 8.3e-15 1
UNIPROTKB|H0YA61 - symbol:RBM24 "RNA-binding protein 24" ... 187 1.1e-14 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 162 1.2e-14 2
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 188 1.4e-14 1
RGD|620145 - symbol:Rbm3 "RNA binding motif (RNP1, RRM) p... 186 1.4e-14 1
UNIPROTKB|K7EQ02 - symbol:DAZAP1 "DAZ-associated protein ... 185 1.8e-14 1
UNIPROTKB|J9P972 - symbol:DAZAP1 "Uncharacterized protein... 185 1.8e-14 1
UNIPROTKB|F6RBQ9 - symbol:F6RBQ9 "Uncharacterized protein... 185 1.8e-14 1
UNIPROTKB|G3V6P6 - symbol:Rbm3 "Putative RNA-binding prot... 185 1.8e-14 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 184 2.3e-14 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 184 2.3e-14 1
UNIPROTKB|I3LQ36 - symbol:I3LQ36 "Uncharacterized protein... 183 3.0e-14 1
TAIR|locus:2047685 - symbol:AT2G19380 species:3702 "Arabi... 179 3.6e-14 2
UNIPROTKB|Q5ZME1 - symbol:HNRNPA2B1 "Uncharacterized prot... 164 4.4e-14 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 189 4.5e-14 1
UNIPROTKB|J3QKT5 - symbol:MSI2 "RNA-binding protein Musas... 181 4.9e-14 1
UNIPROTKB|P98179 - symbol:RBM3 "Putative RNA-binding prot... 181 4.9e-14 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 180 6.2e-14 1
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 180 6.2e-14 1
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 187 6.8e-14 1
UNIPROTKB|Q96DH6 - symbol:MSI2 "RNA-binding protein Musas... 182 9.3e-14 1
TAIR|locus:2063177 - symbol:AT2G41060 species:3702 "Arabi... 185 1.1e-13 1
MGI|MGI:1923876 - symbol:Msi2 "musashi RNA-binding protei... 182 1.1e-13 1
UNIPROTKB|I3L5X7 - symbol:RBM3 "Uncharacterized protein" ... 177 1.3e-13 1
TAIR|locus:2103670 - symbol:UBA2A "UBP1-associated protei... 184 1.6e-13 1
UNIPROTKB|H0YHB7 - symbol:MSI1 "RNA-binding protein Musas... 176 1.6e-13 1
MGI|MGI:1099460 - symbol:Rbm3 "RNA binding motif protein ... 176 1.6e-13 1
FB|FBgn0260943 - symbol:Rbp6 "RNA-binding protein 6" spec... 181 1.8e-13 1
UNIPROTKB|F1NIB2 - symbol:HNRNPAB "Uncharacterized protei... 175 2.1e-13 1
UNIPROTKB|F1NIB4 - symbol:HNRNPAB "Uncharacterized protei... 175 2.1e-13 1
UNIPROTKB|B4DM51 - symbol:MSI2 "RNA-binding protein Musas... 175 2.1e-13 1
TAIR|locus:2173967 - symbol:AT5G55550 species:3702 "Arabi... 182 2.4e-13 1
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 178 2.5e-13 1
MGI|MGI:1330294 - symbol:Hnrnpab "heterogeneous nuclear r... 175 3.0e-13 1
UNIPROTKB|Q9QX80 - symbol:Hnrnpab "Hnrpab protein" specie... 175 3.0e-13 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 173 3.4e-13 1
UNIPROTKB|D6R9P3 - symbol:HNRNPAB "Heterogeneous nuclear ... 174 3.5e-13 1
UNIPROTKB|D6RD18 - symbol:HNRNPAB "Heterogeneous nuclear ... 174 3.8e-13 1
RGD|69255 - symbol:Hnrnpab "heterogeneous nuclear ribonuc... 175 3.8e-13 1
UNIPROTKB|Q3ZC44 - symbol:HNRNPAB "Uncharacterized protei... 174 4.0e-13 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 180 4.7e-13 1
ZFIN|ZDB-GENE-030131-185 - symbol:hnrnpab "heterogeneous ... 177 4.9e-13 1
UNIPROTKB|B4DHE8 - symbol:MSI2 "RNA-binding protein Musas... 175 5.4e-13 1
WARNING: Descriptions of 752 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2044370 [details] [associations]
symbol:AT2G46780 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT022057
IPI:IPI00944264 RefSeq:NP_182201.4 UniGene:At.22279
ProteinModelPortal:Q501B0 SMR:Q501B0 PRIDE:Q501B0
EnsemblPlants:AT2G46780.1 GeneID:819291 KEGG:ath:AT2G46780
TAIR:At2g46780 OMA:FPYSTYG PhylomeDB:Q501B0 ProtClustDB:CLSN2722623
Genevestigator:Q501B0 Uniprot:Q501B0
Length = 336
Score = 689 (247.6 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 141/210 (67%), Positives = 157/210 (74%)
Query: 1 MSQQRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKN 60
M+QQR QM GGN+ + DT TKIFVGGLAWETQRDTMRRYFEQFGEI+EAVVITDKN
Sbjct: 1 MAQQRQFQMEGGNN--NTTDTKLTKIFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKN 58
Query: 61 TGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPT-PQHGGGRFR 119
TGRSKGYGFVTFK+ EAAMRACQN +PVIDGRRANCNLA LGA K RPPT P+HG GRFR
Sbjct: 59 TGRSKGYGFVTFKEAEAAMRACQNMNPVIDGRRANCNLACLGAQKPRPPTSPRHGTGRFR 118
Query: 120 -PAPG--LVAP-PAYHGGFSSS-YVHQP----TGQYTFPYSAYGYTGYSQDTMYALNYYN 170
P G LVAP P + G SSS +VHQ T Q+ FPYS YG++GYSQ+ MY +NYYN
Sbjct: 119 SPGSGVGLVAPSPQFRGSSSSSAFVHQQQQQHTAQFPFPYSTYGFSGYSQEGMYPMNYYN 178
Query: 171 --IYGGQQFXXXXXXXXXXXXXMFHNFYPF 198
+YGGQQF MFH FYP+
Sbjct: 179 HHLYGGQQFSPYMGHPSAGSTGMFHGFYPY 208
Score = 50 (22.7 bits), Expect = 3.3e-71, Sum P(2) = 3.3e-71
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 210 GFGVHY-----PQMLQYGPFLPH--HYGTAG----------ILSLPTSM 241
GF Y P +LQY P+LPH H+ + ILSLPTS+
Sbjct: 232 GFSFQYTAPPAPPLLQY-PYLPHQPHFSSQQQFSSQQPPPPILSLPTSL 279
>TAIR|locus:2006998 [details] [associations]
symbol:AT1G33470 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AK176398 IPI:IPI00533784
RefSeq:NP_174613.2 UniGene:At.17522 UniGene:At.67846
ProteinModelPortal:Q67YS0 SMR:Q67YS0 PaxDb:Q67YS0 PRIDE:Q67YS0
EnsemblPlants:AT1G33470.1 GeneID:840240 KEGG:ath:AT1G33470
TAIR:At1g33470 InParanoid:Q67YS0 OMA:GAQYPFY PhylomeDB:Q67YS0
ProtClustDB:CLSN2680737 ArrayExpress:Q67YS0 Genevestigator:Q67YS0
Uniprot:Q67YS0
Length = 245
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 107/238 (44%), Positives = 142/238 (59%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTTFTK+FVGGLAWET + ++R YFEQFG+I+EAVVITDK++GRSKGYGFVTF DPEAA
Sbjct: 3 DTTFTKVFVGGLAWETHKVSLRNYFEQFGDIVEAVVITDKSSGRSKGYGFVTFCDPEAAQ 62
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG--GGRFRPAPGLVAPPAYHGGFSSS 137
+AC +P+PVIDGRRANCNLA+ G +++P +P HG GGR + +P H G +++
Sbjct: 63 KACVDPAPVIDGRRANCNLAAFGVQRSKPSSPIHGHVGGR---GMKVTSPFKTHFGTAAT 119
Query: 138 YVHQPT--GQYTFPYS-AYGYTGYSQDTMYAL-NYYNIYGG---QQFXXXXXXXXXXXXX 190
+ P YT PY+ +G++ YS D Y +YYN+YGG Q
Sbjct: 120 AIPSPLPFSHYTLPYTNPFGFSSYSMDYNYPTQSYYNVYGGATAQHPMYGSGPMTGVAAA 179
Query: 191 MFHNFYPFXXXXXXXXXXXGFG-VHYPQ-MLQY---GPFLPHHYGTAGILSLPTSMPA 243
FYP+ G+ +HYP M Y G PHH G+ L+ +P+
Sbjct: 180 PAAGFYPYLQFAEGNGPVTGYAPLHYPNHMFHYSAPGGNYPHHNGSPVSLAPSPVIPS 237
>TAIR|locus:2037370 [details] [associations]
symbol:AT1G20880 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00530203 RefSeq:NP_001185049.1 RefSeq:NP_564127.1
UniGene:At.26164 ProteinModelPortal:F4HUQ5 SMR:F4HUQ5 PRIDE:F4HUQ5
EnsemblPlants:AT1G20880.1 EnsemblPlants:AT1G20880.2 GeneID:838681
KEGG:ath:AT1G20880 OMA:MAYHSIP Uniprot:F4HUQ5
Length = 274
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 103/178 (57%), Positives = 124/178 (69%)
Query: 13 NHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 72
N P + DTTFTK+FVGGLAWETQ +T+RR+F+Q+G+ILEAVVITDKNTGRSKGYGFVTF
Sbjct: 15 NSP--FGDTTFTKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTF 72
Query: 73 KDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQ----HGGGRFRP-AP--GLV 125
+DPEAA RAC +P+P+IDGRRANCNLASLG ++RPP H GR RP +P G V
Sbjct: 73 RDPEAARRACVDPTPIIDGRRANCNLASLG--RSRPPMQYAVIPHAPGRVRPPSPYVGSV 130
Query: 126 -APPAYHGGFSSSYVHQPTGQYTFPYSA---YGYTGYSQDTMYALN--YYNIYGGQQF 177
+P H G S Y HQP Y + YG T Y D MY+ + +Y Y GQQ+
Sbjct: 131 QSPRGLHFG-SHPY-HQPP-TYNYQQGVVYPYGVTPYGPDYMYSQSQGFYGPYMGQQY 185
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 99/177 (55%), Positives = 120/177 (67%)
Query: 13 NHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 72
N P + DTTFTK+FVGGLAWETQ +T+R++FEQ+GEILEAVVI DKNTGRSKGYGFVTF
Sbjct: 15 NSP--FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTF 72
Query: 73 KDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQ----HGGGRFRPA-P--GLV 125
+DPEAA RAC +P+P+IDGRRANCNLASLG + RPP P + GR RPA P G V
Sbjct: 73 RDPEAARRACADPTPIIDGRRANCNLASLG--RPRPPLPYAVIPNMPGRLRPASPYIGNV 130
Query: 126 APPAYHGGFSSSYVHQPTGQYTFPYSA---YGYTGYSQDTMYALNY--YNIYGGQQF 177
P G +Y +Q Y + YG T Y + MY+ + Y+ Y GQQ+
Sbjct: 131 QGP--RGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYMYSQSQGLYSPYMGQQY 185
>TAIR|locus:2017779 [details] [associations]
symbol:AT1G22910 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00523114
RefSeq:NP_973889.1 UniGene:At.26231 ProteinModelPortal:F4I321
SMR:F4I321 EnsemblPlants:AT1G22910.3 GeneID:838898
KEGG:ath:AT1G22910 ArrayExpress:F4I321 Uniprot:F4I321
Length = 347
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 92/169 (54%), Positives = 113/169 (66%)
Query: 9 MVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYG 68
M GG GD TT+TK+FVGGLAWET ++TM+++FEQFGEILEAVVITDK +GRSKGYG
Sbjct: 1 MAGGIGLGD---TTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYG 57
Query: 69 FVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP 128
FVTF++ EAA AC + +PVIDGRRANCNLASLG +++P TP HGGG R V
Sbjct: 58 FVTFREAEAARSACVDATPVIDGRRANCNLASLGLQRSKPSTPNHGGGG-RINNMRVMMS 116
Query: 129 AYHGGFSSSYVHQP---TGQYTFPYSAYGYTGYSQD-TMYALNYYNIYG 173
GF QP T P + +GY+ YS D + + N Y +YG
Sbjct: 117 TMQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYG 165
>TAIR|locus:2196521 [details] [associations]
symbol:AT1G22330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AC068562 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P09651 HOGENOM:HOG000276232
ProtClustDB:CLSN2689288 IPI:IPI00540466 PIR:B86356
RefSeq:NP_564168.2 UniGene:At.41608 ProteinModelPortal:Q9LME7
SMR:Q9LME7 STRING:Q9LME7 PRIDE:Q9LME7 EnsemblPlants:AT1G22330.1
GeneID:838839 KEGG:ath:AT1G22330 TAIR:At1g22330 InParanoid:Q9LME7
OMA:TESHAPQ PhylomeDB:Q9LME7 Genevestigator:Q9LME7 Uniprot:Q9LME7
Length = 291
Score = 397 (144.8 bits), Expect = 6.3e-37, P = 6.3e-37
Identities = 87/158 (55%), Positives = 106/158 (67%)
Query: 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEA 77
+ DTT TK+FVGGLAWET D MRRYF+QFGEILEAV+ITDK TG+SKGYGFVTF+D ++
Sbjct: 11 FGDTTHTKVFVGGLAWETPTDEMRRYFDQFGEILEAVIITDKATGKSKGYGFVTFRDSDS 70
Query: 78 AMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSS 137
A RA +P+PVIDGR+ANCN+AS G + RP TP+ G G+ G +P Y GG SS
Sbjct: 71 ATRAVADPNPVIDGRKANCNIASFG--RPRPSTPR-GRGQ----GG--SPSQYQGGGQSS 121
Query: 138 YVHQ--PTGQYT---FPYSAYGYTGYSQDTMYALNYYN 170
Y P Q Y +YGYT Y+ + Y YN
Sbjct: 122 YTGMAAPVQQAAAAQLMYPSYGYT-YNSEYGYHQALYN 158
>TAIR|locus:2032120 [details] [associations]
symbol:AT1G78260 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P09651 HOGENOM:HOG000276232 eggNOG:NOG248750 EMBL:AY084982
EMBL:BT030002 IPI:IPI00529893 RefSeq:NP_565175.1 UniGene:At.43623
ProteinModelPortal:Q8LF90 SMR:Q8LF90 STRING:Q8LF90
EnsemblPlants:AT1G78260.1 GeneID:844161 KEGG:ath:AT1G78260
TAIR:At1g78260 InParanoid:Q8LF90 OMA:SPYYYGY PhylomeDB:Q8LF90
ProtClustDB:CLSN2689288 Genevestigator:Q8LF90 Uniprot:Q8LF90
Length = 287
Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
Identities = 81/154 (52%), Positives = 104/154 (67%)
Query: 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEA 77
+ DTT+TK+FVGGLAWET D MRRYFEQFGEILEAV+ITDKNTG+SKGYGFVTF++ ++
Sbjct: 11 FGDTTYTKVFVGGLAWETPTDEMRRYFEQFGEILEAVIITDKNTGKSKGYGFVTFRESDS 70
Query: 78 AMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSS 137
A RA +P+PVIDGR+ANCN+AS G + RP P+ G P+ P+ + G ++
Sbjct: 71 ATRAVADPNPVIDGRKANCNIASFG--RPRPSPPRGRGQTGSPSQYQSGGPSTYTGMAAP 128
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQDTM-YALNYYN 170
Q +P +YGYT Y+ D Y YN
Sbjct: 129 LPPAAAPQLMYP--SYGYT-YNPDQFGYHQALYN 159
>TAIR|locus:2102435 [details] [associations]
symbol:ARP1 "ABA-regulated RNA-binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0010029
"regulation of seed germination" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0005634 EMBL:CP002686 GO:GO:0000166
GO:GO:0009651 GO:GO:0009414 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0010029 EMBL:AL138650 HSSP:P11940 IPI:IPI00531276 PIR:T47636
RefSeq:NP_191037.1 UniGene:At.20812 ProteinModelPortal:Q9M1S3
SMR:Q9M1S3 DNASU:824642 EnsemblPlants:AT3G54770.1 GeneID:824642
KEGG:ath:AT3G54770 TAIR:At3g54770 InParanoid:Q9M1S3 OMA:FYHFHQS
PhylomeDB:Q9M1S3 ProtClustDB:CLSN2685114 Genevestigator:Q9M1S3
Uniprot:Q9M1S3
Length = 261
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 75/150 (50%), Positives = 97/150 (64%)
Query: 13 NHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 72
N G + DT TK+FVGGLAW+T ++ M +F ++G+ILEAV+I+DK T RSKGYGFVTF
Sbjct: 6 NVNGCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGYGFVTF 65
Query: 73 KDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPT---PQHG---GGRFRPAP-GLV 125
KD +AA RAC++ +P+I+GRRANCNLASLG + PT PQ G G R P G
Sbjct: 66 KDAKAATRACEDSTPIINGRRANCNLASLGGRLRKSPTMTSPQQGPKNGNRATPPHVGNH 125
Query: 126 APPAYHGGFSSSYVHQPTGQYTFPYSAYGY 155
+ Y GF++ HQ P+ YGY
Sbjct: 126 SQWYYPSGFTNQQ-HQQQNHQAVPF--YGY 152
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 303 (111.7 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 64/110 (58%), Positives = 78/110 (70%)
Query: 5 RPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRS 64
RP G H G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S
Sbjct: 16 RPPAAPGAMH-GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 74
Query: 65 KGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG 114
+GYGFVT D AA RAC++P+P IDGR+AN NLA LGA +P + Q G
Sbjct: 75 RGYGFVTMADRAAAERACKDPNPNIDGRKANVNLAYLGA---KPRSLQTG 121
Score = 49 (22.3 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 120 PAPGLVAPPAYHGGFSSSYVHQPTGQYT-FPYSAYGYTGYS 159
P P L +P + S +Y P Y +PY+A T S
Sbjct: 161 PVPSLSSPYIEYTPASPAYAQYPPATYDQYPYAASPATAAS 201
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 303 (111.7 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 64/110 (58%), Positives = 78/110 (70%)
Query: 5 RPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRS 64
RP G H G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S
Sbjct: 16 RPPAAPGAMH-GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 74
Query: 65 KGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG 114
+GYGFVT D AA RAC++P+P IDGR+AN NLA LGA +P + Q G
Sbjct: 75 RGYGFVTMADRAAAERACKDPNPNIDGRKANVNLAYLGA---KPRSLQTG 121
Score = 47 (21.6 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 120 PAPGLVAPPAYHGGFSSSYVHQPTGQYT-FPYSAYGYTGYS 159
P P L +P + S +Y P Y +PY+A T S
Sbjct: 161 PVPPLSSPYIEYTPASPAYAQYPPATYDQYPYAASPATAAS 201
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
Identities = 79/165 (47%), Positives = 98/165 (59%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG--RFRPA----P-GLVA----PP 128
RAC++P+P+IDGR+AN NLA LGA K R P G + PA P G+ A P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALVQRPYGIPAHYVYPQ 125
Query: 129 AY-HGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIY 172
AY G +V Q T PY Y Y+Q A Y+ Y
Sbjct: 126 AYVQQGLVIPHVQQTAAASTSPYIDYTSAAYAQYAAAAAAAYDQY 170
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
Identities = 68/127 (53%), Positives = 86/127 (67%)
Query: 14 HPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 73
+P DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT
Sbjct: 15 YPSIQKDTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMM 74
Query: 74 DPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGG 133
D AA RAC++P+P+IDGR+AN NLA LGA K R P + G + P L+ Y G
Sbjct: 75 DKSAAERACKDPNPIIDGRKANVNLAYLGA-KPRSPLTGYSTGVQQVHPTLIQRQ-Y--G 130
Query: 134 FSSSYVH 140
S YV+
Sbjct: 131 LSQPYVY 137
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 71/138 (51%), Positives = 89/138 (64%)
Query: 5 RPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRS 64
RPL G H G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S
Sbjct: 16 RPLAAPGAMH-GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 74
Query: 65 KGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGL 124
+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA K R G + P L
Sbjct: 75 RGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA-KPRSLQTGFAIGVQQLHPTL 133
Query: 125 VAPPAYHGGFSSSYVHQP 142
+ Y G + Y++ P
Sbjct: 134 IQR-TY--GLTPHYIYPP 148
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
Identities = 75/153 (49%), Positives = 94/153 (61%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP---AYHGGFSS 136
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P H +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALIQRPFGIPAHYVYPQ 125
Query: 137 SYV-------H-QPTGQY-TFPYSAYGYTGYSQ 160
+YV H QPT T PY Y Y+Q
Sbjct: 126 AYVQPGVVIPHVQPTAATSTSPYIDYTSAAYAQ 158
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 85/217 (39%), Positives = 107/217 (49%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP---AYHGGFSS 136
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P H +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 125
Query: 137 SYV-------H-QPTGQY--TFPYSAYGYTG--YSQDTMYALNYYNI-YGGQQFXXXXXX 183
++V H QP T PY GYTG Y+Q + A Y Y
Sbjct: 126 AFVQPGVVIPHVQPAAAAASTTPY--IGYTGAAYAQYSAAAAAYEQYPYAASPAAAAGYV 183
Query: 184 XXXXXXXMFHNFYPFXXXXXXXXXXXGFGVHYPQMLQ 220
FG + PQ LQ
Sbjct: 184 AAGGYGYAVQQPITAAAPGTAAAAAAAFGQYQPQQLQ 220
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 75/153 (49%), Positives = 93/153 (60%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG--RFRPA----P-GLVAPPAY-H 131
RAC++P+P+IDGR+AN NLA LGA K R P G + PA P G+ A Y H
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALIQRPFGIPAHYVYPH 125
Query: 132 G----GFSSSYVHQPTGQYTFPYSAYGYTGYSQ 160
G +V Q T PY Y Y+Q
Sbjct: 126 AFVQPGVVIPHVQQAAAASTSPYIDYTSAAYAQ 158
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 75/154 (48%), Positives = 94/154 (61%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP---AYHGGFSS 136
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P H +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 125
Query: 137 SYV-------H-QPTGQY--TFPYSAYGYTGYSQ 160
++V H QPT T PY Y Y+Q
Sbjct: 126 AFVQPGVVIPHVQPTAAAASTAPYIDYTGAAYAQ 159
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 75/154 (48%), Positives = 94/154 (61%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP---AYHGGFSS 136
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P H +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 125
Query: 137 SYV-------H-QPTGQY--TFPYSAYGYTGYSQ 160
++V H QPT T PY Y Y+Q
Sbjct: 126 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ 159
>UNIPROTKB|F1RUJ2 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:LQADRMQ
EMBL:CU466948 Ensembl:ENSSSCT00000001161 Uniprot:F1RUJ2
Length = 254
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 70/140 (50%), Positives = 89/140 (63%)
Query: 2 SQQR-PLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKN 60
S+ R P + G DTT+TKIFVGGL + T ++R+YFE FGEI EAVVITD+
Sbjct: 6 SRSRSPSRGAGAKMHTTQKDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQ 65
Query: 61 TGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRP 120
TG+S+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA K R P G +
Sbjct: 66 TGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQL 124
Query: 121 APGLVAPPAYHGGFSSSYVH 140
P L+ P G + YV+
Sbjct: 125 HPALIQRPF---GIPAHYVY 141
>ZFIN|ZDB-GENE-040628-1 [details] [associations]
symbol:rbm24a "RNA binding motif protein 24a"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003228
"atrial cardiac muscle tissue development" evidence=IMP]
[GO:0072358 "cardiovascular system development" evidence=IGI]
[GO:0001947 "heart looping" evidence=IMP] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040628-1 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0001947 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
EMBL:AB080735 IPI:IPI00506301 RefSeq:NP_998030.1 UniGene:Dr.159425
ProteinModelPortal:Q76LC6 SMR:Q76LC6 STRING:Q76LC6
Ensembl:ENSDART00000110862 GeneID:405801 KEGG:dre:405801 CTD:405801
GeneTree:ENSGT00390000002308 OrthoDB:EOG4KWJVF NextBio:20817766
ArrayExpress:Q76LC6 Bgee:Q76LC6 GO:GO:0003228 Uniprot:Q76LC6
Length = 230
Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
Identities = 76/196 (38%), Positives = 101/196 (51%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYV 139
RAC++P+P+IDGR+AN NLA LGA K R P G + P + P Y G + YV
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRVMQPGFTFGVPQIHPAFIQRP-Y--GIPTHYV 122
Query: 140 HQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQFXXXXXXXXXXXXXMFHNFYPFX 199
+ P + P + + + A + Y Y G + + YP+
Sbjct: 123 Y-PQA-FMQPSVVIPHIQPTATSATASSPYIDYTGAAYAQYASAATAAAAAAYEQ-YPYA 179
Query: 200 XXXXXXXXXXGFGVHY 215
G Y
Sbjct: 180 ASPAATGYVAAAGYGY 195
>TAIR|locus:4515103555 [details] [associations]
symbol:AT5G11412 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005576 "extracellular region"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:DQ487706 IPI:IPI00775531 RefSeq:NP_001119208.1
UniGene:At.69225 ProteinModelPortal:Q1G378 SMR:Q1G378 STRING:Q1G378
EnsemblPlants:AT5G11412.1 GeneID:6240527 KEGG:ath:AT5G11412
TAIR:At5g11412 OMA:IDGREAK PhylomeDB:Q1G378 ProtClustDB:CLSN2925591
Genevestigator:Q1G378 Uniprot:Q1G378
Length = 175
Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
Identities = 55/90 (61%), Positives = 70/90 (77%)
Query: 14 HPGDYN-DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 72
H + N DT +TKI+VGGL WET+ + +R YFEQFG+I+ ++ D+ TGRS+GYGFVTF
Sbjct: 41 HYANENVDTRYTKIYVGGLPWETRNEGLRSYFEQFGDIIHVNMVCDRETGRSEGYGFVTF 100
Query: 73 KDPEAAMRACQNPSPVIDGRRANCNLASLG 102
+D E+A RACQNP PVIDGR A CNLA +G
Sbjct: 101 RDAESATRACQNPKPVIDGREAKCNLAYIG 130
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 65/121 (53%), Positives = 83/121 (68%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYV 139
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P G + YV
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPF---GIPAHYV 122
Query: 140 H 140
+
Sbjct: 123 Y 123
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 74/154 (48%), Positives = 94/154 (61%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP---AYHGGFSS 136
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P H +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 125
Query: 137 SYV-------H-QPTGQY--TFPYSAYGYTGYSQ 160
++V H QPT T PY Y Y+Q
Sbjct: 126 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ 159
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 74/154 (48%), Positives = 94/154 (61%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP---AYHGGFSS 136
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P H +
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPFGIPAHYVYPQ 125
Query: 137 SYV-------H-QPTGQY--TFPYSAYGYTGYSQ 160
++V H QPT T PY Y Y+Q
Sbjct: 126 AFVQPGVVIPHVQPTAAAASTTPYIDYTGAAYAQ 159
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 69/138 (50%), Positives = 87/138 (63%)
Query: 5 RPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRS 64
RP H G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S
Sbjct: 14 RPSAAPSAMH-GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 72
Query: 65 KGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGL 124
+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA K R G + P L
Sbjct: 73 RGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGA-KPRSLQTGFAVGVQQLHPTL 131
Query: 125 VAPPAYHGGFSSSYVHQP 142
+ Y G + Y++ P
Sbjct: 132 IQR-TY--GLTPHYIYPP 146
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 69/138 (50%), Positives = 87/138 (63%)
Query: 5 RPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRS 64
RP H G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S
Sbjct: 14 RPSAAPSAMH-GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 72
Query: 65 KGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGL 124
+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA K R G + P L
Sbjct: 73 RGYGFVTMADRAAADRACKDPNPIIDGRKANVNLAYLGA-KPRSLQTGFAVGVQQLHPTL 131
Query: 125 VAPPAYHGGFSSSYVHQP 142
+ Y G + Y++ P
Sbjct: 132 IQR-TY--GLTPHYIYPP 146
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 64/110 (58%), Positives = 78/110 (70%)
Query: 5 RPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRS 64
RP G H G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S
Sbjct: 16 RPPAAPGAMH-GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 74
Query: 65 KGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG 114
+GYGFVT D AA RAC++P+P IDGR+AN NLA LGA +P + Q G
Sbjct: 75 RGYGFVTMADRAAAERACKDPNPNIDGRKANVNLAYLGA---KPRSLQTG 121
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 75/160 (46%), Positives = 91/160 (56%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTP-QHGGGRFRPA----P-GLVAPPAYHGG 133
RAC++P+P+IDGR+AN NLA LGA T G + PA P GL Y
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGAKPRSIQTGFTIGVQQLHPAFIQRPFGLTPHYVYPQA 126
Query: 134 F--SSSYVHQPTGQYTFPYSAY--GYTGYSQDTMYALNYY 169
S + P PY Y YSQ T A + Y
Sbjct: 127 IIQPSVVIPTPVQSIASPYIDYTAASQAYSQYTTAAYDQY 166
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 60/99 (60%), Positives = 75/99 (75%)
Query: 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 75
G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D
Sbjct: 3 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 62
Query: 76 EAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG 114
AA RAC++P+P+IDGR+AN NLA LGA +P + Q G
Sbjct: 63 AAAERACKDPNPIIDGRKANVNLAYLGA---KPRSLQTG 98
>ZFIN|ZDB-GENE-060312-43 [details] [associations]
symbol:rbm24b "RNA binding motif protein 24b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0001947 "heart
looping" evidence=IMP] [GO:0072358 "cardiovascular system
development" evidence=IGI] [GO:0003228 "atrial cardiac muscle
tissue development" evidence=IMP] [GO:0003229 "ventricular cardiac
muscle tissue development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-060312-43 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0001947 GO:GO:0003229
GeneTree:ENSGT00390000002308 GO:GO:0003228 EMBL:CT027645
IPI:IPI00898048 ProteinModelPortal:E9QCG4
Ensembl:ENSDART00000127556 Bgee:E9QCG4 Uniprot:E9QCG4
Length = 245
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 56/84 (66%), Positives = 69/84 (82%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGA 103
RAC++P+P+IDGR+AN NLA LGA
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA 90
>WB|WBGene00006321 [details] [associations]
symbol:sup-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0040012 "regulation of locomotion" evidence=IGI] [GO:0032956
"regulation of actin cytoskeleton organization" evidence=IGI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IPI] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0097157 "pre-mRNA
intronic binding" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IPI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0040012 GO:GO:0030529 GO:GO:0032956 GO:GO:0097157
GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/84 (66%), Positives = 68/84 (80%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DT FTKIFVGGL + T T+ YFEQFG+I EAVVITD+NT +S+GYGFVT KD +A
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 80 RACQNPSPVIDGRRANCNLASLGA 103
RAC++P+P+IDGR+AN NLA LGA
Sbjct: 91 RACKDPNPIIDGRKANVNLAYLGA 114
>UNIPROTKB|O45189 [details] [associations]
symbol:sup-12 "Protein SUP-12, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0040012 GO:GO:0030529 GO:GO:0032956
GO:GO:0097157 GO:GO:0000380 HSSP:P09651 HOGENOM:HOG000276232
GeneTree:ENSGT00390000002308 EMBL:FO081409 GeneID:180674
KEGG:cel:CELE_T22B2.4 CTD:180674 PIR:T33034 RefSeq:NP_508674.1
ProteinModelPortal:O45189 SMR:O45189 DIP:DIP-24970N IntAct:O45189
MINT:MINT-1047167 STRING:O45189 EnsemblMetazoa:T22B2.4a
UCSC:T22B2.4 WormBase:T22B2.4a InParanoid:O45189 OMA:DRNTQKS
NextBio:910400 ArrayExpress:O45189 Uniprot:O45189
Length = 248
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 56/84 (66%), Positives = 68/84 (80%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DT FTKIFVGGL + T T+ YFEQFG+I EAVVITD+NT +S+GYGFVT KD +A
Sbjct: 31 DTMFTKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAE 90
Query: 80 RACQNPSPVIDGRRANCNLASLGA 103
RAC++P+P+IDGR+AN NLA LGA
Sbjct: 91 RACKDPNPIIDGRKANVNLAYLGA 114
>TAIR|locus:2164042 [details] [associations]
symbol:AT5G53680 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0006457 "protein folding"
evidence=RCA] [GO:0009408 "response to heat" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0042542 "response to hydrogen peroxide" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AB017066
HSSP:Q61474 IPI:IPI00517619 RefSeq:NP_200179.1 UniGene:At.55530
ProteinModelPortal:Q9FI08 SMR:Q9FI08 EnsemblPlants:AT5G53680.1
GeneID:835449 KEGG:ath:AT5G53680 TAIR:At5g53680
HOGENOM:HOG000152479 InParanoid:Q9FI08 PhylomeDB:Q9FI08
ProtClustDB:CLSN2916322 Genevestigator:Q9FI08 Uniprot:Q9FI08
Length = 169
Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 51/93 (54%), Positives = 70/93 (75%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTTFTKI+VGGL W T+++ + +F++FGEI+ V+ D+ T RS+GYGFVTFKD E+A
Sbjct: 9 DTTFTKIYVGGLPWTTRKEGLINFFKRFGEIIHVNVVCDRETDRSQGYGFVTFKDAESAT 68
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQ 112
RAC++P+P I+GR NC LA +GA K +P Q
Sbjct: 69 RACKDPNPTIEGRITNCKLAFVGA-KVKPNQSQ 100
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 50/85 (58%), Positives = 64/85 (75%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
+DT TKIFVG L W T D +RRYFEQFG++++A V+++ GRSKGYGF+TF+D +
Sbjct: 7 HDTRVTKIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVST 66
Query: 79 MRACQNPSPVIDGRRANCNLASLGA 103
+RA QN P+IDGR NCNLAS GA
Sbjct: 67 VRALQNSKPIIDGRTTNCNLASAGA 91
>TAIR|locus:2164082 [details] [associations]
symbol:AT5G53720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:AB017066
HSSP:Q61474 IPI:IPI00526229 RefSeq:NP_200183.1 UniGene:At.55532
ProteinModelPortal:Q9FI04 SMR:Q9FI04 EnsemblPlants:AT5G53720.1
GeneID:835453 KEGG:ath:AT5G53720 TAIR:At5g53720 eggNOG:NOG297705
InParanoid:Q9FI04 OMA:ATRACEN PhylomeDB:Q9FI04
ProtClustDB:CLSN2916326 Genevestigator:Q9FI04 Uniprot:Q9FI04
Length = 100
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 51/98 (52%), Positives = 66/98 (67%)
Query: 13 NHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 72
