Query 023688
Match_columns 278
No_of_seqs 365 out of 1882
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 11:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023688.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023688hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cqd_A RNA-binding region cont 99.9 2.4E-21 8.2E-26 152.0 15.6 88 15-102 9-96 (116)
2 1h2v_Z 20 kDa nuclear CAP bind 99.9 7.8E-22 2.7E-26 162.7 12.5 86 18-103 34-120 (156)
3 4fxv_A ELAV-like protein 1; RN 99.9 5.8E-22 2E-26 152.2 10.3 81 21-101 17-98 (99)
4 1u6f_A Tcubp1, RNA-binding pro 99.9 2.9E-21 9.9E-26 156.1 14.5 87 17-103 36-123 (139)
5 2dgo_A Cytotoxic granule-assoc 99.9 1.4E-20 4.7E-25 147.3 15.6 90 16-105 8-98 (115)
6 2cq0_A Eukaryotic translation 99.8 8.5E-21 2.9E-25 145.6 12.3 87 17-103 9-96 (103)
7 3s8s_A Histone-lysine N-methyl 99.8 4.4E-21 1.5E-25 150.2 10.8 82 21-102 4-86 (110)
8 2dgs_A DAZ-associated protein 99.8 1.2E-20 4E-25 143.8 12.8 86 18-104 5-91 (99)
9 2dnm_A SRP46 splicing factor; 99.8 6.1E-21 2.1E-25 146.4 10.9 87 17-103 7-94 (103)
10 2lxi_A RNA-binding protein 10; 99.8 1.8E-21 6.2E-26 147.0 7.4 81 23-103 1-84 (91)
11 1whw_A Hypothetical protein ri 99.8 1.6E-20 5.4E-25 143.0 12.5 86 19-104 4-90 (99)
12 1x5u_A Splicing factor 3B subu 99.8 1.7E-20 5.7E-25 144.3 12.7 87 17-103 9-96 (105)
13 2cpz_A CUG triplet repeat RNA- 99.8 8.9E-21 3E-25 148.5 11.0 88 17-104 19-107 (115)
14 1x4h_A RNA-binding protein 28; 99.8 1.7E-20 5.7E-25 145.6 12.5 92 14-105 6-104 (111)
15 2dgp_A Bruno-like 4, RNA bindi 99.8 8.7E-21 3E-25 146.2 10.6 90 15-104 5-98 (106)
16 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.1E-21 2.1E-25 146.1 9.5 87 19-105 8-95 (102)
17 1x5s_A Cold-inducible RNA-bind 99.8 1.2E-20 4E-25 144.4 11.0 85 19-103 8-93 (102)
18 2dng_A Eukaryotic translation 99.8 3.4E-20 1.1E-24 142.4 13.4 86 16-103 8-94 (103)
19 1wi8_A EIF-4B, eukaryotic tran 99.8 2E-20 7E-25 143.9 12.3 88 15-104 7-96 (104)
20 3s7r_A Heterogeneous nuclear r 99.8 1.8E-20 6.3E-25 139.3 11.4 82 18-99 6-87 (87)
21 2cph_A RNA binding motif prote 99.8 2E-20 6.7E-25 144.3 11.9 89 16-104 8-99 (107)
22 2do0_A HnRNP M, heterogeneous 99.8 6E-20 2.1E-24 143.2 14.5 87 17-104 9-96 (114)
23 2dnz_A Probable RNA-binding pr 99.8 2.4E-20 8.3E-25 140.7 11.7 82 21-102 3-85 (95)
24 2cqg_A TDP-43, TAR DNA-binding 99.8 5.4E-20 1.9E-24 141.1 13.7 87 17-104 9-95 (103)
25 2rs2_A Musashi-1, RNA-binding 99.8 1.7E-20 6E-25 146.1 11.0 88 17-104 19-106 (109)
26 2lkz_A RNA-binding protein 5; 99.8 2.9E-21 9.9E-26 147.5 6.3 83 19-101 5-94 (95)
27 2dh8_A DAZ-associated protein 99.8 1.6E-20 5.5E-25 144.6 10.6 87 16-103 9-96 (105)
28 2fy1_A RNA-binding motif prote 99.8 2.6E-20 9E-25 146.7 12.0 84 19-103 3-87 (116)
29 2d9p_A Polyadenylate-binding p 99.8 2.8E-20 9.5E-25 142.7 11.7 88 15-104 7-95 (103)
30 1x5t_A Splicing factor 3B subu 99.8 2.3E-20 7.7E-25 141.2 11.0 83 21-103 3-87 (96)
31 2cqc_A Arginine/serine-rich sp 99.8 2.5E-20 8.4E-25 140.5 11.0 87 15-101 7-94 (95)
32 2cpe_A RNA-binding protein EWS 99.8 2E-20 7E-25 145.8 10.6 89 15-103 7-104 (113)
33 2dhg_A TRNA selenocysteine ass 99.8 2.9E-20 9.8E-25 142.8 11.2 85 19-104 5-92 (104)
34 3ex7_B RNA-binding protein 8A; 99.8 1.6E-20 5.3E-25 149.3 10.0 91 14-104 13-104 (126)
35 2e5h_A Zinc finger CCHC-type a 99.8 2.5E-20 8.7E-25 140.4 10.6 85 16-100 9-94 (94)
36 2dnh_A Bruno-like 5, RNA bindi 99.8 6E-20 2E-24 141.2 12.4 86 18-104 10-99 (105)
37 2cpf_A RNA binding motif prote 99.8 3.4E-20 1.2E-24 140.9 10.8 83 21-103 3-89 (98)
38 3md1_A Nuclear and cytoplasmic 99.8 3.6E-20 1.2E-24 136.2 10.6 79 24-102 2-81 (83)
39 3bs9_A Nucleolysin TIA-1 isofo 99.8 3E-20 1E-24 137.8 9.9 82 21-102 4-86 (87)
40 1p27_B RNA-binding protein 8A; 99.8 3.5E-20 1.2E-24 142.7 10.6 89 15-103 15-104 (106)
41 2do4_A Squamous cell carcinoma 99.8 5.2E-20 1.8E-24 140.5 11.4 85 18-103 12-97 (100)
42 2cqi_A Nucleolysin TIAR; RNA r 99.8 9.4E-20 3.2E-24 139.7 12.9 86 17-104 9-95 (103)
43 2khc_A Testis-specific RNP-typ 99.8 4.3E-20 1.5E-24 145.1 10.8 83 18-100 35-118 (118)
44 2cq3_A RNA-binding protein 9; 99.8 1.3E-19 4.6E-24 138.9 13.3 89 15-105 7-96 (103)
45 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.8E-20 1.3E-24 136.7 9.3 81 20-100 4-85 (85)
46 4f25_A Polyadenylate-binding p 99.8 4.1E-20 1.4E-24 145.2 9.9 81 22-104 4-85 (115)
47 3p5t_L Cleavage and polyadenyl 99.8 8.1E-21 2.8E-25 142.6 5.5 80 24-103 2-84 (90)
48 1oo0_B CG8781-PA, drosophila Y 99.8 5.8E-20 2E-24 142.6 10.1 89 15-103 18-107 (110)
49 2div_A TRNA selenocysteine ass 99.8 1.1E-19 3.9E-24 138.2 11.0 84 19-102 5-94 (99)
50 3q2s_C Cleavage and polyadenyl 99.8 3.9E-20 1.3E-24 162.6 9.3 81 22-102 67-150 (229)
51 1x4b_A Heterogeneous nuclear r 99.8 5.9E-20 2E-24 144.0 9.3 85 19-103 23-107 (116)
52 2m2b_A RNA-binding protein 10; 99.8 3.3E-20 1.1E-24 148.9 8.1 85 17-102 17-108 (131)
53 1x4a_A Splicing factor, argini 99.8 2.1E-19 7.1E-24 139.3 12.3 85 15-102 14-99 (109)
54 2ywk_A Putative RNA-binding pr 99.8 8.5E-20 2.9E-24 137.7 9.8 84 17-101 10-94 (95)
55 2la6_A RNA-binding protein FUS 99.8 1E-19 3.4E-24 138.8 10.2 84 17-100 7-99 (99)
56 2cqp_A RNA-binding protein 12; 99.8 5.9E-20 2E-24 139.5 8.7 84 18-101 10-94 (98)
57 2x1f_A MRNA 3'-END-processing 99.8 9.5E-20 3.3E-24 138.1 9.9 81 23-103 2-83 (96)
58 2kxn_B Transformer-2 protein h 99.8 5.8E-20 2E-24 147.7 9.0 86 17-102 40-126 (129)
59 2dis_A Unnamed protein product 99.8 2.9E-19 9.9E-24 138.3 12.5 86 20-105 5-95 (109)
60 3ucg_A Polyadenylate-binding p 99.8 2.3E-19 7.8E-24 133.6 11.0 79 22-101 5-84 (89)
61 3ns6_A Eukaryotic translation 99.8 3.4E-20 1.2E-24 142.2 6.5 83 20-102 3-93 (100)
62 2cq4_A RNA binding motif prote 99.8 2.7E-20 9.2E-25 145.5 5.8 84 19-103 21-105 (114)
63 2jrs_A RNA-binding protein 39; 99.8 1.5E-19 5.1E-24 140.6 9.9 85 18-102 21-106 (108)
64 1uaw_A Mouse-musashi-1; RNP-ty 99.8 5.4E-20 1.8E-24 133.4 6.7 76 24-99 1-76 (77)
65 3n9u_C Cleavage and polyadenyl 99.8 1.7E-19 5.7E-24 149.7 10.5 80 22-101 54-136 (156)
66 1wg5_A Heterogeneous nuclear r 99.8 4.6E-19 1.6E-23 136.7 12.2 84 18-102 10-94 (104)
67 4a8x_A RNA-binding protein wit 99.8 1.4E-19 4.7E-24 134.4 8.9 81 22-102 3-85 (88)
68 1p1t_A Cleavage stimulation fa 99.8 6.5E-20 2.2E-24 140.6 6.7 86 19-104 4-90 (104)
69 1x4c_A Splicing factor, argini 99.8 9.7E-19 3.3E-23 135.6 13.5 78 19-103 11-94 (108)
70 3ulh_A THO complex subunit 4; 99.8 3.3E-19 1.1E-23 137.5 10.7 83 17-100 23-106 (107)
71 2kn4_A Immunoglobulin G-bindin 99.8 3.7E-19 1.3E-23 146.5 11.5 86 18-103 65-151 (158)
72 2cpy_A RNA-binding protein 12; 99.8 4.4E-20 1.5E-24 144.8 5.6 85 18-103 10-95 (114)
73 1wez_A HnRNP H', FTP-3, hetero 99.8 3.4E-19 1.2E-23 137.4 10.4 83 17-101 9-91 (102)
74 2jwn_A Embryonic polyadenylate 99.8 5E-19 1.7E-23 140.1 11.6 80 22-102 35-115 (124)
75 2cpi_A CCR4-NOT transcription 99.8 2.1E-19 7.1E-24 140.2 9.1 87 17-103 9-102 (111)
76 1s79_A Lupus LA protein; RRM, 99.8 3.2E-19 1.1E-23 138.0 9.7 81 19-101 7-88 (103)
77 1sjq_A Polypyrimidine tract-bi 99.8 2.3E-19 7.9E-24 139.4 8.8 81 19-105 12-95 (105)
78 2lea_A Serine/arginine-rich sp 99.8 2E-19 6.7E-24 145.6 8.7 86 18-103 42-128 (135)
79 2dgw_A Probable RNA-binding pr 99.8 8.5E-19 2.9E-23 131.4 11.6 81 19-102 6-87 (91)
80 2fc9_A NCL protein; structure 99.8 6.2E-19 2.1E-23 134.7 11.0 81 18-102 10-91 (101)
81 2dgu_A Heterogeneous nuclear r 99.8 1.1E-18 3.9E-23 133.9 12.4 80 19-106 7-87 (103)
82 2kt5_A RNA and export factor-b 99.8 1.3E-18 4.3E-23 138.0 13.0 84 19-103 31-115 (124)
83 2dgv_A HnRNP M, heterogeneous 99.8 5.9E-19 2E-23 132.3 10.5 82 19-102 4-86 (92)
84 2dgx_A KIAA0430 protein; RRM d 99.8 5.4E-19 1.8E-23 134.3 10.3 80 21-103 7-91 (96)
85 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 9.1E-19 3.1E-23 140.9 11.9 83 17-99 57-140 (140)
86 2mss_A Protein (musashi1); RNA 99.8 2.2E-19 7.4E-24 129.8 7.1 74 25-99 1-75 (75)
87 1iqt_A AUF1, heterogeneous nuc 99.8 1.4E-19 4.9E-24 130.6 6.0 75 25-99 1-75 (75)
88 2cq1_A PTB-like protein L; RRM 99.8 9.2E-19 3.2E-23 135.1 10.9 83 17-105 9-94 (101)
89 2ek1_A RNA-binding protein 12; 99.8 1.1E-19 3.9E-24 137.0 5.6 82 20-101 12-94 (95)
90 2fc8_A NCL protein; structure 99.8 8.5E-19 2.9E-23 134.0 10.2 83 17-102 9-92 (102)
91 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.8E-19 2.7E-23 146.3 10.8 89 17-105 66-155 (165)
92 1x4e_A RNA binding motif, sing 99.8 8.6E-20 2.9E-24 135.1 4.4 80 21-100 3-83 (85)
93 2ki2_A SS-DNA binding protein 99.8 1.1E-19 3.8E-24 135.9 4.9 79 24-103 2-81 (90)
94 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.9E-19 6.6E-24 137.8 6.2 83 18-102 14-98 (100)
95 1x4d_A Matrin 3; structural ge 99.8 7.2E-19 2.5E-23 136.0 9.4 80 18-103 10-93 (102)
96 1wex_A Hypothetical protein (r 99.8 2.6E-18 9E-23 133.2 11.8 79 19-103 11-92 (104)
97 3pgw_S U1-70K; protein-RNA com 99.8 3.2E-18 1.1E-22 163.7 14.9 87 19-105 98-185 (437)
98 2dnq_A RNA-binding protein 4B; 99.8 2.8E-18 9.4E-23 128.5 11.2 77 19-103 4-81 (90)
99 2err_A Ataxin-2-binding protei 99.8 8.8E-19 3E-23 136.3 8.5 84 17-102 23-107 (109)
100 2db1_A Heterogeneous nuclear r 99.8 1.1E-18 3.6E-23 137.9 8.6 83 18-102 12-98 (118)
101 1x5o_A RNA binding motif, sing 99.8 2.3E-18 7.9E-23 134.3 10.3 83 18-101 20-111 (114)
102 2lcw_A RNA-binding protein FUS 99.6 3.7E-20 1.3E-24 145.3 0.0 84 19-102 3-95 (116)
103 2ytc_A PRE-mRNA-splicing facto 99.8 4.2E-18 1.5E-22 125.7 11.1 78 17-100 6-85 (85)
104 2cpj_A Non-POU domain-containi 99.8 2.6E-18 8.8E-23 130.9 10.1 82 15-102 7-89 (99)
105 2hgn_A Heterogeneous nuclear r 99.8 2.9E-19 9.9E-24 145.7 4.8 82 18-102 41-123 (139)
106 2hgl_A HNRPF protein, heteroge 99.8 1.4E-18 4.9E-23 141.0 8.9 82 18-101 39-124 (136)
107 1x4g_A Nucleolysin TIAR; struc 99.8 3.5E-18 1.2E-22 132.5 10.6 80 19-104 21-101 (109)
108 2cpx_A Hypothetical protein FL 99.8 8.5E-19 2.9E-23 136.9 7.1 86 19-104 21-107 (115)
109 2hgm_A HNRPF protein, heteroge 99.8 1.6E-18 5.3E-23 139.1 8.4 81 19-101 38-120 (126)
110 2nlw_A Eukaryotic translation 99.8 2.5E-18 8.6E-23 132.7 9.3 82 19-102 11-100 (105)
111 2hvz_A Splicing factor, argini 99.8 2E-18 6.9E-23 131.8 8.6 75 24-103 1-76 (101)
112 1wel_A RNA-binding protein 12; 99.8 7.7E-19 2.6E-23 139.5 6.5 83 19-102 21-104 (124)
113 2ad9_A Polypyrimidine tract-bi 99.8 3E-18 1E-22 136.1 9.9 81 19-105 27-110 (119)
114 1fj7_A Nucleolin RBD1, protein 99.8 2.8E-19 9.5E-24 136.6 3.7 82 19-102 13-95 (101)
115 2e5g_A U6 snRNA-specific termi 99.8 7.8E-18 2.7E-22 127.1 11.5 78 20-103 5-83 (94)
116 2xs2_A Deleted in azoospermia- 99.8 1.8E-18 6.2E-23 132.3 8.1 84 19-104 5-88 (102)
117 2dnn_A RNA-binding protein 12; 99.7 3.2E-18 1.1E-22 133.8 9.1 80 20-101 13-92 (109)
118 1why_A Hypothetical protein ri 99.7 6.6E-18 2.3E-22 128.1 10.5 78 19-102 13-93 (97)
119 2dgt_A RNA-binding protein 30; 99.7 8.9E-18 3.1E-22 126.2 11.1 77 18-102 5-82 (92)
120 2e5j_A Methenyltetrahydrofolat 99.7 4.1E-18 1.4E-22 129.4 9.2 81 17-102 13-94 (97)
121 2cpd_A Apobec-1 stimulating pr 99.7 1.3E-17 4.6E-22 126.9 12.0 79 17-103 9-90 (99)
122 1l3k_A Heterogeneous nuclear r 99.7 7.7E-18 2.6E-22 141.9 11.4 86 20-105 101-186 (196)
123 2lmi_A GRSF-1, G-rich sequence 99.7 1.7E-18 5.7E-23 134.2 6.2 83 18-102 6-92 (107)
124 2dnp_A RNA-binding protein 14; 99.7 1.1E-17 3.7E-22 125.2 10.2 76 19-102 5-81 (90)
125 3r27_A HnRNP L, heterogeneous 99.7 9E-18 3.1E-22 129.3 9.9 79 18-102 16-97 (100)
126 2jvr_A Nucleolar protein 3; RN 99.7 3.5E-18 1.2E-22 134.1 7.6 79 20-102 25-105 (111)
127 1l3k_A Heterogeneous nuclear r 99.7 1.4E-17 4.7E-22 140.3 11.7 85 18-102 8-92 (196)
128 2jvo_A Nucleolar protein 3; nu 99.7 5.8E-18 2E-22 131.7 8.5 80 17-104 25-105 (108)
129 2krb_A Eukaryotic translation 99.7 3.8E-18 1.3E-22 125.4 7.1 72 23-96 1-80 (81)
130 4f02_A Polyadenylate-binding p 99.7 9.1E-18 3.1E-22 144.9 10.6 83 20-102 12-95 (213)
131 2la4_A Nuclear and cytoplasmic 99.7 3.9E-18 1.3E-22 130.2 7.2 77 19-101 23-100 (101)
132 2a3j_A U1 small nuclear ribonu 99.7 1.3E-17 4.4E-22 133.8 10.3 82 19-103 25-111 (127)
133 1fjc_A Nucleolin RBD2, protein 99.7 6.1E-18 2.1E-22 127.8 7.8 80 18-102 11-91 (96)
134 1x5p_A Negative elongation fac 99.7 4.3E-17 1.5E-21 123.7 12.5 80 17-104 9-89 (97)
135 1wf1_A RNA-binding protein RAL 99.7 2.6E-17 8.9E-22 127.7 11.5 75 20-102 24-100 (110)
136 2dha_A FLJ20171 protein; RRM d 99.7 5E-18 1.7E-22 135.5 7.4 81 20-101 20-104 (123)
137 2wbr_A GW182, gawky, LD47780P; 99.7 6.4E-18 2.2E-22 126.8 7.5 72 23-100 7-79 (89)
138 2cqh_A IGF-II mRNA-binding pro 99.7 9E-18 3.1E-22 126.3 8.1 78 19-103 4-84 (93)
139 3d2w_A TAR DNA-binding protein 99.7 1.3E-17 4.4E-22 125.3 8.6 80 18-103 6-85 (89)
140 2f3j_A RNA and export factor b 99.7 2.1E-17 7.1E-22 139.7 10.7 82 20-102 85-167 (177)
141 2kvi_A Nuclear polyadenylated 99.7 8E-18 2.7E-22 127.6 7.3 77 19-103 6-84 (96)
142 1x4f_A Matrin 3; structural ge 99.7 1.6E-17 5.6E-22 130.5 9.1 79 19-103 21-103 (112)
143 3md3_A Nuclear and cytoplasmic 99.7 2.7E-17 9.4E-22 134.3 10.8 83 18-100 82-165 (166)
144 2e44_A Insulin-like growth fac 99.7 2.1E-17 7.2E-22 124.8 9.2 80 19-102 11-92 (96)
145 1wf0_A TDP-43, TAR DNA-binding 99.7 1E-17 3.5E-22 124.8 7.3 77 21-103 3-79 (88)
146 3lqv_A PRE-mRNA branch site pr 99.7 1.5E-17 5E-22 129.9 7.9 81 20-103 5-86 (115)
147 1nu4_A U1A RNA binding domain; 99.7 1.2E-17 4.1E-22 126.3 7.1 82 19-103 4-90 (97)
148 2xnq_A Nuclear polyadenylated 99.7 4.1E-17 1.4E-21 124.3 10.0 77 18-102 17-95 (97)
149 2i2y_A Fusion protein consists 99.7 2.8E-17 9.5E-22 134.4 9.5 81 17-102 67-148 (150)
150 2dnl_A Cytoplasmic polyadenyla 99.7 1.3E-17 4.3E-22 130.6 7.0 79 20-100 5-86 (114)
151 3beg_B Splicing factor, argini 99.7 1.8E-17 6.2E-22 130.1 7.7 75 20-101 13-93 (115)
152 2qfj_A FBP-interacting repress 99.7 5.4E-17 1.8E-21 138.7 11.2 82 21-102 123-205 (216)
153 1fxl_A Paraneoplastic encephal 99.7 5.2E-17 1.8E-21 132.8 10.6 80 23-102 2-82 (167)
154 2j8a_A Histone-lysine N-methyl 99.7 2.6E-17 8.9E-22 131.7 8.2 79 24-102 3-96 (136)
155 1whx_A Hypothetical protein ri 99.7 3E-17 1E-21 128.1 8.2 78 20-103 7-85 (111)
156 1b7f_A Protein (SXL-lethal pro 99.7 5.2E-17 1.8E-21 133.3 10.0 81 22-102 2-83 (168)
157 2yh0_A Splicing factor U2AF 65 99.7 9.3E-17 3.2E-21 135.4 11.0 84 20-103 111-195 (198)
158 1sjr_A Polypyrimidine tract-bi 99.7 1.9E-16 6.4E-21 132.2 11.8 81 19-103 42-125 (164)
159 3egn_A RNA-binding protein 40; 99.7 8.4E-18 2.9E-22 136.5 3.2 86 20-105 42-133 (143)
160 1wg1_A KIAA1579 protein, homol 99.7 5.2E-17 1.8E-21 121.2 6.9 75 21-102 3-78 (88)
161 2cjk_A Nuclear polyadenylated 99.7 6.3E-17 2.2E-21 132.9 8.1 80 22-102 86-166 (167)
162 2g4b_A Splicing factor U2AF 65 99.7 1.5E-16 5E-21 131.3 10.3 80 21-100 92-172 (172)
163 2cjk_A Nuclear polyadenylated 99.7 1.1E-16 3.8E-21 131.3 8.7 79 22-101 2-80 (167)
164 2voo_A Lupus LA protein; RNA-b 99.7 3E-16 1E-20 134.3 11.4 80 22-102 108-187 (193)
165 2cq2_A Hypothetical protein LO 99.7 1.8E-16 6E-21 124.9 9.1 78 19-102 21-106 (114)
166 4f02_A Polyadenylate-binding p 99.7 1.4E-16 4.9E-21 137.4 9.0 79 22-102 102-181 (213)
167 3md3_A Nuclear and cytoplasmic 99.7 3E-16 1E-20 128.1 9.7 78 24-102 1-79 (166)
168 2qfj_A FBP-interacting repress 99.7 2E-16 7E-21 135.1 8.9 82 21-102 26-108 (216)
169 1b7f_A Protein (SXL-lethal pro 99.6 6.3E-16 2.1E-20 126.8 10.7 81 19-99 85-168 (168)
170 2hzc_A Splicing factor U2AF 65 99.6 5E-16 1.7E-20 114.8 8.7 72 20-98 3-86 (87)
171 2bz2_A Negative elongation fac 99.6 3.8E-16 1.3E-20 123.9 7.9 78 18-103 34-112 (121)
172 1fxl_A Paraneoplastic encephal 99.6 1E-15 3.4E-20 125.1 9.9 80 20-99 85-167 (167)
173 2e5i_A Heterogeneous nuclear r 99.6 4.1E-15 1.4E-19 118.8 13.1 78 20-103 22-103 (124)
174 3nmr_A Cugbp ELAV-like family 99.6 9E-16 3.1E-20 126.5 9.6 81 22-102 2-88 (175)
175 3zzy_A Polypyrimidine tract-bi 99.6 2.1E-15 7.2E-20 121.3 10.9 79 20-103 25-107 (130)
176 3nmr_A Cugbp ELAV-like family 99.6 1.4E-15 4.7E-20 125.4 9.7 81 19-100 91-175 (175)
177 3pgw_A U1-A; protein-RNA compl 99.6 1.9E-15 6.5E-20 134.9 10.8 82 19-103 5-91 (282)
178 1fje_B Nucleolin RBD12, protei 99.6 1E-15 3.5E-20 126.8 8.3 80 18-102 94-174 (175)
179 2diu_A KIAA0430 protein; struc 99.6 3.2E-15 1.1E-19 113.2 9.9 72 23-104 8-86 (96)
180 3tyt_A Heterogeneous nuclear r 99.6 1.8E-15 6E-20 130.5 9.7 76 22-102 3-80 (205)
181 2pe8_A Splicing factor 45; RRM 99.6 3.6E-15 1.2E-19 115.6 9.3 82 20-101 5-93 (105)
182 2adc_A Polypyrimidine tract-bi 99.6 4.9E-15 1.7E-19 129.1 9.8 80 18-102 29-110 (229)
183 2dit_A HIV TAT specific factor 99.6 1.8E-14 6.1E-19 112.3 12.0 82 18-103 10-103 (112)
184 3u1l_A PRE-mRNA-splicing facto 99.6 4E-15 1.4E-19 131.4 8.8 79 19-103 130-230 (240)
185 2ghp_A U4/U6 snRNA-associated 99.6 4.7E-15 1.6E-19 133.0 9.3 83 19-102 206-291 (292)
186 3pgw_A U1-A; protein-RNA compl 99.6 1.6E-14 5.6E-19 128.8 12.2 77 19-100 203-281 (282)
187 3smz_A Protein raver-1, ribonu 99.6 1.5E-14 5.2E-19 129.1 11.4 81 22-102 94-175 (284)
188 1fje_B Nucleolin RBD12, protei 99.6 1.4E-15 4.8E-20 126.0 4.1 83 18-102 8-91 (175)
189 3smz_A Protein raver-1, ribonu 99.5 1.3E-14 4.5E-19 129.6 9.3 85 19-104 180-266 (284)
190 1qm9_A Polypyrimidine tract-bi 99.5 1.4E-14 4.8E-19 122.5 7.3 77 22-103 2-80 (198)
191 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.2E-13 1.1E-17 103.7 13.3 76 22-103 9-91 (100)
192 3sde_A Paraspeckle component 1 99.5 3.9E-14 1.3E-18 125.8 9.4 83 13-101 12-95 (261)
193 3sde_A Paraspeckle component 1 99.5 4.1E-14 1.4E-18 125.6 8.7 81 22-103 95-180 (261)
194 3tyt_A Heterogeneous nuclear r 99.5 2.4E-14 8.1E-19 123.4 6.4 77 21-99 121-204 (205)
195 2ghp_A U4/U6 snRNA-associated 99.5 4.8E-14 1.6E-18 126.4 7.8 82 22-104 116-199 (292)
196 2g4b_A Splicing factor U2AF 65 99.5 1.6E-13 5.4E-18 112.9 10.0 74 22-102 3-88 (172)
197 1qm9_A Polypyrimidine tract-bi 99.5 8.4E-14 2.9E-18 117.7 8.4 77 21-102 118-197 (198)
198 1jmt_A Splicing factor U2AF 35 99.5 2.1E-14 7.2E-19 111.0 4.1 71 28-99 20-103 (104)
199 3v4m_A Splicing factor U2AF 65 99.5 9.5E-14 3.3E-18 107.5 7.7 81 21-101 3-96 (105)
200 2adc_A Polypyrimidine tract-bi 99.5 1.4E-13 4.8E-18 119.8 9.7 77 21-102 149-228 (229)
201 2yh0_A Splicing factor U2AF 65 99.5 1.5E-13 5E-18 115.6 9.2 74 22-102 3-88 (198)
202 3ue2_A Poly(U)-binding-splicin 99.5 1.1E-13 3.7E-18 109.5 7.8 80 22-101 19-108 (118)
203 3tht_A Alkylated DNA repair pr 99.3 2.1E-12 7.1E-17 119.7 8.6 77 18-100 13-97 (345)
204 3s6e_A RNA-binding protein 39; 99.2 2.7E-11 9.2E-16 95.1 7.4 77 21-101 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.1 1.4E-10 4.7E-15 91.9 8.9 78 17-100 12-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.1 7E-10 2.4E-14 83.2 9.0 73 23-104 7-88 (91)
