Query 023690
Match_columns 278
No_of_seqs 79 out of 81
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 05:55:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12718 Tropomyosin_1: Tropom 96.9 0.026 5.6E-07 48.3 12.3 78 35-113 6-83 (143)
2 PF08614 ATG16: Autophagy prot 96.8 0.027 5.9E-07 49.5 12.5 77 41-117 93-172 (194)
3 PRK11637 AmiB activator; Provi 96.8 0.02 4.4E-07 55.5 12.5 109 11-128 17-135 (428)
4 PRK10884 SH3 domain-containing 96.7 0.024 5.2E-07 51.3 11.5 69 40-115 90-158 (206)
5 PF06637 PV-1: PV-1 protein (P 96.6 0.031 6.6E-07 55.6 12.2 64 52-115 287-375 (442)
6 COG2433 Uncharacterized conser 96.6 0.036 7.8E-07 57.7 12.9 85 38-122 424-514 (652)
7 PRK11637 AmiB activator; Provi 96.5 0.052 1.1E-06 52.7 13.1 68 43-114 68-135 (428)
8 PF08614 ATG16: Autophagy prot 96.4 0.04 8.6E-07 48.5 10.2 72 40-115 120-192 (194)
9 PF12329 TMF_DNA_bd: TATA elem 96.3 0.061 1.3E-06 41.5 9.6 65 54-118 2-69 (74)
10 PF11559 ADIP: Afadin- and alp 96.1 0.12 2.5E-06 43.5 11.5 30 52-81 75-104 (151)
11 PRK09039 hypothetical protein; 96.1 0.11 2.3E-06 50.1 12.4 88 40-127 113-204 (343)
12 PF10473 CENP-F_leu_zip: Leuci 96.0 0.39 8.4E-06 41.6 14.3 96 29-128 5-112 (140)
13 COG1579 Zn-ribbon protein, pos 95.6 0.21 4.6E-06 46.6 11.9 35 47-81 35-69 (239)
14 COG1579 Zn-ribbon protein, pos 95.5 0.42 9.2E-06 44.6 13.4 83 32-115 48-143 (239)
15 PF11559 ADIP: Afadin- and alp 95.5 0.21 4.6E-06 42.0 10.5 68 46-117 55-122 (151)
16 PHA02562 46 endonuclease subun 95.4 0.39 8.5E-06 47.2 13.6 97 19-115 142-246 (562)
17 PF10186 Atg14: UV radiation r 95.4 0.74 1.6E-05 41.2 14.2 86 42-127 62-154 (302)
18 PF05700 BCAS2: Breast carcino 95.2 0.98 2.1E-05 40.8 14.5 89 30-118 123-211 (221)
19 PF04156 IncA: IncA protein; 95.1 0.7 1.5E-05 39.8 12.8 80 40-119 85-167 (191)
20 PRK03918 chromosome segregatio 95.1 0.77 1.7E-05 47.8 15.1 94 21-114 154-263 (880)
21 KOG3990 Uncharacterized conser 94.9 0.11 2.3E-06 49.5 7.8 34 45-78 227-260 (305)
22 TIGR03185 DNA_S_dndD DNA sulfu 94.9 0.55 1.2E-05 48.2 13.5 44 38-81 393-438 (650)
23 PF03148 Tektin: Tektin family 94.8 1.3 2.7E-05 43.3 14.9 99 28-126 236-354 (384)
24 PRK02224 chromosome segregatio 94.7 0.93 2E-05 47.4 14.8 6 27-32 164-169 (880)
25 PRK10884 SH3 domain-containing 94.6 0.49 1.1E-05 43.0 11.0 68 39-113 96-163 (206)
26 KOG0288 WD40 repeat protein Ti 94.5 0.46 1E-05 47.9 11.5 60 66-129 43-102 (459)
27 PF09755 DUF2046: Uncharacteri 94.5 0.9 2E-05 44.1 13.1 86 39-128 109-203 (310)
28 PF08647 BRE1: BRE1 E3 ubiquit 94.5 1.2 2.7E-05 35.6 11.9 79 45-127 5-90 (96)
29 PF09789 DUF2353: Uncharacteri 94.5 0.43 9.3E-06 46.3 10.9 74 38-115 88-180 (319)
30 PF12718 Tropomyosin_1: Tropom 94.4 0.88 1.9E-05 39.0 11.6 79 38-116 37-128 (143)
31 KOG0977 Nuclear envelope prote 94.4 0.75 1.6E-05 47.6 13.0 81 31-111 95-191 (546)
32 PHA02562 46 endonuclease subun 94.3 0.56 1.2E-05 46.1 11.5 35 43-77 337-371 (562)
33 PF09726 Macoilin: Transmembra 94.2 0.47 1E-05 50.0 11.4 41 36-76 538-578 (697)
34 PF04111 APG6: Autophagy prote 94.2 0.87 1.9E-05 43.4 12.2 78 39-116 46-133 (314)
35 PF14197 Cep57_CLD_2: Centroso 94.1 0.82 1.8E-05 35.1 9.6 60 47-106 2-64 (69)
36 PF08172 CASP_C: CASP C termin 94.0 0.59 1.3E-05 43.5 10.4 84 46-129 2-139 (248)
37 TIGR02169 SMC_prok_A chromosom 93.8 1.1 2.3E-05 47.3 13.1 26 89-114 896-921 (1164)
38 KOG0994 Extracellular matrix g 93.8 1.6 3.4E-05 49.3 14.4 111 14-124 1497-1637(1758)
39 COG4026 Uncharacterized protei 93.7 1.5 3.3E-05 41.5 12.5 84 29-116 104-197 (290)
40 PF04156 IncA: IncA protein; 93.7 1.7 3.7E-05 37.4 12.1 20 96-115 130-149 (191)
41 PF11180 DUF2968: Protein of u 93.7 1.2 2.7E-05 40.6 11.6 75 43-117 105-182 (192)
42 KOG2685 Cystoskeletal protein 93.7 2.7 5.9E-05 42.3 14.9 100 26-125 261-380 (421)
43 PF13870 DUF4201: Domain of un 93.7 2.8 6.1E-05 36.2 13.4 51 25-79 42-92 (177)
44 KOG0161 Myosin class II heavy 93.6 1.3 2.9E-05 51.6 14.3 91 38-128 1317-1418(1930)
45 PF13851 GAS: Growth-arrest sp 93.6 3.2 6.9E-05 37.3 14.0 79 38-116 43-127 (201)
46 PF00261 Tropomyosin: Tropomyo 93.6 1.2 2.7E-05 40.3 11.5 54 28-81 99-158 (237)
47 PF15619 Lebercilin: Ciliary p 93.4 0.7 1.5E-05 41.5 9.6 61 46-106 121-188 (194)
48 PF08317 Spc7: Spc7 kinetochor 93.3 1.8 4E-05 41.0 12.6 11 46-56 187-197 (325)
49 COG4942 Membrane-bound metallo 93.2 0.96 2.1E-05 45.5 11.0 67 43-109 38-107 (420)
50 KOG0804 Cytoplasmic Zn-finger 93.2 1.7 3.7E-05 44.3 12.7 85 28-116 328-430 (493)
51 PF07106 TBPIP: Tat binding pr 93.1 1.2 2.5E-05 38.2 10.0 61 47-109 76-136 (169)
52 PF15070 GOLGA2L5: Putative go 93.0 2.8 6.1E-05 43.9 14.5 84 33-116 19-114 (617)
53 PF04899 MbeD_MobD: MbeD/MobD 92.9 1.8 4E-05 33.5 9.8 35 82-116 35-69 (70)
54 PF10186 Atg14: UV radiation r 92.9 5.2 0.00011 35.8 14.3 41 40-80 67-107 (302)
55 PF07888 CALCOCO1: Calcium bin 92.8 2.7 5.8E-05 43.6 13.8 63 16-78 129-199 (546)
56 PF12325 TMF_TATA_bd: TATA ele 92.8 2.4 5.1E-05 35.8 11.2 19 105-123 98-116 (120)
57 PF05266 DUF724: Protein of un 92.8 2.6 5.6E-05 37.9 12.1 99 14-116 55-179 (190)
58 TIGR03017 EpsF chain length de 92.7 1.3 2.8E-05 42.6 10.9 42 40-81 258-299 (444)
59 PRK03918 chromosome segregatio 92.7 2 4.4E-05 44.7 13.0 6 68-73 644-649 (880)
60 smart00787 Spc7 Spc7 kinetocho 92.7 2 4.3E-05 41.3 12.0 51 52-102 206-259 (312)
61 PF00038 Filament: Intermediat 92.7 4.6 0.0001 37.1 14.0 72 51-122 217-295 (312)
62 KOG0994 Extracellular matrix g 92.6 0.66 1.4E-05 52.0 9.5 79 38-116 1196-1294(1758)
63 PF08317 Spc7: Spc7 kinetochor 92.6 3.2 7E-05 39.4 13.2 89 41-129 154-263 (325)
64 KOG3433 Protein involved in me 92.6 1 2.2E-05 41.3 9.3 80 39-129 77-156 (203)
65 PF13851 GAS: Growth-arrest sp 92.4 2.7 5.9E-05 37.7 11.9 85 40-124 59-149 (201)
66 PF10146 zf-C4H2: Zinc finger- 92.4 1.9 4.2E-05 39.9 11.1 41 92-132 70-111 (230)
67 PF04012 PspA_IM30: PspA/IM30 92.4 7.4 0.00016 34.4 15.0 100 24-126 22-128 (221)
68 PF05911 DUF869: Plant protein 92.4 1.8 3.9E-05 46.5 12.2 91 35-126 10-115 (769)
69 PRK02224 chromosome segregatio 92.4 2.8 6E-05 44.0 13.5 13 25-37 147-159 (880)
70 PF12325 TMF_TATA_bd: TATA ele 92.3 6 0.00013 33.4 13.0 74 52-129 18-94 (120)
71 PF03962 Mnd1: Mnd1 family; I 92.2 2.5 5.5E-05 37.7 11.3 30 47-76 66-95 (188)
72 TIGR03752 conj_TIGR03752 integ 92.2 1.4 3.1E-05 44.9 10.7 69 40-108 63-135 (472)
73 PF09744 Jnk-SapK_ap_N: JNK_SA 92.1 4 8.6E-05 35.9 12.2 91 28-119 36-126 (158)
74 PF07888 CALCOCO1: Calcium bin 92.1 2.7 6E-05 43.6 12.8 39 43-81 143-181 (546)
75 KOG0995 Centromere-associated 92.0 2.1 4.5E-05 44.6 11.8 41 40-80 284-324 (581)
76 KOG1103 Predicted coiled-coil 91.9 6.7 0.00015 39.6 14.8 76 42-120 219-300 (561)
77 PF09726 Macoilin: Transmembra 91.9 0.86 1.9E-05 48.1 9.1 56 47-102 422-480 (697)
78 PF06810 Phage_GP20: Phage min 91.8 2 4.3E-05 37.3 9.9 33 40-72 17-49 (155)
79 smart00787 Spc7 Spc7 kinetocho 91.7 3.8 8.2E-05 39.4 12.5 77 41-128 177-257 (312)
80 PF02050 FliJ: Flagellar FliJ 91.6 4.8 0.0001 30.6 13.1 84 38-125 14-102 (123)
81 TIGR03185 DNA_S_dndD DNA sulfu 91.5 5.3 0.00012 41.1 14.2 68 14-81 171-247 (650)
82 TIGR01843 type_I_hlyD type I s 91.5 7.5 0.00016 36.4 14.1 43 38-80 139-181 (423)
83 PF10224 DUF2205: Predicted co 91.5 0.99 2.2E-05 35.8 7.0 40 72-111 24-66 (80)
84 KOG4010 Coiled-coil protein TP 91.3 0.36 7.9E-06 44.2 5.0 35 40-74 48-82 (208)
85 KOG0161 Myosin class II heavy 91.3 2.6 5.7E-05 49.3 12.8 89 28-116 1696-1792(1930)
86 PF10168 Nup88: Nuclear pore c 91.2 2 4.3E-05 45.6 11.0 65 38-106 560-624 (717)
87 PF10146 zf-C4H2: Zinc finger- 91.2 8.8 0.00019 35.6 13.9 21 61-81 47-70 (230)
88 PF11932 DUF3450: Protein of u 91.1 8.8 0.00019 34.9 13.8 41 41-81 40-80 (251)
89 PF11932 DUF3450: Protein of u 91.1 8.7 0.00019 35.0 13.8 50 29-79 22-71 (251)
90 TIGR03007 pepcterm_ChnLen poly 91.0 2.6 5.6E-05 41.3 11.0 41 40-80 251-291 (498)
91 PF13870 DUF4201: Domain of un 91.0 5.8 0.00013 34.2 12.0 79 46-124 45-126 (177)
92 KOG0249 LAR-interacting protei 90.9 3.5 7.6E-05 44.5 12.4 73 52-124 165-251 (916)
93 TIGR02231 conserved hypothetic 90.9 2.6 5.6E-05 42.2 11.0 78 40-117 68-166 (525)
94 PF00769 ERM: Ezrin/radixin/mo 90.9 3.9 8.4E-05 37.8 11.4 78 40-117 9-96 (246)
95 PF06005 DUF904: Protein of un 90.8 4.4 9.6E-05 31.4 9.9 23 86-108 43-65 (72)
96 PRK10361 DNA recombination pro 90.7 9.5 0.0002 39.1 14.9 45 82-126 99-160 (475)
97 TIGR01005 eps_transp_fam exopo 90.7 2 4.3E-05 44.6 10.4 30 102-131 375-404 (754)
98 PF12777 MT: Microtubule-bindi 90.6 1.5 3.2E-05 41.9 8.7 57 43-103 221-277 (344)
99 COG1196 Smc Chromosome segrega 90.5 5.9 0.00013 43.7 14.1 40 85-124 442-481 (1163)
100 KOG0963 Transcription factor/C 90.5 2.9 6.3E-05 44.0 11.2 96 29-124 227-338 (629)
101 KOG0250 DNA repair protein RAD 90.4 3.1 6.6E-05 46.2 11.8 35 92-126 390-424 (1074)
102 KOG0995 Centromere-associated 90.4 5 0.00011 42.0 12.7 93 39-131 255-367 (581)
103 PF13863 DUF4200: Domain of un 90.4 8.2 0.00018 31.1 13.5 35 88-122 80-114 (126)
104 PF09730 BicD: Microtubule-ass 90.4 3.5 7.6E-05 44.0 11.9 91 40-131 31-138 (717)
105 PF05911 DUF869: Plant protein 90.2 3.1 6.6E-05 44.7 11.4 60 42-101 98-160 (769)
106 COG4026 Uncharacterized protei 90.1 2.4 5.1E-05 40.3 9.3 76 40-119 139-214 (290)
107 PF14662 CCDC155: Coiled-coil 90.1 4.1 9E-05 37.3 10.6 63 46-108 63-128 (193)
108 PF15290 Syntaphilin: Golgi-lo 90.1 4.4 9.5E-05 39.3 11.3 90 26-120 62-166 (305)
109 TIGR00606 rad50 rad50. This fa 90.1 3.4 7.4E-05 46.0 12.1 76 40-115 1002-1087(1311)
110 COG1196 Smc Chromosome segrega 90.1 4.7 0.0001 44.5 13.0 24 92-115 887-910 (1163)
111 COG4942 Membrane-bound metallo 90.1 4.9 0.00011 40.6 12.0 60 52-115 40-99 (420)
112 PF10205 KLRAQ: Predicted coil 90.1 5.8 0.00012 33.0 10.5 61 48-113 3-64 (102)
113 PF11544 Spc42p: Spindle pole 90.0 4.3 9.4E-05 32.2 9.3 52 48-103 3-54 (76)
114 PF14197 Cep57_CLD_2: Centroso 89.9 2.7 5.9E-05 32.3 8.0 55 63-121 4-62 (69)
115 KOG1962 B-cell receptor-associ 89.7 1.8 3.9E-05 40.1 8.1 71 41-115 119-198 (216)
116 PF09798 LCD1: DNA damage chec 89.7 1.6 3.4E-05 46.2 8.6 56 55-110 2-61 (654)
117 TIGR01843 type_I_hlyD type I s 89.6 18 0.00039 33.9 15.4 42 40-81 134-175 (423)
118 PF10205 KLRAQ: Predicted coil 89.6 5.5 0.00012 33.2 10.1 74 41-118 3-76 (102)
119 PRK02119 hypothetical protein; 89.6 2.3 5E-05 32.8 7.4 15 66-80 4-18 (73)
120 KOG0980 Actin-binding protein 89.3 8.6 0.00019 42.3 13.8 42 84-125 454-506 (980)
121 PRK12704 phosphodiesterase; Pr 89.3 12 0.00025 38.4 14.2 13 117-129 154-166 (520)
122 PF10779 XhlA: Haemolysin XhlA 89.1 2.1 4.6E-05 32.4 6.8 48 67-118 2-49 (71)
123 COG5185 HEC1 Protein involved 89.1 4.8 0.0001 41.7 11.3 63 50-112 330-398 (622)
124 TIGR00606 rad50 rad50. This fa 89.0 8 0.00017 43.2 13.8 43 39-81 884-926 (1311)
125 KOG4674 Uncharacterized conser 88.9 3.1 6.6E-05 48.5 10.8 48 46-93 1310-1357(1822)
126 PF10174 Cast: RIM-binding pro 88.9 6.7 0.00015 42.3 12.8 72 40-111 333-414 (775)
127 PF04201 TPD52: Tumour protein 88.9 6.8 0.00015 35.0 10.8 34 40-73 33-66 (162)
128 KOG4398 Predicted coiled-coil 88.9 2.7 5.9E-05 40.9 9.0 83 41-127 3-89 (359)
129 TIGR03319 YmdA_YtgF conserved 88.9 13 0.00028 38.1 14.2 12 118-129 149-160 (514)
130 PF05377 FlaC_arch: Flagella a 88.8 1.9 4.1E-05 32.3 6.2 39 66-108 2-40 (55)
131 PF11068 YlqD: YlqD protein; 88.8 4.8 0.0001 34.5 9.5 63 62-128 18-85 (131)
132 PF10805 DUF2730: Protein of u 88.8 2.2 4.7E-05 34.8 7.2 59 51-113 36-96 (106)
133 TIGR03017 EpsF chain length de 88.6 8.1 0.00018 37.2 12.1 86 44-130 283-369 (444)
134 PRK09039 hypothetical protein; 88.5 16 0.00035 35.4 14.0 6 188-193 265-270 (343)
135 TIGR03007 pepcterm_ChnLen poly 88.4 6.5 0.00014 38.6 11.4 88 43-130 275-382 (498)
136 PRK04406 hypothetical protein; 88.4 3.5 7.7E-05 32.1 7.8 16 66-81 6-21 (75)
137 PF14362 DUF4407: Domain of un 88.3 21 0.00046 33.1 14.6 83 48-130 133-238 (301)
138 PF15035 Rootletin: Ciliary ro 88.3 3.8 8.3E-05 36.6 9.0 21 95-115 94-114 (182)
139 PF05667 DUF812: Protein of un 88.2 5.3 0.00012 41.7 11.2 41 41-81 340-380 (594)
140 PF04102 SlyX: SlyX; InterPro 88.2 3.4 7.3E-05 31.3 7.4 25 104-128 26-50 (69)
141 PF15619 Lebercilin: Ciliary p 88.2 7.7 0.00017 35.0 10.9 79 38-116 56-145 (194)
142 PF04111 APG6: Autophagy prote 88.1 12 0.00026 35.8 12.7 40 42-81 42-81 (314)
143 COG3883 Uncharacterized protei 88.0 4.4 9.5E-05 38.6 9.6 57 59-115 33-92 (265)
144 TIGR01005 eps_transp_fam exopo 88.0 5.4 0.00012 41.4 11.1 36 45-80 297-332 (754)
145 COG2433 Uncharacterized conser 88.0 9 0.00019 40.6 12.6 86 40-126 419-508 (652)
146 KOG0288 WD40 repeat protein Ti 87.9 9.2 0.0002 38.9 12.2 36 46-81 37-72 (459)
147 PRK02793 phi X174 lysis protei 87.7 3.6 7.8E-05 31.6 7.4 23 86-108 26-48 (72)
148 PF05529 Bap31: B-cell recepto 87.6 2.3 4.9E-05 37.1 7.0 68 40-111 122-190 (192)
149 PRK13729 conjugal transfer pil 87.6 2.4 5.1E-05 43.4 8.0 22 59-80 71-92 (475)
150 PF08826 DMPK_coil: DMPK coile 87.6 9 0.0002 29.0 9.3 56 46-109 4-59 (61)
151 KOG2129 Uncharacterized conser 87.6 17 0.00037 37.4 13.9 85 37-124 202-317 (552)
152 PF11594 Med28: Mediator compl 87.5 4.5 9.7E-05 33.9 8.3 52 30-81 14-73 (106)
153 PF10805 DUF2730: Protein of u 87.5 5.6 0.00012 32.4 8.8 29 88-116 64-92 (106)
154 KOG4673 Transcription factor T 87.4 5.3 0.00012 43.1 10.7 37 44-80 496-532 (961)
155 PF09755 DUF2046: Uncharacteri 87.4 21 0.00045 34.9 13.9 87 36-125 178-294 (310)
156 PF10168 Nup88: Nuclear pore c 87.3 5.3 0.00011 42.5 10.7 52 53-104 546-601 (717)
157 PF10473 CENP-F_leu_zip: Leuci 87.3 11 0.00024 32.7 10.9 69 42-113 65-136 (140)
158 TIGR00634 recN DNA repair prot 87.2 4.2 9.1E-05 41.2 9.6 47 83-129 340-391 (563)
159 PRK04863 mukB cell division pr 87.2 16 0.00034 42.2 14.9 29 90-118 398-426 (1486)
160 PF06156 DUF972: Protein of un 87.2 5.1 0.00011 33.1 8.5 41 66-110 17-57 (107)
161 PF02601 Exonuc_VII_L: Exonucl 87.2 18 0.00039 33.7 13.1 54 28-81 150-208 (319)
162 PF10174 Cast: RIM-binding pro 87.1 7.6 0.00016 41.9 11.8 41 33-80 277-317 (775)
163 PF10211 Ax_dynein_light: Axon 87.0 5.7 0.00012 35.4 9.3 24 94-117 161-184 (189)
164 PF06005 DUF904: Protein of un 86.9 12 0.00025 29.1 9.8 19 91-109 34-52 (72)
165 PF14817 HAUS5: HAUS augmin-li 86.9 11 0.00024 39.8 12.7 77 44-120 80-166 (632)
166 TIGR01000 bacteriocin_acc bact 86.6 9.1 0.0002 37.6 11.4 26 44-69 237-262 (457)
167 KOG2991 Splicing regulator [RN 86.6 4 8.7E-05 39.4 8.5 71 36-106 229-309 (330)
168 COG3883 Uncharacterized protei 86.6 7.7 0.00017 37.0 10.4 58 48-109 43-100 (265)
169 PF13747 DUF4164: Domain of un 86.6 8.1 0.00018 30.8 9.1 26 82-107 53-78 (89)
170 PRK00106 hypothetical protein; 86.3 22 0.00047 36.9 14.2 14 117-130 169-182 (535)
171 PF05384 DegS: Sensor protein 86.3 18 0.00039 31.9 11.9 79 40-119 45-128 (159)
172 KOG4643 Uncharacterized coiled 86.3 5.5 0.00012 44.4 10.3 68 38-109 172-239 (1195)
173 PF03962 Mnd1: Mnd1 family; I 86.0 5.5 0.00012 35.5 8.7 30 40-69 66-95 (188)
174 KOG0244 Kinesin-like protein [ 85.9 4.1 8.9E-05 44.6 9.1 94 38-132 511-608 (913)
175 PRK10803 tol-pal system protei 85.8 6.5 0.00014 36.5 9.4 63 49-115 39-101 (263)
176 COG1322 Predicted nuclease of 85.8 21 0.00045 36.3 13.6 15 115-129 141-155 (448)
177 PF13874 Nup54: Nucleoporin co 85.7 6.2 0.00013 33.4 8.5 33 38-70 32-64 (141)
178 KOG0971 Microtubule-associated 85.7 3.6 7.8E-05 45.4 8.6 30 44-73 411-440 (1243)
179 PF12329 TMF_DNA_bd: TATA elem 85.7 5.7 0.00012 30.7 7.5 35 84-118 14-48 (74)
180 KOG0962 DNA repair protein RAD 85.7 8.6 0.00019 43.7 11.6 81 38-124 1010-1096(1294)
181 PRK00295 hypothetical protein; 85.6 7 0.00015 29.8 7.9 40 66-109 7-46 (68)
182 TIGR00634 recN DNA repair prot 85.5 2.8 6E-05 42.5 7.4 57 25-81 142-199 (563)
183 PF06818 Fez1: Fez1; InterPro 85.5 7.5 0.00016 35.8 9.4 67 50-116 31-100 (202)
184 PF04100 Vps53_N: Vps53-like, 85.5 9.4 0.0002 37.5 10.7 43 10-56 2-45 (383)
185 KOG4005 Transcription factor X 85.3 11 0.00024 36.1 10.7 80 42-125 58-144 (292)
186 PF04849 HAP1_N: HAP1 N-termin 85.2 19 0.00041 35.1 12.5 86 30-115 154-253 (306)
187 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.2 14 0.00031 30.7 10.3 30 52-81 61-90 (132)
188 PF08700 Vps51: Vps51/Vps67; 85.2 14 0.0003 27.8 9.9 61 51-115 23-84 (87)
189 PF06120 Phage_HK97_TLTM: Tail 85.1 22 0.00047 34.5 12.7 75 48-122 72-164 (301)
190 PF09486 HrpB7: Bacterial type 85.1 13 0.00028 32.9 10.4 47 35-81 78-124 (158)
191 TIGR02559 HrpB7 type III secre 85.1 15 0.00032 32.8 10.8 63 38-100 81-149 (158)
192 PRK12705 hypothetical protein; 85.1 13 0.00029 38.2 11.9 14 118-131 143-156 (508)
193 KOG4687 Uncharacterized coiled 85.0 4.1 8.8E-05 39.8 7.8 78 50-128 30-115 (389)
194 PF10158 LOH1CR12: Tumour supp 85.0 17 0.00037 31.1 10.8 59 17-75 19-88 (131)
195 KOG1962 B-cell receptor-associ 85.0 8 0.00017 35.9 9.4 56 46-105 154-209 (216)
196 KOG0996 Structural maintenance 84.9 9.7 0.00021 43.0 11.5 81 21-101 772-877 (1293)
197 TIGR01000 bacteriocin_acc bact 84.9 23 0.00049 34.9 13.1 39 40-78 162-200 (457)
198 PF08647 BRE1: BRE1 E3 ubiquit 84.8 15 0.00032 29.4 9.8 49 46-95 27-75 (96)
199 PF05622 HOOK: HOOK protein; 84.6 0.3 6.4E-06 50.8 0.0 67 42-123 307-373 (713)
200 TIGR02680 conserved hypothetic 84.5 14 0.00029 41.9 12.7 42 40-81 739-780 (1353)
201 TIGR03495 phage_LysB phage lys 84.4 8.9 0.00019 33.2 8.9 30 51-80 20-49 (135)
202 PF10234 Cluap1: Clusterin-ass 84.4 15 0.00033 35.0 11.2 67 49-115 143-209 (267)
203 PF02994 Transposase_22: L1 tr 84.4 2.3 5E-05 41.4 6.0 68 41-108 103-170 (370)
204 PF09304 Cortex-I_coil: Cortex 84.3 24 0.00052 29.7 11.4 41 38-78 11-51 (107)
205 PRK04778 septation ring format 84.1 14 0.00031 37.7 11.7 49 82-130 317-375 (569)
206 PF09787 Golgin_A5: Golgin sub 84.1 4.4 9.5E-05 40.9 8.0 71 38-112 357-429 (511)
207 TIGR01010 BexC_CtrB_KpsE polys 84.1 7.5 0.00016 36.8 9.1 83 41-130 212-305 (362)
208 PF00170 bZIP_1: bZIP transcri 84.0 14 0.00031 26.9 9.7 21 61-81 23-43 (64)
209 PRK00888 ftsB cell division pr 84.0 5.4 0.00012 32.6 7.1 44 86-129 38-81 (105)
210 PRK04863 mukB cell division pr 83.9 29 0.00063 40.1 15.0 76 39-114 317-401 (1486)
211 KOG4643 Uncharacterized coiled 83.8 12 0.00025 41.9 11.4 77 45-121 504-593 (1195)
212 PF04977 DivIC: Septum formati 83.8 6.5 0.00014 28.9 6.9 35 86-120 28-62 (80)
213 TIGR00293 prefoldin, archaeal 83.7 22 0.00047 28.8 11.1 42 86-127 83-124 (126)
214 KOG1899 LAR transmembrane tyro 83.7 37 0.00081 36.6 14.6 79 40-118 228-313 (861)
215 PF05529 Bap31: B-cell recepto 83.6 12 0.00025 32.7 9.5 69 41-122 116-184 (192)
216 KOG3119 Basic region leucine z 83.6 5.4 0.00012 37.4 7.8 77 52-128 181-261 (269)
217 PF04102 SlyX: SlyX; InterPro 83.6 8.6 0.00019 29.1 7.6 47 65-115 5-51 (69)
218 PRK00286 xseA exodeoxyribonucl 83.4 28 0.00061 34.1 13.0 54 28-81 267-322 (438)
219 PRK01156 chromosome segregatio 83.4 17 0.00036 38.6 12.2 22 89-110 695-716 (895)
220 PF14932 HAUS-augmin3: HAUS au 83.3 22 0.00047 32.9 11.6 38 43-80 68-105 (256)
221 PRK10803 tol-pal system protei 83.2 5.7 0.00012 36.9 7.8 39 40-78 37-75 (263)
222 PRK00736 hypothetical protein; 83.2 9 0.0002 29.1 7.6 41 65-109 6-46 (68)
223 PF15035 Rootletin: Ciliary ro 83.2 14 0.0003 33.1 9.9 34 82-115 67-107 (182)
224 PF05781 MRVI1: MRVI1 protein; 83.2 29 0.00062 36.3 13.4 98 26-125 196-325 (538)
225 PF07200 Mod_r: Modifier of ru 83.1 26 0.00056 29.2 12.6 44 38-81 43-86 (150)
226 PRK01156 chromosome segregatio 83.1 22 0.00047 37.8 12.9 18 106-123 729-746 (895)
227 PRK13169 DNA replication intia 83.1 9.7 0.00021 31.8 8.3 38 67-108 18-55 (110)
228 PF09728 Taxilin: Myosin-like 83.0 45 0.00098 32.0 14.7 79 44-122 203-305 (309)
229 PF00038 Filament: Intermediat 83.0 38 0.00083 31.1 14.7 84 32-115 184-274 (312)
230 PF05278 PEARLI-4: Arabidopsis 83.0 20 0.00044 34.3 11.4 67 49-115 192-261 (269)
231 KOG0250 DNA repair protein RAD 82.9 16 0.00035 40.9 12.1 69 40-108 348-420 (1074)
232 PF07106 TBPIP: Tat binding pr 82.8 8.1 0.00017 33.1 8.1 65 17-81 64-133 (169)
233 KOG0996 Structural maintenance 82.8 5.6 0.00012 44.8 8.7 51 64-114 885-939 (1293)
234 PRK12704 phosphodiesterase; Pr 82.8 41 0.00088 34.6 14.3 36 92-127 110-145 (520)
235 PRK00846 hypothetical protein; 82.8 8.4 0.00018 30.5 7.5 10 69-78 11-20 (77)
236 PRK04325 hypothetical protein; 82.7 6.8 0.00015 30.3 6.9 12 66-77 11-22 (74)
237 KOG0933 Structural maintenance 82.7 10 0.00022 42.4 10.4 39 84-122 887-925 (1174)
238 PF05266 DUF724: Protein of un 82.4 22 0.00048 32.0 11.0 33 86-118 121-153 (190)
239 COG1842 PspA Phage shock prote 82.3 42 0.0009 31.1 14.2 26 101-126 118-143 (225)
240 PF09304 Cortex-I_coil: Cortex 82.3 10 0.00022 31.9 8.1 14 68-81 13-26 (107)
241 TIGR00237 xseA exodeoxyribonuc 82.3 33 0.00071 34.1 13.1 52 29-80 263-316 (432)
242 PF09789 DUF2353: Uncharacteri 82.2 8.3 0.00018 37.6 8.7 72 41-112 77-149 (319)
243 smart00338 BRLZ basic region l 82.0 12 0.00027 27.3 7.7 27 90-116 34-60 (65)
244 PF13747 DUF4164: Domain of un 82.0 24 0.00053 28.1 10.3 37 88-124 38-74 (89)
245 PF01576 Myosin_tail_1: Myosin 81.9 0.44 9.5E-06 51.1 0.0 91 38-128 259-360 (859)
246 PF02841 GBP_C: Guanylate-bind 81.9 19 0.00041 33.7 10.7 72 47-121 187-258 (297)
247 PF14282 FlxA: FlxA-like prote 81.8 8.7 0.00019 31.3 7.5 59 63-122 18-77 (106)
248 PF02388 FemAB: FemAB family; 81.6 9.7 0.00021 37.3 9.1 54 65-119 243-296 (406)
249 KOG0999 Microtubule-associated 81.5 10 0.00023 40.1 9.6 37 40-76 104-140 (772)
250 TIGR03319 YmdA_YtgF conserved 81.5 47 0.001 34.1 14.2 35 92-126 104-138 (514)
251 smart00338 BRLZ basic region l 81.5 7.5 0.00016 28.4 6.4 39 61-103 23-61 (65)
252 PRK04778 septation ring format 81.1 19 0.0004 36.9 11.2 11 115-125 427-437 (569)
253 TIGR02231 conserved hypothetic 81.0 23 0.0005 35.5 11.7 37 82-118 138-174 (525)
254 PF04136 Sec34: Sec34-like fam 81.0 36 0.00079 29.5 12.0 81 42-127 6-86 (157)
255 PF12240 Angiomotin_C: Angiomo 80.9 48 0.001 30.8 13.0 80 52-131 59-171 (205)
256 KOG0249 LAR-interacting protei 80.8 22 0.00048 38.7 11.8 24 102-125 212-235 (916)
257 PF06246 Isy1: Isy1-like splic 80.6 7.1 0.00015 36.8 7.5 57 53-109 40-98 (255)
258 smart00502 BBC B-Box C-termina 80.6 24 0.00052 27.2 13.3 17 101-117 77-93 (127)
259 PF04977 DivIC: Septum formati 80.5 8.9 0.00019 28.1 6.6 27 47-73 21-47 (80)
260 KOG4552 Vitamin-D-receptor int 80.4 13 0.00029 35.0 9.1 36 46-81 70-105 (272)
261 PF15070 GOLGA2L5: Putative go 80.2 12 0.00026 39.3 9.7 60 54-117 5-64 (617)
262 KOG4674 Uncharacterized conser 79.9 17 0.00036 42.8 11.4 72 41-115 803-877 (1822)
263 PF10046 BLOC1_2: Biogenesis o 79.9 29 0.00064 27.8 10.1 63 39-116 31-93 (99)
264 PRK10869 recombination and rep 79.9 15 0.00032 37.7 10.1 54 24-77 137-191 (553)
265 PRK00409 recombination and DNA 79.7 38 0.00083 36.4 13.4 51 30-81 504-554 (782)
266 TIGR02680 conserved hypothetic 79.7 40 0.00086 38.4 14.0 67 43-109 882-955 (1353)
267 PF04899 MbeD_MobD: MbeD/MobD 79.6 25 0.00053 27.3 8.9 54 28-81 6-59 (70)
268 TIGR00020 prfB peptide chain r 79.6 33 0.00072 34.0 12.0 85 32-116 12-112 (364)
269 KOG0964 Structural maintenance 79.5 14 0.0003 41.3 10.1 70 42-115 410-479 (1200)
270 PF08898 DUF1843: Domain of un 79.5 6.5 0.00014 29.4 5.4 36 82-117 17-52 (53)
271 PF12777 MT: Microtubule-bindi 79.5 19 0.00042 34.4 10.2 99 24-130 180-293 (344)
272 PF06657 Cep57_MT_bd: Centroso 79.4 12 0.00026 29.3 7.2 65 38-109 12-77 (79)
273 KOG0612 Rho-associated, coiled 79.4 19 0.00041 40.9 11.2 49 83-131 617-665 (1317)
274 PF11740 KfrA_N: Plasmid repli 79.3 18 0.00038 28.8 8.4 63 11-80 56-118 (120)
275 KOG0980 Actin-binding protein 79.0 22 0.00048 39.2 11.4 20 62-81 464-483 (980)
276 COG2919 Septum formation initi 78.9 35 0.00077 28.2 11.1 42 86-127 61-102 (117)
277 PF03961 DUF342: Protein of un 78.6 22 0.00047 35.2 10.5 27 89-115 375-401 (451)
278 COG1570 XseA Exonuclease VII, 78.6 47 0.001 33.9 12.9 72 10-81 236-323 (440)
279 PF00170 bZIP_1: bZIP transcri 78.6 23 0.0005 25.8 8.9 35 82-116 26-60 (64)
280 PF02403 Seryl_tRNA_N: Seryl-t 78.6 26 0.00056 27.7 9.1 76 50-126 29-104 (108)
281 PF14389 Lzipper-MIP1: Leucine 78.6 11 0.00024 29.9 6.9 67 41-114 6-79 (88)
282 COG4372 Uncharacterized protei 78.5 22 0.00048 36.2 10.5 70 45-118 212-281 (499)
283 PRK15422 septal ring assembly 78.4 33 0.00072 27.5 9.8 23 86-108 50-72 (79)
284 TIGR01554 major_cap_HK97 phage 78.4 13 0.00028 35.6 8.6 8 115-122 86-93 (378)
285 PRK02793 phi X174 lysis protei 78.2 12 0.00026 28.8 6.8 43 69-115 6-48 (72)
286 PF12072 DUF3552: Domain of un 78.2 50 0.0011 29.4 14.6 21 61-81 75-95 (201)
287 PF06103 DUF948: Bacterial pro 78.1 29 0.00063 26.7 12.4 64 52-115 21-87 (90)
288 KOG0978 E3 ubiquitin ligase in 78.1 53 0.0011 35.4 13.6 113 13-125 377-518 (698)
289 PF05010 TACC: Transforming ac 78.0 57 0.0012 30.0 12.7 65 49-113 22-93 (207)
290 PF10481 CENP-F_N: Cenp-F N-te 78.0 13 0.00027 36.2 8.3 63 43-112 18-90 (307)
291 PRK10361 DNA recombination pro 77.9 58 0.0013 33.6 13.4 15 102-116 146-160 (475)
292 PF06785 UPF0242: Uncharacteri 77.8 82 0.0018 31.7 13.9 65 54-118 89-177 (401)
293 PLN03188 kinesin-12 family pro 77.8 31 0.00066 39.5 12.3 84 38-125 1157-1255(1320)
294 PF13863 DUF4200: Domain of un 77.6 35 0.00077 27.4 15.0 61 67-127 42-105 (126)
295 PF13864 Enkurin: Calmodulin-b 77.5 5.5 0.00012 31.7 5.0 56 60-117 40-95 (98)
296 COG3334 Uncharacterized conser 77.5 36 0.00078 31.2 10.7 84 20-109 44-132 (192)
297 TIGR02132 phaR_Bmeg polyhydrox 77.5 17 0.00038 33.2 8.6 42 40-81 76-124 (189)
298 PF05377 FlaC_arch: Flagella a 77.5 9.1 0.0002 28.7 5.7 22 91-112 16-37 (55)
299 cd07666 BAR_SNX7 The Bin/Amphi 77.4 64 0.0014 30.3 13.6 93 25-121 110-213 (243)
300 PF06698 DUF1192: Protein of u 77.4 3.7 8E-05 31.0 3.7 28 40-67 25-52 (59)
301 TIGR00618 sbcc exonuclease Sbc 77.2 57 0.0012 35.7 14.0 26 97-122 261-286 (1042)
302 PF05700 BCAS2: Breast carcino 77.1 57 0.0012 29.5 12.4 12 47-58 147-158 (221)
303 PF05622 HOOK: HOOK protein; 77.1 0.77 1.7E-05 47.8 0.0 90 41-131 237-342 (713)
304 COG5493 Uncharacterized conser 77.0 57 0.0012 30.6 11.9 55 13-76 2-58 (231)
305 PRK00591 prfA peptide chain re 76.7 35 0.00076 33.8 11.2 89 41-129 4-109 (359)
306 KOG1853 LIS1-interacting prote 76.7 60 0.0013 31.7 12.4 36 90-125 99-134 (333)
307 TIGR03752 conj_TIGR03752 integ 76.7 34 0.00073 35.3 11.4 78 45-126 61-139 (472)
308 PRK04406 hypothetical protein; 76.5 21 0.00046 27.8 7.8 43 64-110 11-53 (75)
309 PF13805 Pil1: Eisosome compon 76.4 40 0.00086 32.4 11.2 40 42-81 102-141 (271)
310 KOG4687 Uncharacterized coiled 76.4 40 0.00086 33.3 11.2 56 65-123 52-128 (389)
311 KOG1853 LIS1-interacting prote 76.4 46 0.001 32.4 11.5 56 44-99 92-157 (333)
312 KOG4074 Leucine zipper nuclear 76.3 27 0.00058 34.7 10.1 73 42-114 136-209 (383)
313 COG3206 GumC Uncharacterized p 76.2 33 0.00072 33.7 11.0 30 103-132 373-402 (458)
314 PF10226 DUF2216: Uncharacteri 76.1 52 0.0011 30.4 11.3 52 52-103 22-76 (195)
315 COG3074 Uncharacterized protei 76.1 38 0.00083 27.0 9.5 44 65-108 26-72 (79)
316 PF11855 DUF3375: Protein of u 76.0 22 0.00047 35.9 9.8 94 38-132 117-218 (478)
317 PRK00106 hypothetical protein; 75.9 86 0.0019 32.7 14.2 40 88-127 121-160 (535)
318 PF12240 Angiomotin_C: Angiomo 75.9 4.6 0.0001 37.3 4.6 32 41-72 134-165 (205)
319 PF05008 V-SNARE: Vesicle tran 75.8 29 0.00063 25.9 8.3 52 61-116 22-74 (79)
320 PF11488 Lge1: Transcriptional 75.8 26 0.00056 27.2 8.2 30 52-81 25-54 (80)
321 PF12128 DUF3584: Protein of u 75.7 45 0.00097 37.3 12.9 37 44-80 622-658 (1201)
322 KOG0977 Nuclear envelope prote 75.6 26 0.00056 36.7 10.4 60 57-116 148-217 (546)
323 PF14257 DUF4349: Domain of un 75.6 18 0.00039 32.9 8.4 16 44-59 140-155 (262)
324 PRK00578 prfB peptide chain re 75.5 62 0.0013 32.1 12.6 90 32-123 12-117 (367)
325 KOG2629 Peroxisomal membrane a 75.3 24 0.00052 34.4 9.4 64 47-117 119-182 (300)
326 PF11802 CENP-K: Centromere-as 75.3 32 0.00068 33.1 10.1 27 105-131 156-182 (268)
327 PF06476 DUF1090: Protein of u 75.3 19 0.00041 30.1 7.8 40 42-81 42-87 (115)
328 PRK04325 hypothetical protein; 75.3 21 0.00046 27.6 7.5 15 67-81 5-19 (74)
329 PF13514 AAA_27: AAA domain 75.2 29 0.00064 38.2 11.3 60 62-121 148-213 (1111)
330 TIGR00019 prfA peptide chain r 75.1 51 0.0011 32.7 11.9 27 99-125 78-105 (360)
331 PF02183 HALZ: Homeobox associ 75.1 14 0.0003 26.3 6.0 27 86-112 16-42 (45)
332 KOG2391 Vacuolar sorting prote 75.0 33 0.00071 34.3 10.4 85 19-121 194-278 (365)
333 PF05278 PEARLI-4: Arabidopsis 74.9 51 0.0011 31.7 11.4 63 43-109 200-262 (269)
334 PF12761 End3: Actin cytoskele 74.9 43 0.00093 30.8 10.5 27 49-75 95-121 (195)
335 PRK11448 hsdR type I restricti 74.8 24 0.00052 39.5 10.5 67 48-118 147-213 (1123)
336 TIGR01069 mutS2 MutS2 family p 74.8 68 0.0015 34.5 13.5 40 30-70 499-538 (771)
337 PF13094 CENP-Q: CENP-Q, a CEN 74.5 46 0.001 28.3 10.2 71 47-128 24-94 (160)
338 KOG0241 Kinesin-like protein [ 74.4 18 0.00039 40.8 9.2 65 31-95 346-424 (1714)
339 KOG2417 Predicted G-protein co 74.3 10 0.00022 38.3 6.9 27 99-125 245-271 (462)
340 KOG2662 Magnesium transporters 74.3 31 0.00066 35.0 10.2 74 26-103 175-255 (414)
341 PF04582 Reo_sigmaC: Reovirus 74.2 7.5 0.00016 38.1 5.9 75 41-115 54-138 (326)
342 PF10234 Cluap1: Clusterin-ass 74.2 42 0.0009 32.1 10.6 21 40-60 166-186 (267)
343 KOG4603 TBP-1 interacting prot 74.1 26 0.00056 32.2 8.8 33 48-80 84-116 (201)
344 PF06156 DUF972: Protein of un 74.1 22 0.00047 29.5 7.8 47 71-117 8-57 (107)
345 PF04582 Reo_sigmaC: Reovirus 74.0 3.2 7E-05 40.6 3.3 32 86-117 123-154 (326)
346 COG5374 Uncharacterized conser 74.0 7.2 0.00016 35.7 5.3 35 45-79 138-172 (192)
347 PF10475 DUF2450: Protein of u 73.9 77 0.0017 29.5 13.9 71 11-81 12-98 (291)
348 TIGR03545 conserved hypothetic 73.9 31 0.00068 35.8 10.5 64 63-126 190-267 (555)
349 PRK11519 tyrosine kinase; Prov 73.8 40 0.00088 35.4 11.5 28 104-131 371-398 (719)
