Query 023690
Match_columns 278
No_of_seqs 79 out of 81
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 11:09:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023690.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023690hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.0 0.019 6.5E-07 46.9 13.5 42 40-81 3-44 (284)
2 3hnw_A Uncharacterized protein 97.0 0.01 3.6E-07 49.4 11.9 71 37-111 62-132 (138)
3 3u1c_A Tropomyosin alpha-1 cha 96.8 0.025 8.7E-07 44.6 12.5 77 40-116 20-99 (101)
4 2dfs_A Myosin-5A; myosin-V, in 96.7 0.018 6.1E-07 61.2 13.6 80 41-122 982-1061(1080)
5 3a7p_A Autophagy protein 16; c 96.4 0.048 1.6E-06 46.7 12.0 75 37-115 69-144 (152)
6 3u59_A Tropomyosin beta chain; 96.3 0.12 4.3E-06 40.3 13.1 77 40-116 20-99 (101)
7 3bas_A Myosin heavy chain, str 96.0 0.098 3.4E-06 40.3 10.9 70 44-113 15-87 (89)
8 2v4h_A NF-kappa-B essential mo 95.9 0.12 4.3E-06 42.1 11.5 64 49-116 44-110 (110)
9 2dfs_A Myosin-5A; myosin-V, in 95.7 0.011 3.8E-07 62.7 5.9 71 45-115 923-996 (1080)
10 3o0z_A RHO-associated protein 95.6 0.091 3.1E-06 45.6 10.3 79 47-129 66-155 (168)
11 2fxo_A Myosin heavy chain, car 95.3 0.43 1.5E-05 38.7 12.9 33 82-114 62-94 (129)
12 3cvf_A Homer-3, homer protein 95.3 0.098 3.4E-06 40.4 8.4 56 46-105 2-57 (79)
13 2b9c_A Striated-muscle alpha t 95.2 0.36 1.2E-05 40.6 12.5 76 38-113 47-125 (147)
14 3a7o_A Autophagy protein 16; c 95.2 0.13 4.5E-06 39.4 8.7 61 45-109 13-73 (75)
15 2v71_A Nuclear distribution pr 94.7 0.51 1.7E-05 41.5 12.6 41 88-128 94-134 (189)
16 3oja_B Anopheles plasmodium-re 94.7 0.2 6.8E-06 47.7 10.7 41 89-129 544-584 (597)
17 2efr_A General control protein 94.7 0.8 2.7E-05 39.0 13.3 79 38-116 65-146 (155)
18 2fxo_A Myosin heavy chain, car 94.6 0.68 2.3E-05 37.5 12.3 76 41-116 39-124 (129)
19 3m9b_A Proteasome-associated A 94.2 0.033 1.1E-06 51.0 4.0 69 42-115 23-94 (251)
20 3i00_A HIP-I, huntingtin-inter 94.0 0.36 1.2E-05 39.6 9.4 53 48-100 20-79 (120)
21 3nmd_A CGMP dependent protein 94.0 0.2 6.7E-06 38.2 7.2 46 52-101 21-66 (72)
22 1i84_S Smooth muscle myosin he 94.0 0.35 1.2E-05 51.3 11.7 75 44-118 858-942 (1184)
23 3oja_B Anopheles plasmodium-re 93.9 0.68 2.3E-05 44.0 12.5 22 92-113 540-561 (597)
24 2v66_B Nuclear distribution pr 93.7 1.3 4.5E-05 36.0 12.1 61 39-99 6-73 (111)
25 1ic2_A Tropomyosin alpha chain 93.6 1.4 4.8E-05 33.0 11.3 42 40-81 3-44 (81)
26 3hnw_A Uncharacterized protein 93.6 0.83 2.8E-05 37.9 11.0 63 51-117 69-131 (138)
27 3jsv_C NF-kappa-B essential mo 93.5 0.82 2.8E-05 36.4 10.2 66 48-117 21-89 (94)
28 3mq9_A Bone marrow stromal ant 93.4 2 7E-05 40.0 14.7 63 55-117 402-464 (471)
29 2q6q_A Spindle POLE BODY compo 93.4 0.69 2.4E-05 35.2 9.2 59 51-113 4-62 (74)
30 3na7_A HP0958; flagellar bioge 93.3 1.6 5.6E-05 38.4 13.1 82 25-108 88-169 (256)
31 3s4r_A Vimentin; alpha-helix, 93.2 1.7 5.9E-05 33.7 11.6 71 40-116 20-90 (93)
32 1l8d_A DNA double-strand break 93.1 1.7 5.7E-05 33.5 11.5 32 45-76 12-43 (112)
33 3tnu_B Keratin, type II cytosk 93.1 1.8 6.2E-05 34.8 12.0 21 40-60 40-60 (129)
34 3na7_A HP0958; flagellar bioge 92.8 1.8 6.3E-05 38.1 12.7 28 99-126 146-173 (256)
35 3vkg_A Dynein heavy chain, cyt 92.7 0.65 2.2E-05 54.7 12.1 74 42-115 2013-2103(3245)
36 1i84_S Smooth muscle myosin he 92.5 0.91 3.1E-05 48.2 12.1 15 45-59 887-901 (1184)
37 2v71_A Nuclear distribution pr 92.3 2.1 7.3E-05 37.6 12.3 67 40-106 60-133 (189)
38 4emc_A Monopolin complex subun 92.3 0.44 1.5E-05 42.1 7.8 37 45-81 22-58 (190)
39 3tnu_A Keratin, type I cytoske 92.2 1.7 5.8E-05 35.2 10.8 20 41-60 43-62 (131)
40 4fm3_A Uncharacterized hypothe 91.8 1.9 6.4E-05 34.4 10.3 87 26-112 5-94 (98)
41 3nmd_A CGMP dependent protein 91.7 0.55 1.9E-05 35.7 6.9 38 44-81 20-57 (72)
42 2v66_B Nuclear distribution pr 91.7 3.5 0.00012 33.5 12.0 79 51-129 4-82 (111)
43 1gd2_E Transcription factor PA 91.6 0.37 1.3E-05 36.2 5.8 45 60-115 25-69 (70)
44 1cii_A Colicin IA; bacteriocin 91.3 2 6.8E-05 43.0 12.1 64 50-113 349-415 (602)
45 3a7p_A Autophagy protein 16; c 90.8 3.2 0.00011 35.5 11.5 30 86-115 100-129 (152)
46 2xnx_M M protein, M1-BC1; cell 90.7 0.16 5.6E-06 43.2 3.3 37 86-122 98-134 (146)
47 2akf_A Coronin-1A; coiled coil 90.3 0.34 1.2E-05 31.5 3.8 30 45-81 1-30 (32)
48 2eqb_B RAB guanine nucleotide 90.3 5.9 0.0002 31.6 11.8 71 43-113 19-93 (97)
49 3tnu_A Keratin, type I cytoske 90.2 5.2 0.00018 32.3 11.8 74 49-122 37-117 (131)
50 1gk4_A Vimentin; intermediate 90.0 5 0.00017 30.3 10.9 67 40-113 5-71 (84)
51 3tnu_B Keratin, type II cytosk 89.9 5.7 0.0002 31.9 11.8 75 48-122 34-115 (129)
52 1x4t_A Hypothetical protein LO 89.9 0.37 1.3E-05 38.3 4.5 48 62-109 30-79 (92)
53 2jee_A YIIU; FTSZ, septum, coi 89.9 4.6 0.00016 31.3 10.6 62 48-109 11-75 (81)
54 1l8d_A DNA double-strand break 89.9 4.5 0.00015 31.1 10.7 38 44-81 4-41 (112)
55 2e7s_A RAB guanine nucleotide 89.5 1.8 6.2E-05 36.3 8.7 46 25-71 5-53 (135)
56 3etw_A Adhesin A; antiparallel 89.1 8.4 0.00029 31.6 13.1 29 91-119 77-105 (119)
57 3cve_A Homer protein homolog 1 88.9 4.5 0.00016 30.6 9.7 46 55-104 5-50 (72)
58 4etp_A Kinesin-like protein KA 88.8 0.59 2E-05 44.5 5.9 39 42-80 2-40 (403)
59 1m1j_B Fibrinogen beta chain; 88.6 6.9 0.00024 38.4 13.4 73 54-127 125-199 (464)
60 1x79_B RAB GTPase binding effe 88.4 2.3 7.7E-05 34.7 8.3 16 45-60 8-23 (112)
61 1go4_E MAD1 (mitotic arrest de 88.2 2.4 8.2E-05 33.9 8.2 20 39-58 15-34 (100)
62 1ic2_A Tropomyosin alpha chain 87.9 6.2 0.00021 29.5 10.0 42 40-81 17-58 (81)
63 2wt7_A Proto-oncogene protein 87.9 3.4 0.00012 29.7 8.2 33 86-118 27-59 (63)
64 3mq7_A Bone marrow stromal ant 87.8 2.7 9.2E-05 34.8 8.5 60 48-107 30-89 (121)
65 3ghg_A Fibrinogen alpha chain; 87.6 2.5 8.4E-05 42.5 9.7 61 68-132 114-195 (562)
66 3ghg_A Fibrinogen alpha chain; 87.5 6.6 0.00022 39.5 12.5 61 57-117 92-152 (562)
67 3o0z_A RHO-associated protein 87.4 13 0.00046 32.0 13.2 81 45-125 43-126 (168)
68 3u1c_A Tropomyosin alpha-1 cha 87.4 8.8 0.0003 29.9 11.3 42 40-81 6-47 (101)
69 1wt6_A Myotonin-protein kinase 87.0 4.9 0.00017 31.2 9.1 55 46-108 17-71 (81)
70 3q8t_A Beclin-1; autophagy, AT 87.0 9.2 0.00032 29.7 12.5 77 40-116 8-94 (96)
71 2xdj_A Uncharacterized protein 87.0 5.6 0.00019 30.5 9.4 23 91-113 43-65 (83)
72 1t2k_D Cyclic-AMP-dependent tr 86.9 6.3 0.00022 27.9 9.1 32 86-117 26-57 (61)
73 1x8y_A Lamin A/C; structural p 86.6 3.4 0.00012 31.5 8.0 66 41-113 8-73 (86)
74 2no2_A HIP-I, huntingtin-inter 86.5 11 0.00037 30.0 13.7 39 86-124 65-103 (107)
75 3s9g_A Protein hexim1; cyclin 86.2 3.5 0.00012 33.3 8.1 50 39-99 40-89 (104)
76 3qh9_A Liprin-beta-2; coiled-c 86.0 1.5 5E-05 34.1 5.6 35 39-73 29-77 (81)
77 1x8y_A Lamin A/C; structural p 85.9 7.2 0.00025 29.6 9.5 66 50-122 3-68 (86)
78 3mq9_A Bone marrow stromal ant 85.9 16 0.00056 33.8 13.8 16 66-81 399-414 (471)
79 1ci6_A Transcription factor AT 85.9 1.9 6.6E-05 31.2 6.0 35 83-117 24-58 (63)
80 1lwu_C Fibrinogen gamma chain; 85.7 2.3 7.8E-05 39.9 7.9 42 40-81 2-43 (323)
81 2ocy_A RAB guanine nucleotide 85.4 16 0.00056 31.0 13.2 21 105-129 131-151 (154)
82 4etp_A Kinesin-like protein KA 85.1 2.2 7.7E-05 40.4 7.7 27 52-78 5-31 (403)
83 3mov_A Lamin-B1; LMNB1, B-type 85.0 3.5 0.00012 32.2 7.5 64 44-114 20-83 (95)
84 1hjb_A Ccaat/enhancer binding 84.7 4.1 0.00014 31.6 7.6 33 86-118 40-72 (87)
85 2xdj_A Uncharacterized protein 84.6 4.7 0.00016 31.0 7.9 40 39-78 23-62 (83)
86 1jnm_A Proto-oncogene C-JUN; B 84.4 3.3 0.00011 29.6 6.6 33 84-116 24-56 (62)
87 4ghu_A TNF receptor-associated 84.2 1.3 4.5E-05 37.8 5.1 32 47-78 4-35 (198)
88 1ik9_A DNA repair protein XRCC 84.1 19 0.00067 31.6 12.7 90 24-130 117-206 (213)
89 3ol1_A Vimentin; structural ge 84.0 15 0.0005 29.4 12.3 20 99-118 86-105 (119)
90 3u59_A Tropomyosin beta chain; 83.5 14 0.00047 28.6 12.3 42 40-81 6-47 (101)
91 4dci_A Uncharacterized protein 83.4 7.8 0.00027 32.8 9.5 63 62-128 27-102 (150)
92 3efg_A Protein SLYX homolog; x 83.3 4.9 0.00017 30.4 7.5 29 101-129 33-61 (78)
93 1t2k_D Cyclic-AMP-dependent tr 83.1 4.6 0.00016 28.6 6.8 39 61-103 19-57 (61)
94 3bas_A Myosin heavy chain, str 82.7 14 0.00048 28.1 10.1 61 58-122 15-75 (89)
95 2jee_A YIIU; FTSZ, septum, coi 82.2 9.5 0.00033 29.5 8.7 31 86-116 31-61 (81)
96 4dyl_A Tyrosine-protein kinase 82.0 11 0.00039 35.1 11.0 90 36-130 302-393 (406)
97 3htk_A Structural maintenance 81.8 8.2 0.00028 26.8 7.7 47 46-96 8-54 (60)
98 1d7m_A Cortexillin I; coiled-c 81.8 18 0.00062 28.8 12.8 43 34-76 16-58 (101)
99 3he4_A Synzip6; heterodimeric 81.6 0.78 2.7E-05 32.8 2.2 28 87-114 29-56 (56)
100 2lw1_A ABC transporter ATP-bin 81.3 9.7 0.00033 28.7 8.5 17 64-80 29-45 (89)
101 3oja_A Leucine-rich immune mol 80.9 15 0.0005 34.3 11.3 27 40-66 364-390 (487)
102 3m91_A Proteasome-associated A 80.9 6.7 0.00023 27.8 6.9 34 64-101 16-49 (51)
103 1yf2_A Type I restriction-modi 80.8 2.6 8.8E-05 37.1 5.8 39 88-126 378-416 (425)
104 2ocy_A RAB guanine nucleotide 80.1 12 0.00042 31.8 9.6 28 27-55 19-46 (154)
105 1deq_A Fibrinogen (alpha chain 79.9 13 0.00046 35.9 10.8 17 39-55 63-79 (390)
106 1gu4_A CAAT/enhancer binding p 79.4 6.1 0.00021 30.0 6.7 33 86-118 40-72 (78)
107 4emc_A Monopolin complex subun 79.2 5.5 0.00019 35.2 7.3 58 54-115 10-67 (190)
108 1gd2_E Transcription factor PA 79.0 3.7 0.00013 30.7 5.3 37 43-79 29-65 (70)
109 3oja_A Leucine-rich immune mol 78.7 42 0.0014 31.2 13.8 24 38-61 369-392 (487)
110 2wt7_A Proto-oncogene protein 78.5 9.1 0.00031 27.4 7.2 40 61-104 20-59 (63)
111 3s4r_A Vimentin; alpha-helix, 78.3 20 0.00069 27.6 9.6 62 43-110 30-91 (93)
112 2eqb_B RAB guanine nucleotide 78.1 11 0.00038 30.0 8.1 51 49-103 11-61 (97)
113 3k29_A Putative uncharacterize 77.9 34 0.0012 29.7 16.3 60 22-81 2-65 (169)
114 2efr_A General control protein 77.8 18 0.00063 30.6 9.9 33 48-80 26-58 (155)
115 1yf2_A Type I restriction-modi 77.3 3.8 0.00013 36.0 5.8 40 88-127 168-207 (425)
116 2no2_A HIP-I, huntingtin-inter 77.2 25 0.00087 27.9 13.8 69 51-119 16-84 (107)
117 3kqg_A Langerin, C-type lectin 77.0 4 0.00014 32.8 5.4 31 46-80 2-32 (182)
118 1m1j_A Fibrinogen alpha subuni 76.9 31 0.001 34.3 12.5 44 38-81 60-117 (491)
119 2oqq_A Transcription factor HY 76.9 4.4 0.00015 28.0 4.7 21 60-80 13-33 (42)
120 2oqq_A Transcription factor HY 76.7 9.3 0.00032 26.4 6.3 37 66-106 5-41 (42)
121 3m91_A Proteasome-associated A 76.3 10 0.00036 26.8 6.7 30 86-115 20-49 (51)
122 2gkw_A TNF receptor-associated 76.2 3.9 0.00013 34.3 5.3 33 46-78 3-35 (192)
123 4h22_A Leucine-rich repeat fli 75.9 18 0.00061 29.2 8.8 24 92-115 54-77 (103)
124 4h22_A Leucine-rich repeat fli 75.6 23 0.00079 28.5 9.4 23 51-73 31-53 (103)
125 3vkg_A Dynein heavy chain, cyt 75.5 27 0.00094 41.6 13.5 10 121-130 2077-2086(3245)
126 3swy_A Cyclic nucleotide-gated 75.4 15 0.00051 25.6 7.2 43 68-117 2-44 (46)
127 3u06_A Protein claret segregat 75.3 7.5 0.00026 37.1 7.7 31 46-76 6-36 (412)
128 3m9b_A Proteasome-associated A 75.2 2.5 8.4E-05 38.7 4.1 36 82-117 54-89 (251)
129 3u06_A Protein claret segregat 75.1 3.8 0.00013 39.2 5.6 47 86-132 14-60 (412)
130 4dk0_A Putative MACA; alpha-ha 75.0 12 0.00041 33.3 8.5 18 45-62 72-89 (369)
131 3plt_A Sphingolipid long chain 75.0 47 0.0016 30.0 12.4 41 41-81 67-107 (234)
132 3fpp_A Macrolide-specific effl 75.0 19 0.00065 31.6 9.7 18 45-62 71-88 (341)
133 3qne_A Seryl-tRNA synthetase, 74.5 16 0.00054 36.0 9.8 61 67-128 50-110 (485)