207 3dxb_A Thioredoxin N-terminall 98.9 4.4E-09 1.5E-13 90.8 7.6 66 35-100 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.8 4.1E-09 1.4E-13 79.4 5.1 71 22-101 14-94 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.2 3.2E-06 1.1E-10 65.1 7.6 72 22-99 20-97 (117)
210 2dhx_A Poly (ADP-ribose) polym 98.1 5.7E-05 2E-09 57.5 11.8 73 20-100 5-82 (104)
211 1wey_A Calcipressin 1; structu 97.5 0.00045 1.5E-08 52.7 8.3 74 23-102 5-84 (104)
212 1whv_A Poly(A)-specific ribonu 97.4 0.00049 1.7E-08 51.8 7.1 58 19-85 12-69 (100)
213 1wwh_A Nucleoporin 35, nucleop 97.2 0.0024 8.1E-08 49.9 9.4 74 19-99 20-94 (119)
214 3ctr_A Poly(A)-specific ribonu 97.0 0.00089 3E-08 50.6 5.0 53 24-85 7-59 (101)
215 1uw4_A UPF3X; nonsense mediate 96.9 0.0021 7.3E-08 47.8 6.3 63 24-86 2-66 (91)
216 3p3d_A Nucleoporin 53; structu 96.3 0.004 1.4E-07 49.4 4.6 78 23-101 7-98 (132)
217 3pq1_A Poly(A) RNA polymerase; 95.8 0.0038 1.3E-07 59.6 3.0 57 23-85 53-109 (464)
218 2l08_A Regulator of nonsense t 95.5 0.014 4.9E-07 43.8 4.4 65 23-87 9-75 (97)
219 2kn4_A Immunoglobulin G-bindin 95.1 0.011 3.7E-07 47.3 2.8 33 52-86 2-34 (158)
220 2i2y_A Fusion protein consists 92.8 0.046 1.6E-06 43.3 2.2 39 62-101 10-50 (150)
221 3d45_A Poly(A)-specific ribonu 91.2 0.35 1.2E-05 46.5 6.8 57 21-86 438-494 (507)
222 2g0c_A ATP-dependent RNA helic 69.5 7.7 0.00026 26.7 4.9 67 25-100 2-75 (76)
223 4f25_A Polyadenylate-binding p 62.6 1.6 5.4E-05 32.7 0.0 20 20-39 94-113 (115)
224 3lpe_A Putative transcription 43.3 67 0.0023 23.0 6.2 47 36-87 21-72 (92)
225 2cu1_A Mitogen-activated prote 38.4 78 0.0027 23.5 5.8 65 30-102 23-88 (103)
226 3fry_A Probable copper-exporti 37.7 52 0.0018 21.5 4.7 58 22-86 5-62 (73)
227 3ts2_A Protein LIN-28 homolog 31.4 7.3 0.00025 31.0 -0.8 28 38-73 2-29 (148)
228 4e8u_A Putative uncharacterize 29.6 1.6E+02 0.0055 23.8 7.0 57 25-84 14-82 (172)
229 2i9x_A Putative septation prot 27.6 79 0.0027 22.7 4.3 26 49-74 5-30 (87)
230 2lfv_A Protein DAMX; cell divi 30.4 16 0.00054 27.4 0.0 58 30-89 29-88 (106)
231 2g1d_A 30S ribosomal protein S 24.1 36 0.0012 25.1 1.9 47 33-80 29-80 (98)
232 2ia9_A Putative septation prot 23.7 98 0.0034 22.8 4.3 26 49-74 5-30 (100)
233 3mfb_A Uncharacterized protein 23.3 1.2E+02 0.0042 24.2 5.1 37 35-71 3-42 (157)
234 2e5p_A Protein PHF1, PHD finge 23.2 40 0.0014 23.1 1.8 11 65-75 37-47 (68)
235 2i9z_A Putative septation prot 23.2 1E+02 0.0036 22.9 4.3 26 49-74 5-30 (105)
236 1ywx_A 30S ribosomal protein S 22.6 2.3E+02 0.008 20.8 6.2 47 33-80 28-79 (102)
237 1xn9_A 30S ribosomal protein S 21.9 2.4E+02 0.0082 20.7 6.3 48 33-81 28-80 (101)
238 4bby_A Alkyldihydroxyacetoneph 21.8 53 0.0018 32.2 3.2 54 31-85 351-408 (658)
239 3swz_A Steroid 17-alpha-hydrox 21.5 89 0.0031 28.3 4.6 58 26-92 17-78 (494)
240 2v94_A RPS24, 30S ribosomal pr 21.4 2.2E+02 0.0077 21.1 5.9 47 33-80 37-88 (107)
241 3bgu_A Ferredoxin-like protein 21.2 2.5E+02 0.0085 20.6 6.9 60 23-83 22-91 (116)
242 4eyt_A Telomerase associated p 21.2 2.4E+02 0.0083 20.5 7.9 72 19-98 8-87 (129)
243 4a8j_B Elongator complex prote 21.0 2E+02 0.0067 25.1 6.2 47 24-70 167-221 (270)
244 2m0o_A PHD finger protein 1; t 20.1 50 0.0017 23.3 1.8 11 65-75 54-64 (79)
No 1
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.4e-21 Score=151.97 Aligned_cols=88 Identities=64% Similarity=1.088 Sum_probs=82.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeE
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRA 94 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l 94 (278)
.....+...++|||+|||++++|++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++++|+|++|
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l 88 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPIIDGRKA 88 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSCEETTEEC
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCCcCCCEEE
Confidence 34567778899999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred EEEEccCC
Q 023688 95 NCNLASLG 102 (278)
Q Consensus 95 ~V~~A~~~ 102 (278)
+|++|+.+
T Consensus 89 ~V~~a~~~ 96 (116)
T 2cqd_A 89 NVNLAYLG 96 (116)
T ss_dssp EEEESTTT
T ss_pred EEEEcccC
Confidence 99999754
No 2
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.87 E-value=7.8e-22 Score=162.71 Aligned_cols=86 Identities=19% Similarity=0.235 Sum_probs=79.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
......++|||+|||++++|++|+++|++||+|++|+|+.++.+++++|||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 34 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 113 (156)
T 1h2v_Z 34 KLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRT 113 (156)
T ss_dssp TTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999999999999999999999999999999999999999988 6799999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
+||++..
T Consensus 114 ~~a~~~~ 120 (156)
T 1h2v_Z 114 DWDAGFK 120 (156)
T ss_dssp EEESCCC
T ss_pred EECCCCC
Confidence 9998643
No 3
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.87 E-value=5.8e-22 Score=152.21 Aligned_cols=81 Identities=28% Similarity=0.411 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
.+.++|||+|||++++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++|
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 345789999999999999999999999999999999999999999999999999999999999988 6799999999999
Q ss_pred cC
Q 023688 100 SL 101 (278)
Q Consensus 100 ~~ 101 (278)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 4
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.86 E-value=2.9e-21 Score=156.06 Aligned_cols=87 Identities=25% Similarity=0.436 Sum_probs=80.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
..++...++|||+|||++++|++|+++|++||+|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 115 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLK 115 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3456677899999999999999999999999999999999999999999999999999999999999988 579999999
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|++++.+.
T Consensus 116 v~~a~~~~ 123 (139)
T 1u6f_A 116 VALAASGH 123 (139)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99998653
No 5
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.86 E-value=1.4e-20 Score=147.29 Aligned_cols=90 Identities=32% Similarity=0.490 Sum_probs=82.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeE
Q 023688 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRA 94 (278)
Q Consensus 16 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l 94 (278)
...+....++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 87 (115)
T 2dgo_A 8 QKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 87 (115)
T ss_dssp SCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34566778899999999999999999999999999999999999899999999999999999999999988 67999999
Q ss_pred EEEEccCCCCC
Q 023688 95 NCNLASLGAHK 105 (278)
Q Consensus 95 ~V~~A~~~~~~ 105 (278)
+|++++.+...
T Consensus 88 ~V~~a~~~~~~ 98 (115)
T 2dgo_A 88 RTNWATRKPPA 98 (115)
T ss_dssp EEEESSCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999866443
No 6
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.5e-21 Score=145.64 Aligned_cols=87 Identities=29% Similarity=0.376 Sum_probs=80.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
..+....++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 4456678999999999999999999999999999999999999899999999999999999999999888 679999999
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|++++++.
T Consensus 89 v~~a~~~~ 96 (103)
T 2cq0_A 89 VEWAKPST 96 (103)
T ss_dssp EEESSCCC
T ss_pred EEECCCCC
Confidence 99997653
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.85 E-value=4.4e-21 Score=150.17 Aligned_cols=82 Identities=16% Similarity=0.260 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+||+++++|++|+++|++||.|++|+|++|+.|+++||||||+|++.++|++||+.+| .+|+|++|+|++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 456799999999999999999999999999999999999999999999999999999999999998 6799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
..+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 644
No 8
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=143.85 Aligned_cols=86 Identities=30% Similarity=0.565 Sum_probs=79.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
..+...++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+ ++ ..|+|++|+|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345677899999999999999999999999999999999999999999999999999999999999 67 6899999999
Q ss_pred EEccCCCC
Q 023688 97 NLASLGAH 104 (278)
Q Consensus 97 ~~A~~~~~ 104 (278)
++++++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99986543
No 9
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=6.1e-21 Score=146.44 Aligned_cols=87 Identities=25% Similarity=0.458 Sum_probs=80.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.......++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 3455667899999999999999999999999999999999999999999999999999999999999888 679999999
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|++|+...
T Consensus 87 V~~a~~~~ 94 (103)
T 2dnm_A 87 VQVARYGR 94 (103)
T ss_dssp EEECSSCC
T ss_pred EEECCcCC
Confidence 99998653
No 10
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=147.01 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=75.3
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-C-ccCCeeEEEEEc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-P-VIDGRRANCNLA 99 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~-~i~Gr~l~V~~A 99 (278)
+++|||+|||++++|++|+++|++|| .|++|+|++|+.|+++||||||+|.+.++|++||+.++ . .|+|++|+|++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 36899999999999999999999999 89999999999999999999999999999999999875 3 599999999999
Q ss_pred cCCC
Q 023688 100 SLGA 103 (278)
Q Consensus 100 ~~~~ 103 (278)
+++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8654
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.6e-20 Score=142.97 Aligned_cols=86 Identities=24% Similarity=0.448 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999999899999999999999999999999888 57999999999
Q ss_pred EccCCCC
Q 023688 98 LASLGAH 104 (278)
Q Consensus 98 ~A~~~~~ 104 (278)
+++++..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9986543
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=144.34 Aligned_cols=87 Identities=26% Similarity=0.349 Sum_probs=80.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.......++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456677899999999999999999999999999999999999899999999999999999999999988 679999999
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|++++++.
T Consensus 89 v~~a~~~~ 96 (105)
T 1x5u_A 89 VNKASAHN 96 (105)
T ss_dssp EEETTTTS
T ss_pred EEECCCCC
Confidence 99997653
No 13
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=8.9e-21 Score=148.49 Aligned_cols=88 Identities=26% Similarity=0.362 Sum_probs=80.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...+...++|||+|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 98 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 98 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455567899999999999999999999999999999999999899999999999999999999999988 679999999
Q ss_pred EEEccCCCC
Q 023688 96 CNLASLGAH 104 (278)
Q Consensus 96 V~~A~~~~~ 104 (278)
|++++++..
T Consensus 99 V~~a~~~~~ 107 (115)
T 2cpz_A 99 VQLKRSKND 107 (115)
T ss_dssp EECCCCSCC
T ss_pred EEEcCCCCc
Confidence 999986543
No 14
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=1.7e-20 Score=145.58 Aligned_cols=92 Identities=24% Similarity=0.383 Sum_probs=82.5
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC------C
Q 023688 14 HPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS------P 87 (278)
Q Consensus 14 ~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~------~ 87 (278)
..........++|||+|||+++++++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++ .
T Consensus 6 ~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 6 SGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3444566778899999999999999999999999999999999999999999999999999999999999886 4
Q ss_pred -ccCCeeEEEEEccCCCCC
Q 023688 88 -VIDGRRANCNLASLGAHK 105 (278)
Q Consensus 88 -~i~Gr~l~V~~A~~~~~~ 105 (278)
.|+|++|+|++++++...
T Consensus 86 ~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 86 LKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp EESSSCEEEEECCCCCCCC
T ss_pred cEEcCEEEEEEECCCCccC
Confidence 699999999999865433
No 15
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.84 E-value=8.7e-21 Score=146.18 Aligned_cols=90 Identities=26% Similarity=0.436 Sum_probs=81.3
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc---C
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI---D 90 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i---~ 90 (278)
.....+...++|||+|||++++|++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.++ ..+ +
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 344567778999999999999999999999999999999999999999999999999999999999999888 455 8
Q ss_pred CeeEEEEEccCCCC
Q 023688 91 GRRANCNLASLGAH 104 (278)
Q Consensus 91 Gr~l~V~~A~~~~~ 104 (278)
|++|+|++++++..
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 89999999986543
No 16
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-21 Score=146.06 Aligned_cols=87 Identities=32% Similarity=0.425 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999888 57999999999
Q ss_pred EccCCCCC
Q 023688 98 LASLGAHK 105 (278)
Q Consensus 98 ~A~~~~~~ 105 (278)
+++++..+
T Consensus 88 ~a~~~~~~ 95 (102)
T 2cqb_A 88 LAKPMRIK 95 (102)
T ss_dssp ECCCCCCC
T ss_pred eCCCCCCC
Confidence 99865443
No 17
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=144.44 Aligned_cols=85 Identities=34% Similarity=0.643 Sum_probs=79.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
...+.++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567899999999999999999999999999999999999999999999999999999999999888 67999999999
Q ss_pred EccCCC
Q 023688 98 LASLGA 103 (278)
Q Consensus 98 ~A~~~~ 103 (278)
+++++.
T Consensus 88 ~a~~~~ 93 (102)
T 1x5s_A 88 QAGKSS 93 (102)
T ss_dssp EEECCC
T ss_pred ECCCCC
Confidence 998654
No 18
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.84 E-value=3.4e-20 Score=142.41 Aligned_cols=86 Identities=19% Similarity=0.356 Sum_probs=78.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeE
Q 023688 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRA 94 (278)
Q Consensus 16 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l 94 (278)
....+...++|||+|||++++|++|+++|++|| |++|+|++|+.+++++|||||+|.+.++|++|| .++ ..|+|++|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 8 KELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp CCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 344566788999999999999999999999996 999999999999999999999999999999999 677 67999999
Q ss_pred EEEEccCCC
Q 023688 95 NCNLASLGA 103 (278)
Q Consensus 95 ~V~~A~~~~ 103 (278)
+|++++++.
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dng_A 86 RVDIAEGRK 94 (103)
T ss_dssp EEEECCCCC
T ss_pred EEEEecCCC
Confidence 999997653
No 19
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=143.86 Aligned_cols=88 Identities=16% Similarity=0.403 Sum_probs=79.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHhCCC-CccCCe
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFKDPEAAMRACQNPS-PVIDGR 92 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t-g~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr 92 (278)
.....+...++|||+|||+++++++|+++|++|| |++|+|+.++.+ ++++|||||+|.+.++|++|| .++ ..|+|+
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 3344566779999999999999999999999999 999999999988 999999999999999999999 777 679999
Q ss_pred eEEEEEccCCCC
Q 023688 93 RANCNLASLGAH 104 (278)
Q Consensus 93 ~l~V~~A~~~~~ 104 (278)
+|+|++++++..
T Consensus 85 ~l~V~~a~~~~~ 96 (104)
T 1wi8_A 85 RIRVDVADQAQD 96 (104)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999986544
No 20
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.84 E-value=1.8e-20 Score=139.30 Aligned_cols=82 Identities=37% Similarity=0.768 Sum_probs=76.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCN 97 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 97 (278)
..+...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++.+|+|++|+|+
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPK 85 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEEEEEE
Confidence 45667789999999999999999999999999999999999999999999999999999999999987778999999999
Q ss_pred Ec
Q 023688 98 LA 99 (278)
Q Consensus 98 ~A 99 (278)
+|
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 21
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=144.27 Aligned_cols=89 Identities=25% Similarity=0.405 Sum_probs=81.4
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeC-CCCCCcccEEEEEeCCHHHHHHHHhCC-C-CccCCe
Q 023688 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITD-KNTGRSKGYGFVTFKDPEAAMRACQNP-S-PVIDGR 92 (278)
Q Consensus 16 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d-~~tg~skG~aFV~F~~~e~A~~Al~~~-~-~~i~Gr 92 (278)
....+...++|||+|||+++++++|+++|++||.|++|+|+.+ +.+++++|||||+|.+.++|++||+.+ + ..|+|+
T Consensus 8 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~ 87 (107)
T 2cph_A 8 QVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGR 87 (107)
T ss_dssp SSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSC
T ss_pred ccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCC
Confidence 3456677889999999999999999999999999999999999 788999999999999999999999998 6 679999
Q ss_pred eEEEEEccCCCC
Q 023688 93 RANCNLASLGAH 104 (278)
Q Consensus 93 ~l~V~~A~~~~~ 104 (278)
+|+|++++++..
T Consensus 88 ~l~v~~a~~~~~ 99 (107)
T 2cph_A 88 RLVLEWADSEVT 99 (107)
T ss_dssp BCEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999986543
No 22
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=6e-20 Score=143.23 Aligned_cols=87 Identities=21% Similarity=0.328 Sum_probs=78.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.......++|||+|||+++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (114)
T 2do0_A 9 LQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMH 87 (114)
T ss_dssp CCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEE
Confidence 3455667899999999999999999999999999999999998 59999999999999999999999888 679999999
Q ss_pred EEEccCCCC
Q 023688 96 CNLASLGAH 104 (278)
Q Consensus 96 V~~A~~~~~ 104 (278)
|++++....
