Query 023688
Match_columns 278
No_of_seqs 365 out of 1882
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:54:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023688.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023688hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149 Predicted RNA-binding 99.9 1.3E-22 2.8E-27 175.5 13.6 87 16-102 5-91 (247)
2 PLN03134 glycine-rich RNA-bind 99.9 1.9E-20 4.1E-25 154.8 14.9 84 20-103 31-115 (144)
3 TIGR01659 sex-lethal sex-letha 99.7 2.4E-17 5.3E-22 154.2 15.0 85 20-104 190-277 (346)
4 KOG0117 Heterogeneous nuclear 99.7 4.9E-17 1.1E-21 151.6 16.3 85 19-111 255-340 (506)
5 TIGR01659 sex-lethal sex-letha 99.7 2E-17 4.3E-22 154.8 12.9 86 17-102 101-187 (346)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 8.1E-17 1.8E-21 150.1 12.6 83 21-103 267-350 (352)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 1.3E-16 2.8E-21 148.8 11.4 82 22-103 2-84 (352)
8 KOG0113 U1 small nuclear ribon 99.7 4E-16 8.6E-21 139.2 11.6 105 7-111 85-190 (335)
9 KOG0148 Apoptosis-promoting RN 99.7 1.4E-15 3.1E-20 134.2 13.2 81 18-104 159-240 (321)
10 PF00076 RRM_1: RNA recognitio 99.6 6.6E-16 1.4E-20 110.2 7.9 69 26-95 1-70 (70)
11 KOG0125 Ataxin 2-binding prote 99.6 8.2E-16 1.8E-20 138.8 8.9 84 19-104 92-176 (376)
12 TIGR01648 hnRNP-R-Q heterogene 99.6 1E-14 2.2E-19 143.9 17.3 77 21-105 231-310 (578)
13 KOG0122 Translation initiation 99.6 2.1E-15 4.6E-20 131.4 9.3 82 21-102 187-269 (270)
14 TIGR01628 PABP-1234 polyadenyl 99.6 1.1E-14 2.4E-19 144.4 14.4 83 20-103 282-365 (562)
15 TIGR01645 half-pint poly-U bin 99.6 6.4E-15 1.4E-19 145.8 12.1 82 21-102 202-284 (612)
16 KOG0144 RNA-binding protein CU 99.6 2.1E-15 4.6E-20 140.2 8.1 99 7-105 18-120 (510)
17 KOG4207 Predicted splicing fac 99.6 6E-15 1.3E-19 125.9 9.6 86 19-104 9-95 (256)
18 KOG0121 Nuclear cap-binding pr 99.6 3.9E-15 8.4E-20 118.3 7.4 82 19-100 32-114 (153)
19 PF14259 RRM_6: RNA recognitio 99.6 7E-15 1.5E-19 105.8 7.7 69 26-95 1-70 (70)
20 PLN03120 nucleic acid binding 99.6 1.4E-14 3E-19 129.1 11.0 76 23-101 4-79 (260)
21 TIGR01645 half-pint poly-U bin 99.6 1E-14 2.2E-19 144.4 10.6 80 21-100 105-185 (612)
22 KOG0144 RNA-binding protein CU 99.6 2.7E-15 5.8E-20 139.5 5.8 86 21-107 122-211 (510)
23 TIGR01628 PABP-1234 polyadenyl 99.6 1.3E-14 2.9E-19 143.9 10.8 77 25-101 2-79 (562)
24 KOG0107 Alternative splicing f 99.6 1.9E-14 4E-19 120.0 9.6 76 22-102 9-85 (195)
25 TIGR01648 hnRNP-R-Q heterogene 99.6 2E-14 4.4E-19 141.8 11.4 78 21-99 56-135 (578)
26 KOG0111 Cyclophilin-type pepti 99.5 6.5E-15 1.4E-19 126.7 5.7 91 19-109 6-97 (298)
27 KOG0105 Alternative splicing f 99.5 6.1E-14 1.3E-18 117.9 9.9 80 21-103 4-84 (241)
28 KOG0148 Apoptosis-promoting RN 99.5 3.4E-14 7.4E-19 125.5 8.2 85 19-103 58-143 (321)
29 TIGR01642 U2AF_lg U2 snRNP aux 99.5 1.2E-13 2.7E-18 135.0 12.6 82 21-102 293-375 (509)
30 TIGR01622 SF-CC1 splicing fact 99.5 1E-13 2.2E-18 133.9 11.6 84 19-102 85-168 (457)
31 KOG0117 Heterogeneous nuclear 99.5 7.8E-14 1.7E-18 130.3 10.2 95 6-100 64-162 (506)
32 TIGR01622 SF-CC1 splicing fact 99.5 1.3E-13 2.8E-18 133.2 11.6 79 23-101 186-265 (457)
33 smart00362 RRM_2 RNA recogniti 99.5 2E-13 4.3E-18 96.2 8.9 71 25-97 1-72 (72)
34 PLN03213 repressor of silencin 99.5 1.3E-13 2.8E-18 130.3 9.5 80 19-102 6-88 (759)
35 smart00360 RRM RNA recognition 99.5 2.6E-13 5.7E-18 95.1 8.6 70 28-97 1-71 (71)
36 COG0724 RNA-binding proteins ( 99.5 2.4E-13 5.2E-18 118.8 10.0 79 23-101 115-194 (306)
37 PLN03121 nucleic acid binding 99.5 4E-13 8.6E-18 118.2 10.7 76 22-100 4-79 (243)
38 KOG4205 RNA-binding protein mu 99.4 8.5E-13 1.8E-17 121.2 12.3 87 22-108 96-182 (311)
39 KOG0108 mRNA cleavage and poly 99.4 1.6E-13 3.5E-18 131.0 7.8 84 24-107 19-103 (435)
40 KOG4205 RNA-binding protein mu 99.4 2.5E-13 5.5E-18 124.7 6.3 84 22-105 5-88 (311)
41 cd00590 RRM RRM (RNA recogniti 99.4 2.1E-12 4.5E-17 91.4 9.5 73 25-98 1-74 (74)
42 KOG0130 RNA-binding protein RB 99.4 1.2E-12 2.6E-17 105.1 8.3 88 15-102 64-152 (170)
43 KOG0145 RNA-binding protein EL 99.4 1.4E-12 3E-17 114.9 9.3 87 18-104 36-123 (360)
44 KOG0126 Predicted RNA-binding 99.4 7E-14 1.5E-18 117.2 0.3 80 21-100 33-113 (219)
45 KOG0127 Nucleolar protein fibr 99.4 2.9E-12 6.4E-17 122.4 10.6 86 18-103 287-379 (678)
46 KOG0131 Splicing factor 3b, su 99.4 1E-12 2.2E-17 110.3 6.1 80 21-100 7-87 (203)
47 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 3.7E-12 8E-17 124.4 11.0 78 20-102 272-351 (481)
48 KOG0109 RNA-binding protein LA 99.4 1.2E-12 2.7E-17 116.8 6.6 71 24-102 3-74 (346)
49 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.4 4E-12 8.6E-17 124.2 10.8 74 23-102 2-78 (481)
50 KOG4212 RNA-binding protein hn 99.3 7.5E-12 1.6E-16 117.0 11.6 83 20-103 41-125 (608)
51 KOG0116 RasGAP SH3 binding pro 99.3 1.6E-11 3.4E-16 116.9 13.1 87 21-107 286-372 (419)
52 KOG0127 Nucleolar protein fibr 99.3 5.3E-12 1.2E-16 120.7 9.1 83 20-103 114-197 (678)
53 smart00361 RRM_1 RNA recogniti 99.3 1.1E-11 2.3E-16 89.8 7.6 61 37-97 2-70 (70)
54 KOG0146 RNA-binding protein ET 99.3 4.2E-12 9.1E-17 112.3 6.5 84 21-105 17-104 (371)
55 KOG0146 RNA-binding protein ET 99.3 5.8E-12 1.3E-16 111.4 5.5 86 18-103 280-366 (371)
56 KOG0114 Predicted RNA-binding 99.3 3.7E-11 8.1E-16 92.4 9.0 80 19-101 14-94 (124)
57 KOG0415 Predicted peptidyl pro 99.2 1.5E-11 3.3E-16 112.4 7.1 90 12-101 228-318 (479)
58 KOG0145 RNA-binding protein EL 99.2 4.3E-11 9.2E-16 105.6 9.4 84 19-102 274-358 (360)
59 KOG0131 Splicing factor 3b, su 99.2 1.8E-11 4E-16 102.8 6.4 81 23-103 96-178 (203)
60 PF13893 RRM_5: RNA recognitio 99.2 6.1E-11 1.3E-15 81.8 6.8 55 40-99 1-56 (56)
61 KOG0109 RNA-binding protein LA 99.2 1E-10 2.2E-15 104.6 9.3 78 19-104 74-152 (346)
62 KOG0147 Transcriptional coacti 99.2 3.1E-11 6.7E-16 115.7 5.6 80 23-102 278-358 (549)
63 KOG0153 Predicted RNA-binding 99.1 1.3E-10 2.7E-15 106.2 8.4 80 16-101 221-302 (377)
64 KOG0124 Polypyrimidine tract-b 99.1 4.8E-11 1E-15 109.5 4.1 77 23-99 113-190 (544)
65 KOG0123 Polyadenylate-binding 99.1 2.4E-10 5.3E-15 108.0 8.4 78 26-106 79-157 (369)
66 KOG0132 RNA polymerase II C-te 99.1 3.4E-10 7.3E-15 112.2 7.7 78 21-104 419-497 (894)
67 TIGR01642 U2AF_lg U2 snRNP aux 99.0 9.9E-10 2.1E-14 107.5 10.7 76 18-100 170-258 (509)
68 KOG4661 Hsp27-ERE-TATA-binding 99.0 1.7E-09 3.6E-14 104.2 9.5 86 19-104 401-487 (940)
69 KOG4208 Nucleolar RNA-binding 99.0 2.4E-09 5.1E-14 91.8 8.1 85 18-102 44-130 (214)
70 KOG0124 Polypyrimidine tract-b 99.0 1.6E-09 3.5E-14 99.6 7.4 83 20-102 207-290 (544)
71 KOG4206 Spliceosomal protein s 98.9 2.5E-09 5.4E-14 92.8 8.1 79 22-103 8-91 (221)
72 KOG0533 RRM motif-containing p 98.9 8.9E-09 1.9E-13 91.6 8.9 85 19-104 79-164 (243)
73 KOG0110 RNA-binding protein (R 98.9 5.1E-09 1.1E-13 103.1 8.0 78 23-100 515-596 (725)
74 KOG0110 RNA-binding protein (R 98.8 2E-09 4.3E-14 106.0 4.4 84 19-102 609-693 (725)
75 KOG0123 Polyadenylate-binding 98.8 8E-09 1.7E-13 97.7 8.0 73 24-102 2-75 (369)
76 KOG4212 RNA-binding protein hn 98.8 5.8E-09 1.3E-13 97.9 6.6 76 19-99 532-608 (608)
77 KOG0226 RNA-binding proteins [ 98.8 2.5E-09 5.3E-14 94.2 3.6 83 18-100 185-268 (290)
78 KOG4209 Splicing factor RNPS1, 98.7 1.8E-08 4E-13 89.4 6.6 85 17-102 95-180 (231)
79 KOG1457 RNA binding protein (c 98.7 1E-07 2.3E-12 82.8 10.5 89 19-107 30-123 (284)
80 KOG4211 Splicing factor hnRNP- 98.6 1.8E-07 3.9E-12 89.2 8.8 79 19-100 6-84 (510)
81 KOG4660 Protein Mei2, essentia 98.5 5.3E-08 1.2E-12 93.9 3.8 73 18-95 70-143 (549)
82 KOG4454 RNA binding protein (R 98.5 3.8E-08 8.3E-13 85.2 2.4 79 21-101 7-86 (267)
83 KOG0106 Alternative splicing f 98.5 1.2E-07 2.5E-12 82.9 5.3 70 24-101 2-72 (216)
84 KOG1548 Transcription elongati 98.5 5.2E-07 1.1E-11 82.7 9.1 85 19-104 130-223 (382)
85 KOG4211 Splicing factor hnRNP- 98.4 1.4E-06 3.1E-11 83.1 10.3 80 21-101 101-181 (510)
86 PF04059 RRM_2: RNA recognitio 98.4 2E-06 4.3E-11 66.3 8.4 79 24-102 2-87 (97)
87 KOG1995 Conserved Zn-finger pr 98.3 1.8E-06 3.8E-11 79.7 8.6 86 18-103 61-155 (351)
88 KOG0151 Predicted splicing reg 98.3 9.2E-07 2E-11 87.5 7.0 85 17-101 168-256 (877)
89 KOG4210 Nuclear localization s 98.2 1.6E-06 3.4E-11 79.5 5.6 81 23-104 184-266 (285)
90 KOG0120 Splicing factor U2AF, 98.1 4.1E-06 8.8E-11 81.4 6.4 88 18-105 284-372 (500)
91 KOG4849 mRNA cleavage factor I 98.0 0.001 2.2E-08 61.6 18.8 74 20-93 77-153 (498)
92 KOG0147 Transcriptional coacti 98.0 2E-06 4.3E-11 83.1 0.9 85 19-103 175-259 (549)
93 PF08777 RRM_3: RNA binding mo 97.9 2E-05 4.2E-10 61.7 5.3 69 24-98 2-76 (105)
94 KOG1457 RNA binding protein (c 97.9 1.2E-05 2.6E-10 70.1 3.5 62 22-87 209-270 (284)
95 PF11608 Limkain-b1: Limkain b 97.8 7.2E-05 1.6E-09 55.8 6.3 68 24-101 3-76 (90)
96 KOG0106 Alternative splicing f 97.8 2.6E-05 5.6E-10 68.3 4.1 74 19-100 95-169 (216)
97 KOG0129 Predicted RNA-binding 97.7 0.00011 2.3E-09 70.9 7.8 95 4-99 349-451 (520)
98 KOG1855 Predicted RNA-binding 97.7 4.1E-05 8.9E-10 72.2 4.9 71 18-88 226-309 (484)
99 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.0001 2.3E-09 50.4 5.7 52 24-82 2-53 (53)
100 KOG0129 Predicted RNA-binding 97.7 9.6E-05 2.1E-09 71.3 6.9 66 20-86 256-327 (520)
101 KOG1190 Polypyrimidine tract-b 97.7 4.8E-05 1E-09 71.4 4.7 74 21-100 26-102 (492)
102 COG5175 MOT2 Transcriptional r 97.6 0.00012 2.6E-09 67.3 6.6 85 18-102 109-203 (480)
103 KOG1190 Polypyrimidine tract-b 97.6 0.00045 9.8E-09 65.0 9.4 76 23-103 297-374 (492)
104 KOG4307 RNA binding protein RB 97.6 0.00021 4.5E-09 71.1 7.5 77 22-98 866-943 (944)
105 KOG4206 Spliceosomal protein s 97.4 0.00058 1.2E-08 59.7 7.8 76 20-100 143-220 (221)
106 PF05172 Nup35_RRM: Nup53/35/4 97.4 0.00097 2.1E-08 51.7 7.7 79 21-100 4-90 (100)
107 KOG1365 RNA-binding protein Fu 97.2 0.00069 1.5E-08 63.4 5.8 78 23-101 280-361 (508)
108 KOG1548 Transcription elongati 97.1 0.0019 4E-08 59.8 7.6 81 18-102 260-352 (382)
109 KOG2314 Translation initiation 97.1 0.0023 5E-08 62.6 8.4 77 22-99 57-141 (698)
110 PF10309 DUF2414: Protein of u 97.0 0.005 1.1E-07 43.5 7.2 57 21-85 3-62 (62)
111 KOG1365 RNA-binding protein Fu 96.9 0.00064 1.4E-08 63.6 3.0 74 23-97 161-238 (508)
112 KOG3152 TBP-binding protein, a 96.8 0.00086 1.9E-08 59.7 2.8 71 23-93 74-157 (278)
113 KOG0128 RNA-binding protein SA 96.8 0.0011 2.3E-08 67.5 3.7 79 23-102 736-815 (881)
114 KOG0120 Splicing factor U2AF, 96.8 0.0036 7.8E-08 61.2 7.0 64 38-101 424-491 (500)
115 KOG0105 Alternative splicing f 96.7 0.023 5E-07 48.6 10.8 74 19-99 111-187 (241)
116 KOG1456 Heterogeneous nuclear 96.6 0.019 4.2E-07 53.8 10.2 78 19-101 283-362 (494)
117 PF08675 RNA_bind: RNA binding 96.5 0.008 1.7E-07 44.9 5.7 58 20-86 6-63 (87)
118 KOG0115 RNA-binding protein p5 96.5 0.0028 6.2E-08 56.5 3.7 62 24-86 32-93 (275)
119 KOG2591 c-Mpl binding protein, 96.4 0.004 8.6E-08 60.9 4.6 72 21-99 173-249 (684)
120 PF08952 DUF1866: Domain of un 96.4 0.012 2.7E-07 48.5 6.8 58 39-104 52-109 (146)
121 KOG2193 IGF-II mRNA-binding pr 96.3 0.0025 5.4E-08 60.4 2.3 76 24-105 2-79 (584)
122 KOG1996 mRNA splicing factor [ 96.2 0.014 3E-07 53.1 6.8 64 37-100 300-365 (378)
123 KOG2202 U2 snRNP splicing fact 96.2 0.0018 4E-08 57.6 1.1 61 39-100 84-146 (260)
124 KOG0128 RNA-binding protein SA 96.2 0.00031 6.7E-09 71.3 -4.4 70 22-91 666-735 (881)
125 KOG4676 Splicing factor, argin 96.0 0.01 2.2E-07 55.9 5.2 76 25-100 9-87 (479)
126 KOG1456 Heterogeneous nuclear 95.8 0.54 1.2E-05 44.4 15.4 78 21-103 118-200 (494)
127 KOG4307 RNA binding protein RB 95.6 0.014 3.1E-07 58.5 4.5 77 20-97 431-509 (944)
128 KOG0112 Large RNA-binding prot 95.3 0.02 4.3E-07 58.9 4.3 78 19-102 451-531 (975)
129 KOG4210 Nuclear localization s 95.2 0.019 4.1E-07 52.7 3.7 81 21-101 86-167 (285)
130 PF15023 DUF4523: Protein of u 95.0 0.15 3.3E-06 41.9 7.8 76 19-101 82-161 (166)
131 KOG0112 Large RNA-binding prot 94.7 0.0076 1.6E-07 61.9 -0.5 80 19-99 368-448 (975)
132 KOG2135 Proteins containing th 94.5 0.029 6.3E-07 54.0 2.9 78 19-102 368-446 (526)
133 KOG2068 MOT2 transcription fac 94.3 0.013 2.9E-07 54.1 0.3 82 21-102 75-163 (327)
134 KOG2416 Acinus (induces apopto 94.2 0.043 9.3E-07 54.3 3.6 76 19-100 440-520 (718)
135 KOG4285 Mitotic phosphoprotein 93.5 0.31 6.7E-06 44.7 7.5 70 23-99 197-267 (350)
136 PF03880 DbpA: DbpA RNA bindin 93.2 0.36 7.8E-06 35.0 6.2 66 25-99 2-74 (74)
137 PF03467 Smg4_UPF3: Smg-4/UPF3 92.1 0.12 2.5E-06 44.1 2.6 80 21-100 5-96 (176)
138 PF04847 Calcipressin: Calcipr 91.8 0.65 1.4E-05 39.9 6.9 61 36-102 8-71 (184)
139 KOG4660 Protein Mei2, essentia 91.6 0.27 5.8E-06 48.4 4.8 56 47-102 413-473 (549)
140 KOG2253 U1 snRNP complex, subu 91.4 0.1 2.2E-06 52.2 1.7 70 21-99 38-108 (668)
141 PF07576 BRAP2: BRCA1-associat 90.8 4.5 9.7E-05 31.8 10.2 63 23-87 13-76 (110)
142 KOG4574 RNA-binding protein (c 86.9 0.41 8.9E-06 49.4 2.3 72 25-102 300-374 (1007)
143 PF07530 PRE_C2HC: Associated 83.3 3.8 8.2E-05 29.4 5.3 60 38-100 2-63 (68)
144 KOG4483 Uncharacterized conser 82.7 4.5 9.7E-05 38.7 6.9 64 20-90 388-452 (528)
145 smart00596 PRE_C2HC PRE_C2HC d 79.8 4.3 9.2E-05 29.3 4.5 60 38-100 2-63 (69)
146 KOG4410 5-formyltetrahydrofola 79.7 6.9 0.00015 35.9 6.8 48 23-76 330-378 (396)
147 PF11767 SET_assoc: Histone ly 78.4 11 0.00024 26.9 6.3 52 34-94 11-63 (66)
148 KOG4454 RNA binding protein (R 77.2 0.47 1E-05 41.8 -1.3 68 17-85 74-145 (267)
149 PF10567 Nab6_mRNP_bdg: RNA-re 74.3 7.2 0.00016 35.9 5.4 84 18-101 10-107 (309)
150 KOG4676 Splicing factor, argin 72.7 0.5 1.1E-05 44.9 -2.4 63 23-89 151-213 (479)
151 KOG0804 Cytoplasmic Zn-finger 70.1 18 0.00039 35.2 7.3 66 20-87 71-137 (493)
152 PF15513 DUF4651: Domain of un 68.7 11 0.00025 26.5 4.3 19 38-56 9-27 (62)
153 PRK11634 ATP-dependent RNA hel 65.3 70 0.0015 32.7 11.0 68 24-100 487-561 (629)
154 PF03468 XS: XS domain; Inter 63.7 15 0.00033 29.1 4.7 47 35-84 29-76 (116)
155 KOG4019 Calcineurin-mediated s 57.5 9.9 0.00021 32.6 2.7 74 23-102 10-90 (193)
156 COG0724 RNA-binding proteins ( 54.6 19 0.00042 30.5 4.2 58 17-74 219-276 (306)
157 KOG2891 Surface glycoprotein [ 52.2 19 0.00041 33.1 3.8 35 23-57 149-195 (445)
158 KOG2193 IGF-II mRNA-binding pr 52.2 1 2.2E-05 43.3 -4.5 77 21-101 78-156 (584)
159 PF08206 OB_RNB: Ribonuclease 49.7 2.1 4.7E-05 29.4 -2.1 37 64-100 7-44 (58)
160 KOG2295 C2H2 Zn-finger protein 49.2 2.9 6.3E-05 41.5 -1.9 65 22-86 230-294 (648)
161 PF11411 DNA_ligase_IV: DNA li 47.4 14 0.0003 23.2 1.5 16 33-48 19-34 (36)
162 PF07292 NID: Nmi/IFP 35 domai 42.9 38 0.00083 25.5 3.7 32 68-99 1-34 (88)
163 PF07292 NID: Nmi/IFP 35 domai 42.9 12 0.00027 28.2 1.0 26 19-44 48-73 (88)
164 PF02714 DUF221: Domain of unk 38.9 31 0.00068 31.6 3.3 32 68-100 1-32 (325)
165 PRK01178 rps24e 30S ribosomal 37.5 90 0.0019 24.1 5.0 47 33-80 29-80 (99)
166 COG5193 LHP1 La protein, small 35.8 16 0.00035 35.0 0.8 64 20-83 171-244 (438)
167 KOG3424 40S ribosomal protein 34.8 1.3E+02 0.0028 24.1 5.6 47 33-80 33-84 (132)