134 2fcw_A Alpha-2-macroglobulin r 74.2 34 0.0012 27.8 11.6 72 49-124 23-103 (109)
135 1ydx_A Type I restriction enzy 74.1 5 0.00017 35.9 5.8 41 87-127 353-393 (406)
136 4aj5_1 SKA3, spindle and kinet 74.0 33 0.0011 27.6 11.4 73 46-118 16-96 (101)
137 2p22_A Suppressor protein STP2 73.7 13 0.00046 32.0 8.2 33 86-118 60-92 (174)
138 3m48_A General control protein 73.6 4.2 0.00014 26.8 3.7 26 84-109 2-27 (33)
139 2hy6_A General control protein 73.6 5 0.00017 26.6 4.1 28 83-110 2-29 (34)
140 2wvr_A Geminin; DNA replicatio 73.5 22 0.00074 31.8 9.5 62 56-118 107-169 (209)
141 4afl_A P29ING4, inhibitor of g 72.8 29 0.001 26.5 12.1 76 41-116 9-100 (104)
142 1jnm_A Proto-oncogene C-JUN; B 72.8 5.1 0.00017 28.5 4.5 37 61-101 19-55 (62)
143 2dq0_A Seryl-tRNA synthetase; 72.6 19 0.00064 34.7 9.8 68 61-129 42-109 (455)
144 2cly_A ATP synthase B chain, m 72.5 36 0.0012 30.2 10.8 50 48-97 82-137 (214)
145 1gk4_A Vimentin; intermediate 72.5 28 0.00096 26.1 10.3 54 69-122 13-66 (84)
146 2w83_C C-JUN-amino-terminal ki 72.5 8.6 0.00029 29.6 5.9 30 86-115 41-70 (77)
147 1wlq_A Geminin; coiled-coil; 2 72.3 25 0.00086 27.3 8.5 51 57-108 31-81 (83)
148 2xnx_M M protein, M1-BC1; cell 71.8 27 0.00093 29.7 9.4 32 86-117 77-108 (146)
149 3q8t_A Beclin-1; autophagy, AT 71.6 33 0.0011 26.5 11.8 35 47-81 8-42 (96)
150 3e98_A GAF domain of unknown f 71.5 15 0.0005 32.7 8.2 90 15-131 33-134 (252)
151 3c3g_A Alpha/beta peptide with 70.9 5.1 0.00018 26.4 3.7 26 84-109 2-27 (33)
152 3oa7_A Head morphogenesis prot 70.8 11 0.00038 33.6 7.0 60 61-125 27-86 (206)
153 3he5_A Synzip1; heterodimeric 70.8 16 0.00056 25.4 6.5 35 43-77 10-44 (49)
154 3swk_A Vimentin; cytoskeleton, 70.7 32 0.0011 26.1 9.1 14 100-113 67-80 (86)
155 3m0d_C TNF receptor-associated 70.6 17 0.00057 26.3 6.9 46 32-78 17-62 (65)
156 1uo4_A General control protein 70.3 5.5 0.00019 26.4 3.8 27 83-109 2-28 (34)
157 4b6x_A AVRRPS4, avirulence pro 70.3 20 0.00067 28.1 7.5 57 53-109 25-89 (90)
158 1m1j_C Fibrinogen gamma chain; 70.1 37 0.0013 32.7 11.1 33 39-71 34-66 (409)
159 3m0a_A TNF receptor-associated 69.8 23 0.00078 25.1 7.4 14 48-61 3-16 (66)
160 3thf_A Protein shroom; coiled- 69.2 32 0.0011 30.3 9.6 57 65-122 71-127 (190)
161 2r2v_A GCN4 leucine zipper; co 69.0 6.3 0.00021 26.1 3.8 27 83-109 2-28 (34)
162 2v4h_A NF-kappa-B essential mo 68.8 18 0.00063 29.4 7.4 30 51-80 25-54 (110)
163 3c3f_A Alpha/beta peptide with 68.7 6.1 0.00021 26.2 3.7 27 83-109 2-28 (34)
164 2oxj_A Hybrid alpha/beta pepti 68.6 6.1 0.00021 26.2 3.7 27 83-109 2-28 (34)
165 2qyw_A Vesicle transport throu 68.6 39 0.0013 26.2 9.8 19 97-115 79-97 (102)
166 1dh3_A Transcription factor CR 68.6 23 0.0008 24.8 7.1 34 61-112 19-52 (55)
167 1kd8_A GABH AIV, GCN4 acid bas 68.3 5.7 0.0002 26.6 3.6 29 84-112 3-31 (36)
168 3ibp_A Chromosome partition pr 68.3 32 0.0011 32.2 9.9 22 93-114 80-101 (302)
169 1gmj_A ATPase inhibitor; coile 68.3 40 0.0014 26.2 8.9 61 36-110 17-79 (84)
170 1hjb_A Ccaat/enhancer binding 68.1 13 0.00045 28.7 6.2 12 44-55 44-55 (87)
171 1m1j_C Fibrinogen gamma chain; 68.0 45 0.0015 32.1 11.2 10 244-253 333-342 (409)
172 3iv1_A Tumor susceptibility ge 68.0 38 0.0013 25.9 9.9 60 53-116 14-73 (78)
173 3ghg_B Fibrinogen beta chain; 67.9 43 0.0015 33.0 11.2 88 39-126 91-193 (461)
174 3swf_A CGMP-gated cation chann 67.9 23 0.00077 27.0 7.3 50 67-123 3-52 (74)
175 1ydx_A Type I restriction enzy 67.9 8.4 0.00029 34.4 5.8 40 88-127 166-205 (406)
176 2lw1_A ABC transporter ATP-bin 67.7 25 0.00086 26.4 7.7 42 40-81 26-73 (89)
177 3viq_B Mating-type switching p 67.4 14 0.00048 28.7 6.2 65 46-116 4-68 (85)
178 3c9i_A Tail needle protein GP2 67.3 53 0.0018 29.7 10.7 97 19-115 28-145 (242)
179 2xv5_A Lamin-A/C; structural p 67.0 30 0.001 25.9 7.8 45 65-113 6-50 (74)
180 1ztm_A Fusion glycoprotein; fu 66.8 15 0.00051 36.5 7.8 77 30-116 102-180 (490)
181 1zxa_A CGMP-dependent protein 66.7 6.7 0.00023 29.3 4.1 18 54-71 15-32 (67)
182 3mq7_A Bone marrow stromal ant 66.0 55 0.0019 27.0 12.5 50 52-105 55-108 (121)
183 1dh3_A Transcription factor CR 65.9 21 0.00072 25.1 6.4 10 45-54 24-33 (55)
184 1zhc_A Hypothetical protein HP 65.4 9.6 0.00033 28.4 4.8 64 53-117 6-72 (76)
185 1wle_A Seryl-tRNA synthetase; 65.1 70 0.0024 31.3 12.2 68 61-129 81-156 (501)
186 1fzc_C Fibrin; blood coagulati 65.0 5.3 0.00018 37.4 4.0 40 41-80 9-48 (319)
187 1ykh_B RNA polymerase II holoe 64.9 50 0.0017 26.8 9.5 78 27-112 52-129 (132)
188 3d5a_X RF1, peptide chain rele 64.8 39 0.0013 32.1 10.0 82 44-125 4-99 (354)
189 1yke_B RNA polymerase II holoe 64.5 48 0.0016 27.7 9.5 78 27-112 52-129 (151)
190 2wq1_A General control protein 64.1 10 0.00035 25.0 4.1 26 84-109 2-27 (33)
191 2odv_A Plectin 1, HD1; plakin 63.2 34 0.0011 30.2 8.7 90 30-119 98-195 (235)
192 1m1j_B Fibrinogen beta chain; 63.1 1.1E+02 0.0039 29.9 13.2 41 41-81 98-138 (464)
193 2akf_A Coronin-1A; coiled coil 62.9 10 0.00034 24.6 3.8 25 93-117 3-27 (32)
194 2ke4_A CDC42-interacting prote 62.2 37 0.0013 26.6 7.9 28 89-116 62-89 (98)
195 3lss_A Seryl-tRNA synthetase; 62.2 84 0.0029 30.8 12.1 40 89-128 99-143 (484)
196 2bni_A General control protein 62.1 10 0.00034 25.2 3.8 27 83-109 2-28 (34)
197 3ol1_A Vimentin; structural ge 62.0 40 0.0014 26.8 8.2 6 48-53 39-44 (119)
198 3he5_B Synzip2; heterodimeric 61.9 21 0.00072 25.1 5.6 29 89-117 17-45 (52)
199 3ghg_C Fibrinogen gamma chain; 61.3 25 0.00084 34.1 8.0 34 40-73 35-68 (411)
200 1zxa_A CGMP-dependent protein 61.0 15 0.00051 27.4 5.1 33 49-81 24-56 (67)
201 1ci6_A Transcription factor AT 60.8 33 0.0011 24.5 6.8 36 62-101 21-56 (63)
202 3mud_A DNA repair protein XRCC 60.7 41 0.0014 29.2 8.6 50 52-108 123-172 (175)
203 2dgc_A Protein (GCN4); basic d 60.5 13 0.00044 26.9 4.6 34 61-112 27-60 (63)
204 1ca9_A TRAF2, protein (TNF rec 59.9 12 0.00042 30.9 5.0 33 45-77 5-37 (192)
205 1kd8_B GABH BLL, GCN4 acid bas 59.9 18 0.00063 24.2 4.8 13 44-56 2-14 (36)
206 1lwu_C Fibrinogen gamma chain; 59.7 28 0.00096 32.5 7.9 10 244-253 253-262 (323)
207 1gqe_A Release factor 2, RF2; 59.4 1.1E+02 0.0036 29.2 11.9 86 32-117 14-115 (365)
208 3bbp_D GRIP and coiled-coil do 59.3 6.7 0.00023 29.8 3.0 45 69-113 20-67 (71)
209 2q12_A DIP13 alpha, DCC-intera 59.3 78 0.0027 27.2 10.3 86 41-127 19-108 (265)
210 2i1j_A Moesin; FERM, coiled-co 59.3 5.4 0.00018 39.5 3.1 40 39-78 338-377 (575)
211 2zxx_A Geminin; coiled-coil, c 59.1 50 0.0017 25.3 7.9 20 61-80 31-50 (79)
212 3cl3_D NF-kappa-B essential mo 58.9 21 0.00073 29.8 6.2 40 39-81 33-72 (130)
213 1gu4_A CAAT/enhancer binding p 58.8 14 0.00048 28.0 4.7 19 90-108 51-69 (78)
214 4h8s_A DCC-interacting protein 58.8 26 0.00087 32.2 7.4 21 41-61 42-62 (407)
215 4fla_A Regulation of nuclear P 58.7 71 0.0024 26.7 9.5 56 49-112 85-140 (152)
216 2yy0_A C-MYC-binding protein; 58.5 21 0.0007 25.2 5.2 28 50-77 19-46 (53)
217 2ke4_A CDC42-interacting prote 58.1 40 0.0014 26.4 7.4 31 92-122 58-88 (98)
218 2w6a_A ARF GTPase-activating p 58.0 54 0.0019 24.2 8.1 34 84-117 22-55 (63)
219 2wt7_B Transcription factor MA 57.7 29 0.001 27.1 6.5 36 64-103 48-83 (90)
220 2e7s_A RAB guanine nucleotide 57.4 11 0.00039 31.5 4.3 86 39-128 35-124 (135)
221 3efg_A Protein SLYX homolog; x 57.4 26 0.00087 26.4 5.9 49 64-116 14-62 (78)
222 3qh9_A Liprin-beta-2; coiled-c 57.2 62 0.0021 25.0 8.1 45 65-109 27-74 (81)
223 4e61_A Protein BIM1; EB1-like 57.2 74 0.0025 25.6 9.7 46 47-92 8-56 (106)
224 3mov_A Lamin-B1; LMNB1, B-type 57.2 66 0.0022 24.9 9.2 40 83-122 38-77 (95)
225 1kd8_B GABH BLL, GCN4 acid bas 57.1 17 0.00057 24.4 4.2 28 83-110 2-29 (36)
226 3ajw_A Flagellar FLIJ protein; 56.8 67 0.0023 25.0 11.6 36 86-121 85-120 (150)
227 1uii_A Geminin; human, DNA rep 56.7 23 0.00078 27.5 5.6 33 85-117 42-74 (83)
228 1deq_A Fibrinogen (alpha chain 56.4 82 0.0028 30.5 10.6 28 54-81 92-119 (390)
229 2aze_A Transcription factor DP 56.3 40 0.0014 28.8 7.6 35 43-77 5-39 (155)
230 1nfn_A Apolipoprotein E3; lipi 56.3 53 0.0018 28.0 8.5 28 98-125 134-162 (191)
231 1fxk_C Protein (prefoldin); ar 56.1 71 0.0024 25.0 11.8 39 90-128 89-127 (133)
232 1gk6_A Vimentin; intermediate 56.1 29 0.00098 24.6 5.7 41 68-112 4-44 (59)
233 2w6b_A RHO guanine nucleotide 56.0 52 0.0018 23.9 7.0 41 87-127 15-55 (56)
234 2q13_A DCC-interacting protein 56.0 48 0.0017 30.1 8.7 21 41-61 19-39 (385)
235 3m0a_A TNF receptor-associated 56.0 50 0.0017 23.2 9.5 47 32-79 16-62 (66)
236 1vcs_A Vesicle transport throu 55.7 30 0.001 26.8 6.3 54 60-117 34-88 (102)
237 1x79_B RAB GTPase binding effe 54.9 83 0.0028 25.4 12.7 15 66-80 47-61 (112)
238 1fxk_C Protein (prefoldin); ar 54.5 33 0.0011 26.9 6.5 37 41-77 93-129 (133)
239 2zqm_A Prefoldin beta subunit 54.3 67 0.0023 24.2 11.4 27 44-70 14-40 (117)
240 2olt_A Hypothetical protein; s 54.3 96 0.0033 25.9 10.7 45 18-62 7-72 (227)
241 3c9i_A Tail needle protein GP2 54.2 1.3E+02 0.0043 27.3 14.7 61 52-112 86-149 (242)
242 1gqe_A Release factor 2, RF2; 53.7 59 0.002 31.0 9.1 30 43-72 9-40 (365)
243 1lq7_A Alpha3W; three helix bu 53.7 13 0.00043 27.4 3.5 12 44-55 3-14 (67)
244 2aze_B Transcription factor E2 53.6 20 0.00069 28.4 5.0 33 41-73 4-36 (106)
245 2pms_C Pneumococcal surface pr 53.4 18 0.00061 30.0 4.8 25 92-116 64-88 (125)
246 4b4t_K 26S protease regulatory 53.0 22 0.00075 34.0 6.1 35 83-117 50-84 (428)
247 3rrk_A V-type ATPase 116 kDa s 52.8 65 0.0022 28.9 8.9 50 66-119 228-278 (357)
248 3kpe_A Fusion glycoprotein F0; 52.7 59 0.002 23.1 7.0 35 47-81 1-35 (51)
249 1bg1_A Protein (transcription 52.2 47 0.0016 33.7 8.5 38 43-80 13-50 (596)
250 1f5n_A Interferon-induced guan 52.1 46 0.0016 33.2 8.4 22 59-80 482-503 (592)
251 3a7o_A Autophagy protein 16; c 52.1 76 0.0026 24.2 9.0 43 37-79 19-61 (75)
252 1nkp_B MAX protein, MYC proto- 52.0 33 0.0011 25.3 5.7 20 92-111 50-69 (83)
253 1ik9_A DNA repair protein XRCC 51.7 1.2E+02 0.0042 26.4 13.4 73 40-112 136-209 (213)
254 2dnx_A Syntaxin-12; snare, HAB 51.7 90 0.0031 24.9 13.2 86 30-116 13-118 (130)
255 1ez3_A Syntaxin-1A; three heli 51.5 78 0.0027 24.1 8.2 19 41-59 10-28 (127)
256 1wle_A Seryl-tRNA synthetase; 51.2 1.2E+02 0.004 29.8 11.0 70 58-131 71-151 (501)
257 2yy0_A C-MYC-binding protein; 51.1 25 0.00085 24.7 4.7 27 89-115 19-45 (53)
258 2d4y_A HAP1, flagellar HOOK-as 50.9 90 0.0031 29.4 9.9 70 38-108 73-148 (463)
259 1kd8_A GABH AIV, GCN4 acid bas 50.9 32 0.0011 23.0 4.8 12 44-55 2-13 (36)
260 3m48_A General control protein 50.7 21 0.00072 23.5 3.9 12 44-55 1-12 (33)
261 1wlq_A Geminin; coiled-coil; 2 50.6 29 0.00098 27.0 5.3 34 85-118 34-67 (83)
262 2oto_A M protein; helical coil 50.4 1E+02 0.0035 25.1 12.7 38 40-77 26-63 (155)
263 2ve7_A Kinetochore protein HEC 50.1 34 0.0012 31.3 6.7 47 35-81 149-202 (315)
264 1gk6_A Vimentin; intermediate 50.0 65 0.0022 22.7 7.4 41 41-81 5-45 (59)
265 2qyw_A Vesicle transport throu 49.8 87 0.003 24.2 9.6 78 39-122 11-94 (102)
266 3cvf_A Homer-3, homer protein 49.7 84 0.0029 24.0 10.0 39 43-81 13-51 (79)
267 3ter_A Mammalian stromal inter 49.6 30 0.001 29.1 5.6 29 82-110 59-87 (136)
268 2zdi_C Prefoldin subunit alpha 49.6 75 0.0026 25.6 8.0 42 87-128 96-137 (151)
269 1t3j_A Mitofusin 1; coiled coi 49.5 92 0.0031 24.6 8.2 16 63-78 53-68 (96)
270 2dq3_A Seryl-tRNA synthetase; 49.4 21 0.00071 33.9 5.3 62 67-129 47-108 (425)
