BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023688
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9H0Z9|RBM38_HUMAN RNA-binding protein 38 OS=Homo sapiens GN=RBM38 PE=1 SV=2
Length = 239
Score = 132 bits (331), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 75/100 (75%), Gaps = 1/100 (1%)
Query: 5 RPLQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRS 64
RPL G H G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S
Sbjct: 16 RPLAAPGAMH-GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKS 74
Query: 65 KGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAH 104
+GYGFVT D AA RAC++P+P+IDGR+AN NLA LGA
Sbjct: 75 RGYGFVTMADRAAAERACKDPNPIIDGRKANVNLAYLGAK 114
>sp|Q9I8B3|RB24B_XENLA RNA-binding protein 24-B OS=Xenopus laevis GN=rbm24-b PE=2 SV=1
Length = 224
Score = 126 bits (316), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 84/126 (66%), Gaps = 4/126 (3%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP---AYHGGFS 135
RAC++P+P+IDGR+AN NLA LGA K R P G + P LV P H +
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALVQRPYGIPAHYVYP 124
Query: 136 SSYVHQ 141
+YV Q
Sbjct: 125 QAYVQQ 130
>sp|Q5ZJX4|RBM38_CHICK RNA-binding protein 38 OS=Gallus gallus GN=RBM38 PE=2 SV=1
Length = 215
Score = 125 bits (313), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 6 KDTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGA 103
RAC++P+P+IDGR+AN NLA LGA
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGA 90
>sp|Q9BX46|RBM24_HUMAN RNA-binding protein 24 OS=Homo sapiens GN=RBM24 PE=1 SV=1
Length = 236
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTT+TKIFVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP 128
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRP 114
>sp|Q6DIV4|RBM38_XENTR RNA-binding protein 38 OS=Xenopus tropicalis GN=rbm38 PE=2 SV=1
Length = 219
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTGKSRGYGFVTMSDRAAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGA 103
RAC++P+P+IDGR+AN NLA LGA
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGA 90
>sp|Q76LC6|RBM24_DANRE RNA-binding protein 24 OS=Danio rerio GN=rbm24 PE=2 SV=1
Length = 230
Score = 124 bits (312), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/85 (65%), Positives = 69/85 (81%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTT+TKIFVGGL + T ++R+YFE FGEI EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGA 103
RAC++P+P+IDGR+AN NLA LGA
Sbjct: 66 DRACKDPNPIIDGRKANVNLAYLGA 90
>sp|Q6P8A7|RBM24_XENTR RNA-binding protein 24 OS=Xenopus tropicalis GN=rbm24 PE=2 SV=1
Length = 226
Score = 124 bits (311), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP 128
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALIQRP 114
>sp|Q6GQD3|RB24A_XENLA RNA-binding protein 24-A OS=Xenopus laevis GN=rbm24-a PE=2 SV=1
Length = 225
Score = 124 bits (311), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP 128
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQIHPALIQRP 114
>sp|D3Z4I3|RBM24_MOUSE RNA-binding protein 24 OS=Mus musculus GN=Rbm24 PE=3 SV=1
Length = 236
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 6 KDTTYTKIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPP 128
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRP 114
>sp|Q7T3I7|RBM38_XENLA RNA-binding protein 38 OS=Xenopus laevis GN=rbm38 PE=1 SV=2
Length = 214
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 55/85 (64%), Positives = 68/85 (80%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ T +S+GYGFVT D AA
Sbjct: 6 KDTTFTKIFVGGLPYHTTDASLRKYFEVFGDIDEAVVITDRQTAKSRGYGFVTMSDRAAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGA 103
RAC++P+P+IDGR+AN NLA LGA
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGA 90
>sp|Q5ZMA3|RBM24_CHICK RNA-binding protein 24 OS=Gallus gallus GN=RBM24 PE=2 SV=2
Length = 225
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 83/122 (68%), Gaps = 4/122 (3%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
DTT+TKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D AA
Sbjct: 6 KDTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 65