168 KOG4008 rRNA processing protei 34.2 36 0.00077 30.5 2.6 36 18-53 35-70 (261)
169 KOG4365 Uncharacterized conser 34.1 6.6 0.00014 38.1 -2.0 77 24-101 4-81 (572)
170 PF08734 GYD: GYD domain; Int 33.0 1.8E+02 0.0038 21.8 6.0 46 37-86 22-68 (91)
171 PF09707 Cas_Cas2CT1978: CRISP 31.9 1.1E+02 0.0023 23.0 4.5 48 23-73 25-72 (86)
172 PF14893 PNMA: PNMA 31.0 18 0.00039 34.0 0.3 25 22-46 17-41 (331)
173 KOG4213 RNA-binding protein La 30.5 63 0.0014 27.8 3.4 59 23-86 111-171 (205)
174 KOG3432 Vacuolar H+-ATPase V1 28.2 86 0.0019 24.7 3.6 27 31-57 41-67 (121)
175 COG5353 Uncharacterized protei 26.8 3.2E+02 0.007 22.8 6.8 54 24-77 88-154 (161)
176 PF04026 SpoVG: SpoVG; InterP 26.7 1.2E+02 0.0027 22.5 4.1 26 49-74 2-27 (84)
177 TIGR01873 cas_CT1978 CRISPR-as 25.5 61 0.0013 24.4 2.3 49 23-74 25-74 (87)
178 PTZ00071 40S ribosomal protein 25.5 1.6E+02 0.0035 24.0 4.8 45 34-79 35-85 (132)
179 KOG0921 Dosage compensation co 25.2 3.9E+02 0.0085 29.0 8.6 10 71-80 1087-1096(1282)
180 PF03439 Spt5-NGN: Early trans 23.7 85 0.0018 23.1 2.8 25 64-88 43-67 (84)
181 PRK11901 hypothetical protein; 23.5 83 0.0018 29.5 3.2 62 23-89 245-308 (327)
182 PRK10905 cell division protein 23.5 78 0.0017 29.6 3.0 55 33-89 254-310 (328)
183 PHA01632 hypothetical protein 23.4 85 0.0018 21.7 2.4 20 27-46 20-39 (64)
184 PRK11558 putative ssRNA endonu 23.0 1.5E+02 0.0032 22.9 3.9 50 23-75 27-76 (97)
185 PF13046 DUF3906: Protein of u 22.9 83 0.0018 22.3 2.4 33 36-70 31-63 (64)
186 PF00403 HMA: Heavy-metal-asso 22.7 2.4E+02 0.0052 18.7 6.2 55 25-85 1-59 (62)
187 KOG0156 Cytochrome P450 CYP2 s 22.6 1.5E+02 0.0033 29.3 5.1 59 27-94 36-97 (489)
188 PF14401 RLAN: RimK-like ATPgr 21.9 2E+02 0.0044 23.8 5.0 61 21-81 85-146 (153)
189 PRK13259 regulatory protein Sp 21.1 1.6E+02 0.0035 22.5 3.8 26 49-74 2-27 (94)
190 TIGR03636 L23_arch archaeal ri 20.5 2.8E+02 0.0061 20.2 4.9 57 25-84 15-73 (77)
No 1
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.3e-22 Score=175.46 Aligned_cols=87 Identities=80% Similarity=1.373 Sum_probs=83.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEE
Q 023688 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRAN 95 (278)
Q Consensus 16 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~ 95 (278)
....|+..+|||||+|+|++.+|+|+++|++||+|++++||.|+.|+++|||+||+|+|.|+|++||+..+.+||||+..
T Consensus 5 ~~~~DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aN 84 (247)
T KOG0149|consen 5 NPFGDTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKAN 84 (247)
T ss_pred CCCCCceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcccccccc
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|++|...
T Consensus 85 cnlA~lg 91 (247)
T KOG0149|consen 85 CNLASLG 91 (247)
T ss_pred cchhhhc
Confidence 9999874
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=1.9e-20 Score=154.76 Aligned_cols=84 Identities=39% Similarity=0.716 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
....++|||+||+++++|++|+++|++||.|++|+|+.|+.|+++||||||+|+++++|++||+.++ .+|+|++|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3456789999999999999999999999999999999999999999999999999999999999988 689999999999
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
+..+.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 97543
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.75 E-value=2.4e-17 Score=154.23 Aligned_cols=85 Identities=25% Similarity=0.419 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCC--eeEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG--RRANC 96 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G--r~l~V 96 (278)
+...++|||+|||++++|++|+++|++||+|++|+|++|+.++++||||||+|+++++|++||+.|+ .+|++ ++|+|
T Consensus 190 ~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V 269 (346)
T TIGR01659 190 SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTV 269 (346)
T ss_pred ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999999 45655 78999
Q ss_pred EEccCCCC
Q 023688 97 NLASLGAH 104 (278)
Q Consensus 97 ~~A~~~~~ 104 (278)
++|+...+
T Consensus 270 ~~a~~~~~ 277 (346)
T TIGR01659 270 RLAEEHGK 277 (346)
T ss_pred EECCcccc
Confidence 99976533
No 4
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=4.9e-17 Score=151.60 Aligned_cols=85 Identities=24% Similarity=0.419 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
...+.+.|||+||+.++|||.|+++|++||.|++|+.++| ||||+|.++++|.+|++.+| ++|+|..|+|.
T Consensus 255 ~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvt 326 (506)
T KOG0117|consen 255 TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVT 326 (506)
T ss_pred hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEE
Confidence 3456789999999999999999999999999999998876 99999999999999999999 68999999999
Q ss_pred EccCCCCCCCCCCC
Q 023688 98 LASLGAHKTRPPTP 111 (278)
Q Consensus 98 ~A~~~~~~~~~~~~ 111 (278)
||++..+++..+..
T Consensus 327 LAKP~~k~k~~r~~ 340 (506)
T KOG0117|consen 327 LAKPVDKKKKERKA 340 (506)
T ss_pred ecCChhhhccchhh
Confidence 99998776655433
No 5
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=2e-17 Score=154.84 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...+...++|||+|||++++|++|+++|++||+|++|+|++|+.|+++||||||+|.++++|++||+.|+ .+|.+++|+
T Consensus 101 ~~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~ 180 (346)
T TIGR01659 101 NDTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLK 180 (346)
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceee
Confidence 4566678899999999999999999999999999999999999999999999999999999999999999 679999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|.++++.
T Consensus 181 V~~a~p~ 187 (346)
T TIGR01659 181 VSYARPG 187 (346)
T ss_pred eeccccc
Confidence 9998754
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=8.1e-17 Score=150.11 Aligned_cols=83 Identities=25% Similarity=0.355 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+|||++++|++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|.+||+.|+ ..|+||+|+|.|+
T Consensus 267 ~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~ 346 (352)
T TIGR01661 267 GAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFK 346 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEc
Confidence 344579999999999999999999999999999999999999999999999999999999999999 5799999999999
Q ss_pred cCCC
Q 023688 100 SLGA 103 (278)
Q Consensus 100 ~~~~ 103 (278)
..+.
T Consensus 347 ~~~~ 350 (352)
T TIGR01661 347 TNKA 350 (352)
T ss_pred cCCC
Confidence 7654
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.69 E-value=1.3e-16 Score=148.79 Aligned_cols=82 Identities=28% Similarity=0.460 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..++|||+|||.+++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|.|++|+|++++
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 35799999999999999999999999999999999999999999999999999999999999999 57999999999997
Q ss_pred CCC
Q 023688 101 LGA 103 (278)
Q Consensus 101 ~~~ 103 (278)
+..
T Consensus 82 ~~~ 84 (352)
T TIGR01661 82 PSS 84 (352)
T ss_pred ccc
Confidence 543
No 8
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=4e-16 Score=139.24 Aligned_cols=105 Identities=28% Similarity=0.476 Sum_probs=92.1
Q ss_pred CcccCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 7 LQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 7 ~~~~~g~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
+++++-+..........++|||+-|+.+++|.+|++.|++||.|++|.|+.|+.||+++|||||+|+++.+..+|.+..+
T Consensus 85 l~~wdP~~dp~a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~ad 164 (335)
T KOG0113|consen 85 LKLWDPNNDPNAIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDAD 164 (335)
T ss_pred HHhcCCCCCCcccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhcc
Confidence 44555555555667889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CccCCeeEEEEEccCCCCCCCCCCC
Q 023688 87 -PVIDGRRANCNLASLGAHKTRPPTP 111 (278)
Q Consensus 87 -~~i~Gr~l~V~~A~~~~~~~~~~~~ 111 (278)
.+|+|+.|.|.+......+.+.+..
T Consensus 165 G~~Idgrri~VDvERgRTvkgW~PRR 190 (335)
T KOG0113|consen 165 GIKIDGRRILVDVERGRTVKGWLPRR 190 (335)
T ss_pred CceecCcEEEEEeccccccccccccc
Confidence 5799999999998877666655443
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=1.4e-15 Score=134.16 Aligned_cols=81 Identities=33% Similarity=0.535 Sum_probs=74.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
....+.++||||||+..++|++||+.|+.||.|.+|+|.+| +||+||+|+++|+|.+||..+| .+|.|..|+|
T Consensus 159 Qssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkC 232 (321)
T KOG0148|consen 159 QSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRC 232 (321)
T ss_pred cCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEE
Confidence 35567899999999999999999999999999999999987 5799999999999999999999 6899999999
Q ss_pred EEccCCCC
Q 023688 97 NLASLGAH 104 (278)
Q Consensus 97 ~~A~~~~~ 104 (278)
.|-+....
T Consensus 233 sWGKe~~~ 240 (321)
T KOG0148|consen 233 SWGKEGDD 240 (321)
T ss_pred eccccCCC
Confidence 99976543
No 10
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=6.6e-16 Score=110.20 Aligned_cols=69 Identities=35% Similarity=0.693 Sum_probs=64.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 26 IFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 26 lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
|||+|||+++++++|+++|++||.|..+++..+ .+++.+++|||+|+++++|++|++.++ ..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999998 568999999999999999999999888 579999875
No 11
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=8.2e-16 Score=138.76 Aligned_cols=84 Identities=31% Similarity=0.582 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|+|.|||+...|-||+..|++||.|.+|+||.+. .-||||+||+|++.++|++|-++|+ ..|+||+|+|+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn 169 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVN 169 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEe
Confidence 44557899999999999999999999999999999999874 5689999999999999999999999 57999999999
Q ss_pred EccCCCC
Q 023688 98 LASLGAH 104 (278)
Q Consensus 98 ~A~~~~~ 104 (278)
.|..+..
T Consensus 170 ~ATarV~ 176 (376)
T KOG0125|consen 170 NATARVH 176 (376)
T ss_pred ccchhhc
Confidence 9976643
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.63 E-value=1e-14 Score=143.93 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhC--CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~--G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
...++|||+||+++++|++|+++|++| |+|++|++++ +||||+|+++++|++||+.+| .+|+|+.|+|+
T Consensus 231 ~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r--------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 231 AKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR--------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec--------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 346789999999999999999999999 9999998764 499999999999999999998 68999999999
Q ss_pred EccCCCCC
Q 023688 98 LASLGAHK 105 (278)
Q Consensus 98 ~A~~~~~~ 105 (278)
||++..++
T Consensus 303 ~Akp~~~~ 310 (578)
T TIGR01648 303 LAKPVDKK 310 (578)
T ss_pred EccCCCcc
Confidence 99876543
No 13
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.1e-15 Score=131.43 Aligned_cols=82 Identities=27% Similarity=0.392 Sum_probs=77.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCc-cCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPV-IDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~-i~Gr~l~V~~A 99 (278)
.+..+|-|.||+.+++|++|+++|.+||.|.+|.|.+|+.||.+||||||+|.++++|.+||+.|+.. ++.-.|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 35678999999999999999999999999999999999999999999999999999999999999954 88889999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
+++
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=1.1e-14 Score=144.40 Aligned_cols=83 Identities=30% Similarity=0.501 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
....++|||+||++++++++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|++||+.++ ..|+|++|.|.+
T Consensus 282 ~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~ 360 (562)
T TIGR01628 282 KAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVAL 360 (562)
T ss_pred ccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEe
Confidence 445678999999999999999999999999999999999 579999999999999999999999999 679999999999
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
|..+.
T Consensus 361 a~~k~ 365 (562)
T TIGR01628 361 AQRKE 365 (562)
T ss_pred ccCcH
Confidence 97654
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.59 E-value=6.4e-15 Score=145.79 Aligned_cols=82 Identities=20% Similarity=0.387 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+||++++++++|+++|++||.|++|+|++|+.++++||||||+|++.++|.+||+.+| .+|+|+.|+|.++
T Consensus 202 ~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kA 281 (612)
T TIGR01645 202 KKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 281 (612)
T ss_pred cccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEec
Confidence 346799999999999999999999999999999999999999999999999999999999999999 5799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
...
T Consensus 282 i~p 284 (612)
T TIGR01645 282 VTP 284 (612)
T ss_pred CCC
Confidence 754
No 16
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=2.1e-15 Score=140.24 Aligned_cols=99 Identities=27% Similarity=0.421 Sum_probs=85.0
Q ss_pred CcccCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 7 LQMVGGNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 7 ~~~~~g~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
+.+.+.....+..|.+.-|||||-||+.++|+|||++|++||.|.+|.|++||.|+.++|||||+|.++++|.+|+..++
T Consensus 18 ~~~~~~~~~~d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alh 97 (510)
T KOG0144|consen 18 LADNGSLDHTDNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALH 97 (510)
T ss_pred hhhcCCCCCCCCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhh
Confidence 34445555556677888899999999999999999999999999999999999999999999999999999999999987
Q ss_pred --CccCC--eeEEEEEccCCCCC
Q 023688 87 --PVIDG--RRANCNLASLGAHK 105 (278)
Q Consensus 87 --~~i~G--r~l~V~~A~~~~~~ 105 (278)
++|-| ..|.|++|+.+.++
T Consensus 98 n~ktlpG~~~pvqvk~Ad~E~er 120 (510)
T KOG0144|consen 98 NQKTLPGMHHPVQVKYADGERER 120 (510)
T ss_pred cccccCCCCcceeecccchhhhc
Confidence 45654 57889998866544
No 17
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.59 E-value=6e-15 Score=125.86 Aligned_cols=86 Identities=30% Similarity=0.534 Sum_probs=79.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
+......|-|-||...++-++|+.+|++||.|-+|.|+.|+.|+.++|||||.|.+..+|++|++.|+ .+|+|+.|.|.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34455689999999999999999999999999999999999999999999999999999999999999 57999999999
Q ss_pred EccCCCC
Q 023688 98 LASLGAH 104 (278)
Q Consensus 98 ~A~~~~~ 104 (278)
+|+-...