350 KOG4673 Transcription factor T 73.8 34 0.00075 37.3 10.9 50 46-95 707-759 (961)
351 PF07794 DUF1633: Protein of u 73.8 33 0.0007 36.3 10.5 92 35-126 589-704 (790)
352 PF14193 DUF4315: Domain of un 73.7 31 0.00068 27.5 8.3 60 44-123 2-61 (83)
353 KOG0946 ER-Golgi vesicle-tethe 73.6 31 0.00067 38.0 10.6 42 40-81 675-716 (970)
354 KOG4196 bZIP transcription fac 73.5 33 0.00071 30.0 8.9 56 61-117 45-102 (135)
355 PRK09841 cryptic autophosphory 73.4 58 0.0013 34.3 12.5 29 45-73 269-297 (726)
356 PRK13729 conjugal transfer pil 73.4 14 0.0003 38.0 7.7 13 44-56 77-89 (475)
357 PRK10869 recombination and rep 73.3 44 0.00096 34.3 11.4 50 82-131 334-388 (553)
358 KOG0239 Kinesin (KAR3 subfamil 73.3 46 0.001 35.4 11.8 63 66-128 243-311 (670)
359 PF06818 Fez1: Fez1; InterPro 73.2 46 0.001 30.7 10.4 9 29-37 23-31 (202)
360 KOG0933 Structural maintenance 73.2 40 0.00086 38.0 11.4 39 43-81 741-779 (1174)
361 PF03938 OmpH: Outer membrane 73.1 34 0.00073 28.4 8.8 39 38-76 31-69 (158)
362 KOG0979 Structural maintenance 73.0 40 0.00087 37.8 11.4 76 40-119 626-701 (1072)
363 PF04576 Zein-binding: Zein-bi 72.9 52 0.0011 27.1 10.3 41 84-124 33-81 (94)
364 PF03961 DUF342: Protein of un 72.9 17 0.00037 35.9 8.1 36 94-129 373-408 (451)
365 COG3524 KpsE Capsule polysacch 72.7 51 0.0011 32.8 11.0 88 25-122 213-323 (372)
366 KOG0972 Huntingtin interacting 72.6 33 0.00071 34.0 9.7 59 41-99 264-325 (384)
367 PRK10698 phage shock protein P 72.5 77 0.0017 28.9 14.3 38 88-125 98-142 (222)
368 PF05667 DUF812: Protein of un 72.5 41 0.00088 35.3 11.0 75 46-124 331-408 (594)
369 PF07246 Phlebovirus_NSM: Phle 72.4 29 0.00063 33.2 9.2 26 56-81 160-185 (264)
370 PHA02557 22 prohead core prote 72.4 38 0.00081 32.7 9.9 73 53-125 144-222 (271)
371 PF14282 FlxA: FlxA-like prote 72.2 21 0.00046 29.0 7.2 42 40-81 23-68 (106)
372 PF05761 5_nucleotid: 5' nucle 72.2 16 0.00035 36.9 7.8 36 45-81 324-359 (448)
373 PF04871 Uso1_p115_C: Uso1 / p 72.1 62 0.0013 27.6 10.8 72 47-122 2-74 (136)
374 PF11285 DUF3086: Protein of u 72.1 9.6 0.00021 36.7 5.9 59 65-130 5-64 (283)
375 PF13935 Ead_Ea22: Ead/Ea22-li 72.1 42 0.00092 28.4 9.3 71 42-116 66-139 (139)
376 PF07798 DUF1640: Protein of u 72.0 67 0.0015 28.0 12.9 31 50-80 58-89 (177)
377 PF06810 Phage_GP20: Phage min 71.8 29 0.00062 30.2 8.4 55 51-106 14-68 (155)
378 PF07926 TPR_MLP1_2: TPR/MLP1/ 71.6 58 0.0013 27.1 12.2 29 44-72 18-46 (132)
379 PF06637 PV-1: PV-1 protein (P 71.6 80 0.0017 32.2 12.3 67 45-113 306-380 (442)
380 KOG0976 Rho/Rac1-interacting s 71.5 29 0.00063 38.5 9.8 31 47-77 327-357 (1265)
381 PRK06975 bifunctional uroporph 71.5 68 0.0015 33.7 12.4 68 43-110 346-413 (656)
382 PF02050 FliJ: Flagellar FliJ 71.5 41 0.0009 25.4 10.3 67 48-114 3-70 (123)
383 PF05600 DUF773: Protein of un 71.4 28 0.0006 35.7 9.4 60 51-114 433-492 (507)
384 PF10226 DUF2216: Uncharacteri 71.3 13 0.00029 34.1 6.4 49 82-131 23-72 (195)
385 KOG0612 Rho-associated, coiled 71.1 64 0.0014 37.0 12.6 40 86-125 512-551 (1317)
386 COG0419 SbcC ATPase involved i 71.0 45 0.00098 35.9 11.3 85 42-129 472-560 (908)
387 PRK02119 hypothetical protein; 70.9 33 0.00072 26.4 7.7 45 61-109 6-50 (73)
388 PF14915 CCDC144C: CCDC144C pr 70.9 1.1E+02 0.0024 30.0 13.5 80 38-117 216-299 (305)
389 PF15272 BBP1_C: Spindle pole 70.8 49 0.0011 30.4 9.9 18 60-77 103-120 (196)
390 COG3937 Uncharacterized conser 70.8 64 0.0014 27.3 10.5 54 64-117 50-104 (108)
391 KOG0614 cGMP-dependent protein 70.7 15 0.00033 38.9 7.4 45 37-81 18-62 (732)
392 KOG0243 Kinesin-like protein [ 70.5 71 0.0015 35.9 12.7 33 68-104 480-512 (1041)
393 PF04859 DUF641: Plant protein 70.5 15 0.00032 31.7 6.2 22 49-70 79-100 (131)
394 PF07798 DUF1640: Protein of u 70.4 73 0.0016 27.8 12.6 9 116-124 148-156 (177)
395 PF15003 HAUS2: HAUS augmin-li 70.0 93 0.002 30.1 12.0 86 39-124 86-192 (277)
396 KOG0239 Kinesin (KAR3 subfamil 70.0 77 0.0017 33.8 12.5 65 52-116 243-313 (670)
397 PRK13922 rod shape-determining 69.8 75 0.0016 29.1 11.1 38 83-120 70-107 (276)
398 PTZ00419 valyl-tRNA synthetase 69.6 13 0.00028 40.6 6.9 27 48-74 927-953 (995)
399 PHA03332 membrane glycoprotein 69.6 92 0.002 35.5 13.2 55 43-97 905-963 (1328)
400 KOG3859 Septins (P-loop GTPase 69.6 27 0.00058 34.7 8.4 31 87-117 375-405 (406)
401 PF05557 MAD: Mitotic checkpoi 69.6 19 0.00042 37.7 8.0 22 88-109 565-586 (722)
402 PRK00888 ftsB cell division pr 69.2 24 0.00051 28.9 6.9 34 83-116 28-61 (105)
403 KOG0978 E3 ubiquitin ligase in 69.2 58 0.0013 35.1 11.4 76 40-115 535-613 (698)
404 PRK03947 prefoldin subunit alp 69.2 65 0.0014 26.7 11.6 37 89-125 94-130 (140)
405 PRK08032 fliD flagellar cappin 69.2 52 0.0011 33.0 10.6 46 59-104 415-460 (462)
406 PF14992 TMCO5: TMCO5 family 69.1 19 0.00041 34.7 7.2 34 44-77 12-45 (280)
407 PF15397 DUF4618: Domain of un 69.1 1.1E+02 0.0024 29.2 12.8 25 27-51 47-71 (258)
408 PF01920 Prefoldin_2: Prefoldi 68.9 50 0.0011 25.3 11.7 36 86-124 66-101 (106)
409 COG1777 Predicted transcriptio 68.9 35 0.00075 31.9 8.6 69 52-122 120-191 (217)
410 PF03357 Snf7: Snf7; InterPro 68.8 65 0.0014 26.6 9.7 24 36-59 8-31 (171)
411 PF11221 Med21: Subunit 21 of 68.8 71 0.0015 27.2 10.0 77 26-113 63-142 (144)
412 PF09738 DUF2051: Double stran 68.8 53 0.0012 31.8 10.2 22 52-73 114-135 (302)
413 PRK13169 DNA replication intia 68.7 33 0.00071 28.7 7.7 44 72-115 9-55 (110)
414 KOG0963 Transcription factor/C 68.7 95 0.0021 33.2 12.6 71 51-121 279-352 (629)
415 PF09432 THP2: Tho complex sub 68.4 80 0.0017 27.6 10.2 71 48-122 50-130 (132)
416 PRK10929 putative mechanosensi 68.4 87 0.0019 35.4 13.0 93 23-115 163-284 (1109)
417 PF09311 Rab5-bind: Rabaptin-l 68.3 4.5 9.6E-05 35.6 2.7 81 30-114 2-82 (181)
418 PHA03161 hypothetical protein; 68.2 45 0.00098 29.6 8.8 9 29-37 39-47 (150)
419 KOG4360 Uncharacterized coiled 68.2 71 0.0015 33.7 11.4 77 36-112 159-249 (596)
420 PRK10807 paraquat-inducible pr 68.2 1.2E+02 0.0026 31.4 13.2 103 20-128 406-525 (547)
421 PF00523 Fusion_gly: Fusion gl 68.0 48 0.001 34.2 10.2 74 33-116 105-178 (490)
422 PRK10636 putative ABC transpor 67.8 54 0.0012 33.9 10.7 64 53-116 559-625 (638)
423 KOG0971 Microtubule-associated 67.7 1.4E+02 0.003 33.8 13.9 88 41-128 953-1051(1243)
424 PF15272 BBP1_C: Spindle pole 67.7 39 0.00084 31.1 8.6 47 63-109 81-127 (196)
425 COG1340 Uncharacterized archae 67.6 60 0.0013 31.6 10.2 65 47-115 31-95 (294)
426 PF10458 Val_tRNA-synt_C: Valy 67.5 32 0.0007 25.5 6.8 27 48-74 2-28 (66)
427 PF09731 Mitofilin: Mitochondr 67.2 1.5E+02 0.0032 30.1 14.3 26 92-117 367-392 (582)
428 PRK05431 seryl-tRNA synthetase 67.2 48 0.0011 32.9 9.9 62 66-128 44-105 (425)
429 PF12128 DUF3584: Protein of u 67.2 1.5E+02 0.0032 33.4 14.5 37 42-78 606-642 (1201)
430 COG0172 SerS Seryl-tRNA synthe 67.0 80 0.0017 32.2 11.4 83 42-131 28-110 (429)
431 KOG2077 JNK/SAPK-associated pr 66.6 47 0.001 35.6 10.0 49 33-81 319-367 (832)
432 KOG3759 Uncharacterized RUN do 66.3 1.1E+02 0.0023 32.2 12.2 34 91-131 218-251 (621)
433 PF14662 CCDC155: Coiled-coil 66.3 1.1E+02 0.0024 28.2 12.8 18 94-111 79-96 (193)
434 PF12998 ING: Inhibitor of gro 66.3 58 0.0013 25.1 10.6 35 82-116 64-99 (105)
435 KOG0243 Kinesin-like protein [ 66.2 54 0.0012 36.9 10.7 29 86-114 473-501 (1041)
436 KOG2896 UV radiation resistanc 66.1 94 0.002 31.3 11.5 24 47-70 84-107 (377)
437 PF09302 XLF: XLF (XRCC4-like 66.0 8.5 0.00018 32.8 3.9 43 31-74 128-170 (171)
438 KOG0018 Structural maintenance 66.0 61 0.0013 36.7 11.1 52 30-81 386-440 (1141)
439 KOG2129 Uncharacterized conser 66.0 88 0.0019 32.4 11.4 40 86-128 187-226 (552)
440 PF11570 E2R135: Coiled-coil r 65.8 40 0.00086 29.5 7.8 55 45-99 3-57 (136)
441 PF09728 Taxilin: Myosin-like 65.7 1.3E+02 0.0028 28.9 13.0 71 40-110 26-99 (309)
442 PF04849 HAP1_N: HAP1 N-termin 65.7 65 0.0014 31.5 10.1 30 52-81 215-244 (306)
443 PRK00736 hypothetical protein; 65.7 32 0.00069 26.2 6.5 39 69-111 3-41 (68)
444 PF06548 Kinesin-related: Kine 65.5 1.2E+02 0.0026 31.5 12.3 15 67-81 430-444 (488)
445 TIGR03545 conserved hypothetic 65.4 1.2E+02 0.0025 31.7 12.5 79 38-116 177-268 (555)
446 smart00502 BBC B-Box C-termina 65.4 60 0.0013 24.9 12.4 26 83-108 73-98 (127)
447 PF14362 DUF4407: Domain of un 65.1 1.2E+02 0.0026 28.2 13.7 27 55-81 133-159 (301)
448 PF14193 DUF4315: Domain of un 65.1 31 0.00067 27.6 6.6 32 86-117 5-36 (83)
449 PF10267 Tmemb_cc2: Predicted 65.1 1.6E+02 0.0035 29.7 13.3 89 39-129 222-329 (395)
450 TIGR01730 RND_mfp RND family e 65.1 75 0.0016 28.5 9.9 11 99-109 112-122 (322)
451 PF06705 SF-assemblin: SF-asse 65.0 1.1E+02 0.0024 27.8 12.7 41 41-81 10-51 (247)
452 smart00503 SynN Syntaxin N-ter 64.8 64 0.0014 25.0 11.0 13 44-56 9-21 (117)
453 PRK00295 hypothetical protein; 64.8 36 0.00078 25.9 6.7 19 52-70 7-25 (68)
454 PF05701 WEMBL: Weak chloropla 64.6 94 0.002 31.7 11.6 38 44-81 282-319 (522)
455 PF09730 BicD: Microtubule-ass 64.5 97 0.0021 33.5 12.0 64 44-111 367-441 (717)
456 KOG1003 Actin filament-coating 64.4 1.2E+02 0.0027 28.2 13.7 97 31-131 45-158 (205)
457 PF05769 DUF837: Protein of un 64.4 1.1E+02 0.0023 27.5 12.1 86 39-125 13-107 (181)
458 PF07989 Microtub_assoc: Micro 64.3 66 0.0014 25.0 8.2 70 45-114 2-75 (75)
459 PF14739 DUF4472: Domain of un 64.1 88 0.0019 26.3 10.3 62 40-112 32-93 (108)
460 cd07638 BAR_ACAP2 The Bin/Amph 63.8 81 0.0017 28.8 9.9 80 44-127 3-85 (200)
461 KOG0406 Glutathione S-transfer 63.8 31 0.00067 32.3 7.4 57 19-81 87-146 (231)
462 PF09787 Golgin_A5: Golgin sub 63.5 47 0.001 33.7 9.2 67 40-106 113-204 (511)
463 PF14661 HAUS6_N: HAUS augmin- 63.4 1.2E+02 0.0026 27.8 11.9 56 26-81 140-195 (247)
464 PF15456 Uds1: Up-regulated Du 63.3 93 0.002 26.4 9.8 30 51-81 23-52 (124)
465 PLN02678 seryl-tRNA synthetase 63.3 96 0.0021 31.5 11.2 42 88-129 70-111 (448)
466 COG1382 GimC Prefoldin, chaper 63.2 96 0.0021 26.5 10.4 35 93-127 74-112 (119)
467 PF10498 IFT57: Intra-flagella 63.2 1.6E+02 0.0035 29.1 13.0 40 82-121 273-316 (359)
468 KOG3650 Predicted coiled-coil 63.1 39 0.00084 28.6 7.1 30 82-111 77-106 (120)
469 PF11500 Cut12: Spindle pole b 63.0 25 0.00054 31.1 6.2 33 49-81 104-136 (152)
470 PF05531 NPV_P10: Nucleopolyhe 63.0 39 0.00084 26.8 6.7 24 92-115 38-61 (75)
471 PRK10865 protein disaggregatio 62.9 34 0.00073 37.0 8.5 13 21-33 385-397 (857)
472 PRK13182 racA polar chromosome 62.9 77 0.0017 28.3 9.4 22 96-117 125-146 (175)
473 PRK09737 EcoKI restriction-mod 62.8 17 0.00038 34.4 5.7 41 88-128 372-416 (461)
474 COG5570 Uncharacterized small 62.7 15 0.00033 27.7 4.2 18 64-81 5-22 (57)
475 PRK14160 heat shock protein Gr 62.7 1.3E+02 0.0028 27.8 11.2 39 43-81 54-92 (211)
476 KOG0240 Kinesin (SMY1 subfamil 62.7 1.1E+02 0.0024 32.5 11.7 36 46-81 417-452 (607)
477 PF07200 Mod_r: Modifier of ru 62.7 86 0.0019 26.1 9.2 85 43-128 34-121 (150)
478 PRK09841 cryptic autophosphory 62.6 65 0.0014 33.9 10.3 31 102-132 369-399 (726)
479 PF10212 TTKRSYEDQ: Predicted 62.5 1.4E+02 0.003 31.4 12.3 79 41-119 418-514 (518)
480 PF08537 NBP1: Fungal Nap bind 62.5 1.1E+02 0.0023 30.3 11.0 34 18-51 109-148 (323)
481 KOG4593 Mitotic checkpoint pro 62.2 89 0.0019 33.8 11.1 24 101-124 239-262 (716)
482 PF03148 Tektin: Tektin family 61.6 1.7E+02 0.0036 28.8 13.3 80 33-117 206-286 (384)
483 PRK05689 fliJ flagellar biosyn 61.6 93 0.002 25.8 13.6 33 89-121 85-117 (147)
484 COG2900 SlyX Uncharacterized p 61.4 73 0.0016 25.2 7.9 22 48-69 6-27 (72)
485 PF07956 DUF1690: Protein of U 61.4 80 0.0017 27.3 9.0 42 11-52 7-51 (142)
486 KOG0709 CREB/ATF family transc 61.3 17 0.00037 37.4 5.5 47 62-112 270-316 (472)
487 PF05852 DUF848: Gammaherpesvi 61.2 14 0.0003 32.5 4.4 7 29-35 39-45 (146)
488 PF01576 Myosin_tail_1: Myosin 61.2 2.7 5.9E-05 45.2 0.0 75 45-119 182-259 (859)
489 cd00632 Prefoldin_beta Prefold 61.2 33 0.00072 27.3 6.2 40 37-76 64-103 (105)
490 PF10883 DUF2681: Protein of u 61.2 32 0.00068 27.9 6.1 39 83-121 24-62 (87)
491 PF13815 Dzip-like_N: Iguana/D 61.0 49 0.0011 27.2 7.3 47 66-112 71-117 (118)
492 PF12004 DUF3498: Domain of un 60.9 2.8 6E-05 43.0 0.0 59 42-100 368-433 (495)
493 PF15030 DUF4527: Protein of u 60.9 90 0.002 30.1 9.9 72 40-115 13-84 (277)
494 PF04012 PspA_IM30: PspA/IM30 60.9 1.2E+02 0.0026 26.8 14.0 108 15-123 24-139 (221)
495 KOG2180 Late Golgi protein sor 60.8 67 0.0014 35.0 9.9 78 45-126 42-123 (793)
496 PF07111 HCR: Alpha helical co 60.8 1.6E+02 0.0035 32.0 12.7 88 28-115 154-261 (739)
497 PF09744 Jnk-SapK_ap_N: JNK_SA 60.8 99 0.0021 27.3 9.6 76 27-106 80-155 (158)
498 PF02996 Prefoldin: Prefoldin 60.8 21 0.00045 28.3 5.0 36 41-76 82-117 (120)
499 PF05859 Mis12: Mis12 protein; 60.7 7 0.00015 33.1 2.4 55 12-71 87-143 (144)
500 KOG3564 GTPase-activating prot 60.6 84 0.0018 33.1 10.3 107 27-133 12-122 (604)
No 1
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.89 E-value=0.026 Score=48.27 Aligned_cols=78 Identities=21% Similarity=0.321 Sum_probs=54.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
|+=.-++-.|+..||..+..|-+...+|+..|..|+.|+..||..|- ++...+.+......+.+....++..|+|-|.
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld-~~~~~l~~~k~~lee~~~~~~~~E~l~rriq 83 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELD-KLEEQLKEAKEKLEESEKRKSNAEQLNRRIQ 83 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHhHHHHHhhHH
Confidence 34455677899999999999999999999999999999999999996 3333333333333333333333334444443
No 2
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.85 E-value=0.027 Score=49.52 Aligned_cols=77 Identities=26% Similarity=0.449 Sum_probs=25.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
++.||..+..++..|+.++.++...|.+|+..+..|+..+. ..|+.....+..|..|..+|--+...|...+.+|+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555554444444444 333344444444444444444444444444444443
No 3
>PRK11637 AmiB activator; Provisional
Probab=96.81 E-value=0.02 Score=55.52 Aligned_cols=109 Identities=18% Similarity=0.267 Sum_probs=54.4
Q ss_pred CCCChHHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--
Q 023690 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLS-- 81 (278)
Q Consensus 11 ~F~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~-------~Lq~r~s~le~~l~-- 81 (278)
.|.+-.-|+.+| |-++- ...+++.-...++.++..+++++.++...|. ++++++..++.+|.
T Consensus 17 ~~~~~~~~~~~l-------l~~~~--~~~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 17 RFAIRPILYASV-------LSAGV--LLCAFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA 87 (428)
T ss_pred hhhhhhHHHHHH-------HHHHH--HHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665 22111 1222222223444444444444444444444 44444444444444
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 82 -DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 82 -~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
.+|....++..++.++.+.|...++.+..++.+++.--+.+|..+..
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555556666666666666666666666666655544444544443
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.73 E-value=0.024 Score=51.34 Aligned_cols=69 Identities=26% Similarity=0.372 Sum_probs=43.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
-...|+-+||.|+..|+++|++-+... ..+...++ .++..+.+..++|.+||+.|...+..+..++..|
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~---~~~~~~l~----~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTW---NQRTAEMQ----QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355788899999999999998865432 22222222 3333555555556666666666666666655444
No 5
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=96.61 E-value=0.031 Score=55.59 Aligned_cols=64 Identities=22% Similarity=0.305 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS-------------------------DKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------------------------~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
++.||..+.+..++..+|+.+-..+|..|+ -.-..+++|++.|.+|+|+|+..+.
T Consensus 287 ar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~keLe 366 (442)
T PF06637_consen 287 ARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAKELE 366 (442)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555443 2233578888999999999999998
Q ss_pred HHhhhHHHH
Q 023690 107 KLQRDVSKL 115 (278)
Q Consensus 107 kL~rDvaKL 115 (278)
...|+++.|
T Consensus 367 ekkreleql 375 (442)
T PF06637_consen 367 EKKRELEQL 375 (442)
T ss_pred HHHHHHHHH
Confidence 888888764
No 6
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.57 E-value=0.036 Score=57.66 Aligned_cols=85 Identities=28% Similarity=0.390 Sum_probs=75.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
-+++-.+|.+||.|+..|+..+.|.++.|..|+.++..+...+. -.+.+.+.++..|.++...=...|.-|.+.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~ 503 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERK 503 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999999999999999999999999988877 445567788899999999999999999999
Q ss_pred HHHHHHHHHHH
Q 023690 112 VSKLEVFRKTL 122 (278)
Q Consensus 112 vaKLE~FKk~L 122 (278)
+++|+.+++-.
T Consensus 504 l~~l~k~~~lE 514 (652)
T COG2433 504 LAELRKMRKLE 514 (652)
T ss_pred HHHHHHHHhhh
Confidence 99999887733
No 7
>PRK11637 AmiB activator; Provisional
Probab=96.53 E-value=0.052 Score=52.73 Aligned_cols=68 Identities=9% Similarity=0.180 Sum_probs=28.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
..+..++.++..|..+|.+-...|.+++.++..++.++. ...+++.+++++.+.+...++++.+.+.+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~----~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQID----ELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444433333333332 44444444444444444444444444443
No 8
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.35 E-value=0.04 Score=48.49 Aligned_cols=72 Identities=18% Similarity=0.364 Sum_probs=48.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT-VRKLQRDVSKL 115 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T-vKkL~rDvaKL 115 (278)
.+...+..|+.++..|...|.||...|..|++-+..|..++. .+.+...+|++||+.|... +++-+++..+|
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~----~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN----MLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555556666666666667777777777766666655 8899999999999999876 34445555544
No 9
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=96.25 E-value=0.061 Score=41.49 Aligned_cols=65 Identities=28% Similarity=0.435 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 54 ALRSQLAEKDSRIAELQSQIESIYSS---LSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~le~~---l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
.|-..|+|||..|+.|.+.-..|-.. +..-++.....+..+.++.+.|...+.++..++..|+.+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678999999999999655555443 334444444455555555555555555555555544443
No 10
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=96.12 E-value=0.12 Score=43.54 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+.+|+.+++++++.+..++.+...|+..+.
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555555544
No 11
>PRK09039 hypothetical protein; Validated
Probab=96.08 E-value=0.11 Score=50.09 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=68.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD-VSKL 115 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rD-vaKL 115 (278)
....|+..|+.+...++....|....|.-|+.+++.|..+|. +.|..+.++....+...+.|...+.++-.+ +..|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677777788888888888888888888888888888877 666677777777777777777777666544 8889
Q ss_pred HHHHHHHHhhcc
Q 023690 116 EVFRKTLVQSLK 127 (278)
Q Consensus 116 E~FKk~LmqSLq 127 (278)
+.||..+..-|.
T Consensus 193 ~~~~~~~~~~l~ 204 (343)
T PRK09039 193 NRYRSEFFGRLR 204 (343)
T ss_pred HHhHHHHHHHHH
Confidence 999999977775
No 12
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=96.00 E-value=0.39 Score=41.56 Aligned_cols=96 Identities=26% Similarity=0.378 Sum_probs=70.1
Q ss_pred hHHHHHHHH-----HHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 29 QLDVARKIT-----SIAISTRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK 96 (278)
Q Consensus 29 QLdlarkIt-----s~A~atRVs~LE~E~~~LR~~La-------EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~ 96 (278)
||+|.-+.- +--+..+|-+||+|+......+. .+.+.|..|+.++..+...+. ....+...|.+
T Consensus 5 ~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~----~L~~EL~~l~s 80 (140)
T PF10473_consen 5 FLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN----QLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 455544433 45577889999998776655433 344455666666666665554 88999999999
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
||..|...+.+.+..|+-||...-.+..-|+.
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~ 112 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELESLNSSLENLLQE 112 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999987766655554
No 13
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.61 E-value=0.21 Score=46.55 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
++++|..+++..+.+++..+.+|+.++..++..++
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~ 69 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444
No 14
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.48 E-value=0.42 Score=44.62 Aligned_cols=83 Identities=22% Similarity=0.400 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHHHHHHH
Q 023690 32 VARKITSIAISTRVSDLESEHSALRSQLAE---KDSRIAELQSQIESIYSSLS---DKLG-------QAQADKERLSKEN 98 (278)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaE---Kd~~i~~Lq~r~s~le~~l~---~rL~-------~a~ee~~kL~~E~ 98 (278)
++.+|.--.|..-|+.+|.|+..+|.++.. |-..+.+ ++.++.|+.+++ .++. .+.++..+|+++.
T Consensus 48 ~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~-~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 48 EALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKD-ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677888899999999999888762 2211111 223344444443 3333 5555555666665
Q ss_pred HHHHHHHHHHhhhHHHH
Q 023690 99 EALTNTVRKLQRDVSKL 115 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKL 115 (278)
..|...+.++.+++.-+
T Consensus 127 ~~l~~~~~~~e~~~~e~ 143 (239)
T COG1579 127 EDLKERLERLEKNLAEA 143 (239)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 15
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.47 E-value=0.21 Score=41.95 Aligned_cols=68 Identities=22% Similarity=0.404 Sum_probs=54.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
..|+.++.+|+..+..-...+..|+++++.++.++. .+..+...|.++...+..++|.+..+|.||.+
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~----~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~ 122 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA----SAEEKERQLQKQLKSLEAKLKQEKEELQKLKN 122 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777888888888887776 78888888999999999999999999999864
No 16
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.40 E-value=0.39 Score=47.22 Aligned_cols=97 Identities=10% Similarity=0.224 Sum_probs=59.9
Q ss_pred HhcCCCCchhhHHHHHHHH--------HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 19 LQVLPSDPFEQLDVARKIT--------SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD 90 (278)
Q Consensus 19 l~vLP~DP~EQLdlarkIt--------s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee 90 (278)
...++..|.+-..+-.+|. ....+.++..++.++..|+.++.+....+..++..+..++..+...+....++
T Consensus 142 ~~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e 221 (562)
T PHA02562 142 VPFMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNK 221 (562)
T ss_pred hhHhcCChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555 34457777788888888888888888888888777777776655444444445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 91 KERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
..+|.++...|...+..|..++..|
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555544444444444333
No 17
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.36 E-value=0.74 Score=41.22 Aligned_cols=86 Identities=23% Similarity=0.364 Sum_probs=44.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK---- 114 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK---- 114 (278)
+..+..++..+..||..+.+..+.|.++++++..+..++. ..|....+...++.+....+.+.++.+...+.+
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666666666666666666665 333333333334444444444444444444443
Q ss_pred HHHHHHHHHhhcc
Q 023690 115 LEVFRKTLVQSLK 127 (278)
Q Consensus 115 LE~FKk~LmqSLq 127 (278)
|..=++.|++.|.
T Consensus 142 l~~~r~~l~~~l~ 154 (302)
T PF10186_consen 142 LARRRRQLIQELS 154 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 4445556666554
No 18
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=95.20 E-value=0.98 Score=40.81 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|+|.-+-..+||......||+.+..|...|.+..+.|.++..+=-..+.+...+|....++-..|...|-.+...+..|.
T Consensus 123 LeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 123 LELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888999999999999999999999999999999997655555555557777777777888888888888888888
Q ss_pred hhHHHHHHH
Q 023690 110 RDVSKLEVF 118 (278)
Q Consensus 110 rDvaKLE~F 118 (278)
++|..|+.=
T Consensus 203 ~ei~~l~~~ 211 (221)
T PF05700_consen 203 QEIEQLKRK 211 (221)
T ss_pred HHHHHHHHH
Confidence 777776543
No 19
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=95.10 E-value=0.7 Score=39.77 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=42.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
....+...|+.|+..+...+.+...++..+++....+...+. +++....+...++.+|-..|.+-++.+.+.+..++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666555555555555554443333 55666666666666666666544444444444443
Q ss_pred HHH
Q 023690 117 VFR 119 (278)
Q Consensus 117 ~FK 119 (278)
...
T Consensus 165 ~~~ 167 (191)
T PF04156_consen 165 SQL 167 (191)
T ss_pred HHH
Confidence 333
No 20
>PRK03918 chromosome segregation protein; Provisional
Probab=95.05 E-value=0.77 Score=47.75 Aligned_cols=94 Identities=24% Similarity=0.305 Sum_probs=41.0
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 023690 21 VLPSDPFEQLDVARKITSIAISTRVSDLESEH----------SALRSQLAEKDSRIAELQSQIESIYSSLS------DKL 84 (278)
Q Consensus 21 vLP~DP~EQLdlarkIts~A~atRVs~LE~E~----------~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------~rL 84 (278)
++-.|-|+++.-..+-....+..++..|+..+ ..|+.++.+....+..++.++..++.++. ..|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l 233 (880)
T PRK03918 154 ILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL 233 (880)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554444444444555555544443 23333333444444444444444444443 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 85 GQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
....++...|.++...|...++.|..++.+
T Consensus 234 ~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~ 263 (880)
T PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRE 263 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444333333
No 21
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.92 E-value=0.11 Score=49.55 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=31.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
+..|+.||++|+..|.+||+.|-+-.++|+.|-.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 5689999999999999999999999999998865
No 22
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.89 E-value=0.55 Score=48.19 Aligned_cols=44 Identities=16% Similarity=0.305 Sum_probs=34.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAE--KDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaE--Kd~~i~~Lq~r~s~le~~l~ 81 (278)
..++..++..||.|+..|..+|.. .+..|..|++++..++..+.
T Consensus 393 ~~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 393 KSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 567788899999999999999974 34677777777777777665
No 23
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.76 E-value=1.3 Score=43.28 Aligned_cols=99 Identities=21% Similarity=0.293 Sum_probs=79.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----------------
Q 023690 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQ---------------- 88 (278)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~---------------- 88 (278)
..|.-...-|..|+..||...+.--..|-.+|.+-..+|++++.-+..|+.++. +-|+.|.
T Consensus 236 ~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcr 315 (384)
T PF03148_consen 236 NDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCR 315 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHH
Confidence 344555566789999999998888888888888888899999999999998888 2333222
Q ss_pred -HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 89 -ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 89 -ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
.-+..|.+|-..|..++.+|+..+...+..-+.|....
T Consensus 316 D~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~~ 354 (384)
T PF03148_consen 316 DPPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERTR 354 (384)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22378999999999999999999999988888887653
No 24
>PRK02224 chromosome segregation protein; Provisional
Probab=94.71 E-value=0.93 Score=47.42 Aligned_cols=6 Identities=17% Similarity=0.285 Sum_probs=2.5
Q ss_pred hhhHHH
Q 023690 27 FEQLDV 32 (278)
Q Consensus 27 ~EQLdl 32 (278)
||+++-
T Consensus 164 ~e~~~~ 169 (880)
T PRK02224 164 LEEYRE 169 (880)
T ss_pred HHHHHH
Confidence 444433
No 25
>PRK10884 SH3 domain-containing protein; Provisional
Probab=94.61 E-value=0.49 Score=42.98 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=43.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
-++...+.+|+.+...++++.. +..++|++++..++..+. ...++|.+|.+|...+.+.+..|+.++.