+HP D TKI+V GL W T+ + + YFE+FGEI+ A V+ D T RSKG+GFVTF
Sbjct: 2 SHPNDRE----TKIYVAGLPWITRTEGLISYFERFGEIVYAKVVCDGATQRSKGFGFVTF 57
Query: 73 KDPEAAMRACQNPSPVIDGRRANCNLASLGA--HKTRP 108
++ E+A RAC+NP+ IDGR NC LA LGA H +P
Sbjct: 58 REVESATRACENPNHTIDGRTVNCKLAYLGARVHNYQP 95
>UNIPROTKB|E2RM01 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00390000002308 EMBL:AAEX03017572 EMBL:AAEX03017571
Ensembl:ENSCAFT00000015807 Uniprot:E2RM01
Length = 116
Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
Identities = 55/109 (50%), Positives = 67/109 (61%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
DTT+TKIFVGGL + T ++R+YFE FGEI EAVVIT VT D AA
Sbjct: 7 DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITXXXXXXXXXVAKVTMADRAAAE 66
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP 128
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P
Sbjct: 67 RACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRP 114
>UNIPROTKB|F1NTG9 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AADN02058490 IPI:IPI00577519
Ensembl:ENSGALT00000024525 ArrayExpress:F1NTG9 Uniprot:F1NTG9
Length = 398
Score = 198 (74.8 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRPPTPQHGGGR 117
+DGR + C + +TRP G R
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGSR 96
Score = 156 (60.0 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 43/142 (30%), Positives = 65/142 (45%)
Query: 12 GNHPGDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70
G G +D + KIFVGG+ +R YF++FG + E V+I D R +G+GF+
Sbjct: 90 GWQKGSRSDNNKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 149
Query: 71 TFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTP---QHGGGRFRP--APGLV 125
TF+D ++ +A I G++ A K++ P P G R P A G
Sbjct: 150 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGASQWGSRIMPSAANGWA 209
Query: 126 A--PPAYHGGFSSSYVHQPTGQ 145
PP + G+ + P GQ
Sbjct: 210 GQPPPTWQQGYGPQGMWVPAGQ 231
Score = 62 (26.9 bits), Expect = 9.5e-20, Sum P(2) = 9.5e-20
Identities = 17/48 (35%), Positives = 19/48 (39%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGY 155
PP P G AP PP + PT Q FPYS +GY
Sbjct: 300 PPPPATPGA----APLAFPPPPPPSQATQDMSKPPTAQPEFPYSQFGY 343
Score = 53 (23.7 bits), Expect = 8.3e-19, Sum P(2) = 8.3e-19
Identities = 20/61 (32%), Positives = 24/61 (39%)
Query: 109 PTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYT-GYSQDTMYALN 167
P Q GG P PG APP F+S V P G + P G+ GY +
Sbjct: 228 PAGQAIGGYGPPPPGRGAPPP-PPPFASYIVSTPPGGFPPPQ---GFPQGYGTPPPFTFG 283
Query: 168 Y 168
Y
Sbjct: 284 Y 284
Score = 36 (17.7 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 108 PPTPQHGGGRFRPAPGLVAPP 128
PP G G P P APP
Sbjct: 277 PPPFTFGYGAPPPPPDQFAPP 297
>UNIPROTKB|E1BAK6 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:DAAA02020260 IPI:IPI00701555 Ensembl:ENSBTAT00000026274
Uniprot:E1BAK6
Length = 396
Score = 196 (74.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 1 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 60
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRPPTPQHGGGR 117
+DGR + C + +TRP G R
Sbjct: 61 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 96
Score = 147 (56.8 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 12 GNHPGDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70
G G +D + + KIFVGG+ +R YF++FG + E V+I D R +G+GF+
Sbjct: 90 GWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 149
Query: 71 TFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP-TP--QHGGGRFRP--APGLV 125
TF+D ++ +A I G++ A K++ P P G R P A G
Sbjct: 150 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWA 209
Query: 126 A--PPAYHGGFSSSYVHQPTGQ 145
PP + G+ + P GQ
Sbjct: 210 GQPPPTWQQGYGPQGMWVPAGQ 231
Score = 63 (27.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 19/48 (39%), Positives = 19/48 (39%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGY 155
PP P G AP PP S PT Q FPYS YGY
Sbjct: 300 PPPPATPGA----APLAFPPPPSQAAPDMS--KPPTAQPDFPYSQYGY 341
Score = 48 (22.0 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 109 PTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYT-GYSQDTMYALN 167
P Q GG P G APP F+S V P G + P G+ GY ++
Sbjct: 228 PAGQAIGGYGPPPAGRGAPPP-PPPFTSYIVSTPPGGFPPPQ---GFPQGYGAPPQFSFG 283
Query: 168 Y 168
Y
Sbjct: 284 Y 284
Score = 36 (17.7 bits), Expect = 8.0e-17, Sum P(2) = 8.0e-17
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 108 PPTPQHGGGRFRPAPGLVAPP 128
PP G G P P APP
Sbjct: 277 PPQFSFGYGPPPPPPDQFAPP 297
>UNIPROTKB|I3LB68 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:FP325262 RefSeq:NP_001231435.1
UniGene:Ssc.1299 Ensembl:ENSSSCT00000023438 GeneID:100625005
KEGG:ssc:100625005 Uniprot:I3LB68
Length = 406
Score = 196 (74.1 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRPPTPQHGGGR 117
+DGR + C + +TRP G R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 147 (56.8 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 12 GNHPGDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70
G G +D + + KIFVGG+ +R YF++FG + E V+I D R +G+GF+
Sbjct: 100 GWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 71 TFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP-TP--QHGGGRFRP--APGLV 125
TF+D ++ +A I G++ A K++ P P G R P A G
Sbjct: 160 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWA 219
Query: 126 A--PPAYHGGFSSSYVHQPTGQ 145
PP + G+ + P GQ
Sbjct: 220 GQPPPTWQQGYGPQGMWVPAGQ 241
Score = 63 (27.2 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 19/48 (39%), Positives = 19/48 (39%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGY 155
PP P G AP PP S PT Q FPYS YGY
Sbjct: 310 PPPPATPGA----APLAFPPPPSQAAPDMS--KPPTAQPDFPYSQYGY 351
Score = 48 (22.0 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 109 PTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYT-GYSQDTMYALN 167
P Q GG P G APP F+S V P G + P G+ GY ++
Sbjct: 238 PAGQAIGGYGPPPAGRGAPPP-PPPFTSYIVSTPPGGFPPPQ---GFPQGYGAPPQFSFG 293
Query: 168 Y 168
Y
Sbjct: 294 Y 294
Score = 36 (17.7 bits), Expect = 9.2e-17, Sum P(2) = 9.2e-17
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 108 PPTPQHGGGRFRPAPGLVAPP 128
PP G G P P APP
Sbjct: 287 PPQFSFGYGPPPPPPDQFAPP 307
>UNIPROTKB|E2R6E4 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 CTD:26528 KO:K14411 OMA:HNLDGRN
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
RefSeq:XP_003432858.1 Ensembl:ENSCAFT00000031038 GeneID:100683271
KEGG:cfa:100683271 Uniprot:E2R6E4
Length = 407
Score = 196 (74.1 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRPPTPQHGGGR 117
+DGR + C + +TRP G R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 147 (56.8 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 12 GNHPGDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70
G G +D + + KIFVGG+ +R YF++FG + E V+I D R +G+GF+
Sbjct: 100 GWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 71 TFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP-TP--QHGGGRFRP--APGLV 125
TF+D ++ +A I G++ A K++ P P G R P A G
Sbjct: 160 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWA 219
Query: 126 A--PPAYHGGFSSSYVHQPTGQ 145
PP + G+ + P GQ
Sbjct: 220 GQPPPTWQQGYGPQGMWVPAGQ 241
Score = 63 (27.2 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
Identities = 21/54 (38%), Positives = 21/54 (38%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQD 161
PP P G AP PP S PT Q FPYS Y GY QD
Sbjct: 310 PPPPATPGA----APLAFPPPPSQAAPDMS--KPPTAQPDFPYSQYA--GYGQD 355
Score = 48 (22.0 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 109 PTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYT-GYSQDTMYALN 167
P Q GG P G APP F+S V P G + P G+ GY ++
Sbjct: 238 PAGQAIGGYGPPPAGRGAPPP-PPPFTSYIVSTPPGGFPPPQ---GFPQGYGAPPQFSFG 293
Query: 168 Y 168
Y
Sbjct: 294 Y 294
Score = 36 (17.7 bits), Expect = 9.3e-17, Sum P(2) = 9.3e-17
Identities = 9/21 (42%), Positives = 9/21 (42%)
Query: 108 PPTPQHGGGRFRPAPGLVAPP 128
PP G G P P APP
Sbjct: 287 PPQFSFGYGPPPPPPDQFAPP 307
>MGI|MGI:1917498 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001893 "maternal placenta development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844 "polysome"
evidence=IDA] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0008283 "cell proliferation" evidence=IMP] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0035613 "RNA stem-loop binding"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1917498 GO:GO:0007275
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
ChiTaRS:DAZAP1 EMBL:AF225910 EMBL:BC049355 IPI:IPI00406492
IPI:IPI00406493 RefSeq:NP_001116076.1 RefSeq:NP_001116077.1
RefSeq:NP_573451.2 UniGene:Mm.148693 ProteinModelPortal:Q9JII5
SMR:Q9JII5 STRING:Q9JII5 PhosphoSite:Q9JII5
REPRODUCTION-2DPAGE:Q9JII5 PaxDb:Q9JII5 PRIDE:Q9JII5
Ensembl:ENSMUST00000092305 Ensembl:ENSMUST00000105362 GeneID:70248
KEGG:mmu:70248 UCSC:uc007gcl.2 UCSC:uc007gcm.2
GeneTree:ENSGT00700000104255 InParanoid:Q9JII5 NextBio:331250
Bgee:Q9JII5 CleanEx:MM_DAZAP1 Genevestigator:Q9JII5
GermOnline:ENSMUSG00000069565 Uniprot:Q9JII5
Length = 406
Score = 196 (74.1 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRPPTPQHGGGR 117
+DGR + C + +TRP G R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 149 (57.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 12 GNHPGDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70
G G +D++ + KIFVGG+ +R YF++FG + E V+I D R +G+GF+
Sbjct: 100 GWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 71 TFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP-TP--QHGGGRFRP--APGLV 125
TF+D ++ +A I G++ A K + P P G R P A G
Sbjct: 160 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWA 219
Query: 126 A--PPAYHGGFSSSYVHQPTGQ 145
PP + G+ + P GQ
Sbjct: 220 GQPPPTWQQGYGPQGMWVPAGQ 241
Score = 60 (26.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 23/71 (32%), Positives = 25/71 (35%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGY----TGYSQDTM 163
PP P G AP PP S PT Q FPY YGY +G+ Q
Sbjct: 310 PPPPATPGA----APLAFPPPPSQAAPDMS--KPPTAQPDFPYGQYGYGQDLSGFGQGFS 363
Query: 164 YALNYYNIYGG 174
YGG
Sbjct: 364 DPSQQPPSYGG 374
Score = 50 (22.7 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTG---QYTFPYSA-----YGYTGYS 159
PP P +F P PG+ PPA G ++ P+ + P +A YG GY
Sbjct: 298 PPPPD----QFAP-PGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGYG 352
Query: 160 QD 161
QD
Sbjct: 353 QD 354
Score = 48 (22.0 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 109 PTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYT-GYSQDTMYALN 167
P Q GG P G APP F+S V P G + P G+ GY ++
Sbjct: 238 PAGQAIGGYGPPPAGRGAPPP-PPPFTSYIVSTPPGGFPPPQ---GFPQGYGAPPQFSFG 293
Query: 168 Y 168
Y
Sbjct: 294 Y 294
Score = 46 (21.3 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 111 PQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPY 150
P +GG PG PPA GF H G + PY
Sbjct: 370 PSYGGPS---VPGSGGPPAGGSGFGRGQNHNVQGFH--PY 404
>UNIPROTKB|F2Z3S1 [details] [associations]
symbol:Dazap1 "Protein Dazap1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305280 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 IPI:IPI00365961
ProteinModelPortal:F2Z3S1 SMR:F2Z3S1 PRIDE:F2Z3S1
Ensembl:ENSRNOT00000046886 Uniprot:F2Z3S1
Length = 406
Score = 196 (74.1 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRPPTPQHGGGR 117
+DGR + C + +TRP G R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 149 (57.5 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 12 GNHPGDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70
G G +D++ + KIFVGG+ +R YF++FG + E V+I D R +G+GF+
Sbjct: 100 GWQKGPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 71 TFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP-TP--QHGGGRFRP--APGLV 125
TF+D ++ +A I G++ A K + P P G R P A G
Sbjct: 160 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWA 219
Query: 126 A--PPAYHGGFSSSYVHQPTGQ 145
PP + G+ + P GQ
Sbjct: 220 GQPPPTWQQGYGPQGMWVPAGQ 241
Score = 60 (26.2 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
Identities = 23/71 (32%), Positives = 25/71 (35%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGY----TGYSQDTM 163
PP P G AP PP S PT Q FPY YGY +G+ Q
Sbjct: 310 PPPPATPGA----APLAFPPPPSQAAPDMS--KPPTAQPDFPYGQYGYGQDLSGFGQGFS 363
Query: 164 YALNYYNIYGG 174
YGG
Sbjct: 364 DPSQQPPSYGG 374
Score = 50 (22.7 bits), Expect = 3.2e-18, Sum P(2) = 3.2e-18
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTG---QYTFPYSA-----YGYTGYS 159
PP P +F P PG+ PPA G ++ P+ + P +A YG GY
Sbjct: 298 PPPPD----QFAP-PGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGYG 352
Query: 160 QD 161
QD
Sbjct: 353 QD 354
Score = 48 (22.0 bits), Expect = 5.2e-18, Sum P(2) = 5.2e-18
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 109 PTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYT-GYSQDTMYALN 167
P Q GG P G APP F+S V P G + P G+ GY ++
Sbjct: 238 PAGQAIGGYGPPPAGRGAPPP-PPPFTSYIVSTPPGGFPPPQ---GFPQGYGAPPQFSFG 293
Query: 168 Y 168
Y
Sbjct: 294 Y 294
Score = 46 (21.3 bits), Expect = 8.4e-18, Sum P(2) = 8.4e-18
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 111 PQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPY 150
P +GG PG PPA GF H G + PY
Sbjct: 370 PSYGGPS---VPGSGGPPAGGSGFGRGQNHNVQGFH--PY 404
>RGD|1305280 [details] [associations]
symbol:Dazap1 "DAZ associated protein 1" species:10116 "Rattus
norvegicus" [GO:0001893 "maternal placenta development"
evidence=ISO] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0007283 "spermatogenesis"
evidence=ISO] [GO:0008283 "cell proliferation" evidence=ISO]
[GO:0035613 "RNA stem-loop binding" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005844 "polysome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305280 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH474029 eggNOG:COG0724
CTD:26528 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
OrthoDB:EOG40ZQXT OMA:GGYDMYN IPI:IPI00365961 EMBL:BC098930
RefSeq:NP_001020913.1 UniGene:Rn.16769 SMR:Q4KLZ3 GeneID:362836
KEGG:rno:362836 UCSC:RGD:1305280 InParanoid:Q4KLZ3 NextBio:681451
Genevestigator:Q4KLZ3 Uniprot:Q4KLZ3
Length = 405
Score = 195 (73.7 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 35/87 (40%), Positives = 53/87 (60%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRP 108
+DGR + C + +TRP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 148 (57.2 bits), Expect = 3.1e-08, P = 3.1e-08
Identities = 42/138 (30%), Positives = 65/138 (47%)
Query: 16 GDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
G +D++ + KIFVGG+ +R YF++FG + E V+I D R +G+GF+TF+D
Sbjct: 103 GPRSDSSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFED 162
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP-TP--QHGGGRFRP--APGLVA--P 127
++ +A I G++ A K + P P G R P A G P
Sbjct: 163 EQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKNQAPGQPGASQWGSRVAPSAANGWAGQPP 222
Query: 128 PAYHGGFSSSYVHQPTGQ 145
P + G+ + P GQ
Sbjct: 223 PTWQQGYGPQGMWVPAGQ 240
Score = 60 (26.2 bits), Expect = 3.7e-19, Sum P(2) = 3.7e-19
Identities = 23/71 (32%), Positives = 25/71 (35%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGY----TGYSQDTM 163
PP P G AP PP S PT Q FPY YGY +G+ Q
Sbjct: 309 PPPPATPGA----APLAFPPPPSQAAPDMS--KPPTAQPDFPYGQYGYGQDLSGFGQGFS 362
Query: 164 YALNYYNIYGG 174
YGG
Sbjct: 363 DPSQQPPSYGG 373
Score = 50 (22.7 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 20/62 (32%), Positives = 27/62 (43%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTG---QYTFPYSA-----YGYTGYS 159
PP P +F P PG+ PPA G ++ P+ + P +A YG GY
Sbjct: 297 PPPPD----QFAP-PGVPPPPATPGAAPLAFPPPPSQAAPDMSKPPTAQPDFPYGQYGYG 351
Query: 160 QD 161
QD
Sbjct: 352 QD 353
Score = 48 (22.0 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 109 PTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYT-GYSQDTMYALN 167
P Q GG P G APP F+S V P G + P G+ GY ++
Sbjct: 237 PAGQAIGGYGPPPAGRGAPPP-PPPFTSYIVSTPPGGFPPPQ---GFPQGYGAPPQFSFG 292
Query: 168 Y 168
Y
Sbjct: 293 Y 293
Score = 46 (21.3 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 111 PQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPY 150
P +GG PG PPA GF H G + PY
Sbjct: 369 PSYGGPS---VPGSGGPPAGGSGFGRGQNHNVQGFH--PY 403
>UNIPROTKB|Q96EP5 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 eggNOG:COG0724 EMBL:AF181719 EMBL:BC012062
EMBL:AK056850 IPI:IPI00165230 IPI:IPI00335930 RefSeq:NP_061832.2
RefSeq:NP_733829.1 UniGene:Hs.222510 PDB:2DGS PDB:2DH8 PDBsum:2DGS
PDBsum:2DH8 ProteinModelPortal:Q96EP5 SMR:Q96EP5 IntAct:Q96EP5
STRING:Q96EP5 PhosphoSite:Q96EP5 DMDM:44887869
REPRODUCTION-2DPAGE:IPI00165230 PaxDb:Q96EP5 PRIDE:Q96EP5
DNASU:26528 Ensembl:ENST00000233078 Ensembl:ENST00000336761
GeneID:26528 KEGG:hsa:26528 UCSC:uc002lsm.3 UCSC:uc002lsn.3
CTD:26528 GeneCards:GC19P001407 HGNC:HGNC:2683 HPA:HPA004201
HPA:HPA004631 MIM:607430 neXtProt:NX_Q96EP5 PharmGKB:PA27153
HOGENOM:HOG000234441 HOVERGEN:HBG002295 InParanoid:Q96EP5 KO:K14411
OMA:HNLDGRN OrthoDB:EOG40ZQXT PhylomeDB:Q96EP5 ChiTaRS:DAZAP1
EvolutionaryTrace:Q96EP5 GenomeRNAi:26528 NextBio:48864
ArrayExpress:Q96EP5 Bgee:Q96EP5 CleanEx:HS_DAZAP1
Genevestigator:Q96EP5 GermOnline:ENSG00000071626 Uniprot:Q96EP5
Length = 407
Score = 196 (74.1 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 37/96 (38%), Positives = 55/96 (57%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRPPTPQHGGGR 117
+DGR + C + +TRP G R
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRPKEGWQKGPR 106
Score = 147 (56.8 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 43/142 (30%), Positives = 66/142 (46%)
Query: 12 GNHPGDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70
G G +D + + KIFVGG+ +R YF++FG + E V+I D R +G+GF+
Sbjct: 100 GWQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFI 159
Query: 71 TFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP-TP--QHGGGRFRP--APGLV 125
TF+D ++ +A I G++ A K++ P P G R P A G
Sbjct: 160 TFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWA 219
Query: 126 A--PPAYHGGFSSSYVHQPTGQ 145
PP + G+ + P GQ
Sbjct: 220 GQPPPTWQQGYGPQGMWVPAGQ 241
Score = 59 (25.8 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 20/54 (37%), Positives = 20/54 (37%)
Query: 108 PPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQD 161
PP P G AP PP S PT Q FPY Y GY QD
Sbjct: 310 PPPPATPGA----APLAFPPPPSQAAPDMS--KPPTAQPDFPYGQYA--GYGQD 355
Score = 48 (22.0 bits), Expect = 5.3e-18, Sum P(2) = 5.3e-18
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 109 PTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYT-GYSQDTMYALN 167
P Q GG P G APP F+S V P G + P G+ GY ++
Sbjct: 238 PAGQAIGGYGPPPAGRGAPPP-PPPFTSYIVSTPPGGFPPPQ---GFPQGYGAPPQFSFG 293
Query: 168 Y 168
Y
Sbjct: 294 Y 294
Score = 46 (21.3 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 111 PQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPY 150
P +GG PG PPA GF H G + PY
Sbjct: 371 PSYGGPS---VPGSGGPPAGGSGFGRGQNHNVQGFH--PY 405
>UNIPROTKB|Q98SJ2 [details] [associations]
symbol:dazap1 "DAZ-associated protein 1" species:8355
"Xenopus laevis" [GO:0003723 "RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007275 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048477 GO:GO:0003723
CTD:26528 HOVERGEN:HBG002295 KO:K14411 EMBL:AY028920
RefSeq:NP_001082088.1 UniGene:Xl.1666 ProteinModelPortal:Q98SJ2
SMR:Q98SJ2 GeneID:398218 KEGG:xla:398218 Xenbase:XB-GENE-864805
Uniprot:Q98SJ2
Length = 360
Score = 191 (72.3 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 34/87 (39%), Positives = 53/87 (60%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRP 108
+DGR + C + ++RP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRP 97
Score = 150 (57.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 44/149 (29%), Positives = 67/149 (44%)
Query: 3 QQRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTG 62
+ RP + P N + KIFVGG+ ++ YF +FG + E V+I D
Sbjct: 94 RSRPREGWQQKEPRTENSRS-NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQ 152
Query: 63 RSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTP----QHGGGRF 118
R +G+GF+TF+D ++ +A I G++ A K++ P P Q G
Sbjct: 153 RPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAM 212
Query: 119 RP-APGLVA-PPAYHGGFSSSYVHQPTGQ 145
+ A G PP G+S + PTGQ
Sbjct: 213 QSTANGWTGQPPQTWQGYSPQGMWMPTGQ 241
Score = 58 (25.5 bits), Expect = 8.2e-19, Sum P(2) = 8.2e-19
Identities = 17/52 (32%), Positives = 22/52 (42%)
Query: 108 PPTPQHGGGRFRPAPGL--VAPPAYH---GGFSSSYVHQPTGQYTFPYSAYG 154
PP Q P PG AP A+ G + P+GQ FP+S +G
Sbjct: 298 PPPDQFVSSGVPPPPGTPGAAPLAFPPPPGQSAQDLSKPPSGQQDFPFSQFG 349
>ZFIN|ZDB-GENE-070212-1 [details] [associations]
symbol:dazap1 "DAZ associated protein 1" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-070212-1 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 OMA:HNLDGRN GeneTree:ENSGT00700000104255
EMBL:BX255969 EMBL:BX323045 IPI:IPI00961610
Ensembl:ENSDART00000104362 Bgee:F1QBG2 Uniprot:F1QBG2
Length = 407
Score = 193 (73.0 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 35/86 (40%), Positives = 52/86 (60%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK+T +S+G+GFV FKDP
Sbjct: 12 KLFVGGLDWSTTQETLRNYFSQYGEVVDCVIMKDKSTNQSRGFGFVKFKDPNCVRTVLDT 71
Query: 85 PSPVIDGRRAN---CNLASLGAHKTR 107
+DGR + C + KTR
Sbjct: 72 KPHNLDGRNIDPKPCTPRGMQPEKTR 97
Score = 134 (52.2 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 44/149 (29%), Positives = 68/149 (45%)
Query: 16 GDYNDTTFTK-IFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
G +D+ +K IFVGG+ +R YF +FG + E V+I D R +G+GF+TF+
Sbjct: 104 GSKSDSNKSKKIFVGGIPHNCGEAELRDYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEA 163
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTP-QHGGGRFRP------APGLVAP 127
++ +A I G++ A ++ P P Q G ++ P A G A
Sbjct: 164 EQSVDQAVNMHFHDIMGKKVEVKKAE--PRDSKAPAPGQLGANQWGPRAIISAANGWAAQ 221
Query: 128 PA--YHGGFSSSYVHQPTGQYTFPYSAYG 154
PA + + V TGQ P + YG
Sbjct: 222 PAPTWQQSYGPQGVWVSTGQ---PLAGYG 247
Score = 46 (21.3 bits), Expect = 1.8e-17, Sum P(2) = 1.8e-17
Identities = 21/56 (37%), Positives = 23/56 (41%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHG----GF------SSSYVHQPTGQYTFPYSAYGY 155
TPQ G +F A G+ PPA G GF S Q F YS YGY
Sbjct: 300 TPQ--GDQF-VAQGMPPPPATPGAGPLGFAPATTPSQDLSKAAPAQPDFSYSQYGY 352
>UNIPROTKB|F1PA19 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AAEX03007693 EMBL:AAEX03007694
Ensembl:ENSCAFT00000000377 OMA:GNDSSYG Uniprot:F1PA19
Length = 264
Score = 172 (65.6 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 28/68 (41%), Positives = 45/68 (66%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 60
Query: 85 PSPVIDGR 92
+DGR
Sbjct: 61 KEHRLDGR 68
Score = 124 (48.7 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF +FGEI EA+ + D + + +G+ F+TFK+ E + +
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 143
Query: 84 NPSPVIDGRRANCNL 98
I G + C L
Sbjct: 144 KKFHTISGSK-RCGL 157
Score = 53 (23.7 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 130 YHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQ 176
++ G+ + P G + YS YGY GY Y+ N YG Q
Sbjct: 208 WNQGYGYQQGYGP-GYGGYDYSPYGYYGYGPGYDYSQGSTN-YGKSQ 252
>TAIR|locus:2086325 [details] [associations]
symbol:AT3G15010 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009693
GO:GO:0006952 GO:GO:0005730 GO:GO:0000166 GO:GO:0008219
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150 EMBL:AP000370
HSSP:P09651 KO:K12741 eggNOG:NOG300400 EMBL:AY063846 EMBL:AY091228
EMBL:AK316731 IPI:IPI00519744 RefSeq:NP_188119.1 RefSeq:NP_974317.1
UniGene:At.27179 ProteinModelPortal:Q9LKA4 SMR:Q9LKA4 IntAct:Q9LKA4
PaxDb:Q9LKA4 PRIDE:Q9LKA4 EnsemblPlants:AT3G15010.1
EnsemblPlants:AT3G15010.2 GeneID:820730 KEGG:ath:AT3G15010
TAIR:At3g15010 HOGENOM:HOG000090575 InParanoid:Q9LKA4 OMA:MGAQYGG
PhylomeDB:Q9LKA4 ProtClustDB:CLSN2685088 ArrayExpress:Q9LKA4
Genevestigator:Q9LKA4 Uniprot:Q9LKA4
Length = 404
Score = 185 (70.2 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 39/88 (44%), Positives = 55/88 (62%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
+D + K+F+ GLA +T + +R F +G++ EA+VI DK TG+SKGYGFVTF + A
Sbjct: 70 SDISQRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVILDKVTGKSKGYGFVTFMHVDGA 129
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKT 106
+ A + PS IDGR LA+ G T
Sbjct: 130 LLALKEPSKKIDGRVTVTQLAASGNQGT 157
Score = 158 (60.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 49/164 (29%), Positives = 77/164 (46%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
D + KI+V + ++ D + +F +G++ E + DK TG+S+G+ +K E A
Sbjct: 163 DISMRKIYVANVPFDMPADRLLNHFMAYGDVEEGPLGFDKVTGKSRGFALFVYKTAEGAQ 222
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRP--PTPQHGG---GRFR-PAPGLVAPPAYHG- 132
A +P VIDG+ NC LA G +P P Q GG G G+V P +G
Sbjct: 223 AALADPVKVIDGKHLNCKLAVDGKKGGKPGMPQAQDGGSGHGHVHGEGMGMVRPAGPYGA 282
Query: 133 -GFSSSYVHQPTGQYTF-PYSAYGYTGYSQDTMYALNYYNIYGG 174
G S+Y G Y+ P + + + +S + + Y YGG
Sbjct: 283 AGGISAY-----GGYSGGPPAHHMNSTHSSMGVGSAGYGGHYGG 321
Score = 52 (23.4 bits), Expect = 3.3e-17, Sum P(2) = 3.3e-17
Identities = 17/48 (35%), Positives = 21/48 (43%)
Query: 131 HGGFSSSYVHQPTG--QYTFPYSAY-GYTGYSQDTMYALNYYNIYGGQ 175
+GG Y TG QY P S+ G GY + Y L+ Y GQ
Sbjct: 331 YGGLGGGYGGPGTGSGQYRMPPSSMPGGGGYPESGHYGLSSSAGYPGQ 378
>TAIR|locus:2055956 [details] [associations]
symbol:UBA1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0017091 "AU-rich
element binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0048255
IPI:IPI00520548 RefSeq:NP_850021.1 UniGene:At.25483
ProteinModelPortal:F4IIL5 SMR:F4IIL5 EnsemblPlants:AT2G22090.2
GeneID:816744 KEGG:ath:AT2G22090 OMA:WETTRET Uniprot:F4IIL5
Length = 347
Score = 212 (79.7 bits), Expect = 4.5e-17, P = 4.5e-17
Identities = 58/156 (37%), Positives = 76/156 (48%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
D T KIFV GL WET R+T+ FE +GEI E V+ DK TG++KG+GFV FK + A
Sbjct: 100 DVTHRKIFVYGLPWETTRETLVGVFEGYGEIEECTVVIDKATGKAKGFGFVMFKTRKGAK 159
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVA--PPAYHGGFSSS 137
A + P I R A C LAS+G P G G +P P ++ A HG
Sbjct: 160 EALKEPKKRILNRTATCQLASMG------PAAS-GKGHDQPGPVKISMGSMANHG---QP 209
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
Q GQ+ F + + M Y+ +YG
Sbjct: 210 QQQQVQGQHVFNGGGMAASPF----MLGNQYHPLYG 241
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 193 (73.0 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 40/95 (42%), Positives = 58/95 (61%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+WET ++ + RYF +FG+I++ VV+ + +GRS+G+GFVTF DP QN
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRPPTPQHGGG 116
+DGR + CN +L P+ GGG
Sbjct: 68 GPHTLDGRTIDPKPCNPRTL-------QKPKKGGG 95
Score = 110 (43.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 20/76 (26%), Positives = 46/76 (60%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL +R +F ++G++ E V++ D+ +S+G+GF++F++ E+++ N
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEE-ESSVEHVTN 155
Query: 85 PSPV-IDGRRANCNLA 99
+ ++G++ A
Sbjct: 156 ERYINLNGKQVEIKKA 171
Score = 43 (20.2 bits), Expect = 4.5e-17, Sum P(2) = 4.5e-17
Identities = 18/56 (32%), Positives = 19/56 (33%)
Query: 106 TRPPTPQHGGGRFRPAP--GLVAPPAYHGGFSSSYVHQPT-GQYTFPYSAYGYTGY 158
T P Q+G G P G APP G P Y P GY GY
Sbjct: 241 TSPQQQQYGYGNSGPGSYQGWGAPPGPQGP-------PPQWSNYAGPQQTQGYGGY 289
>TAIR|locus:2129590 [details] [associations]
symbol:AT4G14300 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:Z97335 EMBL:AL161538 GO:GO:0003676
GO:GO:0030529 eggNOG:COG0724 HOGENOM:HOG000234441 KO:K14411
HSSP:Q61474 EMBL:AJ303457 EMBL:AK226323 IPI:IPI00517003 PIR:G71404
RefSeq:NP_193166.2 UniGene:At.33295 ProteinModelPortal:Q8W034
SMR:Q8W034 IntAct:Q8W034 MINT:MINT-1163850 STRING:Q8W034
PaxDb:O23288 PRIDE:Q8W034 EnsemblPlants:AT4G14300.1 GeneID:827071
KEGG:ath:AT4G14300 TAIR:At4g14300 InParanoid:Q8W034 OMA:YGATNIP
PhylomeDB:Q8W034 ProtClustDB:CLSN2913105 Genevestigator:Q8W034
Uniprot:Q8W034
Length = 411
Score = 177 (67.4 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 34/80 (42%), Positives = 48/80 (60%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
D+ K+FVGG++WET D +R +F +GE+ +A+V+ DK TGR +G+GFV F DP
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 80 RACQNPSPVIDGRRANCNLA 99
R Q ID R + A
Sbjct: 62 RVLQEKHS-IDTREVDVKRA 80
Score = 146 (56.5 bits), Expect = 5.7e-08, P = 5.7e-08
Identities = 54/171 (31%), Positives = 71/171 (41%)
Query: 16 GD-YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
GD YN T KIFVGGL + R+YFE +G + + ++ D+ T R +G+GFV+F
Sbjct: 103 GDAYNKTK--KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDS 160
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+A + G++ A K P GGGR G Y GG
Sbjct: 161 EDAVDSVLHKTFHDLSGKQVEVKRA---LPKDANPG---GGGRSMGGGGSGGYQGY-GGN 213
Query: 135 SSSY----------VHQPTGQYTFPYSAYGY-TGYSQDTMYALNYYNIYGG 174
SSY HQ G Y + GY GY + A Y YGG
Sbjct: 214 ESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYGAGYGNGSNGA--GYGAYGG 262
Score = 56 (24.8 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 129 AYHGGFSSSYVHQPTGQYTFPYS--AYGYTGYS-QDTMYALNY-YNIYGGQ 175
A H G+ PT Q YS YGY GYS D+ Y Y + GG+
Sbjct: 317 AAHSGYGVPGAAPPT-QSPSGYSNQGYGYGGYSGSDSGYGNQAAYGVVGGR 366
>UNIPROTKB|Q99729 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0003729 "mRNA binding"
evidence=TAS] [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0043565 "sequence-specific DNA binding" evidence=ISS]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0001837
EMBL:CH471165 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K13044 InterPro:IPR012956 Pfam:PF08143
EMBL:M65028 EMBL:U76713 EMBL:AK054600 EMBL:AK097657 EMBL:BC001616
EMBL:BC002625 EMBL:BC004561 EMBL:BC009359 EMBL:BC036708
IPI:IPI00106509 IPI:IPI00329355 IPI:IPI00334587 IPI:IPI00334713
PIR:S17563 RefSeq:NP_004490.2 RefSeq:NP_112556.2 UniGene:Hs.591731
UniGene:Hs.715055 PDB:3S7R PDBsum:3S7R ProteinModelPortal:Q99729
SMR:Q99729 IntAct:Q99729 MINT:MINT-4537784 STRING:Q99729