T Consensus 89 ~arygr~ 95 (256)
T KOG4207|consen 89 MARYGRP 95 (256)
T ss_pred hhhcCCC
Confidence 9975543
No 18
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=3.9e-15 Score=118.26 Aligned_cols=82 Identities=20% Similarity=0.318 Sum_probs=76.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
....+++|||+||+..++||+|.++|+++|+|++|.+-.|+.+....|||||+|.+.++|+.|++.++ ..|+.+.|+|.
T Consensus 32 a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D 111 (153)
T KOG0121|consen 32 ALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRID 111 (153)
T ss_pred HHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeee
Confidence 34568899999999999999999999999999999999999999999999999999999999999999 56999999999
Q ss_pred Ecc
Q 023688 98 LAS 100 (278)
Q Consensus 98 ~A~ 100 (278)
|..
T Consensus 112 ~D~ 114 (153)
T KOG0121|consen 112 WDA 114 (153)
T ss_pred ccc
Confidence 874
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.58 E-value=7e-15 Score=105.79 Aligned_cols=69 Identities=32% Similarity=0.648 Sum_probs=63.8
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 26 IFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 26 lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
|||+|||+++++++|+++|+.+|.|.++++..+++ ++.+++|||+|.+.++|++|++.++ ..|+|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999987 8999999999999999999999998 679999885
No 20
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.4e-14 Score=129.11 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=69.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEccC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASL 101 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~~ 101 (278)
.++|||+||+++++|++|+++|+.||+|++|+|+.|+. .+|||||+|+++++|+.||...+..|+|+.|+|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~AllLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALLLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHHhcCCeeCCceEEEEeccC
Confidence 57999999999999999999999999999999999864 57899999999999999997434789999999999864
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.57 E-value=1e-14 Score=144.40 Aligned_cols=80 Identities=33% Similarity=0.603 Sum_probs=75.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+||+++++|++|+++|++||.|++|+|+.|+.|+++||||||+|++.++|++||+.++ ..|+||+|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999999999999999999999999999999999998 5799999999865
Q ss_pred c
Q 023688 100 S 100 (278)
Q Consensus 100 ~ 100 (278)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 4
No 22
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2.7e-15 Score=139.54 Aligned_cols=86 Identities=27% Similarity=0.458 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC--ccCC--eeEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP--VIDG--RRANC 96 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~--~i~G--r~l~V 96 (278)
.+++|||||.|++.++|+|++++|++||.|++|.|++|.+ +.+|||+||+|.++|.|..||+.+|+ .++| .+|.|
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~-~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVV 200 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPD-GLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVV 200 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheeccc-ccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEE
Confidence 4478999999999999999999999999999999999986 99999999999999999999999994 4554 68999
Q ss_pred EEccCCCCCCC
Q 023688 97 NLASLGAHKTR 107 (278)
Q Consensus 97 ~~A~~~~~~~~ 107 (278)
+||++++.|.-
T Consensus 201 kFADtqkdk~~ 211 (510)
T KOG0144|consen 201 KFADTQKDKDG 211 (510)
T ss_pred EecccCCCchH
Confidence 99998766543
No 23
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.56 E-value=1.3e-14 Score=143.85 Aligned_cols=77 Identities=29% Similarity=0.503 Sum_probs=73.5
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccC
Q 023688 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASL 101 (278)
Q Consensus 25 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~ 101 (278)
+|||+|||++++|++|+++|++||.|++|+|++|+.|++++|||||+|.+.++|++||+.++ ..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 79999999999999999999999999999999999999999999999999999999999999 569999999999853
No 24
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=1.9e-14 Score=119.99 Aligned_cols=76 Identities=28% Similarity=0.465 Sum_probs=69.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
-.++||||||+.++++.||+.+|.+||.|..|+|-..+ .|||||+|++..+|+.|+..|+ ..|+|.+|+|++..
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-----PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-----PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-----CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 36799999999999999999999999999999997654 6899999999999999999999 67999999999986
Q ss_pred CC
Q 023688 101 LG 102 (278)
Q Consensus 101 ~~ 102 (278)
..
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 54
No 25
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=2e-14 Score=141.84 Aligned_cols=78 Identities=29% Similarity=0.440 Sum_probs=68.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc-CCeeEEEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI-DGRRANCNL 98 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i-~Gr~l~V~~ 98 (278)
...++|||+|||++++|++|+++|++||.|.+|+|++| .++++||||||+|.+.++|++||+.++ .+| .|+.|.|.+
T Consensus 56 ~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~ 134 (578)
T TIGR01648 56 GRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCI 134 (578)
T ss_pred CCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccc
Confidence 44689999999999999999999999999999999999 689999999999999999999999998 455 466665543
Q ss_pred c
Q 023688 99 A 99 (278)
Q Consensus 99 A 99 (278)
+
T Consensus 135 S 135 (578)
T TIGR01648 135 S 135 (578)
T ss_pred c
Confidence 3
No 26
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=6.5e-15 Score=126.72 Aligned_cols=91 Identities=29% Similarity=0.439 Sum_probs=83.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
...+.++||||+|..+++|.-|...|-.||.|++|.++.|-++.+.|||+||+|+..|+|.+||..+| .+|.||.|+|+
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN 85 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVN 85 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEe
Confidence 34567899999999999999999999999999999999999999999999999999999999999999 68999999999
Q ss_pred EccCCCCCCCCC
Q 023688 98 LASLGAHKTRPP 109 (278)
Q Consensus 98 ~A~~~~~~~~~~ 109 (278)
+|++.+.+....
T Consensus 86 ~AkP~kikegsq 97 (298)
T KOG0111|consen 86 LAKPEKIKEGSQ 97 (298)
T ss_pred ecCCccccCCCC
Confidence 999876554443
No 27
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=6.1e-14 Score=117.95 Aligned_cols=80 Identities=24% Similarity=0.382 Sum_probs=70.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~A 99 (278)
...++|||+|||.++.|.+|+++|.+||.|.+|.+... -....||||+|++..+|+.||..-+. .++|.+|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35679999999999999999999999999999988543 23467999999999999999999884 699999999999
Q ss_pred cCCC
Q 023688 100 SLGA 103 (278)
Q Consensus 100 ~~~~ 103 (278)
....
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7654
No 28
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=3.4e-14 Score=125.54 Aligned_cols=85 Identities=38% Similarity=0.573 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~ 97 (278)
.......|||+.|..+++-|+||+.|.+||+|.+++|++|..|+++|||+||.|.++++|++||+.|+. -|.+|.|+-.
T Consensus 58 t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTN 137 (321)
T KOG0148|consen 58 TSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTN 137 (321)
T ss_pred ccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecc
Confidence 334466899999999999999999999999999999999999999999999999999999999999995 5899999999
Q ss_pred EccCCC
Q 023688 98 LASLGA 103 (278)
Q Consensus 98 ~A~~~~ 103 (278)
||..+.
T Consensus 138 WATRKp 143 (321)
T KOG0148|consen 138 WATRKP 143 (321)
T ss_pred ccccCc
Confidence 996443
No 29
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.51 E-value=1.2e-13 Score=134.98 Aligned_cols=82 Identities=27% Similarity=0.466 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+|||+.+++++|+++|+.||.|+.+.|++++.++.++|||||+|.+.++|.+||+.|+ ..|.|++|.|++|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 345799999999999999999999999999999999999999999999999999999999999999 5799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
...
T Consensus 373 ~~~ 375 (509)
T TIGR01642 373 CVG 375 (509)
T ss_pred ccC
Confidence 754
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.51 E-value=1e-13 Score=133.90 Aligned_cols=84 Identities=24% Similarity=0.403 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 98 (278)
.+...++|||+|||.++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||......|.|+.|.|.+
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPIIVQS 164 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeeeEEee
Confidence 34557899999999999999999999999999999999999999999999999999999999998655789999999998
Q ss_pred ccCC
Q 023688 99 ASLG 102 (278)
Q Consensus 99 A~~~ 102 (278)
+...
T Consensus 165 ~~~~ 168 (457)
T TIGR01622 165 SQAE 168 (457)
T ss_pred cchh
Confidence 7543
No 31
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=7.8e-14 Score=130.35 Aligned_cols=95 Identities=27% Similarity=0.413 Sum_probs=79.1
Q ss_pred CCcccCCCCCCC--CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHh
Q 023688 6 PLQMVGGNHPGD--YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83 (278)
Q Consensus 6 ~~~~~~g~~~~~--~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~ 83 (278)
.++..++..++- .....-+.||||.||.++.|++|..+|++.|+|-+++|++|+.+|.+||||||+|.++++|++||+
T Consensus 64 gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik 143 (506)
T KOG0117|consen 64 GQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIK 143 (506)
T ss_pred cccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHH
Confidence 344445555441 123457899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-Ccc-CCeeEEEEEcc
Q 023688 84 NPS-PVI-DGRRANCNLAS 100 (278)
Q Consensus 84 ~~~-~~i-~Gr~l~V~~A~ 100 (278)
.+| ++| .||.|.|..+.
T Consensus 144 ~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 144 ELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred HhhCccccCCCEeEEEEee
Confidence 999 565 68887665543
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=1.3e-13 Score=133.19 Aligned_cols=79 Identities=35% Similarity=0.624 Sum_probs=75.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASL 101 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~ 101 (278)
.++|||+||+.+++|++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.|+ ..|.|+.|+|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999 579999999999873
No 33
>smart00362 RRM_2 RNA recognition motif.
Probab=99.49 E-value=2e-13 Score=96.16 Aligned_cols=71 Identities=30% Similarity=0.579 Sum_probs=65.7
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 25 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
+|||+|||.++++++|+++|++||.|.++.+..++ +.++++|||+|.+.++|++|++.++ ..++|++|+|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999999876 7788999999999999999999988 67999998863
No 34
>PLN03213 repressor of silencing 3; Provisional
Probab=99.48 E-value=1.3e-13 Score=130.35 Aligned_cols=80 Identities=18% Similarity=0.321 Sum_probs=71.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCH--HHHHHHHhCCC-CccCCeeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP--EAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~--e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
......+||||||++++++++|+.+|..||.|.+|.|++ +|| ||||||+|.+. +++.+||..|+ .++.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 344567999999999999999999999999999999994 466 99999999987 68999999999 579999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|..|++.
T Consensus 82 VNKAKP~ 88 (759)
T PLN03213 82 LEKAKEH 88 (759)
T ss_pred EeeccHH
Confidence 9999853
No 35
>smart00360 RRM RNA recognition motif.
Probab=99.47 E-value=2.6e-13 Score=95.09 Aligned_cols=70 Identities=34% Similarity=0.629 Sum_probs=65.3
Q ss_pred EcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 28 VGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 28 VgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
|+|||+++++++|+++|++||.|.++.+..++.+++++++|||+|.+.++|.+|++.++ ..++|++|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 67999999999999999999999999999988789999999999999999999999998 67899998873
No 36
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.47 E-value=2.4e-13 Score=118.79 Aligned_cols=79 Identities=28% Similarity=0.609 Sum_probs=75.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASL 101 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~ 101 (278)
.++|||+||++++++++|+++|.+||.|..+.|..|+.+++++|||||+|.+.+++..|++.++ ..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5899999999999999999999999999999999999899999999999999999999999999 679999999999753
No 37
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.46 E-value=4e-13 Score=118.20 Aligned_cols=76 Identities=20% Similarity=0.149 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~ 100 (278)
...+|||+||++.++|++|+++|+.||+|.+|+|++|. +.++||||+|+++++++.||...+..|.++.|.|....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVLLSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHhcCCCeeCCceEEEEeCc
Confidence 45789999999999999999999999999999999984 45689999999999999999666688999999988764
No 38
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.45 E-value=8.5e-13 Score=121.24 Aligned_cols=87 Identities=31% Similarity=0.571 Sum_probs=80.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEccC
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASL 101 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~~ 101 (278)
..++|||++|+.+++|++|++.|++||.|.++.++.|+.+.+.+||+||+|++++++++++...-++|+++.|+|+.|.+
T Consensus 96 ~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 96 RTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred ceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecccceeeecCceeeEeeccc
Confidence 46699999999999999999999999999999999999999999999999999999999999888999999999999998
Q ss_pred CCCCCCC
Q 023688 102 GAHKTRP 108 (278)
Q Consensus 102 ~~~~~~~ 108 (278)
+......
T Consensus 176 k~~~~~~ 182 (311)
T KOG4205|consen 176 KEVMQST 182 (311)
T ss_pred hhhcccc
Confidence 7665443
No 39
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=1.6e-13 Score=131.01 Aligned_cols=84 Identities=32% Similarity=0.604 Sum_probs=79.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASLG 102 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~~ 102 (278)
+.|||||||++++||+|.++|+..|.|.+++++.|++||+.|||+|++|.+.+++++|++.+| .++.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999 6899999999999876
Q ss_pred CCCCC
Q 023688 103 AHKTR 107 (278)
Q Consensus 103 ~~~~~ 107 (278)
..+.+
T Consensus 99 ~~~~~ 103 (435)
T KOG0108|consen 99 KNAER 103 (435)
T ss_pred chhHH
Confidence 55433
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.41 E-value=2.5e-13 Score=124.69 Aligned_cols=84 Identities=40% Similarity=0.770 Sum_probs=79.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEccC
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASL 101 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~~ 101 (278)
+.++|||++|+|+++||.|++.|.+||+|.+|.|++|+.+++++||+||+|++.+.+.++|....+.|+|+.|+++.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 77899999999999999999999999999999999999999999999999999999999999888999999999999987
Q ss_pred CCCC
Q 023688 102 GAHK 105 (278)
Q Consensus 102 ~~~~ 105 (278)
+...
T Consensus 85 r~~~ 88 (311)
T KOG4205|consen 85 REDQ 88 (311)
T ss_pred cccc
Confidence 6543
No 41
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.41 E-value=2.1e-12 Score=91.36 Aligned_cols=73 Identities=32% Similarity=0.622 Sum_probs=66.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEE
Q 023688 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNL 98 (278)
Q Consensus 25 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~ 98 (278)
+|+|+|||+++++++|+++|+.+|.|.++.+..++.+ +.+++|||+|.+.++|..|++.++. .++|++|.|++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999988764 7789999999999999999999995 59999998864
No 42
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=1.2e-12 Score=105.07 Aligned_cols=88 Identities=24% Similarity=0.371 Sum_probs=81.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
+.+..+...-.|||.++..+.+|++|.+.|..||+|++|.+..|+.||-.|||++|+|++.++|.+|+..+| .+|.|..
T Consensus 64 pgPqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~ 143 (170)
T KOG0130|consen 64 PGPQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQN 143 (170)
T ss_pred CCCccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCc
Confidence 445566677899999999999999999999999999999999999999999999999999999999999999 5799999
Q ss_pred EEEEEccCC
Q 023688 94 ANCNLASLG 102 (278)
Q Consensus 94 l~V~~A~~~ 102 (278)
|.|.|+-.+
T Consensus 144 v~VDw~Fv~ 152 (170)
T KOG0130|consen 144 VSVDWCFVK 152 (170)
T ss_pred eeEEEEEec
Confidence 999999754
No 43
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.4e-12 Score=114.89 Aligned_cols=87 Identities=28% Similarity=0.439 Sum_probs=81.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V 96 (278)
..++..+.|.|.-||.++|+||||.+|...|+|++|++++||.+|.+.||+||.|.++++|++|+..+|. .|..+.|+|
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKV 115 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKV 115 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEE
Confidence 3566778999999999999999999999999999999999999999999999999999999999999995 699999999
Q ss_pred EEccCCCC
Q 023688 97 NLASLGAH 104 (278)
Q Consensus 97 ~~A~~~~~ 104 (278)
++|++...
T Consensus 116 SyARPSs~ 123 (360)
T KOG0145|consen 116 SYARPSSD 123 (360)
T ss_pred EeccCChh
Confidence 99987644
No 44
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=7e-14 Score=117.23 Aligned_cols=80 Identities=33% Similarity=0.588 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~A 99 (278)
.++--|||||||.+.||.+|.-+|++||+|++|-+++|+.||+|+||||+.|++..+..-|+..+|+ .|.||.|+|...
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4455799999999999999999999999999999999999999999999999999999999999995 699999999865
Q ss_pred c
Q 023688 100 S 100 (278)
Q Consensus 100 ~ 100 (278)
.
T Consensus 113 ~ 113 (219)
T KOG0126|consen 113 S 113 (219)
T ss_pred c
Confidence 4
No 45
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=2.9e-12 Score=122.41 Aligned_cols=86 Identities=35% Similarity=0.538 Sum_probs=77.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-----C--ccC
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-----P--VID 90 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-----~--~i~ 90 (278)
.++...++|||+|||++++|++|.++|++||+|..+.|+.|+.|+.++|.|||.|.+..++.+||+.-. . .|+
T Consensus 287 en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~ 366 (678)
T KOG0127|consen 287 ENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLD 366 (678)
T ss_pred ccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEe
Confidence 344556899999999999999999999999999999999999999999999999999999999999872 2 489
Q ss_pred CeeEEEEEccCCC
Q 023688 91 GRRANCNLASLGA 103 (278)
Q Consensus 91 Gr~l~V~~A~~~~ 103 (278)
||.|.|.+|..+.