T Consensus 96 p~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~----~L~~~n~~L~~~l~~~~~~~~~l~~~~~ 163 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVIN----GLKEENQKLKNQLIVAQKKVDAANLQLD 163 (206)
T ss_pred HHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888888888887654 555666666666665554 4555566666666555555555554433
No 26
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.54 E-value=0.46 Score=47.87 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
...+..++...|.+|+ ...+|+.+|.+|+-.+..|+|.|.+|+-.+|+.+=.+.+-|.+-
T Consensus 43 ~~ai~a~~~~~E~~l~----~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~~ 102 (459)
T KOG0288|consen 43 SRAIKAKLQEKELELN----RLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIREL 102 (459)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444443 44455555566666666666666666666666665555555443
No 27
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.54 E-value=0.9 Score=44.06 Aligned_cols=86 Identities=31% Similarity=0.457 Sum_probs=51.4
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHh
Q 023690 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT--------VRKLQ 109 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~La-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T--------vKkL~ 109 (278)
+.|..|+.+|-.|-..|=.+|. |...++.-|+.++..|+.+.. .......+|.+|+-.|.++ |.+|.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~----~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS----AKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444 344444555555555544332 2233345677777777766 57899
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 023690 110 RDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 110 rDvaKLE~FKk~LmqSLq~ 128 (278)
+.+++|++=||.|=..|..
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHcc
Confidence 9999999999998887754
No 28
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=94.52 E-value=1.2 Score=35.56 Aligned_cols=79 Identities=23% Similarity=0.296 Sum_probs=58.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK-------LEV 117 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK-------LE~ 117 (278)
+-.||.+...++..+..|-..+..|++++..|+.+.. .+.++.-.+-+-+++|.+-+|+|+..+.| |..
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~----kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKA----KADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4578899999999999999999999999999999887 66666666666666666666666655544 555
Q ss_pred HHHHHHhhcc
Q 023690 118 FRKTLVQSLK 127 (278)
Q Consensus 118 FKk~LmqSLq 127 (278)
.=+.+++.|.
T Consensus 81 ~E~~~~~~l~ 90 (96)
T PF08647_consen 81 TEKEFVRKLK 90 (96)
T ss_pred HHHHHHHHHH
Confidence 4445555443
No 29
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.47 E-value=0.43 Score=46.28 Aligned_cols=74 Identities=20% Similarity=0.387 Sum_probs=60.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH----------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAE----------------KDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaE----------------Kd~~i---~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~ 98 (278)
...+..|+..++.++.-||.+++. |.+.| +.+++++..|+..|+ ...+|.+.|..|+
T Consensus 88 v~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~q----s~lDEkeEl~~ER 163 (319)
T PF09789_consen 88 VEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQ----SLLDEKEELVTER 163 (319)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 457778888888888888887754 55555 455678888888888 9999999999999
Q ss_pred HHHHHHHHHHhhhHHHH
Q 023690 99 EALTNTVRKLQRDVSKL 115 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKL 115 (278)
|....-+-+||.++..+
T Consensus 164 D~yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 164 DAYKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999998664
No 30
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.45 E-value=0.88 Score=38.96 Aligned_cols=79 Identities=20% Similarity=0.322 Sum_probs=51.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSR----------IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNT 104 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~----------i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~T 104 (278)
-.++-.|+..||.++..+..+|.+-... ...|+.||..||.+|- .+|+.+.+........-+-+...
T Consensus 37 I~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRk 116 (143)
T PF12718_consen 37 ITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERK 116 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3467788888888888777776643332 2346677777777776 66666666666666666666666
Q ss_pred HHHHhhhHHHHH
Q 023690 105 VRKLQRDVSKLE 116 (278)
Q Consensus 105 vKkL~rDvaKLE 116 (278)
|+.|......+|
T Consensus 117 v~~le~~~~~~E 128 (143)
T PF12718_consen 117 VKALEQERDQWE 128 (143)
T ss_pred HHHHHhhHHHHH
Confidence 666655544433
No 31
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.41 E-value=0.75 Score=47.57 Aligned_cols=81 Identities=17% Similarity=0.343 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 023690 31 DVARKITSIAIST------RVSDLESEHSALRSQLAEKDSRI-------AELQSQIESIYSSLS---DKLGQAQADKERL 94 (278)
Q Consensus 31 dlarkIts~A~at------RVs~LE~E~~~LR~~LaEKd~~i-------~~Lq~r~s~le~~l~---~rL~~a~ee~~kL 94 (278)
.=|+++..-+-+. -+.+|+.|+..||.++.++.... .+...+++.+++++. .+.+..+++...|
T Consensus 95 ~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~L 174 (546)
T KOG0977|consen 95 ATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRL 174 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456666555333 46778888888888888884443 455667778888777 7888888888888
Q ss_pred HHHHHHHHHHHHHHhhh
Q 023690 95 SKENEALTNTVRKLQRD 111 (278)
Q Consensus 95 ~~E~~~La~TvKkL~rD 111 (278)
.+|+..|-..+..+..+
T Consensus 175 k~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 175 KAENSRLREELARARKQ 191 (546)
T ss_pred HHHhhhhHHHHHHHHHH
Confidence 88888877776665543
No 32
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.31 E-value=0.56 Score=46.14 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=13.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
.|+..|+.++..+|..+.++-..+..|+.++..|+
T Consensus 337 ~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~ 371 (562)
T PHA02562 337 KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQ 371 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333444444333
No 33
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.24 E-value=0.47 Score=50.03 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
-...+...|+..||.|+.+||..|..|++.+..|+..+..|
T Consensus 538 e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 538 ECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999999999999999999999877433
No 34
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=94.20 E-value=0.87 Score=43.44 Aligned_cols=78 Identities=19% Similarity=0.319 Sum_probs=43.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
.++...+..||.|...|.+.|.+=+..-.+|.+.+..|+.++. .......-+...+++|+++|.+++.-+
T Consensus 46 ~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~ 125 (314)
T PF04111_consen 46 EELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYA 125 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666655555555555555555544 111122222344556666666666666
Q ss_pred hhhHHHHH
Q 023690 109 QRDVSKLE 116 (278)
Q Consensus 109 ~rDvaKLE 116 (278)
..++.+|+
T Consensus 126 ~~~L~~L~ 133 (314)
T PF04111_consen 126 SNQLDRLR 133 (314)
T ss_dssp HHHHHCHH
T ss_pred HHHHHHHH
Confidence 66666654
No 35
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.10 E-value=0.82 Score=35.09 Aligned_cols=60 Identities=25% Similarity=0.340 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQ--SQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq--~r~s~le~~l~-~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
+||+++..||..|.-=.+++...+ .+.-..|+.-. .+|..+-+++.+|..|++.|..-.+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999888854444333222 22222233222 6777888888888888888876633
No 36
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=93.97 E-value=0.59 Score=43.54 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=60.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------------------------------------- 81 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------------------------------------------- 81 (278)
..|+.++..|.+++.|-.++|..||+-+..++....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 578999999999999999999999999998885411
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHhhcccc
Q 023690 82 ----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF------RKTLVQSLKDD 129 (278)
Q Consensus 82 ----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F------Kk~LmqSLq~d 129 (278)
..=-.-.++|.+|.+|...+.+++.+|.++|++|++= |=--|||.+..
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 0001124567788888888888888888888777542 33456676643
No 37
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.81 E-value=1.1 Score=47.30 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
++...|.++.+.|...+..+...+.+
T Consensus 896 ~~~~~l~~~~~~l~~~~~~~~~~~~~ 921 (1164)
T TIGR02169 896 AQLRELERKIEELEAQIEKKRKRLSE 921 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 38
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=93.76 E-value=1.6 Score=49.25 Aligned_cols=111 Identities=20% Similarity=0.258 Sum_probs=74.1
Q ss_pred ChHHHHh-cCCCCchhhHHHHHHHHH---------------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 14 LPEEVLQ-VLPSDPFEQLDVARKITS---------------IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 14 lp~eil~-vLP~DP~EQLdlarkIts---------------~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
|.++||. +||.+|.+=..|+-+|.. .+=..|+..|++|+.+-|.....-...+.+.++-+...+
T Consensus 1497 vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4556664 699999998888888862 223568999999999888877655555555555555555
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHh
Q 023690 78 SSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE----VFRKTLVQ 124 (278)
Q Consensus 78 ~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE----~FKk~Lmq 124 (278)
.++. .-+..+.+...|.++|-..-...+..-+..|++|| .+|...||
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544 34455666667777777666666666666666554 45555554
No 39
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=93.73 E-value=1.5 Score=41.55 Aligned_cols=84 Identities=27% Similarity=0.410 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHH-------hhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 29 QLDVARKITSIAIST-------RVS---DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (278)
Q Consensus 29 QLdlarkIts~A~at-------RVs---~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~ 98 (278)
-++|.||=.-+|+.. ||- .|-.....+|.+|.|-.....+|.+++..||..+- +.+++...|..||
T Consensus 104 D~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~e----e~~erlk~le~E~ 179 (290)
T COG4026 104 DVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYE----EVQERLKRLEVEN 179 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 467788888777752 221 33344566777777666667777777777887766 5555555666666
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 023690 99 EALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE 116 (278)
+.|..-.|+|-..|.+|+
T Consensus 180 s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 180 SRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHhchhHHHHHH
Confidence 666666666665555553
No 40
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.72 E-value=1.7 Score=37.38 Aligned_cols=20 Identities=15% Similarity=0.584 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 023690 96 KENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 96 ~E~~~La~TvKkL~rDvaKL 115 (278)
++-+++...++.+.+++..|
T Consensus 130 ~~l~~l~~~~~~~~~e~~~l 149 (191)
T PF04156_consen 130 ERLDSLDESIKELEKEIREL 149 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 41
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=93.72 E-value=1.2 Score=40.56 Aligned_cols=75 Identities=27% Similarity=0.403 Sum_probs=56.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
-|--+||++..-+...+++-+.....|+.-+.-...+=+ .+-..+.++...|..|+..+-.++.+|+|.|.-|+.
T Consensus 105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355567777777777777666666666654443332222 788889999999999999999999999999998874
No 42
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=93.70 E-value=2.7 Score=42.34 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=80.5
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH----------
Q 023690 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQAD---------- 90 (278)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-----~rL~~a~ee---------- 90 (278)
.-.||..=.-.+..|+..|+...+.=..+|.-+|+.+.++|++.+..|..|+.+|. -|+.+..-+
T Consensus 261 tan~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvEL 340 (421)
T KOG2685|consen 261 TANDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVEL 340 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHH
Confidence 33466666666789999999999999999999999999999999999999999998 344444433
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 91 -----KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 91 -----~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
+-.|-.|--.|-.||..|.-.|++=|.=++.|...
T Consensus 341 CrD~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~~ 380 (421)
T KOG2685|consen 341 CRDQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVNH 380 (421)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888888888888888888877666666543
No 43
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.68 E-value=2.8 Score=36.18 Aligned_cols=51 Identities=16% Similarity=0.311 Sum_probs=23.5
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (278)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~ 79 (278)
--|||| +|-...|..++..=..|+.+||.....--+.+..+++++..+...
T Consensus 42 iDFeqL----kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~ 92 (177)
T PF13870_consen 42 IDFEQL----KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEE 92 (177)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346666 344444544444444444444444444444444444444433333
No 44
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=93.64 E-value=1.3 Score=51.59 Aligned_cols=91 Identities=24% Similarity=0.354 Sum_probs=80.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-----------~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
..+++..+.+|+.|+..||.++.|=...+++|+.+++.+..+++ .++....+.+.+|++.-..+...+.
T Consensus 1317 k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1317 KSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 67889999999999999999999999999999999999888877 3356777778888888899999999
Q ss_pred HHhhhHHHHHHHHHHHHhhccc
Q 023690 107 KLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 107 kL~rDvaKLE~FKk~LmqSLq~ 128 (278)
-++.-.++||.-|..|+|-|.+
T Consensus 1397 ~~~~~~~~Lek~k~~l~~el~d 1418 (1930)
T KOG0161|consen 1397 AANAKNASLEKAKNRLQQELED 1418 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHHH
Confidence 9999999999999999887654
No 45
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.61 E-value=3.2 Score=37.33 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=52.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
.......|..+..|..+|+.-|..-...+.+|+.++...+..-. .|+....++...|.-|...|...+.+|.++
T Consensus 43 e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 43 EERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777777777777777777777777666655433 667777777777777777777777777666
Q ss_pred HHHHH
Q 023690 112 VSKLE 116 (278)
Q Consensus 112 vaKLE 116 (278)
-..|.
T Consensus 123 rdeL~ 127 (201)
T PF13851_consen 123 RDELY 127 (201)
T ss_pred HHHHH
Confidence 55554
No 46
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.59 E-value=1.2 Score=40.31 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHH------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 28 EQLDVARKITSI------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 28 EQLdlarkIts~------A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.||.-|..+..- .+..|+.-+|.++.+.-.++..-...|.+|+.++..+...|.
T Consensus 99 ~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 99 QQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 356666666633 346677777777777777777667777777766666665554
No 47
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.43 E-value=0.7 Score=41.55 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=38.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
..|..++..+..+|.+++..|.+|+.++.-....+. .+...+..++..|..|...|-+.++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888888888777776666 3333444444444444444444443
No 48
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.28 E-value=1.8 Score=41.04 Aligned_cols=11 Identities=36% Similarity=0.604 Sum_probs=4.1
Q ss_pred hhhHHHHHHHH
Q 023690 46 SDLESEHSALR 56 (278)
Q Consensus 46 s~LE~E~~~LR 56 (278)
..|+.|+..||
T Consensus 187 ~~L~~e~~~Lk 197 (325)
T PF08317_consen 187 AELEEELENLK 197 (325)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 49
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.23 E-value=0.96 Score=45.48 Aligned_cols=67 Identities=21% Similarity=0.388 Sum_probs=36.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
.|..+...|++.+...+.+....-..|++.+..+|.++. ..|.+...+..++.+..+.+...+.+|.
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~ 107 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHH
Confidence 556666666666666666666665555555555555554 3333444444444444444444444443
No 50
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.21 E-value=1.7 Score=44.33 Aligned_cols=85 Identities=13% Similarity=0.200 Sum_probs=48.7
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHH
Q 023690 28 EQLDVARKITSIAISTRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQA 89 (278)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~-E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-----------------~rL~~a~e 89 (278)
.||+--|+--. .+++++|. ++..+|+.+.++-....+|+...+.++.+-+ ..|+...|
T Consensus 328 sqleSqr~y~e----~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 328 SQLESQRKYYE----QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred hhhhHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777666544 67777776 7888887777666665554444444433322 22334445
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 90 DKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
++..|.+..+...+++|+++....+.-
T Consensus 404 ~n~~l~knq~vw~~kl~~~~e~~~~~~ 430 (493)
T KOG0804|consen 404 ENKKLIKNQDVWRGKLKELEEREKEAL 430 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 555555555555566666655544433
No 51
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=93.06 E-value=1.2 Score=38.23 Aligned_cols=61 Identities=28% Similarity=0.432 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
.|..|+..|+.++.+-...+..|+..+..|...+. ..++.+.+.+|.+|+..|...+..|.
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t--~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLSSEPT--NEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544444444444444444444332 12233334444444444444444333
No 52
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.04 E-value=2.8 Score=43.86 Aligned_cols=84 Identities=23% Similarity=0.300 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHH
Q 023690 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------------DKLGQAQADKERLSKENEA 100 (278)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------------~rL~~a~ee~~kL~~E~~~ 100 (278)
-.|=.+.-|..|+..|-.++..|+.....=-.+|.+|+..+..|..++. ..-....++...|.+|+..
T Consensus 19 ~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~ 98 (617)
T PF15070_consen 19 QLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELES 98 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 3333344466777777777777766666666666666666666665554 1112334455566666666
Q ss_pred HHHHHHHHhhhHHHHH
Q 023690 101 LTNTVRKLQRDVSKLE 116 (278)
Q Consensus 101 La~TvKkL~rDvaKLE 116 (278)
|...++...++...|.
T Consensus 99 L~~qlqaqv~~ne~Ls 114 (617)
T PF15070_consen 99 LEEQLQAQVENNEQLS 114 (617)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666655544444443
No 53
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=92.87 E-value=1.8 Score=33.53 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
..+....++++.|....++|...|..|+..|.+|.
T Consensus 35 ~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 35 HMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34448888888999999999999999999998874
No 54
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=92.86 E-value=5.2 Score=35.81 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=22.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
....|+..|+.++..+|..+.++.+.+.++++.+......|
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666655555555555554444443
No 55
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.84 E-value=2.7 Score=43.62 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=33.5
Q ss_pred HHHHhcCCCCchhhHHHH--HHH------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 16 EEVLQVLPSDPFEQLDVA--RKI------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 16 ~eil~vLP~DP~EQLdla--rkI------ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
.++|-|.|..-+.|..|- .|= ....+...+..|+.++..|...|.........|+.+...+..
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~ 199 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTE 199 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777777545443332 221 134455556666666666666666555555555554444433
No 56
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.84 E-value=2.4 Score=35.80 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=8.8
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 023690 105 VRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 105 vKkL~rDvaKLE~FKk~Lm 123 (278)
|-.|.-||.-|+.+=|..+
T Consensus 98 veEL~~Dv~DlK~myr~Qi 116 (120)
T PF12325_consen 98 VEELRADVQDLKEMYREQI 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444443
No 57
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=92.78 E-value=2.6 Score=37.91 Aligned_cols=99 Identities=23% Similarity=0.315 Sum_probs=54.4
Q ss_pred ChHHHHhcCCCCchhhHHHHHHHH---------HHHHHHhhh----------hhHHHHHHHHHHHHHH-------HHHHH
Q 023690 14 LPEEVLQVLPSDPFEQLDVARKIT---------SIAISTRVS----------DLESEHSALRSQLAEK-------DSRIA 67 (278)
Q Consensus 14 lp~eil~vLP~DP~EQLdlarkIt---------s~A~atRVs----------~LE~E~~~LR~~LaEK-------d~~i~ 67 (278)
|-++|...==+||-..|+.=.+.. -.++-.|+. ++-.+..+|-.++.++ +.+|.
T Consensus 55 l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~ 134 (190)
T PF05266_consen 55 LAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIK 134 (190)
T ss_pred HHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344444444556655555444433 123333333 3344455566666655 77777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
+|+.++..|+.+.+ .....++...+|...|..-+.+|+.++...|
T Consensus 135 ~Le~ki~el~~~~~----~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 135 ELEMKILELQRQAA----KLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777766654 3333333444666666666666666666554
No 58
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.72 E-value=1.3 Score=42.56 Aligned_cols=42 Identities=24% Similarity=0.358 Sum_probs=34.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.+.+++..||.+...|+....++.-.+.+|+.++..++..|.
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888888888888888888776
No 59
>PRK03918 chromosome segregation protein; Provisional
Probab=92.72 E-value=2 Score=44.68 Aligned_cols=6 Identities=33% Similarity=0.761 Sum_probs=2.1
Q ss_pred HHHHHH
Q 023690 68 ELQSQI 73 (278)
Q Consensus 68 ~Lq~r~ 73 (278)
+|++++
T Consensus 644 ~l~~~~ 649 (880)
T PRK03918 644 ELRKEL 649 (880)
T ss_pred HHHHHH
Confidence 333333
No 60
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.70 E-value=2 Score=41.26 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALT 102 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La 102 (278)
...||.+|++=+..|...+.++..++.+|+ +++....+++.++..+.+.+.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae 259 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE 259 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555544 333344444444444433333
No 61
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.69 E-value=4.6 Score=37.13 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
|+..+|.++..-...+..|+.+...|+..+. ..+......+..|..|...|-..+....++...|-..|-.|
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555555444444444444444444443 33444455556666666666666666666666666666554
No 62
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=92.61 E-value=0.66 Score=52.00 Aligned_cols=79 Identities=25% Similarity=0.348 Sum_probs=51.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH----------HHHH-------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLA----------EKDS-------RIAELQSQIESIYSSLS---DKLGQAQADKERLSKE 97 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~La----------EKd~-------~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E 97 (278)
--||.+++..||..+...|..|. +-+. .|.++.+++..+|..|. .-|..+..+.+-|++|
T Consensus 1196 ~gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~ 1275 (1758)
T KOG0994|consen 1196 LGAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQRE 1275 (1758)
T ss_pred chhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHH
Confidence 45889999999988888887772 1122 22223333333333333 2233444566788999
Q ss_pred HHHHHHHHHHHhhhHHHHH
Q 023690 98 NEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 98 ~~~La~TvKkL~rDvaKLE 116 (278)
.+.|-+++|.|...+.||+
T Consensus 1276 ~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1276 FNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999998888874
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.60 E-value=3.2 Score=39.42 Aligned_cols=89 Identities=18% Similarity=0.336 Sum_probs=48.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------H-------HHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------------D-------KLGQAQADKERLSKENE 99 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--------------~-------rL~~a~ee~~kL~~E~~ 99 (278)
+..++..|+.+...|...+..=+..+.+|.++...|+.++. . .|.....+++.+.++..
T Consensus 154 L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~ 233 (325)
T PF08317_consen 154 LEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELA 233 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666665555555555555555555555543 2 22223333333444444
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
.|...+..|+.++..++.-|..+..-|++-
T Consensus 234 el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 234 ELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666677777777766666553
No 64
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.57 E-value=1 Score=41.28 Aligned_cols=80 Identities=13% Similarity=0.172 Sum_probs=59.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
-+.+++...||+++.+++++.+.+.+-|+-.+ .-. ....++++.|.++.++|....+-|.-+|+|++-=
T Consensus 77 ~~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K-------~~~----e~tEer~~el~kklnslkk~~e~lr~el~k~~e~ 145 (203)
T KOG3433|consen 77 CDRKSVLQELESQLATGSQKKATLGESIENRK-------AGR----EETEERTDELTKKLNSLKKILESLRWELAKIQET 145 (203)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH-------hhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46788999999999999999988877665443 111 2455666799999999999999999999998765
Q ss_pred HHHHHhhcccc
Q 023690 119 RKTLVQSLKDD 129 (278)
Q Consensus 119 Kk~LmqSLq~d 129 (278)
+-++..-+..+
T Consensus 146 dpqv~~k~~~~ 156 (203)
T KOG3433|consen 146 DPQVFEKKVHL 156 (203)
T ss_pred CHHHHHHHHHH
Confidence 55554444433
No 65
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=92.44 E-value=2.7 Score=37.74 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=61.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 40 AISTRVSDLESEHSALRSQLA--EKDSRI-AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La--EKd~~i-~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
-+.-=+..++.|+..|+.+|. +||... ..++.|+..++..|. ---....+...+|.+|++.|-.+....-.||.
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556788999999999998 566543 344555555555554 22236778889999999999999988888888
Q ss_pred HHHHHHHHHHh
Q 023690 114 KLEVFRKTLVQ 124 (278)
Q Consensus 114 KLE~FKk~Lmq 124 (278)
.==.||-.|++
T Consensus 139 Qk~~~kn~lLE 149 (201)
T PF13851_consen 139 QKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHH
Confidence 76677666653
No 66
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=92.42 E-value=1.9 Score=39.88 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cccccCC
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS-LKDDEDA 132 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS-Lq~d~~~ 132 (278)
.++..|++...+.+.+|..++.+|+.+=-.+..+ |+.+...
T Consensus 70 kqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp 111 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLP 111 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 3445677777788888888888888887777777 7766653
No 67
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=92.37 E-value=7.4 Score=34.37 Aligned_cols=100 Identities=20% Similarity=0.246 Sum_probs=53.7
Q ss_pred CCchhhHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 023690 24 SDPFEQLDVARKITSIAIS---TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSK 96 (278)
Q Consensus 24 ~DP~EQLdlarkIts~A~a---tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~ 96 (278)
.||..-|+.+++=...+|. .-|...-+....|..++.+-...+.++++++ +.+|. +.-+.++.++..+..
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A---~~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA---ELALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 3677777766655433332 2233333344444555555555555555444 33344 444566666666666
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
+...|..++..+...|.+|+..-+.|-..|
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl 128 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKL 128 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666655544444443
No 68
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=92.36 E-value=1.8 Score=46.46 Aligned_cols=91 Identities=20% Similarity=0.315 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH------------HHHHH
Q 023690 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERL------------SKENE 99 (278)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL------------~~E~~ 99 (278)
|++.-||++- -+-|+|+..|+++|..--..-..+++||+.||.+|. -.|+.+.+|+++. .+.+.
T Consensus 10 kvaeeav~gw-ekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~~ 88 (769)
T PF05911_consen 10 KVAEEAVSGW-EKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIKS 88 (769)
T ss_pred HHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5666677654 366899999999999888888899999999999998 6677777776433 23344
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 100 ALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
.|...+-.++..++++.+=-.+|-.+|
T Consensus 89 ~le~~l~e~~~~l~~~~~e~~~l~~~l 115 (769)
T PF05911_consen 89 ELEAKLAELSKRLAESAAENSALSKAL 115 (769)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 555555555555555444333333333
No 69
>PRK02224 chromosome segregation protein; Provisional
Probab=92.35 E-value=2.8 Score=43.97 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=6.2
Q ss_pred CchhhHHHHHHHH
Q 023690 25 DPFEQLDVARKIT 37 (278)
Q Consensus 25 DP~EQLdlarkIt 37 (278)
+|-+-.++-.+|.
T Consensus 147 ~p~~R~~ii~~l~ 159 (880)
T PRK02224 147 TPSDRQDMIDDLL 159 (880)
T ss_pred CHHHHHHHHHHHh
Confidence 4444444444444
No 70
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.30 E-value=6 Score=33.38 Aligned_cols=74 Identities=24% Similarity=0.386 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL---TNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L---a~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
+.+|-..|.-++-.+..|+.++..|+.+=. .+.++..+|.++++.+ ...+..|.+++..|+.==.++++=|++
T Consensus 18 ve~L~s~lr~~E~E~~~l~~el~~l~~~r~----~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 18 VERLQSQLRRLEGELASLQEELARLEAERD----ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344555555566666666666666665554 6667777777777544 455666666666666655566665555
Q ss_pred c
Q 023690 129 D 129 (278)
Q Consensus 129 d 129 (278)
-
T Consensus 94 K 94 (120)
T PF12325_consen 94 K 94 (120)
T ss_pred h
Confidence 4
No 71
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=92.25 E-value=2.5 Score=37.66 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
.++.++..|..++.+....|.+|++++..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555566665555554
No 72
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=92.19 E-value=1.4 Score=44.90 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=36.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG----QAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~----~a~ee~~kL~~E~~~La~TvKkL 108 (278)
-|..+|..|+.|+..|..+=..=.+++..|++|-..++..++.+|. +..++..+|++|+..|...+-.|
T Consensus 63 Tlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l 135 (472)
T TIGR03752 63 TLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL 135 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666555444445566777777777777763322 22333444444444444443333
No 73
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=92.12 E-value=4 Score=35.91 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=59.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (278)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (278)
|-||.+..-.. +....+-.|..+...|..+...+.+.-...+.++..+|..+...-+.....+..|+.++..|...+|.
T Consensus 36 E~Le~~~~~n~-~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 36 ELLESLASRNQ-EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred HHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 56665544333 44455556666666666666555555555666777777777655567777778888888888877777
Q ss_pred HhhhHHHHHHHH
Q 023690 108 LQRDVSKLEVFR 119 (278)
Q Consensus 108 L~rDvaKLE~FK 119 (278)
+.-.+++|+.=.
T Consensus 115 ~~~q~~rlee~e 126 (158)
T PF09744_consen 115 LSDQSSRLEERE 126 (158)
T ss_pred hhhhccccchhH
Confidence 777777776433
No 74
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.06 E-value=2.7 Score=43.56 Aligned_cols=39 Identities=13% Similarity=0.337 Sum_probs=15.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.++...+.|...|.+....=......|++++..|+.+|.
T Consensus 143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~ 181 (546)
T PF07888_consen 143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELE 181 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344343334333333333333333444444444444443
No 75
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.96 E-value=2.1 Score=44.65 Aligned_cols=41 Identities=20% Similarity=0.423 Sum_probs=21.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
++.+|...+|..+..|...+.+|+.+|..|+.....|-..+
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555554443
No 76
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=91.89 E-value=6.7 Score=39.56 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=47.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL--- 115 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL--- 115 (278)
.+|++.+|.|+..-|..-..-+. ..++.++.++-+.- ++|..-...+.-|.+|+.+|-.+||.|..|...|
T Consensus 219 ksr~~k~eee~aaERerglqtea---qvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pN 295 (561)
T KOG1103|consen 219 KSRTKKGEEEAAAERERGLQTEA---QVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPN 295 (561)
T ss_pred ccccCCChHHHHHHHhhccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcc
Confidence 36777788777665553332222 22223333332221 5555666667778889999999999999988776
Q ss_pred HHHHH
Q 023690 116 EVFRK 120 (278)
Q Consensus 116 E~FKk 120 (278)
|.+|+
T Consensus 296 eqLk~ 300 (561)
T KOG1103|consen 296 EQLKG 300 (561)
T ss_pred ccccC
Confidence 45655
No 77
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=91.85 E-value=0.86 Score=48.14 Aligned_cols=56 Identities=32% Similarity=0.452 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS---SLSDKLGQAQADKERLSKENEALT 102 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~---~l~~rL~~a~ee~~kL~~E~~~La 102 (278)
+||+|+.+||..|.--...-.||+.+++.|+. .+..-|.+..++|+.|+.....|.
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~ 480 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV 480 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999888888999999766654 333445566666666665444443
No 78
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=91.79 E-value=2 Score=37.32 Aligned_cols=33 Identities=30% Similarity=0.519 Sum_probs=30.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (278)
+...++..++.|...|+.+|.+.+..|.+|+..
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~~ 49 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKKS 49 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999874
No 79
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=91.67 E-value=3.8 Score=39.39 Aligned_cols=77 Identities=16% Similarity=0.258 Sum_probs=35.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDS----RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~----~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
+..|...|+.|+..||+.-.|.+. ....|++++..+. .++....++-..+..++..|+-++..++
T Consensus 177 l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~-----------~ei~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 177 LRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLL-----------QEIMIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555554444322 3444444444443 3344444444444444445555555555
Q ss_pred HHHHHHHhhccc
Q 023690 117 VFRKTLVQSLKD 128 (278)
Q Consensus 117 ~FKk~LmqSLq~ 128 (278)
.-|..+...|++
T Consensus 246 ~~k~e~~~~I~~ 257 (312)
T smart00787 246 NKKSELNTEIAE 257 (312)
T ss_pred HHHHHHHHHHHH
Confidence 555555444444
No 80
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=91.63 E-value=4.8 Score=30.58 Aligned_cols=84 Identities=21% Similarity=0.346 Sum_probs=56.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd-----~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
-..+..++..|+.+...+...+.... ..+...+.-+..|+..+. ....+...+.++...+-..+....+++
T Consensus 14 ~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~----~~~~~~~~~~~~~~~~r~~l~~a~~~~ 89 (123)
T PF02050_consen 14 LQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQ----QQQQELERLEQEVEQAREELQEARRER 89 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777776666 555555555555555444 777788888888888888899999999
Q ss_pred HHHHHHHHHHHhh
Q 023690 113 SKLEVFRKTLVQS 125 (278)
Q Consensus 113 aKLE~FKk~LmqS 125 (278)
.+||.++-.-...
T Consensus 90 k~~e~L~e~~~~~ 102 (123)
T PF02050_consen 90 KKLEKLKERRREE 102 (123)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998887654433
No 81
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.53 E-value=5.3 Score=41.15 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=42.6
Q ss_pred ChHHHHhcCCCCchhhHHHHHHH---------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 14 LPEEVLQVLPSDPFEQLDVARKI---------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 14 lp~eil~vLP~DP~EQLdlarkI---------ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|-+.|-.+|==+.+++|.-=-.+ ....+..++..||.++..+..++.+..+.+..++.++..++..+.
T Consensus 171 l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 171 LKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666667776421111 133556677777878777777777777777777666666666654
No 82
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.51 E-value=7.5 Score=36.38 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=24.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
...+..++..|+.++..++.++..-.+.+..++.++..++..+
T Consensus 139 ~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 139 KSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666666666666655555555555555444444
No 83
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=91.50 E-value=0.99 Score=35.84 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=32.4
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 72 QIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 72 r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
++-.|+..|. +|.....+++.||..||.-|..-|..|...
T Consensus 24 ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 24 EILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555 788899999999999999999999988654
No 84
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=91.31 E-value=0.36 Score=44.20 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=32.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (278)
-|.+.+.++|.||..||+-|+-|++|..||..|+-
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKLG 82 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKLG 82 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 68889999999999999999999999999988763
No 85
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=91.25 E-value=2.6 Score=49.28 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=73.0
Q ss_pred hhHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 023690 28 EQLDVARKITS-----IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (278)
Q Consensus 28 EQLdlarkIts-----~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~ 99 (278)
|.++++-.|.. .++...=.+||.+|..|...|+|......-..+|+..+...+. .-|..-.+.+.+|...|.
T Consensus 1696 e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~ 1775 (1930)
T KOG0161|consen 1696 ELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKK 1775 (1930)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44555555553 4566777789999999999999999999999999998888777 788888899999999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 023690 100 ALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 100 ~La~TvKkL~rDvaKLE 116 (278)
+|..+||.|.-.+..+|
T Consensus 1776 ~LE~~~kdLq~rL~e~E 1792 (1930)
T KOG0161|consen 1776 SLERQVKDLQLRLDEAE 1792 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998876655544
No 86
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=91.23 E-value=2 Score=45.60 Aligned_cols=65 Identities=18% Similarity=0.263 Sum_probs=40.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
..++..||..|..+......+|.+-.+.+..|+++...|. +|+..+.+.+++|.+.-+.+.+.+.
T Consensus 560 r~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La----eR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA----ERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5567777777777777666666666666666665555544 4555666666666665555544443
No 87
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=91.18 E-value=8.8 Score=35.60 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=10.1
Q ss_pred HHHHHHHHH---HHHHHHHHHHHH
Q 023690 61 EKDSRIAEL---QSQIESIYSSLS 81 (278)
Q Consensus 61 EKd~~i~~L---q~r~s~le~~l~ 81 (278)
||.+|..+| ..-++.||..+.
T Consensus 47 Er~~h~eeLrqI~~DIn~lE~iIk 70 (230)
T PF10146_consen 47 ERMAHVEELRQINQDINTLENIIK 70 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555544 344444554443
No 88
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.14 E-value=8.8 Score=34.93 Aligned_cols=41 Identities=15% Similarity=0.270 Sum_probs=20.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.-.|+.++..|...|.+.+..-.+.+..|+.....++..+.
T Consensus 40 sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 40 SQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555554444443
No 89
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=91.10 E-value=8.7 Score=34.95 Aligned_cols=50 Identities=14% Similarity=0.152 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (278)
Q Consensus 29 QLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~ 79 (278)
+++-+.+.....+..+. ....++..+-++-.+-.+.|..|++++..|+..
T Consensus 22 ~~~~~~~~~~~~~~~~~-~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~ 71 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQ-QSQKRIDQWDDEKQELLAEYRQLEREIENLEVY 71 (251)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433333332 222334444444444444444444444444443
No 90
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=91.02 E-value=2.6 Score=41.33 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=28.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
.+..++..||.++..|+....++.-.+.+|++++..++..+
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 44566777777777777777666666666666666666665
No 91
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.99 E-value=5.8 Score=34.22 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=62.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
-+|.-|...|..++.||...+..|+.++..-=..|. .+|.....++..|..+.......+.++..++.+++.=+..+
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999988876666666 88888888888888888888888888888877766554444
Q ss_pred Hh
Q 023690 123 VQ 124 (278)
Q Consensus 123 mq 124 (278)
-.
T Consensus 125 ~~ 126 (177)
T PF13870_consen 125 RK 126 (177)
T ss_pred HH
Confidence 33
No 92
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=90.94 E-value=3.5 Score=44.47 Aligned_cols=73 Identities=22% Similarity=0.279 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIES-----------IYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~-----------le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
+.+|+.++.|+...++.+..|..- .+.-|+ ..+-+++|+++.|..|-+.+.+++-.++++-.||-+
T Consensus 165 ~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~ 244 (916)
T KOG0249|consen 165 TRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRT 244 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666555544321 122233 456688999999999999999999999998888888
Q ss_pred HHHHHHh
Q 023690 118 FRKTLVQ 124 (278)
Q Consensus 118 FKk~Lmq 124 (278)
|+-.|.+
T Consensus 245 d~E~Lr~ 251 (916)
T KOG0249|consen 245 DIEDLRG 251 (916)
T ss_pred hHHHHHH
Confidence 8766654
No 93
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=90.91 E-value=2.6 Score=42.15 Aligned_cols=78 Identities=18% Similarity=0.276 Sum_probs=50.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL---------------------SDKLGQAQADKERLSKEN 98 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l---------------------~~rL~~a~ee~~kL~~E~ 98 (278)
+...+|..|+.++..|+.++++-+..+..++.++.-|+.-- .+-+....++..+|..+.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777888888888777777777777776665555432 022223345566777777
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 023690 99 EALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~ 117 (278)
..|...+++|++.+++|+.
T Consensus 148 ~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 148 REAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777744
No 94
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.91 E-value=3.9 Score=37.82 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=47.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-------LSKENEALTNTVRKLQ 109 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~k-------L~~E~~~La~TvKkL~ 109 (278)
-|--|+..+|.+....+..|.+....|..|+++...++.+-. .+...+.+++.. ..+|+..|+.-+..+.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888999999888888888888888777766555433 333344444433 3456666666666666
Q ss_pred hhHHHHHH
Q 023690 110 RDVSKLEV 117 (278)
Q Consensus 110 rDvaKLE~ 117 (278)
..+++|+.
T Consensus 89 ~~i~~l~e 96 (246)
T PF00769_consen 89 AEIARLEE 96 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 95
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=90.83 E-value=4.4 Score=31.38 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL 108 (278)
...++|.+|..|+......++.|
T Consensus 43 ~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 43 ELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555444444
No 96
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=90.73 E-value=9.5 Score=39.07 Aligned_cols=45 Identities=31% Similarity=0.495 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh---------HHHHHHHHHHHHhhc
Q 023690 82 DKLGQAQADKERLSKENEALTNTV--------RKLQRD---------VSKLEVFRKTLVQSL 126 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~Tv--------KkL~rD---------vaKLE~FKk~LmqSL 126 (278)
.++....+-..+|..+-.+|++.+ ...|+. =.+|+.|++.|-+.-
T Consensus 99 ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 99 DKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 556666666677777777777643 112221 135778888775443
No 97
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=90.71 E-value=2 Score=44.56 Aligned_cols=30 Identities=13% Similarity=0.246 Sum_probs=21.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 102 a~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
......|+|++.-.+..=..|++.+++-.-
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~ 404 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAAS 404 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667778887777777778877776543
No 98
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.65 E-value=1.5 Score=41.91 Aligned_cols=57 Identities=28% Similarity=0.442 Sum_probs=42.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (278)
.++..+|.++...+.+|.++...+.+|++++..|+.++. .+..++.+|+.+......
T Consensus 221 ~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~----~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 221 QKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYE----EAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 567777888888888888888888888888888887776 566666666665544433
No 99
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.47 E-value=5.9 Score=43.73 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 023690 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (278)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (278)
.....+...|.+....|.+.++.+.+++.++..-...+.+
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555566666666666666666666554444443
No 100
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=90.45 E-value=2.9 Score=43.97 Aligned_cols=96 Identities=22% Similarity=0.251 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHH--------HHhhhhhHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 29 QLDVARKITSIAI--------STRVSDLESEHSALRSQLAEK------D--SRIAELQSQIESIYSSLSDKLGQAQADKE 92 (278)
Q Consensus 29 QLdlarkIts~A~--------atRVs~LE~E~~~LR~~LaEK------d--~~i~~Lq~r~s~le~~l~~rL~~a~ee~~ 92 (278)
+.+++.|+.-.-+ -+|+-.||.|++.||.+++.- + ..|+.+...+...|..++--.........