PhosphoSite:Q99729 DMDM:158523286 SWISS-2DPAGE:Q99729 PaxDb:Q99729
PRIDE:Q99729 Ensembl:ENST00000355836 Ensembl:ENST00000358344
Ensembl:ENST00000504898 Ensembl:ENST00000506259 GeneID:3182
KEGG:hsa:3182 UCSC:uc003miu.3 UCSC:uc003miv.3 CTD:3182
GeneCards:GC05P177631 HGNC:HGNC:5034 HPA:HPA046688 MIM:602688
neXtProt:NX_Q99729 PharmGKB:PA162391196 InParanoid:Q99729
OMA:FILFKDP OrthoDB:EOG42BX9K ChiTaRS:HNRNPAB
EvolutionaryTrace:Q99729 GenomeRNAi:3182 NextBio:12628
ArrayExpress:Q99729 Bgee:Q99729 CleanEx:HS_HNRNPAB
Genevestigator:Q99729 GermOnline:ENSG00000197451 Uniprot:Q99729
Length = 332
Score = 174 (66.3 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 64 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASV 123
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 124 EKVLDQKEHRLDGR 137
Score = 126 (49.4 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 48/155 (30%), Positives = 67/155 (43%)
Query: 25 KIFVGGLAWETQ-RDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRAC 82
KIFVGGL E+ + +R YF +FGEI EA+ + D + +G+ F+TFK+ E +
Sbjct: 154 KIFVGGLNPESPTEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 83 QNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRFRPAPGLVAPPAYHGGFSSSYV-H 140
+ + G + +A K Q+G GGR G GG S +
Sbjct: 213 EKKFHTVSGSKCEIKVAQ---PKEVYQQQQYGSGGRGNRNRGNRGSGGGGGGGGQSQSWN 269
Query: 141 QPTGQYTFPYSAYGYT-GYSQDTM-YALNYYNIYG 173
Q G Y YGY GY Y + Y YG
Sbjct: 270 QGYGNYW--NQGYGYQQGYGPGYGGYDYSPYGYYG 302
Score = 53 (23.7 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 130 YHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQ 176
++ G+ + P G + YS YGY GY Y+ N YG Q
Sbjct: 276 WNQGYGYQQGYGP-GYGGYDYSPYGYYGYGPGYDYSQGSTN-YGKSQ 320
>UNIPROTKB|E2R771 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:AAEX03026334 RefSeq:XP_863171.1 ProteinModelPortal:E2R771
Ensembl:ENSCAFT00000024556 GeneID:609457 KEGG:cfa:609457
Uniprot:E2R771
Length = 162
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 59/160 (36%), Positives = 77/160 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL + T + +F FG I E VV+ D+ T RS+G+GF+TF DPE A MRA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFRSFGPISEVVVVKDRETQRSRGFGFITFTDPEHASDAMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPT-PQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
S +DGR+ + A A TR HG GR G Y G Y
Sbjct: 67 MNGES--LDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGG--GDQGYGSG---RYDS 119
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMY---ALNYYNIYGGQQF 177
+P G Y + Y YGY GY + Y + Y+ Y G +
Sbjct: 120 RPGG-YGYGYG-YGY-GYGRSRDYGGRSQGGYDRYSGGNY 156
>DICTYBASE|DDB_G0275971 [details] [associations]
symbol:DDB_G0275971 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0275971
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000013
eggNOG:NOG260394 RefSeq:XP_643377.1 ProteinModelPortal:Q552K5
EnsemblProtists:DDB0203538 GeneID:8620261 KEGG:ddi:DDB_G0275971
InParanoid:Q552K5 Uniprot:Q552K5
Length = 699
Score = 173 (66.0 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
TKIFVGG++W+ +T++ YF QFG +LE +I D NT +SKGYGF+TF++ E ++ +
Sbjct: 103 TKIFVGGISWKADENTLKTYFLQFGNVLECKIIMDYNTNKSKGYGFITFEN-EDSIEKVR 161
Query: 84 NPSPVIDGRRAN 95
+ + G+ N
Sbjct: 162 TSNLLFMGKNMN 173
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 216 PQMLQYGPFLPHH 228
P M + P +PHH
Sbjct: 476 PPMNTHHPHIPHH 488
Score = 38 (18.4 bits), Expect = 1.4e-15, Sum P(3) = 1.4e-15
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 140 HQPTG--QYTFPYSAYG---YTGYSQDTMYALNYYN 170
H G QY +P S YG Y + Y ++Y N
Sbjct: 440 HMMNGGIQYYYP-SPYGEPFYQTHPHHPSYQISYQN 474
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 52/152 (34%), Positives = 76/152 (50%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
+KIFVGG+++ T +R F ++GE+++A +I D+ TGRS+G+ FVTF E A A Q
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 84 NPSPVIDGRRANCNLAS-LGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQP 142
+ GRR N A+ G+ GGG G AP +GG + Y
Sbjct: 94 LDGQDLHGRRIRVNYATERGSGFGGRGFGGPGGGYGASDGGYGAPAGGYGGGAGGY---- 149
Query: 143 TGQYTFPYSAYGYTGYSQDTMYALNYYNIYGG 174
G ++ +A G GY ++ Y N YGG
Sbjct: 150 GGNSSYSGNAGGGGGYGGNSSYGGNAGG-YGG 180
>TAIR|locus:2050992 [details] [associations]
symbol:AT2G33410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC002332 HOGENOM:HOG000234441 KO:K14411 HSSP:Q61474
ProtClustDB:CLSN2913105 OMA:GNDSSYG EMBL:AY136298 EMBL:BT000416
IPI:IPI00531202 PIR:B84745 RefSeq:NP_180899.1 UniGene:At.22217
ProteinModelPortal:O22791 SMR:O22791 IntAct:O22791 STRING:O22791
PRIDE:O22791 ProMEX:O22791 EnsemblPlants:AT2G33410.1 GeneID:817905
KEGG:ath:AT2G33410 TAIR:At2g33410 InParanoid:O22791
PhylomeDB:O22791 ArrayExpress:O22791 Genevestigator:O22791
Uniprot:O22791
Length = 404
Score = 172 (65.6 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 30/68 (44%), Positives = 44/68 (64%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GG++W+T + +R YF FGE+L+ V+ +K TGR +G+GFV F DP R Q+
Sbjct: 7 KLFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQD 66
Query: 85 PSPVIDGR 92
ID R
Sbjct: 67 KHH-IDNR 73
Score = 159 (61.0 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 49/157 (31%), Positives = 68/157 (43%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL D R YFE +G + +AV++ D+ T R +G+GFV+F ++
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHK 170
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQ-PT 143
++G++ A K P GGGR G P Y G S Y + +
Sbjct: 171 TFHDLNGKQVEVKRA---LPKDANPGIASGGGRGSGGAG--GFPGYGGSGGSGYEGRVDS 225
Query: 144 GQYTFP------YSAYGYTGYSQDTMYALNYYNIYGG 174
+Y P Y YG +GY Y N YGG
Sbjct: 226 NRYMQPQNTGSGYPPYGGSGYGTGYGYGSNGVG-YGG 261
Score = 47 (21.6 bits), Expect = 3.0e-15, Sum P(2) = 3.0e-15
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 123 GLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYAL-NYYNIYGGQ 175
G AP GG S+ + Q + YGY G D+ Y + Y GG+
Sbjct: 305 GNAAPWGGSGGPGSAVMGQAGASAGYGSQGYGYGG--NDSSYGTPSAYGAVGGR 356
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 49/135 (36%), Positives = 69/135 (51%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T + ++R F QFG+++++ +I D+ +GRS+G+GFVTFKD +A A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 85 PS-PVIDGRRANCNLA-SLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQP 142
+ +DGR N A S G+ GGG +R G Y GG Y
Sbjct: 67 MNGKELDGRVITVNEAQSRGSGGGGGGRGGSGGG-YRSGGG----GGYSGGGGGGYSGGG 121
Query: 143 TGQYTFPYSAYGYTG 157
G Y YG G
Sbjct: 122 GGGYERRSGGYGSGG 136
>ZFIN|ZDB-GENE-040426-2516 [details] [associations]
symbol:zgc:77052 "zgc:77052" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2516 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 InterPro:IPR012956
Pfam:PF08143 OrthoDB:EOG42BX9K EMBL:FP085391 EMBL:BC066681
IPI:IPI00497482 RefSeq:NP_998467.1 UniGene:Dr.75633 SMR:Q6NYA1
STRING:Q6NYA1 Ensembl:ENSDART00000098408 GeneID:406594
KEGG:dre:406594 OMA:EIKTYFS NextBio:20818146 Uniprot:Q6NYA1
Length = 309
Score = 190 (71.9 bits), Expect = 8.3e-15, P = 8.3e-15
Identities = 45/156 (28%), Positives = 75/156 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FK+ ++ R Q
Sbjct: 46 KMFVGGLSWDTSKKDLKDYFSKFGEVMDCTIKMDSNTGRSRGFGFILFKESDSVDRVLQQ 105
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSS-SYVHQPT 143
+DGR+ + A A K P GG P Y G F + PT
Sbjct: 106 KEHRLDGRQIDPKRAM--AIKKEPVKKIFVGG-LNPETTEEKIREYFGSFGEIETIELPT 162
Query: 144 GQYTFPYSAYGYTGYSQD----TMYALNYYNIYGGQ 175
T + + + ++ + Y+N+ G +
Sbjct: 163 DPKTSKRRGFVFITFKEEFAVKKILEKKYHNVCGSK 198
Score = 152 (58.6 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 48/154 (31%), Positives = 66/154 (42%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL ET + +R YF FGEI + TD T + +G+ F+TFK+ A + +
Sbjct: 130 KIFVGGLNPETTEEKIREYFGSFGEIETIELPTDPKTSKRRGFVFITFKEEFAVKKILEK 189
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGG-----RFRPAPGLVAPPAYHGGFSSSYV 139
+ G + +A + GGG R R PG Y+ ++ Y
Sbjct: 190 KYHNVCGSKCEIKIAQPKEIYQQQQFGARGGGFGGRGRGRGGPGQSWNQGYNNYWNQGYG 249
Query: 140 HQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
Q G Y GY GY Y+ YY YG
Sbjct: 250 GQGYG-YGGQQGYGGYGGYGNYD-YSSGYYG-YG 280
>UNIPROTKB|H0YA61 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL136305 HGNC:HGNC:21539 Ensembl:ENST00000509686
Bgee:H0YA61 Uniprot:H0YA61
Length = 80
Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 40/74 (54%), Positives = 50/74 (67%)
Query: 55 VITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG 114
VITD+ TG+S+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA K R P
Sbjct: 1 VITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFA 59
Query: 115 GGRFRPAPGLVAPP 128
G + P L+ P
Sbjct: 60 FGVQQLHPALIQRP 73
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 162 (62.1 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 33/86 (38%), Positives = 55/86 (63%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL +ET +++ + F ++G++ E VV+ D+ + RS+G+GFVTF++PE A M A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTR 107
S +DGR+ + A ++ R
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSNDRR 90
Score = 38 (18.4 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 130 YHGGFSSSYVHQPTGQYTFPYSAY 153
Y+G SY + G Y Y +Y
Sbjct: 139 YYGRSHGSYGDRSGGSYRDSYDSY 162
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 188 (71.2 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 50/151 (33%), Positives = 73/151 (48%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
+K+F+GG+A+ D++R F ++GE+++ VI D+ TGRS+G+GFVTF EAA A Q
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPT 143
+DGR + + + R GGG + G +GG + Y
Sbjct: 100 ----ALDGRDLHGRVVKVNYANDRTSGGGFGGGGYGGGGGGYGGSGGYGGGAGGY----G 151
Query: 144 GQYTFPYSAYGYTGYSQDTMYALNYYNIYGG 174
G + A GY G S Y N YGG
Sbjct: 152 GSGGYGGGAGGYGGNSGGG-YGGNAAGGYGG 181
>RGD|620145 [details] [associations]
symbol:Rbm3 "RNA binding motif (RNP1, RRM) protein 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006412 "translation"
evidence=ISO] [GO:0006417 "regulation of translation"
evidence=ISO;ISS] [GO:0006950 "response to stress" evidence=IEA]
[GO:0009409 "response to cold" evidence=ISO] [GO:0015934 "large
ribosomal subunit" evidence=IDA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0043023 "ribosomal large
subunit binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620145 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727
eggNOG:COG0724 HOVERGEN:HBG107480 HSSP:P09651 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186
EMBL:FM093406 EMBL:AF355190 IPI:IPI00367437 IPI:IPI00955177
RefSeq:NP_446148.1 UniGene:Rn.18057 ProteinModelPortal:Q925G0
MINT:MINT-4611770 STRING:Q925G0 PRIDE:Q925G0 GeneID:114488
KEGG:rno:114488 UCSC:RGD:620145 InParanoid:Q925G0 NextBio:618509
Genevestigator:Q925G0 Uniprot:Q925G0
Length = 155
Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 57/157 (36%), Positives = 75/157 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL + T + +F FG I E VV+ D+ T RS+G+GF+TF +PE A MRA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPT-PQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
S +DGR+ + A A TR HG GR G Y G Y
Sbjct: 67 MNGES--LDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGG--GDQGYGSG---RYDS 119
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQF 177
+P G Y YGY G S+D + Y+ Y G +
Sbjct: 120 RPGG-----YG-YGY-GRSRDYSGSQGGYDRYSGGNY 149
>UNIPROTKB|K7EQ02 [details] [associations]
symbol:DAZAP1 "DAZ-associated protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:2683 EMBL:AC005329 EMBL:AC027307
Ensembl:ENST00000592453 Uniprot:K7EQ02
Length = 225
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGR 92
+DGR
Sbjct: 71 RPHTLDGR 78
Score = 162 (62.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 46/149 (30%), Positives = 70/149 (46%)
Query: 5 RPLQMVGGNHPGDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
RP + G N G +D + + KIFVGG+ +R YF++FG + E V+I D R
Sbjct: 71 RPHTLDGRNQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQR 130
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP-TP--QHGGGRFRP 120
+G+GF+TF+D ++ +A I G++ A K++ P P G R P
Sbjct: 131 PRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVP 190
Query: 121 --APGLVA--PPAYHGGFSSSYVHQPTGQ 145
A G PP + G+ + P GQ
Sbjct: 191 NAANGWAGQPPPTWQQGYGPQGMWVPAGQ 219
>UNIPROTKB|J9P972 [details] [associations]
symbol:DAZAP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104255 EMBL:AAEX03012650 EMBL:AAEX03012651
Ensembl:ENSCAFT00000049246 Uniprot:J9P972
Length = 258
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 31/68 (45%), Positives = 46/68 (67%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 56 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 115
Query: 85 PSPVIDGR 92
+DGR
Sbjct: 116 RPHTLDGR 123
Score = 136 (52.9 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 44/142 (30%), Positives = 67/142 (47%)
Query: 5 RPLQMVGGN-HP---GDYNDTTFT-KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDK 59
RP + G N P G +D + + KIFVGG+ +R YF++FG + E V+I D
Sbjct: 116 RPHTLDGRNIDPKQKGPRSDNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA 175
Query: 60 NTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP-TP--QHGGG 116
R +G+GF+TF+D ++ +A I G++ A K++ P P G
Sbjct: 176 EKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGS 235
Query: 117 RFRP--APGLVA--PPAYHGGF 134
R P A G PP + G+
Sbjct: 236 RVVPNAANGWAGQPPPTWQQGY 257
>UNIPROTKB|F6RBQ9 [details] [associations]
symbol:F6RBQ9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043023 "ribosomal large subunit binding" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0006412
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 GO:GO:0035196 GO:GO:0043023
OMA:SDAMRAM EMBL:DAAA02073061 IPI:IPI00691523
Ensembl:ENSBTAT00000024034 Uniprot:F6RBQ9
Length = 160
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 56/143 (39%), Positives = 73/143 (51%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL + T + +F FG I E VV+ D+ T RS+G+GF+TF +PE A MRA
Sbjct: 7 KLFVGGLNFNTDERALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGG---GRFRPAPGLVAPPAYHGGFSSSY 138
S +DGR+ + A A +R GG GR P G Y G Y
Sbjct: 67 MNGES--LDGRQIRVDHAGKSARGSRGGA--FGGYERGRGYPRGG--GDQGYGSG---RY 117
Query: 139 VHQPTGQYTFPYSAYGYTGYSQD 161
++P G Y F Y YGY G S+D
Sbjct: 118 DNRP-GAYGFGYG-YGY-GRSRD 137
>UNIPROTKB|G3V6P6 [details] [associations]
symbol:Rbm3 "Putative RNA-binding protein 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IEA] [GO:0043023 "ribosomal large
subunit binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620145 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
RefSeq:NP_446148.1 UniGene:Rn.18057 GeneID:114488 KEGG:rno:114488
NextBio:618509 EMBL:CH474078 Ensembl:ENSRNOT00000007367
Uniprot:G3V6P6
Length = 156
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 57/156 (36%), Positives = 75/156 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL + T + +F FG I E VV+ D+ T RS+G+GF+TF +PE A MRA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPT-PQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
S +DGR+ + A A TR HG GR G Y G Y
Sbjct: 67 MNGES--LDGRQIRVDHAGKSARGTRGGAFGAHGRGRSYSRGG--GDQGYGSG---RYDS 119
Query: 141 QPTGQYTFPYS-AYGYTGYSQ---DTMYALNYYNIY 172
+P G Y + Y + Y+G SQ D NY + Y
Sbjct: 120 RPGG-YGYGYGRSRDYSGRSQGGYDRYSGGNYRDNY 154
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 37/94 (39%), Positives = 58/94 (61%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
+K+FVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+F ++A A +
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 84 N-PSPVIDGRRANCNLASLGAHKTRPPTPQHGGG 116
++GR+ NLA+ ++ P GGG
Sbjct: 95 EMDGKELNGRQIRVNLAT---ERSSAPRSSFGGG 125
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 38/94 (40%), Positives = 55/94 (58%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
TK+F+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D AA A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQ-HGGG 116
+DG+ N + RP P+ +GGG
Sbjct: 95 E----MDGKELNGRHIRVNPANDRPSAPRAYGGG 124
>UNIPROTKB|I3LQ36 [details] [associations]
symbol:I3LQ36 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU210877
Ensembl:ENSSSCT00000005974 Uniprot:I3LQ36
Length = 161
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 56/157 (35%), Positives = 76/157 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL + T + +F FG I E VV+ D T RS+G+GF+TF +PE A MRA
Sbjct: 7 KLFVGGLNFNTYEQALEDHFSSFGPIFEVVVVKDWETRRSQGFGFITFTNPEHASNAMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPTPQ-HGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
S +DGR+ + + A A TR + HG G R G H + SS
Sbjct: 67 TNGES--LDGRQIHVDHAGKSARGTRGGAFEAHGHGYSR-GRG-------HQSYGSSRYD 116
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQF 177
G Y + YGY G S+D + Y+ Y G +
Sbjct: 117 SLPGGYGY---GYGY-GRSRDYGSSQGSYDRYSGGNY 149
>TAIR|locus:2047685 [details] [associations]
symbol:AT2G19380 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003604 InterPro:IPR012677
InterPro:IPR015880 Pfam:PF00076 PROSITE:PS50102 SMART:SM00355
SMART:SM00360 SMART:SM00451 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005622 EMBL:AC003058 eggNOG:NOG253936 InterPro:IPR014898
Pfam:PF08790 HSSP:Q60900 IPI:IPI00545777 PIR:T01286
RefSeq:NP_565450.1 UniGene:At.50083 ProteinModelPortal:O64571
SMR:O64571 PRIDE:O64571 EnsemblPlants:AT2G19380.1 GeneID:816456
KEGG:ath:AT2G19380 TAIR:At2g19380 HOGENOM:HOG000114996
InParanoid:O64571 OMA:ESADRDI PhylomeDB:O64571
ProtClustDB:CLSN2914947 ArrayExpress:O64571 Genevestigator:O64571
Uniprot:O64571
Length = 613
Score = 179 (68.1 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 36/81 (44%), Positives = 47/81 (58%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
D IFV G W+T ++ ++ FE +GEI E V+ DK+TGR KGYGFV FK + A
Sbjct: 404 DIAQRNIFVRGFGWDTTQENLKTAFESYGEIEECSVVMDKDTGRGKGYGFVMFKTRKGAR 463
Query: 80 RACQNPSPVIDGRRANCNLAS 100
A + P + R CNLAS
Sbjct: 464 EALKRPEKRMYNRIVVCNLAS 484
Score = 36 (17.7 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 111 PQHG--GGRFRPAPGLVAPPAYHGGFSSSY 138
P +G G G + PP H G + Y
Sbjct: 573 PNYGMFGSGMMTNQGSMLPPPNHLGMAGQY 602
>UNIPROTKB|Q5ZME1 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0043047 "single-stranded telomeric DNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0097157 GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF CTD:3181
GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS EMBL:AC140791
EMBL:AJ719443 IPI:IPI00651336 RefSeq:NP_001026156.1
UniGene:Gga.22131 SMR:Q5ZME1 IntAct:Q5ZME1 STRING:Q5ZME1
Ensembl:ENSGALT00000017975 GeneID:420627 KEGG:gga:420627
InParanoid:Q5ZME1 NextBio:20823513 Uniprot:Q5ZME1
Length = 349
Score = 164 (62.8 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 36/88 (40%), Positives = 57/88 (64%)
Query: 9 MVGGNHPGDYNDTT-FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGY 67
M G+ D+ + F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+
Sbjct: 1 MPRGDRESDWREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGF 60
Query: 68 GFVTFK---DPEAAMRACQNPSPVIDGR 92
GFVTF + +AAM A P IDGR
Sbjct: 61 GFVTFSSMAEVDAAMAA--RPH-TIDGR 85
Score = 148 (57.2 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 34/105 (32%), Positives = 53/105 (50%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 101 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 158
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + G GG F
Sbjct: 159 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQNSRSGRGGNF 203
Score = 61 (26.5 bits), Expect = 4.4e-14, Sum P(2) = 4.4e-14
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y YN
Sbjct: 248 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 303
Score = 44 (20.5 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 255 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPM 312
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 313 KSGNFGGSR 321
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 189 (71.6 bits), Expect = 4.5e-14, P = 4.5e-14
Identities = 35/74 (47%), Positives = 49/74 (66%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL WET D++R YFEQFGE+L+ V+ D TGRS+G+GF+TFK+P+
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 85 P----SPVIDGRRA 94
+ID +RA
Sbjct: 224 EHHLDGKIIDPKRA 237
Score = 152 (58.6 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 33/101 (32%), Positives = 53/101 (52%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
P + + T K+FVGG+ + + R +F QFG +L+A ++ DK+TGR +G+GFVT+++
Sbjct: 239 PREEQEKT-AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYEN 297
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAH-KTRPPTPQHG 114
A P I G+ A+ A + QHG
Sbjct: 298 ESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQHG 338
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 16 GDYNDTTFT--KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 73
G ND+ K+F+GGL+W+T D++R YF +FGEI E +V+ D T RS+G+GFVTF
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 74 DPEAAMRACQNPSPVIDGR 92
DP + + P +D +
Sbjct: 71 DPASVDKVLGQPHHELDSK 89
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
Identities = 56/156 (35%), Positives = 74/156 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE---AAMRA 81
K+FVGGL + T + +F FG I E VV+ D+ T RS+G+GF+TF +PE AMRA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPT-PQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
S +DGR+ + A A TR HG GR G Y G Y
Sbjct: 67 MNGES--LDGRQIRVDHAGKSARGTRGGGFGAHGRGRSYSRGG--GDQGYGSG--RYYDS 120
Query: 141 QPTGQYTFPYS-AYGYTGYSQ---DTMYALNYYNIY 172
+P G Y + Y + Y G +Q D NY + Y
Sbjct: 121 RPGG-YGYGYGRSRDYNGRNQGGYDRYSGGNYRDNY 155
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 46/112 (41%), Positives = 61/112 (54%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF-KDPEA--AMRA 81
K+F+GGLAW T D +R F ++G I EAVV+ D++T RS+G+GFV F +PEA AM A
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGG 133
N DGR + AS P ++GG + R A Y GG
Sbjct: 63 MNNQE--FDGRIIRVDKAS------ERPAARNGGFQGRGGYNSPADGGYRGG 106
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 32/76 (42%), Positives = 50/76 (65%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
+K+F+GGL+W+T D++R YF +FGEI E +V+ D T RS+G+GFVTF DP + +
Sbjct: 17 SKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLG 76
Query: 84 NPSPVIDGRRANCNLA 99
P +D + + +A
Sbjct: 77 QPHHELDSKTIDPKVA 92
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 187 (70.9 bits), Expect = 6.8e-14, P = 6.8e-14
Identities = 38/109 (34%), Positives = 64/109 (58%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GG++W+T + ++ YF ++G+++EAV++ D+ TGR++G+GF+ F DP A R +
Sbjct: 16 KLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIMD 75
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGG 133
+IDGR ++ A K P Q R L++P HGG
Sbjct: 76 KH-IIDGR-------TVEAKKAVPRDDQQVLKRHASPMHLISPS--HGG 114
Score = 156 (60.0 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 39/142 (27%), Positives = 61/142 (42%)
Query: 6 PLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSK 65
P+ ++ +H G+ KIFVGGL + YF+QFG I + VV+ D NT R +
Sbjct: 104 PMHLISPSHGGNGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPR 163
Query: 66 GYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPP--TPQHG-GGRFRPAP 122
G+GF+TF E+ ++G+ A + P +P G G + P
Sbjct: 164 GFGFITFDSEESVDMVLHKTFHELNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVP 223
Query: 123 GLVAPPAYHGGFSSSYVHQPTG 144
+ +Y F Y + G
Sbjct: 224 NRSSANSYFNSFPPGYNNNNLG 245
>UNIPROTKB|Q96DH6 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0048864 "stem cell
development" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 KO:K14411 OrthoDB:EOG48GW3J EMBL:BC001526
EMBL:BC017560 EMBL:AK093888 IPI:IPI00073713 IPI:IPI00167806
IPI:IPI00455161 RefSeq:NP_620412.1 RefSeq:NP_733839.1
UniGene:Hs.658922 ProteinModelPortal:Q96DH6 SMR:Q96DH6
IntAct:Q96DH6 STRING:Q96DH6 PhosphoSite:Q96DH6 DMDM:51316513
PaxDb:Q96DH6 PRIDE:Q96DH6 DNASU:124540 Ensembl:ENST00000284073
Ensembl:ENST00000322684 Ensembl:ENST00000579180 GeneID:124540
KEGG:hsa:124540 UCSC:uc002iuz.1 UCSC:uc002iva.3 CTD:124540
GeneCards:GC17P055334 HGNC:HGNC:18585 HPA:CAB022300 MIM:607897
neXtProt:NX_Q96DH6 PharmGKB:PA38590 InParanoid:Q96DH6 OMA:ISDCTIM
PhylomeDB:Q96DH6 ChiTaRS:MSI2 GenomeRNAi:124540 NextBio:81316
ArrayExpress:Q96DH6 Bgee:Q96DH6 CleanEx:HS_MSI2
Genevestigator:Q96DH6 GermOnline:ENSG00000153944 Uniprot:Q96DH6
Length = 328
Score = 182 (69.1 bits), Expect = 9.3e-14, P = 9.3e-14
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 16 GDYNDTTFT--KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 73
G ND+ K+F+GGL+W+T D++R YF +FGEI E +V+ D T RS+G+GFVTF
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 74 DPEAAMRACQNPSPVIDGRRANCNLA 99
DP + + P +D + + +A
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVA 96
Score = 175 (66.7 bits), Expect = 5.7e-13, P = 5.7e-13
Identities = 49/147 (33%), Positives = 75/147 (51%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF++ + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG------RFRPAPGLVAPP---AYH 131
C+ I+ + C A P T G F G++ P A +
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY 226
Query: 132 G----GFSSSYVHQPTGQYTFPYSAYG 154
G GF+ SY +Q G FP +AYG
Sbjct: 227 GRGYPGFAPSYGYQFPG---FPAAAYG 250
>TAIR|locus:2063177 [details] [associations]
symbol:AT2G41060 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009693
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006952 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0010150
EMBL:AC004261 eggNOG:COG0724 KO:K12741 HSSP:P09012 OMA:CHKANDG
EMBL:AF439844 EMBL:AY133583 EMBL:AK227158 IPI:IPI00545461
PIR:T02113 RefSeq:NP_001078035.1 RefSeq:NP_181639.1
UniGene:At.65764 ProteinModelPortal:O80678 SMR:O80678 IntAct:O80678
STRING:O80678 PaxDb:O80678 PRIDE:O80678 EnsemblPlants:AT2G41060.1
EnsemblPlants:AT2G41060.2 GeneID:818705 KEGG:ath:AT2G41060
TAIR:At2g41060 HOGENOM:HOG000070822 InParanoid:O80678
PhylomeDB:O80678 ProtClustDB:CLSN2683657 ArrayExpress:O80678
Genevestigator:O80678 Uniprot:O80678
Length = 451
Score = 185 (70.2 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 37/89 (41%), Positives = 51/89 (57%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
D KIFV GL W+T+ D++ F+Q+GEI + + DK +G+SKGYGF+ FK A
Sbjct: 124 DLVHRKIFVHGLGWDTKADSLIDAFKQYGEIEDCKCVVDKVSGQSKGYGFILFKSRSGAR 183
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRP 108
A + P I R C LAS+G + P
Sbjct: 184 NALKQPQKKIGTRMTACQLASIGPVQGNP 212
Score = 123 (48.4 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 25/89 (28%), Positives = 45/89 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KI+V ++ + + +F +FGEI E + DK TGR KG+ ++ E+A +A +
Sbjct: 228 KIYVSNVSADIDPQKLLEFFSRFGEIEEGPLGLDKATGRPKGFALFVYRSLESAKKALEE 287
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQH 113
P +G +C+ A+ G + + H
Sbjct: 288 PHKTFEGHVLHCHKANDGPKQVKQHQHNH 316
>MGI|MGI:1923876 [details] [associations]
symbol:Msi2 "musashi RNA-binding protein 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005844
"polysome" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0048864 "stem cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1923876 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005844 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 GO:GO:0048864 CTD:124540 ChiTaRS:MSI2
EMBL:AB056102 EMBL:AB056103 EMBL:BK001483 EMBL:AK049637
EMBL:AK049688 EMBL:AK051269 IPI:IPI00120924 IPI:IPI00462899
IPI:IPI00462900 RefSeq:NP_473384.1 UniGene:Mm.400451
UniGene:Mm.428433 UniGene:Mm.474737 ProteinModelPortal:Q920Q6
SMR:Q920Q6 STRING:Q920Q6 PhosphoSite:Q920Q6 PaxDb:Q920Q6
PRIDE:Q920Q6 Ensembl:ENSMUST00000092794 Ensembl:ENSMUST00000107909
GeneID:76626 KEGG:mmu:76626 UCSC:uc007kvn.2 InParanoid:Q920Q6
OMA:ENYISAA NextBio:345476 Bgee:Q920Q6 CleanEx:MM_MSI2
Genevestigator:Q920Q6 GermOnline:ENSMUSG00000069769 Uniprot:Q920Q6
Length = 346
Score = 182 (69.1 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 35/86 (40%), Positives = 53/86 (61%)
Query: 16 GDYNDTTFT--KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 73
G ND+ K+F+GGL+W+T D++R YF +FGEI E +V+ D T RS+G+GFVTF
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 74 DPEAAMRACQNPSPVIDGRRANCNLA 99
DP + + P +D + + +A
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVA 96
Score = 175 (66.7 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 49/147 (33%), Positives = 75/147 (51%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF++ + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG------RFRPAPGLVAPP---AYH 131
C+ I+ + C A P T G F G++ P A +
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY 226
Query: 132 G----GFSSSYVHQPTGQYTFPYSAYG 154
G GF+ SY +Q G FP +AYG
Sbjct: 227 GRGYPGFAPSYGYQFPG---FPAAAYG 250
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
Identities = 55/160 (34%), Positives = 74/160 (46%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL + T + +F FG I E VV+ D+ T RS+G+GF+TF +PE A MRA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQ 141
S +DGR+ + A A TR GG F G GG Y +
Sbjct: 67 MNGES--LDGRQIRVDHAGKSARGTR-------GGAF----GARGRGYSRGGGDQGYGN- 112
Query: 142 PTGQYTFPYSAYGYT-GYSQDTMY---ALNYYNIYGGQQF 177
G+Y YGY GY + Y + Y+ Y G +
Sbjct: 113 --GRYDSRPGGYGYGYGYGRSRDYGSRSQGSYDRYSGGNY 150
>TAIR|locus:2103670 [details] [associations]
symbol:UBA2A "UBP1-associated protein 2A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0017091 "AU-rich element
binding" evidence=IDA] [GO:0048255 "mRNA stabilization"
evidence=NAS] [GO:0009738 "abscisic acid mediated signaling
pathway" evidence=TAS] [GO:0006952 "defense response" evidence=IMP]
[GO:0008219 "cell death" evidence=IMP] [GO:0009693 "ethylene
biosynthetic process" evidence=IMP] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002686
GO:GO:0009693 GO:GO:0006952 GO:GO:0009738 GO:GO:0000166