271 2dgc_A Protein (GCN4); basic d 49.4 26 0.00089 25.2 4.7 17 44-60 31-47 (63)
272 3mtu_E Head morphogenesis prot 49.3 87 0.003 24.0 7.9 46 61-109 27-75 (77)
273 2xv5_A Lamin-A/C; structural p 49.2 80 0.0027 23.5 8.0 34 48-81 3-36 (74)
274 4adz_A CSOR; transcription, co 49.1 1E+02 0.0036 25.7 8.9 43 38-81 51-93 (136)
275 1fmh_A General control protein 49.1 23 0.00079 22.9 3.8 21 59-79 10-30 (33)
276 2lf0_A Uncharacterized protein 49.0 36 0.0012 28.2 5.9 51 65-115 11-70 (123)
277 2zxx_A Geminin; coiled-coil, c 48.9 43 0.0015 25.7 6.0 25 86-110 31-55 (79)
278 1joc_A EEA1, early endosomal a 48.7 55 0.0019 26.1 7.0 28 39-66 7-34 (125)
279 4dac_A Computationally designe 48.6 13 0.00044 23.3 2.5 18 100-117 5-22 (28)
280 3okg_A Restriction endonucleas 48.6 29 0.001 30.5 5.8 16 111-126 392-407 (412)
281 2w6a_A ARF GTPase-activating p 48.4 80 0.0027 23.3 7.7 47 52-102 15-61 (63)
282 1bf5_A Signal transducer and a 48.3 1E+02 0.0034 31.2 10.2 33 40-72 13-45 (575)
283 1s94_A S-syntaxin; three helix 48.0 79 0.0027 25.9 8.1 19 41-59 41-59 (180)
284 1pl5_A Regulatory protein SIR4 47.9 33 0.0011 28.3 5.6 43 27-69 73-128 (142)
285 3he4_A Synzip6; heterodimeric 47.8 25 0.00084 25.1 4.2 27 91-117 26-52 (56)
286 2dq0_A Seryl-tRNA synthetase; 47.7 66 0.0023 30.9 8.6 32 99-130 72-103 (455)
287 3fpp_A Macrolide-specific effl 47.6 1E+02 0.0034 27.0 9.1 11 50-60 69-79 (341)
288 2zvf_A Alanyl-tRNA synthetase; 47.2 25 0.00085 28.4 4.8 30 86-115 29-58 (171)
289 1ytz_T Troponin T; muscle, THI 46.7 32 0.0011 27.5 5.3 36 41-76 54-89 (107)
290 3htk_A Structural maintenance 46.3 68 0.0023 21.9 8.4 24 86-109 30-53 (60)
291 2vrs_A Sigma-C capsid protein; 46.1 25 0.00085 31.5 4.9 30 87-116 9-38 (211)
292 3gp4_A Transcriptional regulat 46.1 1.1E+02 0.0039 24.4 9.2 11 27-37 43-53 (142)
293 3ni0_A Bone marrow stromal ant 46.0 1.1E+02 0.0039 24.4 11.2 66 48-117 23-88 (99)
294 1nyh_A Regulatory protein SIR4 45.9 40 0.0014 28.4 5.9 43 27-69 97-152 (166)
295 1zme_C Proline utilization tra 45.7 10 0.00036 26.2 2.0 22 40-61 48-69 (70)
296 2b5u_A Colicin E3; high resolu 45.7 1.8E+02 0.0061 29.3 11.3 41 41-81 312-352 (551)
297 1nlw_A MAD protein, MAX dimeri 45.7 55 0.0019 24.4 6.1 25 89-113 54-78 (80)
298 3k29_A Putative uncharacterize 45.6 1.5E+02 0.0051 25.7 13.0 73 52-124 80-157 (169)
299 1y1u_A Signal transducer and a 45.5 1.3E+02 0.0043 30.4 10.4 45 37-81 6-50 (585)
300 2k48_A Nucleoprotein; viral pr 45.5 1.2E+02 0.0041 24.5 8.6 24 66-89 37-63 (107)
301 1zbt_A RF-1, peptide chain rel 45.4 34 0.0012 32.8 6.0 24 100-123 91-115 (371)
302 2oxj_A Hybrid alpha/beta pepti 45.2 39 0.0013 22.3 4.5 17 86-102 12-28 (34)
303 2wq1_A General control protein 45.2 33 0.0011 22.6 4.1 12 44-55 1-12 (33)
304 3sjb_C Golgi to ER traffic pro 45.1 80 0.0027 24.9 7.2 19 41-59 21-39 (93)
305 1f5n_A Interferon-induced guan 45.1 1.3E+02 0.0043 30.1 10.3 15 102-116 566-580 (592)
306 3iox_A AGI/II, PA; alpha helix 45.0 2.5E+02 0.0084 28.0 15.1 53 45-97 29-81 (497)
307 3s9g_A Protein hexim1; cyclin 45.0 1.2E+02 0.0041 24.4 8.8 42 82-123 44-85 (104)
308 2c5k_T Syntaxin TLG1, T-snare 44.9 97 0.0033 23.9 7.6 22 60-81 39-60 (95)
309 2zdi_C Prefoldin subunit alpha 44.8 26 0.00089 28.4 4.6 38 41-78 103-140 (151)
310 1ses_A Seryl-tRNA synthetase; 44.8 80 0.0027 29.9 8.5 41 89-129 64-104 (421)
311 4fi5_A Nucleoprotein; structur 44.6 1.1E+02 0.0039 24.9 8.2 25 66-90 24-51 (113)
312 1no4_A Late, head morphogenesi 43.9 1.1E+02 0.0039 23.8 8.1 52 60-115 22-73 (97)
313 2ve7_A Kinetochore protein HEC 43.3 66 0.0023 29.4 7.5 24 47-70 182-205 (315)
314 3fx0_A NF-kappa-B essential mo 43.3 14 0.00047 29.5 2.5 55 49-107 37-94 (96)
315 3mx7_A FAS apoptotic inhibitor 43.3 5.5 0.00019 31.3 0.2 17 260-276 24-42 (90)
316 2p22_C Protein SRN2; endosome, 43.2 1.6E+02 0.0055 25.4 11.9 27 101-127 126-152 (192)
317 2wuj_A Septum site-determining 43.2 21 0.00071 25.2 3.3 27 85-111 30-56 (57)
318 2oto_A M protein; helical coil 43.2 1.3E+02 0.0045 24.4 11.8 17 41-57 34-50 (155)
319 3m0d_C TNF receptor-associated 43.1 89 0.003 22.4 9.1 16 63-78 5-20 (65)
320 4dci_A Uncharacterized protein 42.9 1.5E+02 0.0051 24.9 9.4 28 91-118 79-106 (150)
321 3g67_A Methyl-accepting chemot 42.9 1.7E+02 0.0057 25.4 12.6 29 86-114 50-78 (213)
322 1yke_B RNA polymerase II holoe 42.9 1.1E+02 0.0039 25.4 8.3 73 47-122 54-129 (151)
323 1ykh_B RNA polymerase II holoe 42.7 1.3E+02 0.0046 24.3 8.7 69 46-117 53-124 (132)
324 3cve_A Homer protein homolog 1 42.0 1.1E+02 0.0037 23.0 10.0 40 42-81 6-45 (72)
325 1t6f_A Geminin; coiled-coil, c 41.9 43 0.0015 22.5 4.4 19 53-71 10-28 (37)
326 3etw_A Adhesin A; antiparallel 41.9 1.4E+02 0.0048 24.3 9.8 20 39-58 5-24 (119)
327 1yvl_A Signal transducer and a 41.9 2E+02 0.0067 29.6 11.3 39 41-79 135-173 (683)
328 3hhm_B NISH2 P85alpha; PI3KCA, 41.5 79 0.0027 29.8 7.9 6 43-48 212-217 (373)
329 1g5g_A Fusion protein; NDV, pa 41.5 29 0.00098 34.4 5.0 76 30-115 96-173 (481)
330 2xzr_A Immunoglobulin-binding 41.1 1.4E+02 0.0048 24.1 12.6 79 40-118 17-105 (114)
331 2v0o_A FCHO2, FCH domain only 40.9 1.6E+02 0.0055 24.7 14.0 29 99-127 177-205 (276)
332 2yko_A LINE-1 ORF1P; RNA-bindi 40.8 53 0.0018 29.7 6.2 12 98-109 43-54 (233)
333 3qwe_A GMIP, GEM-interacting p 40.6 1.5E+02 0.0051 27.1 9.4 65 59-125 172-236 (279)
334 2j5u_A MREC protein; bacterial 40.6 14 0.00049 32.8 2.5 33 86-118 23-55 (255)
335 1j1d_B Troponin T, TNT; THIN f 40.2 35 0.0012 27.3 4.5 11 68-78 53-63 (106)
336 4gkw_A Spindle assembly abnorm 40.2 1.7E+02 0.0059 24.8 10.5 21 44-64 12-32 (167)
337 3tul_A Cell invasion protein S 40.2 1.3E+02 0.0044 25.8 8.2 24 58-81 70-93 (158)
338 1t6f_A Geminin; coiled-coil, c 40.0 68 0.0023 21.5 5.1 12 86-97 4-15 (37)
339 3ra3_B P2F; coiled coil domain 39.6 24 0.00082 22.1 2.7 21 53-73 3-23 (28)
340 1j1d_C Troponin I, TNI; THIN f 39.1 57 0.002 27.0 5.8 34 43-76 72-105 (133)
341 2dq3_A Seryl-tRNA synthetase; 39.0 59 0.002 30.8 6.6 28 101-128 73-100 (425)
342 3t98_B Nucleoporin NUP58/NUP45 39.0 1.3E+02 0.0046 23.2 8.1 71 42-112 11-81 (93)
343 4e61_A Protein BIM1; EB1-like 39.0 75 0.0026 25.6 6.2 28 53-80 7-34 (106)
344 3mtu_A Tropomyosin alpha-1 cha 38.9 1E+02 0.0036 22.7 6.7 18 82-99 37-54 (75)
345 2j69_A Bacterial dynamin-like 38.6 2.4E+02 0.0082 28.1 11.3 68 33-103 589-669 (695)
346 1uo4_A General control protein 38.4 45 0.0015 22.0 4.0 12 44-55 2-13 (34)
347 1urq_A M-tomosyn isoform; tran 38.1 1.1E+02 0.0038 22.0 8.1 41 40-80 8-48 (63)
348 3tq2_A KE1; parallel three hel 38.0 74 0.0025 20.9 5.0 31 45-75 3-33 (36)
349 1go4_E MAD1 (mitotic arrest de 37.8 1.5E+02 0.0052 23.5 8.0 31 51-81 13-43 (100)
350 3l4q_C Phosphatidylinositol 3- 37.7 1.9E+02 0.0067 24.7 10.6 63 36-109 96-158 (170)
351 2ve7_C Kinetochore protein NUF 37.7 20 0.00068 32.0 3.0 28 85-112 151-178 (250)
352 3qne_A Seryl-tRNA synthetase, 37.3 2.6E+02 0.0088 27.4 11.0 31 99-129 74-104 (485)
353 2wvr_A Geminin; DNA replicatio 37.3 1.1E+02 0.0037 27.3 7.6 19 84-102 110-128 (209)
354 2yo3_A General control protein 37.1 1.5E+02 0.005 27.4 8.6 39 43-81 216-254 (268)
355 3a5t_A Transcription factor MA 37.0 2.3 8E-05 34.3 -2.9 21 10-30 4-24 (107)
356 1bf5_A Signal transducer and a 37.0 2.2E+02 0.0074 28.8 10.6 38 44-81 3-40 (575)
357 4ad8_A DNA repair protein RECN 36.9 80 0.0027 29.9 7.2 9 25-33 162-170 (517)
358 2rr9_C Putative uncharacterize 36.4 86 0.0029 21.8 5.3 10 27-36 4-13 (46)
359 2d4y_A HAP1, flagellar HOOK-as 36.3 1.1E+02 0.0037 28.9 8.0 59 55-116 65-123 (463)
360 2zuo_A MVP, major vault protei 36.2 4.2E+02 0.014 28.1 15.9 41 90-130 758-806 (861)
361 3swy_A Cyclic nucleotide-gated 36.0 80 0.0027 21.9 5.2 17 43-59 5-21 (46)
362 3lay_A Zinc resistance-associa 35.8 1.1E+02 0.0038 26.1 7.3 8 55-62 90-97 (175)
363 3ra3_A P1C; coiled coil domain 35.4 25 0.00085 22.0 2.3 24 93-116 4-27 (28)
364 2y7c_A Type-1 restriction enzy 35.3 1.6E+02 0.0053 26.2 8.5 22 14-36 360-385 (464)
365 2p22_A Suppressor protein STP2 35.2 2.1E+02 0.0073 24.5 10.5 46 72-117 39-84 (174)
366 3ok8_A Brain-specific angiogen 35.0 2.4E+02 0.0083 25.0 11.9 34 30-66 54-87 (222)
367 1fzc_B Fibrin; blood coagulati 34.4 19 0.00066 33.5 2.4 10 244-253 268-277 (328)
368 3c3f_A Alpha/beta peptide with 34.3 61 0.0021 21.4 4.1 10 44-53 2-11 (34)
369 1qvr_A CLPB protein; coiled co 34.3 1.7E+02 0.0057 29.6 9.4 6 201-206 596-601 (854)
370 4g63_A Cytosolic IMP-GMP speci 34.3 30 0.001 33.8 3.9 10 46-55 325-334 (470)
371 2ic6_A Nucleocapsid protein; h 34.2 1.6E+02 0.0053 22.6 8.2 25 66-90 7-34 (78)
372 2y7c_A Type-1 restriction enzy 34.1 68 0.0023 28.5 5.9 21 106-126 184-204 (464)
373 2xus_A Breast cancer metastasi 34.0 63 0.0022 22.8 4.5 17 44-60 14-30 (49)
374 3rrr_B Fusion glycoprotein F0; 33.8 2.2E+02 0.0076 27.3 9.7 62 44-115 10-71 (374)
375 3tso_C RAB11 family-interactin 33.6 68 0.0023 24.5 4.9 30 48-77 19-48 (75)
376 2ic9_A Nucleocapsid protein; h 33.6 1.8E+02 0.0061 23.1 8.2 25 66-90 7-34 (96)
377 4ani_A Protein GRPE; chaperone 33.5 2.5E+02 0.0085 24.7 10.4 13 116-128 143-155 (213)
378 1lj2_A NSP3-C, nonstructural R 33.2 1.9E+02 0.0066 23.4 9.6 70 58-127 7-102 (110)
379 3jsv_C NF-kappa-B essential mo 33.2 1.6E+02 0.0055 23.2 7.2 8 63-70 22-29 (94)
380 1zvu_A Topoisomerase IV subuni 32.8 4.4E+02 0.015 27.3 12.8 42 88-129 401-442 (716)
381 1nkp_B MAX protein, MYC proto- 32.7 61 0.0021 23.8 4.5 29 87-115 52-80 (83)
382 2inr_A DNA topoisomerase 4 sub 32.1 3.7E+02 0.013 26.7 11.2 42 88-129 453-494 (514)
383 3ck6_A Putative membrane trans 32.0 2E+02 0.007 24.1 8.4 17 65-81 172-188 (252)
384 2iub_A CORA, divalent cation t 31.7 2.5E+02 0.0085 25.4 9.4 43 39-81 191-238 (363)
385 3a1q_C Ubiquitin interaction m 31.5 1.2E+02 0.004 21.0 5.3 10 27-36 7-16 (45)
386 2gkw_A TNF receptor-associated 31.4 57 0.002 27.1 4.7 13 68-80 4-16 (192)
387 1avy_A Fibritin, gpwac M; bact 31.4 93 0.0032 23.7 5.3 17 44-60 9-25 (74)
388 2qm4_A Non-homologous END-join 31.4 47 0.0016 29.7 4.3 39 32-71 133-171 (235)
389 3rkg_A Magnesium transporter M 31.3 1.7E+02 0.0058 26.4 8.1 29 103-131 171-199 (261)
390 2a01_A Apolipoprotein A-I; fou 31.3 2.6E+02 0.0089 24.3 9.7 20 65-84 155-174 (243)
391 1fxk_A Prefoldin; archaeal pro 31.3 1.6E+02 0.0054 21.8 11.8 27 44-70 9-35 (107)
392 1yvl_A Signal transducer and a 31.1 2.9E+02 0.0099 28.4 10.6 43 28-72 138-180 (683)
393 4b9q_A Chaperone protein DNAK; 31.0 3.2E+02 0.011 26.6 10.5 20 61-80 524-543 (605)
394 3t97_B Nuclear pore complex pr 30.9 1.1E+02 0.0038 22.6 5.6 36 42-77 9-44 (65)
395 2p2u_A HOST-nuclease inhibitor 30.9 2.3E+02 0.0077 23.7 8.3 8 27-34 15-22 (171)
396 1ez3_A Syntaxin-1A; three heli 30.8 1.7E+02 0.006 22.1 10.9 24 50-73 12-35 (127)
397 3viq_A SWI5-dependent recombin 30.2 65 0.0022 26.1 4.7 7 71-77 14-20 (122)
398 2p2u_A HOST-nuclease inhibitor 30.1 2.4E+02 0.0083 23.5 9.1 17 64-80 23-39 (171)
399 1nkp_A C-MYC, MYC proto-oncoge 29.9 1.6E+02 0.0056 22.1 6.6 15 44-58 17-31 (88)
400 1ni7_A ER75, hypothetical prot 29.8 8.7 0.0003 32.4 -0.7 51 11-65 100-150 (155)
401 1ses_A Seryl-tRNA synthetase; 29.6 3.6E+02 0.012 25.4 12.0 36 96-131 64-99 (421)
402 2er8_A Regulatory protein Leu3 29.6 49 0.0017 22.9 3.4 18 64-81 49-66 (72)
403 1wlo_A SUFE protein; structura 29.6 28 0.00095 28.5 2.4 46 11-61 87-132 (136)
404 3q4f_C DNA repair protein XRCC 29.4 72 0.0025 28.0 5.1 22 82-103 161-182 (186)