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSSSY 138
RAC++P+P+IDGR+AN NLA LGA K R P G + P L+ P G + Y
Sbjct: 66 ERACKDPNPIIDGRKANVNLAYLGA-KPRIMQPGFAFGVQQLHPALIQRPF---GIPAHY 121
Query: 139 VH 140
V+
Sbjct: 122 VY 123
>sp|Q62176|RBM38_MOUSE RNA-binding protein 38 OS=Mus musculus GN=Rbm38 PE=1 SV=2
Length = 237
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 70/89 (78%)
Query: 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 75
G DTTFTKIFVGGL + T ++R+YFE FG+I EAVVITD+ TG+S+GYGFVT D
Sbjct: 24 GSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADR 83
Query: 76 EAAMRACQNPSPVIDGRRANCNLASLGAH 104
AA RAC++P+P+IDGR+AN NLA LGA
Sbjct: 84 AAADRACKDPNPIIDGRKANVNLAYLGAK 112
>sp|P48809|RB27C_DROME Heterogeneous nuclear ribonucleoprotein 27C OS=Drosophila
melanogaster GN=Hrb27C PE=1 SV=2
Length = 421
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 58/95 (61%), Gaps = 10/95 (10%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+WET ++ + RYF +FG+I++ VV+ + +GRS+G+GFVTF DP QN
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQN 67
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRPPTPQHGGG 116
+DGR + CN +L P+ GGG
Sbjct: 68 GPHTLDGRTIDPKPCNPRTL-------QKPKKGGG 95
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL +R +F ++G++ E V++ D+ +S+G+GF++F++ +
Sbjct: 97 KVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEH---- 152
Query: 85 PSPVIDGRRANCNLASLGAHKTRP 108
V + R N N + K P
Sbjct: 153 ---VTNERYINLNGKQVEIKKAEP 173
>sp|O94432|YHKF_SCHPO Uncharacterized RNA-binding protein C660.15 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC660.15 PE=4 SV=1
Length = 474
Score = 81.6 bits (200), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP----EAAMR 80
K+F+GGL WET D++R YFEQFGE+L+ V+ D TGRS+G+GF+TFK+P E +
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK 223
Query: 81 ACQNPSPVIDGRRA 94
+ID +RA
Sbjct: 224 EHHLDGKIIDPKRA 237
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 44/76 (57%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGG+ + + R +F QFG +L+A ++ DK+TGR +G+GFVT+++ A
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 85 PSPVIDGRRANCNLAS 100
P I G+ A+
Sbjct: 308 PYITIHGKPVEVKRAT 323
>sp|Q9JII5|DAZP1_MOUSE DAZ-associated protein 1 OS=Mus musculus GN=Dazap1 PE=2 SV=2
Length = 406
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRP 108
+DGR + C + +TRP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 9/130 (6%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGG+ +R YF++FG + E V+I D R +G+GF+TF+D ++ +A
Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN 172
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRF--RPAPGLV------APPAYHGGFS 135
I G++ A K + P Q G ++ R AP PP + G+
Sbjct: 173 MHFHDIMGKKVEVKRAEPRDSKNQAPG-QPGASQWGSRVAPSAANGWAGQPPPTWQQGYG 231
Query: 136 SSYVHQPTGQ 145
+ P GQ
Sbjct: 232 PQGMWVPAGQ 241
>sp|Q96EP5|DAZP1_HUMAN DAZ-associated protein 1 OS=Homo sapiens GN=DAZAP1 PE=1 SV=1
Length = 407
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/87 (40%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRP 108
+DGR + C + +TRP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERTRP 97
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
+++ KIFVGG+ +R YF++FG + E V+I D R +G+GF+TF+D ++
Sbjct: 108 DNSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 167
Query: 79 MRACQNPSPVIDGRRANCNLASLGAHKTRP---PTPQHGGGRFRP--APGLVA--PPAYH 131
+A I G++ A K++ P G R P A G PP +
Sbjct: 168 DQAVNMHFHDIMGKKVEVKRAEPRDSKSQAPGQPGASQWGSRVVPNAANGWAGQPPPTWQ 227
Query: 132 GGFSSSYVHQPTGQ 145
G+ + P GQ
Sbjct: 228 QGYGPQGMWVPAGQ 241
>sp|Q98SJ2|DAZP1_XENLA DAZ-associated protein 1 OS=Xenopus laevis GN=dazap1 PE=1 SV=1
Length = 360
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/87 (39%), Positives = 53/87 (60%), Gaps = 3/87 (3%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL W T ++T+R YF Q+GE+++ V++ DK T +S+G+GFV FKDP +
Sbjct: 11 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS 70
Query: 85 PSPVIDGRRAN---CNLASLGAHKTRP 108
+DGR + C + ++RP
Sbjct: 71 RPHTLDGRNIDPKPCTPRGMQPERSRP 97