T Consensus 88 v~~a~~~~~ 96 (114)
T 2do0_A 88 VKMDERALP 96 (114)
T ss_dssp EEECSCCCC
T ss_pred EEEcccCCC
Confidence 999975433
No 23
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=140.74 Aligned_cols=82 Identities=37% Similarity=0.624 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 456899999999999999999999999999999999999999999999999999999999999888 6799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
+++
T Consensus 83 ~~~ 85 (95)
T 2dnz_A 83 TER 85 (95)
T ss_dssp SCC
T ss_pred ccc
Confidence 754
No 24
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.4e-20 Score=141.10 Aligned_cols=87 Identities=33% Similarity=0.647 Sum_probs=79.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANC 96 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 96 (278)
...+...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+. .+.|+|++|+|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~g~~l~v 87 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ-RHMIDGRWCDC 87 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS-CEEETTEEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc-CCeeCCeEEEE
Confidence 44566778999999999999999999999999999999999999999999999999999999999995 45799999999
Q ss_pred EEccCCCC
Q 023688 97 NLASLGAH 104 (278)
Q Consensus 97 ~~A~~~~~ 104 (278)
+++.++..
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqg_A 88 KLPNSKQS 95 (103)
T ss_dssp ECCCTTCC
T ss_pred EecCCCCc
Confidence 99986543
No 25
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.83 E-value=1.7e-20 Score=146.10 Aligned_cols=88 Identities=33% Similarity=0.605 Sum_probs=77.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANC 96 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 96 (278)
...+...++|||+|||++++|++|+++|++||.|++|+|++|+.+++++|||||+|.+.++|++||+.++..|+|+.|+|
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V 98 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDP 98 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999999887899999999
Q ss_pred EEccCCCC
Q 023688 97 NLASLGAH 104 (278)
Q Consensus 97 ~~A~~~~~ 104 (278)
+++.++..
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99986543
No 26
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-21 Score=147.52 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC--EEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-----ccCC
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGE--ILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-----VIDG 91 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~--I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-----~i~G 91 (278)
....-.+|||+|||+++||++|+++|++||. |.+|+|++|+.|+++||||||+|.+.++|++||+.++. .|+|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4556679999999999999999999999995 67999999999999999999999999999999998873 4899
Q ss_pred eeEEEEEccC
Q 023688 92 RRANCNLASL 101 (278)
Q Consensus 92 r~l~V~~A~~ 101 (278)
|+|.|++|+.
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999963
No 27
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=144.57 Aligned_cols=87 Identities=36% Similarity=0.747 Sum_probs=80.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeE
Q 023688 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRA 94 (278)
Q Consensus 16 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l 94 (278)
....+...++|||+|||+++++++|+++|++||+|++|+|+.++.+++++|||||+|++.++|++||+. + ..|+|++|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l 87 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNI 87 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEE
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEE
Confidence 345677789999999999999999999999999999999999999999999999999999999999999 6 67999999
Q ss_pred EEEEccCCC
Q 023688 95 NCNLASLGA 103 (278)
Q Consensus 95 ~V~~A~~~~ 103 (278)
+|++++++.
T Consensus 88 ~V~~a~~~~ 96 (105)
T 2dh8_A 88 DPKPCTPRG 96 (105)
T ss_dssp BCCCSCCSS
T ss_pred EEEEccCCC
Confidence 999997654
No 28
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.83 E-value=2.6e-20 Score=146.75 Aligned_cols=84 Identities=29% Similarity=0.560 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
++...++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45567899999999999999999999999999999999998 89999999999999999999999988 67999999999
Q ss_pred EccCCC
Q 023688 98 LASLGA 103 (278)
Q Consensus 98 ~A~~~~ 103 (278)
+++...
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 997543
No 29
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=142.74 Aligned_cols=88 Identities=27% Similarity=0.467 Sum_probs=80.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
.....+...++|||+|||+++++++|+++|++||.|++|+|+.+ +++++|||||+|.+.++|++||+.++ ..|+|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 84 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 34456678889999999999999999999999999999999998 79999999999999999999999888 6799999
Q ss_pred EEEEEccCCCC
Q 023688 94 ANCNLASLGAH 104 (278)
Q Consensus 94 l~V~~A~~~~~ 104 (278)
|+|++++++..
T Consensus 85 l~V~~a~~~~~ 95 (103)
T 2d9p_A 85 LYVALAQRKEE 95 (103)
T ss_dssp CEEEECSSCCC
T ss_pred EEEEEeccccc
Confidence 99999986543
No 30
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.3e-20 Score=141.17 Aligned_cols=83 Identities=28% Similarity=0.426 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
...++|||+|||+++++++|+++|++||.|++| +|++|+.+++++|||||+|.+.++|++||+.++ ..|+|++|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 456899999999999999999999999999999 999998899999999999999999999999998 679999999999
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
++++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 97653
No 31
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.5e-20 Score=140.55 Aligned_cols=87 Identities=26% Similarity=0.399 Sum_probs=80.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
.........++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 7 GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 334566778899999999999999999999999999999999999999999999999999999999999988 5799999
Q ss_pred EEEEEccC
Q 023688 94 ANCNLASL 101 (278)
Q Consensus 94 l~V~~A~~ 101 (278)
|+|++|+.
T Consensus 87 l~v~~a~~ 94 (95)
T 2cqc_A 87 IRVSGPSS 94 (95)
T ss_dssp EEEECCSC
T ss_pred EEEEecCC
Confidence 99999864
No 32
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2e-20 Score=145.84 Aligned_cols=89 Identities=26% Similarity=0.366 Sum_probs=81.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE--------EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEIL--------EAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~--------~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
....++...++|||+|||+++++++|+++|++||.|+ +|+|+.|+.+++++|||||+|.+.++|++||+.++
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~ 86 (113)
T 2cpe_A 7 GDPDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 86 (113)
T ss_dssp CCCCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHT
T ss_pred CCcccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcC
Confidence 3345677889999999999999999999999999999 69999999899999999999999999999999888
Q ss_pred -CccCCeeEEEEEccCCC
Q 023688 87 -PVIDGRRANCNLASLGA 103 (278)
Q Consensus 87 -~~i~Gr~l~V~~A~~~~ 103 (278)
..|+|++|+|++++.+.
T Consensus 87 g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 87 GKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp TCEETTEECEEECSSCCC
T ss_pred CCccCCCEEEEEECCCCC
Confidence 67999999999997653
No 33
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=142.76 Aligned_cols=85 Identities=27% Similarity=0.410 Sum_probs=78.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhh-CCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Cc-cCCeeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQ-FGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PV-IDGRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~-~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~-i~Gr~l~ 95 (278)
+....++|||+|||+++++++|+++|++ ||.|++|+|+.|+ +++++|||||+|.+.++|++||+.++ .. |+|++|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999998 89999999999999999999999888 57 9999999
Q ss_pred EEEccCCCC
Q 023688 96 CNLASLGAH 104 (278)
Q Consensus 96 V~~A~~~~~ 104 (278)
|++++++..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976543
No 34
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.83 E-value=1.6e-20 Score=149.26 Aligned_cols=91 Identities=22% Similarity=0.341 Sum_probs=82.4
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCe
Q 023688 14 HPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGR 92 (278)
Q Consensus 14 ~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr 92 (278)
.+........++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+
T Consensus 13 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 13 EPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp -CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 3444566678899999999999999999999999999999999999899999999999999999999999888 679999
Q ss_pred eEEEEEccCCCC
Q 023688 93 RANCNLASLGAH 104 (278)
Q Consensus 93 ~l~V~~A~~~~~ 104 (278)
.|.|++|+++..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999986544
No 35
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=140.36 Aligned_cols=85 Identities=21% Similarity=0.441 Sum_probs=78.7
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeE
Q 023688 16 GDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRA 94 (278)
Q Consensus 16 ~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l 94 (278)
........++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 88 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVI 88 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 34455677899999999999999999999999999999999999999999999999999999999999888 57999999
Q ss_pred EEEEcc
Q 023688 95 NCNLAS 100 (278)
Q Consensus 95 ~V~~A~ 100 (278)
+|++|+
T Consensus 89 ~v~~ak 94 (94)
T 2e5h_A 89 KASIAI 94 (94)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999984
No 36
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=6e-20 Score=141.21 Aligned_cols=86 Identities=26% Similarity=0.317 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCC---ee
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG---RR 93 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G---r~ 93 (278)
..+...++|||+|||+++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|.+ +.
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~ 88 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSS 88 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCcc
Confidence 344568899999999999999999999999999999999998 79999999999999999999999888 56777 99
Q ss_pred EEEEEccCCCC
Q 023688 94 ANCNLASLGAH 104 (278)
Q Consensus 94 l~V~~A~~~~~ 104 (278)
|+|++|+.+..
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999986544
No 37
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=140.87 Aligned_cols=83 Identities=25% Similarity=0.496 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCC---CCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKN---TGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~---tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
...++|||+|||++++|++|+++|++||.|++|+|+.++. |++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4567999999999999999999999999999999999876 66999999999999999999999988 6799999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
++++.+.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9997654
No 38
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.83 E-value=3.6e-20 Score=136.21 Aligned_cols=79 Identities=33% Similarity=0.527 Sum_probs=75.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASLG 102 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~~ 102 (278)
++|||+|||+++++++|+++|++||.|.++.|+.++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|++++++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999999999999999999999999999999888 6799999999999764
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=3e-20 Score=137.83 Aligned_cols=82 Identities=35% Similarity=0.515 Sum_probs=75.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 356799999999999999999999999999999999999899999999999999999999999888 6799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 40
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-20 Score=142.74 Aligned_cols=89 Identities=22% Similarity=0.351 Sum_probs=81.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
+........++|||+|||+++++++|+++|++||.|++|.|+.|+.+++++|||||+|.+.++|++||+.++ ..|+|++
T Consensus 15 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 15 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp CCBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 334455667899999999999999999999999999999999999999999999999999999999999888 6799999
Q ss_pred EEEEEccCCC
Q 023688 94 ANCNLASLGA 103 (278)
Q Consensus 94 l~V~~A~~~~ 103 (278)
|+|++|+++.
T Consensus 95 l~V~~a~~~~ 104 (106)
T 1p27_B 95 ISVDWCFVRG 104 (106)
T ss_dssp CEEEESEESS
T ss_pred EEEEeecCCC
Confidence 9999998653
No 41
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=140.48 Aligned_cols=85 Identities=16% Similarity=0.396 Sum_probs=78.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
..+...++|||+|||+++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 90 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKV 90 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 455667899999999999999999999999999999999998 89999999999999999999999988 5799999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
++++++.
T Consensus 91 ~~a~~~~ 97 (100)
T 2do4_A 91 AISNSGP 97 (100)
T ss_dssp EECCCCS
T ss_pred EECCCCC
Confidence 9997643
No 42
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=139.75 Aligned_cols=86 Identities=22% Similarity=0.307 Sum_probs=77.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...+...++|||+|||+++++++|+++|++||.|++|+|+.|+. .++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cqi_A 9 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVK 86 (103)
T ss_dssp CCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEE
Confidence 44667789999999999999999999999999999999999864 368999999999999999999888 579999999
Q ss_pred EEEccCCCC
Q 023688 96 CNLASLGAH 104 (278)
Q Consensus 96 V~~A~~~~~ 104 (278)
|++++++..
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999986543
No 43
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=4.3e-20 Score=145.06 Aligned_cols=83 Identities=27% Similarity=0.406 Sum_probs=77.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
.++...++|||+|||+++++++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 455667899999999999999999999999999999999999999999999999999999999999988 6799999999
Q ss_pred EEcc
Q 023688 97 NLAS 100 (278)
Q Consensus 97 ~~A~ 100 (278)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9984
No 44
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=138.88 Aligned_cols=89 Identities=29% Similarity=0.519 Sum_probs=79.2
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
.....+...++|||+|||+++++++|+++|++||.|++|+|+.++. .++|||||+|.+.++|++||+.++ ..|+|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cq3_A 7 GNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRK 84 (103)
T ss_dssp CCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 3345667789999999999999999999999999999999999864 389999999999999999999888 6799999
Q ss_pred EEEEEccCCCCC
Q 023688 94 ANCNLASLGAHK 105 (278)
Q Consensus 94 l~V~~A~~~~~~ 105 (278)
|+|++++++..+
T Consensus 85 l~v~~a~~~~~~ 96 (103)
T 2cq3_A 85 IEVNNATARVMT 96 (103)
T ss_dssp CEEEECCSSCCC
T ss_pred EEEEEcccCCCC
Confidence 999999865443
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.82 E-value=3.8e-20 Score=136.69 Aligned_cols=81 Identities=33% Similarity=0.487 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
+...++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++|++.++ ..|+|++|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 4567899999999999999999999999999999999998899999999999999999999999888 679999999999
Q ss_pred cc
Q 023688 99 AS 100 (278)
Q Consensus 99 A~ 100 (278)
|+
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 84
No 46
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.82 E-value=4.1e-20 Score=145.23 Aligned_cols=81 Identities=30% Similarity=0.452 Sum_probs=73.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..++|||+|||++++|++|+++|++||.|++|+|++|+ +.+||||||+|.+.++|++||+.++ .+|+|++|+|++++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 35689999999999999999999999999999999986 5589999999999999999999988 67999999999997
Q ss_pred CCCC
Q 023688 101 LGAH 104 (278)
Q Consensus 101 ~~~~ 104 (278)
++..
T Consensus 82 ~~~~ 85 (115)
T 4f25_A 82 SRKE 85 (115)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 6543
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.82 E-value=8.1e-21 Score=142.62 Aligned_cols=80 Identities=18% Similarity=0.382 Sum_probs=71.2
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
.+|||+|||++++|++|+++|++|| .|.+|+|+.|+.+++++|||||+|.+.++|++||+.++ .+|+|++|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4799999999999999999999999 99999999999999999999999999999999999988 68999999999998
Q ss_pred CCC
Q 023688 101 LGA 103 (278)
Q Consensus 101 ~~~ 103 (278)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 653
No 48
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=5.8e-20 Score=142.59 Aligned_cols=89 Identities=26% Similarity=0.380 Sum_probs=81.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
+........++|||+|||+++++++|+++|++||.|++|.|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 334556677899999999999999999999999999999999999999999999999999999999999888 6799999
Q ss_pred EEEEEccCCC
Q 023688 94 ANCNLASLGA 103 (278)
Q Consensus 94 l~V~~A~~~~ 103 (278)
|+|++++++.
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999998654
No 49
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=138.17 Aligned_cols=84 Identities=23% Similarity=0.374 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE-EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee---
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEIL-EAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR--- 93 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~-~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~--- 93 (278)
.....++|||+|||++++|++|+++|++||.|+ +|+|++|+.+++++|||||+|.+.++|++||+.++ ..|+|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345678999999999999999999999999999 99999999999999999999999999999999998 5799999
Q ss_pred -EEEEEccCC
Q 023688 94 -ANCNLASLG 102 (278)
Q Consensus 94 -l~V~~A~~~ 102 (278)
|+|++|++.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999999754
No 50
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=3.9e-20 Score=162.64 Aligned_cols=81 Identities=17% Similarity=0.375 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
..++|||+||+++++|++|+++|++|| .|++|+|++|+.|+++||||||+|.+.++|++||+.|+ .+|+|++|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 99999999999999999999999999999999999999 689999999999
Q ss_pred ccCC
Q 023688 99 ASLG 102 (278)
Q Consensus 99 A~~~ 102 (278)
|+..
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 9643
No 51
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.9e-20 Score=144.00 Aligned_cols=85 Identities=35% Similarity=0.658 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 98 (278)
.+...++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.....|+|++|+|++
T Consensus 23 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~ 102 (116)
T 1x4b_A 23 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKR 102 (116)
T ss_dssp HHHHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEEC
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEE
Confidence 34456899999999999999999999999999999999999999999999999999999999999933679999999999
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
++++.
T Consensus 103 a~~~~ 107 (116)
T 1x4b_A 103 AVARE 107 (116)
T ss_dssp CSSCC
T ss_pred CCCCc
Confidence 98654
No 52
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-20 Score=148.92 Aligned_cols=85 Identities=20% Similarity=0.280 Sum_probs=78.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE--EEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-C----cc
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILE--AVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-P----VI 89 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~--v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~----~i 89 (278)
+..+...++|||+|||++++|++|+++|++||.|+. |+|++|+.|+++||||||+|.+. +|++||+.++ . .|
T Consensus 17 ~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~ 95 (131)
T 2m2b_A 17 PSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTI 95 (131)
T ss_dssp CCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCG
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccC
Confidence 445667889999999999999999999999999976 99999999999999999999999 9999999998 5 89
Q ss_pred CCeeEEEEEccCC
Q 023688 90 DGRRANCNLASLG 102 (278)
Q Consensus 90 ~Gr~l~V~~A~~~ 102 (278)
+|++|+|++++++
T Consensus 96 ~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 96 DGKTINVEFAKGS 108 (131)
T ss_dssp GGCCCCCEECCCS
T ss_pred CCEEEEEEECCCC
Confidence 9999999999764
No 53
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=139.35 Aligned_cols=85 Identities=21% Similarity=0.323 Sum_probs=76.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
.....+...++|||+|||++++|++|+++|++||.|++|+|+.+ ++++|||||+|++.++|++||+.++ .+|+|++
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 33456667889999999999999999999999999999999664 5689999999999999999999888 6799999
Q ss_pred EEEEEccCC
Q 023688 94 ANCNLASLG 102 (278)
Q Consensus 94 l~V~~A~~~ 102 (278)
|+|++++.+
T Consensus 91 l~V~~a~~~ 99 (109)
T 1x4a_A 91 LRVEFPRSG 99 (109)
T ss_dssp CEEECCCCC
T ss_pred EEEEEcccC
Confidence 999999754
No 54
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.81 E-value=8.5e-20 Score=137.72 Aligned_cols=84 Identities=26% Similarity=0.414 Sum_probs=76.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...+...++|||+|||+++++++|+++|++||.|++|+|+.++. ++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPIN 88 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEE
Confidence 34566788999999999999999999999999999999999986 9999999999999999999999888 679999999
Q ss_pred EEEccC
Q 023688 96 CNLASL 101 (278)
Q Consensus 96 V~~A~~ 101 (278)
|++++.
T Consensus 89 V~~a~~ 94 (95)
T 2ywk_A 89 VSGPSS 94 (95)
T ss_dssp EECCCC
T ss_pred EEEcCC
Confidence 999864
No 55
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=138.75 Aligned_cols=84 Identities=29% Similarity=0.415 Sum_probs=78.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-C
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-P 87 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~--------v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~ 87 (278)
.......++|||+|||+++++++|+++|++||.|++ |+|+.|+.+++++|||||+|.+.++|++||+.++ .
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345667789999999999999999999999999999 9999999999999999999999999999999888 6
Q ss_pred ccCCeeEEEEEcc
Q 023688 88 VIDGRRANCNLAS 100 (278)
Q Consensus 88 ~i~Gr~l~V~~A~ 100 (278)
.|+|++|+|++|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 7999999999984
No 56
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=5.9e-20 Score=139.53 Aligned_cols=84 Identities=20% Similarity=0.248 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
..+...++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 89 (98)
T 2cqp_A 10 SGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKL 89 (98)
T ss_dssp CCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 355667899999999999999999999999999999999998899999999999999999999999998 6799999999
Q ss_pred EEccC
Q 023688 97 NLASL 101 (278)
Q Consensus 97 ~~A~~ 101 (278)
++++.
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99864
No 57
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.81 E-value=9.5e-20 Score=138.10 Aligned_cols=81 Identities=23% Similarity=0.502 Sum_probs=76.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASL 101 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~ 101 (278)
.++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 5799999999999999999999999999999999999999999999999999999999999888 679999999999976
Q ss_pred CC
Q 023688 102 GA 103 (278)
Q Consensus 102 ~~ 103 (278)
+.
T Consensus 82 ~~ 83 (96)
T 2x1f_A 82 SD 83 (96)
T ss_dssp SS
T ss_pred CC
Confidence 53
No 58
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=5.8e-20 Score=147.65 Aligned_cols=86 Identities=26% Similarity=0.425 Sum_probs=79.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.......++|||+|||++++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ .+|+|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455677899999999999999999999999999999999999999999999999999999999999888 679999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|++++++
T Consensus 120 V~~a~~~ 126 (129)
T 2kxn_B 120 VDFSITK 126 (129)
T ss_dssp ESCCSSS
T ss_pred EEEecCC
Confidence 9999764
No 59
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.9e-19 Score=138.25 Aligned_cols=86 Identities=17% Similarity=0.339 Sum_probs=78.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEe-eCCCCCCcccEEEEEeCCHHHHHHHHhCCC---CccCCeeE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGE-ILEAVVI-TDKNTGRSKGYGFVTFKDPEAAMRACQNPS---PVIDGRRA 94 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~-I~~v~i~-~d~~tg~skG~aFV~F~~~e~A~~Al~~~~---~~i~Gr~l 94 (278)
....++|||+|||+++++++|+++|++||. |++|.|+ .++.+++++|||||+|.+.++|++||+.++ ..|+|++|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 345789999999999999999999999998 9999998 888889999999999999999999999985 46999999
Q ss_pred EEEEccCCCCC
Q 023688 95 NCNLASLGAHK 105 (278)
Q Consensus 95 ~V~~A~~~~~~ 105 (278)
+|++|+++...
T Consensus 85 ~V~~a~~~~~~ 95 (109)
T 2dis_A 85 AVDWAEPEIDV 95 (109)
T ss_dssp EEEESCSSCST
T ss_pred EEEEcCCCCCc
Confidence 99999876543
No 60
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=2.3e-19 Score=133.59 Aligned_cols=79 Identities=19% Similarity=0.427 Sum_probs=74.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..++|||+|||+++++++|+++|++||.|.+|+|+.++.+++++|||||+|.+.++|++|| .++ ..|+|++|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4679999999999999999999999999999999999989999999999999999999999 777 68999999999997
Q ss_pred C
Q 023688 101 L 101 (278)
Q Consensus 101 ~ 101 (278)
+
T Consensus 84 ~ 84 (89)
T 3ucg_A 84 T 84 (89)
T ss_dssp T
T ss_pred C
Confidence 5
No 61
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.80 E-value=3.4e-20 Score=142.16 Aligned_cols=83 Identities=18% Similarity=0.184 Sum_probs=77.4
Q ss_pred CCCCcEEEEcCCCC------CCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCC-
Q 023688 20 DTTFTKIFVGGLAW------ETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG- 91 (278)
Q Consensus 20 ~~~~~~lfVgnLp~------~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G- 91 (278)
+...++|||+|||. ++++++|+++|++||.|++|+|++|+.|+++||||||+|.+.++|++||+.++ ..|+|
T Consensus 3 ~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~ 82 (100)
T 3ns6_A 3 LGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLK 82 (100)
T ss_dssp SCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 34467999999999 99999999999999999999999999999999999999999999999999988 67999
Q ss_pred eeEEEEEccCC
Q 023688 92 RRANCNLASLG 102 (278)
Q Consensus 92 r~l~V~~A~~~ 102 (278)
+.|+|++|.++
T Consensus 83 r~l~V~~a~~~ 93 (100)
T 3ns6_A 83 HRLFLYTMKDV 93 (100)
T ss_dssp CBCEEEESHHH
T ss_pred eEEEEEECchh
Confidence 99999999753
No 62
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-20 Score=145.50 Aligned_cols=84 Identities=19% Similarity=0.311 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
++...++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++|| .++ ..|+|+.|+|+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 99 (114)
T 2cq4_A 21 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQ 99 (114)
T ss_dssp THHHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEE
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEE
Confidence 4455689999999999999999999999999999999999999999999999999999999999 777 67999999999
Q ss_pred EccCCC
Q 023688 98 LASLGA 103 (278)
Q Consensus 98 ~A~~~~ 103 (278)
+++++.