405 3onj_A T-snare VTI1; helix, HA 29.3 1.9E+02 0.0064 22.0 10.4 52 61-116 31-86 (97)
406 3i00_A HIP-I, huntingtin-inter 29.3 2.2E+02 0.0076 22.9 10.2 22 60-81 11-32 (120)
407 2ycu_A Non muscle myosin 2C, a 29.3 2.6E+02 0.009 29.5 10.2 54 67-120 914-973 (995)
408 3r2p_A Apolipoprotein A-I; amp 29.1 2.3E+02 0.0077 23.5 8.0 71 45-123 73-143 (185)
409 3cl3_D NF-kappa-B essential mo 29.0 22 0.00074 29.7 1.6 23 91-113 75-100 (130)
410 1j1e_C Troponin I, TNI; THIN f 28.7 98 0.0034 26.9 5.8 38 41-78 70-107 (180)
411 4ev6_A Magnesium transport pro 28.5 2.6E+02 0.0087 25.0 8.8 41 41-81 169-214 (339)
412 1hx1_B BAG-1, BAG-family molec 28.3 88 0.003 25.5 5.1 76 39-127 21-96 (114)
413 3swk_A Vimentin; cytoskeleton, 28.2 1.9E+02 0.0066 21.7 9.4 17 98-114 44-60 (86)
414 3fav_B ESAT-6, 6 kDa early sec 28.1 1.6E+02 0.0055 20.9 7.4 25 52-76 14-38 (94)
415 3k8w_A Flagellin homolog; flag 27.9 3.8E+02 0.013 25.1 10.9 45 26-70 8-56 (326)
416 1joc_A EEA1, early endosomal a 27.8 2.3E+02 0.0077 22.4 9.3 13 65-77 19-31 (125)
417 2yko_A LINE-1 ORF1P; RNA-bindi 27.7 99 0.0034 27.9 5.8 38 41-78 4-41 (233)
418 2wg5_A General control protein 27.4 58 0.002 25.4 3.8 23 87-109 12-34 (109)
419 2oa5_A Hypothetical protein BQ 27.4 1.2E+02 0.0041 24.6 5.7 20 41-60 13-32 (110)
420 1bg1_A Protein (transcription 27.3 1.3E+02 0.0044 30.6 7.1 44 27-72 13-56 (596)
421 1lrz_A FEMA, factor essential 27.3 1.8E+02 0.006 26.9 7.6 16 65-80 248-263 (426)
422 3zbh_A ESXA; unknown function, 27.2 1.7E+02 0.0057 20.7 10.2 7 68-74 34-40 (99)
423 3c3g_A Alpha/beta peptide with 27.2 96 0.0033 20.3 4.1 6 45-50 2-7 (33)
424 1zhc_A Hypothetical protein HP 27.1 42 0.0014 24.9 2.8 28 50-77 17-44 (76)
425 1fxk_A Prefoldin; archaeal pro 27.1 1.9E+02 0.0065 21.3 11.4 29 41-69 13-41 (107)
426 4egx_A Kinesin-like protein KI 26.9 1.8E+02 0.006 24.6 7.0 19 53-71 8-26 (184)
427 3s84_A Apolipoprotein A-IV; fo 26.9 3.4E+02 0.012 24.2 12.2 34 48-81 42-83 (273)
428 1wj7_A Hypothetical protein (R 26.8 45 0.0015 26.7 3.1 13 25-37 20-32 (104)
429 3lss_A Seryl-tRNA synthetase; 26.8 4.4E+02 0.015 25.7 10.6 35 97-131 100-139 (484)
430 2wt7_B Transcription factor MA 26.8 91 0.0031 24.3 4.7 21 88-108 61-81 (90)
431 2d1l_A Metastasis suppressor p 26.7 3.5E+02 0.012 24.3 12.4 50 30-81 58-108 (253)
432 1rtm_1 Mannose-binding protein 26.7 38 0.0013 26.2 2.6 19 41-59 2-20 (149)
433 3teq_A Stromal interaction mol 26.7 2E+02 0.0069 22.9 6.8 28 82-109 28-55 (101)
434 2dnx_A Syntaxin-12; snare, HAB 26.5 2.4E+02 0.0082 22.3 9.5 21 38-58 16-36 (130)
435 4e8u_A Putative uncharacterize 26.5 57 0.002 28.1 3.9 22 52-73 150-171 (172)
436 1flk_A TNF receptor associated 26.3 60 0.0021 27.8 4.1 7 114-120 81-87 (228)
437 3hd7_A Vesicle-associated memb 26.2 2.1E+02 0.0072 21.5 9.3 67 44-122 6-72 (91)
438 3frt_A Charged multivesicular 26.2 90 0.0031 27.5 5.2 19 105-123 56-74 (218)
439 3gpv_A Transcriptional regulat 25.7 2.6E+02 0.0087 22.4 8.0 11 27-37 57-67 (148)
440 1gl2_A Endobrevin; membrane pr 25.7 1.8E+02 0.0061 20.6 7.2 17 43-59 9-25 (65)
441 4aj5_K Spindle and kinetochore 25.6 2.8E+02 0.0097 22.8 8.7 27 47-73 2-28 (123)
442 3w03_C DNA repair protein XRCC 25.5 1.5E+02 0.005 25.8 6.3 25 83-107 153-177 (184)
443 1lrz_A FEMA, factor essential 25.4 1.7E+02 0.0058 27.0 7.2 55 59-118 249-303 (426)
444 2zqm_A Prefoldin beta subunit 25.3 2.1E+02 0.0073 21.3 12.7 32 39-70 16-47 (117)
445 2i1j_A Moesin; FERM, coiled-co 25.3 68 0.0023 31.7 4.7 60 66-125 337-399 (575)
446 1tu3_F RAB GTPase binding effe 25.0 39 0.0013 26.0 2.3 31 90-120 6-36 (79)
447 4b4t_M 26S protease regulatory 24.9 66 0.0023 30.8 4.4 40 68-111 29-68 (434)
448 4f61_I Stathmin-like domain R4 24.9 2.3E+02 0.008 25.7 7.7 26 49-74 110-135 (240)
449 2nps_A VAMP-4, vesicle-associa 24.8 2E+02 0.0068 20.8 7.5 55 44-111 9-65 (74)
450 3rki_A Fusion glycoprotein F0; 24.8 3.7E+02 0.013 27.0 9.7 46 36-81 139-184 (528)
451 3nr7_A DNA-binding protein H-N 24.7 2.3E+02 0.008 21.6 7.2 20 46-65 27-46 (86)
452 3f31_A Spectrin alpha chain, b 24.6 2.5E+02 0.0086 21.9 9.6 61 45-105 48-122 (149)
453 2w83_C C-JUN-amino-terminal ki 24.6 2.4E+02 0.0081 21.6 8.8 48 33-80 27-74 (77)
454 2fic_A Bridging integrator 1; 24.5 2.1E+02 0.0072 24.1 7.1 60 52-115 32-99 (251)
455 1fio_A SSO1 protein; four heli 24.5 2.8E+02 0.0096 22.4 9.4 10 41-50 21-30 (196)
456 3b5n_A Synaptobrevin homolog 1 24.4 1.8E+02 0.0062 20.2 9.0 30 82-111 30-59 (61)
457 3o6x_A Glutamine synthetase; t 24.3 4.6E+02 0.016 27.2 10.6 20 99-118 692-711 (729)
458 4ani_A Protein GRPE; chaperone 24.1 2.6E+02 0.0088 24.6 7.7 30 52-81 61-90 (213)
459 2xkj_E Topoisomerase IV; type 24.1 3.5E+02 0.012 28.2 9.8 43 89-131 696-738 (767)
460 1s94_A S-syntaxin; three helix 24.1 2.9E+02 0.0099 22.4 8.9 20 50-69 43-62 (180)
461 1gs9_A Apolipoprotein E, APOE4 23.9 2.7E+02 0.0093 23.2 7.5 70 45-123 90-160 (165)
462 4hpq_C ATG17, KLTH0D15642P; au 23.9 4.9E+02 0.017 25.0 11.6 59 53-115 311-369 (413)
463 3e98_A GAF domain of unknown f 23.8 3.1E+02 0.011 24.1 8.3 17 64-80 96-112 (252)
464 2vs0_A Virulence factor ESXA; 23.8 1.9E+02 0.0066 20.3 9.4 24 54-77 17-40 (97)
465 3u0c_A Invasin IPAB, 62 kDa an 23.6 3.7E+02 0.013 23.6 10.8 29 45-73 70-98 (201)
466 1a92_A Delta antigen; leucine 23.6 1.5E+02 0.005 21.1 4.8 28 70-101 13-40 (50)
467 2l3l_A Tubulin-specific chaper 23.5 2E+02 0.0069 22.7 6.3 61 40-100 39-102 (111)
468 3kin_B Kinesin heavy chain; mo 23.5 1.2E+02 0.0042 23.9 5.1 48 34-81 58-113 (117)
469 3a2a_A Voltage-gated hydrogen 23.3 2.2E+02 0.0075 20.7 6.2 9 49-57 10-18 (58)
470 2l5g_B Putative uncharacterize 23.1 1.9E+02 0.0064 19.9 5.4 13 65-77 24-36 (42)
471 1a93_B MAX protein, coiled coi 23.1 1.5E+02 0.0053 19.4 4.6 19 89-107 14-32 (34)
472 4ew8_A Sensor protein DIVL; si 23.0 1.9E+02 0.0064 23.4 6.3 81 41-124 15-98 (268)
473 3onj_A T-snare VTI1; helix, HA 23.0 2.5E+02 0.0085 21.3 11.9 20 57-76 41-60 (97)
474 1wt6_A Myotonin-protein kinase 23.0 2.6E+02 0.009 21.5 7.9 38 74-111 17-60 (81)
475 4etp_B Spindle POLE BODY-assoc 22.9 2.8E+02 0.0097 26.2 8.1 49 58-110 11-59 (333)
476 3ni0_A Bone marrow stromal ant 22.8 2.9E+02 0.01 22.0 7.4 30 52-81 48-84 (99)
477 3s84_A Apolipoprotein A-IV; fo 22.7 4.1E+02 0.014 23.7 13.5 15 67-81 113-127 (273)
478 4efa_E V-type proton ATPase su 22.6 3.6E+02 0.012 22.9 14.4 28 99-126 101-129 (233)
479 1hs7_A Syntaxin VAM3; UP-and-D 22.4 2.8E+02 0.0095 21.6 6.9 55 54-117 37-92 (97)
480 4gkw_A Spindle assembly abnorm 22.2 3.6E+02 0.012 22.9 10.2 8 109-116 73-80 (167)
481 3rrk_A V-type ATPase 116 kDa s 22.2 3.4E+02 0.012 24.1 8.3 11 114-124 160-170 (357)
482 3rkg_A Magnesium transporter M 22.2 4.3E+02 0.015 23.7 10.6 36 25-60 121-158 (261)
483 2b9c_A Striated-muscle alpha t 22.1 3.3E+02 0.011 22.4 14.6 90 28-117 24-122 (147)
484 3auy_A DNA double-strand break 22.0 4.2E+02 0.015 23.6 9.6 13 25-37 144-156 (371)
485 2l7b_A Apolipoprotein E, APO-E 21.9 2.2E+02 0.0075 26.1 7.1 9 115-123 182-190 (307)
486 2xcs_B DNA gyrase subunit B, D 21.8 6.7E+02 0.023 25.8 12.6 42 88-129 636-677 (692)
487 1m1j_A Fibrinogen alpha subuni 21.6 4.4E+02 0.015 26.2 9.5 17 115-131 179-195 (491)
488 2nrj_A HBL B protein; enteroto 21.6 4.3E+02 0.015 24.3 9.1 66 43-112 226-294 (346)
489 2yfa_A MCPS, methyl-accepting 21.5 3.4E+02 0.012 22.3 10.3 69 43-116 178-247 (258)
490 3gpv_A Transcriptional regulat 21.4 2.3E+02 0.0078 22.7 6.4 17 94-110 107-123 (148)
491 1j1d_B Troponin T, TNT; THIN f 21.4 3.1E+02 0.011 21.7 9.1 39 77-115 44-82 (106)
492 2bnx_A Diaphanous protein homo 21.4 13 0.00044 34.8 -1.3 51 44-94 334-384 (386)
493 3iox_A AGI/II, PA; alpha helix 21.3 6.2E+02 0.021 25.2 12.2 74 49-122 8-82 (497)
494 2kho_A Heat shock protein 70; 21.3 4E+02 0.014 25.9 9.2 78 49-128 509-597 (605)
495 4i0x_B ESAT-6-like protein MAB 21.3 2.5E+02 0.0086 20.7 9.7 84 34-117 9-95 (103)
496 3q0x_A Centriole protein; cent 21.2 4.3E+02 0.015 23.5 8.6 53 41-97 169-221 (228)
497 2de0_X Alpha-(1,6)-fucosyltran 21.2 5.8E+02 0.02 24.9 10.4 77 31-107 51-131 (526)
498 1nlw_A MAD protein, MAX dimeri 21.1 2.1E+02 0.0072 21.2 5.7 39 59-101 42-80 (80)
499 2p01_A Alpha-2-macroglobulin r 21.0 4.4E+02 0.015 24.9 9.0 73 49-123 237-315 (323)
500 3haj_A Human pacsin2 F-BAR; pa 21.0 3.8E+02 0.013 25.3 8.8 82 47-128 133-217 (486)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.00 E-value=0.019 Score=46.95 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=22.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+|..+|..|+.++..+..++.+-...+..|+.++..++..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 44 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELV 44 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555555555555555555554444443
No 2
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.98 E-value=0.01 Score=49.42 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=58.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
++.=|+.-.-++..++..|++++.+++..|++|...+..+...+- .+.+++.+|.+|++.|...+++|...
T Consensus 62 aALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e----~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 62 MYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE----SSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355577777788889999999999999999999988887775554 88888888888888888888888643
No 3
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=96.84 E-value=0.025 Score=44.56 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=63.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
.+.-|+..+|.++..+.+....++..|..|+.|+..+|..|- .+|..+.+....-.+-...-...|..|||-+.-||
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456688888999999999999999999999999999999987 66776666665555556666678999999888776
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.67 E-value=0.018 Score=61.15 Aligned_cols=80 Identities=18% Similarity=0.318 Sum_probs=38.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (278)
...+|..||.|+..|+.++.+-..+..+|++++..+...|+.++....+++.+|.++.+.|...+.+.+.+.+ |.+|.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~--~~~~~ 1059 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEK 1059 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3345555555555555555555555555555555555545444444444444444444444444444433222 23555
Q ss_pred HH
Q 023690 121 TL 122 (278)
Q Consensus 121 ~L 122 (278)
.+
T Consensus 1060 ~~ 1061 (1080)
T 2dfs_A 1060 KL 1061 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 5
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.048 Score=46.74 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=57.4
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHH
Q 023690 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT-VRKLQRDVSKL 115 (278)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T-vKkL~rDvaKL 115 (278)
+-..+..-...|+.+|..|...|.+|...+..|++-+..|..++. .+.+...+|++||+.|... +++-+++-.+|
T Consensus 69 ~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n----~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~M 144 (152)
T 3a7p_A 69 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN----VLQQKLSDLKKEHSQLVARWLKKTEKETEAM 144 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777888888888888888888888888887776 8899999999999988764 45566665554
No 6