T Consensus 367 GR~Lkv~~Av~Rk 379 (678)
T KOG0127|consen 367 GRLLKVTLAVTRK 379 (678)
T ss_pred ccEEeeeeccchH
Confidence 9999999997654
No 46
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.36 E-value=1e-12 Score=110.29 Aligned_cols=80 Identities=26% Similarity=0.389 Sum_probs=75.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
....+|||+||+..++|+.|.++|-+.|.|.++.|++|+.+...+|||||+|.++|+|+-||+.++ -.|-||+|+|+.+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 345689999999999999999999999999999999999999999999999999999999999999 4699999999999
Q ss_pred c
Q 023688 100 S 100 (278)
Q Consensus 100 ~ 100 (278)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 7
No 47
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.36 E-value=3.7e-12 Score=124.44 Aligned_cols=78 Identities=17% Similarity=0.210 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 20 DTTFTKIFVGGLAW-ETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 20 ~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
....++|||+||++ .+++++|+++|+.||.|++|+|++++ +|||||+|.+.++|++||+.|+ ..|+|++|+|+
T Consensus 272 ~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 272 GGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 34668999999998 69999999999999999999999873 6899999999999999999999 57999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
+++.+
T Consensus 347 ~s~~~ 351 (481)
T TIGR01649 347 PSKQQ 351 (481)
T ss_pred Ecccc
Confidence 98654
No 48
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.35 E-value=1.2e-12 Score=116.77 Aligned_cols=71 Identities=32% Similarity=0.592 Sum_probs=67.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEEccCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNLASLG 102 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~A~~~ 102 (278)
.+|||||||.++++.+|+.+|++||+|++|.|+++ |+||+.+++..++.||..|++ +|+|..|+|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 47999999999999999999999999999999976 999999999999999999996 699999999988876
No 49
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.35 E-value=4e-12 Score=124.19 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=67.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC--C-CccCCeeEEEEEc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP--S-PVIDGRRANCNLA 99 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~--~-~~i~Gr~l~V~~A 99 (278)
++.|||+|||++++|++|+++|++||.|++|+|+++ |+||||+|++.++|++||+.+ + ..|+|+.|.|.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~------k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG------KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC------CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 578999999999999999999999999999999864 579999999999999999864 3 5799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
..+
T Consensus 76 ~~~ 78 (481)
T TIGR01649 76 TSQ 78 (481)
T ss_pred CCc
Confidence 654
No 50
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.34 E-value=7.5e-12 Score=116.98 Aligned_cols=83 Identities=19% Similarity=0.390 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHH-hhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F-~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
....+.+||.|||.++.+.+||++| ++.|+|+.|+++.|. ++++|||+.|+|+++|.++||++.|+ ++++||.|.|+
T Consensus 41 ~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vK 119 (608)
T KOG4212|consen 41 AARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVK 119 (608)
T ss_pred ccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEe
Confidence 3456679999999999999999999 689999999999996 59999999999999999999999999 68999999999
Q ss_pred EccCCC
Q 023688 98 LASLGA 103 (278)
Q Consensus 98 ~A~~~~ 103 (278)
......
T Consensus 120 Ed~d~q 125 (608)
T KOG4212|consen 120 EDHDEQ 125 (608)
T ss_pred ccCchh
Confidence 876543
No 51
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.33 E-value=1.6e-11 Score=116.85 Aligned_cols=87 Identities=25% Similarity=0.372 Sum_probs=73.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEcc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLAS 100 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~ 100 (278)
.....|||+|||.++++++|+++|.+||.|++..|......++..+||||+|++.++++.||+...-.|++++|.|+..+
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKLNVEEKR 365 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcCccccCCeeEEEEecc
Confidence 33456999999999999999999999999999988775433555699999999999999999998667999999999987
Q ss_pred CCCCCCC
Q 023688 101 LGAHKTR 107 (278)
Q Consensus 101 ~~~~~~~ 107 (278)
......+
T Consensus 366 ~~~~g~~ 372 (419)
T KOG0116|consen 366 PGFRGNG 372 (419)
T ss_pred ccccccc
Confidence 7654433
No 52
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.32 E-value=5.3e-12 Score=120.68 Aligned_cols=83 Identities=25% Similarity=0.468 Sum_probs=75.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
+...-+|.|+||||.|.+.+|+.+|+.||.|.+|.|++.++ ++-+|||||.|.+..+|++||+.+| ++|+||.|-|.|
T Consensus 114 ~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d-gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 114 DLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD-GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC-CCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 34467899999999999999999999999999999998776 6666999999999999999999999 789999999999
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
|-.+.
T Consensus 193 AV~Kd 197 (678)
T KOG0127|consen 193 AVDKD 197 (678)
T ss_pred ecccc
Confidence 97653
No 53
>smart00361 RRM_1 RNA recognition motif.
Probab=99.29 E-value=1.1e-11 Score=89.82 Aligned_cols=61 Identities=26% Similarity=0.450 Sum_probs=54.6
Q ss_pred HHHHHHHHh----hCCCEEEEE-EeeCCCC--CCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 37 RDTMRRYFE----QFGEILEAV-VITDKNT--GRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 37 ee~L~~~F~----~~G~I~~v~-i~~d~~t--g~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
+++|+++|+ +||.|.+|. |+.++.+ ++++||+||+|.+.++|.+|++.|+ ..++|+.|+|.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 678889998 999999995 7777767 8999999999999999999999999 67999999863
No 54
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=4.2e-12 Score=112.28 Aligned_cols=84 Identities=30% Similarity=0.453 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC--ccCC--eeEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP--VIDG--RRANC 96 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~--~i~G--r~l~V 96 (278)
.+.+|||||.|.+.-.|||++++|..||+|++|.+++..+ |.+|||+||+|.+..+|..||..|+. .+-| ..|.|
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d-g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVV 95 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD-GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVV 95 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC-CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEE
Confidence 3678999999999999999999999999999999999886 99999999999999999999999983 4554 57899
Q ss_pred EEccCCCCC
Q 023688 97 NLASLGAHK 105 (278)
Q Consensus 97 ~~A~~~~~~ 105 (278)
++|+.++++
T Consensus 96 K~ADTdkER 104 (371)
T KOG0146|consen 96 KFADTDKER 104 (371)
T ss_pred EeccchHHH
Confidence 999876544
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=5.8e-12 Score=111.40 Aligned_cols=86 Identities=28% Similarity=0.384 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V 96 (278)
.+-.+.|+|||-.||.+..+.||.+.|-.||.|.+.+|..|+.|+.+|+|+||.|++..++..||..+|+ .|.-|+|+|
T Consensus 280 reGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKV 359 (371)
T KOG0146|consen 280 REGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKV 359 (371)
T ss_pred hcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhh
Confidence 3556789999999999999999999999999999999999999999999999999999999999999996 599999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
.+.+++.
T Consensus 360 QLKRPkd 366 (371)
T KOG0146|consen 360 QLKRPKD 366 (371)
T ss_pred hhcCccc
Confidence 9987654
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=3.7e-11 Score=92.39 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~ 97 (278)
..+..+.|||.|||+++|.|++.++|.+||.|..|+|-..+. .+|-|||.|++..+|++||+.|.. .++++.|.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 445567899999999999999999999999999999987655 489999999999999999999995 5999999887
Q ss_pred EccC
Q 023688 98 LASL 101 (278)
Q Consensus 98 ~A~~ 101 (278)
+-.+
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 6544
No 57
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.5e-11 Score=112.36 Aligned_cols=90 Identities=28% Similarity=0.453 Sum_probs=81.7
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccC
Q 023688 12 GNHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VID 90 (278)
Q Consensus 12 g~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~ 90 (278)
|..+......+...|||-.|.+.+++|+|.-+|+.||.|..|.||+|..||.+..||||+|++.+++++|.-.|.. .|+
T Consensus 228 GDlpdAd~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID 307 (479)
T KOG0415|consen 228 GDLPDADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID 307 (479)
T ss_pred cCCcccccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec
Confidence 4455556667788999999999999999999999999999999999999999999999999999999999998884 699
Q ss_pred CeeEEEEEccC
Q 023688 91 GRRANCNLASL 101 (278)
Q Consensus 91 Gr~l~V~~A~~ 101 (278)
.++|.|.++..
T Consensus 308 DrRIHVDFSQS 318 (479)
T KOG0415|consen 308 DRRIHVDFSQS 318 (479)
T ss_pred cceEEeehhhh
Confidence 99999998754
No 58
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.23 E-value=4.3e-11 Score=105.62 Aligned_cols=84 Identities=24% Similarity=0.317 Sum_probs=77.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~ 97 (278)
.+.....|||-||.++++|.-|.++|..||.|..|+|++|..|.++|||+||++.+-++|..||..+|. .+.+|.|.|.
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVs 353 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVS 353 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEE
Confidence 344467899999999999999999999999999999999999999999999999999999999999995 6999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
+...+
T Consensus 354 FKtnk 358 (360)
T KOG0145|consen 354 FKTNK 358 (360)
T ss_pred EecCC
Confidence 87643
No 59
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.22 E-value=1.8e-11 Score=102.76 Aligned_cols=81 Identities=25% Similarity=0.406 Sum_probs=74.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..+|||+||.++++|..|.+.|+.||.|... +|++|..|+.+++|+||.|++.|.+.+|++.++ ..++.++|.|.++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~ 175 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAF 175 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEE
Confidence 4689999999999999999999999998764 889999999999999999999999999999999 56899999999997
Q ss_pred CCC
Q 023688 101 LGA 103 (278)
Q Consensus 101 ~~~ 103 (278)
.+.
T Consensus 176 k~~ 178 (203)
T KOG0131|consen 176 KKD 178 (203)
T ss_pred ecC
Confidence 553
No 60
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.19 E-value=6.1e-11 Score=81.84 Aligned_cols=55 Identities=27% Similarity=0.555 Sum_probs=49.1
Q ss_pred HHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 40 MRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 40 L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
|+++|++||+|+++.+..++ +++|||+|.+.++|++|++.++ ..++|++|+|++|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997653 6899999999999999999998 5799999999986
No 61
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.18 E-value=1e-10 Score=104.60 Aligned_cols=78 Identities=26% Similarity=0.500 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.++..+||+|+||.+.|+..||++.|++||.|.+|+|++| |+||+|+-.++|..|++.|+ .+|+|++++|.
T Consensus 74 Ksk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 74 KSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred cCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhcccccccccceeeee
Confidence 4567889999999999999999999999999999999976 99999999999999999998 68999999999
Q ss_pred EccCCCC
Q 023688 98 LASLGAH 104 (278)
Q Consensus 98 ~A~~~~~ 104 (278)
++..+.+
T Consensus 146 ~stsrlr 152 (346)
T KOG0109|consen 146 LSTSRLR 152 (346)
T ss_pred eeccccc
Confidence 9976543
No 62
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.16 E-value=3.1e-11 Score=115.66 Aligned_cols=80 Identities=33% Similarity=0.613 Sum_probs=73.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEEccC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNLASL 101 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~A~~ 101 (278)
..+||||||.++++|++|+.+|+.||.|..|.+.+|.+||.+|||+||+|.+.++|++|++.+|. +|-|+.|+|..-..
T Consensus 278 ~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 278 MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 33499999999999999999999999999999999999999999999999999999999999995 79999999887654
Q ss_pred C
Q 023688 102 G 102 (278)
Q Consensus 102 ~ 102 (278)
+
T Consensus 358 r 358 (549)
T KOG0147|consen 358 R 358 (549)
T ss_pred e
Confidence 3
No 63
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.14 E-value=1.3e-10 Score=106.17 Aligned_cols=80 Identities=33% Similarity=0.489 Sum_probs=72.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC--CccCCee
Q 023688 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS--PVIDGRR 93 (278)
Q Consensus 16 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~--~~i~Gr~ 93 (278)
...+|...++|||++|...++|.+|+++|.+||+|+.+++... ++||||+|.++++|+.|.++.. .+|+|++
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~R 294 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFR 294 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceE
Confidence 4568888999999999999999999999999999999999875 3599999999999999998765 3699999
Q ss_pred EEEEEccC
Q 023688 94 ANCNLASL 101 (278)
Q Consensus 94 l~V~~A~~ 101 (278)
|.|.|.++
T Consensus 295 l~i~Wg~~ 302 (377)
T KOG0153|consen 295 LKIKWGRP 302 (377)
T ss_pred EEEEeCCC
Confidence 99999976
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.11 E-value=4.8e-11 Score=109.52 Aligned_cols=77 Identities=32% Similarity=0.611 Sum_probs=72.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEEc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNLA 99 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~A 99 (278)
.|+||||.|.+++.|+.||..|..||.|++|.+-.|+.|++.|||+||+|+-+|.|.-|++.+|. .+.||.|+|.+-
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrP 190 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 190 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCC
Confidence 57999999999999999999999999999999999999999999999999999999999999995 689999888744
No 65
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=2.4e-10 Score=107.95 Aligned_cols=78 Identities=31% Similarity=0.563 Sum_probs=71.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEEccCCCC
Q 023688 26 IFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNLASLGAH 104 (278)
Q Consensus 26 lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~A~~~~~ 104 (278)
|||.||+++++.++|.++|+.||+|++|+|.+|.. | +||| ||+|+++++|++||+.+|. .+.+++|.|-+...+..
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~-g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN-G-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEE 155 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC-C-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhh
Confidence 99999999999999999999999999999999975 5 9999 9999999999999999995 58999999988876554
Q ss_pred CC
Q 023688 105 KT 106 (278)
Q Consensus 105 ~~ 106 (278)
+.
T Consensus 156 r~ 157 (369)
T KOG0123|consen 156 RE 157 (369)
T ss_pred hc
Confidence 43
No 66
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.05 E-value=3.4e-10 Score=112.16 Aligned_cols=78 Identities=22% Similarity=0.367 Sum_probs=70.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
.-+++||||+|+.+++|.+|+.+|+.||+|.+|.++.. ++||||++..+.+|++||.+|+ ..+.++.|+|.||
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa 492 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWA 492 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeee
Confidence 34789999999999999999999999999999988753 6799999999999999999998 5699999999999
Q ss_pred cCCCC
Q 023688 100 SLGAH 104 (278)
Q Consensus 100 ~~~~~ 104 (278)
..+--
T Consensus 493 ~g~G~ 497 (894)
T KOG0132|consen 493 VGKGP 497 (894)
T ss_pred ccCCc
Confidence 76543
No 67
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.05 E-value=9.9e-10 Score=107.48 Aligned_cols=76 Identities=14% Similarity=0.282 Sum_probs=60.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhC------------CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQF------------GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~------------G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~ 85 (278)
..+...++|||+|||+++++++|+++|..+ +.|..+.+ .+.+|||||+|.+.++|.+||. |
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~------~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI------NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE------CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 355667899999999999999999999875 23333333 4568899999999999999995 6
Q ss_pred C-CccCCeeEEEEEcc
Q 023688 86 S-PVIDGRRANCNLAS 100 (278)
Q Consensus 86 ~-~~i~Gr~l~V~~A~ 100 (278)
+ ..|.|+.|+|....
T Consensus 243 ~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPH 258 (509)
T ss_pred CCeEeeCceeEecCcc
Confidence 6 57999999887543
No 68
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.99 E-value=1.7e-09 Score=104.23 Aligned_cols=86 Identities=22% Similarity=0.406 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|||.+|...+...+|+.+|++||+|+-.+|+++..+--.++|+||++.+.++|.+||+.|+ .+|.|+.|.|+
T Consensus 401 rs~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVE 480 (940)
T KOG4661|consen 401 RSTLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVE 480 (940)
T ss_pred ccccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeee
Confidence 34457899999999999999999999999999999999987777779999999999999999999999 68999999999
Q ss_pred EccCCCC
Q 023688 98 LASLGAH 104 (278)
Q Consensus 98 ~A~~~~~ 104 (278)
.++....
T Consensus 481 kaKNEp~ 487 (940)
T KOG4661|consen 481 KAKNEPG 487 (940)
T ss_pred ecccCcc
Confidence 9986643
No 69
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.96 E-value=2.4e-09 Score=91.77 Aligned_cols=85 Identities=24% Similarity=0.382 Sum_probs=75.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRAN 95 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~ 95 (278)
..+....-++|..||..+.|.+|..+|.+| |.++++++-+++.||.+||||||+|++++.|+-|-+.||. .|.++.|.
T Consensus 44 p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 44 PEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred CccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 344556679999999999999999999888 7788888889999999999999999999999999999995 58899999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|.+-.++
T Consensus 124 c~vmppe 130 (214)
T KOG4208|consen 124 CHVMPPE 130 (214)
T ss_pred eEEeCch
Confidence 9998765
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.95 E-value=1.6e-09 Score=99.61 Aligned_cols=83 Identities=19% Similarity=0.382 Sum_probs=76.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
-+...+|||..+.++.+|+||+.+|+.||+|++|.+-+++.++..|||+||+|.+..+...||..+| -.|.|..|+|-.
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk 286 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGK 286 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccc
Confidence 3457899999999999999999999999999999999999888999999999999999999999999 579999999987
Q ss_pred ccCC
Q 023688 99 ASLG 102 (278)
Q Consensus 99 A~~~ 102 (278)
+...
T Consensus 287 ~vTP 290 (544)
T KOG0124|consen 287 CVTP 290 (544)
T ss_pred ccCC
Confidence 7543
No 71
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.95 E-value=2.5e-09 Score=92.81 Aligned_cols=79 Identities=27% Similarity=0.447 Sum_probs=71.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHH----HHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEE
Q 023688 22 TFTKIFVGGLAWETQRDTMRR----YFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANC 96 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~----~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V 96 (278)
+..+|||.||++.+..++|++ +|++||+|.+|...+ |.+.||-|||.|.+.+.|..|++.+++ .+-|+.++|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 344999999999999999998 999999999998775 578999999999999999999999996 489999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
.+|+.+.
T Consensus 85 qyA~s~s 91 (221)
T KOG4206|consen 85 QYAKSDS 91 (221)
T ss_pred ecccCcc
Confidence 9998654
No 72
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.87 E-value=8.9e-09 Score=91.56 Aligned_cols=85 Identities=29% Similarity=0.449 Sum_probs=76.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~ 97 (278)
.+....+|+|.||+..|++++|+++|+.||.++.+.|..|+ .|++.|.|-|.|...++|++|++.++. .++|+.+++.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 55566899999999999999999999999999999999987 599999999999999999999999995 5999999988
Q ss_pred EccCCCC
Q 023688 98 LASLGAH 104 (278)
Q Consensus 98 ~A~~~~~ 104 (278)
+......
T Consensus 158 ~i~~~~~ 164 (243)
T KOG0533|consen 158 IISSPSQ 164 (243)
T ss_pred EecCccc
Confidence 8765433
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.87 E-value=5.1e-09 Score=103.12 Aligned_cols=78 Identities=29% Similarity=0.542 Sum_probs=69.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTG---RSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg---~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
.++|||.||+++++.++|+.+|.+.|.|+.+.|.+.++.. -|.|||||+|.+.++|++|++.|+ ++|+|+.|.|++
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 3449999999999999999999999999999998766422 245999999999999999999999 789999999999
Q ss_pred cc
Q 023688 99 AS 100 (278)
Q Consensus 99 A~ 100 (278)
+.
T Consensus 595 S~ 596 (725)
T KOG0110|consen 595 SE 596 (725)
T ss_pred cc
Confidence 97
No 74
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.85 E-value=2e-09 Score=105.97 Aligned_cols=84 Identities=26% Similarity=0.453 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.+...++|+|.|||+..+..+++++|..||.|+.|+|+.....+.++|||||+|-++.+|.+|++.|. .-|.||+|.++
T Consensus 609 ~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLE 688 (725)
T KOG0110|consen 609 KKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLE 688 (725)
T ss_pred cccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhhee
Confidence 33446799999999999999999999999999999999876667789999999999999999999988 45999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
||+..