GO:GO:0008219 Gene3D:3.30.70.330 GO:GO:0010150 GO:GO:0017091
GO:GO:0048255 EMBL:AL390921 HSSP:Q14103 KO:K12741
ProtClustDB:CLSN2683657 EMBL:AF367280 EMBL:AY037245 EMBL:AY091040
EMBL:AY117351 EMBL:AY133549 EMBL:BT006368 EMBL:AJ439404
IPI:IPI00547983 PIR:T51274 RefSeq:NP_001190109.1
RefSeq:NP_001190110.1 RefSeq:NP_567042.1 RefSeq:NP_850710.1
RefSeq:NP_850711.1 UniGene:At.9845 SMR:Q9LES2 IntAct:Q9LES2
STRING:Q9LES2 EnsemblPlants:AT3G56860.1 EnsemblPlants:AT3G56860.2
EnsemblPlants:AT3G56860.3 EnsemblPlants:AT3G56860.4
EnsemblPlants:AT3G56860.5 GeneID:824853 KEGG:ath:AT3G56860
TAIR:At3g56860 InParanoid:Q9LES2 OMA:ADEDPVH Genevestigator:Q9LES2
Uniprot:Q9LES2
Length = 478
Score = 184 (69.8 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 43/112 (38%), Positives = 57/112 (50%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
D KIFV GL W+T+ +T+ F+Q+GEI + + DK +G+SKGYGF+ +K A
Sbjct: 136 DPVHRKIFVHGLGWDTKTETLIEAFKQYGEIEDCKAVFDKISGKSKGYGFILYKSRSGAR 195
Query: 80 RACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYH 131
A + P I R C LAS G P GG A V+ PA H
Sbjct: 196 NALKQPQKKIGSRMTACQLASKG--------PVFGGAPI--AAAAVSAPAQH 237
Score = 129 (50.5 bits), Expect = 8.5e-06, P = 8.5e-06
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 6 PLQMVGGNHPGDYNDTTFT--KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
P+ + P ++++ T KI+V + E + +F +FGEI E + DK TGR
Sbjct: 225 PIAAAAVSAPAQHSNSEHTQKKIYVSNVGAELDPQKLLMFFSKFGEIEEGPLGLDKYTGR 284
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLA 99
KG+ +K E+A RA + P +G +C A
Sbjct: 285 PKGFCLFVYKSSESAKRALEEPHKTFEGHILHCQKA 320
>UNIPROTKB|H0YHB7 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC003982 HGNC:HGNC:7330 Ensembl:ENST00000546985 Uniprot:H0YHB7
Length = 233
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 45/147 (30%), Positives = 72/147 (48%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF+ + +
Sbjct: 38 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 97
Query: 81 ACQNPSPVIDGRRANCNLAS-------LGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGG 133
C+ I+ + C A G+ + R +G F G++ P +
Sbjct: 98 VCEIHFHEINNKMVECKKAQPKEVMSPTGSARGRSRVMPYGMDAFMLGIGMLGYPGFQAT 157
Query: 134 F--SSSYVHQPTGQYTFPYSAYGYTGY 158
S SY G YT+ + A T Y
Sbjct: 158 TYASRSYTGLAPG-YTYQFPAIPLTAY 183
>MGI|MGI:1099460 [details] [associations]
symbol:Rbm3 "RNA binding motif protein 3" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006412 "translation"
evidence=IDA] [GO:0006417 "regulation of translation" evidence=IDA]
[GO:0006950 "response to stress" evidence=IEA] [GO:0009409
"response to cold" evidence=IDA] [GO:0015934 "large ribosomal
subunit" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IDA] [GO:0042995 "cell projection" evidence=IEA]
[GO:0043023 "ribosomal large subunit binding" evidence=IPI]
[GO:0045727 "positive regulation of translation" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1099460 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0030425 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045727 eggNOG:COG0724
HOVERGEN:HBG107480 HOGENOM:HOG000276232 OrthoDB:EOG4HHP40
GO:GO:0035196 GO:GO:0043023 CTD:5935 KO:K13186 EMBL:AB016424
EMBL:AY052560 EMBL:BC006580 IPI:IPI00130883 RefSeq:NP_001159882.1
RefSeq:NP_001159883.1 UniGene:Mm.128512 UniGene:Mm.360569
ProteinModelPortal:O89086 SMR:O89086 IntAct:O89086 STRING:O89086
PhosphoSite:O89086 REPRODUCTION-2DPAGE:IPI00130883 PaxDb:O89086
PRIDE:O89086 Ensembl:ENSMUST00000115615 Ensembl:ENSMUST00000115619
Ensembl:ENSMUST00000115621 GeneID:19652 KEGG:mmu:19652
NextBio:296916 Bgee:O89086 CleanEx:MM_RBM3 Genevestigator:O89086
GermOnline:ENSMUSG00000031167 Uniprot:O89086
Length = 153
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 55/158 (34%), Positives = 76/158 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL + T + +F FG I E VV+ D+ T RS+G+GF+TF +PE A MRA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDAMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAY-HGGFSSSYVH 140
S +DGR+ + A A +R GGR R +Y GG Y
Sbjct: 67 MNGES--LDGRQIRVDHAGKSARGSRGGA---FGGRGR---------SYSRGGGDQGY-- 110
Query: 141 QPTGQYTFPYSAYGYT-GYSQDTMYALNYYNIYGGQQF 177
+G+Y YGY G S+D + Y+ Y G +
Sbjct: 111 -GSGRYDSRPGGYGYGYGRSRDYSGSQGGYDRYSGGNY 147
>FB|FBgn0260943 [details] [associations]
symbol:Rbp6 "RNA-binding protein 6" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
EMBL:AE014296 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 eggNOG:COG0724 KO:K14411 GeneTree:ENSGT00700000104255
GO:GO:0048864 OMA:ENYISAA EMBL:AY122226 EMBL:S51715 PIR:F48110
RefSeq:NP_001097631.1 RefSeq:NP_001097632.1 RefSeq:NP_730245.2
UniGene:Dm.22292 HSSP:Q61474 ProteinModelPortal:Q9VVE5 SMR:Q9VVE5
DIP:DIP-19056N IntAct:Q9VVE5 MINT:MINT-918255
EnsemblMetazoa:FBtr0075285 GeneID:39919 KEGG:dme:Dmel_CG32169
UCSC:CG32169-RA CTD:39919 FlyBase:FBgn0260943 InParanoid:Q9VVE5
OrthoDB:EOG4MSBF6 GenomeRNAi:39919 NextBio:816085 Bgee:Q9VVE5
Uniprot:Q9VVE5
Length = 369
Score = 181 (68.8 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 38/102 (37%), Positives = 63/102 (61%)
Query: 1 MSQQRPLQMV--GGNHPGDY-NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT 57
+ QQ+ Q V G P + ND K+F+GGL+W+T +++R YF ++G+I EA+V+
Sbjct: 5 IEQQQQQQQVELGPCSPSEVPNDPG--KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMK 62
Query: 58 DKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLA 99
D T RS+G+GFVTF DP + + + +DG++ + +A
Sbjct: 63 DPTTRRSRGFGFVTFSDPNSVDKVLTQGTHELDGKKVDPKVA 104
Score = 156 (60.0 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + ++ YFEQFG I +A+++ DK T R +G+GFVTF+ + +
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 81 ACQNPSPVIDGRRANCNLA 99
C+ I+ + C A
Sbjct: 175 VCEIHFHEINNKMVECKKA 193
>UNIPROTKB|F1NIB2 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 OMA:FILFKDP EMBL:AADN02028501
EMBL:AADN02028502 EMBL:AADN02028503 IPI:IPI00574172
Ensembl:ENSGALT00000023234 ArrayExpress:F1NIB2 Uniprot:F1NIB2
Length = 263
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+W+T + ++ YF +FGE+ + + D NTGRS+G+GF+ FK+P + + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 85 PSPVIDGR 92
+DGR
Sbjct: 61 KEHRLDGR 68
Score = 146 (56.5 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 45/155 (29%), Positives = 71/155 (45%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF +FGEI EA+ + D T + +G+ F+TFK+ + + +
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 84 NPSPVIDGRRANCNLAS-LGAHKTRPPTPQHG----GGRFRPAPGLVAPPAYHGGFSSSY 138
+ G + +A ++ + + G GGR R G ++ G+ + Y
Sbjct: 144 KKFHNVSGSKCEIKVAQPKEVYQQQQFSSGGGRGSYGGRGRGGRGGAQSQNWNQGYGN-Y 202
Query: 139 VHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
+Q G + Y GY GY YY YG
Sbjct: 203 WNQGYGNQGYGYQQ-GYGGYGGYDYSGYGYYG-YG 235
>UNIPROTKB|F1NIB4 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 EMBL:AADN02028501 EMBL:AADN02028502
EMBL:AADN02028503 IPI:IPI00603451 ProteinModelPortal:F1NIB4
Ensembl:ENSGALT00000023233 ArrayExpress:F1NIB4 Uniprot:F1NIB4
Length = 212
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+W+T + ++ YF +FGE+ + + D NTGRS+G+GF+ FK+P + + +
Sbjct: 1 KMFVGGLSWDTSKKDLKDYFTKFGEVTDCTIKMDPNTGRSRGFGFILFKEPGSVEKVLEQ 60
Query: 85 PSPVIDGR 92
+DGR
Sbjct: 61 KEHRLDGR 68
Score = 121 (47.7 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF +FGEI EA+ + D T + +G+ F+TFK+ + + +
Sbjct: 85 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKVLE 143
Query: 84 NPSPVIDGRRANCNLA 99
+ G + +A
Sbjct: 144 KKFHNVSGSKCEIKVA 159
>UNIPROTKB|B4DM51 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK297295 IPI:IPI00908857
SMR:B4DM51 STRING:B4DM51 Ensembl:ENST00000442934 Uniprot:B4DM51
Length = 267
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 49/147 (33%), Positives = 75/147 (51%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF++ + +
Sbjct: 46 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 105
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG------RFRPAPGLVAPP---AYH 131
C+ I+ + C A P T G F G++ P A +
Sbjct: 106 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY 165
Query: 132 G----GFSSSYVHQPTGQYTFPYSAYG 154
G GF+ SY +Q G FP +AYG
Sbjct: 166 GRGYPGFAPSYGYQFPG---FPAAAYG 189
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 182 (69.1 bits), Expect = 2.4e-13, P = 2.4e-13
Identities = 36/101 (35%), Positives = 59/101 (58%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GG++W+T + +R YF +G+++EAV++ D+ TGR++G+GF+ F DP + R +
Sbjct: 7 KLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMD 66
Query: 85 PSPVIDGRRANCNLAS-------LGAHKT--RPPTPQHGGG 116
+IDGR A L H + +P HGGG
Sbjct: 67 KH-IIDGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGG 106
Score = 140 (54.3 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 31/87 (35%), Positives = 46/87 (52%)
Query: 6 PLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSK 65
P+ ++ H G T KIFVGGL + + YF+QFG I + VV+ D NT R +
Sbjct: 95 PIHLMSPVHGG--GGRT-KKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPR 151
Query: 66 GYGFVTFKDPEAAMRACQNPSPVIDGR 92
G+GF+TF +A R ++G+
Sbjct: 152 GFGFITFDSDDAVDRVLHKTFHELNGK 178
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 178 (67.7 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 30/72 (41%), Positives = 48/72 (66%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T K+FVGGL+W+T + ++ YF +FGE+ + + D NTGRS+G+GF+ FKD E+ +
Sbjct: 61 TEGVKMFVGGLSWDTSKKDLKDYFAKFGEVSDCTIKMDPNTGRSRGFGFILFKDAESVDK 120
Query: 81 ACQNPSPVIDGR 92
++ +DGR
Sbjct: 121 VLEHKEHRLDGR 132
Score = 146 (56.5 bits), Expect = 3.4e-08, P = 3.4e-08
Identities = 45/152 (29%), Positives = 64/152 (42%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E D +R YFE FGEI EA+ + D T + +G+ F+TFK+ + + +
Sbjct: 149 KIFVGGLNPEAGEDQIREYFETFGEI-EAIELPMDPKTNKRRGFVFITFKEEDPVKKILE 207
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHGG--GRFRPAPGLVAPPAYHGGFSSSYVHQ 141
+ G + +A Q+GG G F G ++ Y +
Sbjct: 208 KKFHNVSGSKCEIKIAQ----PKEVYQQQYGGRGGSFGGRGGR-GGKGQGQNWNQGYNYW 262
Query: 142 PTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
G Y YG GY Y + Y YG
Sbjct: 263 NQGYGNQGYGGYGQQGYGGYGNYDYSGYGYYG 294
>MGI|MGI:1330294 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001837 "epithelial to mesenchymal transition"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003688 "DNA
replication origin binding" evidence=ISO] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=IDA] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1330294 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
GO:GO:0001837 UniGene:Mm.490267 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 OrthoDB:EOG42BX9K
ChiTaRS:HNRNPAB EMBL:D90151 EMBL:L36663 EMBL:AK076132
IPI:IPI00117288 PIR:JQ0448 RefSeq:NP_034578.1 UniGene:Mm.280842
ProteinModelPortal:Q99020 SMR:Q99020 DIP:DIP-31415N IntAct:Q99020
MINT:MINT-4132837 STRING:Q99020 PhosphoSite:Q99020 PaxDb:Q99020
PRIDE:Q99020 Ensembl:ENSMUST00000074669 GeneID:15384 KEGG:mmu:15384
NextBio:288056 Bgee:Q99020 Genevestigator:Q99020
GermOnline:ENSMUSG00000020358 Uniprot:Q99020
Length = 285
Score = 175 (66.7 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 70 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSV 129
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 130 EKVLDQKEHRLDGR 143
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF QFGEI EA+ + D + +G+ F+TFK+ + + +
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGR 117
+ G + +A K Q+G GGR
Sbjct: 219 KKFHTVSGSKCEIKVAQ---PKEVYQQQQYGSGGR 250
>UNIPROTKB|Q9QX80 [details] [associations]
symbol:Hnrnpab "Hnrpab protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295
HSSP:Q14103 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 CTD:3182 EMBL:AC105470
EMBL:AF216753 EMBL:BC066664 EMBL:AJ238855 IPI:IPI00212723
PIR:PC4375 PIR:PC4376 PIR:PC4377 RefSeq:NP_112620.2
RefSeq:XP_003750864.1 UniGene:Rn.1427 UniGene:Rn.217734 SMR:Q9QX80
STRING:Q9QX80 Ensembl:ENSRNOT00000033056 GeneID:100910156
GeneID:83498 KEGG:rno:100910156 KEGG:rno:83498 NextBio:615904
Genevestigator:Q9QX80 Uniprot:Q9QX80
Length = 285
Score = 175 (66.7 bits), Expect = 3.0e-13, P = 3.0e-13
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 70 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSV 129
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 130 EKVLDQKEHRLDGR 143
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF QFGEI EA+ + D + +G+ F+TFK+ + + +
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGR 117
+ G + +A K Q+G GGR
Sbjct: 219 KKFHTVSGSKCEIKVAQ---PKEVYQQQQYGSGGR 250
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 42/115 (36%), Positives = 59/115 (51%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T + F Q+G+++++ +I D+ TGRS+G+GFVTFKD +A A +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 85 PSPV-IDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSY 138
+ +DGR N A GGG +R G Y GG SY
Sbjct: 69 MNGQDLDGRSITVNEAQSRGSGGGGGHRGGGGGGYRSGGG----GGYSGG-GGSY 118
>UNIPROTKB|D6R9P3 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964686 ProteinModelPortal:D6R9P3
SMR:D6R9P3 Ensembl:ENST00000515193 ArrayExpress:D6R9P3 Bgee:D6R9P3
Uniprot:D6R9P3
Length = 280
Score = 174 (66.3 bits), Expect = 3.5e-13, P = 3.5e-13
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 65 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASV 124
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 125 EKVLDQKEHRLDGR 138
Score = 122 (48.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF +FGEI EA+ + D + +G+ F+TFK+ E + +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGR 117
+ G + +A K Q+G GGR
Sbjct: 214 KKFHTVSGSKCEIKVAQ---PKEVYQQQQYGSGGR 245
>UNIPROTKB|D6RD18 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00966854 ProteinModelPortal:D6RD18
SMR:D6RD18 Ensembl:ENST00000514633 ArrayExpress:D6RD18 Bgee:D6RD18
Uniprot:D6RD18
Length = 283
Score = 174 (66.3 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 65 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASV 124
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 125 EKVLDQKEHRLDGR 138
Score = 122 (48.0 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF +FGEI EA+ + D + +G+ F+TFK+ E + +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGR 117
+ G + +A K Q+G GGR
Sbjct: 214 KKFHTVSGSKCEIKVAQ---PKEVYQQQQYGSGGR 245
>RGD|69255 [details] [associations]
symbol:Hnrnpab "heterogeneous nuclear ribonucleoprotein A/B"
species:10116 "Rattus norvegicus" [GO:0001837 "epithelial to
mesenchymal transition" evidence=ISO] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0030529 "ribonucleoprotein complex"
evidence=ISO] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0043565
"sequence-specific DNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0045892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003688 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 PIR:PC4375 PIR:PC4376 PIR:PC4377 UniGene:Rn.1427
UniGene:Rn.217734 EMBL:AF108653 IPI:IPI00208193
ProteinModelPortal:Q9Z0U8 SMR:Q9Z0U8 IntAct:Q9Z0U8 MINT:MINT-7138483
STRING:Q9Z0U8 PRIDE:Q9Z0U8 UCSC:RGD:69255 Genevestigator:Q9Z0U8
Uniprot:Q9Z0U8
Length = 298
Score = 175 (66.7 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 83 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSV 142
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 143 EKVLDQKEHRLDGR 156
Score = 122 (48.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF QFGEI EA+ + D + +G+ F+TFK+ + + +
Sbjct: 173 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 231
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGR 117
+ G + +A K Q+G GGR
Sbjct: 232 KKFHTVSGSKCEIKVAQ---PKEVYQQQQYGSGGR 263
>UNIPROTKB|Q3ZC44 [details] [associations]
symbol:HNRNPAB "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 OMA:FILFKDP EMBL:DAAA02020063
EMBL:DAAA02020062 EMBL:BC102923 IPI:IPI00843025
RefSeq:NP_001035612.1 UniGene:Bt.58979 SMR:Q3ZC44
Ensembl:ENSBTAT00000018114 GeneID:513410 KEGG:bta:513410
NextBio:20870841 Uniprot:Q3ZC44
Length = 285
Score = 174 (66.3 bits), Expect = 4.0e-13, P = 4.0e-13
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 65 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDATSV 124
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 125 EKVLDQKEHRLDGR 138
Score = 125 (49.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 33/95 (34%), Positives = 49/95 (51%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF +FGEI EA+ + D + + +G+ F+TFK+ E + +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKSNKRRGFVFITFKEEEPVKKVLE 213
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGR 117
I G + +A K Q+G GGR
Sbjct: 214 KKFHTISGSKCEIKVAQ---PKEVYQQQQYGSGGR 245
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 180 (68.4 bits), Expect = 4.7e-13, P = 4.7e-13
Identities = 30/68 (44%), Positives = 46/68 (67%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GG++W+T + ++ YF FGE++EAV++ D+ TGR++G+GFV F DP A
Sbjct: 7 KLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITE 66
Query: 85 PSPVIDGR 92
IDGR
Sbjct: 67 KHN-IDGR 73
Score = 131 (51.2 bits), Expect = 5.2e-06, P = 5.2e-06
Identities = 26/68 (38%), Positives = 37/68 (54%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL + YFEQFG + VV+ D NT R +G+GF+T+ EA +
Sbjct: 109 KIFVGGLPSSVTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLK 168
Query: 85 PSPVIDGR 92
++G+
Sbjct: 169 TFHELNGK 176
>ZFIN|ZDB-GENE-030131-185 [details] [associations]
symbol:hnrnpab "heterogeneous nuclear
ribonucleoprotein A/B" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-185
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU658205 IPI:IPI01023938 Ensembl:ENSDART00000148447
ArrayExpress:F8W4E3 Uniprot:F8W4E3
Length = 366
Score = 177 (67.4 bits), Expect = 4.9e-13, P = 4.9e-13
Identities = 36/106 (33%), Positives = 55/106 (51%)
Query: 11 GGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70
GG + K+FVGGL+W+T + ++ YF +FGE+ + + D NTGRS+G+GF+
Sbjct: 82 GGQIDASKGEEDAGKMFVGGLSWDTSKKDLKDYFSKFGEVTDCTIKMDPNTGRSRGFGFI 141
Query: 71 TFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG 116
FK+P + +DGR+ + A A K P GG
Sbjct: 142 LFKEPSGVDKVLAQKEHRLDGRQIDPKKAM--AMKKEPVKKIFVGG 185
Score = 162 (62.1 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 52/166 (31%), Positives = 73/166 (43%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ- 83
KIFVGGL ET + +R YF FGEI + D + + +G+ F+TFK+ EA + +
Sbjct: 180 KIFVGGLNPETTEERIREYFGAFGEIETIELPMDPKSNKRRGFVFITFKEEEAVKKILEK 239
Query: 84 ---NPSPVID--GRRANCNLASLGAHKTRPPTPQHGG-------GRFRPAPGLVAPPAYH 131
N S D G+ C + + K Q+GG GR R G Y+
Sbjct: 240 KYHNVSGTKDTSGKEGLCEI-KIAQPKEVYQQQQYGGRFGGGGRGRGRGGQGQNWNQGYN 298
Query: 132 GGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQF 177
++ Y +Q G Y GY GY Y+ YY YGG +
Sbjct: 299 NYWNQGYGNQGYGGYGGQQGYGGYGGYGNYD-YSGGYYGGYGGYDY 343
>UNIPROTKB|B4DHE8 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 HOVERGEN:HBG002295 UniGene:Hs.658922
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 EMBL:AK295060 IPI:IPI00910884
SMR:B4DHE8 STRING:B4DHE8 Ensembl:ENST00000416426 UCSC:uc010wnm.1
Uniprot:B4DHE8
Length = 324
Score = 175 (66.7 bits), Expect = 5.4e-13, P = 5.4e-13
Identities = 49/147 (33%), Positives = 75/147 (51%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF++ + +
Sbjct: 85 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 144
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG------RFRPAPGLVAPP---AYH 131
C+ I+ + C A P T G F G++ P A +
Sbjct: 145 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLGYPNFVATY 204
Query: 132 G----GFSSSYVHQPTGQYTFPYSAYG 154
G GF+ SY +Q G FP +AYG
Sbjct: 205 GRGYPGFAPSYGYQFPG---FPAAAYG 228
Score = 174 (66.3 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 31/74 (41%), Positives = 48/74 (64%)
Query: 26 IFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85
+F+GGL+W+T D++R YF +FGEI E +V+ D T RS+G+GFVTF DP + + P
Sbjct: 1 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQP 60
Query: 86 SPVIDGRRANCNLA 99
+D + + +A
Sbjct: 61 HHELDSKTIDPKVA 74
>UNIPROTKB|E9PTS0 [details] [associations]
symbol:Hnrnpab "Protein Hnrnpab" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012956 Pfam:PF08143 EMBL:AC105470 IPI:IPI00951862
Ensembl:ENSRNOT00000065584 ArrayExpress:E9PTS0 Uniprot:E9PTS0
Length = 331
Score = 175 (66.7 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 69 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSV 128
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 129 EKVLDQKEHRLDGR 142
Score = 140 (54.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 48/166 (28%), Positives = 72/166 (43%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF QFGEI EA+ + D + +G+ F+TFK+ + + +
Sbjct: 159 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 217
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG------RFRPAPGLVAPPAYHGGFSS- 136
+ G + +A K Q+G G R G +++ G+ +
Sbjct: 218 KKFHTVSGSKCEIKVAQ---PKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNY 274
Query: 137 ---SYVHQP---TGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQ 176
Y +Q G + YS YGY GY Y+ N YG Q
Sbjct: 275 WNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTN-YGKSQ 319
>UNIPROTKB|Q9QX81 [details] [associations]
symbol:Hnrnpab "RCG34663, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0001837 "epithelial to mesenchymal transition" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0043565
"sequence-specific DNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69255 GO:GO:0005634 GO:GO:0005737 GO:GO:0045893 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529 GO:GO:0001837
EMBL:CH473948 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 OMA:FILFKDP OrthoDB:EOG42BX9K EMBL:AC105470 PIR:PC4375
PIR:PC4376 PIR:PC4377 UniGene:Rn.1427 UniGene:Rn.217734
GeneID:100910156 KEGG:rno:100910156 EMBL:AJ238854 IPI:IPI00212724
RefSeq:XP_003750865.1 SMR:Q9QX81 STRING:Q9QX81
Ensembl:ENSRNOT00000004885 InParanoid:Q9QX81 Genevestigator:Q9QX81
Uniprot:Q9QX81
Length = 332
Score = 175 (66.7 bits), Expect = 5.9e-13, P = 5.9e-13
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 70 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSV 129
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 130 EKVLDQKEHRLDGR 143
Score = 140 (54.3 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 48/166 (28%), Positives = 72/166 (43%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF QFGEI EA+ + D + +G+ F+TFK+ + + +
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEI-EAIELPIDPKLNKRRGFVFITFKEEDPVKKVLE 218
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG------RFRPAPGLVAPPAYHGGFSS- 136
+ G + +A K Q+G G R G +++ G+ +
Sbjct: 219 KKFHTVSGSKCEIKVAQ---PKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNY 275
Query: 137 ---SYVHQP---TGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQ 176
Y +Q G + YS YGY GY Y+ N YG Q
Sbjct: 276 WNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTN-YGKSQ 320
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 179 (68.1 bits), Expect = 6.1e-13, P = 6.1e-13
Identities = 43/115 (37%), Positives = 64/115 (55%)
Query: 2 SQQRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNT 61
S++RP ++ + D N+T +FVG L+W + + FE++G I+ A VI D +
Sbjct: 245 SEERPAKITKPSQ--DSNETC--TVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQS 300
Query: 62 GRSKGYGFVTFKDPEAAMRA-CQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGG 115
GRSKGYG+V F+ PEAA A N + IDGR N +L++ +P Q G
Sbjct: 301 GRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAG 355
Score = 114 (45.2 bits), Expect = 0.00050, P = 0.00050
Identities = 33/109 (30%), Positives = 49/109 (44%)
Query: 8 QMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGY 67
Q GN GD +FVG L++ D + F G+I + TD +GR KG+
Sbjct: 351 QQRAGNF-GDQLSEPSDTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGF 409
Query: 68 GFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG 116
G+VTF D ++A + + I GR + + TP+ GGG
Sbjct: 410 GYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFS----------TPRTGGG 448
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 176 (67.0 bits), Expect = 6.4e-13, P = 6.4e-13
Identities = 31/71 (43%), Positives = 49/71 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGG++WET +T YF +FGE++++V++TD+ TG +G+GFVTF D A + +
Sbjct: 67 KLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVLEE 126
Query: 85 PSPVIDGRRAN 95
VID R+ +
Sbjct: 127 DH-VIDDRKVD 136
Score = 136 (52.9 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 46/154 (29%), Positives = 71/154 (46%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL + D ++ YF +G+I+E ++ D +TGRS+G+GFVTF+ ++ R
Sbjct: 158 KIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVTFQTEDSVDRLFS- 216
Query: 85 PSPVIDGRRANCNLASLGAHKTRPP-TPQHGGGRFRPAPGLV-APPAYHGGFSSSYVHQP 142
DG+ + + P T + R A G +Y G + Y
Sbjct: 217 -----DGKVHELGDKQVEIKRAEPKRTGRDNSFRSYGASGKYDQEDSYSGKANEDY---- 267
Query: 143 TGQYTFPYSAYG-YTGYSQDTMY-ALNYYNIYGG 174
Y+ Y YG Y Y+ ++M +Y YGG
Sbjct: 268 -SMYS-GYGGYGGYGAYAGNSMVNPAGFYG-YGG 298
>ZFIN|ZDB-GENE-040426-1268 [details] [associations]
symbol:msi2b "musashi homolog 2b (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1268 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:BX000438
EMBL:BX510988 EMBL:BX649247 EMBL:CR848815 EMBL:BC055251
IPI:IPI00481779 RefSeq:NP_957403.1 UniGene:Dr.82489 SMR:Q7SXT6
STRING:Q7SXT6 Ensembl:ENSDART00000100194 GeneID:394084
KEGG:dre:394084 CTD:394084 InParanoid:Q7SXT6 OMA:NYISASP
NextBio:20815041 Uniprot:Q7SXT6
Length = 408
Score = 177 (67.4 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 49/147 (33%), Positives = 76/147 (51%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF++ + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG------RFRPAPGLVAPP---AYH 131
C+ I+ + C A P T G F G+++ P A +
Sbjct: 167 VCEIHFHEINNKMVECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLSYPNIVATY 226
Query: 132 G----GFSSSYVHQPTGQYTFPYSAYG 154
G GF+ SY +Q G FP +AYG
Sbjct: 227 GRGYTGFAPSYSYQFPG---FPATAYG 250
Score = 174 (66.3 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 16 GDYNDTTFT--KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 73
G ND+ K+F+GGL+W+T D++R YF +FGEI E +V+ D T RS+G+GFVTF
Sbjct: 11 GSPNDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 74 DPEAAMRACQNPSPVIDGRRANCNLA 99
D + + P +D + + +A
Sbjct: 71 DAASVDKVLAQPHHELDSKTIDPKVA 96
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 173 (66.0 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 50/152 (32%), Positives = 73/152 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL + + + ++ YF QFG I +A VITDK+TG+ +G+GFV F D ++A +A
Sbjct: 98 KIFVGGLKDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVVM 157
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRF-RPAPGLVAPPAYHGGFSSSYVHQPT 143
I G + A T+ GGGR R G+ + GG Y +
Sbjct: 158 KFHSICGHKVEVKKAL-----TKQEMQSTGGGRGGRGGRGMGRGSGFGGGGRGGYYND-- 210
Query: 144 GQYTFPYSAYGY-TGYSQDTMYALNYYNIYGG 174
Y + + +G +GY Y Y + GG
Sbjct: 211 --YGYQNNGFGNNSGYDSQNGYGGGYSDQMGG 240
Score = 131 (51.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL +T + +R +FEQ+G++ + VV+ ++ RS+ +GFVT+ E A A
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAMSA 66
Query: 85 PSPVIDGRRANCNLA 99
++DG + A
Sbjct: 67 RPHIVDGNNVDLKRA 81
>UNIPROTKB|D6RBZ0 [details] [associations]
symbol:HNRNPAB "Heterogeneous nuclear ribonucleoprotein
A/B" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441
InterPro:IPR012956 Pfam:PF08143 EMBL:AC136632 HGNC:HGNC:5034
ChiTaRS:HNRNPAB IPI:IPI00964992 ProteinModelPortal:D6RBZ0
SMR:D6RBZ0 Ensembl:ENST00000506339 ArrayExpress:D6RBZ0 Bgee:D6RBZ0
Uniprot:D6RBZ0
Length = 327
Score = 174 (66.3 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 65 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASV 124
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 125 EKVLDQKEHRLDGR 138
Score = 140 (54.3 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 48/166 (28%), Positives = 72/166 (43%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF +FGEI EA+ + D + +G+ F+TFK+ E + +
Sbjct: 155 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG------RFRPAPGLVAPPAYHGGFSS- 136
+ G + +A K Q+G G R G +++ G+ +
Sbjct: 214 KKFHTVSGSKCEIKVAQ---PKEVYQQQQYGSGGRGNRNRGNRGSGGGQSQSWNQGYGNY 270
Query: 137 ---SYVHQP---TGQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQQ 176
Y +Q G + YS YGY GY Y+ N YG Q
Sbjct: 271 WNQGYGYQQGYGPGYGGYDYSPYGYYGYGPGYDYSQGSTN-YGKSQ 315
>ZFIN|ZDB-GENE-030826-25 [details] [associations]
symbol:msi2a "musashi homolog 2a (Drosophila)"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030826-25 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 OrthoDB:EOG48GW3J HSSP:Q61474
EMBL:CR931799 EMBL:CR931806 EMBL:BC045335 IPI:IPI00489753
RefSeq:NP_997961.1 UniGene:Dr.32677 SMR:Q7ZW10
Ensembl:ENSDART00000099473 Ensembl:ENSDART00000132096
GeneID:100002680 KEGG:dre:100002680 CTD:100002680 InParanoid:Q7ZW10
OMA:MEADASQ NextBio:20785547 Uniprot:Q7ZW10
Length = 388
Score = 176 (67.0 bits), Expect = 7.4e-13, P = 7.4e-13
Identities = 50/149 (33%), Positives = 77/149 (51%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF++ + +
Sbjct: 107 TRTKKIFVGGLSASTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDIVEK 166
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRP--------APGLVAPP---A 129
C+ I+ + C A + P G R P G+++ P A
Sbjct: 167 VCEIHFHEINNKMVECKKAQ--PKEVMFPPGTRGRARSLPYTMDAFMLGMGMLSYPNIVA 224
Query: 130 YHG----GFSSSYVHQPTGQYTFPYSAYG 154
+G GFS SY +Q G FP +AYG
Sbjct: 225 TYGRGYTGFSPSYSYQFPG---FPATAYG 250
Score = 171 (65.3 bits), Expect = 5.2e-12, P = 5.2e-12
Identities = 33/86 (38%), Positives = 52/86 (60%)
Query: 16 GDYNDTTFT--KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 73
G ND+ K+F+GGL+W+T D++R YF +FGEI E +V+ D T RS+G+GF+TF
Sbjct: 11 GSLNDSQHDPGKMFIGGLSWQTSPDSLRDYFCKFGEIRECMVMRDPTTKRSRGFGFITFA 70