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.30 E-value=0.12 Score=40.31 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=62.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
.+.-|+..+|.++..+.+....++..|..|+.|+..++..|- .+|..+.+....-.+....-...|..|||-+.-||
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 455678888889999999999999999999999999999887 66776666666556666666778999999887665
No 7
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.97 E-value=0.098 Score=40.31 Aligned_cols=70 Identities=20% Similarity=0.269 Sum_probs=60.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
-+..++.|+..|+..|..-.....+|+.++..|..+.. ..|..+.+.+.+|.+.+..|...++.|+..|.
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35578999999999999888899999999988887766 44889999999999999999999999987653
No 8
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=95.87 E-value=0.12 Score=42.13 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 49 ESEHSALRSQLAEKDS---RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~---~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
..+|..|++.++.++. .|.-|+.++.-....+. .=..+-++|+.|+..|...+..|++++.+|+
T Consensus 44 q~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~----aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 3566677776666665 45555555555444443 5556678999999999999999999998874
No 9
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.68 E-value=0.011 Score=62.71 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
..+||.++..|..+|.++.+...+|++++..++..+. ..|+..+++.+++.+|+..+.+.|+.|..++++|
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777776666666666555444443 3444444444444444444444444444444433
No 10
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=95.58 E-value=0.091 Score=45.59 Aligned_cols=79 Identities=20% Similarity=0.397 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH---
Q 023690 47 DLESEHSALRSQLA-EK------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE--- 116 (278)
Q Consensus 47 ~LE~E~~~LR~~La-EK------d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE--- 116 (278)
.||.|+..|..+|. || .+.|.+|+.|+..|+.+|. ...+...++..||..|..-|-.|.+.-+-||
T Consensus 66 ~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~----~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~ 141 (168)
T 3o0z_A 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVK----HLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDL 141 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 45666666766666 55 3567888889988888886 3333334444444444444444444444444
Q ss_pred HHH-HHHHhhcccc
Q 023690 117 VFR-KTLVQSLKDD 129 (278)
Q Consensus 117 ~FK-k~LmqSLq~d 129 (278)
+|| |+|=++++-+
T Consensus 142 ~~eLKalQ~~~eqE 155 (168)
T 3o0z_A 142 NYKLKSLQQRLEQE 155 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 343 4444444433
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.31 E-value=0.43 Score=38.68 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
+.+..+.+.+.+|...+..|...++-|+.++..
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555544443
No 12
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=95.27 E-value=0.098 Score=40.38 Aligned_cols=56 Identities=25% Similarity=0.395 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~Tv 105 (278)
+.||+|...+-++|.+-.....+|+++|..|+..|. .+..+...+..|-..|..++
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~l~e~L 57 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLE----EARAERERARAEVGRAAQLL 57 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999998887 77777777777766666553
No 13
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=95.21 E-value=0.36 Score=40.57 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=69.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
+++.--|+..||.++...+....+.|+...+...|+.-++..|. .|+..+...+..|..|...+.+++|.|...-.
T Consensus 47 ~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~ee 125 (147)
T 2b9c_A 47 AQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKVE 125 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 66778899999999999999999999999999999999999999 99999999999999999999999999875543
No 14
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=95.17 E-value=0.13 Score=39.35 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=43.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
-+.|+.-+..||..|.+||.+|..|++.+.---.. .....+|..-|.=||+-|.+.+.+|.
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd----~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKN----TERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 34566678999999999999999999776532222 23567788888888888877666554
No 15
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.74 E-value=0.51 Score=41.49 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
..+...|.+++..|...+++|...-.-||+=.|.+.-||.|
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 33344444555555555555555555555555555555544
No 16
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.68 E-value=0.2 Score=47.73 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
++.++|.+.-+.-..+++.|.+++++++.=.|+|++-+++.
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~ 584 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRN 584 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34444444444444467777777777766667777766554
No 17
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.68 E-value=0.8 Score=39.03 Aligned_cols=79 Identities=22% Similarity=0.273 Sum_probs=58.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
...+..|...+|.+|..|..+|.|-+.....-+..|..|+..+- ++|......+..+..|-+..-+.+..+.-++-.
T Consensus 65 eekasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~ 144 (155)
T 2efr_A 65 AEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYH 144 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHH
Confidence 55667889999999999999999998888888888888887776 667777777777777777655555554444444
Q ss_pred HH
Q 023690 115 LE 116 (278)
Q Consensus 115 LE 116 (278)
|+
T Consensus 145 ~~ 146 (155)
T 2efr_A 145 LE 146 (155)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 18
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.62 E-value=0.68 Score=37.51 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=45.9
Q ss_pred HHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 41 ISTRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~La-------EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
+-.+...|+.|...|..+|. +++.....|..+-..|+..|. .||..-.+.+..|..++..|...+..|..
T Consensus 39 le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666665554 344444444444455555555 66666666677777777777777777777
Q ss_pred hHHHHH
Q 023690 111 DVSKLE 116 (278)
Q Consensus 111 DvaKLE 116 (278)
|+.-||
T Consensus 119 ~led~e 124 (129)
T 2fxo_A 119 DIDDLE 124 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666665
No 19
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=94.22 E-value=0.033 Score=51.02 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=27.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEK---DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEK---d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+..|..|+.|+..||.+|.+- .+.... ++|+..|+.++. .....|.+|..+...|...+.+|..+|.+|
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~----~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARID----SLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------------C-CHHHHHHHHHHH----HHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566677888888888888654 444333 455555555554 555566667777777777777777776665
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=94.01 E-value=0.36 Score=39.55 Aligned_cols=53 Identities=26% Similarity=0.293 Sum_probs=34.8
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQ----LAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA 100 (278)
Q Consensus 48 LE~E~~~LR~~----LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~ 100 (278)
|-.|+.+||.. ..|-.+.|.+|+.+|+.||.+|. .-...|..+|..|..|...
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 45889999999999999999998 2233445555555555443
No 21
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=94.01 E-value=0.2 Score=38.20 Aligned_cols=46 Identities=20% Similarity=0.184 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (278)
+..|+..|.+|++.|...++++..||..|+ +.++++.+|+.|-|.+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~----ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELD----QKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 556666666666666666666666665554 5555555555555443
No 22
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.98 E-value=0.35 Score=51.27 Aligned_cols=75 Identities=11% Similarity=0.235 Sum_probs=45.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
++..|+.++..|+.+|..-+..+.+|++++..|+.++. ..+..+.++..+|..++..|...++.|..++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777777666666666666666666555444 34444555666666666666666666666655
Q ss_pred HHHHH
Q 023690 114 KLEVF 118 (278)
Q Consensus 114 KLE~F 118 (278)
.++.-
T Consensus 938 e~ee~ 942 (1184)
T 1i84_S 938 EEEER 942 (1184)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 54443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.89 E-value=0.68 Score=44.03 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 023690 92 ERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDva 113 (278)
.+|.+|+..|...+++-...+.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHH
Confidence 3344555555554444444443
No 24
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.71 E-value=1.3 Score=35.99 Aligned_cols=61 Identities=11% Similarity=0.213 Sum_probs=40.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKD----SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd----~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~ 99 (278)
..+..++..|+.|+..+|.++..-. ..|..||+.+..|-..-. .+|+...+.|..|.....
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 3577889999999999998887543 346666666666554444 555555555555555443
No 25
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=93.56 E-value=1.4 Score=33.01 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=22.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
||..|+..|+.|......++.+-...+.+.+.+...+|..+.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~ 44 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELV 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 456666666666655555555555445555544444444443
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=93.55 E-value=0.83 Score=37.91 Aligned_cols=63 Identities=22% Similarity=0.243 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
|.-.++.+..+-.+.+.++.+.+..|- ..|..+..++..+.+|+..|...+..|.+.+.+||+
T Consensus 69 El~k~~~~~~~L~~~l~~~~kE~~~lK----~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 69 DYFKAKKMADSLSLDIENKDKEIYDLK----HELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333 455588889999999999999999999999999985
No 27
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=93.47 E-value=0.82 Score=36.40 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 48 LESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd---~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
...+|..|++.++.+. ..|.-|+.++.-....+. .=+.+-++|..|+..|...+..|.+++.+|..