T Consensus 227 dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~ 306 (629)
T KOG0963|consen 227 DEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEA 306 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4556666653222 258888999999999988621 1 23444555555555555433334444556
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 023690 93 RLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (278)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (278)
-|++|+....++|.+|++.+.....-...|-.
T Consensus 307 S~~~e~e~~~~qI~~le~~l~~~~~~leel~~ 338 (629)
T KOG0963|consen 307 SLVEEREKHKAQISALEKELKAKISELEELKE 338 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777888888877777664444433333
No 101
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=90.44 E-value=3.1 Score=46.20 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
..|..++...++-.+-|++.|.+||..-..|-..+
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666667777777788888877544444433
No 102
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.40 E-value=5 Score=41.98 Aligned_cols=93 Identities=16% Similarity=0.299 Sum_probs=57.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR--------- 106 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvK--------- 106 (278)
++..+|...|+...++|+..+..=..-+.++..+-..++..|. .-+....+++++|+++++.|-+.|.
T Consensus 255 ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dv 334 (581)
T KOG0995|consen 255 EKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDV 334 (581)
T ss_pred hcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3344555555555555555444444444444444444444333 3344888999999999999988875
Q ss_pred --------HHhhhHHHHHHHHHHHHhhcccccC
Q 023690 107 --------KLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 107 --------kL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
+|.|+|.+++.=+-.|++.+-+-+.
T Consensus 335 e~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 335 ERMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4667777776666677777666555
No 103
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=90.36 E-value=8.2 Score=31.06 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
..++.+|..+...|..-+.+|...|.++..|+.-|
T Consensus 80 ~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~Y~~fL 114 (126)
T PF13863_consen 80 EAEIKKLKAELEELKSEISKLEEKLEEYKKYEEFL 114 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333
No 104
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=90.35 E-value=3.5 Score=44.02 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=61.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ-------IESIYSSLS----------DKLGQAQADKERLSKENEALT 102 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r-------~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La 102 (278)
.|..|+..||.|+..+|..+......+..|... ...+|.+.. -|=...++|...|.+||=+|.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 578899999999999999988655555444333 333333332 222344677788999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
.+|-.|...=--+|.|| +=+..|.||.+
T Consensus 111 Kqvs~Lk~sQvefE~~K-hei~rl~Ee~~ 138 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLK-HEIKRLEEEIE 138 (717)
T ss_pred HHHHHHHHhHHHHHHHH-HHHHHHHHHHH
Confidence 88888877777777774 44455555543
No 105
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=90.21 E-value=3.1 Score=44.75 Aligned_cols=60 Identities=28% Similarity=0.387 Sum_probs=44.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~L 101 (278)
..++..+.+|...|...|.+|+..|.+|.+.-+..|..+. .||..+.-+|.-|.=|--.|
T Consensus 98 ~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 98 SKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566667777888889999999999999999998776 66666666666555544444
No 106
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.12 E-value=2.4 Score=40.30 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=51.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (278)
-++.+...+-.|-..|+..|.+++....++|+|+..|+.+.. ...++..+|-.|-..|......|.-.|.-+|.|.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s----~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS----RLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 456677777778888888888888888888888888777775 4455555555555555555555555555555553
No 107
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=90.11 E-value=4.1 Score=37.27 Aligned_cols=63 Identities=17% Similarity=0.253 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
..|+.|++.||.-+.+=++....|..+...+|.+-+ +++....++|.+|..|.+-|....+-|
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL 128 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKEL 128 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHH
Confidence 345566666666666555666666666666666555 555555555555555555555555544
No 108
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=90.11 E-value=4.4 Score=39.28 Aligned_cols=90 Identities=24% Similarity=0.356 Sum_probs=52.7
Q ss_pred chhhHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 023690 26 PFEQLDVARKITSIAIST---RVSDLESEHSALRSQLAEK-DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE---- 97 (278)
Q Consensus 26 P~EQLdlarkIts~A~at---RVs~LE~E~~~LR~~LaEK-d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E---- 97 (278)
|..|=+|++|=.---|+- |+..=|.||..||.||+-. +.-|+|= --..|++|. ||+|+.|+.+|..-
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE---CHRVEAQLA--LKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEE---CHRVEAQLA--LKEARKEIKQLKQVIETM 136 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 567888888765544443 3333356666666666632 2333222 222345554 78999999888764
Q ss_pred HHHHHHHHH-------HHhhhHHHHHHHHH
Q 023690 98 NEALTNTVR-------KLQRDVSKLEVFRK 120 (278)
Q Consensus 98 ~~~La~TvK-------kL~rDvaKLE~FKk 120 (278)
|++|+..=| ..|-+--|||+|=+
T Consensus 137 rssL~ekDkGiQKYFvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 137 RSSLAEKDKGIQKYFVDINIQNKKLESLLQ 166 (305)
T ss_pred HhhhchhhhhHHHHHhhhhhhHhHHHHHHH
Confidence 455555433 34456678998854
No 109
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.10 E-value=3.4 Score=46.04 Aligned_cols=76 Identities=4% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 40 AISTRVSDLESEHSALRSQLAEK--DSRIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEK--d~~i~~Lq~r~s~le~~l~--------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
++...+..++.+...|+..|.-+ ...+.+++.++..|+.++. .-+....++.+.|..++..|..++++|.
T Consensus 1002 ~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606 1002 LMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444455555444 5555566666666665554 2333444444445544444445555555
Q ss_pred hhHHHH
Q 023690 110 RDVSKL 115 (278)
Q Consensus 110 rDvaKL 115 (278)
.+|+.|
T Consensus 1082 ~qi~~l 1087 (1311)
T TIGR00606 1082 KEIKHF 1087 (1311)
T ss_pred HHHHHH
Confidence 554443
No 110
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=90.06 E-value=4.7 Score=44.46 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.+|.++.+.|...+.++..++.++
T Consensus 887 ~~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 887 EELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 111
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=90.06 E-value=4.9 Score=40.57 Aligned_cols=60 Identities=17% Similarity=0.305 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+...+..++++...|.+-+++...|+.+|. ..+.++..|..+....++++++++++++-+
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk----~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~ 99 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLK----SLETEIASLEAQLIETADDLKKLRKQIADL 99 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHhhHHHH
Confidence 444444555555555555555555554443 444444444444444444444444444433
No 112
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=90.05 E-value=5.8 Score=33.04 Aligned_cols=61 Identities=30% Similarity=0.350 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 48 LE~E~~~LR~~La-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
|=.|-..||.+.. =|...| +=|.+...|...|. ...+..-++..|+++|.-.=..|.+-|+
T Consensus 3 la~eYsKLraQ~~vLKKaVi-eEQ~k~~~L~e~Lk----~ke~~LRk~eqE~dSL~FrN~QL~kRV~ 64 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVI-EEQAKNAELKEQLK----EKEQALRKLEQENDSLTFRNQQLTKRVE 64 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666 333444 33456666665554 4444444555555555444444444443
No 113
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=90.00 E-value=4.3 Score=32.25 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (278)
|=.+-..|+.+|.+|+++|..|..-+.+|...|+ .-.+-+.+|+.+...+..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLi----KYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLI----KYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 4456789999999999999988877777776665 777777777777776655
No 114
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.86 E-value=2.7 Score=32.25 Aligned_cols=55 Identities=24% Similarity=0.415 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHH
Q 023690 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL----EVFRKT 121 (278)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL----E~FKk~ 121 (278)
+..|..|+.++..++..+. ....++..|..||+..+..+-....+..+| |.+|+.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~----~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNS----VHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678899999999987776 788889999999999888888777776665 455554
No 115
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=89.75 E-value=1.8 Score=40.13 Aligned_cols=71 Identities=24% Similarity=0.392 Sum_probs=44.0
Q ss_pred HHHhhhhhHH------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 41 ISTRVSDLES------EHSALRSQLAE---KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 41 ~atRVs~LE~------E~~~LR~~LaE---Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
+-.+.-.|++ +...||.++.. ..+.+..+.+....|+.+++ ....+.+++++.+++|..++..++++
T Consensus 119 ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~----~~~~~Le~~~~~~~al~Kq~e~~~~E 194 (216)
T KOG1962|consen 119 LLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELE----KKQKKLEKAQKKVDALKKQSEGLQDE 194 (216)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcccH
Confidence 4445555555 56666666653 23445555555555555554 56666677777777777777777777
Q ss_pred HHHH
Q 023690 112 VSKL 115 (278)
Q Consensus 112 vaKL 115 (278)
.++|
T Consensus 195 ydrL 198 (216)
T KOG1962|consen 195 YDRL 198 (216)
T ss_pred HHHH
Confidence 7776
No 116
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=89.71 E-value=1.6 Score=46.16 Aligned_cols=56 Identities=29% Similarity=0.477 Sum_probs=42.3
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 55 LRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 55 LR~~La----EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
||+||. ||++++..+.+++..+.......|.....+.++|+.||.-|.+-+|.+..
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554 78888888888888888777766667777777888888888877776654
No 117
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=89.63 E-value=18 Score=33.88 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=22.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.+..+...+++++..|+.++..-...|..++.++..++.++.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~ 175 (423)
T TIGR01843 134 LFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLE 175 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555554
No 118
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=89.58 E-value=5.5 Score=33.17 Aligned_cols=74 Identities=23% Similarity=0.372 Sum_probs=63.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
||+=-++|=+.+.-||.-+-|=.....+|.+.+-.-|.+|. ...+|+.-|.=-|+.|...|-.|+-++...+..
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LR----k~eqE~dSL~FrN~QL~kRV~~LQ~El~~~~~~ 76 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALR----KLEQENDSLTFRNQQLTKRVEVLQEELEESEQK 76 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34556788889999999999888888999999999998776 899999999999999999999999998855443
No 119
>PRK02119 hypothetical protein; Provisional
Probab=89.56 E-value=2.3 Score=32.82 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 023690 66 IAELQSQIESIYSSL 80 (278)
Q Consensus 66 i~~Lq~r~s~le~~l 80 (278)
+..|++|+..||..+
T Consensus 4 ~~~~e~Ri~~LE~rl 18 (73)
T PRK02119 4 QQNLENRIAELEMKI 18 (73)
T ss_pred hHHHHHHHHHHHHHH
Confidence 344555555555443
No 120
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=89.25 E-value=8.6 Score=42.27 Aligned_cols=42 Identities=29% Similarity=0.460 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHhh
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQRDVSK-----------LEVFRKTLVQS 125 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaK-----------LE~FKk~LmqS 125 (278)
|..+.+.+.++.++|.+|..+|.+|.|.... ||.||+.|...
T Consensus 454 le~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l 506 (980)
T KOG0980|consen 454 LESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALL 506 (980)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3445555566777777777777776665443 56666655443
No 121
>PRK12704 phosphodiesterase; Provisional
Probab=89.25 E-value=12 Score=38.43 Aligned_cols=13 Identities=8% Similarity=0.388 Sum_probs=7.3
Q ss_pred HHHHHHHhhcccc
Q 023690 117 VFRKTLVQSLKDD 129 (278)
Q Consensus 117 ~FKk~LmqSLq~d 129 (278)
..|+.||..+.++
T Consensus 154 ea~~~l~~~~~~~ 166 (520)
T PRK12704 154 EAKEILLEKVEEE 166 (520)
T ss_pred HHHHHHHHHHHHH
Confidence 3466666665554
No 122
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=89.12 E-value=2.1 Score=32.38 Aligned_cols=48 Identities=15% Similarity=0.374 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
.++++++..+|..+ ....++..+|..-...+...++.++.++.+|+.=
T Consensus 2 ~~i~e~l~~ie~~l----~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n 49 (71)
T PF10779_consen 2 QDIKEKLNRIETKL----DNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN 49 (71)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666555333 3555566666666666666777788888777653
No 123
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.08 E-value=4.8 Score=41.72 Aligned_cols=63 Identities=24% Similarity=0.429 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
.-+.+|...+.+|+.+|..|+++...|-.++. .-...-.+|.++|.+|.+-.--..-+|.+.|
T Consensus 330 g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 34778888889999999999999999998887 5566667777777777766666666665554
No 124
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.95 E-value=8 Score=43.23 Aligned_cols=43 Identities=12% Similarity=0.184 Sum_probs=28.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
..|..++..|..++..|+..+.+.+..|..|+..+..++..+.
T Consensus 884 ~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1311)
T TIGR00606 884 QQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKE 926 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 4455666666666666666666666666666666666666664
No 125
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=88.94 E-value=3.1 Score=48.48 Aligned_cols=48 Identities=29% Similarity=0.488 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER 93 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~k 93 (278)
-+|.+||++|+..|.+|+++|++|..++..+...++.+|.....++..
T Consensus 1310 ~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~ 1357 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKAN 1357 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999999999999999988886655444444444333
No 126
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.92 E-value=6.7 Score=42.26 Aligned_cols=72 Identities=32% Similarity=0.391 Sum_probs=41.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|.-.+-..|-+++..||..|.+|...+...+..+..++.++. +.+.....++..|++..++|..+++.=.
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd 412 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD 412 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455556666677777766666666666666555555544 3444455555566666666665555433
Q ss_pred hh
Q 023690 110 RD 111 (278)
Q Consensus 110 rD 111 (278)
+.
T Consensus 413 ~q 414 (775)
T PF10174_consen 413 RQ 414 (775)
T ss_pred HH
Confidence 33
No 127
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=88.89 E-value=6.8 Score=35.02 Aligned_cols=34 Identities=29% Similarity=0.494 Sum_probs=30.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
.|..-+.++|.||..||+-|+-|.++.++|+.|+
T Consensus 33 eLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 33 ELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4555678899999999999999999999999885
No 128
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=88.89 E-value=2.7 Score=40.92 Aligned_cols=83 Identities=19% Similarity=0.241 Sum_probs=61.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV----SKLE 116 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv----aKLE 116 (278)
.+.|+.+||.-|..= -.|....++.|.+..+.++.-+ .|+..-.|+.+||+.-|.-|-+-|+|+.-|| .||+
T Consensus 3 ~k~~~~~~~~~i~k~---nee~~~~~~~~~k~~e~~qkl~-sr~~~~~ekke~i~r~n~k~~d~v~~~~~~~~~~~erl~ 78 (359)
T KOG4398|consen 3 CKMRIEQLKQTICKG---NEEMEKNSEGLLKTKEKNQKLY-SRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLA 78 (359)
T ss_pred hhHHHHHHHHHHhcC---cHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHH
Confidence 456666666655433 3355556666666665555433 6888999999999999999999999988774 7999
Q ss_pred HHHHHHHhhcc
Q 023690 117 VFRKTLVQSLK 127 (278)
Q Consensus 117 ~FKk~LmqSLq 127 (278)
+++++-++-|-
T Consensus 79 ~lr~shi~el~ 89 (359)
T KOG4398|consen 79 NLRRSHILELT 89 (359)
T ss_pred HHHHHHHHHHH
Confidence 99999877653
No 129
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.87 E-value=13 Score=38.07 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=7.1
Q ss_pred HHHHHHhhcccc
Q 023690 118 FRKTLVQSLKDD 129 (278)
Q Consensus 118 FKk~LmqSLq~d 129 (278)
.|..||..+.++
T Consensus 149 ak~~l~~~~~~~ 160 (514)
T TIGR03319 149 AKEILLEEVEEE 160 (514)
T ss_pred HHHHHHHHHHHH
Confidence 466666665554
No 130
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=88.81 E-value=1.9 Score=32.27 Aligned_cols=39 Identities=28% Similarity=0.496 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
|.+|+.++..++..+. ....++.+|.++.+.|..+||+|
T Consensus 2 i~elEn~~~~~~~~i~----tvk~en~~i~~~ve~i~envk~l 40 (55)
T PF05377_consen 2 IDELENELPRIESSIN----TVKKENEEISESVEKIEENVKDL 40 (55)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556655555443 44444444444444444444433
No 131
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=88.77 E-value=4.8 Score=34.46 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE-----ALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~-----~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
|+..+.+|++++..+|.+|+ +..-+..++.+|.. .+.+--...+...++++..|+.|.+-|..
T Consensus 18 K~~l~~~l~~~i~~~d~el~----QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~q 85 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQ----QLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQ 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888887 55555566666654 44444466667777777777777665543
No 132
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.77 E-value=2.2 Score=34.77 Aligned_cols=59 Identities=19% Similarity=0.365 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESI--YSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~l--e~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
++..|.+.+.+-++.+..|+.++..| ...+. ...-+..++..+-+.|..+++-+++.+.
T Consensus 36 ~~~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~----~L~l~l~el~G~~~~l~~~l~~v~~~~~ 96 (106)
T PF10805_consen 36 DIEKLEERLDEHDRRLQALETKLEHLPTRDDVH----DLQLELAELRGELKELSARLQGVSHQLD 96 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443333333 22221 3333334444444444444444444443
No 133
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=88.59 E-value=8.1 Score=37.18 Aligned_cols=86 Identities=17% Similarity=0.185 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 44 RVs~LE~E~~~LR~~La-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
+|-.|+.++..|+.+|. |....+..++..+..+...+. .|....++..+-..+-.........|.||+.--+..=..|
T Consensus 283 ~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~-~l~~~l~~~~~~~~~l~~~~~~~~~L~r~~~~~~~~y~~l 361 (444)
T TIGR03017 283 QYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREA-ELREALENQKAKVLELNRQRDEMSVLQRDVENAQRAYDAA 361 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777888887776 344444445444444333332 2222222222112223333456778889998888888888
Q ss_pred Hhhccccc
Q 023690 123 VQSLKDDE 130 (278)
Q Consensus 123 mqSLq~d~ 130 (278)
++.+++-.
T Consensus 362 l~r~~e~~ 369 (444)
T TIGR03017 362 MQRYTQTR 369 (444)
T ss_pred HHHHHHHH
Confidence 88876644
No 134
>PRK09039 hypothetical protein; Validated
Probab=88.48 E-value=16 Score=35.36 Aligned_cols=6 Identities=0% Similarity=0.174 Sum_probs=2.8
Q ss_pred cccccc
Q 023690 188 FVLASQ 193 (278)
Q Consensus 188 ~~~t~~ 193 (278)
+.+..|
T Consensus 265 I~I~GH 270 (343)
T PRK09039 265 LRVDGH 270 (343)
T ss_pred EEEEEe
Confidence 344455
No 135
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.37 E-value=6.5 Score=38.59 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=54.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHH
Q 023690 43 TRVSDLESEHSALRSQLAEKD--------------SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE---ALT 102 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd--------------~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~---~La 102 (278)
-+|-.|..+++.|+.++.+-- ....+|+.++..++.++. .++....++.+++..+-. .+.
T Consensus 275 P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVE 354 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 356677777777777765421 123445555555555554 344444444455544443 355
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhccccc
Q 023690 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (278)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (278)
.....|+||+.-.+..=..|++.+++-.
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~eea~ 382 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRESAE 382 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777899999888888788888776543
No 136
>PRK04406 hypothetical protein; Provisional
Probab=88.37 E-value=3.5 Score=32.06 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 023690 66 IAELQSQIESIYSSLS 81 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~ 81 (278)
|..|++|+..||..+.
T Consensus 6 ~~~le~Ri~~LE~~lA 21 (75)
T PRK04406 6 IEQLEERINDLECQLA 21 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4456666666665444
No 137
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=88.32 E-value=21 Score=33.06 Aligned_cols=83 Identities=14% Similarity=0.257 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----------HHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----D-----------KLGQAQADKERLSKENEALTNT----VRKL 108 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----~-----------rL~~a~ee~~kL~~E~~~La~T----vKkL 108 (278)
+..++..+..+++..+..+..+++++..+...++ + .-+.+.+..+.++.|.+.|.++ +..|
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAAL 212 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3445666666666666666666666666666555 1 2344444444444444444444 4444
Q ss_pred h----hhHHHHHHHHHHHHhhccccc
Q 023690 109 Q----RDVSKLEVFRKTLVQSLKDDE 130 (278)
Q Consensus 109 ~----rDvaKLE~FKk~LmqSLq~d~ 130 (278)
+ ...+.|...+...+...+.++
T Consensus 213 ~~~~~~~~~~l~~~~~~~~a~~~~~~ 238 (301)
T PF14362_consen 213 DAQIAARKARLDEARQAKVAEFQAII 238 (301)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4 555566666666555544443
No 138
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=88.29 E-value=3.8 Score=36.58 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHH
Q 023690 95 SKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 95 ~~E~~~La~TvKkL~rDvaKL 115 (278)
...|+.|.+-+.||..|+.+|
T Consensus 94 ~~~N~~L~~dl~klt~~~~~l 114 (182)
T PF15035_consen 94 RKANEALQEDLQKLTQDWERL 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666653
No 139
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=88.23 E-value=5.3 Score=41.66 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=18.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+...+..++.|+..|+..+.+-..++.+.+.....+|.++.
T Consensus 340 l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 340 LESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444
No 140
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=88.18 E-value=3.4 Score=31.28 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=8.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 104 TVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
+|...++++.+|+.--+.|..-|.+
T Consensus 26 ~v~~Qq~~I~~L~~~l~~L~~rl~~ 50 (69)
T PF04102_consen 26 VVTEQQRQIDRLQRQLRLLRERLRE 50 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444433444444433
No 141
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=88.17 E-value=7.7 Score=34.97 Aligned_cols=79 Identities=19% Similarity=0.331 Sum_probs=50.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHH-----HHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DK---LGQA-----QADKERLSKENEALTNTVR 106 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~r---L~~a-----~ee~~kL~~E~~~La~TvK 106 (278)
...+..-+.....|++.||.+|-.....+.+++.++-..+.+|. +. |... +.+..+|+.+-+.+...+.
T Consensus 56 e~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~ 135 (194)
T PF15619_consen 56 EAELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQ 135 (194)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHH
Confidence 45566778888899999999998888888888888888888776 22 2221 1233455555555555444
Q ss_pred HHhhhHHHHH
Q 023690 107 KLQRDVSKLE 116 (278)
Q Consensus 107 kL~rDvaKLE 116 (278)
.-.+.+..||
T Consensus 136 ~~~~ki~~Le 145 (194)
T PF15619_consen 136 EKEKKIQELE 145 (194)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 142
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.10 E-value=12 Score=35.85 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=24.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
..-+..++.|+..|.+.-.+..+++.+|++....|+.++.
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666666666666666666666666666665
No 143
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.05 E-value=4.4 Score=38.63 Aligned_cols=57 Identities=25% Similarity=0.514 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 59 LAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 59 LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+..+|..|.++++....++.+|. ..+.....++..+.+|++.+-.-+|+|+.+++.|
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~ 92 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL 92 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444333333333333333 2223333333444444444444444444444433
No 144
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=87.96 E-value=5.4 Score=41.45 Aligned_cols=36 Identities=11% Similarity=0.305 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
...||.++..|+....++.-.+.+|+.++..|+.++
T Consensus 297 l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i 332 (754)
T TIGR01005 297 QAELRATIADLSTTMLANHPRVVAAKSSLADLDAQI 332 (754)
T ss_pred HHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Confidence 333444444444443333334444444444444433
No 145
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.95 E-value=9 Score=40.59 Aligned_cols=86 Identities=22% Similarity=0.375 Sum_probs=50.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----HH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS----KL 115 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva----KL 115 (278)
.+-.++..||.-+.+|.....+=++.|.+|++.+..|+..|. +++.-........+|-..+...+.+|++.|. +.
T Consensus 419 ~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~-~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~v 497 (652)
T COG2433 419 VYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE-RFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRV 497 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666666666666666666666666666663 4444444444455555555556655555543 45
Q ss_pred HHHHHHHHhhc
Q 023690 116 EVFRKTLVQSL 126 (278)
Q Consensus 116 E~FKk~LmqSL 126 (278)
|-||+.|-+-.
T Consensus 498 e~L~~~l~~l~ 508 (652)
T COG2433 498 EELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 146
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=87.91 E-value=9.2 Score=38.92 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=24.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
-.|++|.+.++.++.+|+.++.+||+....|-.++.
T Consensus 37 ~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 37 VILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777776666655544
No 147
>PRK02793 phi X174 lysis protein; Provisional
Probab=87.75 E-value=3.6 Score=31.63 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL 108 (278)
...+...+.+++.+.|...++.|
T Consensus 26 ~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 26 ELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444433
No 148
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=87.61 E-value=2.3 Score=37.15 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=35.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAE-LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~-Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
.+..++..+|.+++.++.+..+....... +.+....++.++. ...++..+..+|.+.|..+++.|+++
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~----~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIE----KLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55556666666666666655433322222 2222233333332 44455555666666777777776654
No 149
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=87.59 E-value=2.4 Score=43.37 Aligned_cols=22 Identities=32% Similarity=0.336 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023690 59 LAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 59 LaEKd~~i~~Lq~r~s~le~~l 80 (278)
|+|-.....+||+++..|..++
T Consensus 71 LteqQ~kasELEKqLaaLrqEl 92 (475)
T PRK13729 71 TTEMQVTAAQMQKQYEEIRREL 92 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444333
No 150
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=87.59 E-value=9 Score=29.04 Aligned_cols=56 Identities=30% Similarity=0.395 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
+.||+||+. |...-.+|. ++-.-...+..||..+...|..|..|.+.|...+..|.
T Consensus 4 saL~~Eira-------kQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 4 SALEAEIRA-------KQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457777653 444444553 34444444448888999888888888777777666654
No 151
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=87.55 E-value=17 Score=37.36 Aligned_cols=85 Identities=29% Similarity=0.406 Sum_probs=57.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHHHH-------HHHH
Q 023690 37 TSIAISTRVSDLESEHSALRSQLAE------------------------KDSRIAELQSQIESIYSSLS-------DKLG 85 (278)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaE------------------------Kd~~i~~Lq~r~s~le~~l~-------~rL~ 85 (278)
..+-+-.||.+||.|-+-|-.||.+ --.||.-|+..|..|-..|. .+|.
T Consensus 202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888999999999988888742 12345555555555554444 5555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (278)
+-.+|.....+||..| -+||.+.|.|=|++-|+|-.
T Consensus 282 qy~~Ee~~~reen~rl---QrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 282 QYRAEEVDHREENERL---QRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Confidence 5555555555555444 47899999999999888754
No 152
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=87.49 E-value=4.5 Score=33.93 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 30 LDVARKITSIAISTRV--------SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 30 LdlarkIts~A~atRV--------s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
||+||+.=++-+-.|. .-|+.|+..||..|+-|++.+..+.+++...+.-|.
T Consensus 14 lD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~ 73 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLS 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999988887775 368899999999999999999999999988886654
No 153
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=87.47 E-value=5.6 Score=32.41 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
.++..+|..+-..+...++.|+..|.-++
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~ 92 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVS 92 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 44555555555555555555555444443
No 154
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=87.42 E-value=5.3 Score=43.08 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=27.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
.|..|++|..+|++.|+.|.+.-..+++-|..+.+++
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~ 532 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAEL 532 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999988876655555555554444
No 155
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=87.41 E-value=21 Score=34.91 Aligned_cols=87 Identities=26% Similarity=0.428 Sum_probs=56.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHH-------HHHH
Q 023690 36 ITSIAISTRVSDLESEHSALRSQLAE-----------------------KDSRIAELQSQIESIYSSLS-------DKLG 85 (278)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~LaE-----------------------Kd~~i~~Lq~r~s~le~~l~-------~rL~ 85 (278)
-.-|=+-.||.+|+.|-+.|..+|.. ...||..|..-|..|-..|. .++.
T Consensus 178 ~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~ 257 (310)
T PF09755_consen 178 ALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMA 257 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566677777776666666652 22344445444444444443 5666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
+..++-..+..||..|. ++|.+++++-|++=|+|--|
T Consensus 258 ~~~~eek~ireEN~rLq---r~L~~E~erreal~R~lses 294 (310)
T PF09755_consen 258 QYLQEEKEIREENRRLQ---RKLQREVERREALCRHLSES 294 (310)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 66667777777887776 57899999999999988543
No 156
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.27 E-value=5.3 Score=42.50 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=28.1
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 53 SALRSQL-AEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNT 104 (278)
Q Consensus 53 ~~LR~~L-aEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~T 104 (278)
..||.+- ..-+..-.+|++|+..|..+.. .+|.++.++..+|+..-..|+..
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR 601 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAER 601 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566663 3344446778888877777666 34444444444444433344433
No 157
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=87.26 E-value=11 Score=32.73 Aligned_cols=69 Identities=25% Similarity=0.349 Sum_probs=35.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
.+....|+.|+..||..-.+=+......+.||+.||.... ..|..+.++..++. ..+...|-.|..++.
T Consensus 65 t~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~---e~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 65 TSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLK---EESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHh
Confidence 3444556666666664333333334444555777776655 44445566544443 334445555555543
No 158
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=87.19 E-value=4.2 Score=41.23 Aligned_cols=47 Identities=26% Similarity=0.293 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHhhcccc
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKL-----EVFRKTLVQSLKDD 129 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL-----E~FKk~LmqSLq~d 129 (278)
.|....++.++|.++.+.+...+.++...+.+. +.|.+.+..-|++=
T Consensus 340 ~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~L 391 (563)
T TIGR00634 340 QLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKAL 391 (563)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444566777888888888888888888877 77777777777653
No 159
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.17 E-value=16 Score=42.17 Aligned_cols=29 Identities=14% Similarity=0.098 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 90 DKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
+..++..+.+.+...+..++..++.|+.-
T Consensus 398 qLaelqqel~elQ~el~q~qq~i~~Le~~ 426 (1486)
T PRK04863 398 QLADYQQALDVQQTRAIQYQQAVQALERA 426 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444
No 160
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=87.16 E-value=5.1 Score=33.13 Aligned_cols=41 Identities=24% Similarity=0.440 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
|..|-+.+..|-..+ ....+||+.|.-||..|-..+.++..
T Consensus 17 l~~l~~~~~~LK~~~----~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 17 LGQLLEELEELKKQL----QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333334444444333 37888999999999988887777665
No 161
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=87.16 E-value=18 Score=33.67 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 023690 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS 81 (278)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd-----~~i~~Lq~r~s~le~~l~ 81 (278)
++|+-...-...++..++...+.++..|...+..+. +.+...+.++..+...|.
T Consensus 150 ~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~ 208 (319)
T PF02601_consen 150 QRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLK 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677788888888888888888777654 456777777776666665
No 162
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=87.15 E-value=7.6 Score=41.89 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
+.+....+.++|+ .+++.+|..|+..|..|+.++..++.+.
T Consensus 277 ~~~s~~~~mK~k~-------d~~~~eL~rk~~E~~~~qt~l~~~~~~~ 317 (775)
T PF10174_consen 277 VYKSHSLAMKSKM-------DRLKLELSRKKSELEALQTRLETLEEQD 317 (775)
T ss_pred HHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3455566666553 4444444444444444444444444433
No 163
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=87.02 E-value=5.7 Score=35.41 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 94 LSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
++.++....+.|..|.+.-..|+.
T Consensus 161 ~~~~~k~~~~ei~~lk~~~~ql~~ 184 (189)
T PF10211_consen 161 RQEEEKKHQEEIDFLKKQNQQLKA 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555544443
No 164
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.92 E-value=12 Score=29.10 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 023690 91 KERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~ 109 (278)
|..|.+||..|..-..+|.
T Consensus 34 n~~L~~e~~~L~~en~~L~ 52 (72)
T PF06005_consen 34 NNELKEENEELKEENEQLK 52 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 165
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=86.89 E-value=11 Score=39.76 Aligned_cols=77 Identities=22% Similarity=0.348 Sum_probs=56.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-------LSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~k-------L~~E~~~La~TvKkL~rDva 113 (278)
|-..|+.||++||..+.+.|..|..++..++.-|.++. +++.....++.= -..+...|..-.++|+..|.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999998887 455555544433 33455556666666666666
Q ss_pred HHHHHHH
Q 023690 114 KLEVFRK 120 (278)
Q Consensus 114 KLE~FKk 120 (278)
.|+...|
T Consensus 160 ~~q~~~R 166 (632)
T PF14817_consen 160 QLQDIQR 166 (632)
T ss_pred HHHHHHh
Confidence 6655543
No 166
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.65 E-value=9.1 Score=37.63 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=16.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAEL 69 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~L 69 (278)
.+..|+.++..|+.++++....+.++
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~ 262 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGL 262 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 55666666666666666666666655
No 167
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=86.64 E-value=4 Score=39.45 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 36 ITSIAISTRVSDLESEH-------SALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (278)
Q Consensus 36 Its~A~atRVs~LE~E~-------~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~Tv 105 (278)
|.-+|--.|+.+||.|+ +.||.+-.|=+.+|.+|-+-|+.....+. .+|++.++++..|.+++..+...|
T Consensus 229 lG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 229 LGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44567778999999885 46777777778888888887777776655 788888888888888877766655
Q ss_pred H
Q 023690 106 R 106 (278)
Q Consensus 106 K 106 (278)
+
T Consensus 309 ~ 309 (330)
T KOG2991|consen 309 G 309 (330)
T ss_pred c
Confidence 4
No 168
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.64 E-value=7.7 Score=36.99 Aligned_cols=58 Identities=26% Similarity=0.475 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
++.+...+-.+|...+..|.+++.++..++. +.....++..+|++|.+.|.++++..+
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~----~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQK----EIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333334444444444333332 223445555555555555555554433
No 169
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=86.63 E-value=8.1 Score=30.83 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRK 107 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKk 107 (278)
.+|-.+..++++|..-+..+...++.
T Consensus 53 ~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 53 QELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33335555555555555555544443
No 170
>PRK00106 hypothetical protein; Provisional
Probab=86.35 E-value=22 Score=36.92 Aligned_cols=14 Identities=7% Similarity=0.133 Sum_probs=8.4
Q ss_pred HHHHHHHhhccccc
Q 023690 117 VFRKTLVQSLKDDE 130 (278)
Q Consensus 117 ~FKk~LmqSLq~d~ 130 (278)
-.|..||..+.++-
T Consensus 169 eak~~l~~~~~~~~ 182 (535)
T PRK00106 169 EAREIILAETENKL 182 (535)
T ss_pred HHHHHHHHHHHHHH
Confidence 35666666666553
No 171
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=86.34 E-value=18 Score=31.94 Aligned_cols=79 Identities=19% Similarity=0.339 Sum_probs=57.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRI-----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i-----~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
-+...|-+||......|..|+|=.+.. .++++=|..+.. +|-+|....++-.+|...+|.|...++.|..-|.+
T Consensus 45 ~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~-lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 45 EVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE-LQVRLAMLREREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888888888888655443 233333332221 22556688888899999999999999999999998
Q ss_pred HHHHH
Q 023690 115 LEVFR 119 (278)
Q Consensus 115 LE~FK 119 (278)
-|.+=
T Consensus 124 AE~l~ 128 (159)
T PF05384_consen 124 AENLV 128 (159)
T ss_pred HHHHH
Confidence 87763
No 172
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=86.25 E-value=5.5 Score=44.35 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=51.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
..+++.-+.-||.-|+.||++|.||.....+|+..+..|+.++. ..++++..+..|..+...-.++|.
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~----klrqe~~e~l~ea~ra~~yrdeld 239 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEIS----KLRQEIEEFLDEAHRADRYRDELD 239 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhHHH
Confidence 56777888889999999999999999999999999888888775 556666666665554444443333
No 173
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=86.04 E-value=5.5 Score=35.51 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=15.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAEL 69 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~L 69 (278)
+...++.+|+.++..++.++.+-...|.++
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555554444444
No 174
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=85.85 E-value=4.1 Score=44.56 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=76.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRI----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i----~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
..-+--+++.||.|..+||..|..-.... .+-..++..||.++ +.|+..+..+.+|.+-+..-..+++||...+-
T Consensus 511 ~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~-s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~ 589 (913)
T KOG0244|consen 511 SGTLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQI-SLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIH 589 (913)
T ss_pred hhhHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHhhHHHHHHhccchhhHHHHHHHHHHHH
Confidence 45566677788888889998887655433 33345666677666 68888999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccCC
Q 023690 114 KLEVFRKTLVQSLKDDEDA 132 (278)
Q Consensus 114 KLE~FKk~LmqSLq~d~~~ 132 (278)
.+|.-|.+||+-..+|.+.
T Consensus 590 ~~k~~kv~l~~~~~~d~ek 608 (913)
T KOG0244|consen 590 IAKGQKVQLLRVMKEDAEK 608 (913)
T ss_pred HHHHHHHHHHHHHhhhHHH
Confidence 9999999999998888763
No 175
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=85.82 E-value=6.5 Score=36.53 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
|..+.+|=+.+.-....+.+|+.++..|+.++. ..+-.++.++-+.+.|...-|.|..||..+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~----~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDID----SLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555556667777776666665 555555666677777777777777777764
No 176
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=85.82 E-value=21 Score=36.28 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=8.5
Q ss_pred HHHHHHHHHhhcccc
Q 023690 115 LEVFRKTLVQSLKDD 129 (278)
Q Consensus 115 LE~FKk~LmqSLq~d 129 (278)
+|.|+++|-+++...
T Consensus 141 ~e~f~e~l~~~~~~s 155 (448)
T COG1322 141 LEKFREQLEQRIHES 155 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666666554443
No 177
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=85.72 E-value=6.2 Score=33.39 Aligned_cols=33 Identities=30% Similarity=0.383 Sum_probs=12.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq 70 (278)
=..|..|+...+.++..++..|.+=...+.+|+
T Consensus 32 F~dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~ 64 (141)
T PF13874_consen 32 FEDLKKRVEAQEEEIAQHRERLKEINDKLEELQ 64 (141)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777766666666663
No 178
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=85.71 E-value=3.6 Score=45.42 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=17.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
-++.|+...+.|..++.+-+..|.+|+++|
T Consensus 411 E~~eL~r~kE~Lsr~~d~aEs~iadlkEQV 440 (1243)
T KOG0971|consen 411 ELEELRRQKERLSRELDQAESTIADLKEQV 440 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666666555
No 179
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.68 E-value=5.7 Score=30.66 Aligned_cols=35 Identities=34% Similarity=0.505 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
+.+..++..+|.+..-.+.++||||...+..+|.-
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~ 48 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQ 48 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34778888888888888888888888888777643
No 180
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=85.66 E-value=8.6 Score=43.66 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=55.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH----
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS---- 113 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva---- 113 (278)
=+.+..++..||.|+..|+-|+.+-+ ++..++++..|+..+. ...-+.+.|..+...+.+.++++.++|.
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~----~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~ 1083 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEERE----KLSSEKNLLLGEMKQYESQIKKLKQELREKDF 1083 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH----HhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 35566677777777777777776655 5666666666665554 5555667777777788888888888887
Q ss_pred --HHHHHHHHHHh
Q 023690 114 --KLEVFRKTLVQ 124 (278)
Q Consensus 114 --KLE~FKk~Lmq 124 (278)
..++|.++++.
T Consensus 1084 kd~~~nyr~~~ie 1096 (1294)
T KOG0962|consen 1084 KDAEKNYRKALIE 1096 (1294)
T ss_pred ccHHHHHHHHHHH
Confidence 46666666654
No 181
>PRK00295 hypothetical protein; Provisional
Probab=85.55 E-value=7 Score=29.75 Aligned_cols=40 Identities=15% Similarity=0.070 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|.+||.|++-.|..+. ...+...+.+++.+.|...++.|.
T Consensus 7 i~~LE~kla~qE~tie----~Ln~~v~~Qq~~I~~L~~ql~~L~ 46 (68)
T PRK00295 7 VTELESRQAFQDDTIQ----ALNDVLVEQQRVIERLQLQMAALI 46 (68)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444333 444444444555555555544443
No 182
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.51 E-value=2.8 Score=42.50 Aligned_cols=57 Identities=18% Similarity=0.202 Sum_probs=42.8
Q ss_pred CchhhHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 25 DPFEQLDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 25 DP~EQLdlarkIts-~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+|.+|+++--.+.. ..+..++..+..+...++++|.+......++++++..|+.++.