T Consensus 100 ~a~~~~ 105 (114)
T 2cq4_A 100 ASQAEK 105 (114)
T ss_dssp EHHHHH
T ss_pred ecCCCc
Confidence 998653
No 63
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=140.64 Aligned_cols=85 Identities=33% Similarity=0.563 Sum_probs=79.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
..+...++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 100 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKV 100 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 355667899999999999999999999999999999999999999999999999999999999999888 5799999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
++++++
T Consensus 101 ~~a~~k 106 (108)
T 2jrs_A 101 GHVTER 106 (108)
T ss_dssp ECSCSS
T ss_pred EEcccC
Confidence 999754
No 64
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=5.4e-20 Score=133.40 Aligned_cols=76 Identities=38% Similarity=0.760 Sum_probs=73.4
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEc
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLA 99 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A 99 (278)
++|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++.++..|+|++|+|++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTTCCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCCCccCCEEEEEEec
Confidence 4799999999999999999999999999999999998999999999999999999999999998899999999987
No 65
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=149.69 Aligned_cols=80 Identities=19% Similarity=0.413 Sum_probs=75.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCC--CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFG--EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
..++|||+||+++++|++|+++|++|| .|.+|+|+.|+.++++||||||+|.+.++|++||+.++ .+|+|++|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 457999999999999999999999999 99999999999999999999999999999999999998 689999999999
Q ss_pred ccC
Q 023688 99 ASL 101 (278)
Q Consensus 99 A~~ 101 (278)
|.+
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 964
No 66
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.6e-19 Score=136.67 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=75.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE-EEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILE-AVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~-v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 96 (278)
......++|||+|||++++|++|+++|++||.|.+ |+|+.| .+++++|||||+|.++++|++||+.....|+||.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i~v 88 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYIEI 88 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEEEE
Confidence 34566789999999999999999999999999998 888888 6899999999999999999999999437899999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
.++..+
T Consensus 89 ~~~~~~ 94 (104)
T 1wg5_A 89 FKSSRA 94 (104)
T ss_dssp EEECTT
T ss_pred EECCHH
Confidence 998643
No 67
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=134.41 Aligned_cols=81 Identities=25% Similarity=0.435 Sum_probs=75.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCC-cccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGR-SKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~-skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
..++|||+|||+++++++|+++|++||.|.+|+|+.++.++. ++|||||+|.+.++|++|++.++ ..|+|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 467999999999999999999999999999999999987766 89999999999999999999888 6799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
.+.
T Consensus 83 ~~~ 85 (88)
T 4a8x_A 83 LAP 85 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 754
No 68
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=6.5e-20 Score=140.63 Aligned_cols=86 Identities=27% Similarity=0.584 Sum_probs=79.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.+...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 45567899999999999999999999999999999999999899999999999999999999999888 57999999999
Q ss_pred EccCCCC
Q 023688 98 LASLGAH 104 (278)
Q Consensus 98 ~A~~~~~ 104 (278)
+++++..
T Consensus 84 ~a~~~~~ 90 (104)
T 1p1t_A 84 NAASEKN 90 (104)
T ss_dssp ETTCTTH
T ss_pred eCCCccc
Confidence 9986543
No 69
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-19 Score=135.64 Aligned_cols=78 Identities=17% Similarity=0.221 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCC-----e
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG-----R 92 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G-----r 92 (278)
.....++|||+|||++++|++|+++|++||+|++|+|+.| |||||+|.+.++|++||+.|+ .+|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~ 83 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETA 83 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcce
Confidence 4456789999999999999999999999999999999876 799999999999999999998 57999 9
Q ss_pred eEEEEEccCCC
Q 023688 93 RANCNLASLGA 103 (278)
Q Consensus 93 ~l~V~~A~~~~ 103 (278)
.|+|++|+++.
T Consensus 84 ~i~V~~a~~~~ 94 (108)
T 1x4c_A 84 YIRVKVDGPRS 94 (108)
T ss_dssp EEEEEESSCCS
T ss_pred EEEEEeCCCCC
Confidence 99999998643
No 70
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.79 E-value=3.3e-19 Score=137.47 Aligned_cols=83 Identities=28% Similarity=0.416 Sum_probs=77.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.......++|||+|||+++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 101 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMN 101 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 3455678899999999999999999999999999999999998 89999999999999999999999888 679999999
Q ss_pred EEEcc
Q 023688 96 CNLAS 100 (278)
Q Consensus 96 V~~A~ 100 (278)
|++|.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99985
No 71
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=3.7e-19 Score=146.50 Aligned_cols=86 Identities=31% Similarity=0.545 Sum_probs=79.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
......++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 344567899999999999999999999999999999999999899999999999999999999999988 5799999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
++|+++.
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9998653
No 72
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-20 Score=144.75 Aligned_cols=85 Identities=15% Similarity=0.251 Sum_probs=77.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCE-EEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEI-LEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I-~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 96 (278)
..+...++|||+|||++++|++|+++|++||.| .+|+|+.|+ +++++|||||+|.+.++|++||+.....|+|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~v 88 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGREAFV 88 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTEEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCeEEEE
Confidence 345667899999999999999999999999999 899999998 899999999999999999999998336799999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
.++..+.
T Consensus 89 ~~a~~~~ 95 (114)
T 2cpy_A 89 HVVTLED 95 (114)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 9997653
No 73
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.4e-19 Score=137.37 Aligned_cols=83 Identities=19% Similarity=0.293 Sum_probs=74.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANC 96 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 96 (278)
.......++|||+|||++++|++|+++|++||. ++|+|++|+ ++++||||||+|+++++|++||+....+|++|.|+|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 86 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVEL 86 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEE
Confidence 345567789999999999999999999999995 599999998 899999999999999999999965337899999999
Q ss_pred EEccC
Q 023688 97 NLASL 101 (278)
Q Consensus 97 ~~A~~ 101 (278)
.++..
T Consensus 87 ~~~~~ 91 (102)
T 1wez_A 87 FLNST 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99864
No 74
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=5e-19 Score=140.11 Aligned_cols=80 Identities=20% Similarity=0.407 Sum_probs=75.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++|| .++ ..|+|++|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4689999999999999999999999999999999999989999999999999999999999 677 67999999999997
Q ss_pred CC
Q 023688 101 LG 102 (278)
Q Consensus 101 ~~ 102 (278)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 75
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.1e-19 Score=140.22 Aligned_cols=87 Identities=25% Similarity=0.372 Sum_probs=77.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHH---HHHhhCCCEEEEEEeeCCCCC---CcccEEEEEeCCHHHHHHHHhCCC-Ccc
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMR---RYFEQFGEILEAVVITDKNTG---RSKGYGFVTFKDPEAAMRACQNPS-PVI 89 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~---~~F~~~G~I~~v~i~~d~~tg---~skG~aFV~F~~~e~A~~Al~~~~-~~i 89 (278)
.......++|||+|||++++|++|+ ++|++||+|++|+|++++.++ +++|||||+|++.++|++||+.|+ .+|
T Consensus 9 ~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 9 SVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 4456677899999999999999999 999999999999999988754 456999999999999999999988 579
Q ss_pred CCeeEEEEEccCCC
Q 023688 90 DGRRANCNLASLGA 103 (278)
Q Consensus 90 ~Gr~l~V~~A~~~~ 103 (278)
+|++|+|++|+++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999997653
No 76
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=3.2e-19 Score=137.97 Aligned_cols=81 Identities=17% Similarity=0.254 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.+...++|||+|||+++++++|+++|++||.|.+|.|++|+. ++++|||||+|.+.++|++||+ ++ ..|+|+.|.|+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 456678999999999999999999999999999999999987 9999999999999999999999 55 78999999999
Q ss_pred EccC
Q 023688 98 LASL 101 (278)
Q Consensus 98 ~A~~ 101 (278)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9864
No 77
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=139.43 Aligned_cols=81 Identities=16% Similarity=0.241 Sum_probs=72.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC---CccCCeeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS---PVIDGRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~---~~i~Gr~l~ 95 (278)
.+...++|||+|||++++|++|+++|++||+|++|+|+++ ||||||+|++.++|++|++.++ .+|+|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4566789999999999999999999999999999999875 6899999999999999999664 469999999
Q ss_pred EEEccCCCCC
Q 023688 96 CNLASLGAHK 105 (278)
Q Consensus 96 V~~A~~~~~~ 105 (278)
|++|+.+..+
T Consensus 86 V~~A~~~~~~ 95 (105)
T 1sjq_A 86 IQFSNHKELK 95 (105)
T ss_dssp BCCCSSSSCC
T ss_pred EEEcCCCCCC
Confidence 9999865443
No 78
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.79 E-value=2e-19 Score=145.56 Aligned_cols=86 Identities=31% Similarity=0.534 Sum_probs=79.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
..+...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V 121 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 121 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 345567899999999999999999999999999999999999899999999999999999999999988 6799999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
++++++.
T Consensus 122 ~~a~~~~ 128 (135)
T 2lea_A 122 QMARYGR 128 (135)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 9998653
No 79
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.5e-19 Score=131.41 Aligned_cols=81 Identities=17% Similarity=0.338 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.+...++|||+|||+++++++|+++|++| .|.+|+|+++ .+++++|||||+|.+.++|++||+ ++ ..|+|+.|+|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 45567899999999999999999999999 9999999999 689999999999999999999999 88 57999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
+++.+
T Consensus 83 ~a~~~ 87 (91)
T 2dgw_A 83 REKSG 87 (91)
T ss_dssp EESSC
T ss_pred ECCcC
Confidence 99754
No 80
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.2e-19 Score=134.70 Aligned_cols=81 Identities=25% Similarity=0.370 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
..+...++|||+|||+++++++|+++|++||.| +|+.+ .+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 85 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRL 85 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEE
Confidence 456678999999999999999999999999977 56666 579999999999999999999999888 5799999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
++++++
T Consensus 86 ~~a~~~ 91 (101)
T 2fc9_A 86 ELQGPR 91 (101)
T ss_dssp EECSSC
T ss_pred EEcCCC
Confidence 999765
No 81
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=1.1e-18 Score=133.93 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=71.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|||+|||+++++++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.++ ..|+|+.|+|+
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIV 78 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEE
Confidence 44567899999999999999999999999999999887 3499999999999999999888 57999999999
Q ss_pred EccCCCCCC
Q 023688 98 LASLGAHKT 106 (278)
Q Consensus 98 ~A~~~~~~~ 106 (278)
+++++..+.
T Consensus 79 ~a~~~~~~~ 87 (103)
T 2dgu_A 79 FAKPPDQKR 87 (103)
T ss_dssp ECCCCCCCC
T ss_pred EcCCCcccc
Confidence 998765443
No 82
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=1.3e-18 Score=138.03 Aligned_cols=84 Identities=26% Similarity=0.392 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|||+|||+++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667899999999999999999999999999999999998 89999999999999999999999888 57999999999
Q ss_pred EccCCC
Q 023688 98 LASLGA 103 (278)
Q Consensus 98 ~A~~~~ 103 (278)
+|....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997654
No 83
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.79 E-value=5.9e-19 Score=132.29 Aligned_cols=82 Identities=28% Similarity=0.517 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.+...++|||+|||+++++++|+++|++||.|++|+|+++ +++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 81 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVR 81 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999985 68999999999999999999999888 67999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
++++.
T Consensus 82 ~a~~~ 86 (92)
T 2dgv_A 82 IDRNA 86 (92)
T ss_dssp ECSCC
T ss_pred EcCCC
Confidence 99754
No 84
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.4e-19 Score=134.27 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...++|||+|||+++++++|+ ++|++||.|++|+|+.|+.+ +|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 356799999999999999999 99999999999999999865 8899999999999999999988 579999999
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|++|++..
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99997543
No 85
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=9.1e-19 Score=140.90 Aligned_cols=83 Identities=33% Similarity=0.463 Sum_probs=77.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...+...++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 4456678899999999999999999999999999999999999999999999999999999999999988 579999999
Q ss_pred EEEc
Q 023688 96 CNLA 99 (278)
Q Consensus 96 V~~A 99 (278)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9986
No 86
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=2.2e-19 Score=129.78 Aligned_cols=74 Identities=39% Similarity=0.790 Sum_probs=70.3
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 25 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
+|||+|||+++++++|+++|++||.|.+|.|+.++.+++++|||||+|.+.++|++|++ ++ ..|+|++|+|++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 59999999999999999999999999999999999899999999999999999999998 55 7899999999976
No 87
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.4e-19 Score=130.62 Aligned_cols=75 Identities=31% Similarity=0.575 Sum_probs=71.6
Q ss_pred EEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEc
Q 023688 25 KIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLA 99 (278)
Q Consensus 25 ~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A 99 (278)
+|||+|||+++++++|+++|++||.|.+|.|++++.+++++|||||+|.+.++|++||+..+..|+|++|+|++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEC
Confidence 599999999999999999999999999999999999999999999999999999999998667899999999986
No 88
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.2e-19 Score=135.06 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=72.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC---CccCCee
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS---PVIDGRR 93 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~---~~i~Gr~ 93 (278)
.......++|||+|||++++|++|+++|++||.|++|.|+++ ||||||+|++.++|++|++.++ .+|+|++
T Consensus 9 ~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 82 (101)
T 2cq1_A 9 KMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQP 82 (101)
T ss_dssp CCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcE
Confidence 345567789999999999999999999999999999988864 7899999999999999999764 4699999
Q ss_pred EEEEEccCCCCC
Q 023688 94 ANCNLASLGAHK 105 (278)
Q Consensus 94 l~V~~A~~~~~~ 105 (278)
|.|.+|+.+..+
T Consensus 83 l~V~~a~~~~~~ 94 (101)
T 2cq1_A 83 IYIQYSNHKELK 94 (101)
T ss_dssp CEEEECSCSSCC
T ss_pred EEEEEcCcccCc
Confidence 999999865443
No 89
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.1e-19 Score=136.99 Aligned_cols=82 Identities=20% Similarity=0.249 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
....++|||+|||+++++++|+++|++||.|++++++.++.+++++|||||+|.++++|++||+.++ ..|+|++|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 3456899999999999999999999999999999999999899999999999999999999999888 679999999999
Q ss_pred ccC
Q 023688 99 ASL 101 (278)
Q Consensus 99 A~~ 101 (278)
++.
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 863
No 90
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=8.5e-19 Score=134.02 Aligned_cols=83 Identities=31% Similarity=0.506 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...+...++|||+|||+++++++|+++|+.| .+|+++.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~---~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTC---SEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCC---eEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3456677899999999999999999999977 377888898899999999999999999999999888 679999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|++++++
T Consensus 86 V~~a~~~ 92 (102)
T 2fc8_A 86 LDWAKPK 92 (102)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999754
No 91
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=7.8e-19 Score=146.26 Aligned_cols=89 Identities=25% Similarity=0.335 Sum_probs=79.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.......++|||+|||+++++++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|.
T Consensus 66 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 145 (165)
T 1rk8_A 66 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 145 (165)
T ss_dssp CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3345567899999999999999999999999999999999999999999999999999999999999988 579999999
Q ss_pred EEEccCCCCC
Q 023688 96 CNLASLGAHK 105 (278)
Q Consensus 96 V~~A~~~~~~ 105 (278)
|.|+..+..+
T Consensus 146 V~~a~~~~~~ 155 (165)
T 1rk8_A 146 VDWCFVKGPK 155 (165)
T ss_dssp EEESEECC--
T ss_pred EEEecCCCCC
Confidence 9999876543
No 92
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.6e-20 Score=135.06 Aligned_cols=80 Identities=28% Similarity=0.470 Sum_probs=73.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 456899999999999999999999999999999999999999999999999999999999999888 5789988877655
Q ss_pred c
Q 023688 100 S 100 (278)
Q Consensus 100 ~ 100 (278)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 3
No 93
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.78 E-value=1.1e-19 Score=135.86 Aligned_cols=79 Identities=25% Similarity=0.514 Sum_probs=72.7
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASLG 102 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~~ 102 (278)
++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.+ |++|++.++ ..|+|++|+|++|.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 999999998 5799999999999765
Q ss_pred C
Q 023688 103 A 103 (278)
Q Consensus 103 ~ 103 (278)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 94
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-19 Score=137.75 Aligned_cols=83 Identities=19% Similarity=0.450 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCC-CCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDK-NTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~-~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
......++|||+|||+++++++|+++|++|| |++|+|++++ .+++++|||||+|.+.++|++|| .++ ..|+|++|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 4556778999999999999999999999999 9999999998 68999999999999999999999 677 679999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|++++++
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9999754
No 95
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=7.2e-19 Score=135.99 Aligned_cols=80 Identities=15% Similarity=0.189 Sum_probs=71.2
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC---CccCCee
Q 023688 18 YNDTTFTKIFVGGLAW-ETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS---PVIDGRR 93 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~---~~i~Gr~ 93 (278)
......++|||+|||+ +++|++|+++|++||.|++|.|+++ ||||||+|++.++|++||+.++ .+|+|++
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~ 83 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKP 83 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcE
Confidence 3445678999999999 9999999999999999999999875 4799999999999999999877 2599999
Q ss_pred EEEEEccCCC
Q 023688 94 ANCNLASLGA 103 (278)
Q Consensus 94 l~V~~A~~~~ 103 (278)
|.|.+|+...
T Consensus 84 l~V~~a~~~~ 93 (102)
T 1x4d_A 84 VRVHLSQKYK 93 (102)
T ss_dssp CEEEEECCCT
T ss_pred EEEEECCCCC
Confidence 9999997543
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=133.16 Aligned_cols=79 Identities=19% Similarity=0.240 Sum_probs=70.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC---CccCCeeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS---PVIDGRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~---~~i~Gr~l~ 95 (278)
.....++|||+|||++++|++|+++|++||.|++|.|+++ ||||||+|++.++|++|++.++ ..|+|++|+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~ 84 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAF 84 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4456789999999999999999999999999999998764 6899999999999999999875 259999999
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|.+++.+.
T Consensus 85 V~~a~~~~ 92 (104)
T 1wex_A 85 FNYSTSKR 92 (104)
T ss_dssp EEECSSSS
T ss_pred EEEccCcc
Confidence 99997654
No 97
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.77 E-value=3.2e-18 Score=163.68 Aligned_cols=87 Identities=25% Similarity=0.526 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|||+||+++|++++|+++|++||.|+.|.|+.++.+++++|||||+|.+.++|++||+.|+ .+|+|+.|.|.
T Consensus 98 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~ 177 (437)
T 3pgw_S 98 QGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVD 177 (437)
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999999 67999999999
Q ss_pred EccCCCCC
Q 023688 98 LASLGAHK 105 (278)
Q Consensus 98 ~A~~~~~~ 105 (278)
++.....+
T Consensus 178 ~a~~~~~~ 185 (437)
T 3pgw_S 178 VERGRTVK 185 (437)
T ss_pred EeCCCCCC
Confidence 99865443
No 98
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=2.8e-18 Score=128.46 Aligned_cols=77 Identities=32% Similarity=0.554 Sum_probs=70.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.+...++|||+|||+++++++|+++|++||.|++|+|+ ++||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 45667899999999999999999999999999999987 5799999999999999999888 57999999999
Q ss_pred EccCCC
Q 023688 98 LASLGA 103 (278)
Q Consensus 98 ~A~~~~ 103 (278)
+++++.
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 997653
No 99
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.8e-19 Score=136.30 Aligned_cols=84 Identities=31% Similarity=0.554 Sum_probs=76.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...+...++|||+|||+++++++|+++|++||.|++|+|+.|+ ++++|||||+|.+.++|++|++.++ ..|+|++|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3456678899999999999999999999999999999999985 4589999999999999999999888 679999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|++++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999754
No 100
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.76 E-value=1.1e-18 Score=137.90 Aligned_cols=83 Identities=13% Similarity=0.209 Sum_probs=75.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC---EEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
......++|||+|||++++|++|+++|++||. |++|+|++|+. ++++|||||+|.+.++|++||+ ++ ..|+|+.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 34556789999999999999999999999999 89999999987 9999999999999999999999 66 6799999
Q ss_pred EEEEEccCC
Q 023688 94 ANCNLASLG 102 (278)
Q Consensus 94 l~V~~A~~~ 102 (278)
|+|.++..+
T Consensus 90 i~V~~a~~~ 98 (118)
T 2db1_A 90 IEVFKSHRT 98 (118)
T ss_dssp EEEEEECHH
T ss_pred EEEEECCHH
Confidence 999998643
No 101
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.3e-18 Score=134.30 Aligned_cols=83 Identities=16% Similarity=0.396 Sum_probs=75.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc-------
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI------- 89 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i------- 89 (278)
..+...++|||+|||+++++++|+++|++||.|++|+|+.++ +++++|||||+|.+.++|++||+.++ ..|
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 455677899999999999999999999999999999999998 89999999999999999999999888 456
Q ss_pred -CCeeEEEEEccC
Q 023688 90 -DGRRANCNLASL 101 (278)
Q Consensus 90 -~Gr~l~V~~A~~ 101 (278)
.++.|.|++|++
T Consensus 99 ~~~~~l~v~~a~p 111 (114)
T 1x5o_A 99 APTEPLLCKFSGP 111 (114)
T ss_dssp CCSSCBEEEECCC
T ss_pred CCCCceeEEccCC
Confidence 578899999974
No 102
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=3.7e-20 Score=145.26 Aligned_cols=84 Identities=29% Similarity=0.422 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEE--------EEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILE--------AVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI 89 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~--------v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i 89 (278)
++.+.++|||+|||+++++++|+++|++||.|.+ |+|+.|+.+++++|||||+|.+.++|++||+.++ ..|
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4566789999999999999999999999999999 9999998899999999999999999999999988 679
Q ss_pred CCeeEEEEEccCC
Q 023688 90 DGRRANCNLASLG 102 (278)
Q Consensus 90 ~Gr~l~V~~A~~~ 102 (278)
+|++|+|++++++
T Consensus 83 ~g~~l~V~~a~~~ 95 (116)
T 2lcw_A 83 SGNPIKVSFATRR 95 (116)
Confidence 9999999999754
No 103
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=4.2e-18 Score=125.72 Aligned_cols=78 Identities=31% Similarity=0.511 Sum_probs=71.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC-C-CccCCeeE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP-S-PVIDGRRA 94 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~-~-~~i~Gr~l 94 (278)
...+...++|||+|||+++++++|+++|++||.|++|+++++ +|||||+|.+.++|++|++.+ + ..|+|++|
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l 79 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRL 79 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEEC
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEE
Confidence 345677889999999999999999999999999999999863 789999999999999999988 6 57999999
Q ss_pred EEEEcc
Q 023688 95 NCNLAS 100 (278)
Q Consensus 95 ~V~~A~ 100 (278)
+|++|+
T Consensus 80 ~v~~ak 85 (85)
T 2ytc_A 80 NVKWGR 85 (85)
T ss_dssp CEEECC
T ss_pred EEEecC
Confidence 999984
No 104
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=2.6e-18 Score=130.86 Aligned_cols=82 Identities=26% Similarity=0.447 Sum_probs=73.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 15 PGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 15 ~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
.........++|||+|||+++++++|+++|++||.|++|+|+++ +|||||+|.+.++|++||+.++ ..|+|++
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~ 80 (99)
T 2cpj_A 7 GGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80 (99)
T ss_dssp CCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCce
Confidence 34455667789999999999999999999999999999999854 6899999999999999999988 6799999
Q ss_pred EEEEEccCC
Q 023688 94 ANCNLASLG 102 (278)
Q Consensus 94 l~V~~A~~~ 102 (278)
|+|++++++
T Consensus 81 l~v~~a~~~ 89 (99)
T 2cpj_A 81 LRVRFACHS 89 (99)
T ss_dssp CEEEESSCC
T ss_pred EEEEEcCCC
Confidence 999999764
No 105
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.76 E-value=2.9e-19 Score=145.67 Aligned_cols=82 Identities=20% Similarity=0.265 Sum_probs=71.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
......++|||+|||++++|++|+++|++|| |++|+|++|+. +++||||||+|++.++|++|| .++ .+|+||.|+|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3445678999999999999999999999999 77999999986 999999999999999999999 556 6899999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
.++...