Query: 74 DPEAAMRACQNPSPVIDGRRANCNLA 99
D + + P +D + + +A
Sbjct: 71 DVSSVDKVLAQPHHELDSKTIDPKVA 96
>MGI|MGI:104819 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein
A2/B1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IMP;IDA] [GO:0050658 "RNA transport" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104819 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0097157 GO:GO:0050658 GO:GO:0048025
eggNOG:COG0724 GO:GO:0043047 HOVERGEN:HBG002295 OrthoDB:EOG4HQDKF
CTD:3181 GeneTree:ENSGT00700000104376 KO:K13158 OMA:HYSARTS
ChiTaRS:HNRNPA2B1 EMBL:AF406651 EMBL:AF452567 EMBL:AF073990
EMBL:AF073993 EMBL:AK089012 EMBL:AK137214 EMBL:BC059107
EMBL:BC141253 IPI:IPI00405058 IPI:IPI00622847 IPI:IPI00828488
RefSeq:NP_058086.2 RefSeq:NP_872591.1 RefSeq:XP_001473875.2
UniGene:Mm.155896 ProteinModelPortal:O88569 SMR:O88569
IntAct:O88569 STRING:O88569 PhosphoSite:O88569
REPRODUCTION-2DPAGE:IPI00405058 REPRODUCTION-2DPAGE:O88569
SWISS-2DPAGE:O88569 PaxDb:O88569 PRIDE:O88569
Ensembl:ENSMUST00000069949 Ensembl:ENSMUST00000090002
Ensembl:ENSMUST00000114459 GeneID:100045191 GeneID:53379
KEGG:mmu:100045191 KEGG:mmu:53379 UCSC:uc009bxm.1 UCSC:uc009bxn.1
NextBio:458663 Bgee:O88569 CleanEx:MM_HNRNPA2B1
Genevestigator:O88569 GermOnline:ENSMUSG00000004980 Uniprot:O88569
Length = 353
Score = 157 (60.3 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 80 AA--RPHS-IDGR 89
Score = 149 (57.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 105 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 162
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + + G GG F
Sbjct: 163 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNF 207
Score = 62 (26.9 bits), Expect = 8.0e-13, Sum P(2) = 8.0e-13
Identities = 18/57 (31%), Positives = 22/57 (38%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y + YN
Sbjct: 252 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGSYNDFGNYN 307
Score = 45 (20.9 bits), Expect = 4.6e-11, Sum P(2) = 4.6e-11
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGSYNDFG--NYNQQPSNYGPM 316
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 317 KSGNFGGSR 325
>ZFIN|ZDB-GENE-040426-2717 [details] [associations]
symbol:hnrpdl "heterogeneous nuclear
ribonucleoprotein D-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-040426-2717
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103
CTD:9987 GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
OrthoDB:EOG49W2FZ EMBL:CR847788 EMBL:BC055525 IPI:IPI00500216
RefSeq:NP_998557.1 UniGene:Dr.75234 SMR:Q7SXN2 STRING:Q7SXN2
Ensembl:ENSDART00000020631 GeneID:406701 KEGG:dre:406701
InParanoid:Q7SXN2 NextBio:20818224 Uniprot:Q7SXN2
Length = 296
Score = 172 (65.6 bits), Expect = 8.1e-13, P = 8.1e-13
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+L+ + TD TGRS+G+GFV FKD E+ R +
Sbjct: 31 KMFIGGLSWDTSKKDLTDYLSRFGEVLDCTIKTDPLTGRSRGFGFVLFKDAESVDRVLEL 90
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGG 116
+DG+ + A K PP GG
Sbjct: 91 TEHKLDGKLIDPKRAKAIKGK-EPPKKVFVGG 121
Score = 149 (57.5 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 48/158 (30%), Positives = 72/158 (45%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ + + +R YF +GEI + TD T +G+ FVTF E + +N
Sbjct: 116 KVFVGGLSPDITEEQLREYFGVYGEIESIELPTDTKTNERRGFCFVTFALEEPVQKLLEN 175
Query: 85 PSPVIDGRRANCNLAS-LGAHKTRPPTPQ-HGGGR--FRPAPGLVAPPAYHGGFSSSYVH 140
I + +A ++ + + GGGR FR G ++ G+++ Y
Sbjct: 176 RYHQIGSGKCEIKVAQPKEVYRQQQNRDRGFGGGRGGFRGRGG--RGQGFNQGYNNYYGQ 233
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG-GQQF 177
G Y Y+ GY GYS NY N YG GQ +
Sbjct: 234 NYGGGYGNGYNQ-GYNGYSGYDYSGYNYQN-YGYGQGY 269
>UNIPROTKB|Q2HJ60 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0097157 "pre-mRNA
intronic binding" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0050658 "RNA transport"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0043047 "single-stranded
telomeric DNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0030529 GO:GO:0097157 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442
OrthoDB:EOG4HQDKF EMBL:BC113298 IPI:IPI00695201
RefSeq:NP_001039440.1 UniGene:Bt.48137 ProteinModelPortal:Q2HJ60
SMR:Q2HJ60 STRING:Q2HJ60 PRIDE:Q2HJ60 Ensembl:ENSBTAT00000007527
GeneID:507564 KEGG:bta:507564 CTD:3181 GeneTree:ENSGT00700000104376
KO:K13158 OMA:HYSARTS NextBio:20868121 Uniprot:Q2HJ60
Length = 341
Score = 157 (60.3 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 8 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 67
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 68 AA--RPHS-IDGR 77
Score = 149 (57.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 93 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 150
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + + G GG F
Sbjct: 151 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNF 195
Score = 61 (26.5 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y YN
Sbjct: 240 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 295
Score = 44 (20.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 247 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPM 304
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 305 KSGNFGGSR 313
>WB|WBGene00003423 [details] [associations]
symbol:msi-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 EMBL:Z35601 EMBL:AB036738
PIR:T24148 RefSeq:NP_497799.1 UniGene:Cel.19474
ProteinModelPortal:G5EFS2 SMR:G5EFS2 EnsemblMetazoa:R10E9.1.1
EnsemblMetazoa:R10E9.1.2 GeneID:175514 KEGG:cel:CELE_R10E9.1
CTD:175514 WormBase:R10E9.1 OMA:VADKVCE NextBio:888480
Uniprot:G5EFS2
Length = 320
Score = 173 (66.0 bits), Expect = 8.7e-13, P = 8.7e-13
Identities = 29/75 (38%), Positives = 50/75 (66%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + +R YF +FGE+ E +V+ D T R++G+GF+TF DP + + N
Sbjct: 46 KMFIGGLSWQTTAENLRDYFGRFGEVNECMVMRDPATKRARGFGFITFVDPSSVDKVLNN 105
Query: 85 PSPVIDGRRANCNLA 99
+DG++ + +A
Sbjct: 106 REHELDGKKIDPKVA 120
Score = 158 (60.7 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 43/146 (29%), Positives = 73/146 (50%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T K+F+GGL+ + + M++YFE +G++ +A+++ DK T R +G+GFVTF E A +
Sbjct: 131 TKTKKVFIGGLSATSTLEDMKQYFETYGKVEDAMLMFDKATQRHRGFGFVTFDSDEVADK 190
Query: 81 ACQNPSPVIDGRRANCNLAS-------LGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGG 133
C+ I+G+ C A + +K+R ++ G P L+A Y
Sbjct: 191 VCEIHFHEINGKMVECKKAQPKEVMLPVQLNKSRAAAARNLYGM--PPETLLAYAQYLPR 248
Query: 134 FSSSYVHQPTGQYTFPYSAYGYTGYS 159
F + ++ P F GY+G S
Sbjct: 249 FGGNLMY-PNFTNVFNNMPGGYSGLS 273
>TAIR|locus:2055951 [details] [associations]
symbol:AT2G22100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007232
HSSP:Q14103 ProtClustDB:CLSN2914947 IPI:IPI00529413 PIR:A84609
RefSeq:NP_565526.1 UniGene:At.39482 ProteinModelPortal:Q9SHZ5
SMR:Q9SHZ5 EnsemblPlants:AT2G22100.1 GeneID:816745
KEGG:ath:AT2G22100 TAIR:At2g22100 InParanoid:Q9SHZ5 OMA:VFESADR
PhylomeDB:Q9SHZ5 ArrayExpress:Q9SHZ5 Genevestigator:Q9SHZ5
Uniprot:Q9SHZ5
Length = 382
Score = 175 (66.7 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 33/77 (42%), Positives = 48/77 (62%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
D++ IFV GL W+T + ++ FE +GEI E V+ DK+TGR+KG+GFV FK + A
Sbjct: 159 DSSQRNIFVRGLGWDTTHENLKAAFEVYGEITECSVVMDKDTGRAKGFGFVLFKTRKGAR 218
Query: 80 RACQNPSPVIDGRRANC 96
A +NP + R +C
Sbjct: 219 AALKNPEKRMYNRTVSC 235
>UNIPROTKB|E9PSF1 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955 HGNC:HGNC:15818
IPI:IPI00974044 ProteinModelPortal:E9PSF1 SMR:E9PSF1
Ensembl:ENST00000342690 ArrayExpress:E9PSF1 Bgee:E9PSF1
Uniprot:E9PSF1
Length = 77
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 35/58 (60%), Positives = 41/58 (70%)
Query: 5 RPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTG 62
RPL G H G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG
Sbjct: 16 RPLAAPGAMH-GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTG 72
>UNIPROTKB|F1LNF1 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310403
GO:GO:0005730 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0071013 GO:GO:0050658 GO:GO:0043047
GeneTree:ENSGT00700000104376 OMA:HYSARTS IPI:IPI00867934
ProteinModelPortal:F1LNF1 Ensembl:ENSRNOT00000015152
ArrayExpress:F1LNF1 Uniprot:F1LNF1
Length = 352
Score = 157 (60.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 19 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 78
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 79 AA--RPHS-IDGR 88
Score = 149 (57.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 104 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 161
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + + G GG F
Sbjct: 162 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNF 206
Score = 61 (26.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y YN
Sbjct: 251 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 306
Score = 44 (20.5 bits), Expect = 5.8e-11, Sum P(2) = 5.8e-11
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 258 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPM 315
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 316 KSGNFGGSR 324
>UNIPROTKB|Q5RBU8 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9601 "Pongo abelii" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG002295 CTD:3181 KO:K13158 EMBL:CR858535
RefSeq:NP_001127331.1 UniGene:Pab.19213 HSSP:P22626
ProteinModelPortal:Q5RBU8 SMR:Q5RBU8 PRIDE:Q5RBU8 GeneID:100174392
KEGG:pon:100174392 InParanoid:Q5RBU8 Uniprot:Q5RBU8
Length = 353
Score = 157 (60.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 80 AA--RPHS-IDGR 89
Score = 150 (57.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 105 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 162
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + + G GG F
Sbjct: 163 HDPVDKIVLQKHHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNF 207
Score = 61 (26.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y YN
Sbjct: 252 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 307
Score = 44 (20.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPM 316
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 317 KSGNFGGSR 325
>UNIPROTKB|F1Q1K6 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:HYSARTS EMBL:AAEX03009384
Ensembl:ENSCAFT00000004622 Uniprot:F1Q1K6
Length = 353
Score = 157 (60.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 80 AA--RPHS-IDGR 89
Score = 149 (57.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 105 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 162
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + + G GG F
Sbjct: 163 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNF 207
Score = 61 (26.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y YN
Sbjct: 252 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 307
Score = 44 (20.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPM 316
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 317 KSGNFGGSR 325
>UNIPROTKB|P22626 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0097157 "pre-mRNA intronic
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006397 "mRNA processing" evidence=IDA]
[GO:0050658 "RNA transport" evidence=IDA] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GO:GO:0071013 GO:GO:0050658 eggNOG:COG0724 GO:GO:0043047
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
HPA:HPA001666 CTD:3181 KO:K13158 OMA:HYSARTS EMBL:M29064
EMBL:M29065 EMBL:U09123 EMBL:U09120 EMBL:U09121 EMBL:U09122
EMBL:D28877 EMBL:AK289429 IPI:IPI00396378 IPI:IPI00414696
PIR:A56845 RefSeq:NP_002128.1 RefSeq:NP_112533.1 UniGene:Hs.487774
PDB:1X4B PDBsum:1X4B ProteinModelPortal:P22626 SMR:P22626
IntAct:P22626 MINT:MINT-4998934 STRING:P22626 PhosphoSite:P22626
DMDM:133257 REPRODUCTION-2DPAGE:IPI00396378
REPRODUCTION-2DPAGE:IPI00414696 REPRODUCTION-2DPAGE:P22626
SWISS-2DPAGE:P22626 UCD-2DPAGE:P22626 PaxDb:P22626 PRIDE:P22626
Ensembl:ENST00000354667 Ensembl:ENST00000356674
Ensembl:ENST00000360787 GeneID:3181 KEGG:hsa:3181 UCSC:uc003sxr.4
UCSC:uc003sxs.4 GeneCards:GC07M026229 HGNC:HGNC:5033 HPA:CAB012403
MIM:600124 neXtProt:NX_P22626 PharmGKB:PA162391140 PhylomeDB:P22626
ChiTaRS:HNRNPA2B1 EvolutionaryTrace:P22626 GenomeRNAi:3181
NextBio:12622 PMAP-CutDB:P22626 Bgee:P22626 CleanEx:HS_HNRNPA2B1
Genevestigator:P22626 GermOnline:ENSG00000122566 Uniprot:P22626
Length = 353
Score = 157 (60.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 80 AA--RPHS-IDGR 89
Score = 149 (57.5 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 105 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 162
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + + G GG F
Sbjct: 163 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNF 207
Score = 61 (26.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y YN
Sbjct: 252 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 307
Score = 44 (20.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPM 316
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 317 KSGNFGGSR 325
>RGD|1310403 [details] [associations]
symbol:Hnrnpa2b1 "heterogeneous nuclear ribonucleoprotein A2/B1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA;ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0043047
"single-stranded telomeric DNA binding" evidence=IEA;ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0050658 "RNA transport" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
[GO:0097157 "pre-mRNA intronic binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310403 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0030529 GO:GO:0071013 GO:GO:0050658
eggNOG:COG0724 GO:GO:0043047 HOGENOM:HOG000234442 OrthoDB:EOG4HQDKF
CTD:3181 KO:K13158 EMBL:AB006815 EMBL:AB006816 EMBL:AB006817
EMBL:AB006818 IPI:IPI00212969 IPI:IPI00867934 IPI:IPI00923129
IPI:IPI00923135 RefSeq:NP_001098083.1 UniGene:Rn.231911
ProteinModelPortal:A7VJC2 SMR:A7VJC2 STRING:A7VJC2 PRIDE:A7VJC2
GeneID:362361 KEGG:rno:362361 UCSC:RGD:1310403 HOVERGEN:HBG108415
InParanoid:A7VJC2 NextBio:679650 ArrayExpress:A7VJC2
Genevestigator:A7VJC2 Uniprot:A7VJC2
Length = 353
Score = 157 (60.3 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 80 AA--RPHS-IDGR 89
Score = 148 (57.2 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 105 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 162
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + + G GG F
Sbjct: 163 HDPVDKIFLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNF 207
Score = 61 (26.5 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y YN
Sbjct: 252 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 307
Score = 44 (20.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 259 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPM 316
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 317 KSGNFGGSR 325
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 171 (65.3 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 47/137 (34%), Positives = 72/137 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRP-APGLVAPPAYHGGFSSS--Y 138
S +DGR+ + A G +GG RF + G Y+ S S Y
Sbjct: 67 MNGKS--VDGRQIRVDQAGGGDRG-------YGGNRFESRSGGYGGSRDYYSSRSQSGGY 117
Query: 139 VHQPTG-QYTFPYSAYG 154
+ +G Y Y +YG
Sbjct: 118 SDRSSGGSYRDSYDSYG 134
>UNIPROTKB|H0YA96 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000514671 Uniprot:H0YA96
Length = 210
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 2 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 61
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 62 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 109
Score = 116 (45.9 bits), Expect = 4.5e-05, P = 4.5e-05
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE 76
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E
Sbjct: 87 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 138
>UNIPROTKB|D6RAF8 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956 Pfam:PF08143
IPI:IPI00965952 ProteinModelPortal:D6RAF8 SMR:D6RAF8
Ensembl:ENST00000507010 ArrayExpress:D6RAF8 Bgee:D6RAF8
Uniprot:D6RAF8
Length = 221
Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 158 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
>FB|FBgn0263396 [details] [associations]
symbol:sqd "squid" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IC;IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005703 "polytene chromosome puff" evidence=IDA]
[GO:0008069 "dorsal/ventral axis specification, ovarian follicular
epithelium" evidence=IMP] [GO:0007297 "ovarian follicle cell
migration" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP;TAS]
[GO:0008298 "intracellular mRNA localization" evidence=NAS;TAS]
[GO:0017148 "negative regulation of translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0009953
"dorsal/ventral pattern formation" evidence=IMP;TAS] [GO:0006405
"RNA export from nucleus" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0035062 "omega speckle"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=NAS] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019094 "pole plasm mRNA localization"
evidence=IMP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0030720 "oocyte localization
involved in germarium-derived egg chamber formation" evidence=IMP]
[GO:0016325 "oocyte microtubule cytoskeleton organization"
evidence=IMP] [GO:0007293 "germarium-derived egg chamber formation"
evidence=IMP] [GO:0007314 "oocyte anterior/posterior axis
specification" evidence=IMP] [GO:0045451 "pole plasm oskar mRNA
localization" evidence=IEP] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0033119 "negative regulation of RNA splicing"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000785 GO:GO:0003730 GO:GO:0006406 GO:GO:0033119
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0030720
GO:GO:0007297 eggNOG:COG0724 GO:GO:0045451 GO:GO:0005703
GO:GO:0000381 GO:GO:0016325 GO:GO:0008069
GeneTree:ENSGT00700000104255 GO:GO:0035062 EMBL:X62637 EMBL:X62638
EMBL:S61875 EMBL:S62100 EMBL:AY118501 EMBL:BT001384 EMBL:BT003283
EMBL:BT023832 EMBL:S51693 PIR:A47369 PIR:B41732 PIR:B47369
PIR:C48110 RefSeq:NP_001247088.1 RefSeq:NP_652209.1
RefSeq:NP_731825.1 RefSeq:NP_731826.1 RefSeq:NP_996203.1
UniGene:Dm.7189 ProteinModelPortal:Q08473 SMR:Q08473 IntAct:Q08473
MINT:MINT-847475 STRING:Q08473 PaxDb:Q08473
EnsemblMetazoa:FBtr0082855 GeneID:41666 KEGG:dme:Dmel_CG16901
CTD:41666 FlyBase:FBgn0263396 InParanoid:Q08473 KO:K03102
OMA:GDIDSIN OrthoDB:EOG43BK52 PhylomeDB:Q08473 ChiTaRS:sqd
GenomeRNAi:41666 NextBio:824926 Bgee:Q08473 GermOnline:CG16901
Uniprot:Q08473
Length = 344
Score = 172 (65.6 bits), Expect = 1.4e-12, P = 1.4e-12
Identities = 50/153 (32%), Positives = 67/153 (43%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL E + ++ YF QFG I+E + DK + KG+ F+TF + +
Sbjct: 137 KIFVGGLTTEISDEEIKTYFGQFGNIVEVEMPFDKQKSQRKGFCFITFDSEQVVTDLLKT 196
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTG 144
P I G+ + A+ +P GG R P G+ +GG Y +Q G
Sbjct: 197 PKQKIAGKEVDVKRAT-----PKPENQMMGGMRGGPRGGMRGGRGGYGG-RGGYNNQWDG 250
Query: 145 Q-----YTFPYSAYGYTGYSQDTMYALNYYNIY 172
Q Y Y YG GY YA YYN Y
Sbjct: 251 QGSYGGYGGGYGGYGAGGYGD--YYAGGYYNGY 281
Score = 144 (55.7 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+WET +R +F ++GEI V TD TGRS+G+ F+ F + EA +
Sbjct: 57 KLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAIDKVSAA 116
Query: 85 PSPVIDGRRAN 95
+I+ ++ +
Sbjct: 117 DEHIINSKKVD 127
Score = 48 (22.0 bits), Expect = 1.8e-09, Sum P(2) = 1.8e-09
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 131 HGGFSSS-YVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGG 174
+GG+ + Y G Y Y YGY GY + N Y GG
Sbjct: 261 YGGYGAGGYGDYYAGGYYNGYD-YGYDGYGYGGGFEGNGYGGGGG 304
>UNIPROTKB|F1RX74 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0097157 "pre-mRNA intronic binding" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0050658 "RNA transport" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0043047 "single-stranded telomeric DNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005730 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0050658
GO:GO:0043047 GeneTree:ENSGT00700000104376 OMA:HYSARTS
EMBL:CU469303 Ensembl:ENSSSCT00000017244 Uniprot:F1RX74
Length = 353
Score = 157 (60.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 20 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 79
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 80 AA--RPHS-IDGR 89
Score = 144 (55.7 bits), Expect = 7.3e-08, P = 7.3e-08
Identities = 47/161 (29%), Positives = 74/161 (45%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G++ +ITD+ +G+ +G+GF TF D
Sbjct: 105 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKVDTIEIITDRQSGKKRGFGFFTFDD 162
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRFRPAPGLVAPPAYHGG 133
+ + I+G A A + + G GG F HGG
Sbjct: 163 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDS-------HGG 215
Query: 134 FSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYGG 174
++ P G F +YGY G + + + YN YGG
Sbjct: 216 -GGNFGPGP-GS-NFRGGSYGY-GSGRG--FG-DGYNGYGG 249
Score = 59 (25.8 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 18/57 (31%), Positives = 20/57 (35%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F PG +GG Y +Q G Y Y YG Y YN
Sbjct: 252 GGGNFGGIPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 307
Score = 44 (20.5 bits), Expect = 5.9e-11, Sum P(2) = 5.9e-11
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 111 PQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALNY 168
P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 260 PGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPMK 317
Query: 169 YNIYGGQQ 176
+GG +
Sbjct: 318 SGSFGGSR 325
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 175 (66.7 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE 76
K+F+GGL WET +++ YF QFGE+ E V+ D TGRS+G+GF+TFKDP+
Sbjct: 111 KMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDPK 162
Score = 159 (61.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 31/67 (46%), Positives = 47/67 (70%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
P D + T +KIFVGG++ E +++F QFG +++A ++ DK+TGR +G+GFVTF D
Sbjct: 186 PRDEQEKT-SKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTF-D 243
Query: 75 PEAAMRA 81
EAA+ A
Sbjct: 244 SEAAVEA 250
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 52/156 (33%), Positives = 80/156 (51%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSSGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
+ G F + GY G S+D + + YG
Sbjct: 118 GGDRGYGGSRFESRSGGYGG-SRDYYSSRSQGGSYG 152
>UNIPROTKB|Q9TTV2 [details] [associations]
symbol:HNRNPA2B1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:9490 "Saguinus oedipus" [GO:0030529
"ribonucleoprotein complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0030529 HOVERGEN:HBG002295 HSSP:P22626 EMBL:AF192348
ProteinModelPortal:Q9TTV2 SMR:Q9TTV2 Uniprot:Q9TTV2
Length = 341
Score = 154 (59.3 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 32/73 (43%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL+++T +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 8 FRKLFIGGLSFQTTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 67
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 68 AA--RPHS-IDGR 77
Score = 143 (55.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 33/105 (31%), Positives = 53/105 (50%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YF ++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 93 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFAEYGKIDTIEIITDRQSGKKRGFGFVTFDD 150
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + + G GG F
Sbjct: 151 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNF 195
Score = 61 (26.5 bits), Expect = 2.6e-12, Sum P(2) = 2.6e-12
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y YN
Sbjct: 240 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 295
Score = 44 (20.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 247 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPM 304
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 305 KSGNFGGSR 313
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 52/161 (32%), Positives = 81/161 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+++T + F ++G+I E VV+ D+ T RS+G+GFVTF++ E A A
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 85 PS-PVIDGRRANCNLASLGAHKTRPPTP--QHGGGR--FRPAPGLVAPPAYHGGFSSSYV 139
+ +DGR+ + A ++ R GGGR FR G +GG SS +
Sbjct: 67 MNGKTVDGRQIRVDQAGKSSNDRRGGYRGGSSGGGRGFFRGGRGRGG--GGYGG-SSRFD 123
Query: 140 HQPTGQYT--FP--YSAYGYTGYSQDTMYALNY---YNIYG 173
++ G Y P YS+ + Y + +Y Y+ YG
Sbjct: 124 NRSGGGYGGWIPDYYSSGRESSYGDRSAGGRSYRDSYDSYG 164
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 53/156 (33%), Positives = 74/156 (47%)
Query: 3 QQRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTG 62
Q R LQ G+ + T +KIFVGGL+ T + ++ F FG+I++AVV+ D+ +G
Sbjct: 16 QPRALQASNAMLQGNLSLTP-SKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESG 74
Query: 63 RSKGYGFVTFKDPEAA---MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFR 119
S+G+GFVT+ E A M+A QN +DGR +G H P GGG
Sbjct: 75 LSRGFGFVTYDSIEVANNAMQAMQNKE--LDGR-------IIGVH----PADSGGGGG-- 119
Query: 120 PAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGY 155
G Y GG Y G+ F YG+
Sbjct: 120 -GGGFARRGGYGGG-RGGYARGGFGRGGFGGGGYGF 153
>UNIPROTKB|F1NKP3 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830
GeneTree:ENSGT00390000002308 OMA:VGYGYPA EMBL:AADN02018985
IPI:IPI00590634 Ensembl:ENSGALT00000012361 ArrayExpress:F1NKP3
Uniprot:F1NKP3
Length = 172
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 48/122 (39%), Positives = 59/122 (48%)
Query: 58 DKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTP-QHGGG 116
D+ G+S+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA T G
Sbjct: 2 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSIQTGFTIGVQ 61
Query: 117 RFRPA----P-GLVAPPAYHGGF--SSSYVHQPTGQYTFPYSAY--GYTGYSQDTMYALN 167
+ PA P GL Y S + P PY Y YSQ T A +
Sbjct: 62 QLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQAYSQYTTAAYD 121
Query: 168 YY 169
Y
Sbjct: 122 QY 123
>UNIPROTKB|F1NT70 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IEA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IEA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043484 "regulation of
RNA splicing" evidence=IEA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] InterPro:IPR012677 GO:GO:0008285
GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0003730 GO:GO:0043484 GO:GO:0006978 GO:GO:0070935
GO:GO:0010830 GeneTree:ENSGT00390000002308 OMA:VGYGYPA
EMBL:AADN02018985 IPI:IPI01017346 Ensembl:ENSGALT00000038979
ArrayExpress:F1NT70 Uniprot:F1NT70
Length = 171
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 48/122 (39%), Positives = 59/122 (48%)
Query: 58 DKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTP-QHGGG 116
D+ G+S+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA T G
Sbjct: 1 DRQRGKSRGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAKPRSIQTGFTIGVQ 60
Query: 117 RFRPA----P-GLVAPPAYHGGF--SSSYVHQPTGQYTFPYSAY--GYTGYSQDTMYALN 167
+ PA P GL Y S + P PY Y YSQ T A +
Sbjct: 61 QLHPAFIQRPFGLTPHYVYPQAIIQPSVVIPTPVQSIASPYIDYTAASQAYSQYTTAAYD 120
Query: 168 YY 169
Y
Sbjct: 121 QY 122
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQD 161
+ G F + GY G S+D
Sbjct: 118 GGDRGYGGSRFESRSGGYGG-SRD 140
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQD 161
+ G F + GY G S+D
Sbjct: 118 GGDRGYGGSRFESRSGGYGG-SRD 140
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQD 161
+ G F + GY G S+D
Sbjct: 118 GGDRGYGGSRFESRSGGYGG-SRD 140
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 35/109 (32%), Positives = 58/109 (53%)
Query: 26 IFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85
+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 86 SPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 61 EHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 107
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQD 161
+ G F + GY G S+D
Sbjct: 118 GGDRGYGGNRFESRSGGYGG-SRD 140
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQD 161
+ G F + GY G S+D
Sbjct: 118 GGDRGYGGNRFESRSGGYGG-SRD 140
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQD 161
+ G F + GY G S+D
Sbjct: 118 GGDRGYGGNRFESRSGGYGG-SRD 140
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQD 161
+ G F + GY G S+D
Sbjct: 118 GGDRGYGGNRFESRSGGYGG-SRD 140
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQD 161
+ G F + GY G S+D
Sbjct: 118 GGDRGYGGNRFESRSGGYGG-SRD 140
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 39/105 (37%), Positives = 62/105 (59%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPG 123
S +DGR+ + A + +++R GGR FR G
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG 109
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 50/154 (32%), Positives = 77/154 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T + + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGRFRPAPGLVAPPAYHG-GFSSSYV 139
S +DGR+ + A + +++R GGR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGR-----GFFRGGRSRGRGFSRGGG 119
Query: 140 HQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
+ G F + GY G S+D + + YG
Sbjct: 120 DRGYGGGRFESRSGGYGG-SRDYYASRSQGGSYG 152
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGL W T +++ F ++G+++++ +ITD+ TGRS+G+GFVTF EA +A +
Sbjct: 7 RCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEA 66
Query: 85 PSPV-IDGRRANCNLA 99
+ +DGR N A
Sbjct: 67 MNGQDLDGRNITVNEA 82
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 36/99 (36%), Positives = 58/99 (58%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KI+VG L+++ D ++ +F Q+GEI EA +I D+ TGRSKG+ F+T+ +AA A