T Consensus 689 wA~~d 693 (725)
T KOG0110|consen 689 WAKSD 693 (725)
T ss_pred hhccc
Confidence 99764
No 75
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=8e-09 Score=97.70 Aligned_cols=73 Identities=26% Similarity=0.425 Sum_probs=68.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASLG 102 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~~ 102 (278)
..|||| ++++|+.|.++|+.+|.|+.++|.+|. | +-|||||.|.++++|++||+.+| ..|.|++|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 368999 999999999999999999999999998 6 99999999999999999999999 5799999999998644
No 76
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.83 E-value=5.8e-09 Score=97.90 Aligned_cols=76 Identities=29% Similarity=0.503 Sum_probs=67.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....|.|||+|||.++|+..||+-|..||.|+.++|+. .+++|| .|.|.++++|++||..++ ..|+||.|+|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~ 606 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVT 606 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeee
Confidence 445678899999999999999999999999999999854 488887 899999999999999999 57999999998
Q ss_pred Ec
Q 023688 98 LA 99 (278)
Q Consensus 98 ~A 99 (278)
+.
T Consensus 607 y~ 608 (608)
T KOG4212|consen 607 YF 608 (608)
T ss_pred eC
Confidence 63
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.82 E-value=2.5e-09 Score=94.24 Aligned_cols=83 Identities=36% Similarity=0.564 Sum_probs=74.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
+.++...+||+|.|..+++++.|-+.|.+|-.....++++|+.|++++||+||.|.+..++.+|+++++ +.++.+.|++
T Consensus 185 ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpikl 264 (290)
T KOG0226|consen 185 EWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKL 264 (290)
T ss_pred cCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHh
Confidence 455667899999999999999999999999999999999999999999999999999999999999999 5688888776
Q ss_pred EEcc
Q 023688 97 NLAS 100 (278)
Q Consensus 97 ~~A~ 100 (278)
+...
T Consensus 265 RkS~ 268 (290)
T KOG0226|consen 265 RKSE 268 (290)
T ss_pred hhhh
Confidence 6543
No 78
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.74 E-value=1.8e-08 Score=89.37 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=78.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...+.+.+.+||+|+...++.++++.+|+.||.|..+.|+.|+.++.+|||+||+|.+.+.++++++ ++ ..|.++.++
T Consensus 95 ~~~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~ 173 (231)
T KOG4209|consen 95 RQKEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIE 173 (231)
T ss_pred hhhccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccce
Confidence 3567778899999999999999999999999999999999999988999999999999999999999 66 689999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|.+.+..
T Consensus 174 vt~~r~~ 180 (231)
T KOG4209|consen 174 VTLKRTN 180 (231)
T ss_pred eeeeeee
Confidence 9988654
No 79
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.72 E-value=1e-07 Score=82.76 Aligned_cols=89 Identities=21% Similarity=0.316 Sum_probs=70.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHhCCCCc-c---CCee
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVI-TDKNTGRSKGYGFVTFKDPEAAMRACQNPSPV-I---DGRR 93 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~-~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~-i---~Gr~ 93 (278)
+....++|||.+||.++.-.||..+|..|-.-+.+.|. .++.....+-++||+|.+..+|.+|+..+|++ | .+..
T Consensus 30 ~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 30 EPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 33458999999999999999999999988666655443 33333345689999999999999999999953 4 4788
Q ss_pred EEEEEccCCCCCCC
Q 023688 94 ANCNLASLGAHKTR 107 (278)
Q Consensus 94 l~V~~A~~~~~~~~ 107 (278)
|+|++|+...+.++
T Consensus 110 LhiElAKSNtK~kr 123 (284)
T KOG1457|consen 110 LHIELAKSNTKRKR 123 (284)
T ss_pred eEeeehhcCccccc
Confidence 99999987655443
No 80
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.59 E-value=1.8e-07 Score=89.16 Aligned_cols=79 Identities=20% Similarity=0.367 Sum_probs=67.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 98 (278)
+..+..-|-+++|||++|++||.+||+.++ |+++++.++ +|+..|-|||+|.++|++++||++....+..|-|+|-.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFT 82 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEc
Confidence 344556788899999999999999999884 778666654 69999999999999999999999887778889999887
Q ss_pred cc
Q 023688 99 AS 100 (278)
Q Consensus 99 A~ 100 (278)
+.
T Consensus 83 ~~ 84 (510)
T KOG4211|consen 83 AG 84 (510)
T ss_pred cC
Confidence 73
No 81
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=5.3e-08 Score=93.87 Aligned_cols=73 Identities=30% Similarity=0.368 Sum_probs=64.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
..+...++|+|-|||..|++++|+++|+.||+|++|+.- -..++.+||+|-|..+|++|+++++ .+|.|++|.
T Consensus 70 ~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t-----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 70 EKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET-----PNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc-----cccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 346678899999999999999999999999999996543 4457899999999999999999999 578998877
No 82
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.53 E-value=3.8e-08 Score=85.17 Aligned_cols=79 Identities=13% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~A 99 (278)
+..++|||+||-..++||.|.++|-+-|.|.+|.|..+++ ++.| ||||.|+++.++.-|++.+|. .+.++.|.|++-
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD-QEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc-CCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 4457899999999999999999999999999999998876 6667 999999999999999999995 588888887776
Q ss_pred cC
Q 023688 100 SL 101 (278)
Q Consensus 100 ~~ 101 (278)
..
T Consensus 85 ~G 86 (267)
T KOG4454|consen 85 CG 86 (267)
T ss_pred cC
Confidence 53
No 83
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.53 E-value=1.2e-07 Score=82.91 Aligned_cols=70 Identities=27% Similarity=0.578 Sum_probs=62.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASL 101 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~ 101 (278)
.+|||++|++.+.+++|++||..||.|.+|.+. .||+||+|++..+|..||..++ ++|.+.++.|++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 479999999999999999999999999998775 3589999999999999999999 678888888888864
No 84
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.50 E-value=5.2e-07 Score=82.73 Aligned_cols=85 Identities=18% Similarity=0.306 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI 89 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~--------~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i 89 (278)
+....+.|||.|||.++|.+++.++|+++|.|. +|+|-++.. |+.||=|.+.|-.+++++-||+.|+ ..|
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~ 208 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDEL 208 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccc
Confidence 455677899999999999999999999999875 467777765 9999999999999999999999999 579
Q ss_pred CCeeEEEEEccCCCC
Q 023688 90 DGRRANCNLASLGAH 104 (278)
Q Consensus 90 ~Gr~l~V~~A~~~~~ 104 (278)
.|+.|+|+.|+-..+
T Consensus 209 rg~~~rVerAkfq~K 223 (382)
T KOG1548|consen 209 RGKKLRVERAKFQMK 223 (382)
T ss_pred cCcEEEEehhhhhhc
Confidence 999999999975443
No 85
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.43 E-value=1.4e-06 Score=83.12 Aligned_cols=80 Identities=20% Similarity=0.282 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~-v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A 99 (278)
.....|-+++||+.|+|+||.+||+..-.+.+ |.++.|+. +++.|-|||.|++.+.|++||......|.-|-|+|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r-gR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR-GRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC-CCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehh
Confidence 45567889999999999999999988755555 45666664 88999999999999999999999888899999999887
Q ss_pred cC
Q 023688 100 SL 101 (278)
Q Consensus 100 ~~ 101 (278)
..
T Consensus 180 s~ 181 (510)
T KOG4211|consen 180 SR 181 (510)
T ss_pred HH
Confidence 54
No 86
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.39 E-value=2e-06 Score=66.31 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=66.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhh--CCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-cc----CCeeEEE
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VI----DGRRANC 96 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~--~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i----~Gr~l~V 96 (278)
++|-|+|||...+.++|.+++.. .|....+-++.|..++.+.|||||.|.+.+.|.+-.+..++ .+ ..+.++|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999999954 36777888999998899999999999999999998888773 22 3566788
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
.+|+..
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 888643
No 87
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.35 E-value=1.8e-06 Score=79.72 Aligned_cols=86 Identities=28% Similarity=0.310 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Cc
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PV 88 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~--------~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~ 88 (278)
......-+|||-+|+..+++++|.++|.+++.|+ +|+|-+|++|++.|+-|.|+|++...|+.|++.++ ..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 3456667999999999999999999999999886 46777899999999999999999999999999999 67
Q ss_pred cCCeeEEEEEccCCC
Q 023688 89 IDGRRANCNLASLGA 103 (278)
Q Consensus 89 i~Gr~l~V~~A~~~~ 103 (278)
+.+..|+|.+|..+.
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999997655
No 88
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.34 E-value=9.2e-07 Score=87.49 Aligned_cols=85 Identities=21% Similarity=0.355 Sum_probs=73.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCC---CCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCe
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDK---NTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGR 92 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~---~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr 92 (278)
+..|...++|||+||++.++|+.|-..|.+||.|..|+|+..+ +..+.+-|+||.|-++.+|++|++.|+. .+...
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 3456778999999999999999999999999999999998643 2344567999999999999999999994 58888
Q ss_pred eEEEEEccC
Q 023688 93 RANCNLASL 101 (278)
Q Consensus 93 ~l~V~~A~~ 101 (278)
.+++-|++.
T Consensus 248 e~K~gWgk~ 256 (877)
T KOG0151|consen 248 EMKLGWGKA 256 (877)
T ss_pred eeeeccccc
Confidence 888888853
No 89
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.23 E-value=1.6e-06 Score=79.45 Aligned_cols=81 Identities=28% Similarity=0.437 Sum_probs=72.2
Q ss_pred CcEEE-EcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 23 FTKIF-VGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 23 ~~~lf-VgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..++| |++|+.++++++|+.+|..+|.|..+++..+..++.++||++|.|.+......++.. . +.+.++.+.+....
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDE 262 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCC
Confidence 44555 999999999999999999999999999999999999999999999999999999988 5 67899999888876
Q ss_pred CCCC
Q 023688 101 LGAH 104 (278)
Q Consensus 101 ~~~~ 104 (278)
....
T Consensus 263 ~~~~ 266 (285)
T KOG4210|consen 263 PRPK 266 (285)
T ss_pred CCcc
Confidence 5433
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.13 E-value=4.1e-06 Score=81.37 Aligned_cols=88 Identities=26% Similarity=0.444 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V 96 (278)
......++|||++||..+++++++++++.||.++...++.|..++-+|||||.+|.+......||..+|+ .+.+++|.|
T Consensus 284 ~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 284 DVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred CcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 3445567999999999999999999999999999999999999999999999999999999999999995 588899999
Q ss_pred EEccCCCCC
Q 023688 97 NLASLGAHK 105 (278)
Q Consensus 97 ~~A~~~~~~ 105 (278)
..|......
T Consensus 364 q~A~~g~~~ 372 (500)
T KOG0120|consen 364 QRAIVGASN 372 (500)
T ss_pred ehhhccchh
Confidence 999866543
No 91
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.00 E-value=0.001 Score=61.59 Aligned_cols=74 Identities=19% Similarity=0.397 Sum_probs=63.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
+-....+|||||-|++|+++|.+.+..-| .|.++++..++.+|.+||||+|...+..++++.++.|. ++|.|..
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 33455799999999999999999887665 67778888888889999999999999999999999988 5687764
No 92
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.98 E-value=2e-06 Score=83.10 Aligned_cols=85 Identities=21% Similarity=0.329 Sum_probs=75.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 98 (278)
++.+.++||+--|...+++.+|.+||+.+|.|.+|.||.|+.++++||.++|+|.|.+.+..||......+.|..|.|..
T Consensus 175 eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 175 EERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVPVIVQL 254 (549)
T ss_pred hHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhhhcCCcccCceeEecc
Confidence 44556789999999999999999999999999999999999999999999999999999999997666778999999987
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
..-.+
T Consensus 255 sEaek 259 (549)
T KOG0147|consen 255 SEAEK 259 (549)
T ss_pred cHHHH
Confidence 65443
No 93
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.91 E-value=2e-05 Score=61.73 Aligned_cols=69 Identities=29% Similarity=0.464 Sum_probs=43.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-C-----ccCCeeEEEE
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-P-----VIDGRRANCN 97 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~-----~i~Gr~l~V~ 97 (278)
+.|.|.++...++.++|+++|+.||.|..|.+..... -|+|.|.+.+.|++|++.+. . .|.+..+.++
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~------~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT------EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S------EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC------EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 4688999999999999999999999999998876532 79999999999999987654 2 3666666555
Q ss_pred E
Q 023688 98 L 98 (278)
Q Consensus 98 ~ 98 (278)
+
T Consensus 76 v 76 (105)
T PF08777_consen 76 V 76 (105)
T ss_dssp -
T ss_pred E
Confidence 4
No 94
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=97.86 E-value=1.2e-05 Score=70.10 Aligned_cols=62 Identities=13% Similarity=0.237 Sum_probs=50.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP 87 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~ 87 (278)
-..+|||.||..+|+|++||.+|+.|-....++|... ..-..+||+|++.+.|..|+..+.+
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg 270 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQG 270 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhc
Confidence 3568999999999999999999999987766666432 1235899999999999999987763
No 95
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.79 E-value=7.2e-05 Score=55.80 Aligned_cols=68 Identities=19% Similarity=0.330 Sum_probs=46.9
Q ss_pred cEEEEcCCCCCCCHH----HHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEE
Q 023688 24 TKIFVGGLAWETQRD----TMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCN 97 (278)
Q Consensus 24 ~~lfVgnLp~~~tee----~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~ 97 (278)
..|+|.|||.+.+-. .|+++++-+| .|.+| +.+-|+|.|.+.+.|++|++.++. .+-|++|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 469999999999865 4667777775 55554 135899999999999999999995 5899999999
Q ss_pred EccC
Q 023688 98 LASL 101 (278)
Q Consensus 98 ~A~~ 101 (278)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8843
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=2.6e-05 Score=68.31 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=63.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....+.|+|.+|..++.+.+|+++|+.+|.+....+ .++++||+|.+.+++.+||+.++ .++.+++|.+.
T Consensus 95 p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~ 166 (216)
T KOG0106|consen 95 PSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVE 166 (216)
T ss_pred cccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeec
Confidence 3566789999999999999999999999999955444 35699999999999999999999 57999999995
Q ss_pred Ecc
Q 023688 98 LAS 100 (278)
Q Consensus 98 ~A~ 100 (278)
...
T Consensus 167 ~~~ 169 (216)
T KOG0106|consen 167 KNS 169 (216)
T ss_pred ccC
Confidence 543
No 97
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00011 Score=70.93 Aligned_cols=95 Identities=24% Similarity=0.308 Sum_probs=73.0
Q ss_pred CCCCcccCCCCC--CCCCCCCCcEEEEcCCCCCCCHHHHHHHHh-hCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHH
Q 023688 4 QRPLQMVGGNHP--GDYNDTTFTKIFVGGLAWETQRDTMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMR 80 (278)
Q Consensus 4 ~~~~~~~~g~~~--~~~~~~~~~~lfVgnLp~~~tee~L~~~F~-~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~ 80 (278)
.+++.+.++..- ....-+..++||||+||.-++.++|-.+|+ -||.|.-+-|-.|++-+-.||-|-|+|.+..+-.+
T Consensus 349 IrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~ 428 (520)
T KOG0129|consen 349 IRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIK 428 (520)
T ss_pred EEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHH
Confidence 445555444322 223445678999999999999999999997 79999999999997778899999999999999999
Q ss_pred HHhCCC----C-ccCCeeEEEEEc
Q 023688 81 ACQNPS----P-VIDGRRANCNLA 99 (278)
Q Consensus 81 Al~~~~----~-~i~Gr~l~V~~A 99 (278)
||..-. + +| .|+|+|+--
T Consensus 429 AIsarFvql~h~d~-~KRVEIkPY 451 (520)
T KOG0129|consen 429 AISARFVQLDHTDI-DKRVEIKPY 451 (520)
T ss_pred HHhhheEEEecccc-ceeeeecce
Confidence 998643 2 23 336666543
No 98
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.71 E-value=4.1e-05 Score=72.25 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=59.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeC---CCC--CC--------cccEEEEEeCCHHHHHHHHhC
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITD---KNT--GR--------SKGYGFVTFKDPEAAMRACQN 84 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d---~~t--g~--------skG~aFV~F~~~e~A~~Al~~ 84 (278)
.++.+.++|.+-|||.+-.-+.|.++|..+|.|+.|+|+.- +.. +. .+-||||+|++.+.|.+|.+.
T Consensus 226 ~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~ 305 (484)
T KOG1855|consen 226 EEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAREL 305 (484)
T ss_pred ccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 44568999999999999999999999999999999999865 222 11 156899999999999999999
Q ss_pred CCCc
Q 023688 85 PSPV 88 (278)
Q Consensus 85 ~~~~ 88 (278)
++.+
T Consensus 306 ~~~e 309 (484)
T KOG1855|consen 306 LNPE 309 (484)
T ss_pred hchh
Confidence 9743
No 99
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.71 E-value=0.0001 Score=50.41 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=41.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHH
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRAC 82 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al 82 (278)
+.|-|.+.+.+..++ +.++|..||+|.++.+... +-+.+|+|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~------~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES------TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC------CcEEEEEECCHHHHHhhC
Confidence 467888888777655 5558999999999887632 348999999999999986
No 100
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=9.6e-05 Score=71.26 Aligned_cols=66 Identities=29% Similarity=0.484 Sum_probs=50.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCC-C--CCccc---EEEEEeCCHHHHHHHHhCCC
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKN-T--GRSKG---YGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~-t--g~skG---~aFV~F~~~e~A~~Al~~~~ 86 (278)
..-.++||||+||++++|++|...|..||.+. |++..... . --.+| |+|+.|+++.++.+.|..+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 34478999999999999999999999999874 45553211 1 12366 99999999999888776654
No 101
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.67 E-value=4.8e-05 Score=71.43 Aligned_cols=74 Identities=19% Similarity=0.385 Sum_probs=61.9
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC---CccCCeeEEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS---PVIDGRRANCN 97 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~---~~i~Gr~l~V~ 97 (278)
..++.|.++||||+++|+||.+++..||.|+.+.+++.+. -+||+|.|+++|...+.... ..+.++.|.|.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn------QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq 99 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN------QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQ 99 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch------hhhhhhcchhhhhheeecccccCccccCcceeeh
Confidence 3678999999999999999999999999999999887653 79999999998876443333 35889999988
Q ss_pred Ecc
Q 023688 98 LAS 100 (278)
Q Consensus 98 ~A~ 100 (278)
+..