T Consensus 118 ~~a~~~ 123 (139)
T 2hgn_A 118 FLNSTT 123 (139)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 998653
No 106
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.76 E-value=1.4e-18 Score=141.01 Aligned_cols=82 Identities=13% Similarity=0.193 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC---EEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
....+.++|||+|||++++|++|+++|++||. |++|+|++|+. ++++|||||+|++.++|++||+ ++ .+|+||.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~ 116 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRY 116 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEE
Confidence 34566789999999999999999999999999 89999999987 9999999999999999999999 77 6799999
Q ss_pred EEEEEccC
Q 023688 94 ANCNLASL 101 (278)
Q Consensus 94 l~V~~A~~ 101 (278)
|+|.++..
T Consensus 117 i~V~~a~~ 124 (136)
T 2hgl_A 117 IEVFKSHR 124 (136)
T ss_dssp EEEEECCH
T ss_pred EEEEECCh
Confidence 99999864
No 107
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.5e-18 Score=132.50 Aligned_cols=80 Identities=29% Similarity=0.528 Sum_probs=72.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.+...++|||+|||+++++++|+++|++||.|++|+|+.+ +|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 4556789999999999999999999999999999999876 7899999999999999999888 67999999999
Q ss_pred EccCCCC
Q 023688 98 LASLGAH 104 (278)
Q Consensus 98 ~A~~~~~ 104 (278)
+++++..
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9986543
No 108
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=8.5e-19 Score=136.86 Aligned_cols=86 Identities=17% Similarity=0.212 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|||+|||+++++++|+++|++||.|.++.+..+..+++++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34467899999999999999999999999999544333332368899999999999999999999988 67999999999
Q ss_pred EccCCCC
Q 023688 98 LASLGAH 104 (278)
Q Consensus 98 ~A~~~~~ 104 (278)
+|+++..
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9986543
No 109
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.6e-18 Score=139.06 Aligned_cols=81 Identities=21% Similarity=0.313 Sum_probs=73.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEE--EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEIL--EAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANC 96 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~--~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 96 (278)
.....++|||+|||++++|++|+++|++| .|+ +|+|++|+. |+++|||||+|.++++|++||+.++.+|+||.|+|
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I~V 115 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYIEV 115 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEEEE
Confidence 44567899999999999999999999999 677 899999987 99999999999999999999998768899999999
Q ss_pred EEccC
Q 023688 97 NLASL 101 (278)
Q Consensus 97 ~~A~~ 101 (278)
.++..
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98853
No 110
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.75 E-value=2.5e-18 Score=132.74 Aligned_cols=82 Identities=23% Similarity=0.374 Sum_probs=74.0
Q ss_pred CCCCCcEEEEcCCCCCC------CHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCC
Q 023688 19 NDTTFTKIFVGGLAWET------QRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG 91 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~------tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G 91 (278)
.+...++|||+|||+++ ++++|+++|++||.|++|.|+ +.+++++|||||+|.+.++|++||+.++ ..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g 88 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK 88 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 44557899999999999 789999999999999999988 3579999999999999999999999998 57999
Q ss_pred e-eEEEEEccCC
Q 023688 92 R-RANCNLASLG 102 (278)
Q Consensus 92 r-~l~V~~A~~~ 102 (278)
+ +|+|+++...
T Consensus 89 ~~~l~V~~a~~~ 100 (105)
T 2nlw_A 89 QHTFRVNLFTDF 100 (105)
T ss_dssp TCEEEEECSCCC
T ss_pred CceEEEEEcchH
Confidence 8 9999999643
No 111
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=2e-18 Score=131.80 Aligned_cols=75 Identities=27% Similarity=0.485 Sum_probs=70.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASLG 102 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~~ 102 (278)
++|||+|||+++++++|+++|++||+|++|+|+.+ ++|||||+|.+.++|++|++.++ ..|+|++|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999987 68999999999999999999888 6899999999999865
Q ss_pred C
Q 023688 103 A 103 (278)
Q Consensus 103 ~ 103 (278)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 112
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.7e-19 Score=139.50 Aligned_cols=83 Identities=16% Similarity=0.299 Sum_probs=75.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|||+|||++++|++|+++|++||.|.++.++.+..+++++|||||+|.+.++|++||+ ++ ..|+|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 44566899999999999999999999999999987777777789999999999999999999999 77 67999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 99753
No 113
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=136.06 Aligned_cols=81 Identities=16% Similarity=0.236 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC---CccCCeeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS---PVIDGRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~---~~i~Gr~l~ 95 (278)
.....++|||+|||++++|++|+++|++||.|++|+|+++ ||||||+|++.++|++|++.++ .+|+|++|+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEE
Confidence 4455789999999999999999999999999999999875 7899999999999999999876 369999999
Q ss_pred EEEccCCCCC
Q 023688 96 CNLASLGAHK 105 (278)
Q Consensus 96 V~~A~~~~~~ 105 (278)
|.+|+.+..+
T Consensus 101 V~~a~~k~~~ 110 (119)
T 2ad9_A 101 IQFSNHKELK 110 (119)
T ss_dssp EEECSSSSCC
T ss_pred EEEccCCCCC
Confidence 9999865544
No 114
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.75 E-value=2.8e-19 Score=136.64 Aligned_cols=82 Identities=17% Similarity=0.265 Sum_probs=74.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.....++|||+|||+++++++|+++|++||.|.+ .++.++.+++++|||||+|.+.++|++||+ ++ ..|+|++|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999988 677777789999999999999999999999 88 67999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
+++++
T Consensus 91 ~a~~~ 95 (101)
T 1fj7_A 91 KPKGR 95 (101)
T ss_dssp CCSCC
T ss_pred EcCCC
Confidence 99754
No 115
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=7.8e-18 Score=127.10 Aligned_cols=78 Identities=21% Similarity=0.387 Sum_probs=69.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
....++|||+|||++++|++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++||+ ++ ..|+|+.|+|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456799999999999999999999999999987 66666665 99999999999999999 88 679999999998
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
+..+.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86543
No 116
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.8e-18 Score=132.31 Aligned_cols=84 Identities=27% Similarity=0.527 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNL 98 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~ 98 (278)
.+...++|||+|||+++++++|+++|++||.|++|+|+.|+ +++++|||||+|.+.++|++||+ ....|+|++|.|.+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 5 GKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLKLGP 82 (102)
T ss_dssp CEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEEEEE
Confidence 44567899999999999999999999999999999999998 89999999999999999999999 44689999999999
Q ss_pred ccCCCC
Q 023688 99 ASLGAH 104 (278)
Q Consensus 99 A~~~~~ 104 (278)
+..+..
T Consensus 83 a~~~~~ 88 (102)
T 2xs2_A 83 AIRKQN 88 (102)
T ss_dssp EEECC-
T ss_pred CCcCcc
Confidence 976543
No 117
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=133.77 Aligned_cols=80 Identities=19% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEc
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLA 99 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A 99 (278)
....++|||+|||++++|++|+++|+.| .|++|+|++|+. ++++|||||+|.++++|++||+....+|+||.|+|..+
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 3446799999999999999999999999 899999999986 99999999999999999999954336899999999988
Q ss_pred cC
Q 023688 100 SL 101 (278)
Q Consensus 100 ~~ 101 (278)
..
T Consensus 91 ~~ 92 (109)
T 2dnn_A 91 TE 92 (109)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 118
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=128.11 Aligned_cols=78 Identities=24% Similarity=0.475 Sum_probs=70.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccC--CeeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVID--GRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~--Gr~l~ 95 (278)
.....++|||+|||++++|++|+++|++||.|++|+|+.+ +|||||+|.+.++|++||+.++ ..|+ |++|+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~ 86 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLR 86 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEE
Confidence 4456689999999999999999999999999999998754 6899999999999999999888 6788 99999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|++++++
T Consensus 87 V~~a~~~ 93 (97)
T 1why_A 87 VDFAKSG 93 (97)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 9999754
No 119
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.9e-18 Score=126.16 Aligned_cols=77 Identities=25% Similarity=0.480 Sum_probs=70.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
..+...++|||+|||+++++++|+++|++||.|++|+|+++ ||||+|++.++|++||+.++ ..|+|++|+|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 76 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGLDNTEFQGKRMHV 76 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS--------EEEEEESCHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 35667789999999999999999999999999999998743 99999999999999999988 5799999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
++++++
T Consensus 77 ~~a~~~ 82 (92)
T 2dgt_A 77 QLSTSR 82 (92)
T ss_dssp EESSCC
T ss_pred EEccCC
Confidence 999754
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=129.40 Aligned_cols=81 Identities=15% Similarity=0.241 Sum_probs=71.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.......++|||+|||+++++++|+++|++||.|. ++++.+ +++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 13 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 87 (97)
T 2e5j_A 13 GEGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLR 87 (97)
T ss_dssp CSSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34555678999999999999999999999999997 677653 678999999999999999999988 679999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|++++++
T Consensus 88 V~~a~~~ 94 (97)
T 2e5j_A 88 VALARQQ 94 (97)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999764
No 121
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.3e-17 Score=126.85 Aligned_cols=79 Identities=23% Similarity=0.395 Sum_probs=70.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhC--CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQF--GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~--G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
.......++|||+|||+++++++|+++|++| |.|.+|+++ +|||||+|.+.++|++||+.++ ..|+|++
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSP 80 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEE
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 3445567899999999999999999999999 999998764 5699999999999999999888 5799999
Q ss_pred EEEEEccCCC
Q 023688 94 ANCNLASLGA 103 (278)
Q Consensus 94 l~V~~A~~~~ 103 (278)
|+|++++++.
T Consensus 81 l~v~~a~~~~ 90 (99)
T 2cpd_A 81 IEVTLAKPVD 90 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCC
Confidence 9999997653
No 122
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.74 E-value=7.7e-18 Score=141.85 Aligned_cols=86 Identities=30% Similarity=0.574 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEc
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLA 99 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A 99 (278)
....++|||+|||+++++++|+++|++||.|++|+|+.|+.+++++|||||+|.+.++|++||+.+...|+|+.|+|++|
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~~~~~~~G~~i~v~~a 180 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYHTVNGHNCEVRKA 180 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHCSCCEETTEECEEEEC
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHhCCcEECCEEEEEEec
Confidence 34568999999999999999999999999999999999998999999999999999999999998667899999999999
Q ss_pred cCCCCC
Q 023688 100 SLGAHK 105 (278)
Q Consensus 100 ~~~~~~ 105 (278)
.++...
T Consensus 181 ~~k~~~ 186 (196)
T 1l3k_A 181 LSKQEM 186 (196)
T ss_dssp C-----
T ss_pred CChhHh
Confidence 876543
No 123
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=134.18 Aligned_cols=83 Identities=11% Similarity=0.193 Sum_probs=75.8
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC---EEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGE---ILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
......++|||+|||+++++++|+++|+.||. |.+|+|++|+. ++++|||||+|.+.++|++||+ ++ ..|+|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 34567789999999999999999999999998 89999999987 9999999999999999999999 66 6799999
Q ss_pred EEEEEccCC
Q 023688 94 ANCNLASLG 102 (278)
Q Consensus 94 l~V~~A~~~ 102 (278)
|+|.++.++
T Consensus 84 i~V~~a~~~ 92 (107)
T 2lmi_A 84 VEVYEINNE 92 (107)
T ss_dssp CCCEECCHH
T ss_pred EEEEECCHH
Confidence 999998753
No 124
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=125.21 Aligned_cols=76 Identities=29% Similarity=0.494 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.+...++|||+|||+++++++|+++|++||.|++|+|+++ ||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--------~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 76 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD--------YAFVHMEKEADAKAAIAQLNGKEVKGKRINVE 76 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS--------CEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC--------EEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 4566789999999999999999999999999999999743 99999999999999999888 67999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
++++.
T Consensus 77 ~a~~~ 81 (90)
T 2dnp_A 77 LSTKG 81 (90)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99765
No 125
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.74 E-value=9e-18 Score=129.28 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=70.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-C--ccCCeeE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-P--VIDGRRA 94 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~--~i~Gr~l 94 (278)
....+.++|||+|||++++|++|+++|++||.|++|+|++ .||||||+|++.++|++|++.++ . .|+|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~------~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP------KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc------CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 3455678999999999999999999999999999999985 36899999999999999999987 3 3899999
Q ss_pred EEEEccCC
Q 023688 95 NCNLASLG 102 (278)
Q Consensus 95 ~V~~A~~~ 102 (278)
.|.+++.+
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999754
No 126
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=3.5e-18 Score=134.07 Aligned_cols=79 Identities=14% Similarity=0.066 Sum_probs=70.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
....++|||+|||+++++++|+++|++|| +|..++|+. .+++|||||+|.+.++|++||+.++ .+|+|++|+|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~ 100 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVE 100 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567999999999999999999999999 999998864 3478999999999999999999998 57999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
+++..
T Consensus 101 ~a~~~ 105 (111)
T 2jvr_A 101 RDDNP 105 (111)
T ss_dssp ESCC-
T ss_pred ECCCC
Confidence 99643
No 127
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.73 E-value=1.4e-17 Score=140.29 Aligned_cols=85 Identities=35% Similarity=0.603 Sum_probs=78.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCN 97 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 97 (278)
.++...++|||+|||++++|++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+..+..|+|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRVVEPK 87 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEEeeee
Confidence 45667889999999999999999999999999999999999999999999999999999999999996678999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
++...
T Consensus 88 ~~~~~ 92 (196)
T 1l3k_A 88 RAVSR 92 (196)
T ss_dssp ECCC-
T ss_pred cccCc
Confidence 98754
No 128
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=5.8e-18 Score=131.69 Aligned_cols=80 Identities=21% Similarity=0.426 Sum_probs=70.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
...+...++|||+|||+++++++|+++|++||.|++|+|+ +|||||+|.+.++|++|++.++ ..|+|++|+
T Consensus 25 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 25 QEGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp ---CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 3456778999999999999999999999999999999987 6899999999999999999988 679999999
Q ss_pred EEEccCCCC
Q 023688 96 CNLASLGAH 104 (278)
Q Consensus 96 V~~A~~~~~ 104 (278)
|++++++..
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999986543
No 129
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.73 E-value=3.8e-18 Score=125.35 Aligned_cols=72 Identities=22% Similarity=0.423 Sum_probs=65.9
Q ss_pred CcEEEEcCCCCCC------CHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCe-eE
Q 023688 23 FTKIFVGGLAWET------QRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGR-RA 94 (278)
Q Consensus 23 ~~~lfVgnLp~~~------tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr-~l 94 (278)
.++|||+|||+++ ++++|+++|++||.|++|+|+ +.+++++|||||+|.+.++|++||+.++ ..|+|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 779999999999999999987 3579999999999999999999999999 579999 88
Q ss_pred EE
Q 023688 95 NC 96 (278)
Q Consensus 95 ~V 96 (278)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 130
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.73 E-value=9.1e-18 Score=144.90 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=75.8
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
....++|||+|||++++|++|+++|++||+|++|+|++|+.+++++|||||+|.+.++|++||+.++ ..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3456799999999999999999999999999999999999999999999999999999999999988 579999999999
Q ss_pred ccCC
Q 023688 99 ASLG 102 (278)
Q Consensus 99 A~~~ 102 (278)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8643
No 131
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.9e-18 Score=130.17 Aligned_cols=77 Identities=18% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
.+...++|||+|||+++++++|+++|++||.|++|+|+ +++|||||+|.+.++|++||+.++ ..|+|++|+|+
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 96 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTG 96 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 44557899999999999999999999999999999987 357899999999999999999988 67999999999
Q ss_pred EccC
Q 023688 98 LASL 101 (278)
Q Consensus 98 ~A~~ 101 (278)
+|++
T Consensus 97 ~a~~ 100 (101)
T 2la4_A 97 WGKE 100 (101)
T ss_dssp BCCC
T ss_pred eccC
Confidence 9975
No 132
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=133.79 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
.....++|||+||++++++++|+ ++|++||.|++|.+.. ++++||||||+|.+.++|++||+.++ ..|+|+.
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 44567899999999999999876 6999999999988753 58899999999999999999999999 5799999
Q ss_pred EEEEEccCCC
Q 023688 94 ANCNLASLGA 103 (278)
Q Consensus 94 l~V~~A~~~~ 103 (278)
|+|++|+.+.
T Consensus 102 l~V~~a~~~~ 111 (127)
T 2a3j_A 102 LVITFSETPQ 111 (127)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEccCcc
Confidence 9999997643
No 133
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.73 E-value=6.1e-18 Score=127.82 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
..+...++|||+|||+++++++|+++|++||.|+.+ ..+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 11 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 85 (96)
T 1fjc_A 11 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 85 (96)
T ss_dssp STTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 455678899999999999999999999999988765 3368999999999999999999999988 5799999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
++++++
T Consensus 86 ~~a~~~ 91 (96)
T 1fjc_A 86 YYTGEK 91 (96)
T ss_dssp EECSSS
T ss_pred EEcCCC
Confidence 999754
No 134
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.3e-17 Score=123.68 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=70.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.......++|||+|| ++++++|+++|++||+|++|+|. +++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 9 ~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 80 (97)
T 1x5p_A 9 RRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLK 80 (97)
T ss_dssp CCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred cCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 334556789999996 99999999999999999999884 468899999999999999999988 579999999
Q ss_pred EEEccCCCC
Q 023688 96 CNLASLGAH 104 (278)
Q Consensus 96 V~~A~~~~~ 104 (278)
|++++++..
T Consensus 81 v~~a~~~~~ 89 (97)
T 1x5p_A 81 VNIARKQPM 89 (97)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCCC
Confidence 999976543
No 135
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.73 E-value=2.6e-17 Score=127.74 Aligned_cols=75 Identities=23% Similarity=0.480 Sum_probs=68.4
Q ss_pred CCCCcEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 20 DTTFTKIFVGGLAWE-TQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
....++|||+|||++ +++++|+++|++||.|++|+| ++|||||+|++.++|++||+.++ ..|+|++|+|+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 344589999999999 999999999999999999988 57899999999999999999888 67999999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
+++..
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99743
No 136
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=5e-18 Score=135.53 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCE----EEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEI----LEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRAN 95 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I----~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~ 95 (278)
....++|||+|||++++|++|+++|++||.| .+|+|++|+ +++++|||||+|.+.++|++||+.....|++|.|+
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~-~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP-DGRPTGDAFVLFACEEYAQNALRKHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT-TSCEEEEEEECCSSHHHHHHHHTTTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeEEE
Confidence 3556899999999999999999999999976 689999985 79999999999999999999999844679999999
Q ss_pred EEEccC
Q 023688 96 CNLASL 101 (278)
Q Consensus 96 V~~A~~ 101 (278)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 998864
No 137
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.73 E-value=6.4e-18 Score=126.75 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=67.6
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
...|||+||++.+||++|+++|.+||+|++++++. +||||||+|.++++|++|++.|| .+|+||.|+|++|.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 56899999999999999999999999999999875 58999999999999999999999 57999999999994
No 138
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=9e-18 Score=126.28 Aligned_cols=78 Identities=22% Similarity=0.414 Sum_probs=67.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCC-EEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC--ccCCeeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGE-ILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP--VIDGRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~-I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~--~i~Gr~l~ 95 (278)
.+...++|||+|||++++|++|+++|++||. |..+.+. ++|||||+|.+.++|++||+.++. +|+|++|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 5555552 478999999999999999998874 69999999
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|++++++.
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998653
No 139
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=1.3e-17 Score=125.26 Aligned_cols=80 Identities=23% Similarity=0.434 Sum_probs=63.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCN 97 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~ 97 (278)
......++|||+|||++++|++|+++|++||.|++|+|+++ +||||||+|++.++|+++.. ....++|++|.|+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~~~~-~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQSLCG-EDLIIKGISVHIS 79 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHHHTT-CEEEETTEEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHHHcC-CCcccCCEEEEEE
Confidence 34566789999999999999999999999999999999874 78999999999999985432 2335789999999
Q ss_pred EccCCC
Q 023688 98 LASLGA 103 (278)
Q Consensus 98 ~A~~~~ 103 (278)
+|.++.
T Consensus 80 ~a~~k~ 85 (89)
T 3d2w_A 80 NAEPKH 85 (89)
T ss_dssp ECC---
T ss_pred EcCCCC
Confidence 998654
No 140
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.72 E-value=2.1e-17 Score=139.70 Aligned_cols=82 Identities=27% Similarity=0.403 Sum_probs=76.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
....++|||+|||+++++++|+++|++||.|++|.|+.++ +++++|||||+|.+.++|++||+.++ ..|+|+.|+|++
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999999998 89999999999999999999999888 579999999999
Q ss_pred ccCC
Q 023688 99 ASLG 102 (278)
Q Consensus 99 A~~~ 102 (278)
|...
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 9754
No 141
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.72 E-value=8e-18 Score=127.63 Aligned_cols=77 Identities=22% Similarity=0.484 Sum_probs=68.4
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 19 NDTTFTKIFVGGLAW-ETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
.....++|||+|||+ ++++++|+++|++||.|++|+|. +|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 455678999999998 99999999999999999999884 6899999999999999999888 5799999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
++++.+.
T Consensus 78 ~~a~~~~ 84 (96)
T 2kvi_A 78 EVSSSNA 84 (96)
T ss_dssp EEEECCC
T ss_pred EEcCcCC
Confidence 9997653
No 142
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.6e-17 Score=130.46 Aligned_cols=79 Identities=16% Similarity=0.225 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC---CccCCeeE
Q 023688 19 NDTTFTKIFVGGLAWE-TQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS---PVIDGRRA 94 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~---~~i~Gr~l 94 (278)
.....++|||+|||++ ++|++|+++|++||+|++|+|++ +||||||+|++.++|++|++.++ .+|+|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556789999999998 99999999999999999999974 47899999999999999999875 35999999
Q ss_pred EEEEccCCC
Q 023688 95 NCNLASLGA 103 (278)
Q Consensus 95 ~V~~A~~~~ 103 (278)
+|.+|+.+.