T Consensus 142 ~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 142 RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 88899888777764 3577788888888888888887777777777777777666655
No 183
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=85.49 E-value=7.5 Score=35.77 Aligned_cols=67 Identities=28% Similarity=0.395 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
+||-.||.+|.+-...+...+.++..|..++. .-|.....+......|...|-..|-+|..+++.|.
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr 100 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELR 100 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHH
Confidence 45555555555555555555555555555554 33446666777777777777777877777777764
No 184
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=85.46 E-value=9.4 Score=37.45 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=22.2
Q ss_pred CCCCChHHHHhcCCCCc-hhhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 023690 10 STFDLPEEVLQVLPSDP-FEQLDVARKITSIAISTRVSDLESEHSALR 56 (278)
Q Consensus 10 ~~F~lp~eil~vLP~DP-~EQLdlarkIts~A~atRVs~LE~E~~~LR 56 (278)
+||+.=+-|=..+|+-- ..+||--+ ..+..++..|+.||..+-
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i----~~l~~~i~~ld~eI~~~v 45 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELI----AKLRKEIRELDEEIKELV 45 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 36777777777777632 13333322 344445555555555433
No 185
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=85.28 E-value=11 Score=36.05 Aligned_cols=80 Identities=21% Similarity=0.298 Sum_probs=51.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ----RDVSK 114 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i---~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~----rDvaK 114 (278)
..|+.-|--|-.-+|.||-.+-+.- .--.+|.+.+|.++. ...|+|.+|+.||+.|-..-+.|. .-+..
T Consensus 58 r~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~----dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~ 133 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIK----DLTEENEILQNENDSLRAINESLLAKNHELDSE 133 (292)
T ss_pred HHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566666666666666664321111 112345566665554 888899999999999887766653 44667
Q ss_pred HHHHHHHHHhh
Q 023690 115 LEVFRKTLVQS 125 (278)
Q Consensus 115 LE~FKk~LmqS 125 (278)
||-++..||.+
T Consensus 134 le~~~~~l~~~ 144 (292)
T KOG4005|consen 134 LELLRQELAEL 144 (292)
T ss_pred HHHHHHHHHhh
Confidence 88888888766
No 186
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=85.23 E-value=19 Score=35.07 Aligned_cols=86 Identities=19% Similarity=0.333 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH---HHHHHHHHHHHHHH
Q 023690 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI-----------YSSLS---DKLGQAQADKERLS 95 (278)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l-----------e~~l~---~rL~~a~ee~~kL~ 95 (278)
+.+-..|...++-.|+..||.|-..||.....=......++++-..| -.++. .=|....+++...+
T Consensus 154 ~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQ 233 (306)
T PF04849_consen 154 LSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQ 233 (306)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 33445577789999999999999999987664333332333332222 11111 23335556666666
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 023690 96 KENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 96 ~E~~~La~TvKkL~rDvaKL 115 (278)
+|...|..+|-.|++.+..+
T Consensus 234 EEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666555544
No 187
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.20 E-value=14 Score=30.75 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+..||.++.+-...|.+|+..+..+...|.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444443
No 188
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=85.18 E-value=14 Score=27.81 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=39.3
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 51 EHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 51 E~~~LR~~La-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
++..+..+|. ++...-.+|+.-|-.=-..|. .+-+++.+|.++-..|.+.+..|+..+.+|
T Consensus 23 ~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI----~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 23 EIRQLENKLRQEIEEKDEELRKLVYENYRDFI----EASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333 334444455544444444444 888888999999889999999888888776
No 189
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=85.10 E-value=22 Score=34.51 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL-------S-------DKLG----QAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l-------~-------~rL~----~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|-+.+++++..|.+-.+.|.+|+++|..|+.++ . ..+. ...+-..+|.+=.+.|+..-.+|+
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~~~~~~~t~~la~~t~~L~~~~~~l~ 151 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHLMSQADATRKLAEATRELAVAQERLE 151 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666555 2 1221 112223344444444666666677
Q ss_pred hhHHHHHHHHHHH
Q 023690 110 RDVSKLEVFRKTL 122 (278)
Q Consensus 110 rDvaKLE~FKk~L 122 (278)
+.+.|+...-++|
T Consensus 152 q~~~k~~~~q~~l 164 (301)
T PF06120_consen 152 QMQSKASETQATL 164 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 7777666654433
No 190
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=85.10 E-value=13 Score=32.93 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
++----+.-|+..+|.+...|++.|..|...|...+..|..++..+.
T Consensus 78 ~~~r~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id 124 (158)
T PF09486_consen 78 RRYRDVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARID 124 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 33444567899999999999999999999999999999999998887
No 191
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=85.08 E-value=15 Score=32.80 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=52.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEA 100 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~ 100 (278)
--.+.-++..+|.++..|++-|..|...|+..+..|..++..+. ++|..+.|.......|-+.
T Consensus 81 r~vl~~~~~~aE~~~aaa~~al~~~~~~laa~~r~iaRn~a~id~c~eR~~~l~ra~ea~~edA~dEEa 149 (158)
T TIGR02559 81 RDVLEAHLGAAEQAEAAARAALQALAAALAAKKREIARLDAQIDVCRERAERLRRAGEAAREEALEEEA 149 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 34457789999999999999999999999999999999999988 7777777776666555443
No 192
>PRK12705 hypothetical protein; Provisional
Probab=85.06 E-value=13 Score=38.21 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=10.2
Q ss_pred HHHHHHhhcccccC
Q 023690 118 FRKTLVQSLKDDED 131 (278)
Q Consensus 118 FKk~LmqSLq~d~~ 131 (278)
.|+.||..+.++-.
T Consensus 143 ak~~l~~~~~~~~~ 156 (508)
T PRK12705 143 ARKLLLKLLDAELE 156 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 58888888876643
No 193
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=85.04 E-value=4.1 Score=39.84 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQA--------DKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~e--------e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
.-++.|+|.|..=..+-..|..++++||..|. +|..-.+ ...+.--|+..|+.-+.+-.++--||-+=+..
T Consensus 30 dairiL~QdLEkfe~Ekd~~a~~aETLeln~e-alere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~ea 108 (389)
T KOG4687|consen 30 DAIRILGQDLEKFENEKDGLAARAETLELNLE-ALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREA 108 (389)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHH
Confidence 33455555554444444445555555555543 1111000 11222235555666565555555566555555
Q ss_pred HHhhccc
Q 023690 122 LVQSLKD 128 (278)
Q Consensus 122 LmqSLq~ 128 (278)
|++.+.|
T Consensus 109 L~dq~ad 115 (389)
T KOG4687|consen 109 LLDQKAD 115 (389)
T ss_pred HHHHHHH
Confidence 5555443
No 194
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=85.04 E-value=17 Score=31.06 Aligned_cols=59 Identities=31% Similarity=0.482 Sum_probs=40.5
Q ss_pred HHHhcCCCCchhhHHH---------HHHHH--HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 17 EVLQVLPSDPFEQLDV---------ARKIT--SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (278)
Q Consensus 17 eil~vLP~DP~EQLdl---------arkIt--s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~ 75 (278)
|++.-|-..|+-.|-. |--|+ +++|..|+.+.|.++..+-.++.|+...+....+.++.
T Consensus 19 ~~leklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~k 88 (131)
T PF10158_consen 19 EVLEKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEK 88 (131)
T ss_pred HHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777777665432 11222 78888889999999999988888887766655544443
No 195
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=84.99 E-value=8 Score=35.91 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~Tv 105 (278)
..+.++...|+.++.+|+.....+++++..|.-+.. ...+|...|.+|++.|.++|
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e----~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE----GLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555555555444 55555555666655555544
No 196
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.87 E-value=9.7 Score=43.01 Aligned_cols=81 Identities=22% Similarity=0.257 Sum_probs=47.1
Q ss_pred cCCCCchhhHHHHHHH-----HHHHHHHhhhhhHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 21 VLPSDPFEQLDVARKI-----TSIAISTRVSDLESEHSALRSQ--------------LAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 21 vLP~DP~EQLdlarkI-----ts~A~atRVs~LE~E~~~LR~~--------------LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|.+-+|.+==.+.++. ..+++..++..||..+..||.. +..=...|+.|+.++..+|.++.
T Consensus 772 ~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~ 851 (1293)
T KOG0996|consen 772 VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL 851 (1293)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555433333322 2344444444455554444443 33334466777778888888865
Q ss_pred ------HHHHHHHHHHHHHHHHHHHH
Q 023690 82 ------DKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 82 ------~rL~~a~ee~~kL~~E~~~L 101 (278)
.+|+...+.+.+|.+|.+.|
T Consensus 852 k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 852 KKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777777
No 197
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.86 E-value=23 Score=34.93 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=26.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
.+.+|...+++++..+.+++...+..+..++.....++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666777777777777777777777776666664444
No 198
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=84.79 E-value=15 Score=29.37 Aligned_cols=49 Identities=16% Similarity=0.215 Sum_probs=26.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS 95 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~ 95 (278)
..||..+.+|-...+.-|+.+.++......|+.++. +|......+..+.
T Consensus 27 ~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k-~L~~~~~Ks~~~i 75 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMK-KLNTQLSKSSELI 75 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHHHH
Confidence 345555555555555556666666666666666654 3333333333333
No 199
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=84.57 E-value=0.3 Score=50.82 Aligned_cols=67 Identities=21% Similarity=0.387 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
+.||.+||.++.+.|.||.| +.+|+ .+++...++|..|.+.+..|...+++.+.--.+|+.+|++
T Consensus 307 a~r~~klE~~ve~YKkKLed----~~~lk-----------~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~q 371 (713)
T PF05622_consen 307 ADRADKLENEVEKYKKKLED----LEDLK-----------RQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQ 371 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34555555555555554443 22222 2333444444444444455555555544444455555554
Q ss_pred HH
Q 023690 122 LV 123 (278)
Q Consensus 122 Lm 123 (278)
+.
T Consensus 372 i~ 373 (713)
T PF05622_consen 372 IQ 373 (713)
T ss_dssp --
T ss_pred HH
Confidence 43
No 200
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=84.51 E-value=14 Score=41.93 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=38.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+=..|+..|+.+|..|+.++++.++.+..|+.++..|+.++.
T Consensus 739 ~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 739 ARLRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999877
No 201
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=84.45 E-value=8.9 Score=33.16 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
+...|+..+......+...+..+..+..+|
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL 49 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQL 49 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444444444444444444444444
No 202
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=84.40 E-value=15 Score=35.00 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
|-+.+..|.+..-+.-.|.++++.+...-.+++..+....+.+..|..+..+|...++|-..++.+.
T Consensus 143 E~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~ 209 (267)
T PF10234_consen 143 EVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERN 209 (267)
T ss_pred hHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666677777666665555557777888889999999999999998877776653
No 203
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=84.36 E-value=2.3 Score=41.44 Aligned_cols=68 Identities=19% Similarity=0.404 Sum_probs=11.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
+..++..|..|+..++....|.-..|..+..+...++..|..|+..+.+++..|.+....+.++++.+
T Consensus 103 l~~~~~elkkEie~IKk~q~e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~ 170 (370)
T PF02994_consen 103 LKKRIKELKKEIENIKKNQSEMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKEL 170 (370)
T ss_dssp ---------------H-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHH
Confidence 45667778888888887666655555555444443333333344444444444444444443333333
No 204
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=84.25 E-value=24 Score=29.73 Aligned_cols=41 Identities=15% Similarity=0.264 Sum_probs=19.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
.+.+..|+..||.++...+-.-.|=...-.+|+..+..|..
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~ 51 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQA 51 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH
Confidence 45566677777777666654433222222224444444443
No 205
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=84.15 E-value=14 Score=37.71 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHHHHHHHHHHHhhccccc
Q 023690 82 DKLGQAQADKERLSKENEALTNT----------VRKLQRDVSKLEVFRKTLVQSLKDDE 130 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~T----------vKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (278)
..|.++.+.+..|..|-+.|... ++++..++..|+.=-+.+...+.+..
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~ 375 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQE 375 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56678888889999999999888 88999988888877666666655443
No 206
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=84.13 E-value=4.4 Score=40.91 Aligned_cols=71 Identities=30% Similarity=0.412 Sum_probs=58.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKD--SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd--~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
...+..|+..-|.|+..||.+|..|. ..-.||+.|+..|...|+ +.....+.|..||.+|.-+..+|.+.+
T Consensus 357 ~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li----~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 357 KSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLI----QKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHH----HHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 55677888888999999999999877 334689999999887777 778888899999999988877776554
No 207
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=84.06 E-value=7.5 Score=36.83 Aligned_cols=83 Identities=22% Similarity=0.288 Sum_probs=45.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHh
Q 023690 41 ISTRVSDLESEHSALRSQLAE-------KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK----ENEALTNTVRKLQ 109 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaE-------Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~----E~~~La~TvKkL~ 109 (278)
...-++.|+.++..++.+|++ ..-.+..|+.++..|+.++. +++.++.. ....+......|.
T Consensus 212 ~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~-------~e~~~i~~~~~~~l~~~~~~~~~L~ 284 (362)
T TIGR01010 212 QLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQID-------EQRNQLSGGLGDSLNEQTADYQRLV 284 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHH-------HHHHHhhcCCCccHHHHHHHHHHHH
Confidence 333455555555555555443 33445667777777777665 11112111 2344455667788
Q ss_pred hhHHHHHHHHHHHHhhccccc
Q 023690 110 RDVSKLEVFRKTLVQSLKDDE 130 (278)
Q Consensus 110 rDvaKLE~FKk~LmqSLq~d~ 130 (278)
||+.--+..=..+++.+++-.
T Consensus 285 re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 285 LQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888776666666666665443
No 208
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=84.00 E-value=14 Score=26.94 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~ 81 (278)
-|...|.+|+.++..|+.+..
T Consensus 23 RKk~~~~~Le~~~~~L~~en~ 43 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENE 43 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 466677777777766665443
No 209
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=83.97 E-value=5.4 Score=32.61 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
+..+++.+|+.+|+.|...|+.|+.+-+-+|..=|.-+.=..++
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~g 81 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPG 81 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCC
Confidence 66667778888888888888888877666776655544444433
No 210
>PRK04863 mukB cell division protein MukB; Provisional
Probab=83.92 E-value=29 Score=40.08 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=38.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDS------RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~------~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
..|..++..||.++..++..+..+.+ .+..+...+..|+..+. .+|..+.++..++.++...+...++.|.
T Consensus 317 ~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLq 396 (1486)
T PRK04863 317 AELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELK 396 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777666554332 22333334444444443 4444444444444444444444444444
Q ss_pred hhHHH
Q 023690 110 RDVSK 114 (278)
Q Consensus 110 rDvaK 114 (278)
..++.
T Consensus 397 eqLae 401 (1486)
T PRK04863 397 SQLAD 401 (1486)
T ss_pred HHHHH
Confidence 44433
No 211
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=83.82 E-value=12 Score=41.93 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=42.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------------~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
.++|++....|+.|+.+++.+...+-+|+..|+..+. ..|+..-+..+.|.+.++.|...-++|..=
T Consensus 504 lsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~ 583 (1195)
T KOG4643|consen 504 LSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKY 583 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3556666666666666666555554444444444333 344444455555666666655555555555
Q ss_pred HHHHHHHHHH
Q 023690 112 VSKLEVFRKT 121 (278)
Q Consensus 112 vaKLE~FKk~ 121 (278)
+.+|++++++
T Consensus 584 idaL~alrrh 593 (1195)
T KOG4643|consen 584 IDALNALRRH 593 (1195)
T ss_pred HHHHHHHHHH
Confidence 5666665554
No 212
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=83.81 E-value=6.5 Score=28.87 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (278)
....++++|.+|++.|...++.|..|-+.+|.+=|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44555667777777777777777667777777655
No 213
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=83.67 E-value=22 Score=28.82 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
...+-..-|.+..+.|...+++|+.++.+|..--.+++.-|+
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677788888888899999998888877777766554
No 214
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=83.66 E-value=37 Score=36.64 Aligned_cols=79 Identities=18% Similarity=0.235 Sum_probs=55.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI---YSS---LS-DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l---e~~---l~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
+|-++...--.|++.||++++||+..+.-|++++..- +.+ ++ .+|+.+.|..+.-.++++..+.-.+.+....
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 3334444444568999999999999999888776532 222 22 6888888888888888888777777766666
Q ss_pred HHHHHH
Q 023690 113 SKLEVF 118 (278)
Q Consensus 113 aKLE~F 118 (278)
.|....
T Consensus 308 ~k~~~i 313 (861)
T KOG1899|consen 308 DKNAQI 313 (861)
T ss_pred hhhhhh
Confidence 555444
No 215
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=83.65 E-value=12 Score=32.74 Aligned_cols=69 Identities=20% Similarity=0.330 Sum_probs=37.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (278)
+--|+-.|-.++..+++++.+.........+....+ ..++..++.+|...|...+++...|+. ++|+
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~----------~~~~~~~~~~ei~~lk~el~~~~~~~~---~Lkk 182 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL----------LKEENKKLSEEIEKLKKELEKKEKEIE---ALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh----------hhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 456777777777766666654444443332222211 335556666666666666666555544 4455
Q ss_pred HH
Q 023690 121 TL 122 (278)
Q Consensus 121 ~L 122 (278)
+.
T Consensus 183 Q~ 184 (192)
T PF05529_consen 183 QS 184 (192)
T ss_pred HH
Confidence 43
No 216
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=83.56 E-value=5.4 Score=37.42 Aligned_cols=77 Identities=23% Similarity=0.255 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
...++.-...|+....+.++|-+..=.--. .+..+...+...|.+||+.|...|..|.+++++|..++.+.++-..
T Consensus 181 ~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 181 KSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred hccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 334444444566666666655442211111 3334556677889999999999999999999999998888776644
Q ss_pred c
Q 023690 128 D 128 (278)
Q Consensus 128 ~ 128 (278)
+
T Consensus 261 ~ 261 (269)
T KOG3119|consen 261 A 261 (269)
T ss_pred C
Confidence 3
No 217
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.56 E-value=8.6 Score=29.08 Aligned_cols=47 Identities=17% Similarity=0.272 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.|.+||.|++-+|..+. ...+...+.+++.+.|...++.|...|..+
T Consensus 5 Ri~~LE~~la~qe~~ie----~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~ 51 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIE----ELNDVVTEQQRQIDRLQRQLRLLRERLREL 51 (69)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444433332 444555555555555555555555444433
No 218
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=83.43 E-value=28 Score=34.06 Aligned_cols=54 Identities=15% Similarity=0.257 Sum_probs=30.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 023690 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~La--EKd~~i~~Lq~r~s~le~~l~ 81 (278)
++||-...-...++..++..-+..+..|+..|. .-...+..++.++..+...|.
T Consensus 267 q~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 267 QRLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQ 322 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 355555555677777777777777777776663 223334444444444444443
No 219
>PRK01156 chromosome segregation protein; Provisional
Probab=83.36 E-value=17 Score=38.59 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 023690 89 ADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~r 110 (278)
.+...|..+...|..++..|..
T Consensus 695 ~~~~~l~~~i~~l~~~~~~l~e 716 (895)
T PRK01156 695 ANRARLESTIEILRTRINELSD 716 (895)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH
Confidence 3333344444444443333333
No 220
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=83.33 E-value=22 Score=32.91 Aligned_cols=38 Identities=24% Similarity=0.167 Sum_probs=25.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
..|..||.|+..|+.....+...+..|+.....+...+
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~ 105 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQEL 105 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888888887777777777777765555544444
No 221
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.25 E-value=5.7 Score=36.91 Aligned_cols=39 Identities=26% Similarity=0.392 Sum_probs=17.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
+.-.||..||..+..-.+.+.|-...|.+||..|..|-.
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG 75 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRG 75 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666655544333333444444444444443333
No 222
>PRK00736 hypothetical protein; Provisional
Probab=83.22 E-value=9 Score=29.15 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
.|.+||.|++-.|..+. ...+...+.+++.+.|...++.|.
T Consensus 6 Ri~~LE~klafqe~tie----~Ln~~v~~Qq~~i~~L~~ql~~L~ 46 (68)
T PRK00736 6 RLTELEIRVAEQEKTIE----ELSDQLAEQWKTVEQMRKKLDALT 46 (68)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555555554443 444444444444444444444443
No 223
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=83.19 E-value=14 Score=33.07 Aligned_cols=34 Identities=32% Similarity=0.407 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHH
Q 023690 82 DKLGQAQADKERLSKENEAL-------TNTVRKLQRDVSKL 115 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~L-------a~TvKkL~rDvaKL 115 (278)
.||.+-.+.+..|..-|.-| -.+-..|..|+.||
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~kl 107 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKL 107 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666655555555 34445566666665
No 224
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=83.17 E-value=29 Score=36.32 Aligned_cols=98 Identities=22% Similarity=0.339 Sum_probs=54.2
Q ss_pred chhhHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 023690 26 PFEQLDVARKITSIAISTRVSD-----------LESEHSALRSQLAEK----------DSRIAELQSQIESIYSSLSDKL 84 (278)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~-----------LE~E~~~LR~~LaEK----------d~~i~~Lq~r~s~le~~l~~rL 84 (278)
-|-||-||+|.=..-|..||.. |+.||..++..|..= .+.|..|++.+.-|.... .|+
T Consensus 196 ~F~~lsL~f~~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~-~rv 274 (538)
T PF05781_consen 196 EFLRLSLGFKCDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWEDNESREIIQKLQKSLDVLHQCA-TRV 274 (538)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3779999999999999999864 444555555544311 122233333333332222 222
Q ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHhh
Q 023690 85 G-------QAQADKERLSKENEALTNTVRKLQR----DVSKLEVFRKTLVQS 125 (278)
Q Consensus 85 ~-------~a~ee~~kL~~E~~~La~TvKkL~r----DvaKLE~FKk~LmqS 125 (278)
. .+.|| .++.+--....+-|..|.| +-+.|+-|||.|+|.
T Consensus 275 ss~AE~lGAv~QE-~R~SkAvevM~qhvenLkr~~~kehaeL~E~k~~l~qn 325 (538)
T PF05781_consen 275 SSRAEMLGAVHQE-SRVSKAVEVMIQHVENLKRMYEKEHAELEELKKLLLQN 325 (538)
T ss_pred HHHHHHhcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2 22222 2244444455555666655 456689999988764
No 225
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=83.10 E-value=26 Score=29.24 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=34.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
...+|.+.-.+|.++..+|.++.++-..+..|+.++..++..+.
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888999999999999999999999988888887665
No 226
>PRK01156 chromosome segregation protein; Provisional
Probab=83.09 E-value=22 Score=37.77 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=7.4
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 023690 106 RKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 106 KkL~rDvaKLE~FKk~Lm 123 (278)
+++..-+..|+.|++.|.
T Consensus 729 ~~~~~~~~~l~~~r~~l~ 746 (895)
T PRK01156 729 KKIKKAIGDLKRLREAFD 746 (895)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333334444444444333
No 227
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=83.06 E-value=9.7 Score=31.84 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
..|-+.+..|...+. ...+||+.|.-||+.|-..+.++
T Consensus 18 ~~l~~el~~LK~~~~----el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 18 GVLLKELGALKKQLA----ELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444343 77888999999998887777655
No 228
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=83.02 E-value=45 Score=31.98 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=57.3
Q ss_pred hhhhhHHHHHHHHHHHH---HHHHH------------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLA---EKDSR------------------IAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (278)
Q Consensus 44 RVs~LE~E~~~LR~~La---EKd~~------------------i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~ 99 (278)
+|..|-.+-..||.+|. +|-.. |..+-+++-.||.+-. .|-..+..-...+..|+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66666666777777776 44332 3344455555555554 666666777788999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 023690 100 ALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~L 122 (278)
.+...+.++.+.+.+||++-|+|
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876
No 229
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.00 E-value=38 Score=31.14 Aligned_cols=84 Identities=19% Similarity=0.322 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHH-HHHHHHHHHHHHHHHH
Q 023690 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQ-ADKERLSKENEALTNT 104 (278)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------~rL~~a~-ee~~kL~~E~~~La~T 104 (278)
-.+.-+-..|..++..|...+..-...+..-...+.+++.++..|+..|. +.|.... +-...+..++..+...
T Consensus 184 ~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~ 263 (312)
T PF00038_consen 184 KNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAE 263 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHh
Confidence 33334456677777777776666666666555566666666666665554 1121111 1123445555555555
Q ss_pred HHHHhhhHHHH
Q 023690 105 VRKLQRDVSKL 115 (278)
Q Consensus 105 vKkL~rDvaKL 115 (278)
|..|...+++|
T Consensus 264 i~~le~el~~l 274 (312)
T PF00038_consen 264 IAELEEELAEL 274 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred hhccchhHHHH
Confidence 55555555554
No 230
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=82.98 E-value=20 Score=34.34 Aligned_cols=67 Identities=18% Similarity=0.351 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
|.|....+.+|..+..++..+++.+...|.++. .|+.+..++..+|..|...|..+|..+.--|.|+
T Consensus 192 e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 192 EEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444555555555554 5555555666666666666666666665444443
No 231
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=82.92 E-value=16 Score=40.87 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=28.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
++..+|..++.+++.--..+.++...+..|+++|+.++.++. ..+.+..++.+.|.+|...|...+..|
T Consensus 348 ~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 348 DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544443333333333333334444444444331 333344444444444444444433333
No 232
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.83 E-value=8.1 Score=33.12 Aligned_cols=65 Identities=28% Similarity=0.373 Sum_probs=35.4
Q ss_pred HHHhcCCCCchhhHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 023690 17 EVLQVLPSDPFEQLDVARKIT---SIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 17 eil~vLP~DP~EQLdlarkIt---s~A~atRVs~LE~E~~~LR~~La--EKd~~i~~Lq~r~s~le~~l~ 81 (278)
+.+.+++.+-...||--+.-. -..+...+..|++|+..|+..+. |-...|.+|++.+..|+..|.
T Consensus 64 ~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 64 DELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred cccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555442221 24566666667777666666664 555666666666666665543
No 233
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.80 E-value=5.6 Score=44.77 Aligned_cols=51 Identities=27% Similarity=0.447 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 64 SRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
+.|.+||.++..+-..+- +++..+.++..+|..+.+.+...+++-.|+++|
T Consensus 885 ~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k 939 (1293)
T KOG0996|consen 885 ARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIAK 939 (1293)
T ss_pred HHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHH
Confidence 344444444444432222 666777777777777776666666554444444
No 234
>PRK12704 phosphodiesterase; Provisional
Probab=82.78 E-value=41 Score=34.56 Aligned_cols=36 Identities=25% Similarity=0.406 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
.+|.+....|...-+.|..--..++.++....+-|.
T Consensus 110 ~eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~ 145 (520)
T PRK12704 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444333444444444444443
No 235
>PRK00846 hypothetical protein; Provisional
Probab=82.77 E-value=8.4 Score=30.47 Aligned_cols=10 Identities=10% Similarity=0.368 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 023690 69 LQSQIESIYS 78 (278)
Q Consensus 69 Lq~r~s~le~ 78 (278)
|++|+..||.
T Consensus 11 le~Ri~~LE~ 20 (77)
T PRK00846 11 LEARLVELET 20 (77)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 236
>PRK04325 hypothetical protein; Provisional
Probab=82.74 E-value=6.8 Score=30.27 Aligned_cols=12 Identities=33% Similarity=0.285 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 023690 66 IAELQSQIESIY 77 (278)
Q Consensus 66 i~~Lq~r~s~le 77 (278)
|.+||.|++-.|
T Consensus 11 i~~LE~klAfQE 22 (74)
T PRK04325 11 ITELEIQLAFQE 22 (74)
T ss_pred HHHHHHHHHHHH
Confidence 344444443333
No 237
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=82.69 E-value=10 Score=42.39 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
+.....++.++..|+....-.+++|..+|.+|+.=++..
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~ 925 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANA 925 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHH
Confidence 334455667888888999999999999999998766554
No 238
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=82.40 E-value=22 Score=32.01 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
+...++.+|..+...|...|-.|.+..++|..-
T Consensus 121 ~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ 153 (190)
T PF05266_consen 121 EKEAELKELESEIKELEMKILELQRQAAKLKEK 153 (190)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666677777777776665555433
No 239
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=82.32 E-value=42 Score=31.07 Aligned_cols=26 Identities=15% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 101 LTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
|...+..|...++.|+.-|..|+.-.
T Consensus 118 l~~~~~~Le~Ki~e~~~~~~~l~ar~ 143 (225)
T COG1842 118 LKKQLAALEQKIAELRAKKEALKARK 143 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555556666665543
No 240
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=82.29 E-value=10 Score=31.93 Aligned_cols=14 Identities=43% Similarity=0.572 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 023690 68 ELQSQIESIYSSLS 81 (278)
Q Consensus 68 ~Lq~r~s~le~~l~ 81 (278)
+|+.++..|+..|.
T Consensus 13 el~n~La~Le~slE 26 (107)
T PF09304_consen 13 ELQNRLASLERSLE 26 (107)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555543
No 241
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=82.28 E-value=33 Score=34.15 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 023690 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 29 QLdlarkIts~A~atRVs~LE~E~~~LR~~La--EKd~~i~~Lq~r~s~le~~l 80 (278)
+|+-...-...|+..++...+..+..|+..|. .-...+...+.++..+...|
T Consensus 263 rLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL 316 (432)
T TIGR00237 263 RLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRK 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 45555555677888888888888877777654 22233444444444444333
No 242
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=82.20 E-value=8.3 Score=37.61 Aligned_cols=72 Identities=21% Similarity=0.270 Sum_probs=46.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
..-+...|..|+..||++|.|=.--|.-|+++++....... .-.+...++.++|..+-..+-.+..-|.+||
T Consensus 77 sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~ 149 (319)
T PF09789_consen 77 SREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDL 149 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999888766554 1111111344444444444444444444444
No 243
>smart00338 BRLZ basic region leucin zipper.
Probab=82.03 E-value=12 Score=27.31 Aligned_cols=27 Identities=37% Similarity=0.647 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 90 DKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
+...|..||..|...|..|..++..|+
T Consensus 34 ~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 34 KVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555553
No 244
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=81.96 E-value=24 Score=28.13 Aligned_cols=37 Identities=14% Similarity=0.321 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (278)
.++..+|..+++.|++.+.+......+||.--+-+-+
T Consensus 38 e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~ 74 (89)
T PF13747_consen 38 EEEIQRLDADRSRLAQELDQAEARANRLEEANREVSR 74 (89)
T ss_pred HHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3344445555555555554444445555544444433
No 245
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=81.90 E-value=0.44 Score=51.06 Aligned_cols=91 Identities=26% Similarity=0.411 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-----------~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
-.++..++..||.|+..||.++.|-.....+|+.+++.+..+|. .++....+-..+|..+-..|...+.
T Consensus 259 k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le 338 (859)
T PF01576_consen 259 KQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLE 338 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999999998887 2333445566788888888899999
Q ss_pred HHhhhHHHHHHHHHHHHhhccc
Q 023690 107 KLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 107 kL~rDvaKLE~FKk~LmqSLq~ 128 (278)
.++..+++||.-|+.|..=+.|
T Consensus 339 ~~~~~~~~LeK~k~rL~~EleD 360 (859)
T PF01576_consen 339 EANAKVSSLEKTKKRLQGELED 360 (859)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887655443
No 246
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=81.86 E-value=19 Score=33.69 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
.++.-+-.+-++|.+++..|.+.+.+...++.++..--....+....|..+..++...++.|. .||+.-++.
T Consensus 187 ~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~---ekme~e~~~ 258 (297)
T PF02841_consen 187 SMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLK---EKMEEEREQ 258 (297)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 445555666667777777777777777777666651112223334445555555555555554 334444443
No 247
>PF14282 FlxA: FlxA-like protein
Probab=81.78 E-value=8.7 Score=31.29 Aligned_cols=59 Identities=27% Similarity=0.424 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 63 DSRIAELQSQIESIYSSLSDKLGQA-QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~~rL~~a-~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
+..|+.|++++..|+..|. .|... .-....-.+....|-..+.-|...|+.|..=+..-
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~ 77 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQ 77 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666664 22221 10122234445556666666666666665554433
No 248
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=81.60 E-value=9.7 Score=37.26 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 023690 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (278)
-+..|++++..++..+ ++|...++++.|..+.+..|.+++.++.+.++.++.|.
T Consensus 243 ~~~~l~~~~~~~~~~i-~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 243 YLESLQEKLEKLEKEI-EKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666655 35555556666777778888888888888888887773
No 249
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.53 E-value=10 Score=40.09 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=30.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
-|-.||-.||.|...||+.|+++..+..-|...++.+
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678899999999999999999988887777666554
No 250
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=81.49 E-value=47 Score=34.08 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
.+|.+....|...-+.|..-..+++.+.....+-|
T Consensus 104 ~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~l 138 (514)
T TIGR03319 104 ENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL 138 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444444444444444444333
No 251
>smart00338 BRLZ basic region leucin zipper.
Probab=81.48 E-value=7.5 Score=28.45 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (278)
-|..+|.+|+.++..|+.+.. ....+...|..|+..|.+
T Consensus 23 rKk~~~~~Le~~~~~L~~en~----~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENE----RLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 456788888888887776554 444444455555554443
No 252
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.07 E-value=19 Score=36.87 Aligned_cols=11 Identities=27% Similarity=0.389 Sum_probs=5.3
Q ss_pred HHHHHHHHHhh
Q 023690 115 LEVFRKTLVQS 125 (278)
Q Consensus 115 LE~FKk~LmqS 125 (278)
|..+|+.|+.+
T Consensus 427 L~~ikr~l~k~ 437 (569)
T PRK04778 427 LHEIKRYLEKS 437 (569)
T ss_pred HHHHHHHHHHc
Confidence 34455555544
No 253
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=81.02 E-value=23 Score=35.52 Aligned_cols=37 Identities=11% Similarity=0.202 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
.++.++..+..+|..+...|...+.+|.+++++|..-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~ 174 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLTG 174 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 5666666777777777777777777777777777654
No 254
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=80.95 E-value=36 Score=29.48 Aligned_cols=81 Identities=20% Similarity=0.259 Sum_probs=59.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
...+..+..++..|-.++.+=...+.+|++++...+ .+-....+.+++|.+|...|...+..+...|.-.+.+ ..
T Consensus 6 ~~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs----~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~L-d~ 80 (157)
T PF04136_consen 6 LDYLQQYREECDQLLDQTDEILDQLDELQEQYNSVS----EKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEEL-DP 80 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhH-HH
Confidence 344555556666666666666666666666665555 4455888899999999999999999999999888777 56
Q ss_pred HHhhcc
Q 023690 122 LVQSLK 127 (278)
Q Consensus 122 LmqSLq 127 (278)
+++.|+
T Consensus 81 itr~Ln 86 (157)
T PF04136_consen 81 ITRRLN 86 (157)
T ss_pred HHHHHc
Confidence 777775
No 255
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=80.93 E-value=48 Score=30.82 Aligned_cols=80 Identities=19% Similarity=0.319 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-------------------------------HHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQ-------------------------------AQADKERLSKEN 98 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--~rL~~-------------------------------a~ee~~kL~~E~ 98 (278)
+..|+++|.||++.|-.|+.-+...|..+- ..|++ .+|+...-....
T Consensus 59 ~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~ 138 (205)
T PF12240_consen 59 ASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKC 138 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhH
Confidence 445788899999999999998888877654 11111 022222223344
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
-.|.+.||.|+..|..=++.=|.|=|-.+.|..
T Consensus 139 qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~~~ 171 (205)
T PF12240_consen 139 QEMENRIKALHAQIAEKDAMIKVLQQRSRKDPG 171 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 567889999999999988888888888777764
No 256
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=80.78 E-value=22 Score=38.68 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=11.1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 102 TNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 102 a~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
.++..+-|+=...|+.|||+|.+.
T Consensus 212 maAle~kn~L~~e~~s~kk~l~~~ 235 (916)
T KOG0249|consen 212 MAALEDKNRLEQELESVKKQLEEM 235 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444455555555443
No 257
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=80.64 E-value=7.1 Score=36.83 Aligned_cols=57 Identities=12% Similarity=0.187 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 53 SALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
..|++-.-=+-..|.|+-.+|+.+...-- -+++..++++++|.+|+..-...|+.|.
T Consensus 40 ~~l~~ae~WR~~ii~EIs~kv~~Iqd~~L~E~~IRdLNDeINkL~rEK~~WE~rI~~LG 98 (255)
T PF06246_consen 40 KSLPEAEKWRRQIIKEISRKVTRIQDPSLGEFQIRDLNDEINKLIREKRHWERRIKELG 98 (255)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444444445566777777776655433 7888999999999999999999999987
No 258
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=80.60 E-value=24 Score=27.19 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=6.9
Q ss_pred HHHHHHHHhhhHHHHHH
Q 023690 101 LTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 101 La~TvKkL~rDvaKLE~ 117 (278)
|....+.|+.++++|..
T Consensus 77 l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 77 LEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444433
No 259
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=80.49 E-value=8.9 Score=28.13 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
.+..|+..|..++++-...+.+|+.++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei 47 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEI 47 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333333333333
No 260
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=80.43 E-value=13 Score=35.05 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.+.|.+++.|+..+..+|+.|..||+.+-..|..|.
T Consensus 70 ~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 70 QKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 445666667777777777777777777776666665
No 261
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=80.21 E-value=12 Score=39.28 Aligned_cols=60 Identities=23% Similarity=0.347 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.|++.-+|+|.-...|+.-...+. .|+....+++..|.+|++.....|..|.++|++|++
T Consensus 5 ~l~qlq~Erd~ya~~lk~e~a~~q----qr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~ 64 (617)
T PF15070_consen 5 SLKQLQAERDQYAQQLKEESAQWQ----QRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKN 64 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666788888888876555444 566699999999999999999999999999999743
No 262
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=79.92 E-value=17 Score=42.78 Aligned_cols=72 Identities=25% Similarity=0.446 Sum_probs=45.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+-+|+-.|+.++..||.++.+|..++++|....+ ..|. .++.....+..+|..+.+++...+-+|.-.|+-|
T Consensus 803 ~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~---~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL 877 (1822)
T KOG4674|consen 803 CESRIKELERELQKLKKKLQEKSSDLRELTNSLE---KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999999875433 3333 3344444444444444444444444444443333
No 263
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=79.89 E-value=29 Score=27.77 Aligned_cols=63 Identities=21% Similarity=0.283 Sum_probs=30.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
.+.+.|..+|...+..|+..+.+.+....+|+. -.+.+..+.+.-..|..+|.+|..=..+||
T Consensus 31 ~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~---------------~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 31 KATSLKYKKMKDIAAGLEKNLEDLNQKYEELQP---------------YLQQIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555444443333332 222333344444455555555555555554
No 264
>PRK10869 recombination and repair protein; Provisional
Probab=79.88 E-value=15 Score=37.67 Aligned_cols=54 Identities=9% Similarity=0.045 Sum_probs=29.7
Q ss_pred CCchhhHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 24 SDPFEQLDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 24 ~DP~EQLdlarkIts-~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
-+|..||++--.+.. ..+...+..+-.+...++.+|.+......++++++.-|+
T Consensus 137 l~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~ 191 (553)
T PRK10869 137 LKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQ 191 (553)
T ss_pred cCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 489999998777664 445555555555555555554444333333333333333
No 265
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=79.75 E-value=38 Score=36.36 Aligned_cols=51 Identities=18% Similarity=0.296 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
++-|+++....- .++..|=.++...|.++.++.+.++.+.+++..+..+|.
T Consensus 504 i~~A~~~~~~~~-~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 554 (782)
T PRK00409 504 IEEAKKLIGEDK-EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELE 554 (782)
T ss_pred HHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555543211 144444444444444444444444444444444444433
No 266
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=79.72 E-value=40 Score=38.37 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=32.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL-------SDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l-------~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
.++..++.++...++.+.+-...+..++.++..++..+ ..+|.++.++...+.+|...+...+..+.