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~----aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888777666 566777777776666665 55667789999999999999999999999854
No 28
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=93.43 E-value=2 Score=39.95 Aligned_cols=63 Identities=16% Similarity=0.282 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
|+++|.|=..-..+++.+.++....+-....-.+.+..+-++....|.+.|++||..|..+++
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 402 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555544443332111111222233334566777888888877766554
No 29
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=93.41 E-value=0.69 Score=35.25 Aligned_cols=59 Identities=25% Similarity=0.352 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
+-..|-.+|.+|+++|..|.-=+.+|- +||-.-.+-+.||+.+...+..-+..|++|+.
T Consensus 4 QNKeL~~kl~~Kq~EI~rLnvlvgslR----~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 4 QNKELNFKLREKQNEIFELKKIAETLR----SKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 345788999999999988876555554 66668899999999999999999988888764
No 30
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=93.27 E-value=1.6 Score=38.45 Aligned_cols=82 Identities=9% Similarity=0.127 Sum_probs=50.5
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (278)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (278)
++-|-=+|-..|. .+..|+..||.++..+-.++.++...+.+++.++..++..|...-....+....+.+|...|...
T Consensus 88 ~~kE~~aL~kEie--~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 88 SERELRSLNIEED--IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp SSSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445556665 44578888888888888888888888888888888777777633333333334444444444333
Q ss_pred HHHH
Q 023690 105 VRKL 108 (278)
Q Consensus 105 vKkL 108 (278)
-..|
T Consensus 166 r~~l 169 (256)
T 3na7_A 166 KEDL 169 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 31
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=93.17 E-value=1.7 Score=33.74 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=46.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
.|--||-.||.+-..|-.++.+-.. ...+.+...+..-+..+......+..||..|...+..|..++..|+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~------~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKG------QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999998888766543211 1223333333344556677777777888888888888777776553
No 32
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=93.14 E-value=1.7 Score=33.51 Aligned_cols=32 Identities=22% Similarity=0.514 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
...++.++..|+....+-...|.+|+..+..|
T Consensus 12 ~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l 43 (112)
T 1l8d_A 12 KTTIEEERNEITQRIGELKNKIGDLKTAIEEL 43 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444444
No 33
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=93.05 E-value=1.8 Score=34.85 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=11.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLA 60 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~La 60 (278)
-+...|+.|+.|+..|+.+-+
T Consensus 40 elrr~iq~L~~el~~l~~~~~ 60 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCA 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 344556666666666655443
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.76 E-value=1.8 Score=38.14 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 99 EALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
..+...+..+..+++.|..=+..|...|
T Consensus 146 ~~~~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 146 SLVENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444455555555445555544
No 35
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.73 E-value=0.65 Score=54.74 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=52.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNT 104 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-----------------~rL~~a~ee~~kL~~E~~~La~T 104 (278)
..++.++|.+....+++|.++.+.+++|++++..|+.++. .||..|..=...|..|+..=..+
T Consensus 2013 r~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A 2013 REEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence 3567777777777788888888888888777777776655 34445555556677888777777
Q ss_pred HHHHhhhHHHH
Q 023690 105 VRKLQRDVSKL 115 (278)
Q Consensus 105 vKkL~rDvaKL 115 (278)
++.|..+...|
T Consensus 2093 ~~~l~~~~~~L 2103 (3245)
T 3vkg_A 2093 SENFNTQMSTV 2103 (3245)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 77777666554
No 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=92.51 E-value=0.91 Score=48.19 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=5.7
Q ss_pred hhhhHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQL 59 (278)
Q Consensus 45 Vs~LE~E~~~LR~~L 59 (278)
+..|+.++..|+.+|
T Consensus 887 l~~Le~e~~~l~~~L 901 (1184)
T 1i84_S 887 HTQLCEEKNLLQEKL 901 (1184)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 37
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.34 E-value=2.1 Score=37.55 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=35.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSR----IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~----i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
.+..++..|..|+..+|.++..=... |..||+.+..|..... .+|+...+.|..|......+..++.
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 34555666666666666555433222 5555555555554444 5555555555555555554444443
No 38
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=92.29 E-value=0.44 Score=42.13 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|++|-+|...|+++|..|+.+|..|++++.+|+.+..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999999999999999987664
No 39
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.19 E-value=1.7 Score=35.17 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=12.0
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLA 60 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~La 60 (278)
+...|+.|+.|+..|+.+-+
T Consensus 43 lrr~iq~L~~el~~l~~~~~ 62 (131)
T 3tnu_A 43 LRRTMQNLEIELQSQLSMKA 62 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHH
Confidence 44566667777666655443
No 40
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=91.81 E-value=1.9 Score=34.44 Aligned_cols=87 Identities=13% Similarity=0.246 Sum_probs=63.8
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAEL---QSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (278)
Q Consensus 26 P~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~L---q~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La 102 (278)
|.|||.++..-+..|....+.....|...-+.+|..-...+.+= +.|.-.=+.++-++|..+.-...|=++.++.|.
T Consensus 5 P~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~ 84 (98)
T 4fm3_A 5 PLEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELD 84 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999989888888888655555321 111111122233777788888888888888888
Q ss_pred HHHHHHhhhH
Q 023690 103 NTVRKLQRDV 112 (278)
Q Consensus 103 ~TvKkL~rDv 112 (278)
..|..|..++
T Consensus 85 ~~I~~LrqEl 94 (98)
T 4fm3_A 85 KSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8777776655
No 41
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=91.75 E-value=0.55 Score=35.73 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=29.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
-|-.|+..+..-..+|..||..|.+|++++...|..++
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777788888888888888888887776
No 42
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=91.66 E-value=3.5 Score=33.48 Aligned_cols=79 Identities=19% Similarity=0.272 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
..+.|+.+..-=...+.+++.|+.....+.........++..+|..+++.|..-++.|...-.-||.=.|...-||.|=
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 3455555555555555666666665555444444566677788888888888888888888888888888888887653
No 43
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=91.64 E-value=0.37 Score=36.18 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 60 aEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.-|+.+|.+|+.+|..|+.... .|..||..|-..|..|..++..|
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~-----------~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHS-----------STTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 4588999999999887776443 46677777777777777665543
No 44
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=91.31 E-value=2 Score=42.96 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
+|-.+||+.+.++...|..++.-++++...+. ...+.|.+..+.+.+|+..+.+.+-.++..++
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiA 415 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 57789999999999999999999999988888 77788999999999999999888877777654
No 45
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=90.83 E-value=3.2 Score=35.47 Aligned_cols=30 Identities=23% Similarity=0.279 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
...+|..-|+=+.+.|...+++|..+-.+|
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666655443
No 46
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=90.67 E-value=0.16 Score=43.23 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
....+..||..|+..+...-+.|.||+.-...-||+|
T Consensus 98 ~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555554443
No 47
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=90.29 E-value=0.34 Score=31.48 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|++||.|++.|. ..+.+||+|+..||..+|
T Consensus 1 isrlee~~r~l~-------~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 1 VSRLEEDVRNLN-------AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 467888877764 455678888888877665
No 48
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=90.27 E-value=5.9 Score=31.57 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=44.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
.+++..+.|+.+|+..|.+-...-.+.+.....++.+|- +-..+|+.+...-..++..+...+.+|...|.
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667888888888888666666666666666666665 33445555555555555555555555555443
No 49
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=90.21 E-value=5.2 Score=32.26 Aligned_cols=74 Identities=20% Similarity=0.183 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
..|+..||..+..-...|..|+.+...||..|. ..+..+...+..|..|...+-..+....++...|=+.|-.
T Consensus 37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl~ 116 (131)
T 3tnu_A 37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKTR 116 (131)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555554 3344444455555555555555555555665555555544
Q ss_pred H
Q 023690 122 L 122 (278)
Q Consensus 122 L 122 (278)
|
T Consensus 117 L 117 (131)
T 3tnu_A 117 L 117 (131)
T ss_dssp H
T ss_pred H
Confidence 4
No 50
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=90.02 E-value=5 Score=30.30 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=47.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
++.+....||..+..+..... ..+.+++.++..||.+|+ .+.++.+....|-..|-+.=-+|.-+++
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~---~~~~~~q~~i~~lE~eL~----~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFA---VEAANYQDTIGRLQDEIQ----NMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345566667777776666653 346788889999998887 7777777777888888776666665554
No 51
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.93 E-value=5.7 Score=31.86 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-------~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (278)
-..|+..||..+..-...|..|+.+...||..|. ..+..+...+..|..|...+-..+-...++...|=+.|-
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl 113 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKL 113 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666665 334444455555555655555555566666666666655
Q ss_pred HH
Q 023690 121 TL 122 (278)
Q Consensus 121 ~L 122 (278)
.|
T Consensus 114 ~L 115 (129)
T 3tnu_B 114 AL 115 (129)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 52
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=89.90 E-value=0.37 Score=38.27 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 62 KDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
+.+.|.|+-++|+.++..-- -+++..+++++||.+|+..-...++.|.
T Consensus 30 R~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 30 RRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34456777777776654333 7888999999999999999999998875
No 53
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=89.86 E-value=4.6 Score=31.27 Aligned_cols=62 Identities=13% Similarity=0.225 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
||+-|..+=+.++-=...|.+|+++-..|..+.+ +.-....++|++|..|..+-...+..|-
T Consensus 11 LE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 11 LEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333344444444444444443 1112345566677777666666666553
No 54
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=89.85 E-value=4.5 Score=31.05 Aligned_cols=38 Identities=21% Similarity=0.444 Sum_probs=26.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.+..++.++..++.+|.+-...+.+|+.++..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777665
No 55
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=89.50 E-value=1.8 Score=36.32 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=30.1
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 023690 25 DPFEQLDVARKITSIAISTRVSDLES---EHSALRSQLAEKDSRIAELQS 71 (278)
Q Consensus 25 DP~EQLdlarkIts~A~atRVs~LE~---E~~~LR~~LaEKd~~i~~Lq~ 71 (278)
|=.++|-++|++.+. ...|+.+||. +...|...|..++..+..|+.
T Consensus 5 ~LEd~L~~~r~~l~~-~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~ 53 (135)
T 2e7s_A 5 SLEEQLNKSLKTIAS-QKAAIENYNQLKEDYNTLKRELSDRDDEVKRLRE 53 (135)
T ss_dssp -CCSTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445788888886643 3677777776 555555566667777666665
No 56
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=89.08 E-value=8.4 Score=31.61 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 023690 91 KERLSKENEALTNTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (278)
..++.+.+..|..-+|+...=|.-+|.+|
T Consensus 77 ~k~Y~~~~keLd~~ik~qekiIdnFE~ik 105 (119)
T 3etw_A 77 ASKYEDALKKLEAEMEQQKAVISDFEKIQ 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777666666554
No 57
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=88.90 E-value=4.5 Score=30.60 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (278)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (278)
+-++|.+-.....+|+++|..|+..|. .+..+...+..|-..|..+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLE----KSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 445666666677788888888887666 6776666666665555544
No 58
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=88.82 E-value=0.59 Score=44.45 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=23.8
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
++++..|+.|+..|++++.+.++.|++++.++..++..|
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 2 ASKIAALKEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777777777777777777777766555554433
No 59
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=88.57 E-value=6.9 Score=38.44 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADK--ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~--~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
.|+..+.+++..+.+++..+......|. ++....++. .+.......|...+..|+..|.+||..-.+++..+.
T Consensus 125 ~Iq~slk~~Q~Qi~en~n~~~~~~~~~e-~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 125 MIDNKLVKTQKQRKDNDIILSEYNTEME-LHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhcccccccchhhHHHHHHHHHH-HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3555666666666666666666555554 111111111 123444556777788888888888888777776654
No 60
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=88.39 E-value=2.3 Score=34.70 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=7.7
Q ss_pred hhhhHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLA 60 (278)
Q Consensus 45 Vs~LE~E~~~LR~~La 60 (278)
+.+|..+.+.|+.+|.
T Consensus 8 ~~~lq~~~~ql~~qL~ 23 (112)
T 1x79_B 8 VKKLQLMLRQANDQLE 23 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555555444
No 61
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.20 E-value=2.4 Score=33.92 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=12.7
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQ 58 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~ 58 (278)
..+..+|..||.|..+||+.
T Consensus 15 ~~lr~ei~~Le~E~~rLr~~ 34 (100)
T 1go4_E 15 DTLRLKVEELEGERSRLEEE 34 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777776654
No 62
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=87.95 E-value=6.2 Score=29.46 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=30.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.+..|+..+|.++......+...+..|..|+.|+..||..|-
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld 58 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELD 58 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 345677777777777777777777777777777777777765
No 63
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.89 E-value=3.4 Score=29.69 Aligned_cols=33 Identities=30% Similarity=0.491 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
...++...|.++|..|...|..|...+..|+.+
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555667777888888888888888877554
No 64
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=87.84 E-value=2.7 Score=34.79 Aligned_cols=60 Identities=18% Similarity=0.288 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (278)
||.++..-.+-|.+++.....-..-|..|-..|-..-.+......+|+.|...|...+++
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~ 89 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQD 89 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555544444444444444444311111122344444444444443333
No 65
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.62 E-value=2.5 Score=42.54 Aligned_cols=61 Identities=23% Similarity=0.261 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---------------------HHHHHHHHHHhhc
Q 023690 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS---------------------KLEVFRKTLVQSL 126 (278)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva---------------------KLE~FKk~LmqSL 126 (278)
+|++++..|+..++ .-...+..|++-.+.+...++||.-||+ --|+.-|+|.|-+
T Consensus 114 ELRRrIqyLKekVd----nQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 114 DLRSRIEVLKRKVI----EKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHHh
Confidence 55555555555554 2223444555555555555555655554 2567889998876
Q ss_pred ccccCC
Q 023690 127 KDDEDA 132 (278)
Q Consensus 127 q~d~~~ 132 (278)
--|-.+
T Consensus 190 a~dL~p 195 (562)
T 3ghg_A 190 AKDLLP 195 (562)
T ss_dssp TTCCCC
T ss_pred hcccCC
Confidence 666543
No 66
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=87.47 E-value=6.6 Score=39.54 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 57 SQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 57 ~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
+.|.++.....+++..+.++-.+|..++..+.++.+.-..-...|.+.|+.|.-++.|||+
T Consensus 92 E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEv 152 (562)
T 3ghg_A 92 EILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEV 152 (562)
T ss_dssp HTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444222222222222224445555555555555555554
No 67
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=87.44 E-value=13 Score=32.05 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=39.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
++.+|.-++.|+.++.-=...-..|++.+..|..+|. .-..+..+.+..|+..+..|..-++.+.--..|++.=+|+
T Consensus 43 ~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~ 122 (168)
T 3o0z_A 43 ISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKE 122 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444455555555555554 2223333444445555555555555555555555555555
Q ss_pred HHhh
Q 023690 122 LVQS 125 (278)
Q Consensus 122 LmqS 125 (278)
|--.