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 85 PSPV-IDGRRANCNLA--SLGAHKTRPPTPQHGG--GRF 118
+ + + GR+ N+A + G + + GG GRF
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRRRDGGSGGRGGRGGRF 117
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 36/99 (36%), Positives = 58/99 (58%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KI+VG L+++ D ++ +F Q+GEI EA +I D+ TGRSKG+ F+T+ +AA A
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 85 PSPV-IDGRRANCNLA--SLGAHKTRPPTPQHGG--GRF 118
+ + + GR+ N+A + G + + GG GRF
Sbjct: 79 ANGIDLQGRKIRVNIARENTGDRRRDGGSGGRGGRGGRF 117
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 50/154 (32%), Positives = 77/154 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T + + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGRFRPAPGLVAPPAYHG-GFSSSYV 139
S +DGR+ + A + +++R GGR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGR-----GFFRGGRSRGRGFSRGGG 119
Query: 140 HQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
+ G F + GY G S+D + + YG
Sbjct: 120 DRGYGGGRFESRSGGYGG-SRDYYASRSQGGSYG 152
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
Identities = 50/154 (32%), Positives = 77/154 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T + + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGRFRPAPGLVAPPAYHG-GFSSSYV 139
S +DGR+ + A + +++R GGR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGR-----GFFRGGRSRGRGFSRGGG 119
Query: 140 HQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
+ G F + GY G S+D + + YG
Sbjct: 120 DRGYGGGRFESRSGGYGG-SRDYYASRSQGGSYG 152
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 42/126 (33%), Positives = 67/126 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL ++T +++ + F ++G+I E VV+ D+ T RS+G+GFVTF++P+ A A
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 85 PS-PVIDGRRANCNLA--SLGAHKTRPPTPQHGG-GRFRPAPGLVAPPAYHGGFSSSYVH 140
+ +DGR+ + A S G + GG G FR G G+ SS
Sbjct: 66 MNGKAVDGRQIRVDQAGKSSGDRRGGYRGGSSGGRGFFRGGRGRGGGDR---GYGSSRFD 122
Query: 141 QPTGQY 146
+G Y
Sbjct: 123 NRSGGY 128
>UNIPROTKB|H0Y8G5 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC124016 HGNC:HGNC:5036
ChiTaRS:HNRNPD Ensembl:ENST00000509263 Bgee:H0Y8G5 Uniprot:H0Y8G5
Length = 261
Score = 168 (64.2 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 31 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 90
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 91 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 138
Score = 151 (58.2 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 47/150 (31%), Positives = 72/150 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 116 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 175
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 176 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 232
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYY 169
Q G Y + YG Y GY T Y NYY
Sbjct: 233 QGYGNYGYNSQGYGGYGGYDY-TGYN-NYY 260
>UNIPROTKB|E2QXH4 [details] [associations]
symbol:HNRNPA2B1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 EMBL:AAEX03009384
ProteinModelPortal:E2QXH4 Ensembl:ENSCAFT00000004613 Uniprot:E2QXH4
Length = 301
Score = 149 (57.5 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 34/105 (32%), Positives = 54/105 (51%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 53 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 110
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRF 118
+ + I+G A A + + G GG F
Sbjct: 111 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNF 155
Score = 61 (26.5 bits), Expect = 8.0e-12, Sum P(2) = 8.0e-12
Identities = 18/57 (31%), Positives = 21/57 (36%)
Query: 114 GGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
GGG F +PG +GG Y +Q G Y Y YG Y YN
Sbjct: 200 GGGNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGSGNYNDFGNYN 255
Score = 44 (20.5 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
Identities = 18/69 (26%), Positives = 29/69 (42%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY-TFPYSAYGYTGYSQD-TMYALN 167
+P +GGGR G GG+ Y + G Y + Y+ +G Y+Q + Y
Sbjct: 207 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGNYNDFG--NYNQQPSNYGPM 264
Query: 168 YYNIYGGQQ 176
+GG +
Sbjct: 265 KSGNFGGSR 273
>UNIPROTKB|B4DTC3 [details] [associations]
symbol:HNRNPD "cDNA FLJ54150, highly similar to
Heterogeneous nuclear ribonucleoprotein D0" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 HOGENOM:HOG000234441 HOVERGEN:HBG002295 EMBL:AC124016
UniGene:Hs.480073 HGNC:HGNC:5036 ChiTaRS:HNRNPD InterPro:IPR012956
Pfam:PF08143 EMBL:AK300149 IPI:IPI01014602 SMR:B4DTC3 STRING:B4DTC3
Ensembl:ENST00000543098 Uniprot:B4DTC3
Length = 303
Score = 169 (64.5 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 37/116 (31%), Positives = 61/116 (52%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+
Sbjct: 40 NEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 99
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+ ++G+ + A A KT+ P + G P Y GGF
Sbjct: 100 DKVMDQKEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 153
Score = 156 (60.0 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 131 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 190
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 191 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 247
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYYNI--YGGQQ 176
Q G Y + YG Y GY T Y NYY Y QQ
Sbjct: 248 QGYGNYGYNSQGYGGYGGYDY-TGYN-NYYGYGDYSNQQ 284
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 36/97 (37%), Positives = 59/97 (60%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR 117
S +DGR+ + A + +++R GGR
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGR 101
>UNIPROTKB|I3LH22 [details] [associations]
symbol:LOC100514264 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:CU915617
Ensembl:ENSSSCT00000023009 OMA:QALEDHI Uniprot:I3LH22
Length = 161
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 51/154 (33%), Positives = 74/154 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL + + + + + F I E V++ D+ T RS+G+GF+TF +PE A MRA
Sbjct: 7 KLFVGGLNFNSDKQALEDHISSFRPISEVVIVKDRETQRSRGFGFITFTNPEHASNVMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQ 141
S +DGR+ + + A A TR G R R G G + Y +
Sbjct: 67 MNGES--LDGRQIHVDHAGKSAQGTRRGA---FGARGR---GYSRGGGEQGSGNGRYDSR 118
Query: 142 PTGQYTFPYSAYGYTGYSQDT-MYALNYYNIYGG 174
P G Y + YGY G S+D + Y+ Y G
Sbjct: 119 PGG-YVY---GYGY-GKSRDYGSRSQGSYDSYSG 147
>ZFIN|ZDB-GENE-030131-2249 [details] [associations]
symbol:hnrnpa0a "heterogeneous nuclear
ribonucleoprotein A0a" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-2249
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000234442 OrthoDB:EOG4W6NX4
EMBL:BC066672 IPI:IPI00995382 RefSeq:NP_997810.1 UniGene:Dr.75559
ProteinModelPortal:Q6NYB0 SMR:Q6NYB0 STRING:Q6NYB0 PRIDE:Q6NYB0
GeneID:323529 KEGG:dre:323529 CTD:323529 InParanoid:Q6NYB0
NextBio:20808302 ArrayExpress:Q6NYB0 Bgee:Q6NYB0 Uniprot:Q6NYB0
Length = 305
Score = 169 (64.5 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 51/152 (33%), Positives = 73/152 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIF+GGL + + D +R F QFG + +A VITDK TG+ +G+GFV F+D ++A +A
Sbjct: 102 KIFIGGLKDDIEEDHLRDCFSQFGAVEKAEVITDKETGKKRGFGFVYFEDNDSADKAVVL 161
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGG-GRFRPAPGLVAPPAYHGGFSSSYVHQPT 143
+I+G + A L + + + GG G G+ P +GG Y +
Sbjct: 162 KFHMINGHKVEVKKA-LTKQEMQAAGSRGGGRGGRGGGRGMGRPQNGYGGRGGGYGNYGG 220
Query: 144 GQYTFPYSAYGYTGYSQDTMYALNYYNIYGGQ 175
G Y YG GY Y Y YG Q
Sbjct: 221 GGYG-GNDGYG-GGYGGG--YGGGYGGGYGDQ 248
Score = 140 (54.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL +T D +R +FEQ+G++ + VV+ ++ RS+ +GFVT+ P+ A A
Sbjct: 11 KLFVGGLNVQTTDDGLRNHFEQYGKLTDCVVVQNQQLKRSRCFGFVTYSSPDEADSAMSA 70
Query: 85 PSPVIDGRRANCNLA 99
++DG A
Sbjct: 71 RPHILDGNNVELKRA 85
>UNIPROTKB|E1BEG2 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:DAAA02004160
IPI:IPI00690667 Ensembl:ENSBTAT00000028757 Uniprot:E1BEG2
Length = 380
Score = 155 (59.6 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF---KDPEAAMRA 81
K+F+GGL++ET D++R +FE++G + + VV+ D T RS+G+GFVT+ ++ +AAM
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-- 93
Query: 82 CQNPSPVIDGR 92
C P V DGR
Sbjct: 94 CARPHKV-DGR 103
Score = 139 (54.0 bits), Expect = 2.0e-09, Sum P(2) = 2.0e-09
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T KIFVGG+ +T+ +R YFE++G+I V+ D+ +G+ +G+ FVTF D
Sbjct: 119 PGAH--LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
Query: 75 PEAAMRACQNPSPVIDGRRANCNLA-SLGAHKTRPPTPQHGGG 116
+ + I+G NC + +L + + Q G G
Sbjct: 177 HDTVDKIVVQKYHTINGH--NCEVKKALSKQEMQSAGSQRGRG 217
Score = 56 (24.8 bits), Expect = 9.4e-12, Sum P(2) = 9.4e-12
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 115 GGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYAL-NY----- 168
GG + PG + Y GG Y +Q G + GY GY++ + NY
Sbjct: 274 GGNYGGGPGYSSRGGYGGGGPGGYGNQGGG---YGGGGGGYDGYNEGGNFGGGNYGGGGN 330
Query: 169 YNIYG---GQQ 176
YN +G GQQ
Sbjct: 331 YNDFGNYSGQQ 341
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 48/139 (34%), Positives = 68/139 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+F+GGL +ET D + + F ++G I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 82 CQNPSPVIDGRRANCNLA--SLGAHKTRPPTPQHGG-GRFRPAPGLVAPPAYHGGFSSSY 138
S +DGR+ + A S G + GG G FR G G+ SS
Sbjct: 66 MNGKS--VDGRQIRVDQAGKSSGERRGGYRGGSSGGRGFFRGGRGRGGGDR---GYGSSR 120
Query: 139 VHQPTGQYTFPYSAYGYTG 157
+G Y + Y G
Sbjct: 121 FDNRSGGYGGSSGSRDYYG 139
>UNIPROTKB|Q9XSY6 [details] [associations]
symbol:Q9XSY6 "HnRNP A/B related protein" species:9685
"Felis catus" [GO:0001837 "epithelial to mesenchymal transition"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0043565 "sequence-specific DNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001837 HOVERGEN:HBG002295 HSSP:Q14103 InterPro:IPR012956
Pfam:PF08143 EMBL:AF153444 ProteinModelPortal:Q9XSY6 Uniprot:Q9XSY6
Length = 279
Score = 168 (64.2 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 29/74 (39%), Positives = 46/74 (62%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + NTGRSKG+GF+ FKD +
Sbjct: 59 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMVPNTGRSKGFGFILFKDAASV 118
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 119 EKVLDQKEHRLDGR 132
Score = 129 (50.5 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 34/95 (35%), Positives = 49/95 (51%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVIT-DKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL E + +R YF +FGEI EA+ + D T + +G+ F+TFK+ E + +
Sbjct: 149 KIFVGGLNPEATEEKIREYFGEFGEI-EAIELPMDPKTNKRRGFVFITFKEEEPVKKVLE 207
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGR 117
I G + +A K Q+G GGR
Sbjct: 208 KKFHTISGSKCEIKVAQ---PKEVYQQQQYGSGGR 239
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 52/153 (33%), Positives = 78/153 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+ VGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
+ G F + GY G S+D YYN
Sbjct: 118 GGDRGYGGSRFDSRSGGYNG-SRD------YYN 143
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 52/153 (33%), Positives = 78/153 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+ VGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
+ G F + GY G S+D YYN
Sbjct: 118 GGDRGYGGSRFDSRSGGYNG-SRD------YYN 143
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 52/153 (33%), Positives = 78/153 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+ VGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSENRSRGYRGGSTGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYN 170
+ G F + GY G S+D YYN
Sbjct: 118 GGDRGYGGSRFDSRSGGYNG-SRD------YYN 143
>FB|FBgn0011666 [details] [associations]
symbol:msi "musashi" species:7227 "Drosophila melanogaster"
[GO:0005634 "nucleus" evidence=IDA] [GO:0022416 "chaeta
development" evidence=IMP] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS;NAS;TAS] [GO:0006397 "mRNA
processing" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=IMP;TAS] [GO:0006417 "regulation of
translation" evidence=TAS] [GO:0045182 "translation regulator
activity" evidence=TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001709 "cell fate determination" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0042078 "germ-line stem cell division" evidence=IMP]
[GO:0071456 "cellular response to hypoxia" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071456 GO:GO:0022416
GO:GO:0001709 GO:GO:0019827 GO:GO:0000900 GO:GO:0042078 KO:K14411
GeneTree:ENSGT00700000104255 HSSP:Q61474 ChiTaRS:msi
FlyBase:FBgn0011666 EMBL:BT133366 RefSeq:NP_001247303.1
RefSeq:NP_733108.2 UniGene:Dm.1334 SMR:Q8IMS8 MINT:MINT-296706
STRING:Q8IMS8 EnsemblMetazoa:FBtr0084881 EnsemblMetazoa:FBtr0305218
EnsemblMetazoa:FBtr0333664 GeneID:43087 KEGG:dme:Dmel_CG5099
UCSC:CG5099-RB CTD:43087 InParanoid:Q8IMS8 OMA:PIKAFAC
GenomeRNAi:43087 NextBio:832139 Uniprot:Q8IMS8
Length = 634
Score = 171 (65.3 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 32/93 (34%), Positives = 55/93 (59%)
Query: 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 75
G +D K+FVGGL+W+T D ++ YF FG + + +++ D T RS+G+GF+TF++P
Sbjct: 195 GSGSDPAPGKLFVGGLSWQTSSDKLKEYFNMFGTVTDVLIMKDPVTQRSRGFGFITFQEP 254
Query: 76 EAAMRACQNPSPVIDGRRANCNLASLGAHKTRP 108
+ + P +DG++ + A+ K RP
Sbjct: 255 CTVEKVLKVPIHTLDGKKIDPKHAT---PKNRP 284
Score = 164 (62.8 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 13 NHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF 72
N P N T KIFVGG++ +T + ++ YF QFG + E V++ D+ T R +G+GFVTF
Sbjct: 282 NRPRQANKTK--KIFVGGVSQDTSAEEVKAYFSQFGPVEETVMLMDQQTKRHRGFGFVTF 339
Query: 73 KDPEAAMRACQNPSPVIDGRRANCNLA 99
++ + R C+ I ++ C A
Sbjct: 340 ENEDVVDRVCEIHFHTIKNKKVECKKA 366
>UNIPROTKB|A5D9H5 [details] [associations]
symbol:HNRPD "Heterogeneous nuclear ribonucleoprotein D"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 InterPro:IPR012956
Pfam:PF08143 EMBL:DAAA02018245 EMBL:BT030594 IPI:IPI00905408
RefSeq:NP_001091533.1 UniGene:Bt.52882 SMR:A5D9H5 STRING:A5D9H5
Ensembl:ENSBTAT00000056365 GeneID:527471 KEGG:bta:527471
NextBio:20874604 Uniprot:A5D9H5
Length = 306
Score = 168 (64.2 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 158 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE 76
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 234
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 69
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 70 ARPHKVDGR 78
Score = 128 (50.1 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 29/97 (29%), Positives = 53/97 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFG--EILEAVVITDKNT 61
+R + + PG Y + KIFVG + +T+ +R YF Q+G E++E ++TD+ +
Sbjct: 83 KRAVSIEDSQRPGAYLNM---KIFVGAIKEDTEEHHLRDYFGQYGKTEVIE--IVTDRGS 137
Query: 62 GRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
G+ +G+ FVTF D ++ + ++G NC +
Sbjct: 138 GKKRGFAFVTFDDRDSVDKIVIQKYHTVNGH--NCEV 172
>UNIPROTKB|E2R228 [details] [associations]
symbol:E2R228 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AAEX03026350
Ensembl:ENSCAFT00000025375 OMA:SDVEYRC Uniprot:E2R228
Length = 149
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 50/143 (34%), Positives = 70/143 (48%)
Query: 26 IFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRAC 82
+F+GGL + T + +F FG I E VV+ D+ T RS+G+ F+TF +PE A MR
Sbjct: 8 LFLGGLNFNTNEQALEDHFSSFGPISEVVVVKDRETQRSRGFCFITFTNPEHASDAMRPM 67
Query: 83 QNPSPVIDGRRANCNLASLGAHKTRPPTPQ-HGGGRFRPAPGLVAPPAY-HGGFSSSYVH 140
S +DGR+ + A A TR + HG GR +Y GG Y
Sbjct: 68 NGKS--LDGRQIRVDHAGKLARGTRGCAFRAHGRGR-----------SYSRGGGDQGY-- 112
Query: 141 QPTGQYTFPYSAYGY-TGYSQDT 162
+G+Y YGY +G SQD+
Sbjct: 113 -GSGRYDSQPGGYGYGSGRSQDS 134
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
>UNIPROTKB|D6RBQ9 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOGENOM:HOG000234441 EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 IPI:IPI00963980
ProteinModelPortal:D6RBQ9 SMR:D6RBQ9 Ensembl:ENST00000503822
ArrayExpress:D6RBQ9 Bgee:D6RBQ9 Uniprot:D6RBQ9
Length = 155
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+
Sbjct: 73 NEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESV 132
Query: 79 MRACQNPSPVIDGR 92
+ ++G+
Sbjct: 133 DKVMDQKEHKLNGK 146
>UNIPROTKB|F5H6R6 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048255
EMBL:AC124016 HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI01012829
ProteinModelPortal:F5H6R6 SMR:F5H6R6 Ensembl:ENST00000541060
ArrayExpress:F5H6R6 Bgee:F5H6R6 Uniprot:F5H6R6
Length = 201
Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 29 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 88
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 89 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 145
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYYNI--YGGQQ 176
Q G Y + YG Y GY T Y NYY Y QQ
Sbjct: 146 QGYGNYGYNSQGYGGYGGYDY-TGYN-NYYGYGDYSNQQ 182
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 157 (60.3 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 52/173 (30%), Positives = 75/173 (43%)
Query: 11 GGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70
GGN D KIFVGG+ D ++ +F ++G ++E VI D T RS+G+GFV
Sbjct: 99 GGNQSKDIKTK---KIFVGGIPSTVTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFV 155
Query: 71 TFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAY 130
F D E + + +ID + K+ +P G R + +Y
Sbjct: 156 IF-DSEEVVDELLSKGNMIDMADTQVEIKKAEPKKSLNRSPPSYGSHPRGRSSNDSYASY 214
Query: 131 ---HGGFSSSYVHQP--TGQYTFPYSAY--GYTGYSQDTMYAL--NYYNIYGG 174
+GGF Y H P + P S Y GY GY + ++ YN YGG
Sbjct: 215 GGPYGGFDGGYGHPPGPIRSHGGPASRYAGGY-GYGRGSVGPEFGGGYNNYGG 266
Score = 148 (57.2 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 25/69 (36%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIF+GGL +T ++F ++GEI ++V++ D++TG+ +G+GF+TF DP + ++
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADPSVVDKVIED 79
Query: 85 PSPVIDGRR 93
+ VI+G++
Sbjct: 80 -THVINGKQ 87
Score = 61 (26.5 bits), Expect = 2.6e-11, Sum P(2) = 2.6e-11
Identities = 21/72 (29%), Positives = 25/72 (34%)
Query: 87 PVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY 146
P G N SLG ++ PP RF P Y G +Y+ P G
Sbjct: 255 PEFGGGYNNYGGGSLGGYRNEPPLGY--SSRFGPYGSGFGGEGYGRGGEGAYLGYPRGGG 312
Query: 147 TFPYSAYGYTGY 158
Y YG GY
Sbjct: 313 E-GYGGYGGPGY 323
Score = 47 (21.6 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 28/88 (31%), Positives = 35/88 (39%)
Query: 108 PPTP--QHGGGRFRPAPGL------VAPPA------YHGGFSSSYVHQPTGQYT--F-PY 150
PP P HGG R A G V P Y GG Y ++P Y+ F PY
Sbjct: 228 PPGPIRSHGGPASRYAGGYGYGRGSVGPEFGGGYNNYGGGSLGGYRNEPPLGYSSRFGPY 287
Query: 151 -SAYGYTGYSQDTMYALNYYNIYGGQQF 177
S +G GY + A Y GG+ +
Sbjct: 288 GSGFGGEGYGRGGEGAYLGYPRGGGEGY 315
>UNIPROTKB|A6H6Y0 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 OrthoDB:EOG49W2FZ
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:DAAA02018245
UniGene:Bt.52882 EMBL:BC146038 IPI:IPI00696935 SMR:A6H6Y0
STRING:A6H6Y0 Ensembl:ENSBTAT00000018540 InParanoid:A6H6Y0
Uniprot:A6H6Y0
Length = 355
Score = 168 (64.2 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 158 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Score = 156 (60.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 299
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYYNI--YGGQQ 176
Q G Y + YG Y GY T Y NYY Y QQ
Sbjct: 300 QGYGNYGYNSQGYGGYGGYDY-TGYN-NYYGYGDYSNQQ 336
>UNIPROTKB|E2RIX2 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0042162 "telomeric DNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 KO:K13044 CTD:3184 OMA:PNQNWNQ
InterPro:IPR012956 Pfam:PF08143 EMBL:AAEX03016719
RefSeq:XP_857957.1 Ensembl:ENSCAFT00000038801 GeneID:478450
KEGG:cfa:478450 Uniprot:E2RIX2
Length = 355
Score = 168 (64.2 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 158 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Score = 156 (60.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 299
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYYNI--YGGQQ 176
Q G Y + YG Y GY T Y NYY Y QQ
Sbjct: 300 QGYGNYGYNSQGYGGYGGYDY-TGYN-NYYGYGDYSNQQ 336
>UNIPROTKB|Q14103 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=NAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=NAS] [GO:0042162 "telomeric DNA binding" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA] [GO:0006396
"RNA processing" evidence=TAS] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AF026126
GO:GO:0005829 GO:GO:0045893 GO:GO:0005654 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0006401 GO:GO:0048255 GO:GO:0030529 EMBL:CH471057
GO:GO:0000398 GO:GO:0042162 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K13044 EMBL:AC124016 OrthoDB:EOG49W2FZ EMBL:D55671 EMBL:D55672
EMBL:D55673 EMBL:D55674 EMBL:AK292707 EMBL:BC002401 EMBL:BC023977
EMBL:BC026015 EMBL:X03910 EMBL:AF039575 EMBL:M94630 IPI:IPI00028888
IPI:IPI00220683 IPI:IPI00220684 IPI:IPI00220685 PIR:A24016
PIR:A44192 PIR:B48138 RefSeq:NP_001003810.1 RefSeq:NP_002129.2
RefSeq:NP_112737.1 RefSeq:NP_112738.1 UniGene:Hs.480073 PDB:1HD0
PDB:1HD1 PDB:1IQT PDB:1WTB PDB:1X0F PDB:2Z5N PDBsum:1HD0
PDBsum:1HD1 PDBsum:1IQT PDBsum:1WTB PDBsum:1X0F PDBsum:2Z5N
ProteinModelPortal:Q14103 SMR:Q14103 IntAct:Q14103
MINT:MINT-5001251 STRING:Q14103 PhosphoSite:Q14103 DMDM:13124489
SWISS-2DPAGE:Q14103 PaxDb:Q14103 PRIDE:Q14103 DNASU:3184
Ensembl:ENST00000313899 Ensembl:ENST00000352301
Ensembl:ENST00000353341 GeneID:3184 KEGG:hsa:3184 UCSC:uc003hmm.1
UCSC:uc003hmn.1 UCSC:uc003hmo.1 UCSC:uc003hmp.1 CTD:3184
GeneCards:GC04M083274 HGNC:HGNC:5036 HPA:HPA004911 MIM:601324
neXtProt:NX_Q14103 PharmGKB:PA29361 InParanoid:Q14103 OMA:PNQNWNQ
PhylomeDB:Q14103 ChiTaRS:HNRNPD EvolutionaryTrace:Q14103
GenomeRNAi:3184 NextBio:12644 PMAP-CutDB:Q14103 ArrayExpress:Q14103
Bgee:Q14103 Genevestigator:Q14103 GermOnline:ENSG00000138668
InterPro:IPR012956 Pfam:PF08143 Uniprot:Q14103
Length = 355
Score = 168 (64.2 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 158 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Score = 156 (60.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 299
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYYNI--YGGQQ 176
Q G Y + YG Y GY T Y NYY Y QQ
Sbjct: 300 QGYGNYGYNSQGYGGYGGYDY-TGYN-NYYGYGDYSNQQ 336
>MGI|MGI:101947 [details] [associations]
symbol:Hnrnpd "heterogeneous nuclear ribonucleoprotein D"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=ISO] [GO:0042162
"telomeric DNA binding" evidence=ISO] [GO:0043488 "regulation of
mRNA stability" evidence=IMP] [GO:0048255 "mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:101947 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 GO:GO:0048255 GO:GO:0030529
GO:GO:0043488 GO:GO:0042162 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ ChiTaRS:HNRNPD
InterPro:IPR012956 Pfam:PF08143 EMBL:U11273 EMBL:U11274
EMBL:BC011172 EMBL:BC049098 IPI:IPI00230086 IPI:IPI00330958
IPI:IPI00336873 IPI:IPI00336874 PIR:I49069 PIR:I49070
RefSeq:NP_001070733.1 RefSeq:NP_001070734.1 RefSeq:NP_001070735.1
RefSeq:NP_031542.2 UniGene:Mm.150231 ProteinModelPortal:Q60668
SMR:Q60668 DIP:DIP-31411N IntAct:Q60668 STRING:Q60668
PhosphoSite:Q60668 PaxDb:Q60668 PRIDE:Q60668
Ensembl:ENSMUST00000019128 Ensembl:ENSMUST00000172361 GeneID:11991
KEGG:mmu:11991 UCSC:uc008ygt.1 UCSC:uc008ygu.1 InParanoid:Q60668
NextBio:280159 Bgee:Q60668 Genevestigator:Q60668
GermOnline:ENSMUSG00000000568 Uniprot:Q60668
Length = 355
Score = 168 (64.2 bits), Expect = 2.7e-11, P = 2.7e-11
Identities = 36/110 (32%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 158 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 205
Score = 156 (60.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 183 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 242
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 243 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 299
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYYNI--YGGQQ 176
Q G Y + YG Y GY T Y NYY Y QQ
Sbjct: 300 QGYGNYGYNSQGYGGYGGYDY-TGYN-NYYGYGDYSNQQ 336
>UNIPROTKB|E7EWI9 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC079305 HGNC:HGNC:24941
ChiTaRS:HNRNPA3 IPI:IPI00939124 ProteinModelPortal:E7EWI9
SMR:E7EWI9 Ensembl:ENST00000416446 ArrayExpress:E7EWI9 Bgee:E7EWI9
Uniprot:E7EWI9
Length = 322
Score = 155 (59.6 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF---KDPEAAMRA 81
K+F+GGL++ET D++R +FE++G + + VV+ D T RS+G+GFVT+ ++ +AAM
Sbjct: 14 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-- 71
Query: 82 CQNPSPVIDGR 92
C P V DGR
Sbjct: 72 CARPHKV-DGR 81
Score = 139 (54.0 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T KIFVGG+ +T+ +R YFE++G+I V+ D+ +G+ +G+ FVTF D
Sbjct: 97 PGAH--LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 154
Query: 75 PEAAMRACQNPSPVIDGRRANCNLA-SLGAHKTRPPTPQHGGG 116
+ + I+G NC + +L + + Q G G
Sbjct: 155 HDTVDKIVVQKYHTINGH--NCEVKKALSKQEMQSAGSQRGRG 195
Score = 48 (22.0 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 23/71 (32%), Positives = 30/71 (42%)
Query: 115 GGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYAL-NY----- 168
GG + PG + Y GG Y +Q G Y GY GY++ + NY
Sbjct: 218 GGNYGGGPGYSSRGGYGGG-GPGYGNQGGG-YG---GGGGYDGYNEGGNFGGGNYGGGGN 272
Query: 169 YNIYG---GQQ 176
YN +G GQQ
Sbjct: 273 YNDFGNYSGQQ 283
>UNIPROTKB|F1RVC9 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0042162 "telomeric DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 EMBL:CU627987
Ensembl:ENSSSCT00000010129 OMA:DASSHGW Uniprot:F1RVC9
Length = 202
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 30 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 89
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 90 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 146
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYYNI--YGGQQ 176
Q G Y + YG Y GY T Y NYY Y QQ
Sbjct: 147 QGYGNYGYNSPGYGGYGGYDY-TGYN-NYYGYGDYSNQQ 183
>UNIPROTKB|I3LPG0 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:FP690339 Ensembl:ENSSSCT00000027694 Uniprot:I3LPG0
Length = 332
Score = 167 (63.8 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF+ + +
Sbjct: 73 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 132
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
C+ I+ + C A + PT GR R P A+ G +
Sbjct: 133 VCEIHFHEINNKMVECKKAQ--PKEVMSPTGS-ARGRSRVMP--YGMDAFMLGIGM--LG 185
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNI 171
P Q T Y++ YTG + Y + +
Sbjct: 186 YPGFQAT-TYASRSYTGLAPGYTYQFPEFRV 215
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 31/72 (43%), Positives = 49/72 (68%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRR 93
S +DGR+
Sbjct: 67 MNGKS--VDGRQ 76
>UNIPROTKB|F1MS42 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0005844
"polysome" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005844 GeneTree:ENSGT00700000104255 OMA:GLPGSHP
EMBL:DAAA02045450 EMBL:DAAA02045451 IPI:IPI00718423
Ensembl:ENSBTAT00000012926 Uniprot:F1MS42
Length = 342
Score = 167 (63.8 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF+ + +
Sbjct: 86 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 145
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
C+ I+ + C A + PT GR R P A+ G +
Sbjct: 146 VCEIHFHEINNKMVECKKAQ--PKEVMSPTGS-ARGRSRVMP--YGMDAFMLGIGM--LG 198
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNI 171
P Q T Y++ YTG + Y + +
Sbjct: 199 YPGFQAT-TYASRSYTGLAPGYTYQFPEFRV 228
Score = 158 (60.7 bits), Expect = 9.6e-10, P = 9.6e-10
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
K+F+GGL+W+T ++ +R YF QFGE+ E +V+ D T RS+G+GFVTF D
Sbjct: 1 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 50
>UNIPROTKB|E2RFV7 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 GeneTree:ENSGT00700000104376 CTD:220988 OMA:QGHDPKE
EMBL:AAEX03017802 RefSeq:XP_543761.2 ProteinModelPortal:E2RFV7
Ensembl:ENSCAFT00000021410 GeneID:608074 KEGG:cfa:608074
Uniprot:E2RFV7
Length = 378
Score = 155 (59.6 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF---KDPEAAMRA 81
K+F+GGL++ET D++R +FE++G + + VV+ D T RS+G+GFVT+ ++ +AAM
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-- 93
Query: 82 CQNPSPVIDGR 92
C P V DGR
Sbjct: 94 CARPHKV-DGR 103
Score = 139 (54.0 bits), Expect = 8.0e-09, Sum P(2) = 8.0e-09
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T KIFVGG+ +T+ +R YFE++G+I V+ D+ +G+ +G+ FVTF D
Sbjct: 119 PGAH--LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
Query: 75 PEAAMRACQNPSPVIDGRRANCNLA-SLGAHKTRPPTPQHGGG 116
+ + I+G NC + +L + + Q G G
Sbjct: 177 HDTVDKIVVQKYHTINGH--NCEVKKALSKQEMQSAGSQRGRG 217
Score = 50 (22.7 bits), Expect = 3.8e-11, Sum P(2) = 3.8e-11
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 115 GGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYAL-NY----- 168
GG + PG + Y GG Y +Q G + GY GY++ + NY
Sbjct: 273 GGNYGGGPGYSSRGGYGGG-GPGYGNQGGG---YGGGGGGYDGYNEGGNFGGGNYGGGGN 328
Query: 169 YNIYG---GQQ 176
YN +G GQQ
Sbjct: 329 YNDFGNYSGQQ 339
>UNIPROTKB|F2Z5B4 [details] [associations]
symbol:HNRNPA3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013 KO:K12741
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:CU862048
RefSeq:XP_003133549.1 ProteinModelPortal:F2Z5B4 SMR:F2Z5B4
Ensembl:ENSSSCT00000017409 GeneID:100516520 KEGG:ssc:100516520
Uniprot:F2Z5B4
Length = 379
Score = 155 (59.6 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF---KDPEAAMRA 81
K+F+GGL++ET D++R +FE++G + + VV+ D T RS+G+GFVT+ ++ +AAM
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-- 93
Query: 82 CQNPSPVIDGR 92
C P V DGR
Sbjct: 94 CARPHKV-DGR 103
Score = 139 (54.0 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T KIFVGG+ +T+ +R YFE++G+I V+ D+ +G+ +G+ FVTF D
Sbjct: 119 PGAH--LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
Query: 75 PEAAMRACQNPSPVIDGRRANCNLA-SLGAHKTRPPTPQHGGG 116