T Consensus 882 ~~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~ 955 (1353)
T TIGR02680 882 ARAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAE 955 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444333 35555556655555555555554443333
No 267
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=79.65 E-value=25 Score=27.35 Aligned_cols=54 Identities=15% Similarity=0.177 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
-||--|.--..-+|..+-...+.....|+..+..-.+..+.|.++|..|...+.
T Consensus 6 ~qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 6 KQLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 366667666777777777777777777777777777777777777777776664
No 268
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=79.64 E-value=33 Score=33.97 Aligned_cols=85 Identities=15% Similarity=0.280 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---H----
Q 023690 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK---E---- 97 (278)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~---E---- 97 (278)
|+.++-..+-...+..++.+...|...+.+- ...+..+-++++.|...+. .++....++...|.+ +
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D~ 91 (364)
T TIGR00020 12 LTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDDE 91 (364)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 4555544444455556666666666666532 2333444445555544444 344444444433332 1
Q ss_pred --HHHHHHHHHHHhhhHHHHH
Q 023690 98 --NEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 98 --~~~La~TvKkL~rDvaKLE 116 (278)
+..+...++.|.+++.+||
T Consensus 92 e~~~~a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 92 ETFNELDAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 2345577888999999998
No 269
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.52 E-value=14 Score=41.32 Aligned_cols=70 Identities=29% Similarity=0.385 Sum_probs=50.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.-+.+.|..|+..|+..+.+|+++|.+|..-+.... +|+.....++..|..+++.|..+=|.|-|.=.+|
T Consensus 410 ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~----~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l 479 (1200)
T KOG0964|consen 410 KEQENILQKEIEDLESELKEKLEEIKELESSINETK----GRMEEFDAENTELKRELDELQDKRKELWREEKKL 479 (1200)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999999999988876666444 4445666666666666666666666666666665
No 270
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=79.51 E-value=6.5 Score=29.39 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
++++.....-++-..+...|...+.+|+.+++|||.
T Consensus 17 a~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 17 AQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 677777777888888999999999999999999985
No 271
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=79.51 E-value=19 Score=34.43 Aligned_cols=99 Identities=18% Similarity=0.346 Sum_probs=65.2
Q ss_pred CCchhhHHHHHHHH-----------HHH----HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 24 SDPFEQLDVARKIT-----------SIA----ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQ 88 (278)
Q Consensus 24 ~DP~EQLdlarkIt-----------s~A----~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ 88 (278)
.||.-+-+.+.++- +|- +...|.=+..++..+.+.|.+..+.+.+.+.++..++..|. ...
T Consensus 180 ~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~----~l~ 255 (344)
T PF12777_consen 180 KNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLA----ALQ 255 (344)
T ss_dssp TSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred cCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 56666666666653 111 12234446677777777777777777777777777775554 777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (278)
.+..+..+|+..|...++...+-+.+- ..|+.+|.++.
T Consensus 256 ~~~~~~~~e~~~l~~~~~~~~~kl~rA----~~Li~~L~~E~ 293 (344)
T PF12777_consen 256 KEYEEAQKEKQELEEEIEETERKLERA----EKLISGLSGEK 293 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccH----HHHHhhhcchh
Confidence 777888888888888888777644443 34777776654
No 272
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=79.43 E-value=12 Score=29.34 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=40.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
..|++.-+-.||.|++.|+-.+.+ |++++..++.++. .+=+....+...|.++-..=+++|.+|.
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~-------L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQE-------LQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357788888999999999887765 4455555555554 2223334455555555555555555553
No 273
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=79.37 E-value=19 Score=40.94 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
.-.+..++...|.++..+|.++.+.++.++.|++-+||..+..+++-+.
T Consensus 617 ~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 617 QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566778899999999999999999999999999999988876654
No 274
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=79.29 E-value=18 Score=28.81 Aligned_cols=63 Identities=24% Similarity=0.364 Sum_probs=42.3
Q ss_pred CCCChHHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 11 ~F~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
..+||++|...+ .++...+...|...-...|+.+...+...+.+-+....++..++..|+.++
T Consensus 56 ~~~lP~~l~~~~-------~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 118 (120)
T PF11740_consen 56 APDLPEALQDAL-------AELMARLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAEL 118 (120)
T ss_pred ccCCChhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345555554422 356666677777777777777777777777777777777777777777655
No 275
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=79.04 E-value=22 Score=39.23 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023690 62 KDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~ 81 (278)
+++.+.+|.+++..+..+..
T Consensus 464 ~~~~~~~L~d~le~~~~~~~ 483 (980)
T KOG0980|consen 464 VEEENTNLNDQLEELQRAAG 483 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 276
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=78.94 E-value=35 Score=28.15 Aligned_cols=42 Identities=26% Similarity=0.303 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
....++++|..++..|...|++|+-+.+.+|..-|.-.....
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~~~ 102 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGMSK 102 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCCCC
Confidence 667788888888888888899888887777777777666433
No 277
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=78.62 E-value=22 Score=35.16 Aligned_cols=27 Identities=15% Similarity=0.464 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+...+|.+.+..|...+++|..++..|
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l 401 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKEL 401 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444443
No 278
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=78.61 E-value=47 Score=33.93 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=50.4
Q ss_pred CCCCChHHHHhc---CCCCc-----------hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 023690 10 STFDLPEEVLQV---LPSDP-----------FEQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQI 73 (278)
Q Consensus 10 ~~F~lp~eil~v---LP~DP-----------~EQLdlarkIts~A~atRVs~LE~E~~~LR~~La--EKd~~i~~Lq~r~ 73 (278)
.||-|.|-+.-+ -|+.. -+||+-..+...+|+..++..-+..+..|+..|. .-++.+..-+.++
T Consensus 236 tD~tL~DfVAD~RApTPTaAAE~~vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~l 315 (440)
T COG1570 236 TDFTLADFVADLRAPTPTAAAELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRL 315 (440)
T ss_pred CCccHHHhhhhccCCCchHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 477777766533 22222 3466667777788999999998888888888887 6677777777777
Q ss_pred HHHHHHHH
Q 023690 74 ESIYSSLS 81 (278)
Q Consensus 74 s~le~~l~ 81 (278)
..++..|.
T Consensus 316 d~~~~rL~ 323 (440)
T COG1570 316 DELAIRLR 323 (440)
T ss_pred HHHHHHHH
Confidence 66665555
No 279
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=78.58 E-value=23 Score=25.83 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
..+....+....|..||+.|...+..|...+..|+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666654
No 280
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=78.57 E-value=26 Score=27.71 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
.++-.|-++..+-...+.+|+.+.+.+-.++. .++..-++...|..|-..|...++.|..++..+|.=-..++-.|
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~-~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIG-KLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 34444445555555555666666666665553 33332245566666666666666777666666665555555443
No 281
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=78.56 E-value=11 Score=29.92 Aligned_cols=67 Identities=28% Similarity=0.318 Sum_probs=36.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKL----GQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL----~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
...+-..||.||..|..+|.+=...-..| |.+|. .-+ ...-....+|..|-..|...|-+|.+.|.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~aL-------e~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRAL-------EKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566789999999999998544333333 44444 000 11122334455555555555555555444
Q ss_pred H
Q 023690 114 K 114 (278)
Q Consensus 114 K 114 (278)
-
T Consensus 79 ~ 79 (88)
T PF14389_consen 79 S 79 (88)
T ss_pred H
Confidence 3
No 282
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=78.54 E-value=22 Score=36.25 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
+..++.|...+-+.+...+..|..+-.++..+..++.+|-....+.-.+|+. |....-.|.+.|+.||..
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~y 281 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
No 283
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.40 E-value=33 Score=27.54 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL 108 (278)
...++|.+|..|..+-...++.|
T Consensus 50 ~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 50 ELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777766666655
No 284
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=78.36 E-value=13 Score=35.55 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 023690 115 LEVFRKTL 122 (278)
Q Consensus 115 LE~FKk~L 122 (278)
...|++.|
T Consensus 86 ~~~~~~~~ 93 (378)
T TIGR01554 86 VRAFIKGV 93 (378)
T ss_pred HHHHHHHh
Confidence 34455543
No 285
>PRK02793 phi X174 lysis protein; Provisional
Probab=78.21 E-value=12 Score=28.79 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 69 LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 69 Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+++|+..||..+. .-.+-+..|.+.--.....+-.|.+.|..|
T Consensus 6 ~e~Ri~~LE~~la----fQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L 48 (72)
T PRK02793 6 LEARLAELESRLA----FQEITIEELNVTVTAHEMEMAKLRDHLRLL 48 (72)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555553332 444455555555444444555555444433
No 286
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=78.18 E-value=50 Score=29.43 Aligned_cols=21 Identities=14% Similarity=0.340 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~ 81 (278)
++...+..+++++..-|..|.
T Consensus 75 ~~~~el~~~E~rl~~rE~~L~ 95 (201)
T PF12072_consen 75 ERRKELQRLEKRLQQREEQLD 95 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444555555555554444
No 287
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=78.10 E-value=29 Score=26.72 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+.+|+.-+.+=.+.+..|++++..+-.+.. .......++.+.-.+.-+.+...|+.+..-|..|
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344455555555555566555555555544 3333444444444444555555555555555444
No 288
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=78.09 E-value=53 Score=35.44 Aligned_cols=113 Identities=22% Similarity=0.262 Sum_probs=65.4
Q ss_pred CChHHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHH-HHHHH-HH-------HHHHHHHHHHHHHHHHHHHHH----
Q 023690 13 DLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESE-HSALR-SQ-------LAEKDSRIAELQSQIESIYSS---- 79 (278)
Q Consensus 13 ~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E-~~~LR-~~-------LaEKd~~i~~Lq~r~s~le~~---- 79 (278)
.++-+.+.-+|..-..-|++..+---..+..|+-.+..+ ...+| .. ..+.+.++.+|+..+.....-
T Consensus 377 ~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~ 456 (698)
T KOG0978|consen 377 ELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEM 456 (698)
T ss_pred HHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666655554455666666555443 33344 11 122334445555444333210
Q ss_pred -------------HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 80 -------------LS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 80 -------------l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
.+ --|..+++.|-+|-.|+...-+..|.|..+..+|+.-..+|-.+
T Consensus 457 ~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~ 518 (698)
T KOG0978|consen 457 ETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKAS 518 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 23457777888888888888888888888888887776666544
No 289
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=78.05 E-value=57 Score=30.00 Aligned_cols=65 Identities=18% Similarity=0.306 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
|.|+..|+.+..++...+.++..=+..+|..+. -.-.....+..++..|++.+..-+..+.+.++
T Consensus 22 E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 22 EEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 345555555555555544444444444444333 12223344455666666666655555554443
No 290
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=77.99 E-value=13 Score=36.23 Aligned_cols=63 Identities=24% Similarity=0.417 Sum_probs=36.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DK---------LGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-~r---------L~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
.+|..||..+.+|+..-..|.= ++.+||++|+ .| ......||..|.+.-++|..+-.||..|+
T Consensus 18 qKIqelE~QldkLkKE~qQrQf-------QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQF-------QLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 5788999999999865554443 3455566666 11 12222344445555555555555555554
No 291
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=77.85 E-value=58 Score=33.55 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=7.0
Q ss_pred HHHHHHHhhhHHHHH
Q 023690 102 TNTVRKLQRDVSKLE 116 (278)
Q Consensus 102 a~TvKkL~rDvaKLE 116 (278)
-.++++....|..++
T Consensus 146 ~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 146 REQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555433
No 292
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=77.80 E-value=82 Score=31.72 Aligned_cols=65 Identities=18% Similarity=0.327 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH-------HHHHh
Q 023690 54 ALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNT-------VRKLQ 109 (278)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~le~~l~-----------------~rL~~a~ee~~kL~~E~~~La~T-------vKkL~ 109 (278)
.+|..+.|+.....+|+-+-..|-.+|- +-+.+..|||..|+=.-++|... ..+||
T Consensus 89 ~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~Ln 168 (401)
T PF06785_consen 89 KIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLN 168 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHH
Confidence 3344455555555555544444433332 22334555555544444444333 34566
Q ss_pred hhHHHHHHH
Q 023690 110 RDVSKLEVF 118 (278)
Q Consensus 110 rDvaKLE~F 118 (278)
|+++.--+.
T Consensus 169 rELaE~lay 177 (401)
T PF06785_consen 169 RELAEALAY 177 (401)
T ss_pred HHHHHHHHH
Confidence 666554333
No 293
>PLN03188 kinesin-12 family protein; Provisional
Probab=77.79 E-value=31 Score=39.51 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=45.1
Q ss_pred HHHHHHhhhhhHHH-----------HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESE-----------HSALRSQLAEKDS---RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 38 s~A~atRVs~LE~E-----------~~~LR~~LaEKd~---~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (278)
.+|||.-++.|-.| -..|+.||-+-.+ ..+||==|+-..|.++. .|.++-+....|+..|-.
T Consensus 1157 ~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~----~a~~r~~~~eqe~~~~~k 1232 (1320)
T PLN03188 1157 INALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALT----VAQKRAMDAEQEAAEAYK 1232 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 35555555555444 3344444432222 22344444444444444 444455566666666666
Q ss_pred HHHHHhhhH-HHHHHHHHHHHhh
Q 023690 104 TVRKLQRDV-SKLEVFRKTLVQS 125 (278)
Q Consensus 104 TvKkL~rDv-aKLE~FKk~LmqS 125 (278)
.+.||.|.- -.+.++|..|-.|
T Consensus 1233 ~~~klkrkh~~e~~t~~q~~aes 1255 (1320)
T PLN03188 1233 QIDKLKRKHENEISTLNQLVAES 1255 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 677777766 6677777766444
No 294
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.56 E-value=35 Score=27.39 Aligned_cols=61 Identities=21% Similarity=0.271 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 67 AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
..|++.+..++.-|. ++...|.....+=.+.+.....-+++|..++..|...+..+..-|+
T Consensus 42 ~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~ 105 (126)
T PF13863_consen 42 QELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLE 105 (126)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666 7777888888888888888888888888888888888777765554
No 295
>PF13864 Enkurin: Calmodulin-binding
Probab=77.55 E-value=5.5 Score=31.70 Aligned_cols=56 Identities=21% Similarity=0.384 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 60 aEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.|+...+..|+.+...|..+|+ +|-.. -+-.....-+..|...++-|..|+.+|+.
T Consensus 40 eER~~lL~~Lk~~~~el~~ey~-~lp~~-~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 40 EERQELLEGLKKNWDELNKEYQ-KLPFS-IDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4788899999999999999998 44433 22444555566666666666777666654
No 296
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=77.47 E-value=36 Score=31.21 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=51.8
Q ss_pred hcCCCCch-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 023690 20 QVLPSDPF-EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK-- 96 (278)
Q Consensus 20 ~vLP~DP~-EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~-- 96 (278)
..+|..+- .|..+.+.-+.++=+.+.+. ..++.++.+|-+.|.++.+++..||.. .++++..+++.+.+..
T Consensus 44 ~~~~~~~~~~~~e~~k~~~~i~da~~dq~-----~~~q~e~~~~lk~~a~~~E~lk~lE~~-kae~k~~~e~re~~l~~~ 117 (192)
T COG3334 44 AELAEKKAAAQSEIEKFCANIADAAADQL-----YALQKELLEKLKDLAEVNERLKALEKK-KAELKDLEEEREGILRSK 117 (192)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444443 67777766665555444433 667777778888888888888888766 5666666666666652
Q ss_pred --HHHHHHHHHHHHh
Q 023690 97 --ENEALTNTVRKLQ 109 (278)
Q Consensus 97 --E~~~La~TvKkL~ 109 (278)
|.+.|..+.++.-
T Consensus 118 qae~~klv~iY~~Mk 132 (192)
T COG3334 118 QAEDGKLVKIYSKMK 132 (192)
T ss_pred HhhhhHHHHHHHcCC
Confidence 3333555555443
No 297
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=77.47 E-value=17 Score=33.21 Aligned_cols=42 Identities=12% Similarity=0.278 Sum_probs=29.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~-------~Lq~r~s~le~~l~ 81 (278)
.+|.+|-+||..+..|-.++.++-+.+. .|..+|+.++..|.
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~ 124 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIK 124 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHH
Confidence 4778888888888888888888766665 44455555555544
No 298
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.46 E-value=9.1 Score=28.72 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhH
Q 023690 91 KERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDv 112 (278)
...+.+|+..|..+|-++++.|
T Consensus 16 i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 16 INTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 299
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.43 E-value=64 Score=30.28 Aligned_cols=93 Identities=20% Similarity=0.289 Sum_probs=45.3
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 25 DPFEQLDVARKITSIAISTRVSDLESE-----------HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER 93 (278)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E-----------~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~k 93 (278)
+|++.+.-+.-..+.++...+..|+.. +..||.-+.+++..-.+|+.+...+...-.+| .++.++..+
T Consensus 110 ~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~ 188 (243)
T cd07666 110 DSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEK 188 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHH
Confidence 455555544444455555544444433 66677777777766566655555444421123 233333333
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 94 LSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
|...-....+ .+..|+.+.+..|+.
T Consensus 189 ~e~kve~a~~---~~k~e~~Rf~~~k~~ 213 (243)
T cd07666 189 LEDKVECANN---ALKADWERWKQNMQT 213 (243)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 3333333322 244566665554443
No 300
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=77.42 E-value=3.7 Score=31.03 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIA 67 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~ 67 (278)
-|..|+.-||+||.+++..++.|..+-.
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999999887654
No 301
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.24 E-value=57 Score=35.66 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 97 ENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 97 E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
+...+......+..+..+|+..++.+
T Consensus 261 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (1042)
T TIGR00618 261 LLKQLRARIEELRAQEAVLEETQERI 286 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555554443
No 302
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=77.11 E-value=57 Score=29.54 Aligned_cols=12 Identities=33% Similarity=0.509 Sum_probs=4.4
Q ss_pred hhHHHHHHHHHH
Q 023690 47 DLESEHSALRSQ 58 (278)
Q Consensus 47 ~LE~E~~~LR~~ 58 (278)
.||.++..+|.+
T Consensus 147 ~le~~l~~~k~~ 158 (221)
T PF05700_consen 147 RLEKELAKLKKE 158 (221)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 303
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=77.08 E-value=0.77 Score=47.81 Aligned_cols=90 Identities=20% Similarity=0.423 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHH----------
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNT---------- 104 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~T---------- 104 (278)
.+.+...|-++++.||+.+.+++....+++.++..++.++. .-|...-++...|..|.|.|-..
T Consensus 237 ~~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ 316 (713)
T PF05622_consen 237 LSVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENE 316 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 33455667778888888888888888888888887777764 22223334455566666655333
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 105 VRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 105 vKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
|.+...-+.-++.||+.+ +.|.+++.
T Consensus 317 ve~YKkKLed~~~lk~qv-k~Lee~N~ 342 (713)
T PF05622_consen 317 VEKYKKKLEDLEDLKRQV-KELEEDNA 342 (713)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 333333333444555554 66777664
No 304
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=76.99 E-value=57 Score=30.64 Aligned_cols=55 Identities=31% Similarity=0.362 Sum_probs=26.9
Q ss_pred CChHHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 023690 13 DLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSAL--RSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 13 ~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~L--R~~LaEKd~~i~~Lq~r~s~l 76 (278)
.|-+||-.||=.+|.+=.| ++.+|-.-|+.-..+| +++|++| +.+.+|.+.+...
T Consensus 2 sL~Eeikrvl~enpeilvd--------vL~~Rpeilye~l~kL~pwq~latk-~dve~l~~e~E~~ 58 (231)
T COG5493 2 SLAEEIKRVLLENPEILVD--------VLTQRPEILYEVLAKLTPWQQLATK-QDVEELRKETEQR 58 (231)
T ss_pred CHHHHHHHHHHhCcHHHHH--------HHHhChHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHH
Confidence 4567777777777744333 3344444444444443 3444444 3344444444333
No 305
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=76.74 E-value=35 Score=33.76 Aligned_cols=89 Identities=19% Similarity=0.310 Sum_probs=44.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHH------HHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKE---RLSK------ENEALTNT 104 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~---kL~~------E~~~La~T 104 (278)
+..++..++.++..|...+.+- .....++-+++..|+..+. .++....++.. .|.+ -...+...
T Consensus 4 ~~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e 83 (359)
T PRK00591 4 MLDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEE 83 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 3445666666666666655432 1222333334444443333 33333333322 2221 12344466
Q ss_pred HHHHhhhHHHHHH-HHHHHHhhcccc
Q 023690 105 VRKLQRDVSKLEV-FRKTLVQSLKDD 129 (278)
Q Consensus 105 vKkL~rDvaKLE~-FKk~LmqSLq~d 129 (278)
+.+|..+|.+||. |+..||-+-..|
T Consensus 84 ~~~l~~~l~~~e~~l~~~ll~~~~~D 109 (359)
T PRK00591 84 LKELEERLEELEEELKILLLPKDPND 109 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 7888889988886 666666553333
No 306
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.68 E-value=60 Score=31.67 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
++.++-.-++.|-.-|++|..--.-||.-||+-+-|
T Consensus 99 dlsqt~aikeql~kyiReLEQaNDdLErakRati~s 134 (333)
T KOG1853|consen 99 DLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYS 134 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhh
Confidence 333343444444444444444444444444443333
No 307
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=76.67 E-value=34 Score=35.27 Aligned_cols=78 Identities=21% Similarity=0.289 Sum_probs=46.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD-KERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee-~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (278)
|.-|=+++..||.++++=......|+++-+.|..... ...+. +..|+.|+..|......|..++.+|...=..|.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~----~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQ----SIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344466777777777777777777777666654333 22222 234555666666666666666666665555555
Q ss_pred hhc
Q 023690 124 QSL 126 (278)
Q Consensus 124 qSL 126 (278)
+.|
T Consensus 137 ~~l 139 (472)
T TIGR03752 137 RRL 139 (472)
T ss_pred HHH
Confidence 555
No 308
>PRK04406 hypothetical protein; Provisional
Probab=76.47 E-value=21 Score=27.77 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
+.|.+||.|++-.|..+. ..++...+.+++.+.|...++.|..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe----~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 11 ERINDLECQLAFQEQTIE----ELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665554 4455555566666666666666644
No 309
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=76.40 E-value=40 Score=32.37 Aligned_cols=40 Identities=23% Similarity=0.155 Sum_probs=23.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
..||.-|=.|++.|-...+.+.+.+..-=+.|-..|..|+
T Consensus 102 sDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~ 141 (271)
T PF13805_consen 102 SDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQ 141 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566666666666666666665555544455555555555
No 310
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.40 E-value=40 Score=33.25 Aligned_cols=56 Identities=25% Similarity=0.432 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023690 65 RIAELQSQIESIYSSLS---------------------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~---------------------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (278)
....||-+++.+++.++ +-+....++|.||.-++..|-++...|..|. |.|+.+.-
T Consensus 52 ~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeNlkLrTd~eaL~dq~adLhgD~---elfReTeA 128 (389)
T KOG4687|consen 52 RAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEENLKLRTDREALLDQKADLHGDC---ELFRETEA 128 (389)
T ss_pred HHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHhchH---HHHHHHHH
Confidence 34566777777776655 3345667888999999999999999998886 55655543
No 311
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=76.37 E-value=46 Score=32.39 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENE 99 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~ 99 (278)
-++.||.+...++.+-..-..-|.+|+.+-..||.+-. .||.+|.++|+=|..|.+
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd 157 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD 157 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555544444433333444555544444444322 677788888877766544
No 312
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=76.28 E-value=27 Score=34.66 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=55.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQ-IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r-~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
+.|-.+||.|..-||.+|-=-.+...||..= |+++-..||.+.....+|+.+|+.+++.+.+..-.+.-++.+
T Consensus 136 Sere~~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~~Eq~er 209 (383)
T KOG4074|consen 136 SEREAELERELDLLRKQLNIQTKVNSELKRLLVASVGDDLQGQVEALTEDKVQLAHRVDEYMGNLMVEDEQSER 209 (383)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 3566689999999999998777777777643 456666777777888899999999999888777665544444
No 313
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=76.23 E-value=33 Score=33.70 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=19.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 023690 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (278)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d~~~ 132 (278)
.....|.||+.-.++.=.++++..++....
T Consensus 373 ~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~ 402 (458)
T COG3206 373 VQLRELEREAEAARSLYETLLQRYQELSIQ 402 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344556677766666667777777766543
No 314
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=76.12 E-value=52 Score=30.39 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~ 103 (278)
+.+||..=+||-..|-+--.-+......|| .-++...+.|.||++||..|-.
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444333333333333333 3344777888899999888864
No 315
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.07 E-value=38 Score=27.01 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
+|.+|.++-++|..+.+ ..-.....+|++|..|-..-...++.|
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555554 111123344555555555555444444
No 316
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=75.95 E-value=22 Score=35.90 Aligned_cols=94 Identities=18% Similarity=0.287 Sum_probs=68.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQA---QADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~La-EKd~~i~~Lq~r~s~le~~l~~rL~~a---~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
..+=.+|+..+=.++..|...+. +.+..|++|++++..++.++. +|..= .=+..++.++-..+.+++..|-.|..
T Consensus 117 ~~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~-~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr 195 (478)
T PF11855_consen 117 FVGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEID-RLEAGDVPVLDDTQARERARQILQLARELPADFR 195 (478)
T ss_pred ccccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999998 999999999999999999996 22211 11235666777777888888888887
Q ss_pred HHHHH----HHHHHhhcccccCC
Q 023690 114 KLEVF----RKTLVQSLKDDEDA 132 (278)
Q Consensus 114 KLE~F----Kk~LmqSLq~d~~~ 132 (278)
..|.- -+.|...+.+++..
T Consensus 196 ~V~~~~r~l~r~lr~~i~~~~~~ 218 (478)
T PF11855_consen 196 RVEDNFRELDRALRERIIDWDGS 218 (478)
T ss_pred HHHHHHHHHHHHHHHHHhhcccc
Confidence 76543 34455555555543
No 317
>PRK00106 hypothetical protein; Provisional
Probab=75.94 E-value=86 Score=32.69 Aligned_cols=40 Identities=13% Similarity=0.307 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
.++..+|.+....|...-+.|..--..++.++....+-|.
T Consensus 121 ekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 121 SSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444443
No 318
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=75.86 E-value=4.6 Score=37.29 Aligned_cols=32 Identities=34% Similarity=0.502 Sum_probs=24.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (278)
...|+..||.-|..|=.+|+|||..|.-||.|
T Consensus 134 a~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 134 ANRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677788888888888888888888888754
No 319
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=75.79 E-value=29 Score=25.88 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS-KENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~-~E~~~La~TvKkL~rDvaKLE 116 (278)
+|...|.+++..+..++..|. +-.-|...+- .++..+...|+....++.+|+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~----qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLK----QMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777766666665554 3333333333 777888888888888877764
No 320
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=75.78 E-value=26 Score=27.23 Aligned_cols=30 Identities=17% Similarity=0.105 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+..--..+..+|..|.+|+.++-.++..+.
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~ 54 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVK 54 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566778888888877777775554
No 321
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=75.73 E-value=45 Score=37.29 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
+...+|.++.....++.+-...+..++..+...+..+
T Consensus 622 ~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1201)
T PF12128_consen 622 RQEELEKQLKQINKKIEELKREITQAEQELKQAEQDL 658 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 3445555544444444444444444444444444333
No 322
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=75.64 E-value=26 Score=36.66 Aligned_cols=60 Identities=27% Similarity=0.421 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH-HHHHH---HHHHHHHHHHHhhhHHHHH
Q 023690 57 SQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKE-RLSKE---NEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 57 ~~LaEKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~-kL~~E---~~~La~TvKkL~rDvaKLE 116 (278)
..|.+.++.+..+..++..||.++. +||...++..- .|.+| +..+.+.|+.|..+|+.++
T Consensus 148 ~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~ 217 (546)
T KOG0977|consen 148 SRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLK 217 (546)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3344555555566666666665554 33332222221 12222 2445566666666666554
No 323
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=75.64 E-value=18 Score=32.92 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=6.5
Q ss_pred hhhhhHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQL 59 (278)
Q Consensus 44 RVs~LE~E~~~LR~~L 59 (278)
|+..|+.+..+|++-|
T Consensus 140 rl~~l~~~~~rl~~ll 155 (262)
T PF14257_consen 140 RLKNLEAEEERLLELL 155 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444333
No 324
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=75.53 E-value=62 Score=32.15 Aligned_cols=90 Identities=19% Similarity=0.317 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------
Q 023690 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-------- 96 (278)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~-------- 96 (278)
|+++|...-=.-.+..++.+...|..+|.+- ...+.+|-++++.|...+. .++....++...|.+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~ 91 (367)
T PRK00578 12 LDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDE 91 (367)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 4455544444445556666666666666431 2334455555555555554 444444444333222
Q ss_pred -HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023690 97 -ENEALTNTVRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 97 -E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (278)
-+..+...++.|...+.+|| ++ .|+
T Consensus 92 el~~~a~~e~~~l~~~l~~le-~~-~ll 117 (367)
T PRK00578 92 ETLAEAEAELKALEKKLAALE-LE-RLL 117 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HH-Hhc
Confidence 22345577788888888888 43 444
No 325
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.29 E-value=24 Score=34.38 Aligned_cols=64 Identities=25% Similarity=0.433 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
+||++...|-.+..+=+..+..|++.+..+...+. ..+.+|..+.+.|.++.-.|.|++.|||.
T Consensus 119 k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~-------~qq~Els~~L~~l~~~~~~~s~~~~k~es 182 (300)
T KOG2629|consen 119 KLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLA-------TQQSELSRALASLKNTLVQLSRNIEKLES 182 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 56776666666666555556666655555444332 22337777777777777777777777764
No 326
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=75.29 E-value=32 Score=33.08 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=22.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 105 VRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 105 vKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
++.|.+-+.+++.||+.||..|.+==+
T Consensus 156 ~~el~~K~~~~k~~~e~Ll~~LgeFLe 182 (268)
T PF11802_consen 156 FQELKTKIEKIKEYKEKLLSFLGEFLE 182 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888899999999999999987533
No 327
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=75.28 E-value=19 Score=30.12 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=32.4
Q ss_pred HHhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRS------QLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 42 atRVs~LE~E~~~LR~------~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
..||..||.-+..++. -+.|....|.+.+.+|...+.+|.
T Consensus 42 ~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~ 87 (115)
T PF06476_consen 42 QHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELK 87 (115)
T ss_pred HHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3688999998888875 355788888888888888888887
No 328
>PRK04325 hypothetical protein; Provisional
Probab=75.25 E-value=21 Score=27.57 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023690 67 AELQSQIESIYSSLS 81 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~ 81 (278)
..+++|+..||..+.
T Consensus 5 ~~~e~Ri~~LE~klA 19 (74)
T PRK04325 5 QEMEDRITELEIQLA 19 (74)
T ss_pred hhHHHHHHHHHHHHH
Confidence 345566666664444
No 329
>PF13514 AAA_27: AAA domain
Probab=75.24 E-value=29 Score=38.16 Aligned_cols=60 Identities=18% Similarity=0.346 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 62 KDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
+...|..+-+++..++.++. .....+.++...+..+...|...+++|..+..+|+.+++.
T Consensus 148 ~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~ 213 (1111)
T PF13514_consen 148 RKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRA 213 (1111)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777777777776 6677788888888999999999999999999999988765
No 330
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=75.14 E-value=51 Score=32.72 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHhh
Q 023690 99 EALTNTVRKLQRDVSKLEV-FRKTLVQS 125 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~-FKk~LmqS 125 (278)
..+...++.|..+|.+||. ++..||-+
T Consensus 78 ~~a~~e~~~l~~~~~~~e~~l~~~ll~~ 105 (360)
T TIGR00019 78 EMAKEELEELEEKIEELEEQLKVLLLPK 105 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455677788888888875 55555544
No 331
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=75.09 E-value=14 Score=26.27 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
....++..|.+||+.|...|..|..-+
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~kl 42 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEKL 42 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445667778888888887777776543
No 332
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=74.97 E-value=33 Score=34.27 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=58.2
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (278)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~ 98 (278)
..+-|.++-+-+- =|.+=.++-..+||..+.|+-.....+|+-+..-+. +.....+||..|+
T Consensus 194 ~~~yp~n~~~~~~-----------irasvisa~~eklR~r~eeeme~~~aeq~slkRt~E-------eL~~G~~kL~~~~ 255 (365)
T KOG2391|consen 194 AEPYPPNASGKLV-----------IRASVISAVREKLRRRREEEMERLQAEQESLKRTEE-------ELNIGKQKLVAMK 255 (365)
T ss_pred CCcCCCCcccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHhhHHHHHHHH
Confidence 3456666666554 233445556677777777666555555554444444 4456778999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 023690 99 EALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
..|.+++-+|+.+.+-|.+-++.
T Consensus 256 etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 256 ETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998887766
No 333
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=74.88 E-value=51 Score=31.68 Aligned_cols=63 Identities=22% Similarity=0.447 Sum_probs=45.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
.+|...+.|...+...|.++...+.++++|+.. +.+||.++..+-.+|.+.-..+...|+|..
T Consensus 200 r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e----~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 200 RKLELKKEELEELEEELKQKEKEVKEIKERITE----MKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345555667777777777777777777777753 336777888888888888888888887764
No 334
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=74.87 E-value=43 Score=30.78 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIES 75 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~ 75 (278)
+-|+.+||.+|++=|..+...++..+.
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888999999888888888877775
No 335
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=74.79 E-value=24 Score=39.54 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
+-.|+..|+++|.+..+...+++.++...+..+. ...+-..++.+++..|...++.|..++++...+
T Consensus 147 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (1123)
T PRK11448 147 LQQEVLTLKQQLELQAREKAQSQALAEAQQQELV----ALEGLAAELEEKQQELEAQLEQLQEKAAETSQE 213 (1123)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4455556666665555555555555555554443 222333344445555555555555555444444
No 336
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=74.78 E-value=68 Score=34.51 Aligned_cols=40 Identities=20% Similarity=0.344 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023690 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq 70 (278)
++-|++|.. ....++..|=.++...|.++.++.+.+..++
T Consensus 499 i~~A~~~~~-~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~ 538 (771)
T TIGR01069 499 IEQAKTFYG-EFKEEINVLIEKLSALEKELEQKNEHLEKLL 538 (771)
T ss_pred HHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345655542 2333444444444444444444444333333
No 337
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=74.48 E-value=46 Score=28.28 Aligned_cols=71 Identities=24% Similarity=0.226 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
+|-.....|-++|+-=.+.|..|++.+...+..|. +-.+....|.++++.+.+.+.+++.=.+.+++-.
T Consensus 24 ~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le-----------~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 24 QLLDRKRALERQLAANLHQLELLQEEIEKEEAALE-----------RDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 33344445555555555566667776666666554 2233344566677777777776665446666654
Q ss_pred cc
Q 023690 127 KD 128 (278)
Q Consensus 127 q~ 128 (278)
..
T Consensus 93 ~~ 94 (160)
T PF13094_consen 93 DS 94 (160)
T ss_pred cc
Confidence 33
No 338
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=74.35 E-value=18 Score=40.85 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=45.3
Q ss_pred HHHHHHHHHHH------HHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 023690 31 DVARKITSIAI------STRVSDLESEHSALRSQLAEKDS-RIAELQSQIESIYSSLS-------DKLGQAQADKERLS 95 (278)
Q Consensus 31 dlarkIts~A~------atRVs~LE~E~~~LR~~LaEKd~-~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~ 95 (278)
|-|+||..+|+ +.=+..|-.|+..||.+|..+++ ...+|++|+..+|.-+. .||+..++-+..++
T Consensus 346 drAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 346 DRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 67899999987 34456788899999999997554 45778888877776544 45544444443333
No 339
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=74.33 E-value=10 Score=38.26 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 99 EALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
++++..++.|+.+|.-||.+-|+|.--
T Consensus 245 ~~~~~~i~~lq~EV~~LEeLsrqLFLE 271 (462)
T KOG2417|consen 245 NTLSSDIKLLQQEVEPLEELSRQLFLE 271 (462)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777777543
No 340
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=74.25 E-value=31 Score=35.03 Aligned_cols=74 Identities=24% Similarity=0.429 Sum_probs=53.8
Q ss_pred chh--hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 26 PFE--QLDVARKITSIAISTRVSDLESEHSALRSQLA-----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (278)
Q Consensus 26 P~E--QLdlarkIts~A~atRVs~LE~E~~~LR~~La-----EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~ 98 (278)
||| =|++|..-....+.+|+..||-++-.+=+.|. ++-+++..+.+++..|..-.+ ...|+...|.++.
T Consensus 175 PFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvq----kvRDeLe~LLddd 250 (414)
T KOG2662|consen 175 PFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQ----KVRDELEELLDDD 250 (414)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHhcCh
Confidence 444 58889888899999999999999766655553 556666777777777665554 6677777777776
Q ss_pred HHHHH
Q 023690 99 EALTN 103 (278)
Q Consensus 99 ~~La~ 103 (278)
+.|++
T Consensus 251 ~Dma~ 255 (414)
T KOG2662|consen 251 DDMAE 255 (414)
T ss_pred HHHHH
Confidence 66665
No 341
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=74.24 E-value=7.5 Score=38.11 Aligned_cols=75 Identities=35% Similarity=0.442 Sum_probs=12.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
+.++|+.|++++..|-..|++-...|.+|...|..++..|. ..+.........|+..-+.|.-.|-.|.+
T Consensus 54 lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLks 133 (326)
T PF04582_consen 54 LSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKS 133 (326)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhh
Confidence 45566666666666666666655555555555555555444 34444444555666666666666666666
Q ss_pred hHHHH
Q 023690 111 DVSKL 115 (278)
Q Consensus 111 DvaKL 115 (278)
||+-+
T Consensus 134 dVSt~ 138 (326)
T PF04582_consen 134 DVSTQ 138 (326)
T ss_dssp HHHHH
T ss_pred hhhhh
Confidence 66544
No 342
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.16 E-value=42 Score=32.11 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=9.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLA 60 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La 60 (278)
+|..-+..+..++..++++|.
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~ 186 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLN 186 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444
No 343
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=74.15 E-value=26 Score=32.20 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
|..+|.+|-.++.++...+...+..+-.|+.+|
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444444444444444444444333
No 344
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=74.09 E-value=22 Score=29.45 Aligned_cols=47 Identities=19% Similarity=0.333 Sum_probs=33.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 71 SQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 71 ~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
+++..||.++. +.+....+....|.+||..|.---.+|..-|.+++.
T Consensus 8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444 444578888888999999998888888887777765
No 345
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=74.05 E-value=3.2 Score=40.58 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
...-+..+|...-..++-+|..|++-|..||.
T Consensus 123 ~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 123 ALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 44445567777778888888888888888764
No 346
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=73.96 E-value=7.2 Score=35.68 Aligned_cols=35 Identities=17% Similarity=0.411 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~ 79 (278)
...+|++.-.|+..+..++..+++||++.+.++..
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~ 172 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKL 172 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666666555555433
No 347
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=73.90 E-value=77 Score=29.54 Aligned_cols=71 Identities=23% Similarity=0.279 Sum_probs=40.7
Q ss_pred CCCChHHHHhcCCCCc--hhh-------HHHHHHHHHHHHHHhhh----hhHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 11 TFDLPEEVLQVLPSDP--FEQ-------LDVARKITSIAISTRVS----DLES---EHSALRSQLAEKDSRIAELQSQIE 74 (278)
Q Consensus 11 ~F~lp~eil~vLP~DP--~EQ-------LdlarkIts~A~atRVs----~LE~---E~~~LR~~LaEKd~~i~~Lq~r~s 74 (278)
+||+-+-+|.-||.+. .++ |.-.-.+++.-+...|+ ..-. ++..|+.+|.+=-..|..+++++.