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999997543
No 143
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.7e-17 Score=134.33 Aligned_cols=83 Identities=31% Similarity=0.517 Sum_probs=78.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
......++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 161 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 161 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEE
Confidence 455667899999999999999999999999999999999999899999999999999999999999888 6799999999
Q ss_pred EEcc
Q 023688 97 NLAS 100 (278)
Q Consensus 97 ~~A~ 100 (278)
++|+
T Consensus 162 ~~a~ 165 (166)
T 3md3_A 162 NWAA 165 (166)
T ss_dssp EESC
T ss_pred EecC
Confidence 9986
No 144
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.1e-17 Score=124.84 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=71.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEA-VVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
.....++|||+|||+++++++|+++|++||.|++| .|+.++.+++ |||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 44557899999999999999999999999999999 5888776543 9999999999999999888 6799999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
++|.++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999865
No 145
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1e-17 Score=124.82 Aligned_cols=77 Identities=23% Similarity=0.492 Sum_probs=66.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEcc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLAS 100 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~ 100 (278)
...++|||+|||++++|++|+++|++||.|++|+|+.+ ++|||||+|++.++|++|+.. ...+++++|+|.+++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~~-~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCGE-DLIIKGISVHISNAE 76 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTTC-EEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhcC-CceeCCEEEEEEecC
Confidence 45689999999999999999999999999999999865 689999999999999876443 345799999999997
Q ss_pred CCC
Q 023688 101 LGA 103 (278)
Q Consensus 101 ~~~ 103 (278)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 146
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.71 E-value=1.5e-17 Score=129.90 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=73.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
....++|||+|||+++++++|+++|++||.|.+|.|+.+ ++++|||||+|.+.++|++||+.++ ..|+|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345679999999999999999999999999999999976 4569999999999999999999888 679999999999
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
+.+..
T Consensus 82 a~~~~ 86 (115)
T 3lqv_A 82 YNANR 86 (115)
T ss_dssp CCHHH
T ss_pred ecCCh
Confidence 97543
No 147
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.71 E-value=1.2e-17 Score=126.30 Aligned_cols=82 Identities=21% Similarity=0.361 Sum_probs=73.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
+....++|||+|||+++++++|+ ++|++||.|.+|.|+. +++++|||||+|.+.++|++|++.++ ..|+|+.
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 80 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 80 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcE
Confidence 44567899999999999999999 9999999999998874 57889999999999999999999888 5799999
Q ss_pred EEEEEccCCC
Q 023688 94 ANCNLASLGA 103 (278)
Q Consensus 94 l~V~~A~~~~ 103 (278)
|+|++++++.
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999998653
No 148
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.71 E-value=4.1e-17 Score=124.31 Aligned_cols=77 Identities=19% Similarity=0.471 Sum_probs=68.9
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 18 YNDTTFTKIFVGGLAW-ETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
......++|||+|||+ ++++++|+++|++||.|.+|+|. +|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4556678999999998 99999999999999999999883 7899999999999999999888 579999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|++++.+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9999754
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.71 E-value=2.8e-17 Score=134.44 Aligned_cols=81 Identities=23% Similarity=0.395 Sum_probs=73.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 17 DYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.......++|||+|||+++++++|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.++ ..|+|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345566789999999999999999999999999999999876 58999999999999999999888 679999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|++++++
T Consensus 142 v~~a~~~ 148 (150)
T 2i2y_A 142 VELSNGE 148 (150)
T ss_dssp EEECCCC
T ss_pred EEEcCCC
Confidence 9999754
No 150
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.3e-17 Score=130.63 Aligned_cols=79 Identities=23% Similarity=0.381 Sum_probs=70.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCC---CCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNT---GRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANC 96 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~t---g~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V 96 (278)
....++|||+|||++++|++|+++|++||.|+ +.++.++.+ ++++|||||+|++.++|++||+.++ .++|+.|.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~-~~~G~~~~~ 82 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL-EEDGKLYLC 82 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE-EETTEEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh-hcCCcEEEe
Confidence 34568999999999999999999999999999 888888877 7999999999999999999999884 588888888
Q ss_pred EEcc
Q 023688 97 NLAS 100 (278)
Q Consensus 97 ~~A~ 100 (278)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 7654
No 151
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=1.8e-17 Score=130.10 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=64.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee-----
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR----- 93 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~----- 93 (278)
....++|||+|||++++|++|+++|++||+|++|.|+.| |||||+|++.++|++||+.|+ .+|+|++
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 345689999999999999999999999999999999875 899999999999999999988 6799988
Q ss_pred EEEEEccC
Q 023688 94 ANCNLASL 101 (278)
Q Consensus 94 l~V~~A~~ 101 (278)
|+|+.+.+
T Consensus 86 i~v~~~~~ 93 (115)
T 3beg_B 86 IRVKVDGP 93 (115)
T ss_dssp CEEEECC-
T ss_pred EEeccCCC
Confidence 67776654
No 152
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=5.4e-17 Score=138.70 Aligned_cols=82 Identities=26% Similarity=0.502 Sum_probs=77.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+|||.++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++||+.++ ..|+|++|+|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 345799999999999999999999999999999999999899999999999999999999999988 6799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
++.
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 865
No 153
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.70 E-value=5.2e-17 Score=132.80 Aligned_cols=80 Identities=29% Similarity=0.452 Sum_probs=75.7
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASL 101 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~ 101 (278)
.++|||+|||++++|++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 5799999999999999999999999999999999999899999999999999999999999888 579999999999975
Q ss_pred C
Q 023688 102 G 102 (278)
Q Consensus 102 ~ 102 (278)
.
T Consensus 82 ~ 82 (167)
T 1fxl_A 82 S 82 (167)
T ss_dssp C
T ss_pred C
Confidence 4
No 154
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.6e-17 Score=131.66 Aligned_cols=79 Identities=20% Similarity=0.247 Sum_probs=70.6
Q ss_pred cEEEEcCC----CCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCC----HHH----HHHHHh--CCC-Cc
Q 023688 24 TKIFVGGL----AWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD----PEA----AMRACQ--NPS-PV 88 (278)
Q Consensus 24 ~~lfVgnL----p~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~----~e~----A~~Al~--~~~-~~ 88 (278)
++|||+|| ++.++|++|+++|+.||+|.+|.++.|+.||+++|||||+|.+ +++ |.+|++ .++ ..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 333 888988 667 47
Q ss_pred cCCeeEEEEEccCC
Q 023688 89 IDGRRANCNLASLG 102 (278)
Q Consensus 89 i~Gr~l~V~~A~~~ 102 (278)
|+|++|+|++.+..
T Consensus 83 I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 83 IMGFKFEVILNKHS 96 (136)
T ss_dssp ETTEEEEEEECCTT
T ss_pred ecCcEEEEEECccc
Confidence 99999999998643
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=128.12 Aligned_cols=78 Identities=18% Similarity=0.214 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
+...++|||+|||+++++++|+++|++||.|++|.|+. +++||||+|.+.++|++||+.++ ..|+|+.|.|+|
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 80 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEW 80 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34567999999999999999999999999999998864 57899999999999999999998 679999999999
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
|+...
T Consensus 81 a~~~~ 85 (111)
T 1whx_A 81 APIGV 85 (111)
T ss_dssp EETTT
T ss_pred CCCCc
Confidence 97643
No 156
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.70 E-value=5.2e-17 Score=133.30 Aligned_cols=81 Identities=25% Similarity=0.362 Sum_probs=76.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..++|||+|||+++++++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 35799999999999999999999999999999999999899999999999999999999999888 57999999999997
Q ss_pred CC
Q 023688 101 LG 102 (278)
Q Consensus 101 ~~ 102 (278)
+.
T Consensus 82 ~~ 83 (168)
T 1b7f_A 82 PG 83 (168)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 157
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=9.3e-17 Score=135.40 Aligned_cols=84 Identities=26% Similarity=0.433 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNL 98 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~ 98 (278)
....++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.++ ..|+|+.|+|++
T Consensus 111 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 190 (198)
T 2yh0_A 111 PDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190 (198)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 3567899999999999999999999999999999999999899999999999999999999999988 679999999999
Q ss_pred ccCCC
Q 023688 99 ASLGA 103 (278)
Q Consensus 99 A~~~~ 103 (278)
++++.
T Consensus 191 a~~~~ 195 (198)
T 2yh0_A 191 ASVGA 195 (198)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98654
No 158
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.68 E-value=1.9e-16 Score=132.17 Aligned_cols=81 Identities=19% Similarity=0.334 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCC--eeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG--RRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G--r~l~ 95 (278)
......+|||+||+++++|++|+++|++||+|++|+|..+ +++|||||+|++.++|++|++.|+ .+|.| ++|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 3455678999999999999999999999999999998754 257899999999999999999999 46855 9999
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|++++++.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99998753
No 159
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=8.4e-18 Score=136.48 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=72.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEE--E---eeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAV--V---ITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~--i---~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
....++|||+|||+++++++|+++|++||.|..+. + +....+++++|||||+|.+.++|++||+.++ ..|+|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45668999999999999999999999999987641 1 1112368999999999999999999999988 5799999
Q ss_pred EEEEEccCCCCC
Q 023688 94 ANCNLASLGAHK 105 (278)
Q Consensus 94 l~V~~A~~~~~~ 105 (278)
|.|.+|+....+
T Consensus 122 l~V~~a~~~~~~ 133 (143)
T 3egn_A 122 MVVQFARSARPK 133 (143)
T ss_dssp CEEEECCCSCC-
T ss_pred EEEEECCCCCCc
Confidence 999999765443
No 160
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.68 E-value=5.2e-17 Score=121.17 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+|||++++|++|+++|++| +|++|+|. +++|||||+|.+.++|++|++.++ ..|+|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 346789999999999999999999999 99999884 578999999999999999999988 5799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
..+
T Consensus 76 ~~~ 78 (88)
T 1wg1_A 76 PTD 78 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 161
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=6.3e-17 Score=132.85 Aligned_cols=80 Identities=34% Similarity=0.644 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..++|||+|||+++++++|+++|++||.|++++|+.|+.+++++|||||+|.+.++|++|++ ++ ..|+|++|+|++|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 35799999999999999999999999999999999999899999999999999999999999 56 67999999999997
Q ss_pred CC
Q 023688 101 LG 102 (278)
Q Consensus 101 ~~ 102 (278)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 162
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.68 E-value=1.5e-16 Score=131.26 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=75.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+|||+++++++|+++|++||.|++|+|+.++.+++++|||||+|.+.++|++|++.++ ..|+|++|+|++|
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 446899999999999999999999999999999999998899999999999999999999999988 6799999999998
Q ss_pred c
Q 023688 100 S 100 (278)
Q Consensus 100 ~ 100 (278)
.
T Consensus 172 s 172 (172)
T 2g4b_A 172 S 172 (172)
T ss_dssp C
T ss_pred C
Confidence 3
No 163
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.67 E-value=1.1e-16 Score=131.34 Aligned_cols=79 Identities=32% Similarity=0.746 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEccC
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASL 101 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~~ 101 (278)
+.++|||+|||++++|++|+++|++||.|.+|+|++++.+++++|||||+|.+.++|++||+.. +.|+|+.|.|.++.+
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~-~~~~g~~i~v~~~~~ 80 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQ-HILDGKVIDPKRAIP 80 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSC-CEETTEECCCEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcc-cccCCeEcccccccc
Confidence 4689999999999999999999999999999999999989999999999999999999999963 679999999998864
No 164
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.67 E-value=3e-16 Score=134.31 Aligned_cols=80 Identities=16% Similarity=0.232 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEccC
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASL 101 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~~ 101 (278)
..++|||+|||+++++++|+++|++||.|.+|+|+++. +++++|||||+|++.++|++||+.++..|+|+.|+|++++.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEhHH
Confidence 35899999999999999999999999999999999987 48999999999999999999999988899999999999865
Q ss_pred C
Q 023688 102 G 102 (278)
Q Consensus 102 ~ 102 (278)
-
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-16 Score=124.85 Aligned_cols=78 Identities=18% Similarity=0.249 Sum_probs=68.5
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc-----C
Q 023688 19 NDTTFTKIFV--GGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI-----D 90 (278)
Q Consensus 19 ~~~~~~~lfV--gnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i-----~ 90 (278)
.+...++||| +||+++++|++|+++|++||+|++|.|+.+ ||||||+|++.++|++|++.|+ .+| .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 4456789999 779999999999999999999999987642 7899999999999999999999 566 6
Q ss_pred CeeEEEEEccCC
Q 023688 91 GRRANCNLASLG 102 (278)
Q Consensus 91 Gr~l~V~~A~~~ 102 (278)
++.|.|.+++..
T Consensus 95 g~~l~v~~a~~~ 106 (114)
T 2cq2_A 95 KITLYLNFVEKV 106 (114)
T ss_dssp EEECEEEEESCC
T ss_pred CcEEEEEecccC
Confidence 899999999743
No 166
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.66 E-value=1.4e-16 Score=137.37 Aligned_cols=79 Identities=30% Similarity=0.476 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..++|||+||++++++++|+++|++||.|++|+|++|+ +.++|||||+|.+.++|++||+.|+ .+|+|++|+|++|+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999985 5589999999999999999999988 67999999999997
Q ss_pred CC
Q 023688 101 LG 102 (278)
Q Consensus 101 ~~ 102 (278)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 64
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3e-16 Score=128.08 Aligned_cols=78 Identities=26% Similarity=0.405 Sum_probs=72.1
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEccCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLASLG 102 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~~~ 102 (278)
++|||+|||+++++++|+++|++||.|.+|+|+.++. ++++|||||+|.+.++|++|++.++ ..|.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999975 7899999999999999999998888 6799999999999654
No 168
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.65 E-value=2e-16 Score=135.07 Aligned_cols=82 Identities=29% Similarity=0.466 Sum_probs=73.2
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
...++|||+|||++++|++|+++|++||.|++|+|++++.+++++|||||+|.+.++|++||+.++ ..|+|+.|+|.++
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~ 105 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRP 105 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecC
Confidence 346899999999999999999999999999999999999899999999999999999999999887 6799999999887
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
...
T Consensus 106 ~~~ 108 (216)
T 2qfj_A 106 SNI 108 (216)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 169
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.65 E-value=6.3e-16 Score=126.78 Aligned_cols=81 Identities=26% Similarity=0.463 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCC--eeEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG--RRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G--r~l~ 95 (278)
.....++|||+|||.++++++|+++|++||.|+++.|+.++.+++++|||||+|.+.++|++|++.++ ..|+| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34567899999999999999999999999999999999999889999999999999999999999988 56877 9999
Q ss_pred EEEc
Q 023688 96 CNLA 99 (278)
Q Consensus 96 V~~A 99 (278)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 170
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=5e-16 Score=114.83 Aligned_cols=72 Identities=17% Similarity=0.411 Sum_probs=65.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhC----C-------CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-C
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-P 87 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~----G-------~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~ 87 (278)
+...++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+ .++ .
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3467899999999999999999999999 8 9999998754 789999999999999999 777 6
Q ss_pred ccCCeeEEEEE
Q 023688 88 VIDGRRANCNL 98 (278)
Q Consensus 88 ~i~Gr~l~V~~ 98 (278)
.|+|++|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 79999999874
No 171
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.64 E-value=3.8e-16 Score=123.93 Aligned_cols=78 Identities=19% Similarity=0.307 Sum_probs=69.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
......++|||+|| ++++++|+++|++||.|++|.|. +++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999996 79999999999999999999885 468999999999999999999988 6799999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
++++++.
T Consensus 106 ~~a~~~~ 112 (121)
T 2bz2_A 106 NIARKQP 112 (121)
T ss_dssp EECCSSC
T ss_pred EEeCCCC
Confidence 9998653
No 172
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.63 E-value=1e-15 Score=125.09 Aligned_cols=80 Identities=24% Similarity=0.447 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee--EEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR--ANC 96 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~--l~V 96 (278)
....++|||+|||.++++++|+++|++||.|++++++.++.+++++|||||+|.+.++|++|++.++ ..|+|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 4456799999999999999999999999999999999999889999999999999999999999988 5799965 788
Q ss_pred EEc
Q 023688 97 NLA 99 (278)
Q Consensus 97 ~~A 99 (278)
+||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 775
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=4.1e-15 Score=118.75 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=67.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHhCCC-CccCC--eeEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFKDPEAAMRACQNPS-PVIDG--RRAN 95 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~-aFV~F~~~e~A~~Al~~~~-~~i~G--r~l~ 95 (278)
......|||+||++.+++++|+++|++||+|++|+|+.. +|| |||+|++.++|++|++.|+ .+|.| +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 344556889999999999999999999999999998652 276 9999999999999999999 56877 6899
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|++|+++.
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99998653
No 174
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.63 E-value=9e-16 Score=126.47 Aligned_cols=81 Identities=28% Similarity=0.394 Sum_probs=72.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCC--CcccEEEEEeCCHHHHHHHHhCCCC-ccC---CeeEE
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTG--RSKGYGFVTFKDPEAAMRACQNPSP-VID---GRRAN 95 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg--~skG~aFV~F~~~e~A~~Al~~~~~-~i~---Gr~l~ 95 (278)
+.++|||+|||++++|++|+++|++||.|++|+|++++.++ +++|||||+|.+.++|++|++.++. .+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 46799999999999999999999999999999999999876 8999999999999999999998883 443 57778
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
+.++...
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8877644
No 175
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=2.1e-15 Score=121.31 Aligned_cols=79 Identities=19% Similarity=0.383 Sum_probs=69.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccE-EEEEeCCHHHHHHHHhCCC-CccCC--eeEE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGY-GFVTFKDPEAAMRACQNPS-PVIDG--RRAN 95 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~-aFV~F~~~e~A~~Al~~~~-~~i~G--r~l~ 95 (278)
.....+|||+||++.++|++|+++|++||+|++|+|+.+ .+|| |||+|++.++|++|++.|+ ..|.| +.|+
T Consensus 25 ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~Lr 99 (130)
T 3zzy_A 25 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 99 (130)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred CCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEE
Confidence 355678999999999999999999999999999988764 3678 9999999999999999999 56877 8999
Q ss_pred EEEccCCC
Q 023688 96 CNLASLGA 103 (278)
Q Consensus 96 V~~A~~~~ 103 (278)
|+++++..
T Consensus 100 I~~ak~~~ 107 (130)
T 3zzy_A 100 IDFSKLTS 107 (130)
T ss_dssp EEECSCSS
T ss_pred EEecCCCc
Confidence 99998653
No 176
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.62 E-value=1.4e-15 Score=125.36 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=72.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccC---CeeE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VID---GRRA 94 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~---Gr~l 94 (278)
.....++|||+|||+++++++|+++|++||.|++|+|++++ +++++|||||+|.+.++|++|++.++. .+. +++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34467899999999999999999999999999999999996 499999999999999999999999983 444 4999
Q ss_pred EEEEcc
Q 023688 95 NCNLAS 100 (278)
Q Consensus 95 ~V~~A~ 100 (278)
+|++|.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999984
No 177
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.61 E-value=1.9e-15 Score=134.91 Aligned_cols=82 Identities=22% Similarity=0.366 Sum_probs=74.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMR----RYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
+....++|||+|||++++|++|+ ++|++||.|++|+|++ ++++||||||+|.+.++|++||+.++ ..|+|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45678899999999999999977 8999999999999886 58899999999999999999999998 5799999
Q ss_pred EEEEEccCCC
Q 023688 94 ANCNLASLGA 103 (278)
Q Consensus 94 l~V~~A~~~~ 103 (278)
|+|++++.+.
T Consensus 82 l~v~~a~~~~ 91 (282)
T 3pgw_A 82 MRIQYAKTDS 91 (282)
T ss_pred EEEEEeccCc
Confidence 9999997654
No 178
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.61 E-value=1e-15 Score=126.83 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
......++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++||+.++ ..|+|++|+|
T Consensus 94 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v 168 (175)
T 1fje_B 94 KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSL 168 (175)
T ss_dssp STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEE
T ss_pred cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 345567899999999999999999999999988765 4578999999999999999999999988 6799999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
++|+++
T Consensus 169 ~~a~~k 174 (175)
T 1fje_B 169 YYTGEK 174 (175)
T ss_dssp EECSSC
T ss_pred EecCCC
Confidence 999754
No 179
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=3.2e-15 Score=113.25 Aligned_cols=72 Identities=19% Similarity=0.305 Sum_probs=63.5
Q ss_pred CcE-EEEcCCCCCCCHHH----HHHHHhhC-CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 23 FTK-IFVGGLAWETQRDT----MRRYFEQF-GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 23 ~~~-lfVgnLp~~~tee~----L~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
..+ |||+|||+++++++ |+++|++| |+|.+| |+ |+|||+|.+.++|++|++.|+ ..|.||+|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 444 99999999999988 55899999 599998 34 999999999999999999999 579999999
Q ss_pred EEEccCCCC
Q 023688 96 CNLASLGAH 104 (278)
Q Consensus 96 V~~A~~~~~ 104 (278)
|.+|+.+..
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999986644
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.61 E-value=1.8e-15 Score=130.54 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=69.9
Q ss_pred CCcEEEEcCCC-CCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 22 TFTKIFVGGLA-WETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 22 ~~~~lfVgnLp-~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
+.++|||+||+ +++++++|+++|++||.|++|+|+++ ++|||||+|.+.++|++||+.|+ ..|.|++|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 45799999999 89999999999999999999999875 37999999999999999999999 6799999999999
Q ss_pred cCC
Q 023688 100 SLG 102 (278)
Q Consensus 100 ~~~ 102 (278)
+.+
T Consensus 78 ~~~ 80 (205)
T 3tyt_A 78 KQP 80 (205)
T ss_dssp SCS
T ss_pred cCC
Confidence 754
No 181
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.59 E-value=3.6e-15 Score=115.59 Aligned_cols=82 Identities=15% Similarity=0.220 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCC-----CCCHHHHHHHHhhCCCEEEEEEeeCCCC-CCcccEEEEEeCCHHHHHHHHhCCC-CccCCe
Q 023688 20 DTTFTKIFVGGLAW-----ETQRDTMRRYFEQFGEILEAVVITDKNT-GRSKGYGFVTFKDPEAAMRACQNPS-PVIDGR 92 (278)
Q Consensus 20 ~~~~~~lfVgnLp~-----~~tee~L~~~F~~~G~I~~v~i~~d~~t-g~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr 92 (278)
....+.|+|.||-. +-++++|+++|++||.|++|.|++++.+ ++++||+||+|.+.++|++|++.|+ ..++||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 34678999999962 2368999999999999999999998754 6899999999999999999999999 579999
Q ss_pred eEEEEEccC
Q 023688 93 RANCNLASL 101 (278)
Q Consensus 93 ~l~V~~A~~ 101 (278)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999964
No 182
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.58 E-value=4.9e-15 Score=129.10 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=72.8
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 18 YNDTTFTKIFVGGLAW-ETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
......++|||+|||+ ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++||+.++ ..|+|+.|+
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~ 103 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIR 103 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 3455678999999999 99999999999999999999999875 7899999999999999999888 679999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|.+++..
T Consensus 104 v~~a~~~ 110 (229)
T 2adc_A 104 ITLSKHQ 110 (229)
T ss_dssp EECCSCC
T ss_pred EEEecCc
Confidence 9999755
No 183
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.8e-14 Score=112.31 Aligned_cols=82 Identities=20% Similarity=0.277 Sum_probs=69.6
Q ss_pred CCCCCCcEEEEcCCCCCCC-----------HHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 18 YNDTTFTKIFVGGLAWETQ-----------RDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~t-----------ee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
......++|+|.||-...+ +++|+++|++||.|++|.| .|+ .++|||||+|.+.++|++|++.++
T Consensus 10 ~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~ln 85 (112)
T 2dit_A 10 SRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLD 85 (112)
T ss_dssp CCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHST
T ss_pred CCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcC
Confidence 3556788999999944332 6899999999999999955 554 379999999999999999999999
Q ss_pred -CccCCeeEEEEEccCCC
Q 023688 87 -PVIDGRRANCNLASLGA 103 (278)
Q Consensus 87 -~~i~Gr~l~V~~A~~~~ 103 (278)
..|+|++|+|++++++.