T Consensus 100 ~sn 102 (492)
T KOG1190|consen 100 YSN 102 (492)
T ss_pred hhh
Confidence 864
No 102
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.63 E-value=0.00012 Score=67.32 Aligned_cols=85 Identities=20% Similarity=0.336 Sum_probs=64.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHH----H--HHHHhhCCCEEEEEEeeCCCCCCc-ccE--EEEEeCCHHHHHHHHhCCC-C
Q 023688 18 YNDTTFTKIFVGGLAWETQRDT----M--RRYFEQFGEILEAVVITDKNTGRS-KGY--GFVTFKDPEAAMRACQNPS-P 87 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~----L--~~~F~~~G~I~~v~i~~d~~tg~s-kG~--aFV~F~~~e~A~~Al~~~~-~ 87 (278)
..-.+..-+||-+|++.+..|+ | .++|.+||.|.+|.|.+...+-.+ .+. .+|+|.+.|+|.+||.+.+ .
T Consensus 109 iRVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs 188 (480)
T COG5175 109 IRVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGS 188 (480)
T ss_pred ceeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccc
Confidence 3444566799999998887766 3 478999999999988654311111 233 3899999999999999999 5
Q ss_pred ccCCeeEEEEEccCC
Q 023688 88 VIDGRRANCNLASLG 102 (278)
Q Consensus 88 ~i~Gr~l~V~~A~~~ 102 (278)
.+|||.|++.+...+
T Consensus 189 ~~DGr~lkatYGTTK 203 (480)
T COG5175 189 LLDGRVLKATYGTTK 203 (480)
T ss_pred cccCceEeeecCchH
Confidence 799999998877543
No 103
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.56 E-value=0.00045 Score=65.04 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=67.4
Q ss_pred CcEEEEcCCC-CCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 23 FTKIFVGGLA-WETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 23 ~~~lfVgnLp-~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
...|.|.||. ..+|.+.|..+|..||+|.+|+|+.++. --|.|.+.|...|+-|++.|+ +.|.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 5788899997 5689999999999999999999998753 479999999999999999999 67999999999997
Q ss_pred CCC
Q 023688 101 LGA 103 (278)
Q Consensus 101 ~~~ 103 (278)
...
T Consensus 372 H~~ 374 (492)
T KOG1190|consen 372 HTN 374 (492)
T ss_pred Ccc
Confidence 543
No 104
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.56 E-value=0.00021 Score=71.11 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=65.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
..+.|-|.|+|++++-|||.+||..|-.+-+-.+++-.+.|+..|-|.|.|++.++|.+|.+.++ +.|..|+|.+.+
T Consensus 866 Gp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 866 GPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 34588899999999999999999999776654445545569999999999999999999999999 569999888765
No 105
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.43 E-value=0.00058 Score=59.70 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=62.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccC-CeeEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VID-GRRANCN 97 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~-Gr~l~V~ 97 (278)
......||+.|||.+++.+.|..+|++|...++|+++... ++.+||+|.+...+..|...+.. .|- ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~-----~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR-----SGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC-----CceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 4567799999999999999999999999999999988653 57999999999888888887772 332 6666666
Q ss_pred Ecc
Q 023688 98 LAS 100 (278)
Q Consensus 98 ~A~ 100 (278)
+++
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 654
No 106
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.38 E-value=0.00097 Score=51.70 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=51.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEE-EeeCC------CCCCcccEEEEEeCCHHHHHHHHhCCCCccCCe-
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAV-VITDK------NTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGR- 92 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~-i~~d~------~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr- 92 (278)
...+.|.|-+.|+.. ...|.++|++||+|.+.. +.++. ..-.....-.|+|+++.+|++||.+....|.|.
T Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~ 82 (100)
T PF05172_consen 4 DSETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSL 82 (100)
T ss_dssp GGCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCE
T ss_pred cCCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcE
Confidence 345568888999984 566778899999998875 11110 001123478899999999999999987778775
Q ss_pred eEEEEEcc
Q 023688 93 RANCNLAS 100 (278)
Q Consensus 93 ~l~V~~A~ 100 (278)
.+-|++.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 45677764
No 107
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.17 E-value=0.00069 Score=63.39 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=65.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCC-EEE--EEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEE
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGE-ILE--AVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNL 98 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~-I~~--v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~ 98 (278)
...|-+++||.+.+.|+|..||..|.. |.. |.++.+.+ |+..|-|||+|.+.|+|..|....++ ..+.|.|+|.-
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q-GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp 358 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ-GRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFP 358 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC-CCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEee
Confidence 557999999999999999999988863 433 67777754 89999999999999999999988874 46689999887
Q ss_pred ccC
Q 023688 99 ASL 101 (278)
Q Consensus 99 A~~ 101 (278)
+..
T Consensus 359 ~S~ 361 (508)
T KOG1365|consen 359 CSV 361 (508)
T ss_pred ccH
Confidence 753
No 108
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.09 E-value=0.0019 Score=59.81 Aligned_cols=81 Identities=19% Similarity=0.300 Sum_probs=62.9
Q ss_pred CCCCCCcEEEEcCCC----CCCC-------HHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 18 YNDTTFTKIFVGGLA----WETQ-------RDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp----~~~t-------ee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
......++|.|.||= .+.+ +++|++-.++||.|.+|.|-- ....|.+-|.|.+.++|..||+.|+
T Consensus 260 sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~ 335 (382)
T KOG1548|consen 260 SKARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMD 335 (382)
T ss_pred ccccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhc
Confidence 344556789999871 2223 367778889999999987653 3357899999999999999999999
Q ss_pred C-ccCCeeEEEEEccCC
Q 023688 87 P-VIDGRRANCNLASLG 102 (278)
Q Consensus 87 ~-~i~Gr~l~V~~A~~~ 102 (278)
+ .|+||.|...+-..+
T Consensus 336 GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 336 GRWFDGRQLTASIWDGK 352 (382)
T ss_pred CeeecceEEEEEEeCCc
Confidence 4 699999988876543
No 109
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.0023 Score=62.57 Aligned_cols=77 Identities=19% Similarity=0.279 Sum_probs=60.3
Q ss_pred CCcEEEEcCCCCCCCH------HHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc-CCee
Q 023688 22 TFTKIFVGGLAWETQR------DTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI-DGRR 93 (278)
Q Consensus 22 ~~~~lfVgnLp~~~te------e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i-~Gr~ 93 (278)
-...|+|.|+|.--.. .-|.++|+++|+|..+.++.+.+ |..+||.|++|.+..+|+.|++.++ +.| ..+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 3567999999853322 34678899999999999998877 5599999999999999999999998 344 4555
Q ss_pred EEEEEc
Q 023688 94 ANCNLA 99 (278)
Q Consensus 94 l~V~~A 99 (278)
..|++-
T Consensus 136 f~v~~f 141 (698)
T KOG2314|consen 136 FFVRLF 141 (698)
T ss_pred EEeehh
Confidence 666543
No 110
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.96 E-value=0.005 Score=43.48 Aligned_cols=57 Identities=26% Similarity=0.360 Sum_probs=46.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhC---CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQF---GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~---G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~ 85 (278)
....+|+|.+++ +++.++|+.+|..| ....+|+++.|. -|=|.|.+.+.|.+||..|
T Consensus 3 ~rpeavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 3 IRPEAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceeceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 345689999995 57888999999888 235689999885 4789999999999999864
No 111
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.91 E-value=0.00064 Score=63.62 Aligned_cols=74 Identities=22% Similarity=0.268 Sum_probs=56.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhh---C-CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEE
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQ---F-GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCN 97 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~---~-G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 97 (278)
.-.|-+++||+++++.++.+||.. . +..+.|-+++.+ .|+..|-|||.|..+++|..||.+....|.-|.|++.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElF 238 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELF 238 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345677899999999999999952 2 344566566554 3899999999999999999999887655666555543
No 112
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.80 E-value=0.00086 Score=59.67 Aligned_cols=71 Identities=17% Similarity=0.313 Sum_probs=58.2
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCC--------CCccc----EEEEEeCCHHHHHHHHhCCC-Ccc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNT--------GRSKG----YGFVTFKDPEAAMRACQNPS-PVI 89 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t--------g~skG----~aFV~F~~~e~A~~Al~~~~-~~i 89 (278)
.-.||+++||+.++-..|+++|+.||+|-+|.+-....+ +.++. -|.|+|.+...|.++.+.|| ..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357999999999999999999999999999988766544 33332 36799999999999999988 457
Q ss_pred CCee
Q 023688 90 DGRR 93 (278)
Q Consensus 90 ~Gr~ 93 (278)
.|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 7764
No 113
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.79 E-value=0.0011 Score=67.52 Aligned_cols=79 Identities=11% Similarity=0.227 Sum_probs=68.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEEEEccC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANCNLASL 101 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V~~A~~ 101 (278)
..+|||.|+|+..|.++|+.+|.++|.++++.++..+. |+.+|.+||.|.++.++.+++..... .+.-+.++|.+..+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~-gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA-GKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc-cccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 56899999999999999999999999999999888875 99999999999999999999888773 35556667776655
Q ss_pred C
Q 023688 102 G 102 (278)
Q Consensus 102 ~ 102 (278)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 114
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=96.77 E-value=0.0036 Score=61.21 Aligned_cols=64 Identities=19% Similarity=0.235 Sum_probs=51.5
Q ss_pred HHHHHHHhhCCCEEEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccC
Q 023688 38 DTMRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASL 101 (278)
Q Consensus 38 e~L~~~F~~~G~I~~v~i~~d~~t---g~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~ 101 (278)
|+++..+.+||.|..|+|.++-.. .-..|..||+|.+.+++++|.++|+ .++.+|.|.+.+-..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 345566778999999999887222 2345789999999999999999999 579999998887653
No 115
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.73 E-value=0.023 Score=48.60 Aligned_cols=74 Identities=19% Similarity=0.244 Sum_probs=60.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-c--cCCeeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-V--IDGRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~--i~Gr~l~ 95 (278)
......+|.|.+||..-++.+||++..+-|.|....+.+| |.+.|+|-..|+.+-|+..|.. . -.|....
T Consensus 111 srrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~y 183 (241)
T KOG0105|consen 111 SRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFRSEGETAY 183 (241)
T ss_pred ccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccccCcCcEee
Confidence 3445668999999999999999999999999999888876 3899999999999999998872 2 3455544
Q ss_pred EEEc
Q 023688 96 CNLA 99 (278)
Q Consensus 96 V~~A 99 (278)
|.+-
T Consensus 184 irv~ 187 (241)
T KOG0105|consen 184 IRVR 187 (241)
T ss_pred EEec
Confidence 4443
No 116
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=96.60 E-value=0.019 Score=53.79 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=66.3
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEE
Q 023688 19 NDTTFTKIFVGGLAW-ETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANC 96 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V 96 (278)
...+.+.+.|-+|.. .+..+.|..+|..||.|++|++++.+ .|-|.|++.|..++++|+..||. .+-|.+|+|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v 357 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNV 357 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEE
Confidence 334567889999985 45678899999999999999999865 46899999999999999999994 578999999
Q ss_pred EEccC
Q 023688 97 NLASL 101 (278)
Q Consensus 97 ~~A~~ 101 (278)
..++.
T Consensus 358 ~~SkQ 362 (494)
T KOG1456|consen 358 CVSKQ 362 (494)
T ss_pred eeccc
Confidence 98864
No 117
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.49 E-value=0.008 Score=44.89 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=43.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
.......+|. +|.++...||.++|+.||.| .|.++.|. -|||...+++.|..++..+.
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT-------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT-------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT-------EEEEEECCCHHHHHHHHHHT
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC-------cEEEEeecHHHHHHHHHHhc
Confidence 3445556665 99999999999999999998 56677663 69999999999998887665
No 118
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.47 E-value=0.0028 Score=56.46 Aligned_cols=62 Identities=26% Similarity=0.417 Sum_probs=57.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
..|+|.||...++.|.|++.|+.||.|...+++.|.. ++..+-++|+|...-.+.+|+..+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r-~k~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR-GKPTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc-ccccccchhhhhcchhHHHHHHHhc
Confidence 6899999999999999999999999999988888754 8888999999999999999998876
No 119
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.40 E-value=0.004 Score=60.87 Aligned_cols=72 Identities=10% Similarity=0.198 Sum_probs=59.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHh--hCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC---CccCCeeEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFE--QFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS---PVIDGRRAN 95 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~--~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~---~~i~Gr~l~ 95 (278)
...|.|.++.|+..+-+|++|.+|+ .+-++.+|++-.+. -.||+|++..+|+.|.+.|. ++|.||.|.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 4467888999999999999999995 46788888776543 37999999999999998887 468999886
Q ss_pred EEEc
Q 023688 96 CNLA 99 (278)
Q Consensus 96 V~~A 99 (278)
.++.
T Consensus 246 ARIK 249 (684)
T KOG2591|consen 246 ARIK 249 (684)
T ss_pred hhhh
Confidence 5544
No 120
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.40 E-value=0.012 Score=48.46 Aligned_cols=58 Identities=24% Similarity=0.361 Sum_probs=44.9
Q ss_pred HHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEccCCCC
Q 023688 39 TMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLGAH 104 (278)
Q Consensus 39 ~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~~~~~ 104 (278)
+|.+.|..||++.=++++-+ .-+|+|.+-+.|.+|+.....+|+|+.|+|++..+..-
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals~dg~~v~g~~l~i~LKtpdW~ 109 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALSLDGIQVNGRTLKIRLKTPDWL 109 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHHGCCSEETTEEEEEEE------
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHccCCcEECCEEEEEEeCCccHH
Confidence 67778889999888877755 46899999999999999988899999999999887654
No 121
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.25 E-value=0.0025 Score=60.45 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=58.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC--ccCCeeEEEEEccC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP--VIDGRRANCNLASL 101 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~--~i~Gr~l~V~~A~~ 101 (278)
.+||++||.+.++-++|+.+|... ++.....--...||+||.+.+...|.+|++.++. ++.|+++++...-+
T Consensus 2 nklyignL~p~~~psdl~svfg~a------k~~~~g~fl~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA------KIPGSGQFLVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc------cCCCCcceeeecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 479999999999999999999643 1111111111257999999999999999999993 58999999998866
Q ss_pred CCCC
Q 023688 102 GAHK 105 (278)
Q Consensus 102 ~~~~ 105 (278)
+..+
T Consensus 76 kkqr 79 (584)
T KOG2193|consen 76 KKQR 79 (584)
T ss_pred HHHH
Confidence 5443
No 122
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.23 E-value=0.014 Score=53.13 Aligned_cols=64 Identities=17% Similarity=0.290 Sum_probs=50.1
Q ss_pred HHHHHHHHhhCCCEEEEEEeeCCCCCCcc-cEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 37 RDTMRRYFEQFGEILEAVVITDKNTGRSK-GYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 37 ee~L~~~F~~~G~I~~v~i~~d~~tg~sk-G~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
|+++++.+++||.|.+|.|..++.--..+ ---||+|+..++|.+|+..+| ..|.||.+..-+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45788899999999999888765322222 347999999999999999999 56999988655543
No 123
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.21 E-value=0.0018 Score=57.64 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=47.8
Q ss_pred HHHHHHh-hCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 39 TMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 39 ~L~~~F~-~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
+|...|+ +||+|+++.|..+. .-.-+|=++|.|..+++|++|++.|| ..+.|++|.+.+.-
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 4444444 89999998766543 13447889999999999999999999 57999999888763
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.17 E-value=0.00031 Score=71.29 Aligned_cols=70 Identities=27% Similarity=0.381 Sum_probs=61.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCC
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDG 91 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~G 91 (278)
+..++||.||+..+.+++|+..|..++.|..+.|.-.+.+++.||.|+|+|.+.+++.+||......+-|
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 3568999999999999999999999999988887766677999999999999999999999987754444
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.03 E-value=0.01 Score=55.85 Aligned_cols=76 Identities=18% Similarity=0.201 Sum_probs=61.8
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEcc
Q 023688 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLAS 100 (278)
Q Consensus 25 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t---g~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~ 100 (278)
.|-|.||.+.++.++++.+|.-.|+|.++.|...... ......|||.|.|...+..|-...|.+|-++.|.|...-
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEEecC
Confidence 7999999999999999999999999999988653221 234568999999999999988888877666666665543
No 126
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=95.84 E-value=0.54 Score=44.40 Aligned_cols=78 Identities=19% Similarity=0.182 Sum_probs=60.1
Q ss_pred CCCcEEEEcCCC--CCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-cc--CCeeEE
Q 023688 21 TTFTKIFVGGLA--WETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VI--DGRRAN 95 (278)
Q Consensus 21 ~~~~~lfVgnLp--~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i--~Gr~l~ 95 (278)
...+.|.+.=|. .-+|-+-|..+....|+|.+|.|.+. ++. -|.|+|++.+.|++|.+.||. .| .-..|+
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngV---QAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGV---QAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cce---eeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 344455555454 46888999999999999999998864 333 589999999999999999994 33 335788
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|++|++.+
T Consensus 193 IeyAkP~r 200 (494)
T KOG1456|consen 193 IEYAKPTR 200 (494)
T ss_pred EEecCcce
Confidence 89998753
No 127
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.59 E-value=0.014 Score=58.46 Aligned_cols=77 Identities=16% Similarity=0.049 Sum_probs=60.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~-v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
..-...|||..||..+++.++.++|.+--.|++ |.|-+.+ +++.++.|||.|..++++.+|+.... +.+..|.|+|.
T Consensus 431 ~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~ 509 (944)
T KOG4307|consen 431 GGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVD 509 (944)
T ss_pred CCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEee
Confidence 344568999999999999999999988777877 5555544 58889999999999888877776655 34666666665
No 128
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.27 E-value=0.02 Score=58.94 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=65.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCc-cC--CeeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPV-ID--GRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~-i~--Gr~l~ 95 (278)
.....+.+||++|..++....|.+.|..||.|..|.+-.. .-|++|.+++...+..|++.+... |. .++|+
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg------q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG------QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC------CcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4566789999999999999999999999999999876432 349999999999999999998843 44 36789
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|.+|...
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9999754
No 129
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=95.21 E-value=0.019 Score=52.72 Aligned_cols=81 Identities=20% Similarity=0.236 Sum_probs=69.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...+++||+++.+.+.+.++..+|...|.+..+.+........+++++.|+|+..+.+..||+... ..+.++.+...+.
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 357899999999999999999999999988888777766678899999999999999999999887 4677777776666
Q ss_pred cC
Q 023688 100 SL 101 (278)
Q Consensus 100 ~~ 101 (278)
..
T Consensus 166 ~~ 167 (285)
T KOG4210|consen 166 TR 167 (285)
T ss_pred cc
Confidence 43
No 130
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.98 E-value=0.15 Score=41.95 Aligned_cols=76 Identities=20% Similarity=0.283 Sum_probs=59.7
Q ss_pred CCCCCcEEEEcCCCCCCC-HHHHHH---HHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeE
Q 023688 19 NDTTFTKIFVGGLAWETQ-RDTMRR---YFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRA 94 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~t-ee~L~~---~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l 94 (278)
.+..-.+|.|+=|..++. .|||+. .++.||+|.+|.+.- +--|.|.|+|..+|=+|+..+....-|..+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s~~pgtm~ 154 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQSRAPGTMF 154 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcCCCCCceE
Confidence 466777899988877765 345554 457899999986642 336999999999999999999888889999
Q ss_pred EEEEccC
Q 023688 95 NCNLASL 101 (278)
Q Consensus 95 ~V~~A~~ 101 (278)
.|.|-..