T Consensus 12 ~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~ 91 (291)
T PF10475_consen 12 DFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLK 91 (291)
T ss_pred CCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988899999983 222 22222333333333222 1221 255666666666666777777766
Q ss_pred HHHHHHH
Q 023690 75 SIYSSLS 81 (278)
Q Consensus 75 ~le~~l~ 81 (278)
.++..+.
T Consensus 92 ~~~~~~~ 98 (291)
T PF10475_consen 92 SADENLT 98 (291)
T ss_pred HHHHHhH
Confidence 6666554
No 348
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=73.86 E-value=31 Score=35.80 Aligned_cols=64 Identities=16% Similarity=0.286 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 63 DSRIAELQSQIESIYSSLS---DKLGQAQADKER-----------LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~k-----------L~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
...+.++++|+..|+..=. ..+.++.++..+ ...-++.|.+-.+.+..|++.|+.-.+.=+..|
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~D~~~L 267 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRL 267 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHhHHHHH
Confidence 3345555566655554311 233344444444 444444455555555555555655544433333
No 349
>PRK11519 tyrosine kinase; Provisional
Probab=73.81 E-value=40 Score=35.41 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=18.3
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 104 TVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
....|.||+.--+.+=..|++.+++-.-
T Consensus 371 ~~~~L~Re~~~~~~lY~~lL~r~~e~~i 398 (719)
T PRK11519 371 EIVRLTRDVESGQQVYMQLLNKQQELKI 398 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3446667777777766677777766543
No 350
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=73.77 E-value=34 Score=37.25 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=37.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLS 95 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~ 95 (278)
+-|++|.+.|++.|.+-.+...++++.+..+..+++ +|....++++.++.
T Consensus 707 sllraE~~~l~~~le~e~nr~~~~~~e~~~~qeE~~~l~~r~~~le~e~r~~k 759 (961)
T KOG4673|consen 707 SLLRAEQGQLSKSLEKERNRAAENRQEYLAAQEEADTLEGRANQLEVEIRELK 759 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999998777778888888888877777 55555555555443
No 351
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=73.76 E-value=33 Score=36.27 Aligned_cols=92 Identities=15% Similarity=0.186 Sum_probs=63.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHH
Q 023690 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------------------------DKLGQAQAD 90 (278)
Q Consensus 35 kIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------------------------~rL~~a~ee 90 (278)
|-.-.-||.|+.-+|-||+.|+....-|.+.|+.|+.+-..|+..+. .||.....|
T Consensus 589 kDlekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKE 668 (790)
T PF07794_consen 589 KDLEKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKE 668 (790)
T ss_pred cchhhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467789999999999999999999999999998887777665543 122222222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
+=--.||--.|..+.-.+.-.++-|+..-|+-+++-
T Consensus 669 Kwv~KKe~t~le~qAaEvesNlaLidqi~kaaIdlt 704 (790)
T PF07794_consen 669 KWVAKKEYTVLEGQAAEVESNLALIDQITKAAIDLT 704 (790)
T ss_pred HHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222235555666666777777777777777766664
No 352
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=73.65 E-value=31 Score=27.54 Aligned_cols=60 Identities=18% Similarity=0.379 Sum_probs=40.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (278)
|+.++..||.+.|.+++ ++|.|+-.||.+.. ..||......|+.++=+...|-.|-+...
T Consensus 2 KleKi~~eieK~k~Kia-------e~Q~rlK~Le~qk~-------------E~EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKIA-------ELQARLKELEAQKT-------------EAENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred hHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 55667777777775554 45555555554333 44677778889999888888888866653
No 353
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.59 E-value=31 Score=38.03 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=26.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
++...+..|+-|.+.|..++.++-..+..|.++++-|..+|-
T Consensus 675 ~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 675 NLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555666666666666666666666666666666666664
No 354
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=73.54 E-value=33 Score=30.01 Aligned_cols=56 Identities=20% Similarity=0.254 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.|++.+.=-|+|-+--.+-|. =|.+.. +.+..|.++|..|.+.|++|..+++.+--
T Consensus 45 ~reEVvrlKQrRRTLKNRGYA~sCR~KRv-~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~ 102 (135)
T KOG4196|consen 45 SREEVVRLKQRRRTLKNRGYAQSCRVKRV-QQKHELEKEKAELQQQVEKLKEENSRLRR 102 (135)
T ss_pred CHHHHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555444444433333333 344443 34578999999999999999999887643
No 355
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.43 E-value=58 Score=34.31 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
+.=|+.++..|+++|.+-++.+.+.+++.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44577777888888888777777777665
No 356
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=73.39 E-value=14 Score=37.99 Aligned_cols=13 Identities=8% Similarity=0.353 Sum_probs=5.4
Q ss_pred hhhhhHHHHHHHH
Q 023690 44 RVSDLESEHSALR 56 (278)
Q Consensus 44 RVs~LE~E~~~LR 56 (278)
|...||.+++.||
T Consensus 77 kasELEKqLaaLr 89 (475)
T PRK13729 77 TAAQMQKQYEEIR 89 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 357
>PRK10869 recombination and repair protein; Provisional
Probab=73.27 E-value=44 Score=34.29 Aligned_cols=50 Identities=12% Similarity=0.172 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHhhcccccC
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK-----LEVFRKTLVQSLKDDED 131 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK-----LE~FKk~LmqSLq~d~~ 131 (278)
..|....++..+|.++.+.|...++++...|++ .+.|.+.|.+-|.+=.-
T Consensus 334 ~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~L~m 388 (553)
T PRK10869 334 QQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHELSM 388 (553)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 344555666778888888888888888888773 57788888777766543
No 358
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.26 E-value=46 Score=35.42 Aligned_cols=63 Identities=19% Similarity=0.338 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHhhccc
Q 023690 66 IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE---VFRKTLVQSLKD 128 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE---~FKk~LmqSLq~ 128 (278)
|..|+.++..|...+. ...+...+++....++...+...++.++..|-.-+ ...|.|-+-++|
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~e 311 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILE 311 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443 22233333444444444444444444444433333 444444444443
No 359
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=73.23 E-value=46 Score=30.73 Aligned_cols=9 Identities=33% Similarity=0.361 Sum_probs=5.3
Q ss_pred hHHHHHHHH
Q 023690 29 QLDVARKIT 37 (278)
Q Consensus 29 QLdlarkIt 37 (278)
|.+|+.|..
T Consensus 23 q~E~~~K~~ 31 (202)
T PF06818_consen 23 QAEVNQKDS 31 (202)
T ss_pred HHHHHHHHh
Confidence 566666654
No 360
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=73.20 E-value=40 Score=38.01 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=28.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
..+..|+.++..+++++-|+++.+.+-+++++.||....
T Consensus 741 ~~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~~ 779 (1174)
T KOG0933|consen 741 DDLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKMK 779 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777888888888888877777777777776665
No 361
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=73.12 E-value=34 Score=28.38 Aligned_cols=39 Identities=26% Similarity=0.337 Sum_probs=25.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
+.++..-...|+.+...++.+|..+...+..+++++...
T Consensus 31 ~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 31 SPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777777777666666555443
No 362
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=73.03 E-value=40 Score=37.79 Aligned_cols=76 Identities=17% Similarity=0.285 Sum_probs=50.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (278)
-+...+...|.++..||.++..+...+.+|++++......|. +......-|-+|+..|...+++.++-.+++|+++
T Consensus 626 ~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le----~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~ 701 (1072)
T KOG0979|consen 626 VLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELE----EEQKKLKLLKRERTKLNSELKSYQQRKERIENLV 701 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455667788888888888888888888888877776665 3334444455566666666666666666666653
No 363
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=72.94 E-value=52 Score=27.13 Aligned_cols=41 Identities=29% Similarity=0.361 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHh
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQR--------DVSKLEVFRKTLVQ 124 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~r--------DvaKLE~FKk~Lmq 124 (278)
-.++.-.+.+|++||..+..-.+-..| |-.-|+.|+-.|++
T Consensus 33 A~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~ 81 (94)
T PF04576_consen 33 ASEAMAMILRLQEEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDILYK 81 (94)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 347778899999999998877765544 55556666555544
No 364
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=72.89 E-value=17 Score=35.88 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 94 LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
..+....|..+.++|.+.+.+|+.-.+.|...|...
T Consensus 373 ~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 373 KKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445555555666666666655555555555444
No 365
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=72.66 E-value=51 Score=32.80 Aligned_cols=88 Identities=33% Similarity=0.439 Sum_probs=56.7
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---H---------HHH
Q 023690 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS-------RIAELQSQIESIYSSLS---D---------KLG 85 (278)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~-------~i~~Lq~r~s~le~~l~---~---------rL~ 85 (278)
||-+|-+|+ ++=|++||.|.-.+-.+|+--.. .|-.|..|+++|+.+|. . .|.
T Consensus 213 dp~~qaevq--------~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~ 284 (372)
T COG3524 213 DPKAQAEVQ--------MSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLS 284 (372)
T ss_pred ChhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchh
Confidence 677787776 45678899998888888874333 35788899998888876 1 333
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 86 QAQADKERLSKEN----EALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 86 ~a~ee~~kL~~E~----~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
.-..|-+.|.=|| ..|+..++.|. -||.|+.++++
T Consensus 285 ~qaAefq~l~lE~~fAekay~AAl~SlE--sArieAdrqq~ 323 (372)
T COG3524 285 NQAAEFQRLYLENTFAEKAYAAALTSLE--SARIEADRQQL 323 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Confidence 3333444444444 24555555553 36677776665
No 366
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=72.58 E-value=33 Score=33.98 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=38.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~ 99 (278)
|++|-..|-.++..|-++..+-.....+|++++.++..-+. .-|.+..+|++++.+|-.
T Consensus 264 I~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 264 IASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666777777666666667777777766665555 556666666666665543
No 367
>PRK10698 phage shock protein PspA; Provisional
Probab=72.49 E-value=77 Score=28.91 Aligned_cols=38 Identities=11% Similarity=0.223 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHH-------HHHHHHHHHhh
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSK-------LEVFRKTLVQS 125 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaK-------LE~FKk~LmqS 125 (278)
.+....|..+.+....++.+|..++.+ +++=|.+|+.-
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR 142 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLR 142 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555544 44445555543
No 368
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=72.49 E-value=41 Score=35.35 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ---RDVSKLEVFRKTL 122 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~---rDvaKLE~FKk~L 122 (278)
..|+.++..|+.++.+.+..|..|+..+..++.++. +...++..|.++......++.=|. ..|+||+.+-..-
T Consensus 331 ~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~----~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 331 EELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE----EKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444443333 555555555555554444433332 3456666554444
Q ss_pred Hh
Q 023690 123 VQ 124 (278)
Q Consensus 123 mq 124 (278)
++
T Consensus 407 ~~ 408 (594)
T PF05667_consen 407 EQ 408 (594)
T ss_pred HH
Confidence 33
No 369
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=72.43 E-value=29 Score=33.25 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 56 RSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 56 R~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|.++-|.+..++-|+.++..++..+.
T Consensus 160 ~~~~~e~d~rnq~l~~~i~~l~~~l~ 185 (264)
T PF07246_consen 160 KTQERENDRRNQILSHEISNLTNELS 185 (264)
T ss_pred HhhchhhhhHHHHHHHHHHHhhhhHH
Confidence 44444556666666666666666665
No 370
>PHA02557 22 prohead core protein; Provisional
Probab=72.38 E-value=38 Score=32.67 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKEN-EALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-----~rL~~a~ee~~kL~~E~-~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
..|...|.|..+.+.+|-++...|+..+. .-|..+.++....|+|+ .+|+.-|.--..=..||.+||..+-.+
T Consensus 144 ~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egvef~e~F~~kl~~i~E~v~~~ 222 (271)
T PHA02557 144 AEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLEFSETFSKKLTAIVEMVFKS 222 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHhc
Confidence 44455555555555554444444444443 22344444445555554 222222222112235677777766544
No 371
>PF14282 FlxA: FlxA-like protein
Probab=72.23 E-value=21 Score=29.05 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=30.6
Q ss_pred HHHHhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQ----LAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~----LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.|..++..|..++..|... -.+|...+..|+.++..|+.+|.
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777762 23678888888888888888776
No 372
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=72.15 E-value=16 Score=36.91 Aligned_cols=36 Identities=22% Similarity=0.342 Sum_probs=24.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|-+||.|+.-+...-....+ +..|+.....++..+.
T Consensus 324 i~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~ 359 (448)
T PF05761_consen 324 IPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLD 359 (448)
T ss_dssp -TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHH
T ss_pred ehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhc
Confidence 56899998888766543333 7777777777776654
No 373
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=72.14 E-value=62 Score=27.62 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAE-KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 47 ~LE~E~~~LR~~LaE-Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
.|+.++...+..-+. .+....-+...++.|..... ....+...|...+......+..+...+..|+..+..|
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~----~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl 74 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENK----RLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKL 74 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 374
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=72.09 E-value=9.6 Score=36.66 Aligned_cols=59 Identities=24% Similarity=0.393 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 023690 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKEN-EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~-~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (278)
...+|++|-..|+.++. +.+.+++++.+|- .+.+.+...|.+ +++.||.-|+.||||=-
T Consensus 5 ~L~eL~qrk~~Lq~eIe----~LerR~~ri~~EmrtsFaG~Sq~lA~---RVqGFkdYLvGsLQDLa 64 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIE----QLERRRERIEKEMRTSFAGQSQDLAI---RVQGFKDYLVGSLQDLA 64 (283)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccchHHHHH---HHhhhHHHHHHHHHHHH
Confidence 34567777766666664 5555666666663 345555555555 35789999999999753
No 375
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=72.08 E-value=42 Score=28.39 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=45.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSR--IAELQSQIESIYSSLSDKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~--i~~Lq~r~s~le~~l~~rL~~a~ee~-~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
-.=|-.|-.|+..+.+...+-++. ..++...+..|..+|. .+...+ .++..+++.....+..+.+-++-||
T Consensus 66 P~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le----~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELE----AAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 344556666666666666665544 6666666666666555 444444 5677777778888877777777665
No 376
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=71.98 E-value=67 Score=27.99 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=14.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 023690 50 SEHSALRSQLA-EKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 50 ~E~~~LR~~La-EKd~~i~~Lq~r~s~le~~l 80 (278)
+.+..||..+. -...+++.|+.....|..++
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~ei 89 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREI 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555665554 22233444444444444444
No 377
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=71.85 E-value=29 Score=30.19 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
++...+.++.+....+..|+.++...+.+|. .|+....++..|+++-..|....+
T Consensus 14 ~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~-~Lk~~~~d~eeLk~~i~~lq~~~~ 68 (155)
T PF06810_consen 14 DIEAPKAKVDKVKEERDNLKTQLKEADKQIK-DLKKSAKDNEELKKQIEELQAKNK 68 (155)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCHHHHHHHHHHHHHHHH
Confidence 3445666666666677777777777776663 444433444444444444444444
No 378
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=71.60 E-value=58 Score=27.10 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=11.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (278)
++...+.++..+|..|..-.....+.|++
T Consensus 18 ~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~ 46 (132)
T PF07926_consen 18 QEEDAEEQLQSLREDLESQAKIAQEAQQK 46 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444443333333333333
No 379
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=71.58 E-value=80 Score=32.21 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=30.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIY--------SSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le--------~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
+.+||.| ..||.-...|+..-.|-+.|...|. .+|-.| ...+.+...|.+|-.....++--|.-.|+
T Consensus 306 rQKle~e-~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK-aaLrkerd~L~keLeekkreleql~~q~~ 380 (442)
T PF06637_consen 306 RQKLEAE-QGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK-AALRKERDSLAKELEEKKRELEQLKMQLA 380 (442)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 3344445555555555555544442 222233 33344555555555554444444444443
No 380
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=71.51 E-value=29 Score=38.47 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=18.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
+|-+|+..||..|.|-.+....+-++.+.||
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 4446777788777776555544444444444
No 381
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=71.49 E-value=68 Score=33.74 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=28.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
.++..|+.|+..+-+++..=..+...+.++....-.++++||...+.+.+.+++....|...+..|.|
T Consensus 346 q~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~ 413 (656)
T PRK06975 346 RKVDRLDQELVQRQQANDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSR 413 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46667776666554443211111111111111111122244445555555555555555555554443
No 382
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=71.49 E-value=41 Score=25.37 Aligned_cols=67 Identities=19% Similarity=0.324 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKL-GQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL-~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
.+.+++..++.+.+....+..|+..+..+...+.... .....+......-...|...++.+...|..
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~ 70 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELER 70 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666666666666644443111 111133333334444444444444444443
No 383
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=71.38 E-value=28 Score=35.73 Aligned_cols=60 Identities=23% Similarity=0.321 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
-+.+|-..|..|-.++.-+..++..++ .|..++.+++.+|.-.-+.|....|.|...+.+
T Consensus 433 Yvdrl~~~L~qk~~~~~k~~~~~~~l~----~kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 433 YVDRLVESLQQKLKQEEKLRRKREDLE----EKRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 366666777777777776666666666 455589999999999999999999998877665
No 384
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=71.27 E-value=13 Score=34.09 Aligned_cols=49 Identities=29% Similarity=0.453 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHhhcccccC
Q 023690 82 DKLGQAQADKERLSKENEALTNTVR-KLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvK-kL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
.||+.++.++.+|--+...|..-|. +|+-.|.-+..| |.++|-||+||.
T Consensus 23 ~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~L-Ke~NqkLqedNq 72 (195)
T PF10226_consen 23 RRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGL-KEVNQKLQEDNQ 72 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 6888899999999999999888776 888888888888 678999999886
No 385
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=71.13 E-value=64 Score=37.02 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
.+..++.+|.+|...+.....+++-.+.|+..++|+|-..
T Consensus 512 ~l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~ 551 (1317)
T KOG0612|consen 512 KLEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEA 551 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 4444444444444444444455555556666666666554
No 386
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=71.01 E-value=45 Score=35.89 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 42 STRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 42 atRVs~LE~-E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
...+..+.. ++..|+.++.. +.++.+|...+..++..+. .+.. ...........+.+...+++|...+++++.+
T Consensus 472 ~~~~~~~~~~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~ 548 (908)
T COG0419 472 EKELLELYELELEELEEELSR-EKEEAELREEIEELEKELRELEEEL--IELLELEEALKEELEEKLEKLENLLEELEEL 548 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHH-Hhhcccc
Q 023690 119 RKTL-VQSLKDD 129 (278)
Q Consensus 119 Kk~L-mqSLq~d 129 (278)
+..| .+.|+.+
T Consensus 549 ~~~~~~~~l~~e 560 (908)
T COG0419 549 KEKLQLQQLKEE 560 (908)
T ss_pred HHHHHHHHHHHH
No 387
>PRK02119 hypothetical protein; Provisional
Probab=70.92 E-value=33 Score=26.45 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
+-++.|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|.
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie----~LN~~v~~Qq~~id~L~~ql~~L~ 50 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLE----ELNQALIEQQFVIDKMQVQLRYMA 50 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777776664 444444444555555554444443
No 388
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=70.90 E-value=1.1e+02 Score=30.03 Aligned_cols=80 Identities=23% Similarity=0.339 Sum_probs=46.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-LSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~k-L~~E~~~La~TvKkL~rDva 113 (278)
..++--|++.|++|---||++|.+--....--++-|..++..++ .+|..-.++..- |.+.|..|++-..-|.-.+-
T Consensus 216 qes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~ 295 (305)
T PF14915_consen 216 QESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLY 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 66788999999999999999998644443333344555555554 222222222222 33333445555555554444
Q ss_pred HHHH
Q 023690 114 KLEV 117 (278)
Q Consensus 114 KLE~ 117 (278)
+.|.
T Consensus 296 qyEk 299 (305)
T PF14915_consen 296 QYEK 299 (305)
T ss_pred HHHH
Confidence 4443
No 389
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=70.83 E-value=49 Score=30.41 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023690 60 AEKDSRIAELQSQIESIY 77 (278)
Q Consensus 60 aEKd~~i~~Lq~r~s~le 77 (278)
.+|++.|+.+++++..++
T Consensus 103 ~~kd~~i~~~~~~l~~~~ 120 (196)
T PF15272_consen 103 IEKDREIRTLQDELLSLE 120 (196)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 456666666665554333
No 390
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=70.79 E-value=64 Score=27.29 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 64 SRIAELQSQIESIYSSLSDKLGQAQADKE-RLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~-kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
..+.+++..-..++..++.++...+++-. -=+.|-+.|...|..|.|.|++||+
T Consensus 50 dl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 50 DLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555566666666554 1124558888889999999999986
No 391
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=70.66 E-value=15 Score=38.87 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=30.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|+.++-..|..||.++.+..+.|.+++.++.+|.++++.++.+++
T Consensus 18 t~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~ 62 (732)
T KOG0614|consen 18 TARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIA 62 (732)
T ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455666667777777777777777777777777666665555443
No 392
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=70.54 E-value=71 Score=35.95 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (278)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (278)
.|.++...++..|+ ....+...+.+|...+..+
T Consensus 480 ~l~~~~~~~k~~L~----~~~~el~~~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 480 LLKEEKEKLKSKLQ----NKNKELESLKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 55555555555444 4444444444444444444
No 393
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=70.45 E-value=15 Score=31.70 Aligned_cols=22 Identities=14% Similarity=0.182 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq 70 (278)
++++..+|..+...+..+..||
T Consensus 79 ~a~~~e~qsli~~yE~~~~kLe 100 (131)
T PF04859_consen 79 AAEIQEQQSLIKTYEIVVKKLE 100 (131)
T ss_pred ccchHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 394
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=70.40 E-value=73 Score=27.76 Aligned_cols=9 Identities=11% Similarity=0.217 Sum_probs=3.9
Q ss_pred HHHHHHHHh
Q 023690 116 EVFRKTLVQ 124 (278)
Q Consensus 116 E~FKk~Lmq 124 (278)
|..|-.+++
T Consensus 148 E~~K~~~lr 156 (177)
T PF07798_consen 148 ESLKWDTLR 156 (177)
T ss_pred HHHHHHHHH
Confidence 344444444
No 395
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=70.03 E-value=93 Score=30.14 Aligned_cols=86 Identities=21% Similarity=0.240 Sum_probs=58.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHHH-----------
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIES----IYSSLS----DKLGQAQADKERLSKENE----------- 99 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~----le~~l~----~rL~~a~ee~~kL~~E~~----------- 99 (278)
-.++.|...|..=...|..-|.+|++++.-|++=+.. +|+.|+ .-|..+-....+|.+--+
T Consensus 86 ~~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~LetIrwip~~~~~ 165 (277)
T PF15003_consen 86 DYLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHLETIRWIPNFDEN 165 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 3567777777777888888899999999888765542 455555 444445555555554433
Q ss_pred --HHHHHHHHHhhhHHHHHHHHHHHHh
Q 023690 100 --ALTNTVRKLQRDVSKLEVFRKTLVQ 124 (278)
Q Consensus 100 --~La~TvKkL~rDvaKLE~FKk~Lmq 124 (278)
.+...+.++.--|+++|.|=.++++
T Consensus 166 ~~~m~~aL~ki~~lvae~E~l~e~ilk 192 (277)
T PF15003_consen 166 PSNMDKALAKIDALVAECEELAEQILK 192 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777778888888777654
No 396
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=69.98 E-value=77 Score=33.82 Aligned_cols=65 Identities=23% Similarity=0.371 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhhHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT------NTVRKLQRDVSKLE 116 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La------~TvKkL~rDvaKLE 116 (278)
+..|+++|.+..+...+|...+..+...++.-++.....+..|..++..|. ..-|+|..+|..|+
T Consensus 243 i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~l~~~~~e~~~r~kL~N~i~eLk 313 (670)
T KOG0239|consen 243 IQALQQELEELKAELKELNDQVSLLTREVQEALKESNTLQSDLESLEENLVEKKKEKEERRKLHNEILELK 313 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444555555555555555555555555555333333333444444444444 22344444444443
No 397
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=69.77 E-value=75 Score=29.09 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (278)
.+....+||.+|.+|+..|...+..|+.--+..+.||+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467778888888888887777766655556666655
No 398
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=69.64 E-value=13 Score=40.63 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (278)
++.|+.+|..+|..-+..|..++++++
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~ 953 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 344455554444444444444444443
No 399
>PHA03332 membrane glycoprotein; Provisional
Probab=69.60 E-value=92 Score=35.55 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=36.1
Q ss_pred HhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~La----EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E 97 (278)
.||+.|..-+..|=..|+ +-|+.|.+-..||+.||.++-.|+.......++|+..
T Consensus 905 aAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 905 ARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556665555554443 5677778888888888888876666666666666555
No 400
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=69.58 E-value=27 Score=34.69 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 87 AQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
-.+|..||..++..|..-+-+++|-.++.+.
T Consensus 375 h~eEk~kle~~rr~Leee~~~f~~rk~~~~~ 405 (406)
T KOG3859|consen 375 HQEEKKKLEEKRKQLEEEVNAFQRRKTAAEL 405 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4578889999999999999999988887764
No 401
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=69.57 E-value=19 Score=37.68 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 023690 88 QADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~ 109 (278)
......|..||..|...++.|.
T Consensus 565 ~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 565 KSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 3555666666666666665554
No 402
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=69.24 E-value=24 Score=28.87 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
++.+..++.+.+.+|++.|.+.-..|.++|..|.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445556666666666666666666666666663
No 403
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=69.22 E-value=58 Score=35.12 Aligned_cols=76 Identities=22% Similarity=0.285 Sum_probs=49.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
++...+++|+.|...+.+.+..=-.++.++...+..|...+- ++|.++.+....+..|.+.+....+.|.-++.+|
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666655666666666666665555 6677777777777777777776666666554443
No 404
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=69.18 E-value=65 Score=26.67 Aligned_cols=37 Identities=30% Similarity=0.335 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
+-..-|.+..+.|...+++|+.+++++..--..+.+-
T Consensus 94 eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 94 EAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666666666666666655544444433
No 405
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=69.18 E-value=52 Score=32.96 Aligned_cols=46 Identities=13% Similarity=0.168 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (278)
Q Consensus 59 LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (278)
+..=++.|..|++|+..+|..|..+....+.-..+|+...+.|.++
T Consensus 415 i~~l~~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 415 LKKLTKQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444444444455555565555555554
No 406
>PF14992 TMCO5: TMCO5 family
Probab=69.12 E-value=19 Score=34.74 Aligned_cols=34 Identities=21% Similarity=0.368 Sum_probs=16.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
.+.+|-..-..|=+++.+|+..|..|+..++..+
T Consensus 12 d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Eit~~~ 45 (280)
T PF14992_consen 12 DEQRLDEANQSLLQKIQEKEGAIQSLEREITKMD 45 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444444444555555555555555555444444
No 407
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.05 E-value=1.1e+02 Score=29.25 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHH
Q 023690 27 FEQLDVARKITSIAISTRVSDLESE 51 (278)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E 51 (278)
|+++.=|..|..-....++..+.+|
T Consensus 47 y~~~~~~i~~le~~~~~~l~~ak~e 71 (258)
T PF15397_consen 47 YDIYRTAIDILEYSNHKQLQQAKAE 71 (258)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHH
Confidence 3344444444444444444444333
No 408
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=68.92 E-value=50 Score=25.32 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (278)
...++...|..+.+.|....+.|...+ +.+|..|..
T Consensus 66 ~L~~~~~~~~~~i~~l~~~~~~l~~~l---~~~~~~l~~ 101 (106)
T PF01920_consen 66 ELEERIEKLEKEIKKLEKQLKYLEKKL---KELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 333444444444444444444444333 334444443
No 409
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=68.86 E-value=35 Score=31.95 Aligned_cols=69 Identities=28% Similarity=0.313 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
+..|-..|.++.+++.+|..+-..|+..+. +|++...++..-...++.-|..-.+...++|+ |+++++.
T Consensus 120 ~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~~~~~~~vl~~l~~n~~~~v~--E~~r~~~ 191 (217)
T COG1777 120 ISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDGDMTERIVLEYLLKNGAADVE--ETSRRTV 191 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhHHH--HHHhccc
Confidence 455566677777777777777777777666 78888888887777777777777777777776 4454443
No 410
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=68.84 E-value=65 Score=26.58 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=13.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHH
Q 023690 36 ITSIAISTRVSDLESEHSALRSQL 59 (278)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~L 59 (278)
.+..-|..++.+||.++..+..++
T Consensus 8 ~~~~~L~~~~~~le~~i~~~~~~~ 31 (171)
T PF03357_consen 8 KTIRRLEKQIKRLEKKIKKLEKKA 31 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666665555444
No 411
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=68.77 E-value=71 Score=27.15 Aligned_cols=77 Identities=26% Similarity=0.333 Sum_probs=41.4
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQL-AE--KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (278)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L-aE--Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La 102 (278)
+-++++=..+-.+..|..+...+|.-|..|=..- .| =.+.|.+|++... .+.++..+..+|++.|-
T Consensus 63 ~~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~-----------~~~~el~~~v~e~e~ll 131 (144)
T PF11221_consen 63 PPEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENE-----------EAEEELQEAVKEAEELL 131 (144)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHH
Confidence 5566666666667777777777777666664411 12 2234444444433 44444445555555555
Q ss_pred HHHHHHhhhHH
Q 023690 103 NTVRKLQRDVS 113 (278)
Q Consensus 103 ~TvKkL~rDva 113 (278)
..|..+-++|+
T Consensus 132 ~~v~~~i~~ia 142 (144)
T PF11221_consen 132 KQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHTT-
T ss_pred HHHHHHHHHHh
Confidence 56665555554
No 412
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=68.76 E-value=53 Score=31.77 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
|..|+.+|.|.++.+++|++.+
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~ 135 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREY 135 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555444444
No 413
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=68.69 E-value=33 Score=28.73 Aligned_cols=44 Identities=25% Similarity=0.377 Sum_probs=25.7
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 72 QIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 72 r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
++..||.++. ..|....+....|.+||..|.---..|.+-|+++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444443 3444666666777777777766666666666655
No 414
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=68.66 E-value=95 Score=33.20 Aligned_cols=71 Identities=32% Similarity=0.411 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV---SKLEVFRKT 121 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv---aKLE~FKk~ 121 (278)
++..+-..|.-||.+|..|-.-|..++.+++.-+...-..+.+|.++...+...+.+|.+.+ +--|..|+-
T Consensus 279 ~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~E 352 (629)
T KOG0963|consen 279 DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKE 352 (629)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 36777888899999999999999999999982222222233444444444444433333322 334555554
No 415
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=68.40 E-value=80 Score=27.57 Aligned_cols=71 Identities=20% Similarity=0.289 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTN--------TVRKLQRDVSKLEV 117 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~--------TvKkL~rDvaKLE~ 117 (278)
-..+++.||.+|..=-..|..-+.|++ ||..+. +.|++...|.+.-.+|-+++.+ .+||+-+. .|+
T Consensus 50 ~~~d~~~lr~~L~~YLD~IKm~RAkY~-lENky~L~~tL~~LtkEVn~Wr~ewd~iE~~mFGD~pnSmkkMl~n---ves 125 (132)
T PF09432_consen 50 PSTDTEELRAQLDRYLDDIKMERAKYS-LENKYSLQDTLNQLTKEVNYWRKEWDNIEMLMFGDGPNSMKKMLQN---VES 125 (132)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHH---HHH
Confidence 345788999999988888888777775 666665 8999999999999999999875 46776554 455
Q ss_pred HHHHH
Q 023690 118 FRKTL 122 (278)
Q Consensus 118 FKk~L 122 (278)
+|..|
T Consensus 126 lk~~l 130 (132)
T PF09432_consen 126 LKSKL 130 (132)
T ss_pred HHHHh
Confidence 55554
No 416
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=68.36 E-value=87 Score=35.45 Aligned_cols=93 Identities=17% Similarity=0.221 Sum_probs=0.0
Q ss_pred CCCchhhHHHHHHHH----HHHHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 023690 23 PSDPFEQLDVARKIT----SIAISTRVSDLESE-------HSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQAD 90 (278)
Q Consensus 23 P~DP~EQLdlarkIt----s~A~atRVs~LE~E-------~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-~rL~~a~ee 90 (278)
+..+.+.|.=+++.. ..++..++..||.| .+-+|.+......++..++.++..|+.++. -|+.++++.
T Consensus 163 ~~~~~~~l~~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~ 242 (1109)
T PRK10929 163 LGTPNTPLAQAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERA 242 (1109)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH-----------------HHHHHHHHHHHhhhHHHH
Q 023690 91 KERLSKE-----------------NEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 91 ~~kL~~E-----------------~~~La~TvKkL~rDvaKL 115 (278)
.++.+.. |..|+..+..++..+..|
T Consensus 243 ~~~~~~~~~~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l 284 (1109)
T PRK10929 243 LESTELLAEQSGDLPKSIVAQFKINRELSQALNQQAQRMDLI 284 (1109)
T ss_pred HHHHHHhHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
No 417
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=68.35 E-value=4.5 Score=35.61 Aligned_cols=81 Identities=19% Similarity=0.240 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|.++..=+-+++...+..|+.+-.+|+.++.-=.+.+.-|+.++..-...|+ .+.++..+|-+|++.|...+-++.
T Consensus 2 L~~~~aq~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq----~se~~~~~Lpee~~~Lqfl~~~~r 77 (181)
T PF09311_consen 2 LGLGEAQVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQ----ESEQEVAQLPEEVKHLQFLVSIKR 77 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHT----------------------------------------------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhcCcchHHHHHHHHHhcc
Confidence 3445555677888888888888888888777666666666666665554444 777777777777777776666655
Q ss_pred hhHHH
Q 023690 110 RDVSK 114 (278)
Q Consensus 110 rDvaK 114 (278)
-|+..
T Consensus 78 ~d~~~ 82 (181)
T PF09311_consen 78 EDLIE 82 (181)
T ss_dssp -----
T ss_pred ccccc
Confidence 55433
No 418
>PHA03161 hypothetical protein; Provisional
Probab=68.23 E-value=45 Score=29.61 Aligned_cols=9 Identities=44% Similarity=0.475 Sum_probs=4.7
Q ss_pred hHHHHHHHH
Q 023690 29 QLDVARKIT 37 (278)
Q Consensus 29 QLdlarkIt 37 (278)
||+.+++..
T Consensus 39 Qf~~t~~~l 47 (150)
T PHA03161 39 QLDHTKKSL 47 (150)
T ss_pred HHHHHHHHH
Confidence 555555443
No 419
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=68.19 E-value=71 Score=33.70 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=49.9
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHH----------HHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 023690 36 ITSIAISTRVSDLESEHSALRSQLA----------EKDSRIA-ELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~La----------EKd~~i~-~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~L 101 (278)
----|+--|+-.||.|+..||.+.. +|.+..+ ++.+++-.+..+.+ .-|....++++.+++|+..|
T Consensus 159 ~~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skL 238 (596)
T KOG4360|consen 159 ELLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKL 238 (596)
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456888899999999999998752 4444444 55555544444443 33456677777777777777
Q ss_pred HHHHHHHhhhH
Q 023690 102 TNTVRKLQRDV 112 (278)
Q Consensus 102 a~TvKkL~rDv 112 (278)
.+.+-.|.+.+
T Consensus 239 lsql~d~qkk~ 249 (596)
T KOG4360|consen 239 LSQLVDLQKKI 249 (596)
T ss_pred HHHHHhhHHHH
Confidence 77765554443
No 420
>PRK10807 paraquat-inducible protein B; Provisional
Probab=68.19 E-value=1.2e+02 Score=31.39 Aligned_cols=103 Identities=15% Similarity=0.300 Sum_probs=50.3
Q ss_pred hcCCCCchhhHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 023690 20 QVLPSDPFEQLDVARKITSIAISTRVSDL--ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------DKLGQAQA 89 (278)
Q Consensus 20 ~vLP~DP~EQLdlarkIts~A~atRVs~L--E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--------~rL~~a~e 89 (278)
-+||+.|=.==+|..+|. ++..|+.+| |.=+..|..-|.+=++.+.+|+..+..++..+. ..|..+++
T Consensus 406 pvIPt~ps~l~~l~~~~~--~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~ 483 (547)
T PRK10807 406 PIIPTVSGGLAQIQQKLM--EALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLR 483 (547)
T ss_pred ceeecCCCCHHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 578877653222233332 233333333 333445555555555566666555544442222 33445555
Q ss_pred HHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 90 DKERLSKE-------NEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 90 e~~kL~~E-------~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
+.+++.++ ...|.+|++.|+|=+..| |.|+..|++
T Consensus 484 ~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r~l----r~l~~~L~~ 525 (547)
T PRK10807 484 ELNRSMQGFQPGSPAYNKMVADMQRLDQVLREL----QPVLKTLNE 525 (547)
T ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHHHHh
Confidence 55544444 344556666666666555 444555543
No 421
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=68.02 E-value=48 Score=34.19 Aligned_cols=74 Identities=15% Similarity=0.232 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
|-+||+-.--.+..++++++.+||+.+..=.+.+.+|.+=+..+-.+++ +.|+. =|+.|.-.+.+|.+++
T Consensus 105 aaqitA~vAl~~a~~na~~I~~lk~si~~tN~AV~~l~~g~~~~~~av~-----~lQd~-----IN~~i~Pain~l~C~v 174 (490)
T PF00523_consen 105 AAQITAAVALHQAQQNAANILRLKESIQSTNEAVQELTNGLSQLAVAVQ-----ALQDF-----INNEIIPAINQLSCEV 174 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHHHHHHH
T ss_pred hhhhhhhhhhHhhHHhHHHHHHHhhhhhcccccceecchHHHHHHHHHH-----HHHHH-----HHHHhhhhhhhcchhh
Confidence 5678877777889999999999999999999999999999888888775 22222 2567788888888888
Q ss_pred HHHH
Q 023690 113 SKLE 116 (278)
Q Consensus 113 aKLE 116 (278)
..++
T Consensus 175 ~~~~ 178 (490)
T PF00523_consen 175 ADNQ 178 (490)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 422
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=67.82 E-value=54 Score=33.95 Aligned_cols=64 Identities=13% Similarity=0.205 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQA--QADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-~rL~~a--~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
..++.++.+-++.|..|++++..||.+|. .-+-.. ..+..+|.+|.+.+...+..|...-..|+
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~ 625 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ 625 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666667777766666664 101000 11345555555555555555555555544
No 423
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.73 E-value=1.4e+02 Score=33.82 Aligned_cols=88 Identities=24% Similarity=0.352 Sum_probs=55.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQAD-KERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee-~~kL~~E~~~La~TvKkL~ 109 (278)
+.-.|..=|.||..||..+-=|.+.+.+++=|..-+|..|. +++.++.++ ...|.+.-..+..|+..|+
T Consensus 953 L~~tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq 1032 (1243)
T KOG0971|consen 953 LGLTLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQ 1032 (1243)
T ss_pred hhhhHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555555555555555554 233333222 3445555667889999999
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 023690 110 RDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 110 rDvaKLE~FKk~LmqSLq~ 128 (278)
+|+..||.=|-.|-|.|+-
T Consensus 1033 ~di~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1033 ADIDQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHHHHhhHHHHHHHhhh
Confidence 9999999999999888754
No 424
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=67.67 E-value=39 Score=31.09 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 63 d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
.....+|+.++..|+.+|.++...+..++.+|.++...+.-+.+.|.
T Consensus 81 ~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~ 127 (196)
T PF15272_consen 81 SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ 127 (196)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788999999999988888899999999999999999988888
No 425
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=67.59 E-value=60 Score=31.61 Aligned_cols=65 Identities=15% Similarity=0.376 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.|..++..++.+-.++.+...+|.+++..+-.... ..+++..+|-.+++.+-..+-.|..++.+|
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rd----eineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREERD----EINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 426
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=67.50 E-value=32 Score=25.53 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (278)
++.|+.+|..++..=...|..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 567777777777666666666665554
No 427
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=67.24 E-value=1.5e+02 Score=30.10 Aligned_cols=26 Identities=19% Similarity=0.325 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.++.+||+.-...+..|+..|.-||.