T Consensus 86 g~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 86 GRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TCEETTEECEEEECCSCC
T ss_pred CCEECCcEEEEEEeCCCC
Confidence 57999999999997654
No 184
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=4e-15 Score=131.43 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=69.3
Q ss_pred CCCCCcEEEEcCCCCCC---------CHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Cc
Q 023688 19 NDTTFTKIFVGGLAWET---------QRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PV 88 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~---------tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~ 88 (278)
.+...++|||+||+.++ +|++|+++|++||+|++|+|+. +||||||+|.++++|++|++.|+ ..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~------~kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE------SKNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG------GGTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC------CCCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 45678899999999998 7999999999999999999985 47899999999999999999998 46
Q ss_pred c------------CCeeEEEEEccCCC
Q 023688 89 I------------DGRRANCNLASLGA 103 (278)
Q Consensus 89 i------------~Gr~l~V~~A~~~~ 103 (278)
| +|+.|.|+||+...
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred EeccccccccccCCCCEEEEEEccCCC
Confidence 7 89999999997543
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.57 E-value=4.7e-15 Score=133.00 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=74.3
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEeeCCC-CCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 19 NDTTFTKIFVGGLAWE-TQRDTMRRYFEQFGEILEAVVITDKN-TGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~-tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
.....++|||+|||++ +++++|+++|++||.|++|+|+.+.. |++++|||||+|.+.++|++|| .++ ..|+|++|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456689999999999 99999999999999999999999876 6999999999999999999999 888 579999999
Q ss_pred EEEccCC
Q 023688 96 CNLASLG 102 (278)
Q Consensus 96 V~~A~~~ 102 (278)
|.+|+++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999754
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.56 E-value=1.6e-14 Score=128.81 Aligned_cols=77 Identities=19% Similarity=0.234 Sum_probs=70.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccC-CeeEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVID-GRRANC 96 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~-Gr~l~V 96 (278)
.....++|||+||++++++++|+++|++||.|++|+|+.++ +|||||+|.+.++|++||+.++ ..|+ |+.|+|
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v 277 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKI 277 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEE
Confidence 44567899999999999999999999999999999999654 5899999999999999999999 5688 999999
Q ss_pred EEcc
Q 023688 97 NLAS 100 (278)
Q Consensus 97 ~~A~ 100 (278)
.||+
T Consensus 278 ~~ak 281 (282)
T 3pgw_A 278 SFAK 281 (282)
T ss_pred EEec
Confidence 9986
No 187
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.56 E-value=1.5e-14 Score=129.15 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=76.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
..++|||+|||+++++++|+++|++||.|.+++|+.++.+++++|||||+|.+.++|++|++.++ ..|+|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 45799999999999999999999999999999999999999999999999999999999998888 67999999999997
Q ss_pred CC
Q 023688 101 LG 102 (278)
Q Consensus 101 ~~ 102 (278)
.+
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 188
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.56 E-value=1.4e-15 Score=126.01 Aligned_cols=83 Identities=17% Similarity=0.255 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 18 YNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 18 ~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
......++|||+|||+++++++|+++|++||.|.. .++.+..+++++|||||+|.+.++|++||+ ++ ..|.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 35667889999999999999999999999998766 345555678999999999999999999996 66 6799999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
.++..+
T Consensus 86 ~~~~~~ 91 (175)
T 1fje_B 86 EKPKGR 91 (175)
T ss_dssp ECCCCS
T ss_pred ecCCCc
Confidence 999754
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.54 E-value=1.3e-14 Score=129.57 Aligned_cols=85 Identities=15% Similarity=0.167 Sum_probs=77.5
Q ss_pred CCCCCcEEEEcCCCCCC-CHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEE
Q 023688 19 NDTTFTKIFVGGLAWET-QRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANC 96 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~-tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V 96 (278)
.....++|||+|||+++ ++++|+++|++||.|++|+|+.+. +++++|+|||+|.+.++|.+|++.++ ..|+|++|+|
T Consensus 180 ~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 258 (284)
T 3smz_A 180 ALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV 258 (284)
T ss_dssp TTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred ccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEE
Confidence 44567899999999995 999999999999999999999987 69999999999999999999999988 6799999999
Q ss_pred EEccCCCC
Q 023688 97 NLASLGAH 104 (278)
Q Consensus 97 ~~A~~~~~ 104 (278)
++++++..
T Consensus 259 ~~a~~~~~ 266 (284)
T 3smz_A 259 SFCAPGPP 266 (284)
T ss_dssp EECCSSSC
T ss_pred EEecCCCc
Confidence 99986543
No 190
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.52 E-value=1.4e-14 Score=122.55 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 22 TFTKIFVGGLAW-ETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 22 ~~~~lfVgnLp~-~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
..++|||+|||+ ++++++|+++|++||.|++|+|++++ +|||||+|.+.++|++|++.++ ..|+|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 357999999999 99999999999999999999998874 7899999999999999999888 5799999999999
Q ss_pred cCCC
Q 023688 100 SLGA 103 (278)
Q Consensus 100 ~~~~ 103 (278)
+...
T Consensus 77 ~~~~ 80 (198)
T 1qm9_A 77 KHQN 80 (198)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 7553
No 191
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=3.2e-13 Score=103.72 Aligned_cols=76 Identities=20% Similarity=0.201 Sum_probs=63.9
Q ss_pred CCcEEEEcCCC-------CCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeE
Q 023688 22 TFTKIFVGGLA-------WETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRA 94 (278)
Q Consensus 22 ~~~~lfVgnLp-------~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l 94 (278)
..++|-|.-.. .+++|++|+++|++||+|++|.|+ +++||||||+|++.++|++||+.++ .+.++.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~-~~~g~~l 82 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEV-GLVDNPL 82 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCC-BCSSSBC
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcC-CCCCCeE
Confidence 35566666543 468999999999999999999988 3679999999999999999999854 4689999
Q ss_pred EEEEccCCC
Q 023688 95 NCNLASLGA 103 (278)
Q Consensus 95 ~V~~A~~~~ 103 (278)
+|+|++.+.
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999997654
No 192
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.50 E-value=3.9e-14 Score=125.77 Aligned_cols=83 Identities=25% Similarity=0.483 Sum_probs=73.0
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCC
Q 023688 13 NHPGDYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG 91 (278)
Q Consensus 13 ~~~~~~~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G 91 (278)
..+........++|||+|||+++++++|+++|++||.|.+|.|.++ +|||||+|.+.++|++||+.++ ..|+|
T Consensus 12 ~~p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g 85 (261)
T 3sde_A 12 LKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKS 85 (261)
T ss_dssp CCTTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECC
Confidence 3444455567789999999999999999999999999999998643 7899999999999999999888 67999
Q ss_pred eeEEEEEccC
Q 023688 92 RRANCNLASL 101 (278)
Q Consensus 92 r~l~V~~A~~ 101 (278)
+.|+|.++.+
T Consensus 86 ~~l~v~~a~~ 95 (261)
T 3sde_A 86 RPLRIRFATH 95 (261)
T ss_dssp EECEEEECCC
T ss_pred ceeEeeeccc
Confidence 9999999863
No 193
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.49 E-value=4.1e-14 Score=125.62 Aligned_cols=81 Identities=25% Similarity=0.310 Sum_probs=73.1
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Cc-cC---CeeEEE
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PV-ID---GRRANC 96 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~-i~---Gr~l~V 96 (278)
..++|||+|||.++++++|+++|++||.|++|+|+.| .+++++|||||+|.+.++|.+||+.++ .. +. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4579999999999999999999999999999999999 479999999999999999999999985 43 33 999999
Q ss_pred EEccCCC
Q 023688 97 NLASLGA 103 (278)
Q Consensus 97 ~~A~~~~ 103 (278)
+++....
T Consensus 174 ~~~~~~~ 180 (261)
T 3sde_A 174 EPMEQFD 180 (261)
T ss_dssp EECCCEE
T ss_pred eeccccC
Confidence 9997653
No 194
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.49 E-value=2.4e-14 Score=123.43 Aligned_cols=77 Identities=9% Similarity=0.106 Sum_probs=67.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCE--EEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCe----e
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEI--LEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGR----R 93 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I--~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr----~ 93 (278)
...++|||+|||++++|++|+++|++||.| ++|+|+.++ ++++|||||+|++.++|.+||+.|| .+|+|+ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 345789999999999999999999999999 899998875 5667999999999999999999999 568776 5
Q ss_pred EEEEEc
Q 023688 94 ANCNLA 99 (278)
Q Consensus 94 l~V~~A 99 (278)
+.|++|
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777775
No 195
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.48 E-value=4.8e-14 Score=126.40 Aligned_cols=82 Identities=10% Similarity=0.142 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLA 99 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A 99 (278)
..++|||+|||+++++++|+++|++|| .|.+|.|+.++. ++++|||||+|.+.++|++|++.++ ..|+|+.|.|+++
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 578999999999999999999999999 999999999876 8899999999999999999999888 6799999999999
Q ss_pred cCCCC
Q 023688 100 SLGAH 104 (278)
Q Consensus 100 ~~~~~ 104 (278)
.+...
T Consensus 195 ~~~~~ 199 (292)
T 2ghp_A 195 NPLEK 199 (292)
T ss_dssp CCC--
T ss_pred CCCcc
Confidence 76543
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.47 E-value=1.6e-13 Score=112.91 Aligned_cols=74 Identities=15% Similarity=0.375 Sum_probs=64.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhC----C-------CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI 89 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~----G-------~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i 89 (278)
+.++|||+|||++++|++|+++|++| | .|.++.+. +++|||||+|.+.++|++|+ .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 77777664 34799999999999999999 666 679
Q ss_pred CCeeEEEEEccCC
Q 023688 90 DGRRANCNLASLG 102 (278)
Q Consensus 90 ~Gr~l~V~~A~~~ 102 (278)
+|+.|+|+++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999987643
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.47 E-value=8.4e-14 Score=117.74 Aligned_cols=77 Identities=6% Similarity=0.133 Sum_probs=69.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccC-CeeEEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVID-GRRANCN 97 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~-Gr~l~V~ 97 (278)
...++|||+|||+++++++|+++|++|| .|++|+|+.+ .+|+|||+|.+.++|++|++.++ ..|+ |++|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4478999999999999999999999999 9999999764 27899999999999999999988 5788 9999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
++++.
T Consensus 193 ~a~~~ 197 (198)
T 1qm9_A 193 FSKST 197 (198)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 99753
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.47 E-value=2.1e-14 Score=110.96 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=63.5
Q ss_pred EcCCCCCCCHHHHHHHH------------hhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeE
Q 023688 28 VGGLAWETQRDTMRRYF------------EQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRA 94 (278)
Q Consensus 28 VgnLp~~~tee~L~~~F------------~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l 94 (278)
+.+|++++++++|+++| ++||.|++|+|++++. ++++|||||+|.+.++|++|++.++ ..++||+|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 67888888888877766 9999999999998874 7899999999999999999999999 57999999
Q ss_pred EEEEc
Q 023688 95 NCNLA 99 (278)
Q Consensus 95 ~V~~A 99 (278)
+|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.47 E-value=9.5e-14 Score=107.47 Aligned_cols=81 Identities=12% Similarity=0.071 Sum_probs=69.6
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHHHhhCCCEEEEEEeeCCCC--CCcccEEEEEeCCHHHHHHHHhCCC-C
Q 023688 21 TTFTKIFVGGL--AWETQ--------RDTMRRYFEQFGEILEAVVITDKNT--GRSKGYGFVTFKDPEAAMRACQNPS-P 87 (278)
Q Consensus 21 ~~~~~lfVgnL--p~~~t--------ee~L~~~F~~~G~I~~v~i~~d~~t--g~skG~aFV~F~~~e~A~~Al~~~~-~ 87 (278)
..++.|.|.|+ +.++. +++|+++|++||.|++|+|++++.+ ++++||+||+|.+.++|++|++.|| .
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 45678999998 34443 3689999999999999999998764 4689999999999999999999999 5
Q ss_pred ccCCeeEEEEEccC
Q 023688 88 VIDGRRANCNLASL 101 (278)
Q Consensus 88 ~i~Gr~l~V~~A~~ 101 (278)
.++||.|.|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 79999999999854
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.47 E-value=1.4e-13 Score=119.80 Aligned_cols=77 Identities=6% Similarity=0.133 Sum_probs=69.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccC-CeeEEEE
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVID-GRRANCN 97 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~-Gr~l~V~ 97 (278)
...++|||+|||+++++++|+++|++|| .|++|+|+.+ .+|||||+|.+.++|++||+.++ ..|+ |++|+|.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3468999999999999999999999999 9999999753 37899999999999999999988 5788 9999999
Q ss_pred EccCC
Q 023688 98 LASLG 102 (278)
Q Consensus 98 ~A~~~ 102 (278)
|+++.
T Consensus 224 ~a~~~ 228 (229)
T 2adc_A 224 FSKST 228 (229)
T ss_dssp ECSSC
T ss_pred EecCC
Confidence 99753
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=1.5e-13 Score=115.65 Aligned_cols=74 Identities=15% Similarity=0.380 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhC----C-------CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQF----G-------EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI 89 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~----G-------~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i 89 (278)
..++|||+|||++++|++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|| .++ ..|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 46899999999999999999999999 5 5666555 456899999999999999999 677 579
Q ss_pred CCeeEEEEEccCC
Q 023688 90 DGRRANCNLASLG 102 (278)
Q Consensus 90 ~Gr~l~V~~A~~~ 102 (278)
+|+.|+|.++...
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998654
No 202
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=1.1e-13 Score=109.50 Aligned_cols=80 Identities=14% Similarity=0.176 Sum_probs=69.5
Q ss_pred CCcEEEEcCCC--CCC---CHHHHHHHHhhCCCEEEEEEeeCCC----CCCcccEEEEEeCCHHHHHHHHhCCC-CccCC
Q 023688 22 TFTKIFVGGLA--WET---QRDTMRRYFEQFGEILEAVVITDKN----TGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG 91 (278)
Q Consensus 22 ~~~~lfVgnLp--~~~---tee~L~~~F~~~G~I~~v~i~~d~~----tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G 91 (278)
.++.|+|.|+- .++ -+++|++.|++||.|++|+|++++. +++++||+||+|.+.++|++|++.|| ..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 57889999983 222 3689999999999999999999864 46788999999999999999999999 57999
Q ss_pred eeEEEEEccC
Q 023688 92 RRANCNLASL 101 (278)
Q Consensus 92 r~l~V~~A~~ 101 (278)
|.|.|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999853
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.33 E-value=2.1e-12 Score=119.66 Aligned_cols=77 Identities=17% Similarity=0.237 Sum_probs=64.0
Q ss_pred CCCCCCcEEEEcC--CCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc---CC
Q 023688 18 YNDTTFTKIFVGG--LAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI---DG 91 (278)
Q Consensus 18 ~~~~~~~~lfVgn--Lp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i---~G 91 (278)
..+...++|||+| |+.+++|++|+++|++||+|++|.+.. +||||||+|++.++|++|++.|| .++ .|
T Consensus 13 ~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g 86 (345)
T 3tht_A 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 86 (345)
T ss_dssp CCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred ecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccC
Confidence 3466778999999 578999999999999999999987653 47999999999999999999999 444 34
Q ss_pred e--eEEEEEcc
Q 023688 92 R--RANCNLAS 100 (278)
Q Consensus 92 r--~l~V~~A~ 100 (278)
+ .|.|.++.
T Consensus 87 ~~~~ly~~~~~ 97 (345)
T 3tht_A 87 QKITLYLNFVE 97 (345)
T ss_dssp CEEECEEEECS
T ss_pred CceEEEEEEee
Confidence 5 46667663
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.20 E-value=2.7e-11 Score=95.11 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=63.2
Q ss_pred CCCcEEEEcCCCCCC----------CHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-Ccc
Q 023688 21 TTFTKIFVGGLAWET----------QRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVI 89 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~----------tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i 89 (278)
..++.|.+.|+=..- -+++|+++|++||.|++|.|.++. .+||+||+|.+.++|++|++.|| ..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 345678888763211 136899999999999999987653 58999999999999999999999 579
Q ss_pred CCeeEEEEEccC
Q 023688 90 DGRRANCNLASL 101 (278)
Q Consensus 90 ~Gr~l~V~~A~~ 101 (278)
+||.|.|.++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999853
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=1.4e-10 Score=91.88 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCCCCCCcEEEEcCCCCC-CCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCC-HHHHHHHHhCCC---CccCC
Q 023688 17 DYNDTTFTKIFVGGLAWE-TQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD-PEAAMRACQNPS---PVIDG 91 (278)
Q Consensus 17 ~~~~~~~~~lfVgnLp~~-~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~-~e~A~~Al~~~~---~~i~G 91 (278)
...-...+.|||+||+++ +++++|+++|++||+|..|.++++.. .|||+|.+ .++|++|++.++ .+|++
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 445667889999999999 99999999999999999999998865 59999999 899999999886 36899
Q ss_pred eeEEEEEcc
Q 023688 92 RRANCNLAS 100 (278)
Q Consensus 92 r~l~V~~A~ 100 (278)
..+++++..
T Consensus 86 ~~~~~evL~ 94 (121)
T 1owx_A 86 KEVTWEVLE 94 (121)
T ss_dssp SSEEEEECC
T ss_pred cEEEEEECC
Confidence 888887664
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=7e-10 Score=83.16 Aligned_cols=73 Identities=21% Similarity=0.242 Sum_probs=60.5
Q ss_pred CcEEEEcCCC----CCC-CH---HHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCee
Q 023688 23 FTKIFVGGLA----WET-QR---DTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRR 93 (278)
Q Consensus 23 ~~~lfVgnLp----~~~-te---e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~ 93 (278)
.-+|+|.-++ .++ ++ .+|.+.|++||+|..++|+.|+ +||+|++.++|.+||+ |+ ..++||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 3478887665 223 32 5789999999999999999874 8999999999999999 77 6799999
Q ss_pred EEEEEccCCCC
Q 023688 94 ANCNLASLGAH 104 (278)
Q Consensus 94 l~V~~A~~~~~ 104 (278)
|+|+++++...
T Consensus 78 LkV~lkt~dW~ 88 (91)
T 2dnr_A 78 ITIALKSPSGP 88 (91)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeCCCCcc
Confidence 99999987643
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.85 E-value=4.4e-09 Score=90.75 Aligned_cols=66 Identities=15% Similarity=0.206 Sum_probs=58.9
Q ss_pred CCHHHHHHHHhhCCCEEEEEEeeCC----CCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEEEcc
Q 023688 35 TQRDTMRRYFEQFGEILEAVVITDK----NTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCNLAS 100 (278)
Q Consensus 35 ~tee~L~~~F~~~G~I~~v~i~~d~----~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~~A~ 100 (278)
-.+++|++.|++||+|.++.|+++. .+++++|++||+|.+.++|++|++.|+ ..++||.|.|.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3568999999999999999998554 455899999999999999999999999 57999999999985
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=4.1e-09 Score=79.41 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=59.5
Q ss_pred CCcEEEEcCCCCC------CCH---HHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCC
Q 023688 22 TFTKIFVGGLAWE------TQR---DTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDG 91 (278)
Q Consensus 22 ~~~~lfVgnLp~~------~te---e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~G 91 (278)
..-+|+|.-++.. .++ .+|.+.|++||+|..++|+.|+ +||+|.+.++|.+||+ ++ .+|+|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 4458999887643 232 4689999999999999999884 9999999999999999 77 68999
Q ss_pred eeEEEEEccC
Q 023688 92 RRANCNLASL 101 (278)
Q Consensus 92 r~l~V~~A~~ 101 (278)
|.|+|++..+
T Consensus 85 r~L~V~~k~~ 94 (95)
T 1ufw_A 85 RAVKISGPSS 94 (95)
T ss_dssp EEEEEECCCC
T ss_pred eEEEEeccCC
Confidence 9999998653
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.23 E-value=3.2e-06 Score=65.12 Aligned_cols=72 Identities=14% Similarity=0.165 Sum_probs=63.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhC-----CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEE
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQF-----GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRAN 95 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~-----G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~ 95 (278)
..++|-+-|||..++++.|+.+++.+ |.|++|.+..|.. =|+|+|.|...|-+|.-.++ .+|+||+|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 45678888999999999999999999 9999999998853 79999999999999988888 579999999
Q ss_pred EEEc
Q 023688 96 CNLA 99 (278)
Q Consensus 96 V~~A 99 (278)
|--.
T Consensus 94 ~gTv 97 (117)
T 2l9w_A 94 SGTI 97 (117)
T ss_dssp EECH
T ss_pred ecCH
Confidence 8643
No 210
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=5.7e-05 Score=57.52 Aligned_cols=73 Identities=22% Similarity=0.296 Sum_probs=62.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHHHhh-C----CCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeE
Q 023688 20 DTTFTKIFVGGLAWETQRDTMRRYFEQ-F----GEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRA 94 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~L~~~F~~-~----G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l 94 (278)
..-.++|.|.|||++++++.|+-+|+. . |+|++++... +-|+|+|.+.+.|++.|+...+.|++..|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 345679999999999999999999986 2 5888887753 36899999999999999998899999999
Q ss_pred EEEEcc
Q 023688 95 NCNLAS 100 (278)
Q Consensus 95 ~V~~A~ 100 (278)
.|.-..
T Consensus 77 sV~P~~ 82 (104)
T 2dhx_A 77 SLRPAP 82 (104)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 997654
No 211
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.50 E-value=0.00045 Score=52.71 Aligned_cols=74 Identities=11% Similarity=0.039 Sum_probs=61.0
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC-ccCCeeEEE
Q 023688 23 FTKIFVGGLAWET-Q----RDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP-VIDGRRANC 96 (278)
Q Consensus 23 ~~~lfVgnLp~~~-t----ee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~-~i~Gr~l~V 96 (278)
.++|+|.||+.++ + .++++++|..|+++......+.- .-..|.|.+.++|.+|-..+++ .+.|++|+|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 4689999999866 2 25778999999999887777543 2467999999999999999995 699999999
Q ss_pred EEccCC
Q 023688 97 NLASLG 102 (278)
Q Consensus 97 ~~A~~~ 102 (278)
-++.+.
T Consensus 79 YFgq~~ 84 (104)
T 1wey_A 79 YFAQTL 84 (104)
T ss_dssp ECCCCS
T ss_pred EecCCC
Confidence 999743
No 212
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.38 E-value=0.00049 Score=51.82 Aligned_cols=58 Identities=22% Similarity=0.337 Sum_probs=48.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~ 85 (278)
.....+.++| .+|+++...||.++|+.||.| .|+++.|. -|||.|.+++.|..|+..+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 3344556666 999999999999999999954 67788774 7999999999999999865
No 213
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.19 E-value=0.0024 Score=49.90 Aligned_cols=74 Identities=15% Similarity=0.187 Sum_probs=57.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCC-eeEEEE
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDG-RRANCN 97 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~G-r~l~V~ 97 (278)
+....+.|.|-+.+.+. .+.|.++|++||+|++.+... ...+-.|+|+++.+|++||.+....|++ ..|-|+
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~------~~NWihI~Y~s~~~A~rAL~kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN------TGNWMHIRYQSKLQARKALSKDGRIFGESIMIGVK 92 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS------SSSEEEEEESSHHHHHHHHTTTTCEETTTEECEEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC------CCCeEEEEeCCHHHHHHHHHhCCeEecCCEEEEEE
Confidence 44557789999999986 566777899999999887621 2348899999999999999997677774 566666
Q ss_pred Ec
Q 023688 98 LA 99 (278)
Q Consensus 98 ~A 99 (278)
..