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGG+ ++ YF +FG + E V+I D R +G+GF+TF+D ++ +A
Sbjct: 115 KIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNM 174
Query: 85 PSPVIDGRRANCNLASLGAHKTR---PPTPQHGGGRFRP--APGLVA-PPAYHGGFSSSY 138
I G++ A K++ PP G R A G PP G+S
Sbjct: 175 HFHDIMGKKVEVKRAEPRDSKSQTPGPPGSNQWGSRAMQSTANGWTGQPPQTWQGYSPQG 234
Query: 139 VHQPTGQ 145
+ PTGQ
Sbjct: 235 MWMPTGQ 241
>sp|Q8W034|RNP1_ARATH Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana
GN=RNP1 PE=1 SV=1
Length = 411
Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAM 79
D+ K+FVGG++WET D +R +F +GE+ +A+V+ DK TGR +G+GFV F DP
Sbjct: 2 DSDQGKLFVGGISWETDEDKLREHFTNYGEVSQAIVMRDKLTGRPRGFGFVIFSDPSVLD 61
Query: 80 RACQNPSPVIDGRRANCNLA 99
R Q ID R + A
Sbjct: 62 RVLQEKHS-IDTREVDVKRA 80
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEA 77
YN T KIFVGGL + R+YFE +G + + ++ D+ T R +G+GFV+F +A
Sbjct: 106 YNKTK--KIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFGFVSFDSEDA 163
Query: 78 AMRACQNPSPVIDGRRANCNLA 99
+ G++ A
Sbjct: 164 VDSVLHKTFHDLSGKQVEVKRA 185
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2
PE=1 SV=1
Length = 346
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 16 GDYNDTTFT--KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 73
G ND+ K+F+GGL+W+T D++R YF +FGEI E +V+ D T RS+G+GFVTF
Sbjct: 11 GSANDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFA 70
Query: 74 DPEAAMRACQNPSPVIDGRRANCNLA 99
DP + + P +D + + +A
Sbjct: 71 DPASVDKVLGQPHHELDSKTIDPKVA 96
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF++ + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 81 ACQNPSPVIDGRRANCNLA 99
C+ I+ + C A
Sbjct: 167 VCEIHFHEINNKMVECKKA 185
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2
PE=1 SV=1
Length = 328
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T D++R YF +FGEI E +V+ D T RS+G+GFVTF DP + +
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQ 81
Query: 85 PSPVIDGRRANCNLA 99
P +D + + +A
Sbjct: 82 PHHELDSKTIDPKVA 96
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 50/79 (63%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF++ + +
Sbjct: 107 TRTKKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEK 166
Query: 81 ACQNPSPVIDGRRANCNLA 99
C+ I+ + C A
Sbjct: 167 VCEIHFHEINNKMVECKKA 185
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 74.7 bits (182), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T +T+ + F FG+++++ VITD+ TGRS+G+GFVTF ++ + A +N
Sbjct: 9 RCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIEN 68
Query: 85 PS-PVIDGRRANCNLA 99
+ +DGR N A
Sbjct: 69 MNGKELDGRNITVNQA 84
>sp|Q99020|ROAA_MOUSE Heterogeneous nuclear ribonucleoprotein A/B OS=Mus musculus
GN=Hnrnpab PE=1 SV=1
Length = 285
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 70 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDSSSV 129
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 130 EKVLDQKEHRLDGR 143
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL E + +R YF QFGEI + D + +G+ F+TFK+ + + +
Sbjct: 160 KIFVGGLNPEATEEKIREYFGQFGEIEAIELPIDPKLNKRRGFVFITFKEEDPVKKVLEK 219
Query: 85 PSPVIDGRRANCNLA 99
+ G + +A
Sbjct: 220 KFHTVSGSKCEIKVA 234
>sp|Q99729|ROAA_HUMAN Heterogeneous nuclear ribonucleoprotein A/B OS=Homo sapiens
GN=HNRNPAB PE=1 SV=2
Length = 332
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 47/74 (63%)
Query: 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA 78
N+ K+FVGGL+W+T + ++ YF +FGE+++ + D NTGRS+G+GF+ FKD +
Sbjct: 64 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASV 123
Query: 79 MRACQNPSPVIDGR 92
+ +DGR
Sbjct: 124 EKVLDQKEHRLDGR 137
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 24 TKIFVGGLAWET-QRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRAC 82
KIFVGGL E+ + +R YF +FGEI + D + +G+ F+TFK+ E +
Sbjct: 153 KKIFVGGLNPESPTEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVL 212
Query: 83 QNPSPVIDGRRANCNLA 99
+ + G + +A
Sbjct: 213 EKKFHTVSGSKCEIKVA 229
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T + ++R F QFG+++++ +I D+ +GRS+G+GFVTFKD +A A +
Sbjct: 7 RCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEE 66