T Consensus 155 qCsWqqr 161 (166)
T PF15023_consen 155 QCSWQQR 161 (166)
T ss_pred Eeecccc
Confidence 9998653
No 131
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.68 E-value=0.0076 Score=61.87 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=61.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
+....++||++||+..+++.+|+..|..+|.|.+|.|-+-+. +.-.-|+||.|.+...+-+|+..+. ..|..-.+++.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~g 446 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIG 446 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccc
Confidence 445578999999999999999999999999999998876543 4445699999999988888887776 33333334444
Q ss_pred Ec
Q 023688 98 LA 99 (278)
Q Consensus 98 ~A 99 (278)
+.
T Consensus 447 lG 448 (975)
T KOG0112|consen 447 LG 448 (975)
T ss_pred cc
Confidence 43
No 132
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.47 E-value=0.029 Score=54.04 Aligned_cols=78 Identities=19% Similarity=0.156 Sum_probs=61.2
Q ss_pred CCCCCcEEEEcCCCCCCC-HHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQ-RDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~t-ee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 97 (278)
...+.+.|-+.-+++... .++|..+|.+||+|..|.|-...+ .|.|+|.+..+|-+|......+|++|.|+|.
T Consensus 368 ~~~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~------~a~vTF~t~aeag~a~~s~~avlnnr~iKl~ 441 (526)
T KOG2135|consen 368 AVVDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSL------HAVVTFKTRAEAGEAYASHGAVLNNRFIKLF 441 (526)
T ss_pred hhcccchhhhhccCCCCchHhhhhhhhhhcCccccccccCchh------hheeeeeccccccchhccccceecCceeEEE
Confidence 344455566666666554 578999999999999998865433 7899999999998887776678999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
|-.+.
T Consensus 442 whnps 446 (526)
T KOG2135|consen 442 WHNPS 446 (526)
T ss_pred EecCC
Confidence 98763
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.31 E-value=0.013 Score=54.09 Aligned_cols=82 Identities=23% Similarity=0.393 Sum_probs=59.9
Q ss_pred CCCcEEEEcCCCCCCCHHHH---HHHHhhCCCEEEEEEeeCCC--CCCc-ccEEEEEeCCHHHHHHHHhCCCC-ccCCee
Q 023688 21 TTFTKIFVGGLAWETQRDTM---RRYFEQFGEILEAVVITDKN--TGRS-KGYGFVTFKDPEAAMRACQNPSP-VIDGRR 93 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L---~~~F~~~G~I~~v~i~~d~~--tg~s-kG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~ 93 (278)
.+...+||-+|+..+.++++ .+.|.+||.|.+|.+..+.. .+.. ..-++|+|.+.|+|..||...+. .++|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 34467888899987766554 35788999999998887652 1111 12378999999999999999985 577887
Q ss_pred EEEEEccCC
Q 023688 94 ANCNLASLG 102 (278)
Q Consensus 94 l~V~~A~~~ 102 (278)
|++.+...+
T Consensus 155 lka~~gttk 163 (327)
T KOG2068|consen 155 LKASLGTTK 163 (327)
T ss_pred hHHhhCCCc
Confidence 776666544
No 134
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=94.23 E-value=0.043 Score=54.27 Aligned_cols=76 Identities=12% Similarity=0.168 Sum_probs=61.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHh-hCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCc----cCCee
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFE-QFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPV----IDGRR 93 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~-~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~----i~Gr~ 93 (278)
.....+.|+|.||-.-.|.-+|++++. ..|.|++. || | +-|..|||.|.+.++|.+.+..|+.+ -+.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 556678999999999999999999997 45566666 33 2 23568999999999999999888843 47788
Q ss_pred EEEEEcc
Q 023688 94 ANCNLAS 100 (278)
Q Consensus 94 l~V~~A~ 100 (278)
|.+.++.
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888875
No 135
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.52 E-value=0.31 Score=44.72 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=51.0
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeE-EEEEc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRA-NCNLA 99 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l-~V~~A 99 (278)
+.=|-|-++++.-. ..|..+|++||+|++.+... .-.+-.|.|.++.+|.|||......|+|..+ -|+..
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~------ngNwMhirYssr~~A~KALskng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPS------NGNWMHIRYSSRTHAQKALSKNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecCC------CCceEEEEecchhHHHHhhhhcCeeeccceEEeeeec
Confidence 44455667877654 45667899999998876542 2238899999999999999987777887654 44443
No 136
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.23 E-value=0.36 Score=34.97 Aligned_cols=66 Identities=15% Similarity=0.247 Sum_probs=37.6
Q ss_pred EEEEc-CCCCCCCHHHHHHHHhhCC-----CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 25 KIFVG-GLAWETQRDTMRRYFEQFG-----EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 25 ~lfVg-nLp~~~tee~L~~~F~~~G-----~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
+|||. +--..++..+|..++..-+ .|-+|+|..+ |.||+-.. +.++++++.++ ..+.|++|+|+
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~--------~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN--------FSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS---------EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee--------EEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 45552 2234678889999987664 4556666543 88998876 56888888888 57999999998
Q ss_pred Ec
Q 023688 98 LA 99 (278)
Q Consensus 98 ~A 99 (278)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 76
No 137
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.07 E-value=0.12 Score=44.15 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=46.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhh-CCCE---EEEEEeeCCCC-CC-cccEEEEEeCCHHHHHHHHhCCCC-c-cCC-
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQ-FGEI---LEAVVITDKNT-GR-SKGYGFVTFKDPEAAMRACQNPSP-V-IDG- 91 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~-~G~I---~~v~i~~d~~t-g~-skG~aFV~F~~~e~A~~Al~~~~~-~-i~G- 91 (278)
....+|.|++||+.++|+++.+.++. ++.. ..+.-..+..+ .. .-.-|+|.|.+.+++...+..+++ . +|.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 44569999999999999999986665 5544 33331222211 11 234689999999999998888873 3 332
Q ss_pred ---eeEEEEEcc
Q 023688 92 ---RRANCNLAS 100 (278)
Q Consensus 92 ---r~l~V~~A~ 100 (278)
.+..|++|-
T Consensus 85 g~~~~~~VE~Ap 96 (176)
T PF03467_consen 85 GNEYPAVVEFAP 96 (176)
T ss_dssp S-EEEEEEEE-S
T ss_pred CCCcceeEEEcc
Confidence 244677764
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.77 E-value=0.65 Score=39.95 Aligned_cols=61 Identities=18% Similarity=0.212 Sum_probs=43.6
Q ss_pred CHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC--C-ccCCeeEEEEEccCC
Q 023688 36 QRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS--P-VIDGRRANCNLASLG 102 (278)
Q Consensus 36 tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~--~-~i~Gr~l~V~~A~~~ 102 (278)
..+.|+++|..++.+....+++.- +-..|.|.+.++|.+|...++ . .+.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 357899999999998888777542 357899999999999999988 4 599999999998543
No 139
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=91.62 E-value=0.27 Score=48.36 Aligned_cols=56 Identities=20% Similarity=0.256 Sum_probs=41.0
Q ss_pred CCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC----ccCCee-EEEEEccCC
Q 023688 47 FGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP----VIDGRR-ANCNLASLG 102 (278)
Q Consensus 47 ~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~----~i~Gr~-l~V~~A~~~ 102 (278)
.|.-..+.++.|-.+....|||||.|.+.+++.++.++.+. .|.+++ +++.||+-.
T Consensus 413 ~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYArIQ 473 (549)
T KOG4660|consen 413 KGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYARIQ 473 (549)
T ss_pred cCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhhhh
Confidence 34445566777777777889999999999999999888873 355444 466676543
No 140
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.37 E-value=0.1 Score=52.21 Aligned_cols=70 Identities=17% Similarity=0.259 Sum_probs=59.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
....+|||+||...+.++-++.++..+|.|..+..+. |+|.+|...+...+|+..+. ..+++.++.++..
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---------hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 3456899999999999999999999999988775543 99999999999999999888 4688888866653
No 141
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=90.83 E-value=4.5 Score=31.85 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=45.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP 87 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~ 87 (278)
...+.+...|..++.++|..+.+.+ ..|..++|++|. ..++=.+.++|++.++|.+-.+..|+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNG 76 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNG 76 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCC
Confidence 3344444555666667777666655 467788999874 33566789999999999999998883
No 142
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.93 E-value=0.41 Score=49.37 Aligned_cols=72 Identities=18% Similarity=0.232 Sum_probs=59.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Cc--cCCeeEEEEEccC
Q 023688 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PV--IDGRRANCNLASL 101 (278)
Q Consensus 25 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~--i~Gr~l~V~~A~~ 101 (278)
+..+-|..-..+...|..+|++||.|.+++.++|-. .+.|+|.+.+.|..|++.+. ++ +.|-+.+|.+|+.
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN------MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 445556667788889999999999999999888754 89999999999999999988 33 6677889999875
Q ss_pred C
Q 023688 102 G 102 (278)
Q Consensus 102 ~ 102 (278)
-
T Consensus 374 ~ 374 (1007)
T KOG4574|consen 374 L 374 (1007)
T ss_pred c
Confidence 3
No 143
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=83.27 E-value=3.8 Score=29.36 Aligned_cols=60 Identities=12% Similarity=0.181 Sum_probs=42.8
Q ss_pred HHHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 38 DTMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 38 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
++|++.|...| .|.++.-+..+.+.+.--.-||+++...+. .+.++ ..|++.+|+|+..+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~---k~i~~Ik~l~~~~V~vE~~~ 63 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNN---KEIYKIKTLCGQRVKVERPR 63 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccc---cceeehHhhCCeEEEEecCC
Confidence 56778887777 777887777766666777889988765542 23344 46889888888664
No 144
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.65 E-value=4.5 Score=38.71 Aligned_cols=64 Identities=11% Similarity=0.103 Sum_probs=50.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccC
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGE-ILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVID 90 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~-I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~ 90 (278)
..--+.|=|-++|.....+||...|+.|+. -.+|+|+-|. .+|-.|.+...|..||..-+..+.
T Consensus 388 ~dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt-------halaVFss~~~AaeaLt~kh~~lK 452 (528)
T KOG4483|consen 388 SDLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT-------HALAVFSSVNRAAEALTLKHDWLK 452 (528)
T ss_pred ccccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc-------eeEEeecchHHHHHHhhccCceEE
Confidence 334567889999999999999999999974 3577787764 799999999999999987444333
No 145
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=79.82 E-value=4.3 Score=29.25 Aligned_cols=60 Identities=10% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 38 DTMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 38 e~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
++|++.|.+.| .++.+..+..++++..-..-||+.....+... .++ +.|++++|.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 46788888888 78888888877766666788888875543332 334 46899998887653
No 146
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=79.75 E-value=6.9 Score=35.92 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=35.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCE-EEEEEeeCCCCCCcccEEEEEeCCHH
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFKDPE 76 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I-~~v~i~~d~~tg~skG~aFV~F~~~e 76 (278)
..-|+|+||+.++.-.+|+..+.+-+.+ .++.+. -.+|-||++|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk------g~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK------GHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee------cCCcceeEecCCcc
Confidence 4569999999999999999999887643 233331 24667999997653
No 147
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=78.39 E-value=11 Score=26.85 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeE
Q 023688 34 ETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRA 94 (278)
Q Consensus 34 ~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l 94 (278)
.++-++|+..+.+|.-. + |+.|+ | | =||.|.+.++|++|.+..++ .+-..+|
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d~-t----G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m 63 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDDR-T----G-FYIVFNDSKEAERCFRAEDGTLFFTYRM 63 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEecC-C----E-EEEEECChHHHHHHHHhcCCCEEEEEEE
Confidence 56778999999999632 3 34443 2 2 37999999999999998874 3444444
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=77.23 E-value=0.47 Score=41.82 Aligned_cols=68 Identities=25% Similarity=0.303 Sum_probs=55.8
Q ss_pred CCCCCCCcEEEEcC----CCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 023688 17 DYNDTTFTKIFVGG----LAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85 (278)
Q Consensus 17 ~~~~~~~~~lfVgn----Lp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~ 85 (278)
.++++...+++.|+ |...++++.+.+.|+.-+.|..+++.++.+ ++.+-++|+++......-.++...
T Consensus 74 l~~~e~q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y 145 (267)
T KOG4454|consen 74 LEEDEEQRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLY 145 (267)
T ss_pred hccchhhcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhh
Confidence 34666677899999 999999999999999999999999999876 889999999876655555555443
No 149
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.31 E-value=7.2 Score=35.85 Aligned_cols=84 Identities=13% Similarity=0.189 Sum_probs=62.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCC-------CCCcccEEEEEeCCHHHHHHH----HhCCC
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKN-------TGRSKGYGFVTFKDPEAAMRA----CQNPS 86 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~-------tg~skG~aFV~F~~~e~A~~A----l~~~~ 86 (278)
.+.-..|.|.+.||..+++--.+-..|.+||.|+.|.++.+.. .-+......+.|-+++.+... |+++.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 3555677899999999999888888999999999999997651 122345778899888877643 33333
Q ss_pred ---CccCCeeEEEEEccC
Q 023688 87 ---PVIDGRRANCNLASL 101 (278)
Q Consensus 87 ---~~i~Gr~l~V~~A~~ 101 (278)
..+....|.+.+..-
T Consensus 90 EfK~~L~S~~L~lsFV~l 107 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSL 107 (309)
T ss_pred HHHHhcCCcceeEEEEEE
Confidence 357888888888764
No 150
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=72.73 E-value=0.5 Score=44.86 Aligned_cols=63 Identities=14% Similarity=0.023 Sum_probs=50.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCcc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVI 89 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i 89 (278)
.++|+|.+|...+...++-++|+.+|+|....+-. +-..-+|-|+|........|+..++.++
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr~~gre~ 213 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALRSHGRER 213 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHHhcchhh
Confidence 47899999999999999999999999988766543 2234577799998888888888776443
No 151
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.09 E-value=18 Score=35.19 Aligned_cols=66 Identities=12% Similarity=0.169 Sum_probs=53.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhC-CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP 87 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~ 87 (278)
+...+.|+|=-+|..++-.||-.|...+ -.|.+++|++|.. ..+=...|+|++.++|....+.+|+
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~--pnrymvLIkFr~q~da~~Fy~efNG 137 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM--PNRYMVLIKFRDQADADTFYEEFNG 137 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC--CceEEEEEEeccchhHHHHHHHcCC
Confidence 3337789999999999999999988654 5788999999742 2333578999999999999999883
No 152
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=68.72 E-value=11 Score=26.46 Aligned_cols=19 Identities=37% Similarity=0.609 Sum_probs=15.5
Q ss_pred HHHHHHHhhCCCEEEEEEe
Q 023688 38 DTMRRYFEQFGEILEAVVI 56 (278)
Q Consensus 38 e~L~~~F~~~G~I~~v~i~ 56 (278)
++||++|+..|+|.-+-|.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999999766543
No 153
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=65.28 E-value=70 Score=32.70 Aligned_cols=68 Identities=10% Similarity=0.028 Sum_probs=46.7
Q ss_pred cEEEEc-CCCCCCCHHHHHHHHhhCCCEE-----EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 24 TKIFVG-GLAWETQRDTMRRYFEQFGEIL-----EAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 24 ~~lfVg-nLp~~~tee~L~~~F~~~G~I~-----~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
.++||. +=-..++..+|-.++..-+.|. +|+|.. .|.||+... +.+.+.++.++ ..+.|++|.|
T Consensus 487 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~~--------~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~ 557 (629)
T PRK11634 487 QLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFA--------SHSTIELPK-GMPGEVLQHFTRTRILNKPMNM 557 (629)
T ss_pred EEEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEeC--------CceEEEcCh-hhHHHHHHHhccccccCCceEE
Confidence 446653 2235677788888886655443 344432 388999875 55778888887 5699999999
Q ss_pred EEcc
Q 023688 97 NLAS 100 (278)
Q Consensus 97 ~~A~ 100 (278)
+.+.
T Consensus 558 ~~~~ 561 (629)
T PRK11634 558 QLLG 561 (629)
T ss_pred EECC
Confidence 9885
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.68 E-value=15 Score=29.05 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=27.6
Q ss_pred CCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHhC
Q 023688 35 TQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD-PEAAMRACQN 84 (278)
Q Consensus 35 ~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~-~e~A~~Al~~ 84 (278)
++.++|++.|+.|..++ ++.+.++ ....|++.|+|.+ ..-.+.|+..
T Consensus 29 ~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~l 76 (116)
T PF03468_consen 29 MSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMRL 76 (116)
T ss_dssp --SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHHH
Confidence 35588999999998774 6666664 3578999999974 4444455443
No 155
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=57.52 E-value=9.9 Score=32.62 Aligned_cols=74 Identities=22% Similarity=0.188 Sum_probs=49.8
Q ss_pred CcEEEEcCCCCCCCH-----HHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCe-eEE
Q 023688 23 FTKIFVGGLAWETQR-----DTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGR-RAN 95 (278)
Q Consensus 23 ~~~lfVgnLp~~~te-----e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr-~l~ 95 (278)
.+++++.+|+.++-. ...+.+|..+-+....++++ +.++.-|.|.+++.|.+|...+. ..|.|+ .+.
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 446777788765532 23445555555444333433 34466688999999999999888 578888 888
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
+-+|.+.
T Consensus 84 ~yfaQ~~ 90 (193)
T KOG4019|consen 84 LYFAQPG 90 (193)
T ss_pred EEEccCC
Confidence 8888643
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=54.55 E-value=19 Score=30.52 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=41.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCC
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~ 74 (278)
.........+++.+++..++++++..+|..++.+..+.+...........+.++.+..
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (306)
T COG0724 219 ALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEA 276 (306)
T ss_pred cccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhH
Confidence 3455667789999999999999999999999999777776554333333344443333
No 157
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=52.21 E-value=19 Score=33.06 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=27.1
Q ss_pred CcEEEEcCCCC------------CCCHHHHHHHHhhCCCEEEEEEee
Q 023688 23 FTKIFVGGLAW------------ETQRDTMRRYFEQFGEILEAVVIT 57 (278)
Q Consensus 23 ~~~lfVgnLp~------------~~tee~L~~~F~~~G~I~~v~i~~ 57 (278)
..+|++.+||- --+|+.|+..|+.||+|..|.|+.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34677777763 246788999999999999998863
No 158
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=52.16 E-value=1 Score=43.32 Aligned_cols=77 Identities=16% Similarity=0.204 Sum_probs=61.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEE-eeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVV-ITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i-~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
..++++-|.|+|+...++.|..++..||.++.|.. ..|.+| -..-|++...+.++.||..++ +.+....++|.+
T Consensus 78 qrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 78 QRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred HHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 44678999999999999999999999999998855 344432 223478889999999999999 468888888777
Q ss_pred ccC
Q 023688 99 ASL 101 (278)
Q Consensus 99 A~~ 101 (278)
--.