T Consensus 123 L~Ek 126 (168)
T 3o0z_A 123 AQDM 126 (168)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 68
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=87.43 E-value=8.8 Score=29.91 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=26.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
||+.+|..|..|....-.+..+-...+.+++.+...+|.++.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~ 47 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIV 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 777888777777666666555555555555555555555554
No 69
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=87.04 E-value=4.9 Score=31.20 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
+.||+||. -|+-.-.+| .++...-..++.+|+.+...|..|..|...|...++.|
T Consensus 17 SALeaEIq-------AKQ~i~EEL-s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 17 EALEEEVL-------TRQSLSREM-EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45565554 344444455 34444444444888899988888888866665555543
No 70
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=87.03 E-value=9.2 Score=29.74 Aligned_cols=77 Identities=16% Similarity=0.267 Sum_probs=38.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----------~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|+...+..|+.|-.+|.+.|.+=+..-+.|...+..++.++. .....-.-+...+++|+++|.++..--.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~~L~~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~ 87 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAERLDQEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQ 87 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554333333333333333333332 1112233344667778888888777666
Q ss_pred hhHHHHH
Q 023690 110 RDVSKLE 116 (278)
Q Consensus 110 rDvaKLE 116 (278)
..+.||.
T Consensus 88 ~qLdkL~ 94 (96)
T 3q8t_A 88 MQLDKLK 94 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 6666663
No 71
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=86.97 E-value=5.6 Score=30.52 Aligned_cols=23 Identities=0% Similarity=0.049 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHH
Q 023690 91 KERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDva 113 (278)
++.++.+.+.|...-|.+..||+
T Consensus 43 iE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 43 IQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443
No 72
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=86.87 E-value=6.3 Score=27.90 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
...++...|..||..|...|..|..++..|+.
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556667777777888888877777743
No 73
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=86.55 E-value=3.4 Score=31.46 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=39.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
+.+....||..+..+.... ...+.+++..+..+|.+|+ .+..+.+....|-..|-+.=-+|--+++
T Consensus 8 L~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~----~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 8 LQCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp ----CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444455666555555544 3355667777777777776 6666666667777777766556655554
No 74
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=86.55 E-value=11 Score=30.03 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lmq 124 (278)
...++...|.+..+.+.+.=.+|+-.++-|+.-|..|+.
T Consensus 65 ~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 65 TSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444444444444444455555555555555554
No 75
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=86.22 E-value=3.5 Score=33.28 Aligned_cols=50 Identities=28% Similarity=0.483 Sum_probs=31.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE 99 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~ 99 (278)
+-+-.|++.||.|..+||..-.+=...|.+|+..|. ....+|..|..||.
T Consensus 40 l~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~eve-----------rL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 40 LELEKSLSRMEDENNRLRLESKRLDARVRELELELD-----------RLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 456678888999998888875555555555554433 34445555555554
No 76
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=85.98 E-value=1.5 Score=34.14 Aligned_cols=35 Identities=37% Similarity=0.530 Sum_probs=20.8
Q ss_pred HHHHHhhhhhHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESE--------------HSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 39 ~A~atRVs~LE~E--------------~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
+-+.-||+.||.| +..|+++|.+|+..|.-|+.++
T Consensus 29 ~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 29 RHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3456667777644 5566666666666666665544
No 77
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=85.90 E-value=7.2 Score=29.64 Aligned_cols=66 Identities=15% Similarity=0.246 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
.|+..|+.+.+..+..|.+++.++. ..+.........|..|...+-..+....++...|=+.|-.|
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~-------~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~L 68 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLA-------RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLAL 68 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666677776665555666655443 22334445555555565566666666666666666665443
No 78
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.89 E-value=16 Score=33.81 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 023690 66 IAELQSQIESIYSSLS 81 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~ 81 (278)
...||+++..++..|.
T Consensus 399 ~~~~~~~~~~~~~~~~ 414 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQ 414 (471)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHH
Confidence 3445555555554444
No 79
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=85.88 E-value=1.9 Score=31.15 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
+.....++...|.++|+.|...|..|.+++.-|..
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888999999999999999888844
No 80
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=85.70 E-value=2.3 Score=39.87 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=32.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
++..++++|..|+.+|...+...+..|..|++++..++..|+
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~ 43 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVT 43 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 456788899999999988888888888888888777665554
No 81
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=85.40 E-value=16 Score=31.04 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=9.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 105 VRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 105 vKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
+..|+..|..| |+||+.+.+|
T Consensus 131 l~~lq~ql~~L----K~v~~~m~~e 151 (154)
T 2ocy_A 131 LDTLTLQLKNL----KKVMHSLDNE 151 (154)
T ss_dssp HHHHHHHHHHH----HHTTSCCC--
T ss_pred HHHHHHHHHHH----HHHHHHhhhc
Confidence 33444444444 5566665554
No 82
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=85.07 E-value=2.2 Score=40.45 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
+..|+.++.+-.+.+.+|++++..++.
T Consensus 5 ~~~~~~~~~~l~~~~~~l~~~~~~~~~ 31 (403)
T 4etp_A 5 IAALKEKIAALKEKIAALKEKIKDTEL 31 (403)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444443
No 83
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=85.02 E-value=3.5 Score=32.24 Aligned_cols=64 Identities=11% Similarity=0.108 Sum_probs=42.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
....||..+..+...++ ..+..++..+..||.+|+ .+.++.+....|-..|-+.--+|.-+++-
T Consensus 20 ~~~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~----~~r~e~~~ql~EYq~LlnvKl~Le~EIat 83 (95)
T 3mov_A 20 ESRACLERIQELEDLLA---KEKDNSRRMLTDKEREMA----EIRDQMQQQLNDYEQLLDVKLALDMEISA 83 (95)
T ss_dssp CCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555443 356778888888898887 67777777777877787766667655543
No 84
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=84.69 E-value=4.1 Score=31.65 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
+..++...|.+||..|-..|..|..+|..|..+
T Consensus 40 e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677889999999999999999999887443
No 85
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=84.63 E-value=4.7 Score=30.98 Aligned_cols=40 Identities=20% Similarity=0.354 Sum_probs=21.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
.-+..++..|..||..||-++.+-...|..|+++-..+-.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~ 62 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILL 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555555555554444333
No 86
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=84.44 E-value=3.3 Score=29.57 Aligned_cols=33 Identities=21% Similarity=0.400 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
+....++...|..||+.|...|..|...++.|.
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455566777788888888888888887774
No 87
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=84.17 E-value=1.3 Score=37.78 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=25.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
.||..++.|...|..|+..|.+|++|+..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67888888888888888888888877776663
No 88
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=84.06 E-value=19 Score=31.59 Aligned_cols=90 Identities=16% Similarity=0.286 Sum_probs=51.5
Q ss_pred CCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 24 SDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 24 ~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (278)
.||++ +-+.+..+++.. +..|+.++..|..+.......+.+|.+++..+ . ++|-.-|.+-+..
T Consensus 117 ~d~~e---~i~elfd~~~~~-~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~-----------v--~~K~~~E~~L~~K 179 (213)
T 1ik9_A 117 ENPAE---VIRELIAYALDT-IAENQAKNEHLQKENERLLRDWNDVQGRFEKA-----------V--SAKEALETDLYKR 179 (213)
T ss_dssp SCHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHH
T ss_pred CChHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHH
Confidence 45554 223334444433 55777777777666655555555554333321 1 1334456666666
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhccccc
Q 023690 104 TVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (278)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (278)
=|--||--=+|+..+++.|++..|+.+
T Consensus 180 F~~lLNeKK~KIR~lq~~Ll~~~~~~~ 206 (213)
T 1ik9_A 180 FILVLNEKKTKIRSLHNKLLNAAQERE 206 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 777777777777777777777666544
No 89
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=83.98 E-value=15 Score=29.37 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 023690 99 EALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~F 118 (278)
-.|.+.|..|.-++..|+..
T Consensus 86 ~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 86 LDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666555443
No 90
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=83.47 E-value=14 Score=28.59 Aligned_cols=42 Identities=7% Similarity=0.141 Sum_probs=24.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
||+.++..|--|....-.+...-...+.+++.+...++..+.
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~ 47 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQ 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 677777776666555555555555555555555555554443
No 91
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=83.43 E-value=7.8 Score=32.83 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA-------------LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~-------------La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
|+....+|++++..+|.+|+ +..-+..++.+|... +.+--...+...++++..|+.|.+-|+.
T Consensus 27 Ke~l~~~l~~~i~q~d~elq----QLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 27 KEEAEREISNGIANADQQLA----QLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777776 333333333333322 1122244555666666666666655543
No 92
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=83.34 E-value=4.9 Score=30.38 Aligned_cols=29 Identities=10% Similarity=0.150 Sum_probs=12.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
|..+|-+.++++++|+.-=+.|.+-|++-
T Consensus 33 Ln~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 33 LSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444555555554445555555443
No 93
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.05 E-value=4.6 Score=28.64 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (278)
-|...+.+|+.++..|+.+-. ....++..|..|+..|-+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~----~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNG----QLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 455677788877777765544 444555555555555543
No 94
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=82.71 E-value=14 Score=28.13 Aligned_cols=61 Identities=11% Similarity=0.204 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 58 ~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
.+..|+..+..|++++...+... +...+.+.+|..|++.|..++....--+++|..-|..|
T Consensus 15 Em~~~eeel~~lke~l~k~e~~r----kele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eL 75 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIK----KELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHL 75 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34456666777776666666444 47777777888888888777444444445555444444
No 95
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.20 E-value=9.5 Score=29.47 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
+..++|..|..|+..+.+....|.++..+|.
T Consensus 31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 31 ELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5556666666666666666666666666664
No 96
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=81.96 E-value=11 Score=35.10 Aligned_cols=90 Identities=11% Similarity=0.178 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
++-..|..|+++|+.++..++..+..|.+.+..|+..+.....-.. ..+ ...-...-|++ +..+|--|...-+
T Consensus 302 ~~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e----~~~~~~~~~~~~~ 376 (406)
T 4dyl_A 302 LTVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERV-QLLGKRQVLQE----ALQGLQVALCSQA 376 (406)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGG-GGHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHH-HHHhHHhhHHH----HHHHHHHHHhHHH
Confidence 3456788999999999999999999999999999877765432111 010 00111111221 2345556667777
Q ss_pred HHHHHHHHHHhhccccc
Q 023690 114 KLEVFRKTLVQSLKDDE 130 (278)
Q Consensus 114 KLE~FKk~LmqSLq~d~ 130 (278)
||++-|-.|-+.|++-.
T Consensus 377 ~~~~q~~~~~~~~~~~~ 393 (406)
T 4dyl_A 377 KLQAQQELLQTKLEHLG 393 (406)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 77777666666665543
No 97
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=81.84 E-value=8.2 Score=26.76 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=24.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK 96 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~ 96 (278)
..||..+..+..+..++...+..+..++..+...|. .+.+++.+|..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~----~~~~~I~~~k~ 54 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLN----TIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 445555555555555555555555555555444443 45555554433
No 98
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=81.80 E-value=18 Score=28.84 Aligned_cols=43 Identities=23% Similarity=0.399 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 34 rkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
-|...--++.....||+-...||.+-+++..+|.+||.|+...
T Consensus 16 EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 16 EKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556677778889999999999999999999999887643
No 99
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=81.56 E-value=0.78 Score=32.79 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 87 AQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
.+.+++.|.+...+|..-+-.|.|||++
T Consensus 29 lendnanlekdianlekdianlerdvar 56 (56)
T 3he4_A 29 LENDNANLEKDIANLEKDIANLERDVAR 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhcccchHHHHHHHHHHHHHHHHHhhcC
Confidence 3456777777777777777777777753
No 100
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=81.27 E-value=9.7 Score=28.73 Aligned_cols=17 Identities=12% Similarity=0.469 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023690 64 SRIAELQSQIESIYSSL 80 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l 80 (278)
..|..|+.++..|+..|
T Consensus 29 ~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 29 QLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444444
No 101
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=80.87 E-value=15 Score=34.31 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=16.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRI 66 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i 66 (278)
.+..+...||..+..+|....+.+...
T Consensus 364 ~l~~~~~~le~~~~~~~~~~~~~~~~~ 390 (487)
T 3oja_A 364 TLEQKKKALDEQVSNGRRAHAELDGTL 390 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence 555666666666666666665555444
No 102
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=80.86 E-value=6.7 Score=27.80 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (278)
+.+..|.+|-..|...|. .+.+++.+|.+|-+.|
T Consensus 16 ~~l~~L~~rN~rL~~~L~----~AR~el~~Lkeele~L 49 (51)
T 3m91_A 16 ARIDSLAARNSKLMETLK----EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 333444444444444443 5666666665555544
No 103
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=80.77 E-value=2.6 Score=37.13 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
.+||.+..+--+.|-..+..+++.+.+|+.+|+.||+.|
T Consensus 378 l~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 378 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666777788888999999999999986
No 104
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=80.09 E-value=12 Score=31.80 Aligned_cols=28 Identities=14% Similarity=0.151 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 023690 27 FEQLDVARKITSIAISTRVSDLESEHSAL 55 (278)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~L 55 (278)
++.|-.+|+... ....|+..||..-..+
T Consensus 19 eD~L~~~R~el~-~~~~ri~~lE~~r~~~ 46 (154)
T 2ocy_A 19 EEQLNKSLKTIA-SQKAAIENYNQLKEDY 46 (154)
T ss_dssp HHHHHHHHHHHH-HHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345555555544 3345666666543333
No 105
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=79.92 E-value=13 Score=35.90 Aligned_cols=17 Identities=12% Similarity=0.219 Sum_probs=10.7
Q ss_pred HHHHHhhhhhHHHHHHH
Q 023690 39 IAISTRVSDLESEHSAL 55 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~L 55 (278)
.-|..||.+|-.++..|
T Consensus 63 r~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 63 QDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 55666776666665554
No 106
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=79.45 E-value=6.1 Score=30.05 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
...++...|.+||..|...|..|..+|..|..+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666788889999999999999998888543
No 107
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=79.22 E-value=5.5 Score=35.15 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.+.++|..-|.+|..|+.....|..+|. ...+++..|+++-++|.+.++.+.-.++|-
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~----~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~ 67 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD----TKATEIKQLQKQIDSLNAQVKELKTQTSQQ 67 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 3566777888889999988888887776 888899999999999999988776666553
No 108
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=79.04 E-value=3.7 Score=30.71 Aligned_cols=37 Identities=11% Similarity=0.215 Sum_probs=18.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~ 79 (278)
.++..||.++..|......-...+..|..++..|..+
T Consensus 29 ~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~E 65 (70)
T 1gd2_E 29 DHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666555554444344444444444444433
No 109
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.74 E-value=42 Score=31.19 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=13.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAE 61 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaE 61 (278)
..++-..|.++..+...++..+.+
T Consensus 369 ~~~le~~~~~~~~~~~~~~~~~~~ 392 (487)
T 3oja_A 369 KKALDEQVSNGRRAHAELDGTLQQ 392 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHH
Confidence 445556666666665555555543
No 110
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=78.52 E-value=9.1 Score=27.38 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~T 104 (278)
-|-..+.+|+.++..|+..-. ....++..|..|...|...
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~----~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKS----ALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 456677778777776665443 3334444555555554443
No 111
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.30 E-value=20 Score=27.63 Aligned_cols=62 Identities=18% Similarity=0.287 Sum_probs=38.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
.-=..||.++..|+.+-.-....+ .+..+..|- ..+..+..++.+|.-|.++|...+..+..