+ + I+G NC + +L + + Q G G
Sbjct: 177 HDTVDKIVVQKYHTINGH--NCEVKKALSKQEMQSAGSQRGRG 217
Score = 50 (22.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 115 GGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYAL-NY----- 168
GG + PG + Y GG Y +Q G + GY GY++ + NY
Sbjct: 274 GGNYGGGPGYSSRGGYGGG-GPGYGNQGGG---YGGGGGGYDGYNEGGNFGGGNYGGGGN 329
Query: 169 YNIYG---GQQ 176
YN +G GQQ
Sbjct: 330 YNDFGNYSGQQ 340
>RGD|727807 [details] [associations]
symbol:Hnrnpa3 "heterogeneous nuclear ribonucleoprotein A3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IMP] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0035770
"ribonucleoprotein granule" evidence=IDA] [GO:0043005 "neuron
projection" evidence=IDA] [GO:0051028 "mRNA transport"
evidence=IMP] [GO:0051033 "RNA transmembrane transporter activity"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:727807 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0043005 GO:GO:0005681
GO:GO:0051028 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF CTD:220988
EMBL:AY363226 EMBL:AY363227 EMBL:BC081878 IPI:IPI00382376
IPI:IPI00464458 RefSeq:NP_001104764.1 RefSeq:NP_001104765.1
RefSeq:NP_937765.1 UniGene:Rn.107690 UniGene:Rn.99947
ProteinModelPortal:Q6URK4 SMR:Q6URK4 STRING:Q6URK4
PhosphoSite:Q6URK4 PRIDE:Q6URK4 GeneID:362152 KEGG:rno:362152
UCSC:RGD:727807 InParanoid:Q6URK4 NextBio:678824
ArrayExpress:Q6URK4 Genevestigator:Q6URK4 GO:GO:0035770
GO:GO:0051033 Uniprot:Q6URK4
Length = 379
Score = 155 (59.6 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF---KDPEAAMRA 81
K+F+GGL++ET D++R +FE++G + + VV+ D T RS+G+GFVT+ ++ +AAM
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-- 93
Query: 82 CQNPSPVIDGR 92
C P V DGR
Sbjct: 94 CARPHKV-DGR 103
Score = 139 (54.0 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T KIFVGG+ +T+ +R YFE++G+I V+ D+ +G+ +G+ FVTF D
Sbjct: 119 PGAH--LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
Query: 75 PEAAMRACQNPSPVIDGRRANCNLA-SLGAHKTRPPTPQHGGG 116
+ + I+G NC + +L + + Q G G
Sbjct: 177 HDTVDKIVVQKYHTINGH--NCEVKKALSKQEMQSAGSQRGRG 217
Score = 50 (22.7 bits), Expect = 3.9e-11, Sum P(2) = 3.9e-11
Identities = 22/71 (30%), Positives = 30/71 (42%)
Query: 115 GGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYAL-NY----- 168
GG + PG + Y GG Y +Q G + GY GY++ + NY
Sbjct: 274 GGNYGGGPGYSSRGGYGGG-GPGYGNQGGG---YGGGGGGYDGYNEGGNFGGGNYGGGGN 329
Query: 169 YNIYG---GQQ 176
YN +G GQQ
Sbjct: 330 YNDFGNYSGQQ 340
>UNIPROTKB|O43347 [details] [associations]
symbol:MSI1 "RNA-binding protein Musashi homolog 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005844 "polysome" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0009725 "response to
hormone stimulus" evidence=IEA] [GO:0030855 "epithelial cell
differentiation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0007399 "nervous system development"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0007399 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
EMBL:AB012851 EMBL:AC003982 EMBL:AB072590 EMBL:AB072591
EMBL:AB072592 EMBL:AB073212 IPI:IPI00001007 RefSeq:NP_002433.1
UniGene:Hs.158311 ProteinModelPortal:O43347 SMR:O43347
IntAct:O43347 MINT:MINT-1432501 STRING:O43347 PhosphoSite:O43347
PaxDb:O43347 PRIDE:O43347 DNASU:4440 Ensembl:ENST00000257552
GeneID:4440 KEGG:hsa:4440 UCSC:uc001tye.1 CTD:4440
GeneCards:GC12M120779 HGNC:HGNC:7330 HPA:CAB022337 MIM:603328
neXtProt:NX_O43347 PharmGKB:PA31137 InParanoid:O43347 OMA:GLPGSHP
OrthoDB:EOG48GW3J GenomeRNAi:4440 NextBio:17313 ArrayExpress:O43347
Bgee:O43347 CleanEx:HS_MSI1 Genevestigator:O43347
GermOnline:ENSG00000135097 Uniprot:O43347
Length = 362
Score = 167 (63.8 bits), Expect = 4.2e-11, P = 4.2e-11
Identities = 46/151 (30%), Positives = 73/151 (48%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF+ + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
C+ I+ + C A + PT GR R P A+ G +
Sbjct: 166 VCEIHFHEINNKMVECKKAQ--PKEVMSPTGS-ARGRSRVMP--YGMDAFMLGIGM--LG 218
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNI 171
P Q T Y++ YTG + Y + +
Sbjct: 219 YPGFQAT-TYASRSYTGLAPGYTYQFPEFRV 248
Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
K+F+GGL+W+T ++ +R YF QFGE+ E +V+ D T RS+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>RGD|1309950 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein D-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309950 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 166 (63.5 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 37/114 (32%), Positives = 57/114 (50%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T+ K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+ +DG+ + A K PP GG P Y G F
Sbjct: 108 VLELKEHKLDGKLIDPKRAKALKGK-EPPKKVFVGG-LSPDTSEEQIKEYFGAF 159
Score = 140 (54.3 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 49/169 (28%), Positives = 72/169 (42%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPA--------YHGGFSS 136
I + +A R Q GGR A G ++ GF++
Sbjct: 197 RYHQIGSGKCEIKVAQ-PKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNN 255
Query: 137 SYVHQPTGQYTFPY-----SAYG---YTGYSQDTM-YALNYYNIYGGQQ 176
Y Q G Y Y S YG YTGY+ + Y Y + Y GQQ
Sbjct: 256 -YYDQGYGNYNSAYGDESYSGYGGYDYTGYNYGSYGYGQGYTD-YSGQQ 302
>UNIPROTKB|Q3SWU3 [details] [associations]
symbol:Hnrpdl "Heterogeneous nuclear ribonucleoprotein
D-like" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1309950
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987 KO:K13044
EMBL:BC104683 IPI:IPI00363719 RefSeq:NP_001028868.1
UniGene:Rn.102146 ProteinModelPortal:Q3SWU3 SMR:Q3SWU3
PhosphoSite:Q3SWU3 PRIDE:Q3SWU3 GeneID:305178 KEGG:rno:305178
NextBio:654187 Genevestigator:Q3SWU3 Uniprot:Q3SWU3
Length = 322
Score = 166 (63.5 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 37/114 (32%), Positives = 57/114 (50%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T+ K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+ +DG+ + A K PP GG P Y G F
Sbjct: 108 VLELKEHKLDGKLIDPKRAKALKGK-EPPKKVFVGG-LSPDTSEEQIKEYFGAF 159
Score = 140 (54.3 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 49/169 (28%), Positives = 72/169 (42%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPA--------YHGGFSS 136
I + +A R Q GGR A G ++ GF++
Sbjct: 197 RYHQIGSGKCEIKVAQ-PKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNN 255
Query: 137 SYVHQPTGQYTFPY-----SAYG---YTGYSQDTM-YALNYYNIYGGQQ 176
Y Q G Y Y S YG YTGY+ + Y Y + Y GQQ
Sbjct: 256 -YYDQGYGNYNSAYGDESYSGYGGYDYTGYNYGSYGYGQGYTD-YSGQQ 302
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+++T +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 66
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 67 ARPHKVDGR 75
Score = 124 (48.7 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 29/95 (30%), Positives = 50/95 (52%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVG +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 80 KRAVSREDSRRPGAH--LTVKKIFVGE---DTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 134
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 135 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 167
>UNIPROTKB|F1LRH1 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005844 "polysome" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:628778 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005844 GeneTree:ENSGT00700000104255
IPI:IPI00202463 Ensembl:ENSRNOT00000001532 ArrayExpress:F1LRH1
Uniprot:F1LRH1
Length = 329
Score = 166 (63.5 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 46/151 (30%), Positives = 72/151 (47%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + ++ YFEQFG++ +A+++ DK T R +G+GFVTF+ + +
Sbjct: 73 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 132
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
C+ I+ + C A + PT GR R P A+ G +
Sbjct: 133 VCEIHFHEINNKMVECKKAQ--PKEVMSPTGS-ARGRSRVMP--YGMDAFMLGIGM--LG 185
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNI 171
P Q T Y++ YTG + Y + +
Sbjct: 186 YPGFQAT-TYASRSYTGLAPGYTYQFPEFRV 215
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 166 (63.5 bits), Expect = 4.9e-11, P = 4.9e-11
Identities = 36/116 (31%), Positives = 61/116 (52%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+F+GGL+W+T + ++ YF +FG++++ + D TGRS+G+GFV FK+ E+
Sbjct: 71 NEEDEGKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESV 130
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+ ++G+ + A A KT+ P + G P Y GGF
Sbjct: 131 DKVMDQKEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 184
Score = 155 (59.6 bits), Expect = 2.4e-09, P = 2.4e-09
Identities = 49/158 (31%), Positives = 74/158 (46%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 162 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 221
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 222 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 278
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNY-YNIYGGQQ 176
Q G Y + YG Y GY T Y Y Y Y QQ
Sbjct: 279 QGYGSYGYNSQGYGGYGGYDY-TGYNSYYGYGDYSNQQ 315
>UNIPROTKB|D4A1X0 [details] [associations]
symbol:D4A1X0 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0097157
GO:GO:0048025 OrthoDB:EOG4HQDKF IPI:IPI00778370
ProteinModelPortal:D4A1X0 Ensembl:ENSRNOT00000061082 Uniprot:D4A1X0
Length = 312
Score = 154 (59.3 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 30/71 (42%), Positives = 47/71 (66%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD-PEAAMRA 81
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF E +
Sbjct: 8 FCKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDVAM 67
Query: 82 CQNPSPVIDGR 92
P IDGR
Sbjct: 68 AARPHS-IDGR 77
Score = 132 (51.5 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 93 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGK-RGFGFVTFDD 149
Score = 46 (21.3 bits), Expect = 5.7e-11, Sum P(2) = 5.7e-11
Identities = 14/46 (30%), Positives = 19/46 (41%)
Query: 116 GRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQD 161
G F +PG +GG Y +Q G Y Y YG Y ++
Sbjct: 241 GNFGGSPGYGGGRGGYGGGGPGYGNQGGG-YGGGYDNYGGGNYGRN 285
Score = 39 (18.8 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 11/37 (29%), Positives = 15/37 (40%)
Query: 110 TPQHGGGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQY 146
+P +GGGR G GG+ Y + G Y
Sbjct: 246 SPGYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNY 282
>UNIPROTKB|G3V6A4 [details] [associations]
symbol:Hnrpd "Protein Hnrpd" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 GeneTree:ENSGT00700000104347 KO:K13044
InterPro:IPR012956 Pfam:PF08143 RefSeq:NP_001076009.1
UniGene:Rn.94022 GeneID:79256 KEGG:rno:79256 CTD:79256
NextBio:614748 EMBL:CH474022 Ensembl:ENSRNOT00000003158
Uniprot:G3V6A4
Length = 304
Score = 165 (63.1 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 35/110 (31%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FG++++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 156 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 203
Score = 116 (45.9 bits), Expect = 0.00013, P = 0.00013
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPE 76
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEE 232
>UNIPROTKB|P51991 [details] [associations]
symbol:HNRNPA3 "Heterogeneous nuclear ribonucleoprotein A3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0030529
"ribonucleoprotein complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471058
GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
EMBL:AC079305 HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF
HPA:HPA001666 EMBL:AY363225 EMBL:BC112027 EMBL:BC113470
IPI:IPI00419373 IPI:IPI00455134 PIR:I52962 RefSeq:NP_919223.1
UniGene:Hs.516539 ProteinModelPortal:P51991 SMR:P51991
IntAct:P51991 MINT:MINT-4999802 STRING:P51991 PhosphoSite:P51991
DMDM:51338779 PaxDb:P51991 PRIDE:P51991 Ensembl:ENST00000392524
Ensembl:ENST00000411529 Ensembl:ENST00000435711 GeneID:220988
KEGG:hsa:220988 UCSC:uc002ulb.1 CTD:220988 GeneCards:GC02P178077
HGNC:HGNC:24941 MIM:605372 neXtProt:NX_P51991 PharmGKB:PA162391169
InParanoid:P51991 OMA:QGHDPKE PhylomeDB:P51991 ChiTaRS:HNRNPA3
GenomeRNAi:220988 NextBio:91133 PMAP-CutDB:P51991
ArrayExpress:P51991 Bgee:P51991 CleanEx:HS_HNRNPA3
Genevestigator:P51991 GermOnline:ENSG00000170144 Uniprot:P51991
Length = 378
Score = 155 (59.6 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 32/71 (45%), Positives = 50/71 (70%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF---KDPEAAMRA 81
K+F+GGL++ET D++R +FE++G + + VV+ D T RS+G+GFVT+ ++ +AAM
Sbjct: 36 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAM-- 93
Query: 82 CQNPSPVIDGR 92
C P V DGR
Sbjct: 94 CARPHKV-DGR 103
Score = 139 (54.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 33/103 (32%), Positives = 54/103 (52%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T KIFVGG+ +T+ +R YFE++G+I V+ D+ +G+ +G+ FVTF D
Sbjct: 119 PGAH--LTVKKIFVGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 176
Query: 75 PEAAMRACQNPSPVIDGRRANCNLA-SLGAHKTRPPTPQHGGG 116
+ + I+G NC + +L + + Q G G
Sbjct: 177 HDTVDKIVVQKYHTINGH--NCEVKKALSKQEMQSAGSQRGRG 217
Score = 48 (22.0 bits), Expect = 6.1e-11, Sum P(2) = 6.1e-11
Identities = 23/71 (32%), Positives = 30/71 (42%)
Query: 115 GGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYAL-NY----- 168
GG + PG + Y GG Y +Q G Y GY GY++ + NY
Sbjct: 274 GGNYGGGPGYSSRGGYGGG-GPGYGNQGGG-YG---GGGGYDGYNEGGNFGGGNYGGGGN 328
Query: 169 YNIYG---GQQ 176
YN +G GQQ
Sbjct: 329 YNDFGNYSGQQ 339
>MGI|MGI:107376 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0005844 "polysome" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009725
"response to hormone stimulus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107376 GO:GO:0005634 GO:GO:0005737 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0009725 GO:GO:0005844
GO:GO:0030855 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 OMA:GLPGSHP OrthoDB:EOG48GW3J
EMBL:D49654 EMBL:AK084019 IPI:IPI00121300 IPI:IPI00462260
RefSeq:NP_032655.1 UniGene:Mm.5077 PDB:1UAW PDB:2MSS PDB:2MST
PDB:2RS2 PDBsum:1UAW PDBsum:2MSS PDBsum:2MST PDBsum:2RS2
ProteinModelPortal:Q61474 SMR:Q61474 STRING:Q61474
PhosphoSite:Q61474 PaxDb:Q61474 PRIDE:Q61474 DNASU:17690
Ensembl:ENSMUST00000150779 GeneID:17690 KEGG:mmu:17690
UCSC:uc008zdu.1 UCSC:uc008zdv.1 InParanoid:Q61474 ChiTaRS:MSI1
EvolutionaryTrace:Q61474 NextBio:292270 Bgee:Q61474 CleanEx:MM_MSI1
Genevestigator:Q61474 GermOnline:ENSMUSG00000054256 Uniprot:Q61474
Length = 362
Score = 166 (63.5 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 46/151 (30%), Positives = 72/151 (47%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + ++ YFEQFG++ +A+++ DK T R +G+GFVTF+ + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
C+ I+ + C A + PT GR R P A+ G +
Sbjct: 166 VCEIHFHEINNKMVECKKAQ--PKEVMSPTGS-ARGRSRVMP--YGMDAFMLGIGM--LG 218
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNI 171
P Q T Y++ YTG + Y + +
Sbjct: 219 YPGFQAT-TYASRSYTGLAPGYTYQFPEFRV 248
Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
K+F+GGL+W+T ++ +R YF QFGE+ E +V+ D T RS+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>RGD|628778 [details] [associations]
symbol:Msi1 "musashi RNA-binding protein 1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=NAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737
"cytoplasm" evidence=IEA;ISO] [GO:0005844 "polysome"
evidence=IEA;ISO] [GO:0008266 "poly(U) RNA binding"
evidence=IEA;ISO] [GO:0009725 "response to hormone stimulus"
evidence=IMP] [GO:0030855 "epithelial cell differentiation"
evidence=IEP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 166 (63.5 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 46/151 (30%), Positives = 72/151 (47%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + ++ YFEQFG++ +A+++ DK T R +G+GFVTF+ + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
C+ I+ + C A + PT GR R P A+ G +
Sbjct: 166 VCEIHFHEINNKMVECKKAQ--PKEVMSPTGS-ARGRSRVMP--YGMDAFMLGIGM--LG 218
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNI 171
P Q T Y++ YTG + Y + +
Sbjct: 219 YPGFQAT-TYASRSYTGLAPGYTYQFPEFRV 248
Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
K+F+GGL+W+T ++ +R YF QFGE+ E +V+ D T RS+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>UNIPROTKB|Q8K3P4 [details] [associations]
symbol:Msi1 "RNA-binding protein Musashi homolog 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:628778 GO:GO:0005634
GO:GO:0005737 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0009725 GO:GO:0005844 GO:GO:0030855
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K14411
CTD:4440 OrthoDB:EOG48GW3J EMBL:AY043393 IPI:IPI00202463
RefSeq:NP_683688.1 UniGene:Rn.162146 ProteinModelPortal:Q8K3P4
SMR:Q8K3P4 STRING:Q8K3P4 PhosphoSite:Q8K3P4 GeneID:259272
KEGG:rno:259272 NextBio:624325 ArrayExpress:Q8K3P4
Genevestigator:Q8K3P4 Uniprot:Q8K3P4
Length = 362
Score = 166 (63.5 bits), Expect = 6.2e-11, P = 6.2e-11
Identities = 46/151 (30%), Positives = 72/151 (47%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + ++ YFEQFG++ +A+++ DK T R +G+GFVTF+ + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
C+ I+ + C A + PT GR R P A+ G +
Sbjct: 166 VCEIHFHEINNKMVECKKAQ--PKEVMSPTGS-ARGRSRVMP--YGMDAFMLGIGM--LG 218
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNI 171
P Q T Y++ YTG + Y + +
Sbjct: 219 YPGFQAT-TYASRSYTGLAPGYTYQFPEFRV 248
Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
K+F+GGL+W+T ++ +R YF QFGE+ E +V+ D T RS+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>UNIPROTKB|E1BZE6 [details] [associations]
symbol:LOC100859627 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0071013
GeneTree:ENSGT00700000104376 OMA:QGHDPKE EMBL:AADN02020007
EMBL:AADN02020008 EMBL:AADN02020009 EMBL:AADN02020010
EMBL:AADN02020011 EMBL:AADN02020012 EMBL:AADN02020013
IPI:IPI00812068 ProteinModelPortal:E1BZE6
Ensembl:ENSGALT00000038715 Uniprot:E1BZE6
Length = 380
Score = 151 (58.2 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 35/89 (39%), Positives = 58/89 (65%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTF---KDPEAAMRA 81
K+F+GGL++ET D++R +FE++G + + VV+ D T RS+G+GFVT+ ++ +AAM A
Sbjct: 34 KLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVTYSCVEEVDAAMSA 93
Query: 82 CQNP--SPVIDGRRANCNLASL--GAHKT 106
+ V++ +RA S+ GAH T
Sbjct: 94 RPHKVDGRVVEPKRAVSREDSVKPGAHLT 122
Score = 144 (55.7 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 33/103 (32%), Positives = 55/103 (53%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T KIFVGG+ +T+ +R YFE++G+I V+ D+ +G+ +G+ FVTF D
Sbjct: 117 PGAH--LTVKKIFVGGIKEDTEEYNLREYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 174
Query: 75 PEAAMRACQNPSPVIDGRRANCNLA-SLGAHKTRPPTPQHGGG 116
+ + I+G NC + +L + + + Q G G
Sbjct: 175 HDTVDKIVVQKYHTINGH--NCEVKKALSKQEMQTASSQRGRG 215
Score = 54 (24.1 bits), Expect = 6.6e-11, Sum P(2) = 6.6e-11
Identities = 23/71 (32%), Positives = 30/71 (42%)
Query: 115 GGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYAL-NY----- 168
GG + PG + Y GG Y + P G Y GY GY++ + NY
Sbjct: 273 GGNYGGGPGYGSRGGYGGGGGPGYGN-PGGGYGG--GGGGYDGYNEGGNFGGGNYGGSGN 329
Query: 169 YNIYG---GQQ 176
YN +G GQQ
Sbjct: 330 YNDFGNYSGQQ 340
>UNIPROTKB|Q5ZI72 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000234441
HOVERGEN:HBG002295 EMBL:AJ720912 IPI:IPI00591109
RefSeq:NP_001026313.1 UniGene:Gga.4605 HSSP:Q14103
ProteinModelPortal:Q5ZI72 SMR:Q5ZI72 PRIDE:Q5ZI72
Ensembl:ENSGALT00000018235 GeneID:422601 KEGG:gga:422601 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 NextBio:20825211
Uniprot:Q5ZI72
Length = 301
Score = 164 (62.8 bits), Expect = 7.9e-11, P = 7.9e-11
Identities = 36/110 (32%), Positives = 55/110 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A K PP GG P Y G F
Sbjct: 91 KEHKLDGKLIDPKRAKALKGK-EPPKKVFVGG-LSPDTSEEQIKEYFGAF 138
Score = 140 (54.3 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 43/157 (27%), Positives = 66/157 (42%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + ++
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 175
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPA--------YHGGFSS 136
I + +A R Q GG+ + G ++ GF++
Sbjct: 176 RYHQIGSGKCEIKVAQ-PKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNN 234
Query: 137 SYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
Y Q G Y YS Y+GY NY N YG
Sbjct: 235 -YYDQGYGNYNSAYSDQSYSGYGGYDYSGYNYPN-YG 269
>UNIPROTKB|F1NCW4 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
GeneTree:ENSGT00700000104347 OMA:PNQNWNQ EMBL:AADN02009040
IPI:IPI00819680 Ensembl:ENSGALT00000038011 ArrayExpress:F1NCW4
Uniprot:F1NCW4
Length = 258
Score = 162 (62.1 bits), Expect = 8.0e-11, P = 8.0e-11
Identities = 35/110 (31%), Positives = 58/110 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 60
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y G F
Sbjct: 61 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGAF 108
Score = 157 (60.3 bits), Expect = 4.8e-10, P = 4.8e-10
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 86 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 145
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 146 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRARGRGG--GPSQNWNQGYSN-YWN 202
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYYNI--YGGQQ 176
Q G Y + YG Y GY T Y NYY Y QQ
Sbjct: 203 QGYGNYGYNSQGYGGYGGYDY-TGYN-NYYGYSDYSNQQ 239
>RGD|620365 [details] [associations]
symbol:Hnrpd "heterogeneous nuclear ribonucleoprotein D"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000291 "nuclear-transcribed mRNA catabolic
process, exonucleolytic" evidence=TAS] [GO:0003723 "RNA binding"
evidence=ISO;ISS] [GO:0003729 "mRNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006913 "nucleocytoplasmic transport"
evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA;ISO;ISS] [GO:0042162 "telomeric DNA binding"
evidence=IEA;ISO;ISS] [GO:0043488 "regulation of mRNA stability"
evidence=IEA;ISO] [GO:0048255 "mRNA stabilization" evidence=IDA]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620365 GO:GO:0005829 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006913 GO:GO:0048255 GO:GO:0030529
GO:GO:0042162 HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044
OrthoDB:EOG49W2FZ GermOnline:ENSRNOG00000002292 InterPro:IPR012956
Pfam:PF08143 EMBL:AB046615 EMBL:AB046616 EMBL:AB046617
EMBL:AB046618 IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384
IPI:IPI00231385 RefSeq:NP_001076008.1 RefSeq:NP_001076009.1
RefSeq:NP_001076010.1 RefSeq:NP_077380.2 UniGene:Rn.94022
ProteinModelPortal:Q9JJ54 SMR:Q9JJ54 STRING:Q9JJ54
PhosphoSite:Q9JJ54 PRIDE:Q9JJ54 GeneID:79256 KEGG:rno:79256
UCSC:RGD:620365 CTD:79256 InParanoid:Q9JJ54 NextBio:614748
ArrayExpress:Q9JJ54 Genevestigator:Q9JJ54 GO:GO:0000291
Uniprot:Q9JJ54
Length = 353
Score = 165 (63.1 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 35/110 (31%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FG++++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 156 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 203
Score = 155 (59.6 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 49/158 (31%), Positives = 74/158 (46%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 297
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNY-YNIYGGQQ 176
Q G Y + YG Y GY T Y Y Y Y QQ
Sbjct: 298 QGYGSYGYNSQGYGGYGGYDY-TGYNSYYGYGDYSNQQ 334
>UNIPROTKB|Q9JJ54 [details] [associations]
symbol:Hnrnpd "Heterogeneous nuclear ribonucleoprotein D0"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0005829
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006913 GO:GO:0048255 GO:GO:0030529 GO:GO:0042162
HOGENOM:HOG000234441 HOVERGEN:HBG002295 KO:K13044 OrthoDB:EOG49W2FZ
GermOnline:ENSRNOG00000002292 InterPro:IPR012956 Pfam:PF08143
EMBL:AB046615 EMBL:AB046616 EMBL:AB046617 EMBL:AB046618
IPI:IPI00201032 IPI:IPI00231383 IPI:IPI00231384 IPI:IPI00231385
RefSeq:NP_001076008.1 RefSeq:NP_001076009.1 RefSeq:NP_001076010.1
RefSeq:NP_077380.2 UniGene:Rn.94022 ProteinModelPortal:Q9JJ54
SMR:Q9JJ54 STRING:Q9JJ54 PhosphoSite:Q9JJ54 PRIDE:Q9JJ54
GeneID:79256 KEGG:rno:79256 UCSC:RGD:620365 CTD:79256
InParanoid:Q9JJ54 NextBio:614748 ArrayExpress:Q9JJ54
Genevestigator:Q9JJ54 GO:GO:0000291 Uniprot:Q9JJ54
Length = 353
Score = 165 (63.1 bits), Expect = 9.3e-11, P = 9.3e-11
Identities = 35/110 (31%), Positives = 59/110 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FG++++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 156 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 203
Score = 155 (59.6 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 49/158 (31%), Positives = 74/158 (46%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 240
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 241 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGG--GPSQNWNQGYSN-YWN 297
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNY-YNIYGGQQ 176
Q G Y + YG Y GY T Y Y Y Y QQ
Sbjct: 298 QGYGSYGYNSQGYGGYGGYDY-TGYNSYYGYGDYSNQQ 334
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 163 (62.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 50/144 (34%), Positives = 76/144 (52%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPVIDGRRANCNLASLGA-HKTRPPTPQHGGGR--FRPAPGLVAPPAYHG-GFSSS 137
S +DGR+ + A + +++R GGR FR G G GFS
Sbjct: 67 MNGKS--VDGRQIRVDQAGKSSDNRSRGYRGGSAGGRGFFRGGRG-------RGRGFSRG 117
Query: 138 YVHQPTGQYTFPYSAYGYTGYSQD 161
+ G F + GY G S+D
Sbjct: 118 GGDRGYGGNRFESRSGGYGG-SRD 140
>UNIPROTKB|F1NCV5 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104347 OMA:QHPPADN
EMBL:AADN02009038 EMBL:AADN02009039 IPI:IPI00822447
Ensembl:ENSGALT00000038016 Uniprot:F1NCV5
Length = 338
Score = 164 (62.8 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 36/110 (32%), Positives = 55/110 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 67 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 126
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A K PP GG P Y G F
Sbjct: 127 KEHKLDGKLIDPKRAKALKGK-EPPKKVFVGG-LSPDTSEEQIKEYFGAF 174
Score = 140 (54.3 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 43/157 (27%), Positives = 66/157 (42%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + ++
Sbjct: 152 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 211
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPA--------YHGGFSS 136
I + +A R Q GG+ + G ++ GF++
Sbjct: 212 RYHQIGSGKCEIKVAQ-PKEVYRQQQQQQKGGKSNASGGRGGGRGRGRGQGQNWNQGFNN 270
Query: 137 SYVHQPTGQYTFPYSAYGYTGYSQDTMYALNYYNIYG 173
Y Q G Y YS Y+GY NY N YG
Sbjct: 271 -YYDQGYGNYNSAYSDQSYSGYGGYDYSGYNYPN-YG 305
>UNIPROTKB|F1S420 [details] [associations]
symbol:F1S420 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104347 InterPro:IPR012956 Pfam:PF08143
EMBL:CU914278 Ensembl:ENSSSCT00000015327 OMA:NHEVAGS Uniprot:F1S420
Length = 300
Score = 163 (62.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 26/56 (46%), Positives = 41/56 (73%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD
Sbjct: 77 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKD 132
>MGI|MGI:1355299 [details] [associations]
symbol:Hnrpdl "heterogeneous nuclear ribonucleoprotein
D-like" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISA] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISA] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008143 "poly(A)
RNA binding" evidence=ISO] [GO:0010468 "regulation of gene
expression" evidence=ISO] [GO:0016071 "mRNA metabolic process"
evidence=ISA] [GO:0034046 "poly(G) RNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1355299 GO:GO:0005634 GO:GO:0005737
GO:GO:0016071 GO:GO:0006355 GO:GO:0000166 GO:GO:0003677
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 eggNOG:COG0724
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 ChiTaRS:HNRPDL
EMBL:AB017020 EMBL:AK011581 EMBL:AK172629 EMBL:BC021374
IPI:IPI00129417 UniGene:Mm.389579 ProteinModelPortal:Q9Z130
SMR:Q9Z130 IntAct:Q9Z130 STRING:Q9Z130 PhosphoSite:Q9Z130
PaxDb:Q9Z130 PRIDE:Q9Z130 InParanoid:Q9Z130 Bgee:Q9Z130
CleanEx:MM_HNRPDL Genevestigator:Q9Z130 Uniprot:Q9Z130
Length = 301
Score = 163 (62.4 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 36/110 (32%), Positives = 55/110 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A K PP GG P Y G F
Sbjct: 90 KEHKLDGKLIDPKRAKALKGK-EPPKKVFVGG-LSPDTSEEQIKEYFGAF 137
Score = 137 (53.3 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 49/170 (28%), Positives = 71/170 (41%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + ++
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 174
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPA--------YHGGFSS 136
I + +A R Q GGR A G ++ GF++
Sbjct: 175 RYHQIGSGKCEIKVAQ-PKEVYRQQQQQQKGGRGAAAGGRGGARGRGRGQGQNWNQGFNN 233
Query: 137 SYVHQPTGQYTFPY------SAYG---YTGYSQDTM-YALNYYNIYGGQQ 176
Y Q G Y Y S YG YTGY+ Y Y + Y GQQ
Sbjct: 234 -YYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYAD-YSGQQ 281
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
+++VG L + D +R FE FG+I V++ D +TGRSKGYGF+TF D E A RA +
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALE 72
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 40/116 (34%), Positives = 58/116 (50%)
Query: 12 GNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 71
G P D T K V L + T DT+RR FE++G + + + D+ T S+G+ FV
Sbjct: 4 GRPPPDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 72 F---KDPEAAMRACQNPSPVIDGRRANCNLASLG----AHKTR--PPTPQHGGGRF 118
F +D E AM A V+DGR +A G +H +R PP ++GGG +
Sbjct: 62 FHDKRDAEDAMDAMDGA--VLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGGGY 115
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 157 (60.3 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 92
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 93 ARPHKVDGR 101