T Consensus 154 iPd 156 (584)
T KOG2193|consen 154 IPD 156 (584)
T ss_pred Cch
Confidence 643
No 159
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=49.67 E-value=2.1 Score=29.40 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=20.7
Q ss_pred cccEEEEEeCC-HHHHHHHHhCCCCccCCeeEEEEEcc
Q 023688 64 SKGYGFVTFKD-PEAAMRACQNPSPVIDGRRANCNLAS 100 (278)
Q Consensus 64 skG~aFV~F~~-~e~A~~Al~~~~~~i~Gr~l~V~~A~ 100 (278)
.+|||||.-++ .++.--.-+.++.-++|-++.|++..
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCCEEEEEEec
Confidence 57899999887 21111112233455788888888876
No 160
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=49.16 E-value=2.9 Score=41.47 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=48.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
..++|||.|+.++++-++|..+++.+--+.++.+-.+..-.+.+.++.|+|.---....||..++
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn 294 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALN 294 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhh
Confidence 35789999999999999999999988767666655443334456688899986666666666655
No 161
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=47.44 E-value=14 Score=23.15 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=10.6
Q ss_pred CCCCHHHHHHHHhhCC
Q 023688 33 WETQRDTMRRYFEQFG 48 (278)
Q Consensus 33 ~~~tee~L~~~F~~~G 48 (278)
.++++++||+.|.+..
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4789999999998764
No 162
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.90 E-value=38 Score=25.53 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=24.4
Q ss_pred EEEEeCCHHHHHHHHhCCCC--ccCCeeEEEEEc
Q 023688 68 GFVTFKDPEAAMRACQNPSP--VIDGRRANCNLA 99 (278)
Q Consensus 68 aFV~F~~~e~A~~Al~~~~~--~i~Gr~l~V~~A 99 (278)
|.|+|.+.+-|++.|+.-.+ .+++..++|+..
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~ 34 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVS 34 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEE
Confidence 57999999999999988764 367766665543
No 163
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.86 E-value=12 Score=28.17 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=21.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHH
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYF 44 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F 44 (278)
.....++|-|.|||...+||+|++.+
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeE
Confidence 44567899999999999999999754
No 164
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=38.89 E-value=31 Score=31.58 Aligned_cols=32 Identities=25% Similarity=0.144 Sum_probs=23.8
Q ss_pred EEEEeCCHHHHHHHHhCCCCccCCeeEEEEEcc
Q 023688 68 GFVTFKDPEAAMRACQNPSPVIDGRRANCNLAS 100 (278)
Q Consensus 68 aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~ 100 (278)
|||+|++.++|+.|++.... .+.++++++.|-
T Consensus 1 aFVtF~~~~~a~~~~q~~~~-~~~~~~~v~~AP 32 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLS-KRPNSWRVSPAP 32 (325)
T ss_pred CEEEECCHHHHHHHHHHHhc-CCCCCceEeeCC
Confidence 79999999999999986542 233555777764
No 165
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=37.47 E-value=90 Score=24.06 Aligned_cols=47 Identities=30% Similarity=0.446 Sum_probs=27.0
Q ss_pred CCCCHHHHHHHHh-hCCCEEEEEEeeCCC----CCCcccEEEEEeCCHHHHHH
Q 023688 33 WETQRDTMRRYFE-QFGEILEAVVITDKN----TGRSKGYGFVTFKDPEAAMR 80 (278)
Q Consensus 33 ~~~tee~L~~~F~-~~G~I~~v~i~~d~~----tg~skG~aFV~F~~~e~A~~ 80 (278)
...+..+|++-+. .++.=.+..++..-. .+++.|||.| |++.+.+++
T Consensus 29 ~tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk 80 (99)
T PRK01178 29 ATPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARK 80 (99)
T ss_pred CCCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHh
Confidence 3667888888774 455433444444332 3556666655 666665543
No 166
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=35.76 E-value=16 Score=35.04 Aligned_cols=64 Identities=17% Similarity=0.137 Sum_probs=51.7
Q ss_pred CCCCcEEEEcCCCCCCCHH--------HHHHHHhh--CCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHh
Q 023688 20 DTTFTKIFVGGLAWETQRD--------TMRRYFEQ--FGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQ 83 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee--------~L~~~F~~--~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~ 83 (278)
+...+.+|+.++..+...+ ++...|.. .+.+.-+...+|.....++|-.|++|...+.+++.+.
T Consensus 171 ~~~qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 171 SQMQRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHhhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3345678888888766655 89999988 6777778887877667889999999999999999984
No 167
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=34.85 E-value=1.3e+02 Score=24.12 Aligned_cols=47 Identities=19% Similarity=0.395 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHHhhC-CCEEEEEEe----eCCCCCCcccEEEEEeCCHHHHHH
Q 023688 33 WETQRDTMRRYFEQF-GEILEAVVI----TDKNTGRSKGYGFVTFKDPEAAMR 80 (278)
Q Consensus 33 ~~~tee~L~~~F~~~-G~I~~v~i~----~d~~tg~skG~aFV~F~~~e~A~~ 80 (278)
.+++.+||++-+.+. -.-.++.++ ..-.+|++.|||.| |++.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 367889999888653 222233333 33456788899976 666665543
No 168
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=34.18 E-value=36 Score=30.49 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=30.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEA 53 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v 53 (278)
..+...++||+-|||..++++.|+++.+..|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 455667789999999999999999999998855444
No 169
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.07 E-value=6.6 Score=38.06 Aligned_cols=77 Identities=10% Similarity=-0.112 Sum_probs=56.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASL 101 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~ 101 (278)
.+.|+..|+-..++++|.-+|+.+|.|..+.+-+.-..+-.+-.+||+-.. ..+..+|..+. ..+.+..+++.++..
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 456788899999999999999999999887765544445556788988765 44566666555 456777777777753
No 170
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=33.05 E-value=1.8e+02 Score=21.76 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 37 RDTMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 37 ee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
++.+++++++.| +++++.+.. |.---...+++.|.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~----G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL----GEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec----CCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 466888888876 677777765 4455678889999998887765443
No 171
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=31.86 E-value=1.1e+02 Score=23.03 Aligned_cols=48 Identities=21% Similarity=0.367 Sum_probs=31.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 73 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~ 73 (278)
..-||||+++..+.|.-.+.+.+..++- ++.++... ....||.|-+.-
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G-~a~m~~~~--~neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDG-SAVMVWSD--NNEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCc-cEEEEEcc--CCCCCEEEEEeC
Confidence 3469999999999887777766654433 23333332 226799998873
No 172
>PF14893 PNMA: PNMA
Probab=30.99 E-value=18 Score=34.05 Aligned_cols=25 Identities=8% Similarity=0.197 Sum_probs=21.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhh
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQ 46 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~ 46 (278)
..+.|.|.+||.+|++++|++.+..
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 4568999999999999999888743
No 173
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=30.46 E-value=63 Score=27.83 Aligned_cols=59 Identities=17% Similarity=0.113 Sum_probs=37.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHh-hCCCEEEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFE-QFGEILEAVVITDKNT-GRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~-~~G~I~~v~i~~d~~t-g~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
.+++|.. .++++|.++.. .-|.+..|.+.+.... -..+|--||+|.+.+.|.++++...
T Consensus 111 ~r~v~~K-----~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~~e 171 (205)
T KOG4213|consen 111 ERTVYKK-----ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDTHE 171 (205)
T ss_pred Hhhhhcc-----CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhhhh
Confidence 4455543 55555555442 2267777766554321 1457889999999999998877654
No 174
>KOG3432 consensus Vacuolar H+-ATPase V1 sector, subunit F [Energy production and conversion]
Probab=28.23 E-value=86 Score=24.72 Aligned_cols=27 Identities=15% Similarity=0.231 Sum_probs=21.1
Q ss_pred CCCCCCHHHHHHHHhhCCCEEEEEEee
Q 023688 31 LAWETQRDTMRRYFEQFGEILEAVVIT 57 (278)
Q Consensus 31 Lp~~~tee~L~~~F~~~G~I~~v~i~~ 57 (278)
+...+++++|++.|.+|-.-.++.|+.
T Consensus 41 v~~~Tt~~eiedaF~~f~~RdDIaIiL 67 (121)
T KOG3432|consen 41 VDSKTTVEEIEDAFKSFTARDDIAIIL 67 (121)
T ss_pred EeccCCHHHHHHHHHhhccccCeEEEE
Confidence 356899999999999997766665554
No 175
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.77 E-value=3.2e+02 Score=22.80 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=38.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhC---CCEEEEEEeeCCCC---------CCccc-EEEEEeCCHHH
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQF---GEILEAVVITDKNT---------GRSKG-YGFVTFKDPEA 77 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~---G~I~~v~i~~d~~t---------g~skG-~aFV~F~~~e~ 77 (278)
.+|++.-+...++|++.++..++- +++++|.+-+.+++ ...+. |-+|.|++-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 689999999999999999998764 56667766544321 12233 77788877544
No 176
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=26.72 E-value=1.2e+02 Score=22.51 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=20.8
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEeCC
Q 023688 49 EILEAVVITDKNTGRSKGYGFVTFKD 74 (278)
Q Consensus 49 ~I~~v~i~~d~~tg~skG~aFV~F~~ 74 (278)
+|++|+|..-...++-|+||=|+|++
T Consensus 2 ~itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 2 KITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp -EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred ccEEEEEEEecCCCCEEEEEEEEECC
Confidence 47888887766568899999999987
No 177
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=25.55 E-value=61 Score=24.42 Aligned_cols=49 Identities=14% Similarity=0.258 Sum_probs=28.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEEeeCCCCCCcccEEEEEeCC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFKD 74 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~-~G~I~~v~i~~d~~tg~skG~aFV~F~~ 74 (278)
..-||||+++..+.|.--+.+-+. .++ -.+.++.. +....||.|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~--~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWS--SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEe--CCCCCCcEEEecCC
Confidence 345999999998887544444443 222 12333332 23356799988765
No 178
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=25.52 E-value=1.6e+02 Score=23.97 Aligned_cols=45 Identities=11% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHhh-CC-CEEEEEEeeCC----CCCCcccEEEEEeCCHHHHH
Q 023688 34 ETQRDTMRRYFEQ-FG-EILEAVVITDK----NTGRSKGYGFVTFKDPEAAM 79 (278)
Q Consensus 34 ~~tee~L~~~F~~-~G-~I~~v~i~~d~----~tg~skG~aFV~F~~~e~A~ 79 (278)
..+.++|++.+.+ |+ .=.++.++..- ..+++.|||.| |++.+.+.
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~I-Yds~e~~k 85 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLI-YDNLAALK 85 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHH
Confidence 6778899888854 44 22333333332 23566777765 66666544
No 179
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=25.22 E-value=3.9e+02 Score=29.04 Aligned_cols=10 Identities=10% Similarity=0.059 Sum_probs=3.7
Q ss_pred EeCCHHHHHH
Q 023688 71 TFKDPEAAMR 80 (278)
Q Consensus 71 ~F~~~e~A~~ 80 (278)
+|.-..+|.+
T Consensus 1087 klqIshEaAA 1096 (1282)
T KOG0921|consen 1087 KLQISHEAAA 1096 (1282)
T ss_pred eEeccHHHHH
Confidence 3432333333
No 180
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=23.70 E-value=85 Score=23.06 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.9
Q ss_pred cccEEEEEeCCHHHHHHHHhCCCCc
Q 023688 64 SKGYGFVTFKDPEAAMRACQNPSPV 88 (278)
Q Consensus 64 skG~aFV~F~~~e~A~~Al~~~~~~ 88 (278)
.+||-||+=.+++++.+||+.+.+.
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTE
T ss_pred CceEEEEEeCCHHHHHHHHhcccce
Confidence 6899999999999999999988754
No 181
>PRK11901 hypothetical protein; Reviewed
Probab=23.54 E-value=83 Score=29.50 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=39.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEE--EeCCHHHHHHHHhCCCCcc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV--TFKDPEAAMRACQNPSPVI 89 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV--~F~~~e~A~~Al~~~~~~i 89 (278)
..+|=|-. .-+++.|++|.++.+ +..++|..-...|+ ..|..| .|.++++|++|++.|-..|
T Consensus 245 ~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 245 HYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 33444433 456888888887775 45555554333233 234433 6899999999999998544
No 182
>PRK10905 cell division protein DamX; Validated
Probab=23.52 E-value=78 Score=29.65 Aligned_cols=55 Identities=18% Similarity=0.256 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEE--EeCCHHHHHHHHhCCCCcc
Q 023688 33 WETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV--TFKDPEAAMRACQNPSPVI 89 (278)
Q Consensus 33 ~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV--~F~~~e~A~~Al~~~~~~i 89 (278)
-.-+++.|++|..+.+ +....+......|+. .|-.+ .|.++++|++||+.|-..|
T Consensus 254 A~Ss~~~l~~fakKlg-L~~y~vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa~v 310 (328)
T PRK10905 254 SSSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPADV 310 (328)
T ss_pred ecCCHHHHHHHHHHcC-CCceEEEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCHHH
Confidence 3446788888888775 343333333222332 23332 6899999999999998544
No 183
>PHA01632 hypothetical protein
Probab=23.45 E-value=85 Score=21.66 Aligned_cols=20 Identities=5% Similarity=0.320 Sum_probs=16.4
Q ss_pred EEcCCCCCCCHHHHHHHHhh
Q 023688 27 FVGGLAWETQRDTMRRYFEQ 46 (278)
Q Consensus 27 fVgnLp~~~tee~L~~~F~~ 46 (278)
.|..+|..-+|++||+.+.+
T Consensus 20 lieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHH
Confidence 34588999999999988755
No 184
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=23.03 E-value=1.5e+02 Score=22.87 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=30.8
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCH
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP 75 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~ 75 (278)
..-||||+++..+.|.--+.+-+.++. -++.++. ..+. ..||.|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~-G~avmv~-~~~~-eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEE-GNVVMAW-ATNT-ESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCC-CcEEEEE-cCCC-CCCcEEEecCCC
Confidence 345999999999887655555554543 2333333 2223 349999988653
No 185
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=22.88 E-value=83 Score=22.29 Aligned_cols=33 Identities=27% Similarity=0.400 Sum_probs=24.1
Q ss_pred CHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEE
Q 023688 36 QRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFV 70 (278)
Q Consensus 36 tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV 70 (278)
-|.+|+++|-+--+|+++.|...|. ..+|-|||
T Consensus 31 ~e~eler~fl~~P~v~e~~l~EKKr--i~~G~gyV 63 (64)
T PF13046_consen 31 VEVELERHFLPLPEVKEVALYEKKR--IRKGAGYV 63 (64)
T ss_pred HHHHhhhhccCCCCceEEEEEEEEe--eeCCceeE
Confidence 3567888888888999998887653 34556665
No 186
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=22.75 E-value=2.4e+02 Score=18.66 Aligned_cols=55 Identities=15% Similarity=0.161 Sum_probs=38.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCH----HHHHHHHhCC
Q 023688 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDP----EAAMRACQNP 85 (278)
Q Consensus 25 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~----e~A~~Al~~~ 85 (278)
+|.|.||.=.--...|++.+.+.-.|.++.+-... +-.-|+|... ++..++|+..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~------~~v~v~~~~~~~~~~~i~~~i~~~ 59 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET------KTVTVTYDPDKTSIEKIIEAIEKA 59 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT------TEEEEEESTTTSCHHHHHHHHHHT
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC------CEEEEEEecCCCCHHHHHHHHHHh
Confidence 46677776666678899999999889988886543 3566777643 5566666543
No 187
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.59 E-value=1.5e+02 Score=29.32 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=42.9
Q ss_pred EEcCCCCCCCH---HHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeE
Q 023688 27 FVGGLAWETQR---DTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRA 94 (278)
Q Consensus 27 fVgnLp~~~te---e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l 94 (278)
+||||..-... ..|.++=++||.|-.+++-.. -.|...+.+.|++++.....++.+|..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~~---------~~Vviss~~~akE~l~~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGSV---------PVVVISSYEAAKEVLVKQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecCc---------eEEEECCHHHHHHHHHhCCccccCCCC
Confidence 57888754443 456666678999997776432 368888999999999987777777654
No 188
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=21.90 E-value=2e+02 Score=23.79 Aligned_cols=61 Identities=16% Similarity=0.201 Sum_probs=39.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRA 81 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~A 81 (278)
.-..+||.|.-+..--++--+++|+.|- .|.+|.+.++....+-+....+...+..+.++.
T Consensus 85 ~~~l~iyFG~~~~~~~~~lAr~lFe~F~~PlL~v~~~~~~~~w~i~~i~~~~~~~l~~~e~~ 146 (153)
T PF14401_consen 85 RFELSIYFGQTPDPRLERLARQLFERFPCPLLEVEFVRDDGKWRISSIKPLSLSELSEEEQD 146 (153)
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHHhCCCceEEEEEEecCCcEEEeeEeecChhhCCHHHHH
Confidence 3445788887755555666788999885 778888877654334455666666655554443
No 189
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=21.15 E-value=1.6e+02 Score=22.49 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=19.9
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEeCC
Q 023688 49 EILEAVVITDKNTGRSKGYGFVTFKD 74 (278)
Q Consensus 49 ~I~~v~i~~d~~tg~skG~aFV~F~~ 74 (278)
+|++|+|..-...|+-|++|=|+|++
T Consensus 2 ~ITdVri~~~~~~g~lka~asit~dd 27 (94)
T PRK13259 2 EVTDVRLRKVNTEGRMKAIVSITFDN 27 (94)
T ss_pred eEEEEEEEEeCCCCcEEEEEEEEECC
Confidence 47788776544458889999999987
No 190
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=20.50 E-value=2.8e+02 Score=20.24 Aligned_cols=57 Identities=11% Similarity=0.177 Sum_probs=39.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhh-CC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhC
Q 023688 25 KIFVGGLAWETQRDTMRRYFEQ-FG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQN 84 (278)
Q Consensus 25 ~lfVgnLp~~~tee~L~~~F~~-~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~ 84 (278)
+-|+-.++.+.+..+|++.++. |+ .|.+|..+.-+. ..-=|||++..-+.|.+.-..
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~---~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPR---GEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CceEEEEEECCCCcHHHHHHh
Confidence 4566678999999999999986 54 566665554331 222589999888777765443
Done!