T Consensus 93 p~ 94 (119)
T 1wwh_A 93 PC 94 (119)
T ss_dssp EC
T ss_pred EC
Confidence 64
No 214
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.99 E-value=0.00089 Score=50.55 Aligned_cols=53 Identities=23% Similarity=0.364 Sum_probs=45.5
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~ 85 (278)
+.++| ++|+++...||.++|+.|| -..|+++.|. -|||.|.+++.|..|+..+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i 59 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTS 59 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 34555 9999999999999999999 4578888774 7999999999999999854
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.89 E-value=0.0021 Score=47.84 Aligned_cols=63 Identities=10% Similarity=0.132 Sum_probs=51.9
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCc--ccEEEEEeCCHHHHHHHHhCCC
Q 023688 24 TKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRS--KGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 24 ~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~s--kG~aFV~F~~~e~A~~Al~~~~ 86 (278)
+||-|++||+.++|+++.+.+....++.-...+..+.+.+. -.-|+|.|.+.+++....+..+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhC
Confidence 58999999999999999999998888776666666544332 3569999999999999888877
No 216
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.31 E-value=0.004 Score=49.37 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=55.1
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEE-EEeeCC--------CCC-----CcccEEEEEeCCHHHHHHHHhCCCCc
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEA-VVITDK--------NTG-----RSKGYGFVTFKDPEAAMRACQNPSPV 88 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v-~i~~d~--------~tg-----~skG~aFV~F~~~e~A~~Al~~~~~~ 88 (278)
...|.|-+.|++... .+.+.|++||.|.+- .+.++. .+. ....+-.|+|+++.+|++||.+...+
T Consensus 7 e~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~i 85 (132)
T 3p3d_A 7 ELAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGAV 85 (132)
T ss_dssp -CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTCE
T ss_pred ceEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCeE
Confidence 446778899877754 555679999999762 221100 001 12457789999999999999998888
Q ss_pred cCCeeEEEEEccC
Q 023688 89 IDGRRANCNLASL 101 (278)
Q Consensus 89 i~Gr~l~V~~A~~ 101 (278)
|+|..|-|+..++
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888887653
No 217
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.85 E-value=0.0038 Score=59.62 Aligned_cols=57 Identities=16% Similarity=0.214 Sum_probs=43.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~ 85 (278)
.++|||. .+.++++++|.++|++||.|.++.+-.++ .-|+.|+|.+.+++.+++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhcc
Confidence 5799996 89999999999999999999998776543 259999999999999887654
No 218
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.51 E-value=0.014 Score=43.82 Aligned_cols=65 Identities=5% Similarity=0.041 Sum_probs=45.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCc--ccEEEEEeCCHHHHHHHHhCCCC
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRS--KGYGFVTFKDPEAAMRACQNPSP 87 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~s--kG~aFV~F~~~e~A~~Al~~~~~ 87 (278)
.-||-|+.||+.+||+++.+.++..=++.-...+..+.+.+. -.-|+|.|.+.+++....+..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g 75 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDG 75 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTT
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCC
Confidence 457999999999999998887766544432222322222221 24689999999999999988874
No 219
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.09 E-value=0.011 Score=47.30 Aligned_cols=33 Identities=15% Similarity=0.082 Sum_probs=28.1
Q ss_pred EEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 52 EAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 52 ~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
.++|+++. .+++||+||+|.+.++|++|++.++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~ 34 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYA 34 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhc
Confidence 46677775 4689999999999999999998876
No 220
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=92.83 E-value=0.046 Score=43.32 Aligned_cols=39 Identities=18% Similarity=0.099 Sum_probs=34.5
Q ss_pred CCcccEEEEEeCCHHHHHHHHhCC-C-CccCCeeEEEEEccC
Q 023688 62 GRSKGYGFVTFKDPEAAMRACQNP-S-PVIDGRRANCNLASL 101 (278)
Q Consensus 62 g~skG~aFV~F~~~e~A~~Al~~~-~-~~i~Gr~l~V~~A~~ 101 (278)
.+.+|+++|+|.+.++|++|++.+ + .+|+| .|.+.++..
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 567899999999999999999999 7 57999 999998764
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.24 E-value=0.35 Score=46.53 Aligned_cols=57 Identities=23% Similarity=0.343 Sum_probs=46.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 21 TTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 21 ~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
.....++|+ ++..+...+|.++|+.||.| +|+++.|. .|||.|.+.+.|..+++.++
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt-------~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT-------SAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS-------EEEEECSCHHHHHHHHHHHT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC-------eEEEEECCHHHHHHHHHHHH
Confidence 345667776 99999999999999999954 66666553 79999999999999998764
No 222
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=69.46 E-value=7.7 Score=26.65 Aligned_cols=67 Identities=10% Similarity=0.189 Sum_probs=38.2
Q ss_pred EEEEcC-CCCCCCHHHHHHHHhhCC-----CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC-CccCCeeEEEE
Q 023688 25 KIFVGG-LAWETQRDTMRRYFEQFG-----EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS-PVIDGRRANCN 97 (278)
Q Consensus 25 ~lfVgn-Lp~~~tee~L~~~F~~~G-----~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~-~~i~Gr~l~V~ 97 (278)
+|||.. --..+...+|..++..-+ .|-.|+|..+ |.||+... +.++++++.++ ..++|+++.|+
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECT-TCHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECH-HHHHHHHHHhccccCcCceEEEE
Confidence 455531 123456667777776544 3556666432 78988875 44677777777 46899999988
Q ss_pred Ecc
Q 023688 98 LAS 100 (278)
Q Consensus 98 ~A~ 100 (278)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 223
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=62.57 E-value=1.6 Score=32.66 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=0.0
Q ss_pred CCCCcEEEEcCCCCCCCHHH
Q 023688 20 DTTFTKIFVGGLAWETQRDT 39 (278)
Q Consensus 20 ~~~~~~lfVgnLp~~~tee~ 39 (278)
....++|||+||++++|++.
T Consensus 94 ~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 94 AKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp --------------------
T ss_pred cCCCCceEeCCCCCCccccc
Confidence 34456899999999999874
No 224
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=43.27 E-value=67 Score=22.98 Aligned_cols=47 Identities=11% Similarity=0.130 Sum_probs=32.4
Q ss_pred CHHHHHHHHh----hCC-CEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCC
Q 023688 36 QRDTMRRYFE----QFG-EILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSP 87 (278)
Q Consensus 36 tee~L~~~F~----~~G-~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~ 87 (278)
.|..+++.++ ..+ +|.++.++. ..+||-||+++..++...+|+...+
T Consensus 21 ~E~~V~~~L~~~~~~~~l~i~~v~vP~-----~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 21 QEKNIAGLMASRAEKEQLDVYSILASE-----SLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEEECT-----TSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEec-----ccCCEEEEEEecchhHHHHHHCCCC
Confidence 3544444443 223 366666553 3689999999999999999988775
No 225
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=38.37 E-value=78 Score=23.46 Aligned_cols=65 Identities=11% Similarity=0.102 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHH-hhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCeeEEEEEccCC
Q 023688 30 GLAWETQRDTMRRYF-EQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGRRANCNLASLG 102 (278)
Q Consensus 30 nLp~~~tee~L~~~F-~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr~l~V~~A~~~ 102 (278)
.++.-+.-++|.... +.||.-.++... +. -..|-..+.++..+||+.++..-.-+.|+|-+..++
T Consensus 23 ~f~RPv~f~eL~~Kv~~~fGq~ldL~y~-n~-------EllIpl~sQeDLDkaIellDrss~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 23 QFPRPVKLEDLRSKAKIAFGQSMDLHYT-NN-------ELVIPLTTQDDLDKAVELLDRSIHMKSLKILLVING 88 (103)
T ss_dssp EEESSCCHHHHHHHHHHHHSSCEEEEEC-SS-------SSCEECCSHHHHHHHHHHHHHCSSCCSEEEEEEECC
T ss_pred eccCCccHHHHHHHHHHHhCCeeeEEEe-cc-------eEEEeccCHHHHHHHHHHHccCCcccceEEEEecCC
Confidence 467778878877666 678988888776 32 246888999999999999874444455566555544
No 226
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=37.68 E-value=52 Score=21.45 Aligned_cols=58 Identities=10% Similarity=0.059 Sum_probs=42.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCC
Q 023688 22 TFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPS 86 (278)
Q Consensus 22 ~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~ 86 (278)
...++.|.++.=.--...|++.+.+ -.|..+.+-.. .+-+.|+|++.++..++|+...
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~------~~~~~v~~~~~~~i~~~i~~~G 62 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN------EAVVAGNKEDVDKYIKAVEAAG 62 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS------EEEEEEEGGGHHHHHHHHHHTT
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc------CCEEEEEECCHHHHHHHHHHcC
Confidence 3457889888766677889999988 88888877543 2356778876677777777654
No 227
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=31.40 E-value=7.3 Score=31.00 Aligned_cols=28 Identities=14% Similarity=0.224 Sum_probs=15.3
Q ss_pred HHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeC
Q 023688 38 DTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFK 73 (278)
Q Consensus 38 e~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~ 73 (278)
+|+.++|...|.|+.. . ..|||+||+-+
T Consensus 2 ~~~~~l~~~~G~Vkwf---n-----~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWF---N-----VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEE---E-----TTTTEEEEEEE
T ss_pred CcccccccceeEEEEE---E-----CCCCeeEEeeC
Confidence 4555666666655432 2 24789999876
No 228
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=29.59 E-value=1.6e+02 Score=23.84 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=37.2
Q ss_pred EEEEcCCCC-C--------CCHHHHHHHH--hhCCCEEEEEEeeCCCCCCcccEEEEEeC-CHHHHHHHHhC
Q 023688 25 KIFVGGLAW-E--------TQRDTMRRYF--EQFGEILEAVVITDKNTGRSKGYGFVTFK-DPEAAMRACQN 84 (278)
Q Consensus 25 ~lfVgnLp~-~--------~tee~L~~~F--~~~G~I~~v~i~~d~~tg~skG~aFV~F~-~~e~A~~Al~~ 84 (278)
.+.|-|++. . ....+|++.| +.|..++ |+.+.++ ....|++.|+|. +..-...|+..
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~--~Gh~g~aIv~F~~dw~Gf~~A~~f 82 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY--LGHSGTAIVEFNKDWNGLHNGLLF 82 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS--SBEEEEEEEECCSSHHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC--CCCceeEEEEecCChHHHHHHHHH
Confidence 345556665 1 3447899977 8998865 5555554 347899999997 44445555544
No 229
>2i9x_A Putative septation protein spovg; APC86317.1, staphylococcus epidermidis ATCC 12228, ST genomics, PSI-2, protein structure initiative; 1.80A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=27.59 E-value=79 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=21.1
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEeCC
Q 023688 49 EILEAVVITDKNTGRSKGYGFVTFKD 74 (278)
Q Consensus 49 ~I~~v~i~~d~~tg~skG~aFV~F~~ 74 (278)
+|++|+|..-...++-|+||=|+|++
T Consensus 5 ~iTdVri~~~~~~g~lka~asVt~dd 30 (87)
T 2i9x_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (87)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887665568889999999975
No 230
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=30.43 E-value=16 Score=27.39 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEE--EEEeCCHHHHHHHHhCCCCcc
Q 023688 30 GLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYG--FVTFKDPEAAMRACQNPSPVI 89 (278)
Q Consensus 30 nLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~a--FV~F~~~e~A~~Al~~~~~~i 89 (278)
-|-...++++|+++..+.+ +..+.+.+....|+. .|. +=.|.++++|.+|++.|...|
T Consensus 29 QL~a~~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~-WyvVlyG~Y~s~~~A~~A~~~LP~~l 88 (106)
T 2lfv_A 29 QLSSSSNYDNLNGWAKKEN-LKNYVVYETTRNGQP-WYVLVSGVYASKEEAKKAVSTLPADV 88 (106)
Confidence 3344455677888777775 445555443222322 222 237899999999999987544
No 231
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=24.07 E-value=36 Score=25.12 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=26.3
Q ss_pred CCCCHHHHHHHHhh-CCCEEEEEEeeCCC----CCCcccEEEEEeCCHHHHHH
Q 023688 33 WETQRDTMRRYFEQ-FGEILEAVVITDKN----TGRSKGYGFVTFKDPEAAMR 80 (278)
Q Consensus 33 ~~~tee~L~~~F~~-~G~I~~v~i~~d~~----tg~skG~aFV~F~~~e~A~~ 80 (278)
...+..+|++.+.+ |+.-.++.++..-. .+++.|||.| |++.+.|++
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~I-Yds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKI-YADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEE-ESHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46778888887754 44323444443332 3556677754 555555544
No 232
>2ia9_A Putative septation protein spovg; APC85465, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2; 3.00A {Bacillus subtilis} SCOP: d.366.1.1
Probab=23.73 E-value=98 Score=22.82 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=20.9
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEeCC
Q 023688 49 EILEAVVITDKNTGRSKGYGFVTFKD 74 (278)
Q Consensus 49 ~I~~v~i~~d~~tg~skG~aFV~F~~ 74 (278)
+|++|+|..-...++-|+||=|+|++
T Consensus 5 ~ITdVri~~i~~~gklkA~aSVt~dd 30 (100)
T 2ia9_A 5 EVTDVRLRRVNTDGRMRAIASITLDH 30 (100)
T ss_dssp CEEEEEEEECCSSSSEEEEEEEEETT
T ss_pred EEEEEEEEEcCCCCCEEEEEEEEECC
Confidence 57888887665558889999999975
No 233
>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Erwinia carotovora}
Probab=23.31 E-value=1.2e+02 Score=24.20 Aligned_cols=37 Identities=22% Similarity=0.308 Sum_probs=29.4
Q ss_pred CCHHHHHHHHhhCCCEE---EEEEeeCCCCCCcccEEEEE
Q 023688 35 TQRDTMRRYFEQFGEIL---EAVVITDKNTGRSKGYGFVT 71 (278)
Q Consensus 35 ~tee~L~~~F~~~G~I~---~v~i~~d~~tg~skG~aFV~ 71 (278)
.++++|+++=++.|++. ++.+..|..+|+.+.++|-+
T Consensus 3 ~t~~~L~~~A~~~gta~trVR~~~~~de~~G~~~v~gv~T 42 (157)
T 3mfb_A 3 LTPEKLLEAANKQGTVPSRVRYQWMEDEETGRLKAVGYHT 42 (157)
T ss_dssp CCHHHHHHHHHTTCEEEBSEEEEEEECTTTCCEEEEEEEC
T ss_pred cCHHHHHHHHHhCCcccccEEEEEEecCCCCcEEEEEEEC
Confidence 58999999999999874 56667775479999888863
No 234
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.16 E-value=40 Score=23.08 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=8.8
Q ss_pred ccEEEEEeCCH
Q 023688 65 KGYGFVTFKDP 75 (278)
Q Consensus 65 kG~aFV~F~~~ 75 (278)
+..|||.|+|.
T Consensus 37 ~~~ClV~FeD~ 47 (68)
T 2e5p_A 37 REVCLVQFEDD 47 (68)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 56899999863
No 235
>2i9z_A Putative septation protein spovg; APC86317, staphylococcus epidermidis ATCC 12228, STRU genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus epidermidis} SCOP: d.366.1.1
Probab=23.16 E-value=1e+02 Score=22.92 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=20.7
Q ss_pred CEEEEEEeeCCCCCCcccEEEEEeCC
Q 023688 49 EILEAVVITDKNTGRSKGYGFVTFKD 74 (278)
Q Consensus 49 ~I~~v~i~~d~~tg~skG~aFV~F~~ 74 (278)
+|++|+|..-...++-|+||=|+|++
T Consensus 5 ~iTdVri~~i~~~gklkA~aSVt~dd 30 (105)
T 2i9z_A 5 KVTDVRLRKIQTDGRMKALVSITLDE 30 (105)
T ss_dssp CEEEEEEEECCSCSSEEEEEEEEETT
T ss_pred EEEEEEEEEeCCCCCEEEEEEEEECC
Confidence 57788877665568889999999975
No 236
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=22.57 E-value=2.3e+02 Score=20.79 Aligned_cols=47 Identities=11% Similarity=0.139 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHhh-CCC---EEEE-EEeeCCCCCCcccEEEEEeCCHHHHHH
Q 023688 33 WETQRDTMRRYFEQ-FGE---ILEA-VVITDKNTGRSKGYGFVTFKDPEAAMR 80 (278)
Q Consensus 33 ~~~tee~L~~~F~~-~G~---I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~ 80 (278)
...+..+|++.+.+ |+. +..| .+...-..+++.|||.| |++.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 57788888888854 332 2222 23334445677788865 777766654
No 237
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=21.91 E-value=2.4e+02 Score=20.67 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHhh-CCC---EEEE-EEeeCCCCCCcccEEEEEeCCHHHHHHH
Q 023688 33 WETQRDTMRRYFEQ-FGE---ILEA-VVITDKNTGRSKGYGFVTFKDPEAAMRA 81 (278)
Q Consensus 33 ~~~tee~L~~~F~~-~G~---I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~A 81 (278)
..++..+|++.+.+ |+. +.-| .+...-..+++.|||.| |++.+.|++.
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~ 80 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQV 80 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhh
Confidence 56788889888854 442 2222 23333344677777755 7777766554
No 238
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=21.81 E-value=53 Score=32.16 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=39.5
Q ss_pred CCCCCCHHHHHHHHh----hCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC
Q 023688 31 LAWETQRDTMRRYFE----QFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP 85 (278)
Q Consensus 31 Lp~~~tee~L~~~F~----~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~ 85 (278)
.+++.+--+|+.+|- .+|-|+++.|...+. -+.+...++.|.+.+++.+++..+
T Consensus 351 ~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~-P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 351 GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPT-PEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEEC-CSEEEEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCcCHHHHhccCCCcCcceeeeeeeeccC-CccccccccccCCchhhhhhHHHH
Confidence 444445557888882 578899988766543 445668899999999999888654
No 239
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=21.47 E-value=89 Score=28.31 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=39.9
Q ss_pred EEEcCCCCCC----CHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCCCCccCCe
Q 023688 26 IFVGGLAWET----QRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNPSPVIDGR 92 (278)
Q Consensus 26 lfVgnLp~~~----tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~~~~i~Gr 92 (278)
-+||||..-. -...+.++.++||.|..+.+.. --+|...+.+.++.++......+.++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g~---------~~~vvv~~p~~~k~il~~~~~~f~~r 78 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGT---------KTTVIVGHHQLAKEVLIKKGKDFSGR 78 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEETT---------EEEEEECSHHHHHHHHTTTTTTTBBC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeCC---------CCEEEECCHHHHHHHHHhCcHhhCCC
Confidence 4688876432 2356778888999998887632 23677889999999987654444443
No 240
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=21.44 E-value=2.2e+02 Score=21.08 Aligned_cols=47 Identities=13% Similarity=0.124 Sum_probs=28.0
Q ss_pred CCCCHHHHHHHHhh-CCC---EEEE-EEeeCCCCCCcccEEEEEeCCHHHHHH
Q 023688 33 WETQRDTMRRYFEQ-FGE---ILEA-VVITDKNTGRSKGYGFVTFKDPEAAMR 80 (278)
Q Consensus 33 ~~~tee~L~~~F~~-~G~---I~~v-~i~~d~~tg~skG~aFV~F~~~e~A~~ 80 (278)
...+..+|++.+.+ |+. +.-| .+...-..+++.|||.| |++.+.|++
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46778888887754 443 2222 22333334677788865 777777665
No 241
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=21.24 E-value=2.5e+02 Score=20.61 Aligned_cols=60 Identities=8% Similarity=0.013 Sum_probs=37.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHHHhh-------CCCEEEEEEeeCCCCCCcccE--EE-EEeCCHHHHHHHHh
Q 023688 23 FTKIFVGGLAWETQRDTMRRYFEQ-------FGEILEAVVITDKNTGRSKGY--GF-VTFKDPEAAMRACQ 83 (278)
Q Consensus 23 ~~~lfVgnLp~~~tee~L~~~F~~-------~G~I~~v~i~~d~~tg~skG~--aF-V~F~~~e~A~~Al~ 83 (278)
.+.|.+-.|..++++++++++.+. .-.|+.+.+-.+.. .+.++| +| ++|++.++.+.-..
T Consensus 22 I~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~s-~~~~g~d~~l~~~F~s~edl~~Y~~ 91 (116)
T 3bgu_A 22 IRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADLG-LAAGNYDFAVVADLDGEDGFRAYQD 91 (116)
T ss_dssp EEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECCS-CSTTCCSEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCCC-CCCCCeeEEEEEEECCHHHHHHHhc
Confidence 444555588889888776655543 34677777777653 444443 44 58888887765443
No 242
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=21.15 E-value=2.4e+02 Score=20.45 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=51.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHHHhhCCCEEEEEEeeCCCCCCcccEEEEEeCCHHHHHHHHhCC-CC-------ccC
Q 023688 19 NDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACQNP-SP-------VID 90 (278)
Q Consensus 19 ~~~~~~~lfVgnLp~~~tee~L~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~~~e~A~~Al~~~-~~-------~i~ 90 (278)
.-...+-|-|-|+|..+-..++.-.....|--.-|..+. |-+.|.|.+.++.+-|+..+ ++ +|.
T Consensus 8 sikqnclikiinipqgtlkaevvlavrhlgyefycdyid--------gqamirfqnsdeqrlaiqkllnhnnnklqieir 79 (129)
T 4eyt_A 8 SIKQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID--------GQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIR 79 (129)
T ss_dssp --CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS--------SCEEEEESSHHHHHHHHHHHEETTTTEEEEEET
T ss_pred hhhhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec--------CeeEEEecCChHHHHHHHHHHhcCCCEEEEEEc
Confidence 345667788889999999888877777777666666653 46899999999988888753 22 466
Q ss_pred CeeEEEEE
Q 023688 91 GRRANCNL 98 (278)
Q Consensus 91 Gr~l~V~~ 98 (278)
|..+.|--
T Consensus 80 gqicdvis 87 (129)
T 4eyt_A 80 GQICDVIS 87 (129)
T ss_dssp TEEEEEEC
T ss_pred ceeeeeee
Confidence 76665543
No 243
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=20.98 E-value=2e+02 Score=25.07 Aligned_cols=47 Identities=17% Similarity=0.415 Sum_probs=36.9
Q ss_pred cEEEEcCCCC-CCCHHHHHHHHhhC-------CCEEEEEEeeCCCCCCcccEEEE
Q 023688 24 TKIFVGGLAW-ETQRDTMRRYFEQF-------GEILEAVVITDKNTGRSKGYGFV 70 (278)
Q Consensus 24 ~~lfVgnLp~-~~tee~L~~~F~~~-------G~I~~v~i~~d~~tg~skG~aFV 70 (278)
+.|=|..+.. .++||+|...+++| ..+-++.+...+.+|++--|-|.
T Consensus 167 TIl~v~~~~~~~~deE~l~~~l~k~~~P~glN~~~f~l~ltnrRKSGRsl~y~f~ 221 (270)
T 4a8j_B 167 TIVDIDVVLTGTLDTEEVSELLNEFRIPRGLNNDIFQLRLVNKRKSGRSLEYDFI 221 (270)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHTTCCCSSCSCSEEEEEEEEECTTSCEEEEEEE
T ss_pred heEEEecCCCCCccHHHHHHHhhheecccccCCCeEEEEEEeccccCcceEEEEE
Confidence 3455666654 77999999999987 36778888888888999888886
No 244
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=20.08 E-value=50 Score=23.25 Aligned_cols=11 Identities=27% Similarity=0.498 Sum_probs=8.8
Q ss_pred ccEEEEEeCCH
Q 023688 65 KGYGFVTFKDP 75 (278)
Q Consensus 65 kG~aFV~F~~~ 75 (278)
+..|||.|+|.
T Consensus 54 ~e~ClV~F~D~ 64 (79)
T 2m0o_A 54 REVCLVQFEDD 64 (79)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEEEcCC
Confidence 56899999874
Done!