Query: 85 PS-PVIDGRRANCNLA 99
+ +DGR N A
Sbjct: 67 MNGKELDGRVITVNEA 82
>sp|Q9VVE5|MSIR6_DROME RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster
GN=Rbp6 PE=2 SV=3
Length = 369
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 52/75 (69%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T +++R YF ++G+I EA+V+ D T RS+G+GFVTF DP + +
Sbjct: 30 KMFIGGLSWQTSPESLRDYFGRYGDISEAMVMKDPTTRRSRGFGFVTFSDPNSVDKVLTQ 89
Query: 85 PSPVIDGRRANCNLA 99
+ +DG++ + +A
Sbjct: 90 GTHELDGKKVDPKVA 104
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T KIFVGGL+ T + ++ YFEQFG I +A+++ DK T R +G+GFVTF+ + +
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174
Query: 81 ACQNPSPVIDGRRANCNLA 99
C+ I+ + C A
Sbjct: 175 VCEIHFHEINNKMVECKKA 193
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T +++ F +GEIL++ VITD+ TGRS+G+GFVTF + + A +N
Sbjct: 9 RCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIEN 68
Query: 85 PS-PVIDGRRANCNLA 99
+ +DGR N A
Sbjct: 69 MNGKELDGRNITVNQA 84
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
TK+F+GGL+W T ++R F FG++++A VI D+ TGRS+G+GFV F D AA A
Sbjct: 35 TKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAIS 94
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQ 112
+DG+ N + RP P+
Sbjct: 95 E----MDGKELNGRHIRVNPANDRPSAPR 119
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
+K+FVGGL+W T ++++ F FGE+ EA VI D+ TGRS+G+GFV+F ++A A +
Sbjct: 35 SKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIK 94
Query: 84 NPS-PVIDGRRANCNLAS 100
++GR+ NLA+
Sbjct: 95 EMDGKELNGRQIRVNLAT 112
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 47/69 (68%), Gaps = 4/69 (5%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
+K+F+GG+A+ D++R F ++GE+++ VI D+ TGRS+G+GFVTF EAA A Q
Sbjct: 40 SKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query: 84 NPSPVIDGR 92
+DGR
Sbjct: 100 ----ALDGR 104
>sp|Q6NU14|HNDLB_XENLA Heterogeneous nuclear ribonucleoprotein D-like-B OS=Xenopus laevis
GN=hnrpdl-b PE=2 SV=1
Length = 291
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
+K+F+GGL+W+T + + Y +FGE+L+ + TD TGRS+G+GFV FKD + + +
Sbjct: 34 SKMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLE 93
Query: 84 NPSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A PP GG P Y GGF
Sbjct: 94 TKEHKLDGKLIDPKRAK-ALQGKEPPKKVFVGG-LSPETTEEQIKQYFGGF 142
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ ET + +++YF FGEI + D T +G+ FVT+ D E + ++
Sbjct: 120 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTDEEPVQKLLES 179
>sp|Q640A2|HNRDL_XENTR Heterogeneous nuclear ribonucleoprotein D-like OS=Xenopus
tropicalis GN=hnrpdl PE=2 SV=1
Length = 297
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A A K + P + G P Y GGF
Sbjct: 87 KEHKLDGKLIDPKRAK--ALKGKEPPKKVFVGGLSPETTEEQIKQYFGGF 134
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
K+FVGGL+ ET + +++YF FGEI + D T +G+ FVT+ E + +
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPMDTKTNERRGFCFVTYTGEEPVKKLLE 170
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T + R F QFGE++++ +I D+ TGRS+G+GFVTFKD ++ A
Sbjct: 7 RCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDE 66
Query: 85 PS-PVIDGRRANCNLA 99
+ +DGR N A
Sbjct: 67 MNGKELDGRTITVNEA 82
>sp|Q14103|HNRPD_HUMAN Heterogeneous nuclear ribonucleoprotein D0 OS=Homo sapiens
GN=HNRNPD PE=1 SV=1
Length = 355
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 85 PS-----PVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSS-SY 138
VID +RA A KT+ P + G P Y GGF
Sbjct: 158 KEHKLNGKVIDPKRAK-------AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 210
Query: 139 VHQPTGQYTFPYSAYGYTGYSQD----TMYALNYYNI 171
+ P T + + + ++ + Y+N+
Sbjct: 211 IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 50/76 (65%), Gaps = 1/76 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T +++ + F QFG+I ++ +I D+ TGRS+G+GFVTFKD ++ A +
Sbjct: 7 RCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEG 66
Query: 85 PS-PVIDGRRANCNLA 99
+ +DGR N A
Sbjct: 67 MNGQELDGRNITVNEA 82
>sp|Q60668|HNRPD_MOUSE Heterogeneous nuclear ribonucleoprotein D0 OS=Mus musculus
GN=Hnrnpd PE=1 SV=2
Length = 355