Score = 143 (55.4 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 106 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 163
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 164 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 196
>ZFIN|ZDB-GENE-050320-86 [details] [associations]
symbol:msi1 "musashi homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007417 "central
nervous system development" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050320-86 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007417 GO:GO:0003676 EMBL:AB698464 Uniprot:J4C3V8
Length = 349
Score = 163 (62.4 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 41/139 (29%), Positives = 69/139 (49%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YF+QFG++ +A+++ DK T R +G+GFVTF++ + +
Sbjct: 106 TRTKKIFVGGLSVNTTIEDVKQYFDQFGKVDDAMLMFDKTTNRHRGFGFVTFENEDVVEK 165
Query: 81 ACQNPSPVIDGRRANCNLAS-------LGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGG 133
C+ I+ + C A G+ + R +G F G++ P +
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKEVMSPTGSSRGRARVMPYGMDAFMLGIGMLGYPGFQAT 225
Query: 134 FSS--SYVHQPTGQ-YTFP 149
+ SY G Y FP
Sbjct: 226 TYAGRSYTSLTPGYTYQFP 244
Score = 147 (56.8 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 25/50 (50%), Positives = 40/50 (80%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
K+F+GGL+W+T ++ ++ YF +FGE+ E++V+ D T RS+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLKDYFCKFGEVKESMVMRDPVTKRSRGFGFVTFVD 70
>ZFIN|ZDB-GENE-070424-97 [details] [associations]
symbol:hnrnpd "heterogeneous nuclear
ribonucleoprotein D" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-070424-97 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:PNQNWNQ InterPro:IPR012956 Pfam:PF08143 EMBL:CR847788
IPI:IPI00512852 Ensembl:ENSDART00000101414
Ensembl:ENSDART00000123048 Uniprot:F1Q8A5
Length = 314
Score = 162 (62.1 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 34/102 (33%), Positives = 57/102 (55%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+
Sbjct: 49 NEEDEGKMFVGGLSWDTTKKDLKDYFTKFGEVVDCTLKLDPLTGRSRGFGFVLFKEAESV 108
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRP 120
+ ++G+ + A A KT+ P + G P
Sbjct: 109 EKVITQKEHKLNGKVIDPKKAK--AMKTKEPVKKIFVGGLSP 148
Score = 145 (56.1 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 48/162 (29%), Positives = 78/162 (48%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKN-TGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL+ +T + +R YF+ +GE+ E++ + +N T + +G+ F+TFK+ E + +
Sbjct: 140 KIFVGGLSPDTPEEKIREYFDAYGEV-ESIELPMENKTNKRRGFCFITFKEEEPVKKIME 198
Query: 84 NPSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG----GRFRPAPGLVAPPAYHGGFSSSY 138
I + +A S ++ + GG GR R P ++ G+ + Y
Sbjct: 199 KKYHNIGLSKCEVKVAMSKEQYQQQQQWGGRGGYTSRGRGRGGPN----QNWNQGYGN-Y 253
Query: 139 VHQPTGQY-TFPYSAYGYTGYS-QDTMYALNYYNI--YGGQQ 176
+Q G Y + Y+ GY GY D NYY Y QQ
Sbjct: 254 WNQGYGNYGNYGYNNQGYGGYGGYDYSGYNNYYGYGDYSNQQ 295
>UNIPROTKB|D4A2D2 [details] [associations]
symbol:D4A2D2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 GeneTree:ENSGT00550000074566
IPI:IPI00559583 ProteinModelPortal:D4A2D2
Ensembl:ENSRNOT00000032337 Uniprot:D4A2D2
Length = 262
Score = 159 (61.0 bits), Expect = 2.6e-10, P = 2.6e-10
Identities = 32/69 (46%), Positives = 47/69 (68%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL +ET +++R +FEQ+G + E VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLTFETTDESLRSHFEQWGTLTECVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 124 (48.7 bits), Expect = 9.7e-06, P = 9.7e-06
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
KIFVGG+ +T+ +R Y EQ+G+I ++TD+ +G+ +G+ FVTF D
Sbjct: 101 KIFVGGIKEDTEEHYLRDYSEQYGKIEVIEIMTDRGSGKKRGFAFVTFDD 150
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 146 (56.5 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 29/71 (40%), Positives = 39/71 (54%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+IFVG L W +R YF +FG ++ A VI DK TG SKGYGFV+F A +
Sbjct: 16 RIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEKIENE 75
Query: 85 PSPVIDGRRAN 95
+++G N
Sbjct: 76 QKHILEGNYLN 86
>UNIPROTKB|K7ELT6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000590347 Ensembl:ENST00000591055
Uniprot:K7ELT6
Length = 135
Score = 146 (56.5 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 32/91 (35%), Positives = 54/91 (59%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF+ D + AM A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 82 CQNPSPV-IDGRRANCNLASLGAHKTRPPTP 111
+ + R + A+ +RP +P
Sbjct: 67 MNGKVRIRVLSRSPVSRMGHPPANPSRPLSP 97
>UNIPROTKB|D4A6A2 [details] [associations]
symbol:D4A6A2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00949070
ProteinModelPortal:D4A6A2 Ensembl:ENSRNOT00000035567 Uniprot:D4A6A2
Length = 232
Score = 156 (60.0 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 29/68 (42%), Positives = 45/68 (66%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET D++R +F+++G + + VV+ D T RS+G+GFVT+ E C
Sbjct: 14 KLFIGGLSFETTDDSLREHFQKWGTLTDCVVMRDPQTKRSRGFGFVTYSCEEVDAAMCAR 73
Query: 85 PSPVIDGR 92
P V DGR
Sbjct: 74 PHKV-DGR 80
Score = 134 (52.2 bits), Expect = 3.6e-07, P = 3.6e-07
Identities = 33/103 (32%), Positives = 53/103 (51%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T KIFVGG+ +T +R YFE++G+I V+ D+ +G+ +G+ FVTF D
Sbjct: 96 PGAH--LTVKKIFVGGIKEDTGEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDD 153
Query: 75 PEAAMRACQNPSPVIDGRRANCNLA-SLGAHKTRPPTPQHGGG 116
+ + I+G NC + +L + + Q G G
Sbjct: 154 HDTVDKIVVQKYHTINGH--NCEVKKALSKQEMQSAGSQRGCG 194
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 163 (62.4 bits), Expect = 2.9e-10, P = 2.9e-10
Identities = 47/164 (28%), Positives = 72/164 (43%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + + PG ++ T K+FVGG+ +T + +R YF QFG+I E ++T+KN+ +
Sbjct: 111 KRAVSREDSSKPGAHS--TVKKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSDK 168
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGR---------RANCNLASLGAHKTRPPTPQHG 114
+G+ F+TF D +A R ++G R N S+ + R G
Sbjct: 169 RRGFAFITFDDHDAVDRIVIQKYHTVNGHNCEVRKALSREEMNRVSMNSRGGRGGGGGSG 228
Query: 115 GGRFRPAPGLVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGY 158
GG F G Y GG+ G Y GY GY
Sbjct: 229 GGNFGRGGGGGGGGGYGGGYGGGGGRGGGGGYG---GGDGYNGY 269
Score = 153 (58.9 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 33/71 (46%), Positives = 50/71 (70%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ + +AAM A
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSSVGEVDAAMDA 98
Query: 82 CQNPSPVIDGR 92
P V DGR
Sbjct: 99 --RPHKV-DGR 106
>UNIPROTKB|F1N2T0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104347
OMA:QHPPADN EMBL:DAAA02018246 IPI:IPI00697542 UniGene:Bt.23277
PRIDE:F1N2T0 Ensembl:ENSBTAT00000019699 ArrayExpress:F1N2T0
Uniprot:F1N2T0
Length = 420
Score = 163 (62.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 36/110 (32%), Positives = 55/110 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A K PP GG P Y G F
Sbjct: 209 KEHKLDGKLIDPKRAKALKGK-EPPKKVFVGG-LSPDTSEEQIKEYFGAF 256
Score = 137 (53.3 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 49/170 (28%), Positives = 71/170 (41%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPA--------YHGGFSS 136
I + +A R Q GGR A G ++ GF++
Sbjct: 294 RYHQIGSGKCEIKVAQ-PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 352
Query: 137 SYVHQPTGQYTFPY------SAYG---YTGYSQDTM-YALNYYNIYGGQQ 176
Y Q G Y Y S YG YTGY+ Y Y + Y GQQ
Sbjct: 353 -YYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYAD-YSGQQ 400
>UNIPROTKB|E2QRT0 [details] [associations]
symbol:HNRPDL "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:9987
GeneTree:ENSGT00700000104347 KO:K13044 OMA:QHPPADN
EMBL:AAEX03016723 RefSeq:XP_858404.1 Ensembl:ENSCAFT00000014224
GeneID:476976 KEGG:cfa:476976 NextBio:20852539 Uniprot:E2QRT0
Length = 420
Score = 163 (62.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 36/110 (32%), Positives = 55/110 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A K PP GG P Y G F
Sbjct: 209 KEHKLDGKLIDPKRAKALKGK-EPPKKVFVGG-LSPDTSEEQIKEYFGAF 256
Score = 137 (53.3 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 49/170 (28%), Positives = 71/170 (41%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPA--------YHGGFSS 136
I + +A R Q GGR A G ++ GF++
Sbjct: 294 RYHQIGSGKCEIKVAQ-PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 352
Query: 137 SYVHQPTGQYTFPY------SAYG---YTGYSQDTM-YALNYYNIYGGQQ 176
Y Q G Y Y S YG YTGY+ Y Y + Y GQQ
Sbjct: 353 -YYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYAD-YSGQQ 400
>UNIPROTKB|O14979 [details] [associations]
symbol:HNRPDL "Heterogeneous nuclear ribonucleoprotein
D-like" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0008143 "poly(A)
RNA binding" evidence=IDA] [GO:0034046 "poly(G) RNA binding"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=NAS]
[GO:0006396 "RNA processing" evidence=NAS] [GO:0010468 "regulation
of gene expression" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:D89678 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0006396 GO:GO:0003690 GO:GO:0003697
GO:GO:0010468 GO:GO:0034046 eggNOG:COG0724 GO:GO:0008143
HOGENOM:HOG000234441 HOVERGEN:HBG002295 HSSP:Q14103 CTD:9987
KO:K13044 EMBL:AB017019 EMBL:D89092 EMBL:AB066484 EMBL:CR407623
EMBL:AC124016 EMBL:AB017018 EMBL:BC007392 EMBL:BC011714
EMBL:BC071944 EMBL:AY453824 IPI:IPI00011274 IPI:IPI00045498
IPI:IPI00845282 PIR:JW0079 RefSeq:NP_001193929.1 RefSeq:NP_112740.1
UniGene:Hs.527105 UniGene:Hs.731516 ProteinModelPortal:O14979
SMR:O14979 IntAct:O14979 STRING:O14979 PhosphoSite:O14979
PaxDb:O14979 PRIDE:O14979 DNASU:9987 Ensembl:ENST00000295470
Ensembl:ENST00000349655 Ensembl:ENST00000502762 GeneID:9987
KEGG:hsa:9987 UCSC:uc003hmr.3 GeneCards:GC04M083343 HGNC:HGNC:5037
MIM:607137 neXtProt:NX_O14979 PharmGKB:PA29362 InParanoid:O14979
OMA:QHPPADN OrthoDB:EOG49W2FZ PhylomeDB:O14979 ChiTaRS:HNRPDL
GenomeRNAi:9987 NextBio:37714 ArrayExpress:O14979 Bgee:O14979
CleanEx:HS_HNRPDL Genevestigator:O14979 Uniprot:O14979
Length = 420
Score = 163 (62.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 36/110 (32%), Positives = 55/110 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A K PP GG P Y G F
Sbjct: 209 KEHKLDGKLIDPKRAKALKGK-EPPKKVFVGG-LSPDTSEEQIKEYFGAF 256
Score = 137 (53.3 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 49/170 (28%), Positives = 71/170 (41%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + ++
Sbjct: 234 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 293
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPA--------YHGGFSS 136
I + +A R Q GGR A G ++ GF++
Sbjct: 294 RYHQIGSGKCEIKVAQ-PKEVYRQQQQQQKGGRGAAAGGRGGTRGRGRGQGQNWNQGFNN 352
Query: 137 SYVHQPTGQYTFPY------SAYG---YTGYSQDTM-YALNYYNIYGGQQ 176
Y Q G Y Y S YG YTGY+ Y Y + Y GQQ
Sbjct: 353 -YYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYAD-YSGQQ 400
>ZFIN|ZDB-GENE-050306-36 [details] [associations]
symbol:zgc:110796 "zgc:110796" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050306-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG107480 KO:K14411
GeneTree:ENSGT00390000002308 EMBL:CABZ01074485 EMBL:BC090772
IPI:IPI00555445 RefSeq:NP_001013351.1 UniGene:Dr.87721 SMR:Q5CZN9
STRING:Q5CZN9 Ensembl:ENSDART00000060532 GeneID:503755
KEGG:dre:503755 eggNOG:NOG285314 InParanoid:Q5CZN9 OMA:MEADGTQ
OrthoDB:EOG4GHZQT NextBio:20866299 Uniprot:Q5CZN9
Length = 94
Score = 145 (56.1 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 24/50 (48%), Positives = 39/50 (78%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
K+F+GGL+W+T ++ ++ YF +FGE+ E +V+ D T RS+G+GFVT+ D
Sbjct: 23 KMFIGGLSWQTTQEGLKEYFCKFGEVKECMVMRDPVTKRSRGFGFVTYVD 72
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 144 (55.7 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 32/88 (36%), Positives = 46/88 (52%)
Query: 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRA 81
+ KIFV L W ++ ++ +F QFG I + V+ D+ T RSKG+GFV F+ E+ A
Sbjct: 2 SLNKIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNA 61
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPP 109
N I+GR+ N A K P
Sbjct: 62 I-NSDNEINGRKLVVNEALAKDFKENTP 88
>UNIPROTKB|F8VTQ5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022641
ProteinModelPortal:F8VTQ5 SMR:F8VTQ5 PRIDE:F8VTQ5
Ensembl:ENST00000551702 ArrayExpress:F8VTQ5 Bgee:F8VTQ5
Uniprot:F8VTQ5
Length = 145
Score = 144 (55.7 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 30/89 (33%), Positives = 50/89 (56%)
Query: 10 VGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGF 69
V PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+ +G+ F
Sbjct: 44 VDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAF 101
Query: 70 VTFKDPEAAMRACQNPSPVIDGRRANCNL 98
VTF D ++ + ++G NC +
Sbjct: 102 VTFDDHDSVDKIVIQKYHTVNGH--NCEV 128
>UNIPROTKB|Q5ZIH1 [details] [associations]
symbol:HNRNPD "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0043488 GO:GO:0042162
eggNOG:COG0724 HOGENOM:HOG000234441 HOVERGEN:HBG002295
UniGene:Gga.4605 GeneTree:ENSGT00700000104347 KO:K13044
OrthoDB:EOG49W2FZ CTD:3184 OMA:PNQNWNQ EMBL:AADN02009040
EMBL:AJ720813 IPI:IPI00597667 RefSeq:NP_001026314.1 SMR:Q5ZIH1
STRING:Q5ZIH1 Ensembl:ENSGALT00000018234 GeneID:422602
KEGG:gga:422602 InParanoid:Q5ZIH1 NextBio:20825212 Uniprot:Q5ZIH1
Length = 257
Score = 157 (60.3 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 34/109 (31%), Positives = 57/109 (52%)
Query: 26 IFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85
+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQK 60
Query: 86 SPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y G F
Sbjct: 61 EHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGAF 107
Score = 157 (60.3 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 50/159 (31%), Positives = 75/159 (47%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 85 KIFVGGLSPDTPEEKIREYFGAFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 144
Query: 85 PSPVIDGRRANCNLA-SLGAHKTRPPTPQHGG--GRFRPAPGLVAPPA-YHGGFSSSYVH 140
+ + +A S ++ + GG GR R G P ++ G+S+ Y +
Sbjct: 145 KYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFVGRARGRGG--GPSQNWNQGYSN-YWN 201
Query: 141 QPTGQYTFPYSAYG-YTGYSQDTMYALNYYNI--YGGQQ 176
Q G Y + YG Y GY T Y NYY Y QQ
Sbjct: 202 QGYGNYGYNSQGYGGYGGYDY-TGYN-NYYGYSDYSNQQ 238
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 148 (57.2 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 42/127 (33%), Positives = 65/127 (51%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ- 83
K+F+GGL ET + YF +FG I E +++ D+ T +S+G+ FVT+++P A A +
Sbjct: 9 KLFIGGLNTETSEKVLEAYFSKFGRISEVLLMKDRETNKSRGFAFVTYENPGDAKDAARE 68
Query: 84 -NPSPVIDGRRANCNLASLGAHKTR----PPTPQ-HGGGR----FRPAP-GLVAPPA--- 129
N P +DG+ A+ +T PP P+ G R R P G+ PP+
Sbjct: 69 MNGKP-LDGKPIKVEQATKPQFETSGRRGPPPPRSRGPSRGLRGSRGGPSGMRGPPSREP 127
Query: 130 YHGGFSS 136
+ G SS
Sbjct: 128 FFKGMSS 134
Score = 49 (22.3 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 130 YHGGFSS-SYVHQPT-GQYTFPYSAYG 154
Y GG Y+ +P+ G Y PY YG
Sbjct: 251 YGGGREPRGYIDRPSAGSYRDPYDGYG 277
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 159 (61.0 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 31/69 (44%), Positives = 49/69 (71%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
+P +DGR
Sbjct: 74 TTPHKVDGR 82
Score = 141 (54.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + + G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVKGH--NCEV 177
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 157 (60.3 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 145 (56.1 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 53/189 (28%), Positives = 86/189 (45%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDG-----RRA--NCNLASLGA-HKTRPPTPQHGG 115
+G+ FVTF D ++ + ++G R+A +AS + + R + GG
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALSKQEMASASSSQRGRSGSGNFGG 204
Query: 116 GR---FRPAPGLVAPPAY--HGGFSSSYVHQPTGQYTFPYSAYGYTGYSQDTMYA-LNYY 169
GR F + GGF S G + S GY G+ D Y +
Sbjct: 205 GRGGGFGGNDNFGRGGNFSGRGGFGGS-----RGGGGYGGSGDGYNGFGNDGGYGGSSSS 259
Query: 170 NIYG-GQQF 177
+ YG G++F
Sbjct: 260 SSYGSGRRF 268
>TAIR|locus:2206850 [details] [associations]
symbol:AT1G73530 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P09651 EMBL:AC012396
EMBL:BT021981 EMBL:BT028910 IPI:IPI00543837 PIR:A96762
RefSeq:NP_177494.1 UniGene:At.34984 ProteinModelPortal:Q9FX45
SMR:Q9FX45 STRING:Q9FX45 PRIDE:Q9FX45 EnsemblPlants:AT1G73530.1
GeneID:843687 KEGG:ath:AT1G73530 TAIR:At1g73530 eggNOG:NOG302687
HOGENOM:HOG000152583 InParanoid:Q9FX45 OMA:FRTTEDT PhylomeDB:Q9FX45
ProtClustDB:CLSN2914346 Genevestigator:Q9FX45 Uniprot:Q9FX45
Length = 181
Score = 143 (55.4 bits), Expect = 6.2e-10, P = 6.2e-10
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
TK++V GL++ T DT+R FEQFG ++ ++ DK R KG+ F+ ++ E AM+A Q
Sbjct: 77 TKLYVSGLSFRTTEDTLRDTFEQFGNLIHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 84 NP-SPVIDGR 92
+DGR
Sbjct: 137 GMHGKFLDGR 146
>WB|WBGene00001999 [details] [associations]
symbol:hrp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040015 "negative regulation of
multicellular organism growth" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0000781 "chromosome, telomeric region" evidence=IDA]
[GO:0031581 "hemidesmosome assembly" evidence=IGI] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0030529
GO:GO:0040015 GO:GO:0000398 GO:GO:0000781 eggNOG:COG0724
GO:GO:0031581 GeneTree:ENSGT00700000104255 KO:K12741 EMBL:D10877
EMBL:FO081370 PIR:S35500 RefSeq:NP_001023199.1
RefSeq:NP_001040944.1 RefSeq:NP_001040945.1 RefSeq:NP_500326.2
UniGene:Cel.7537 ProteinModelPortal:Q22037 SMR:Q22037 IntAct:Q22037
STRING:Q22037 PaxDb:Q22037 PRIDE:Q22037 EnsemblMetazoa:F42A6.7a.1
EnsemblMetazoa:F42A6.7a.2 GeneID:177101 KEGG:cel:CELE_F42A6.7
UCSC:F42A6.7a.1 CTD:177101 WormBase:F42A6.7a WormBase:F42A6.7b
WormBase:F42A6.7c WormBase:F42A6.7d InParanoid:Q22037 OMA:YGGGWGQ
NextBio:895332 Uniprot:Q22037
Length = 346
Score = 159 (61.0 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 35/71 (49%), Positives = 47/71 (66%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAMRA 81
KIFVGGL T D MR ++ QFGEI + +V+ D T RS+G+GFVTF + +AAM+
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMK- 82
Query: 82 CQNPSPVIDGR 92
Q P +IDG+
Sbjct: 83 -QRPH-IIDGK 91
Score = 119 (46.9 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 38/145 (26%), Positives = 62/145 (42%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+++V G+ + D + YF ++G + ++ +I DK T + +G+GFVTF D ++ +
Sbjct: 115 RLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVTFDDHDSVDQCVLQ 174
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHG------GGRFRPAP--GLVAPPAYHGGFSS 136
S +++G R C++ G K Q GGR R G GG+
Sbjct: 175 KSHMVNGHR--CDVRK-GLSKDEMSKAQMNRDRETRGGRSRDGQRGGYNGGGGGGGGWGG 231
Query: 137 SYVHQPTGQYTFPYSAYGYTGYSQD 161
G Y P G GY D
Sbjct: 232 PAQRGGPGAYGGPGGG-GQGGYGGD 255
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 152 (58.6 bits), Expect = 7.9e-10, P = 7.9e-10
Identities = 39/104 (37%), Positives = 56/104 (53%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM--RAC 82
K+F+GGL+++T ++ F ++G I + VI D+ T RS+G+GFVTF++PE A A
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 83 QNPSPVIDGRRANCNLASL-GAHKTRPPTPQHGGGR--FRPAPG 123
N V DGR + A G GGGR FR + G
Sbjct: 84 MNGKQV-DGRMIRVDEAGKSGGRSGGFRGGSRGGGRGFFRGSRG 126
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 142 (55.0 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 25/57 (43%), Positives = 42/57 (73%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRA 81
K+FVGGL+++T ++ + F ++G+I E VV+ D+ T RS+G+GFVTF++ + A A
Sbjct: 7 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDA 63
>UNIPROTKB|E2RK48 [details] [associations]
symbol:MSI1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14411
GeneTree:ENSGT00700000104255 CTD:4440 EMBL:AAEX03014735
RefSeq:XP_854252.2 Ensembl:ENSCAFT00000016345 GeneID:611488
KEGG:cfa:611488 Uniprot:E2RK48
Length = 362
Score = 159 (61.0 bits), Expect = 8.2e-10, P = 8.2e-10
Identities = 45/151 (29%), Positives = 72/151 (47%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQF ++ +A+++ DK T R +G+GFVTF+ + +
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFEKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSYVH 140
C+ I+ + C A + PT GR R P A+ G +
Sbjct: 166 VCEIHFHEINNKMVECKKAQ--PKEVMSPTGS-ARGRSRVMP--YGMDAFMLGIGM--LG 218
Query: 141 QPTGQYTFPYSAYGYTGYSQDTMYALNYYNI 171
P Q T Y++ YTG + Y + +
Sbjct: 219 YPGFQAT-TYASRSYTGLAPGYTYQFPEFRV 248
Score = 158 (60.7 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
K+F+GGL+W+T ++ +R YF QFGE+ E +V+ D T RS+G+GFVTF D
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMD 70
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 157 (60.3 bits), Expect = 9.8e-10, P = 9.8e-10
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 157 (60.3 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 157 (60.3 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 147 (56.8 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 42/158 (26%), Positives = 69/158 (43%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPG 123
+G+ FVTF D ++ + ++G NC + A + R R G
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEVRK--ALSKQEMASASSSQRGRSGSG 200
Query: 124 LVAPPAYHGGFSSSYVHQPTGQYTFPYSAYGYTGYSQD 161
GGF + G ++ GY G+ D
Sbjct: 201 NFGG-GRGGGFGGNDNFGRGGNFSGRGIGDGYNGFGND 237
>UNIPROTKB|F1LM82 [details] [associations]
symbol:Hnrnpa2b1 "Heterogeneous nuclear ribonucleoproteins
A2/B1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310403 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662 Pfam:PF11627
GeneTree:ENSGT00700000104376 IPI:IPI00923129
Ensembl:ENSRNOT00000015325 ArrayExpress:F1LM82 Uniprot:F1LM82
Length = 312
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/73 (45%), Positives = 51/73 (69%)
Query: 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK---DPEAAM 79
F K+F+GGL++ET +++R Y+EQ+G++ + VV+ D + RS+G+GFVTF + +AAM
Sbjct: 19 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAM 78
Query: 80 RACQNPSPVIDGR 92
A P IDGR
Sbjct: 79 AA--RPHS-IDGR 88
Score = 152 (58.6 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 45/162 (27%), Positives = 70/162 (43%)
Query: 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
PG + T K+FVGG+ +T+ +R YFE++G+I +ITD+ +G+ +G+GFVTF D
Sbjct: 104 PGAH--VTVKKLFVGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDD 161
Query: 75 PEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHG-GGRFRPAPGLVAPPAYHGG 133
+ + I+G A A + + G GG F + G
Sbjct: 162 HDPVDKIVLQKYHTINGHNAEVRKALSRQEMQEVQSSRSGRGGNFGFGDSRGGGGNFGPG 221
Query: 134 FSSSYVHQPTGQYTFPYSAYGYTGYSQDT--MYALNYYNIYG 173
S++ G + GY GY Y YN +G
Sbjct: 222 PGSNFRGGSDGYGSGRGFGDGYNGYGGGPGGNYGSGNYNDFG 263
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 151 (58.2 bits), Expect = 7.4e-09, P = 7.4e-09
Identities = 38/122 (31%), Positives = 64/122 (52%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDG-----RRANCN--LASLGA-HKTRPPTPQHGG 115
+G+ FVTF D ++ + ++G R+A C +AS + + R + GG
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKALCKQEMASASSSQRGRSGSGNFGG 204
Query: 116 GR 117
GR
Sbjct: 205 GR 206
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 157 (60.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEK-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 141 (54.7 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 30/95 (31%), Positives = 51/95 (53%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D + + ++G NC +
Sbjct: 145 KRGFAFVTFDDHNSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 157 (60.3 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F1NDD0 [details] [associations]
symbol:F1NDD0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IEA] [GO:0045948 "positive regulation of translational
initiation" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007126
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0008494
GO:GO:0045948 GeneTree:ENSGT00530000063480 OMA:YQAPAQC
EMBL:AADN02019816 EMBL:AADN02019817 IPI:IPI00575003
ProteinModelPortal:F1NDD0 Ensembl:ENSGALT00000013174 Uniprot:F1NDD0
Length = 307
Score = 156 (60.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 41/130 (31%), Positives = 66/130 (50%)
Query: 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEA 77
+ T +IFVGG+ ++T + +R++F Q+G + E ++ D+ G SKGYGF+TF+ E
Sbjct: 33 FGTVTPNRIFVGGIDFKTNENDLRKFFAQYGCVREVKIVNDR-AGISKGYGFITFETQED 91
Query: 78 AMRACQNPSPV-IDGRRANCNLASLGAHKTRPPTP---QHGGGRF-RPAPGLVAPPAYHG 132
A + Q + ++ N A + +TR P Q GG + + G P YH
Sbjct: 92 AQKILQEAKKLNYKDKKLNIGPA-IRKQQTRMPRSNVIQEGGTMYLTTSSGY--PYIYHN 148
Query: 133 GFSSSYVHQP 142
G + Y H P
Sbjct: 149 GVA--YFHTP 156
>DICTYBASE|DDB_G0279695 [details] [associations]
symbol:DDB_G0279695 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0279695 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000032 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_641604.1
ProteinModelPortal:Q54WE9 PRIDE:Q54WE9 EnsemblProtists:DDB0233747
GeneID:8622181 KEGG:ddi:DDB_G0279695 InParanoid:Q54WE9 OMA:HEMDGRQ
Uniprot:Q54WE9
Length = 84
Score = 140 (54.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 29/75 (38%), Positives = 45/75 (60%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+IFV + W + ++ +F +FG + + V+ D+ T RSKG+GFVTF + E+A A N
Sbjct: 4 RIFVARIPWSICKIALKTHFSKFGPVSDGYVVLDRITKRSKGFGFVTFDNAESAQNAV-N 62
Query: 85 PSPVIDGRRANCNLA 99
+DGR+ NLA
Sbjct: 63 SVHEMDGRQLVVNLA 77
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 140 (54.3 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 26 IFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRAC-QN 84
+FV G+++ + +T+ + F Q+G++L+ VI DK R KG+ +VTF E A +A +
Sbjct: 23 LFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSSKEEAEKALLEL 82
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGG 116
+ ++DGR + H P H GG
Sbjct: 83 NAQLVDGRVVILDTTKAAKHNPPDTKPNHAGG 114
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 152 (58.6 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 30/69 (43%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 66
Query: 85 PSP-VIDGR 92
P ++GR
Sbjct: 67 ARPHKVNGR 75
Score = 144 (55.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 35/117 (29%), Positives = 61/117 (52%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFG--EILEAVVITDKNT 61
+R + P Y T KIFVGG+ +T+ +R YF Q+G E++E ++TD+ +
Sbjct: 80 KRAVSREDSQRPDAY--LTVKKIFVGGIKEDTEEHHLRDYFGQYGKTEVIE--IVTDRGS 135
Query: 62 GRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAHKT-RPPTPQHGGGR 117
G+ +G+ FVTF D ++ + ++G NC + +++ R + GGGR
Sbjct: 136 GKKRGFAFVTFDDRDSVDKIVIQKYHTVNGH--NCEVRKAPSNQRGRSGSGNFGGGR 190
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 157 (60.3 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 157 (60.3 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 157 (60.3 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 73
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 74 ARPHKVDGR 82
Score = 143 (55.4 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 87 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 144
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 145 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 177
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 157 (60.3 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 31/69 (44%), Positives = 48/69 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL++ET +++R +FEQ+G + + VV+ D NT RS+G+GFVT+ E + A N
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEE-VDAAMN 94
Query: 85 PSP-VIDGR 92
P +DGR
Sbjct: 95 ARPHKVDGR 103
Score = 143 (55.4 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 30/95 (31%), Positives = 52/95 (54%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 108 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 165
Query: 64 SKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98
+G+ FVTF D ++ + ++G NC +
Sbjct: 166 KRGFAFVTFDDHDSVDKIVIQKYHTVNGH--NCEV 198
>UNIPROTKB|F8VYN5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000380 EMBL:AC078778 HGNC:HGNC:5031
ChiTaRS:HNRNPA1 IPI:IPI00644968 ProteinModelPortal:F8VYN5
SMR:F8VYN5 PRIDE:F8VYN5 Ensembl:ENST00000550994 ArrayExpress:F8VYN5
Bgee:F8VYN5 Uniprot:F8VYN5
Length = 113
Score = 139 (54.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 4 QRPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR 63
+R + PG + T KIFVGG+ +T+ +R YFEQ+G+I ++TD+ +G+
Sbjct: 42 KRAVSREDSQRPGAH--LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 99
Query: 64 SKGYGFVTFKDPEA 77
+G+ FVTF D ++
Sbjct: 100 KRGFAFVTFDDHDS 113
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 139 (54.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 40/114 (35%), Positives = 53/114 (46%)
Query: 12 GNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVT 71
G P D T K V L + T DT+RR FE++G + + + D+ T S+G+ FV
Sbjct: 4 GRPPPDVEGMTSLK--VDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVR 61
Query: 72 F---KDPEAAMRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAP 122
F +D E AM A V+DGR +A G RPP H R P P
Sbjct: 62 FHDKRDAEDAMDAMDGA--VLDGRELRVQMARYG----RPPDSHHS--RRGPPP 107
WARNING: HSPs involving 602 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.136 0.431 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 278 234 0.00087 113 3 11 22 0.42 33
32 0.43 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 852
No. of states in DFA: 600 (64 KB)
Total size of DFA: 196 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.66u 0.08s 20.74t Elapsed: 00:00:02
Total cpu time: 20.69u 0.09s 20.78t Elapsed: 00:00:02
Start: Fri May 10 14:47:22 2013 End: Fri May 10 14:47:24 2013
WARNINGS ISSUED: 2