T Consensus 367 ~~v~~Er~~~~~~l~~~~~~~~~le~ 392 (582)
T PF09731_consen 367 EKVEQERNGRLAKLAELNSRLKALEE 392 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777766666666666666553
No 428
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=67.21 E-value=48 Score=32.93 Aligned_cols=62 Identities=19% Similarity=0.343 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
+..|+.+.+.+-.++. +++...++..+|.+|-..|.+.++.|...+..+|.=-..++..|-+
T Consensus 44 ~~~lr~~rn~~sk~i~-~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iPN 105 (425)
T PRK05431 44 LEELQAERNALSKEIG-QAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRIPN 105 (425)
T ss_pred HHHHHHHHHHHHHHHH-HHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444444444444442 2122222344566677777777777777777777666667776654
No 429
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=67.17 E-value=1.5e+02 Score=33.38 Aligned_cols=37 Identities=14% Similarity=0.307 Sum_probs=14.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
..|+..++..+..+.....+-+..+..+++++..+..
T Consensus 606 ~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~ 642 (1201)
T PF12128_consen 606 RERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKR 642 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444433333333333333333333333
No 430
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=66.97 E-value=80 Score=32.15 Aligned_cols=83 Identities=20% Similarity=0.343 Sum_probs=54.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
..++-.|+.+.++|... ..+|+.+.+.+-.++...++.-.++...|..|...|...++.|...+..++.=-.+
T Consensus 28 ~~~~~~ld~~~r~~~~~-------~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 28 VDKLLELDEERRKLLRE-------LEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444444444444443 44555555555555532233333356789999999999999999999998888888
Q ss_pred HHhhcccccC
Q 023690 122 LVQSLKDDED 131 (278)
Q Consensus 122 LmqSLq~d~~ 131 (278)
+|.+|.+-..
T Consensus 101 ~ll~ipNi~~ 110 (429)
T COG0172 101 LLLTIPNIPH 110 (429)
T ss_pred HHHhCCCCCc
Confidence 8988876544
No 431
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=66.62 E-value=47 Score=35.60 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|--|+-+-|..+|.+|-.|-.-||..|.-..+.-..||+|+..||.+|.
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk 367 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELK 367 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788899999999999999999998888888889999999999997
No 432
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=66.32 E-value=1.1e+02 Score=32.24 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
..+=.+||..|.+++|.--+||.+.=+| ||+|.-
T Consensus 218 ~VnP~k~KeQLV~QLkTQItDLErFInF-------lQ~e~~ 251 (621)
T KOG3759|consen 218 LVNPFKEKEQLVDQLKTQITDLERFINF-------LQDEVG 251 (621)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhh
Confidence 3444688999999999988888777776 566644
No 433
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=66.31 E-value=1.1e+02 Score=28.23 Aligned_cols=18 Identities=33% Similarity=0.632 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 023690 94 LSKENEALTNTVRKLQRD 111 (278)
Q Consensus 94 L~~E~~~La~TvKkL~rD 111 (278)
|.+++..|.++.+-|.+.
T Consensus 79 lEE~~~~L~aq~rqlEkE 96 (193)
T PF14662_consen 79 LEEENRSLLAQARQLEKE 96 (193)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 434
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=66.29 E-value=58 Score=25.07 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVR-KLQRDVSKLE 116 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvK-kL~rDvaKLE 116 (278)
..+....++..+|.+||-.|+.++- .+.+.+.+|+
T Consensus 64 ~~I~~~~~~~~~l~deKv~lA~~~~d~v~~hi~rLD 99 (105)
T PF12998_consen 64 KEIQEEYERALELSDEKVALAQQAYDLVDRHIRRLD 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667777888888888877653 3344444443
No 435
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=66.20 E-value=54 Score=36.87 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
.-++.+..|.++++.|...+-.-+++++-
T Consensus 473 ~~~~~~~~l~~~~~~~k~~L~~~~~el~~ 501 (1041)
T KOG0243|consen 473 NQLEIKELLKEEKEKLKSKLQNKNKELES 501 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445666655555554444444443
No 436
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=66.13 E-value=94 Score=31.31 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq 70 (278)
.+-+++..+|.+..+-..++..|+
T Consensus 84 ~~~~q~~~~~~~~~~v~~ek~rl~ 107 (377)
T KOG2896|consen 84 CLSAQVQSMRVEMKEVSEEKLRLQ 107 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554444444444
No 437
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=66.03 E-value=8.5 Score=32.81 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (278)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (278)
.+++.++.- +...+..|+.++..|...|.+||..|..|.++++
T Consensus 128 ~~~~~L~~P-ll~~~~~l~~~~~~L~~~l~~KD~~i~~l~~~~~ 170 (171)
T PF09302_consen 128 QFLSHLNSP-LLRMSSALQRQVESLKDLLKEKDKEIEKLRDKLE 170 (171)
T ss_dssp HHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 555555543 3445678888999999999999999999987653
No 438
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=66.00 E-value=61 Score=36.65 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 30 LDVARKITSIAIST---RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 30 LdlarkIts~A~at---RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|+.-+++....+-. |+..||+.+..|+.++.+.+..+..|..+++++++.+.
T Consensus 386 ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~ 440 (1141)
T KOG0018|consen 386 LNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYE 440 (1141)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777654 78899999999999999999999999999999888876
No 439
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=65.96 E-value=88 Score=32.45 Aligned_cols=40 Identities=30% Similarity=0.376 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
++.|--++|..|-..|. .+|-+-+.|||.=||-|..-|-+
T Consensus 187 e~V~lentlEQEqEalv---N~LwKrmdkLe~ekr~Lq~KlDq 226 (552)
T KOG2129|consen 187 EAVQLENTLEQEQEALV---NSLWKRMDKLEQEKRYLQKKLDQ 226 (552)
T ss_pred HHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455566777777665 46777889999999999998833
No 440
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=65.81 E-value=40 Score=29.54 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=44.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE 99 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~ 99 (278)
|--+|....+-|++|..-+..|..|+.|+...+..|.+|-.+..+-..++.++..
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae~ 57 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAEI 57 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 4456777788899999999999999999999999998777777777777766443
No 441
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=65.74 E-value=1.3e+02 Score=28.90 Aligned_cols=71 Identities=23% Similarity=0.289 Sum_probs=47.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHhh
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQAD-KERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee-~~kL~~E~~~La~TvKkL~r 110 (278)
+|..|...|+.|..++-.++..-+.....|+.....+..++. ..++..++. |-.|+++|..|.+-.+++.+
T Consensus 26 ~L~kk~~ell~e~k~~~k~~~~~~Kk~~~l~kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE~~~~~~ 99 (309)
T PF09728_consen 26 ALCKKYAELLEEMKRLQKQLKKLQKKQEQLQKEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEESKRRAR 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888889999999888888888888888888888877776 222222222 35556666666655554433
No 442
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=65.73 E-value=65 Score=31.48 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|..|...|+.|-+.....|+.|+.|-.++.
T Consensus 215 ia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 215 IASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666665554
No 443
>PRK00736 hypothetical protein; Provisional
Probab=65.71 E-value=32 Score=26.17 Aligned_cols=39 Identities=13% Similarity=0.229 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 69 LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 69 Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
+++|+..||..+ ..-.+-+..|.+.--.....+-+|.+.
T Consensus 3 ~e~Ri~~LE~kl----afqe~tie~Ln~~v~~Qq~~i~~L~~q 41 (68)
T PRK00736 3 AEERLTELEIRV----AEQEKTIEELSDQLAEQWKTVEQMRKK 41 (68)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555322 244444444444443333344444433
No 444
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=65.55 E-value=1.2e+02 Score=31.46 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 023690 67 AELQSQIESIYSSLS 81 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~ 81 (278)
++|==|+...|.+..
T Consensus 430 gEllvrl~eaeea~~ 444 (488)
T PF06548_consen 430 GELLVRLREAEEAAS 444 (488)
T ss_pred HHHHHHHHhHHHHHH
Confidence 344444444444443
No 445
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=65.45 E-value=1.2e+02 Score=31.73 Aligned_cols=79 Identities=14% Similarity=0.299 Sum_probs=41.4
Q ss_pred HHHHHHhhhhh--HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDL--ESEHSALRSQLAEKDS-------RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 38 s~A~atRVs~L--E~E~~~LR~~LaEKd~-------~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
...|.+|...| +.++..+++++.+=.. .|....+++..|-.+.++....+..-.+.|+.++..+.+.++.|
T Consensus 177 ~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~l 256 (555)
T TIGR03545 177 QQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAEL 256 (555)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46777888888 5667777777763222 22233333333334444333334444455555555555555555
Q ss_pred h----hhHHHHH
Q 023690 109 Q----RDVSKLE 116 (278)
Q Consensus 109 ~----rDvaKLE 116 (278)
. .|+++|+
T Consensus 257 k~ap~~D~~~L~ 268 (555)
T TIGR03545 257 KKAPQNDLKRLE 268 (555)
T ss_pred HhccHhHHHHHH
Confidence 3 3555554
No 446
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=65.39 E-value=60 Score=24.93 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
++....+...+|....+.|..++.-.
T Consensus 73 ~~~~l~~q~~~l~~~l~~l~~~~~~~ 98 (127)
T smart00502 73 KLKVLEQQLESLTQKQEKLSHAINFT 98 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 447
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=65.14 E-value=1.2e+02 Score=28.19 Aligned_cols=27 Identities=30% Similarity=0.516 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 55 LRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
++.++.+-+..+..|+.++..++..+.
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~ 159 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEID 159 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555554
No 448
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=65.12 E-value=31 Score=27.58 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
....++.|.-+....+...+|.|.+..--+|+
T Consensus 5 Ki~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 5 KIRAEIEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444544444444443
No 449
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=65.09 E-value=1.6e+02 Score=29.69 Aligned_cols=89 Identities=22% Similarity=0.221 Sum_probs=48.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHH-H
Q 023690 39 IAISTRVSDLESEHSALRSQLA-----------EKDSRIAELQSQIESIYSSLS---DKLGQAQ----ADKERLSKEN-E 99 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~La-----------EKd~~i~~Lq~r~s~le~~l~---~rL~~a~----ee~~kL~~E~-~ 99 (278)
..+......||.++.+|+.++. |-.-.+.-|+++++.+..-.+ ..|++-+ ++.+=+..|| .
T Consensus 222 ~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaR 301 (395)
T PF10267_consen 222 REIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERAR 301 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566777888888888887544 222333344444444443333 3333332 1222233333 3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 100 ~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
.+...+...+--|+||| +.++.|-.|-+
T Consensus 302 di~E~~Es~qtRisklE--~~~~Qq~~q~e 329 (395)
T PF10267_consen 302 DIWEVMESCQTRISKLE--QQQQQQVVQLE 329 (395)
T ss_pred HHHHHHHHHHHHHHHHH--HHHhhhhhhhc
Confidence 45556677777788888 56666665544
No 450
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=65.05 E-value=75 Score=28.50 Aligned_cols=11 Identities=18% Similarity=0.202 Sum_probs=4.1
Q ss_pred HHHHHHHHHHh
Q 023690 99 EALTNTVRKLQ 109 (278)
Q Consensus 99 ~~La~TvKkL~ 109 (278)
+.+.+.++.+.
T Consensus 112 ~~~~~~l~~~~ 122 (322)
T TIGR01730 112 EAAQADLEAAK 122 (322)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 451
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=65.00 E-value=1.1e+02 Score=27.83 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=21.2
Q ss_pred HHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSAL-RSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 41 ~atRVs~LE~E~~~L-R~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|..|+..++.++..- +++-..-+..++.|++.+..|+..|.
T Consensus 10 i~e~~~~f~~~le~e~~~Rr~~ee~r~~~i~e~i~~Le~~l~ 51 (247)
T PF06705_consen 10 INERFSGFESDLENEKRQRREQEEQRFQDIKEQIQKLEKALE 51 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 445555555554322 33333444555666666666666665
No 452
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=64.83 E-value=64 Score=25.04 Aligned_cols=13 Identities=8% Similarity=0.371 Sum_probs=4.9
Q ss_pred hhhhhHHHHHHHH
Q 023690 44 RVSDLESEHSALR 56 (278)
Q Consensus 44 RVs~LE~E~~~LR 56 (278)
.|..+..+|..++
T Consensus 9 ~v~~I~~~I~~i~ 21 (117)
T smart00503 9 KVEEIRANIQKIS 21 (117)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 453
>PRK00295 hypothetical protein; Provisional
Probab=64.80 E-value=36 Score=25.89 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq 70 (278)
+..|=.+++--+..|.+|.
T Consensus 7 i~~LE~kla~qE~tie~Ln 25 (68)
T PRK00295 7 VTELESRQAFQDDTIQALN 25 (68)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 454
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.65 E-value=94 Score=31.74 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.|..+..|+...+..|......+..|+.-+..|..+|.
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555554444
No 455
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=64.47 E-value=97 Score=33.54 Aligned_cols=64 Identities=28% Similarity=0.341 Sum_probs=32.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 44 RVSDLESEHSALRSQLAEKDSR-----------IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~-----------i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
-|..|-.|+..||.++.+-... +.+|.+++..++.... ...+....|.+|...+...+..-+..
T Consensus 367 Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~r----e~qeri~~LE~ELr~l~~~A~E~q~~ 441 (717)
T PF09730_consen 367 EVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSR----EDQERISELEKELRALSKLAGESQGS 441 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3445555666665555433332 3444444444444332 33446666777776666666664433
No 456
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=64.42 E-value=1.2e+02 Score=28.18 Aligned_cols=97 Identities=25% Similarity=0.322 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH---HHHH-------HHHHHHHH
Q 023690 31 DVARKITSIAISTRVSDLESEHSALRSQLAEK-------DSRIAELQSQIESIYSSLS---DKLG-------QAQADKER 93 (278)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~~LaEK-------d~~i~~Lq~r~s~le~~l~---~rL~-------~a~ee~~k 93 (278)
+.++|+.. .|..++|..+..+..+|.|- |+...+.-.++.=+|..|- .|.. +..++...
T Consensus 45 er~~Kv~e----nr~~kdEE~~e~~e~qLkEAk~iaE~adrK~eEVarkL~iiE~dLE~~eeraE~~Es~~~eLeEe~~~ 120 (205)
T KOG1003|consen 45 ERGMKVIE----NRAQKLEEKMEAQEAQLKEAKHIAEKADRKYEEVARKLVIIEGELERAEERAEAAESQSEELEEDLRI 120 (205)
T ss_pred HHHHHHHH----HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565553 34455555555555555443 4344444444444444444 3444 44444444
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 94 LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 94 L~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
+...+.+|..-.-++..++.+.|.-=|.|.--|.+-+-
T Consensus 121 ~~~nlk~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~ 158 (205)
T KOG1003|consen 121 LDSNLKSLSAKEEKLEQKEEKYEEELKELTDKLKEAET 158 (205)
T ss_pred hHhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhh
Confidence 55555555555555666666666666777776665543
No 457
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=64.39 E-value=1.1e+02 Score=27.46 Aligned_cols=86 Identities=22% Similarity=0.328 Sum_probs=49.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH------HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DK------LGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--~r------L~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
..+..|+...+.-+..|-.+...=...|..+.+--..++ .|. ++ +..-..++..|+.||..|-.+++.-..
T Consensus 13 k~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~-~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~leEhq~ 91 (181)
T PF05769_consen 13 KRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQ-ELNELSKNRPRAGLQQENRQIRQLQQENRELRQSLEEHQS 91 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666555544444444431111111 111 11 334445568999999999999998888
Q ss_pred hHHH-HHHHHHHHHhh
Q 023690 111 DVSK-LEVFRKTLVQS 125 (278)
Q Consensus 111 DvaK-LE~FKk~LmqS 125 (278)
-|.. +..|+++..+=
T Consensus 92 alelIM~KyReq~~~l 107 (181)
T PF05769_consen 92 ALELIMSKYREQMSQL 107 (181)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7765 45566554433
No 458
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=64.35 E-value=66 Score=25.03 Aligned_cols=70 Identities=11% Similarity=0.178 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
+-.+|..|..|+..=-.=-=.|+-|++++..+--.-. ....+..-++..|.+|...+...++.+.+++++
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~a~~~~e~ 75 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKEAEKAIEE 75 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 459
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=64.07 E-value=88 Score=26.33 Aligned_cols=62 Identities=24% Similarity=0.366 Sum_probs=32.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
.++++|-.||+.+-.|-.....+...+.++. .++..+.++..+|..|--.|-..+..+..+.
T Consensus 32 ELk~~vL~lE~rvleLel~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~e~~~l~~~~~a~~k~~ 93 (108)
T PF14739_consen 32 ELKNEVLRLENRVLELELHGDKAAPQIADLR-----------HRLAEAQEDRQELQEEYVSLKKNYQALPKAF 93 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444444444444444443333333333333 5566666777777777666665555555443
No 460
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.83 E-value=81 Score=28.79 Aligned_cols=80 Identities=10% Similarity=0.177 Sum_probs=48.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQS---QIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~---r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (278)
+|..+|.++..|+..|..=-..+..+-+ .+.... ..+...+.+-.+....-+..+.++++...-|..|++++.
T Consensus 3 ~i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~----~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~ 78 (200)
T cd07638 3 ALEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQAN----KQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHT 78 (200)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888887654444433322 222222 233344445544545555667777888877888887777
Q ss_pred HHHhhcc
Q 023690 121 TLVQSLK 127 (278)
Q Consensus 121 ~LmqSLq 127 (278)
.|+.-.+
T Consensus 79 ~L~~q~~ 85 (200)
T cd07638 79 ILFDQAQ 85 (200)
T ss_pred HHHHHHH
Confidence 7766544
No 461
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=63.83 E-value=31 Score=32.29 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=34.3
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 023690 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQL---AEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~L---aEKd~~i~~Lq~r~s~le~~l~ 81 (278)
-..||+|||+. --+.=|+.+|.+.-..+...--.+ .+++..+.++.+.+..||.+|.
T Consensus 87 ~~iLP~DPy~R------a~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~ 146 (231)
T KOG0406|consen 87 PPILPSDPYER------AQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELG 146 (231)
T ss_pred CCCCCCCHHHH------HHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 35799999985 223334455544334333333332 4666677777777778887775
No 462
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=63.49 E-value=47 Score=33.66 Aligned_cols=67 Identities=21% Similarity=0.302 Sum_probs=39.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH----------HHH---H-----HHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEK----------DSR---I-----AELQSQIESIYSSLS-------DKLGQAQADKERL 94 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEK----------d~~---i-----~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL 94 (278)
+++.++..++.|+..||.+|.+- ... + ..|++|+..||.+|. .+-...+...-++
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~~~~~~~~~~~~~fl~rtl~~ 192 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALKREDGNAITAVVEFLKRTLKK 192 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence 45677788888888888888775 222 2 566777777777666 1112222334444
Q ss_pred HHHHHHHHHHHH
Q 023690 95 SKENEALTNTVR 106 (278)
Q Consensus 95 ~~E~~~La~TvK 106 (278)
..++..|....+
T Consensus 193 e~~~~~L~~~~~ 204 (511)
T PF09787_consen 193 EIERQELEERPK 204 (511)
T ss_pred HHHHHHHHHHHH
Confidence 445555555444
No 463
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=63.42 E-value=1.2e+02 Score=27.77 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=41.7
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+.-.+.++.+....++..-+........++.+.+.+++..+..+++....|+..+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r 195 (247)
T PF14661_consen 140 SALRLAEAFRLKPQDLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYR 195 (247)
T ss_pred hhhhhhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467777777777777777777777888888999999998888877766665554
No 464
>PF15456 Uds1: Up-regulated During Septation
Probab=63.32 E-value=93 Score=26.39 Aligned_cols=30 Identities=27% Similarity=0.424 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|+..|+.++.-=+..|..++.++. ||.-+.
T Consensus 23 EVe~LKkEl~~L~~R~~~lr~kl~-le~k~R 52 (124)
T PF15456_consen 23 EVEELKKELRSLDSRLEYLRRKLA-LESKIR 52 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 566666666666666666666655 554443
No 465
>PLN02678 seryl-tRNA synthetase
Probab=63.28 E-value=96 Score=31.50 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
.++..+|.+|-..|...++.|..++..||.=-..+|..|-+-
T Consensus 70 ~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPNi 111 (448)
T PLN02678 70 KEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGNL 111 (448)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 355566777777777888888888877777777777777543
No 466
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=63.23 E-value=96 Score=26.50 Aligned_cols=35 Identities=23% Similarity=0.426 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH----HHHHHHHHHhhcc
Q 023690 93 RLSKENEALTNTVRKLQRDVSK----LEVFRKTLVQSLK 127 (278)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaK----LE~FKk~LmqSLq 127 (278)
+|.+....|...|+.|.+.-.+ |+.++-.|-.-|+
T Consensus 74 eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~ 112 (119)
T COG1382 74 ELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALG 112 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444445544444333 3344444444433
No 467
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=63.22 E-value=1.6e+02 Score=29.08 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----HHHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK----LEVFRKT 121 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK----LE~FKk~ 121 (278)
..++.+.++..+.+++-+.+...|..+.+.|++ ||..|..
T Consensus 273 ~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~e 316 (359)
T PF10498_consen 273 QEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQE 316 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777777777766654 5555443
No 468
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=63.09 E-value=39 Score=28.64 Aligned_cols=30 Identities=17% Similarity=0.360 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
.|.....+|+-||..||..|-+-+..|.--
T Consensus 77 qRVdsVKEEnLKLrSENQVLGQYIeNLMSa 106 (120)
T KOG3650|consen 77 QRVDSVKEENLKLRSENQVLGQYIENLMSA 106 (120)
T ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHhh
Confidence 455578899999999999999988877643
No 469
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=62.97 E-value=25 Score=31.12 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
..|+.+|..+|-|....+.+++.+|+.|-..+.
T Consensus 104 D~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 104 DAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544444
No 470
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=62.97 E-value=39 Score=26.79 Aligned_cols=24 Identities=21% Similarity=0.367 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
..|.+.-+.+..++..|+..|+..
T Consensus 38 ~~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 38 TELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555444
No 471
>PRK10865 protein disaggregation chaperone; Provisional
Probab=62.93 E-value=34 Score=37.01 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=6.6
Q ss_pred cCCCCchhhHHHH
Q 023690 21 VLPSDPFEQLDVA 33 (278)
Q Consensus 21 vLP~DP~EQLdla 33 (278)
.||....+=+|.+
T Consensus 385 ~~pdkAi~LiD~a 397 (857)
T PRK10865 385 QLPDKAIDLIDEA 397 (857)
T ss_pred CCChHHHHHHHHH
Confidence 4555555544544
No 472
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=62.89 E-value=77 Score=28.28 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhhHHHHHH
Q 023690 96 KENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 96 ~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.|-+.+...+.+|..-|+|+|.
T Consensus 125 ~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 125 REMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3455566666777777777653
No 473
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=62.77 E-value=17 Score=34.39 Aligned_cols=41 Identities=10% Similarity=0.312 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHH---HHHHHH-HhhhHHHHHHHHHHHHhhccc
Q 023690 88 QADKERLSKENEAL---TNTVRK-LQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 88 ~ee~~kL~~E~~~L---a~TvKk-L~rDvaKLE~FKk~LmqSLq~ 128 (278)
.+||.+..+.-+.| .+.+.+ +++.+++|+.+|+.|||.+=-
T Consensus 372 l~EQ~kI~~~l~~l~~~~d~i~~~~~~~l~~L~~lKqslLqk~ft 416 (461)
T PRK09737 372 LEEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFR 416 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35556655544444 444544 577899999999999998643
No 474
>COG5570 Uncharacterized small protein [Function unknown]
Probab=62.75 E-value=15 Score=27.67 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023690 64 SRIAELQSQIESIYSSLS 81 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~ 81 (278)
.|+++|++|...||.+++
T Consensus 5 shl~eL~kkHg~le~ei~ 22 (57)
T COG5570 5 SHLAELEKKHGNLEREIQ 22 (57)
T ss_pred HHHHHHHHhhchHHHHHH
Confidence 466777777777777777
No 475
>PRK14160 heat shock protein GrpE; Provisional
Probab=62.70 E-value=1.3e+02 Score=27.83 Aligned_cols=39 Identities=10% Similarity=0.328 Sum_probs=30.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
-.+..|+.++..|.+++.+....+.+|++++-.+.+.+.
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aefe 92 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYD 92 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888888888888888888888877777776
No 476
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=62.67 E-value=1.1e+02 Score=32.52 Aligned_cols=36 Identities=25% Similarity=0.298 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
..|+.++..|-++|.+||..|...-.-+..|..++.
T Consensus 417 ~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~ 452 (607)
T KOG0240|consen 417 DILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLL 452 (607)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999999988655444444444433
No 477
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=62.66 E-value=86 Score=26.12 Aligned_cols=85 Identities=21% Similarity=0.322 Sum_probs=38.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (278)
.-+..|..+...|-....++...+.+++.++..+-..+. ........+...+ ..+=+......+|...+...|.-=
T Consensus 34 ~~~~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeS 112 (150)
T PF07200_consen 34 QEREELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEES 112 (150)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHH
Confidence 333444444555544444555555555555554444443 2222333333333 334444455666666666666655
Q ss_pred HHHHhhccc
Q 023690 120 KTLVQSLKD 128 (278)
Q Consensus 120 k~LmqSLq~ 128 (278)
..|.+.+.+
T Consensus 113 e~lae~fl~ 121 (150)
T PF07200_consen 113 EELAEEFLD 121 (150)
T ss_dssp HHHC-S-SS
T ss_pred HHHHHHHhC
Confidence 555555543
No 478
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=62.58 E-value=65 Score=33.94 Aligned_cols=31 Identities=19% Similarity=0.174 Sum_probs=22.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 023690 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (278)
Q Consensus 102 a~TvKkL~rDvaKLE~FKk~LmqSLq~d~~~ 132 (278)
......|.||+.-.+.+=..|++..++-.-.
T Consensus 369 e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~ 399 (726)
T PRK09841 369 QQEVLRLSRDVEAGRAVYLQLLNRQQELSIS 399 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567888888888888888887765443
No 479
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=62.55 E-value=1.4e+02 Score=31.36 Aligned_cols=79 Identities=20% Similarity=0.292 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---------------HH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA---------------LT 102 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~---------------La 102 (278)
|..||.+|=.+......+..-=..+...|+.|+...|.+.. ..|+.+.+.+..|++|... |+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLa 497 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLA 497 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHH
Q 023690 103 NTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 103 ~TvKkL~rDvaKLE~FK 119 (278)
+-..+|..+=...++||
T Consensus 498 smNeqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 498 SMNEQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHHHHh
No 480
>PF08537 NBP1: Fungal Nap binding protein NBP1; InterPro: IPR013743 NBP1 is a nuclear protein which has been shown in Saccharomyces cerevisiae (Bakers yeast) to be essential for the G2/M transition of the cell cycle.
Probab=62.52 E-value=1.1e+02 Score=30.31 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=20.8
Q ss_pred HHhcCCCCchhhHH-----HHHHHH-HHHHHHhhhhhHHH
Q 023690 18 VLQVLPSDPFEQLD-----VARKIT-SIAISTRVSDLESE 51 (278)
Q Consensus 18 il~vLP~DP~EQLd-----larkIt-s~A~atRVs~LE~E 51 (278)
|-..||.-+..+.. |-.+|+ |.|++.++..+.-+
T Consensus 109 i~~~lp~~~~~~~~e~r~~lk~RI~rSEAFKRKllE~kYD 148 (323)
T PF08537_consen 109 INSRLPNRERKSGREERRLLKDRILRSEAFKRKLLEKKYD 148 (323)
T ss_pred hhhhcCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 44566665555444 334454 88888887766544
No 481
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=62.21 E-value=89 Score=33.85 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=11.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHh
Q 023690 101 LTNTVRKLQRDVSKLEVFRKTLVQ 124 (278)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~Lmq 124 (278)
|....+...-.|..||-+++.+|+
T Consensus 239 le~i~~~~~dqlqel~~l~~a~~q 262 (716)
T KOG4593|consen 239 LEAINKNMKDQLQELEELERALSQ 262 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445555555555554
No 482
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=61.62 E-value=1.7e+02 Score=28.76 Aligned_cols=80 Identities=15% Similarity=0.283 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 33 ARKITSIAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~La-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
......+|-.-|. ....||..+. =-.+.+.+|+.+....+.+|..|+.+..+-..+|+.+.......+..+.++
T Consensus 206 s~~ni~~a~~e~~-----~S~~LR~~i~~~l~~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~ 280 (384)
T PF03148_consen 206 SNENIQRAEKERQ-----SSAQLREDIDSILEQTANDLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKN 280 (384)
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444444444443 3466777766 455667788888888888888777777777777777766666666666666
Q ss_pred HHHHHH
Q 023690 112 VSKLEV 117 (278)
Q Consensus 112 vaKLE~ 117 (278)
+..||.
T Consensus 281 i~~L~~ 286 (384)
T PF03148_consen 281 IEDLEK 286 (384)
T ss_pred HHHHHH
Confidence 655553
No 483
>PRK05689 fliJ flagellar biosynthesis chaperone; Validated
Probab=61.55 E-value=93 Score=25.76 Aligned_cols=33 Identities=6% Similarity=0.160 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
+....+..+-...-..+..-.+++..||.||-.
T Consensus 85 ~~v~~~~~~ve~~r~~~~~a~~~~k~lEkL~ek 117 (147)
T PRK05689 85 QQLTQWTQKVDNARKYWQEKKQRLEALETLQER 117 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555556666667766643
No 484
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.42 E-value=73 Score=25.24 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAEL 69 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~L 69 (278)
||..+..|--+++.-+..|.+|
T Consensus 6 lE~Ri~eLE~r~AfQE~tieeL 27 (72)
T COG2900 6 LEARIIELEIRLAFQEQTIEEL 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 485
>PF07956 DUF1690: Protein of Unknown function (DUF1690) ; InterPro: IPR012471 Family of uncharacterised fungal proteins.
Probab=61.37 E-value=80 Score=27.29 Aligned_cols=42 Identities=14% Similarity=0.194 Sum_probs=26.6
Q ss_pred CCCChHHHHhcCCCCc---hhhHHHHHHHHHHHHHHhhhhhHHHH
Q 023690 11 TFDLPEEVLQVLPSDP---FEQLDVARKITSIAISTRVSDLESEH 52 (278)
Q Consensus 11 ~F~lp~eil~vLP~DP---~EQLdlarkIts~A~atRVs~LE~E~ 52 (278)
-.++...+|.-|=+.+ |-.-..+-+.+.--|+.++.+||.|.
T Consensus 7 pv~fS~~ll~~L~~s~etD~sR~q~~e~~iq~Rva~eL~~L~~~~ 51 (142)
T PF07956_consen 7 PVQFSQSLLSQLQSSTETDSSRAQTLELHIQERVAEELKRLEEEE 51 (142)
T ss_pred CcccCHHHHHHHhCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777765433 34445555666777777777777764
No 486
>KOG0709 consensus CREB/ATF family transcription factor [Transcription]
Probab=61.35 E-value=17 Score=37.36 Aligned_cols=47 Identities=28% Similarity=0.325 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
|.+-|..|+.||.....+=+ +...+...|..+|..|.+++|||+--|
T Consensus 270 KkeYid~LE~rv~~~taeNq----eL~kkV~~Le~~N~sLl~qL~klQt~v 316 (472)
T KOG0709|consen 270 KKEYIDGLESRVSAFTAENQ----ELQKKVEELELSNRSLLAQLKKLQTLV 316 (472)
T ss_pred HhhHHHHHhhhhhhcccCcH----HHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 45556777777776665554 555556667777777777777776544
No 487
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=61.21 E-value=14 Score=32.49 Aligned_cols=7 Identities=29% Similarity=0.582 Sum_probs=3.3
Q ss_pred hHHHHHH
Q 023690 29 QLDVARK 35 (278)
Q Consensus 29 QLdlark 35 (278)
|++-|++
T Consensus 39 Qf~~t~~ 45 (146)
T PF05852_consen 39 QFQFTKK 45 (146)
T ss_pred HHHHHHH
Confidence 4544443
No 488
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=61.20 E-value=2.7 Score=45.20 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (278)
+..||.++..|+.++.+-++.+.+|......|+.++. ..|..+......|.+.+..|..++..+.+.+.---.-|
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k 259 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAK 259 (859)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhh
Confidence 4456666666666666666666666665555555555 44445555555555555555555555554444433333
No 489
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=61.20 E-value=33 Score=27.34 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
+-..+..|+..||.++..|..++.++...+.+|+.++..+
T Consensus 64 a~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~ 103 (105)
T cd00632 64 ARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQA 103 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 490
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=61.18 E-value=32 Score=27.88 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
|++.+..++++|++||..|..-.+--+.+|.--+.=||+
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vrqkn 62 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKVRQKN 62 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 491
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=61.05 E-value=49 Score=27.16 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
+-..|+.+..--..|..++..+.+++.+|.++...+.+.+|+|.+++
T Consensus 71 Ll~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk~E~ 117 (118)
T PF13815_consen 71 LLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLKKES 117 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 492
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=60.91 E-value=2.8 Score=43.01 Aligned_cols=59 Identities=17% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEA 100 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~ 100 (278)
..+|.+.|.||..|++.|..=.+.+++-|.|+-.=|.+.+ +||...+++..+++.|||.
T Consensus 368 ~~~~e~YEqEI~~LkErL~~S~rkLeEyErrLl~QEqqt~Kll~qyq~RLedSE~RLr~QQ~eKd~ 433 (495)
T PF12004_consen 368 MKEVEKYEQEIQSLKERLRMSHRKLEEYERRLLSQEQQTQKLLLQYQARLEDSEERLRRQQEEKDS 433 (495)
T ss_dssp ------------------------------------------------------------------
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhHHHHHHHhhhhHH
No 493
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=60.91 E-value=90 Score=30.11 Aligned_cols=72 Identities=24% Similarity=0.284 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.+.-||.+|-+++..|+-||-+....-.+||.-......--. +..++...|+|++..-.-.|.-|...|+-|
T Consensus 13 d~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~----~L~~kl~eLqkk~~Ea~lAVtPLKak~Asl 84 (277)
T PF15030_consen 13 DLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQD----ELQGKLEELQKKQHEANLAVTPLKAKLASL 84 (277)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhHhhccchHHHHHHHH
No 494
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=60.88 E-value=1.2e+02 Score=26.80 Aligned_cols=108 Identities=18% Similarity=0.244 Sum_probs=0.0
Q ss_pred hHHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 023690 15 PEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRI--------AELQSQIESIYSSLSDKLGQ 86 (278)
Q Consensus 15 p~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i--------~~Lq~r~s~le~~l~~rL~~ 86 (278)
|..+|-..=-|--++|.=+++-+..+++.+. .||.++..+...+.+-...+ .+|-..+-.--..+...+..
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~~-~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~~~ 102 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQK-RLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQAER 102 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023690 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (278)
..+....+...-+.|...+++|...+..|+.=+..|+
T Consensus 103 l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ 139 (221)
T PF04012_consen 103 LEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELK 139 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 495
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.81 E-value=67 Score=35.02 Aligned_cols=78 Identities=13% Similarity=0.244 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRI----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i----~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (278)
+++++.|++++..+|..=-+.- .+-++.+..++.++. ...+++..++..-.+=..+|+.+.||+.+|.==||
T Consensus 42 i~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~----eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKk 117 (793)
T KOG2180|consen 42 IQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIE----ELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKK 117 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHh
Q ss_pred HHHhhc
Q 023690 121 TLVQSL 126 (278)
Q Consensus 121 ~LmqSL 126 (278)
+|-.|+
T Consensus 118 NLTtSi 123 (793)
T KOG2180|consen 118 NLTTSI 123 (793)
T ss_pred hHHHHH
No 496
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=60.79 E-value=1.6e+02 Score=32.05 Aligned_cols=88 Identities=24% Similarity=0.338 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHH--
Q 023690 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------DKLGQAQADKE-- 92 (278)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------------~rL~~a~ee~~-- 92 (278)
..|-.+.+-.-..+..++..||..+..|-.+.+.-...++..+.....|..+|. .+|+.-.-++.
T Consensus 154 ~~Lt~aHq~~l~sL~~k~~~Le~~L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~~le~q~tlv~~LR~YvGeq~p~ 233 (739)
T PF07111_consen 154 SSLTQAHQEALASLTSKAEELEKSLESLETRRAGEAKELAEAQREADLLREQLSKTQEELEAQVTLVEQLRKYVGEQVPP 233 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhCCc
Q ss_pred -----HHHHHHHHHHHHHHHHhhhHHHH
Q 023690 93 -----RLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 93 -----kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.-..|+..|.+||++|+.|=+-|
T Consensus 234 ~~~~~~we~Er~~L~~tVq~L~edR~~L 261 (739)
T PF07111_consen 234 EVHSQAWEPEREELLETVQHLQEDRDAL 261 (739)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHH
No 497
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=60.76 E-value=99 Score=27.27 Aligned_cols=76 Identities=12% Similarity=0.204 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
+.|++=..+=-...+-.+|..||.+...|..++..-..++..|+++-..|-..+. ...+...++-+....+..+.|
T Consensus 80 l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~----~l~er~~e~l~~~~e~ver~k 155 (158)
T PF09744_consen 80 LLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYN----RLHERERELLRKLKEHVERQK 155 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
No 498
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=60.76 E-value=21 Score=28.32 Aligned_cols=36 Identities=25% Similarity=0.535 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
+..|+..|+..+..|+.++.+...+|..++..+..+
T Consensus 82 l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 82 LKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 499
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=60.69 E-value=7 Score=33.11 Aligned_cols=55 Identities=29% Similarity=0.392 Sum_probs=0.0
Q ss_pred CCChHHHHh--cCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 12 FDLPEEVLQ--VLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (278)
Q Consensus 12 F~lp~eil~--vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~ 71 (278)
|.+|.++|- |+...+++-+++.. .-...-..|+.|+..||.+|.+.-..-..|+.
T Consensus 87 f~IP~~llp~~~~~l~~~~~~~~~~-----~~~~~~~~ld~el~~lr~kL~~~~~~~~~L~~ 143 (144)
T PF05859_consen 87 FSIPEDLLPEDWIRLYHHEGLDFSS-----NQLEEDYELDAELEQLRRKLEEQRKLNAELEQ 143 (144)
T ss_pred ccCChhhcchhhhcccccccccccc-----ccccchhhHHHHHHHHHHHHHHHHHHHHHhhc
No 500
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=60.63 E-value=84 Score=33.07 Aligned_cols=107 Identities=14% Similarity=0.208 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 023690 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~ 103 (278)
||||--.++|..+-----.-+|-..-+...++-+--++++++.++-+...+..+. .+|+++.....-+-++|..+..
T Consensus 12 f~~l~r~~~~l~~g~e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~L~Ka~tk~~~ldvklkha~~~vda~ik~rr~ae~ 91 (604)
T KOG3564|consen 12 FEQLVRDIEILGEGNEDEFIRLRKDFEDFEEKWKRTDAELGKYKDLLAKAETKRSALDVKLKHARNQVDAEIKRRRRAEA 91 (604)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHhhhHHHH-HHHHHHHHhhcccccCCC
Q 023690 104 TVRKLQRDVSKL-EVFRKTLVQSLKDDEDAS 133 (278)
Q Consensus 104 TvKkL~rDvaKL-E~FKk~LmqSLq~d~~~~ 133 (278)
-..+|...+.-+ +.||--.-.||+-.+...
T Consensus 92 d~~~~E~~i~~i~d~l~~~~~~s~~~~d~~~ 122 (604)
T KOG3564|consen 92 DCEKLETQIQLIKDMLKCDISGSIQLSDEQK 122 (604)
T ss_pred hHHHHHHHHHHHHHHHhcccccccccchhhh
Done!