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 72/157 (45%), Gaps = 17/157 (10%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FGE+++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 98 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 157
Query: 85 PS-----PVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGFSS-SY 138
VID +RA A KT+ P + G P Y GGF
Sbjct: 158 KEHKLNGKVIDPKRAK-------AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVES 210
Query: 139 VHQPTGQYTFPYSAYGYTGYSQD----TMYALNYYNI 171
+ P T + + + ++ + Y+N+
Sbjct: 211 IELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNV 247
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 182 KKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 241
>sp|Q7ZX83|HNDLA_XENLA Heterogeneous nuclear ribonucleoprotein D-like-A OS=Xenopus laevis
GN=hnrpdl-a PE=2 SV=1
Length = 293
Score = 71.6 bits (174), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+L+ + TD TGRS+G+GFV FKD + + +
Sbjct: 27 KMFIGGLSWDTSKKDLTEYLSRFGEVLDCTIKTDPVTGRSRGFGFVLFKDAVSVDKVLET 86
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A A K + P + G P Y GGF
Sbjct: 87 NEHKLDGKLIDPKRAK--ALKGKEPPKKVFVGGLSPETTEEQIKQYFGGF 134
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
K+FVGGL+ ET + +++YF FGEI + D T +G+ FVT+ E + +
Sbjct: 112 KVFVGGLSPETTEEQIKQYFGGFGEIENIELPIDTKTNERRGFCFVTYTGEEPVKKLLE 170
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 71.2 bits (173), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T ++ F QFGE++++ +I D+ TGRS+G+GFVTFKD ++ A +
Sbjct: 9 RCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 85 PS-PVIDGRRANCNLA 99
+ +DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
+KIFVGG+++ T +R F ++GE+++A +I D+ TGRS+G+ FVTF E A A Q
Sbjct: 34 SKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query: 84 NPSPVIDGRRANCNLAS 100
+ GRR N A+
Sbjct: 94 LDGQDLHGRRIRVNYAT 110
>sp|Q9JJ54|HNRPD_RAT Heterogeneous nuclear ribonucleoprotein D0 OS=Rattus norvegicus
GN=Hnrnpd PE=1 SV=1
Length = 353
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 59/110 (53%), Gaps = 2/110 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + ++ YF +FG++++ + D TGRS+G+GFV FK+ E+ +
Sbjct: 96 KMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ 155
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
++G+ + A A KT+ P + G P Y GGF
Sbjct: 156 KEHKLNGKVIDPKRAK--AMKTKEPVKKIFVGGLSPDTPEEKIREYFGGF 203
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
KIFVGGL+ +T + +R YF FGE+ + D T + +G+ F+TFK+ E + +
Sbjct: 181 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME 239
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T + F Q+GE+L++ +I D+ TGRS+G+GFVTFKD ++ A +
Sbjct: 9 RCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEG 68
Query: 85 PS-PVIDGRRANCNLA 99
+ +DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis
thaliana GN=RBG1 PE=2 SV=2
Length = 149
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/69 (44%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T ++ R F +FGE+ ++ +I D+ TGRSKG+ FVTFKD ++ A
Sbjct: 9 RCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSMRTAIDR 68
Query: 85 PS-PVIDGR 92
+ +DGR
Sbjct: 69 MNGQELDGR 77
>sp|Q5ZI72|HNRDL_CHICK Heterogeneous nuclear ribonucleoprotein D-like OS=Gallus gallus
GN=HNRPDL PE=2 SV=1
Length = 301
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 31 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVEKVLEL 90
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A A K + P + G P Y G F
Sbjct: 91 KEHKLDGKLIDPKRAK--ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAF 138
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + +
Sbjct: 116 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 174
>sp|Q925G0|RBM3_RAT Putative RNA-binding protein 3 OS=Rattus norvegicus GN=Rbm3 PE=1
SV=2
Length = 155
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 54/97 (55%), Gaps = 6/97 (6%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAA---MRA 81
K+FVGGL + T + +F FG I E VV+ D+ T RS+G+GF+TF +PE A MRA
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASDVMRA 66
Query: 82 CQNPSPVIDGRRANCNLASLGAHKTRPPT-PQHGGGR 117
S +DGR+ + A A TR HG GR
Sbjct: 67 MNGES--LDGRQIRVDHAGKSARGTRGGAFGAHGRGR 101
>sp|Q3SWU3|HNRDL_RAT Heterogeneous nuclear ribonucleoprotein D-like OS=Rattus norvegicus
GN=Hnrpdl PE=2 SV=1
Length = 322
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/96 (34%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80
T+ K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + +
Sbjct: 48 TSGNKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDK 107
Query: 81 ACQNPSPVIDGRRANCNLASLGAHKTRPPTPQHGGG 116
+ +DG+ + A K PP GG
Sbjct: 108 VLELKEHKLDGKLIDPKRAKALKGK-EPPKKVFVGG 142
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + ++
Sbjct: 137 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLES 196
>sp|Q9Z130|HNRDL_MOUSE Heterogeneous nuclear ribonucleoprotein D-like OS=Mus musculus
GN=Hnrpdl PE=1 SV=1
Length = 301
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 30 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 89
Query: 85 PSPVIDGRRANCNLASLGAHKTRPPTPQHGGGRFRPAPGLVAPPAYHGGF 134
+DG+ + A A K + P + G P Y G F
Sbjct: 90 KEHKLDGKLIDPKRAK--ALKGKEPPKKVFVGGLSPDTSEEQIKEYFGAF 137
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + +
Sbjct: 115 KVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 173
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
+ FVGGLAW T + F Q+G+++++ +I D+ TGRS+G+GFVTFKD +A A +
Sbjct: 9 RCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEG 68
Query: 85 PS-PVIDGRRANCNLA 99
+ +DGR N A
Sbjct: 69 MNGQDLDGRSITVNEA 84
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1 PE=1
SV=1
Length = 362
Score = 68.9 bits (167), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 48/75 (64%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ T + +++YFEQFG++ +A+++ DK T R +G+GFVTF+ + + C+
Sbjct: 110 KIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 85 PSPVIDGRRANCNLA 99
I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T ++ +R YF QFGE+ E +V+ D T RS+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 85 PSPVIDGRRANCNLA 99
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 68.6 bits (166), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+FVGGL +ET +++ + F ++G++ E VV+ D+ + RS+G+GFVTF++PE A A
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 85 PS-PVIDGRRANCNLA 99
+ +DGR+ + A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|O14979|HNRDL_HUMAN Heterogeneous nuclear ribonucleoprotein D-like OS=Homo sapiens
GN=HNRPDL PE=1 SV=3
Length = 420
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 44/68 (64%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T + + Y +FGE+++ + TD TGRS+G+GFV FKD + + +
Sbjct: 149 KMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLEL 208
Query: 85 PSPVIDGR 92
+DG+
Sbjct: 209 KEHKLDGK 216
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83
K+FVGGL+ +T + ++ YF FGEI + D T +G+ F+T+ D E + +
Sbjct: 233 KKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLE 292
Query: 84 N 84
+
Sbjct: 293 S 293
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1
PE=1 SV=1
Length = 362
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 46/75 (61%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
K+F+GGL+W+T ++ +R YF QFGE+ E +V+ D T RS+G+GFVTF D +
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 80
Query: 85 PSPVIDGRRANCNLA 99
+D + + +A
Sbjct: 81 SRHELDSKTIDPKVA 95
Score = 68.2 bits (165), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 47/75 (62%)
Query: 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84
KIFVGGL+ T + ++ YFEQFG++ +A+++ DK T R +G+GFVTF+ + + C+
Sbjct: 110 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEI 169
Query: 85 PSPVIDGRRANCNLA 99
I+ + C A
Sbjct: 170 HFHEINNKMVECKKA 184
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,570,467
Number of Sequences: 539616
Number of extensions: 5641917
Number of successful extensions: 19551
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 274
Number of HSP's that attempted gapping in prelim test: 17337
Number of HSP's gapped (non-prelim): 2136
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)