T Consensus 30 qqN~~Le~~i~~l~~~~~~~~~~~--ye~~i~~Lr----~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 30 QQNKILLAELEQLKGQGKSRLGDL--YEEEMRELR----RQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCcHHH--HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334557888888877643322221 123333333 33347778888899999998888877754
No 112
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=78.11 E-value=11 Score=29.97 Aligned_cols=51 Identities=24% Similarity=0.439 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (278)
-.++..|..++.+.+..+..|+.++..-. .+-..+..++.++..|-..|..
T Consensus 11 re~l~~le~~~~~~~~e~~~L~~~l~eE~----~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 11 KEDYNTLKRELSDRDDEVKRLREDIAKEN----ELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666666555444322 2334555666666666665543
No 113
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=77.92 E-value=34 Score=29.68 Aligned_cols=60 Identities=20% Similarity=0.249 Sum_probs=47.6
Q ss_pred CCCCchhhHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 22 LPSDPFEQLDVARKI----TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 22 LP~DP~EQLdlarkI----ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+|.-|.|||=-.++- +-.+++.+.-.||.|-..|+..-+|+|......+.++..|-..+-
T Consensus 2 m~~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d 65 (169)
T 3k29_A 2 MVRYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLD 65 (169)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788886433332 267899999999999999999999999998888888888766654
No 114
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=77.79 E-value=18 Score=30.62 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
+|.++.+--..+..-...|.+|++.+-.+...|
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nl 58 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNL 58 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555555554444444444555554444444333
No 115
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=77.30 E-value=3.8 Score=36.02 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
++||.+..+--+.|-..+..+++.+++|+.+|++||+.+=
T Consensus 168 l~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~ 207 (425)
T 1yf2_A 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLL 207 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777788888889999999999998764
No 116
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=77.21 E-value=25 Score=27.85 Aligned_cols=69 Identities=17% Similarity=0.131 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FK 119 (278)
++...|+.-.|.++.+.+|+.++..+...-+.++....+...+|.+|...=...|..|++++..++.=+
T Consensus 16 qL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~ 84 (107)
T 2no2_A 16 QVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSE 84 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555333344444455555555554444445555555555544433
No 117
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=77.01 E-value=4 Score=32.80 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
++|.+|+..||+.|. .+..|+.++..|+..|
T Consensus 2 ~~l~~~~~~l~~~~~----~~~~l~~~~~~l~~~l 32 (182)
T 3kqg_A 2 STLNAQIPELKSDLE----KASALNTKIRALQGSL 32 (182)
T ss_dssp -----------CHHH----HHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 567788888888776 3445555555555444
No 118
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=76.89 E-value=31 Score=34.31 Aligned_cols=44 Identities=11% Similarity=0.141 Sum_probs=25.3
Q ss_pred HHHHHHhhhhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSA--------------LRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~--------------LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
..-+..||.+|-..+.. +.+.|.++...+.+.+..+.++-.+|.
T Consensus 60 erdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe 117 (491)
T 1m1j_A 60 DQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELR 117 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence 34455566555554433 455666666666666666666555555
No 119
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.88 E-value=4.4 Score=28.01 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023690 60 AEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 60 aEKd~~i~~Lq~r~s~le~~l 80 (278)
.+.+..+++|++|++.|+.+=
T Consensus 13 k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 344555566666666555443
No 120
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=76.66 E-value=9.3 Score=26.39 Aligned_cols=37 Identities=19% Similarity=0.399 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
+.+|+.|+..||. |..+.+++..-|+.||.-|-+-+|
T Consensus 5 l~eLE~r~k~le~----~naeLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 5 LSELENRVKDLEN----KNSELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHhHHHHHHHhc
Confidence 3456666666653 334666777778888877765544
No 121
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.26 E-value=10 Score=26.80 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.....|.+|.+-...--+.+.+|..+|++|
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555555555555554
No 122
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=76.16 E-value=3.9 Score=34.29 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
..||..+..|..++..++..|++|+.|+..+|.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457777777777777777777777777766653
No 123
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.92 E-value=18 Score=29.15 Aligned_cols=24 Identities=25% Similarity=0.181 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
....+|...|--+...|+.+++.|
T Consensus 54 ~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 54 EEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444445555555555554
No 124
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=75.64 E-value=23 Score=28.51 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
+|..||.+|.|.++.+++|+..+
T Consensus 31 qVdlLKD~LEe~eE~~aql~Re~ 53 (103)
T 4h22_A 31 QVDTLKDMLLELEEQLAESRRQY 53 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555444444444333
No 125
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.45 E-value=27 Score=41.64 Aligned_cols=10 Identities=20% Similarity=0.554 Sum_probs=5.1
Q ss_pred HHHhhccccc
Q 023690 121 TLVQSLKDDE 130 (278)
Q Consensus 121 ~LmqSLq~d~ 130 (278)
.|+.+|..|.
T Consensus 2077 ~Li~gL~~Ek 2086 (3245)
T 3vkg_A 2077 ALLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHhhhhcc
Confidence 3555555543
No 126
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=75.39 E-value=15 Score=25.59 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
+|+++|..||..|. .. +.++++=-.....+-.||.+-|.+||.
T Consensus 2 dlEekv~~Le~~ld----~L---qTr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLD----TL---QTRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67888888887775 22 223333333445566677777777775
No 127
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.29 E-value=7.5 Score=37.11 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=15.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
..||.|+..|++++.+-++.|++++..+..+
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~ 36 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETC 36 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555544444333
No 128
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=75.19 E-value=2.5 Score=38.72 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.|++....++..|...|.-|..+.|.|.++|.+|+.
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~Lke 89 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALRE 89 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888888888888888877744
No 129
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=75.05 E-value=3.8 Score=39.15 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~~ 132 (278)
+..+++.+|.+++..+...++.+...+-+.|..+|.|-.-|+|-..+
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 55555555555555555555566666666677777777776665553
No 130
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=75.04 E-value=12 Score=33.25 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=8.2
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEK 62 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEK 62 (278)
+..+++++..++.+|..-
T Consensus 72 l~~~~a~l~~~~a~l~~a 89 (369)
T 4dk0_A 72 LNTRKAALASYQAQLVAR 89 (369)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444454444433
No 131
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=75.03 E-value=47 Score=29.98 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=24.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|..||+-|=.|++.+-...+.+...+..-=+.|-..|..|+
T Consensus 67 IsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svq 107 (234)
T 3plt_A 67 VTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQ 107 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666667777776666666666555444455555555555
No 132
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=75.02 E-value=19 Score=31.63 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEK 62 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEK 62 (278)
+..+|+++..++.++..-
T Consensus 71 ~~~~~a~l~~~~a~l~~a 88 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQA 88 (341)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555554444433
No 133
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=74.47 E-value=16 Score=35.96 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
.+|+.+.+.+-.++ ++++..-++...|..|-..|...++.|...+..||.=-..++.+|-+
T Consensus 50 ~~l~~~rn~~sk~i-~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 50 DEHNKKLNSVQKEI-GKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHH-HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 34444444444433 23334445566788888888888888888888888777778877754
No 134
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=74.16 E-value=34 Score=27.78 Aligned_cols=72 Identities=21% Similarity=0.320 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQ-----ADKERLSKENEALTNTVRKLQRDVSK-LEVFR 119 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~-----ee~~kL~~E~~~La~TvKkL~rDvaK-LE~FK 119 (278)
+.|...||..|.==+..|.-| .-++.+|. .+++... +++.++..++..|.+.+|++.+-|.| ++.++
T Consensus 23 ~~ELeSlK~EL~HfE~rl~K~----rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~ 98 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKIEKH----NHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLS 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777888887433333322 22233332 2221111 23334556688888999999999988 56777
Q ss_pred HHHHh
Q 023690 120 KTLVQ 124 (278)
Q Consensus 120 k~Lmq 124 (278)
..+|+
T Consensus 99 ~rI~~ 103 (109)
T 2fcw_A 99 GRISR 103 (109)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77775
No 135
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=74.14 E-value=5 Score=35.91 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
-.++|.+..+--+.|-..+..+++.+.+|+.+|+.||+.+=
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~lf 393 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKLF 393 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566666666667777788888999999999999999864
No 136
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=73.99 E-value=33 Score=27.56 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=44.9
Q ss_pred hhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKD--------SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd--------~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
..||.|..+|.+.|..-| +..++|...|-.|-..++..|..+..+.+.+-.=..+-.-..++...|+.||+.
T Consensus 16 ~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire 95 (101)
T 4aj5_1 16 STLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIRE 95 (101)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 468999999999888322 345788888888887777444444444333332222222334455567777765
Q ss_pred H
Q 023690 118 F 118 (278)
Q Consensus 118 F 118 (278)
|
T Consensus 96 ~ 96 (101)
T 4aj5_1 96 Y 96 (101)
T ss_dssp H
T ss_pred H
Confidence 5
No 137
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=73.69 E-value=13 Score=32.04 Aligned_cols=33 Identities=15% Similarity=0.297 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
...++...|.+++..|...+..|.....|++.|
T Consensus 60 ~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~ 92 (174)
T 2p22_A 60 HLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQF 92 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667777777777777777777777666
No 138
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=73.57 E-value=4.2 Score=26.84 Aligned_cols=26 Identities=35% Similarity=0.421 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
+.+.+++.+.|..||..|.+-|.+|.
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44556666777777777777666654
No 139
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=73.55 E-value=5 Score=26.60 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
|+.+..+..++|..+|..|++.|.+|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556667777888888888888777653
No 140
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=73.49 E-value=22 Score=31.84 Aligned_cols=62 Identities=15% Similarity=0.289 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHH
Q 023690 56 RSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD-VSKLEVF 118 (278)
Q Consensus 56 R~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD-vaKLE~F 118 (278)
|..|.|--.++..|.++|..|+.++ +.|+.-+++...|+++-..|+..++.|... +..||.+
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi-~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~e~~ 169 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEI-ARLKKENKELAEVAEHVQYMAELIERLNGEPLDNFESL 169 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCc
Confidence 4444555566677777777777776 466677777777777777777777776542 3344444
No 141
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=72.83 E-value=29 Score=26.47 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=53.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---------------DKLGQAQADKERLSKENEALTNTV 105 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---------------~rL~~a~ee~~kL~~E~~~La~Tv 105 (278)
|--.|..|=.|+.++=..+.|+|....++..++..+-..+. .++.....+...|.+||=.|++++
T Consensus 9 yld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~ 88 (104)
T 4afl_A 9 YLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQT 88 (104)
T ss_dssp HHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34467788888888888888888888887777665544332 345666777888899998888875
Q ss_pred HH-HhhhHHHHH
Q 023690 106 RK-LQRDVSKLE 116 (278)
Q Consensus 106 Kk-L~rDvaKLE 116 (278)
-- +.|.+.+|+
T Consensus 89 ~dlvdkhirrLD 100 (104)
T 4afl_A 89 YEMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 43 345555554
No 142
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=72.80 E-value=5.1 Score=28.54 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (278)
-|-..|.+|+.++..|+.+-. ....++..|..|+..|
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~----~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNS----ELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 455667777777776665443 3333444444444433
No 143
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=72.64 E-value=19 Score=34.73 Aligned_cols=68 Identities=15% Similarity=0.177 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
+-...+.+|+.+.+.+..++. +++..-++..+|..|-..|...+|.|..++..+|.=-..++.+|-+-
T Consensus 42 ~~~~~~~~l~~~~n~~sk~i~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 109 (455)
T 2dq0_A 42 TKLKEINRLRHERNKIAVEIG-KRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNI 109 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333344455555555544443 33333355667888888888888888888888888778888887654
No 144
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=72.48 E-value=36 Score=30.20 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKE 97 (278)
Q Consensus 48 LE~E~~~LR~~La-EKd~~i~~Lq~r~s~le~~l~-----~rL~~a~ee~~kL~~E 97 (278)
|+.++......|. =|+.+|..|++++.....+-. .-|-++-.|+.+|+-|
T Consensus 82 ~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lE 137 (214)
T 2cly_A 82 ADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALE 137 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666 578888888888876443322 4444555566666544
No 145
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=72.47 E-value=28 Score=26.09 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 69 LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 69 Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
|+..+..+|..+...+......+..|..|...+-..+....++...|=+.|-.|
T Consensus 13 LE~~l~e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~L 66 (84)
T 1gk4_A 13 LERQMREMEENFAVEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333333333333344556666666666666666666777777777776666544
No 146
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=72.47 E-value=8.6 Score=29.60 Aligned_cols=30 Identities=27% Similarity=0.326 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+..-++.-|..|..++..+..+++.-+..|
T Consensus 41 ELt~E~e~l~~El~s~~~~~~r~~~ri~el 70 (77)
T 2w83_C 41 ELTCEKDVLQGELEAVKQAKLKLEEKNREL 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 147
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=72.27 E-value=25 Score=27.32 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 57 SQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 57 ~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
..|.|--..+..|.+++..++.++ ++|+.-+++...|+..-.-|+.-+++|
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi-~~Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEI-ARLRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334455555666666666666665 355555555555666666666666555
No 148
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=71.84 E-value=27 Score=29.65 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
...+...++..+.+.|....+.|+.+.+|||.
T Consensus 77 asr~akk~~ea~la~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 77 INRNLLGNAKLELDQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333444444445555555555556555543
No 149
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=71.55 E-value=33 Score=26.55 Aligned_cols=35 Identities=11% Similarity=0.167 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.|+.++..|+..=++--+.+.+|++.-..++.+|.
T Consensus 8 ~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~ 42 (96)
T 3q8t_A 8 QLQRELKELALEEERLIQELEDVEKNRKVVAENLE 42 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34444444444444434444444444444444443
No 150
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=71.48 E-value=15 Score=32.71 Aligned_cols=90 Identities=24% Similarity=0.303 Sum_probs=44.5
Q ss_pred hHHHHhcCCCCch---------hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 15 PEEVLQVLPSDPF---------EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG 85 (278)
Q Consensus 15 p~eil~vLP~DP~---------EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~ 85 (278)
.++|..+|=.+|+ ++|.|.... ..=||=.|.++..||++ +..||.+|
T Consensus 33 ~~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~-----~~aVSL~erQ~~~LR~r--------------~~~Le~~L----- 88 (252)
T 3e98_A 33 AEQVAAYLSQHPEFFVEHDELIPELRIPHQP-----GDAVSLVERQVRLLRER--------------NIEMRHRL----- 88 (252)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHH--------------HHHHHHHH-----
T ss_pred HHHHHHHHHhCCHHHhhCHHHHHhCCCCCCC-----CCcccHHHHHHHHHHHH--------------HHHHHHHH-----
Confidence 4678899998886 344444432 22255666666666654 33333222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhcccccC
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVS---KLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDva---KLE~FKk~LmqSLq~d~~ 131 (278)
.+....+++|+.+.+.+..|...|- -|+.|-+.|...|+++=.
T Consensus 89 ---~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~ 134 (252)
T 3e98_A 89 ---SQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQ 134 (252)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCC
Confidence 2445667888999999999988887 577888888888876654
No 151
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=70.89 E-value=5.1 Score=26.39 Aligned_cols=26 Identities=4% Similarity=0.132 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
+.+.++..++|..+|..|.+.|.+|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566677777778877777666553
No 152
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=70.85 E-value=11 Score=33.63 Aligned_cols=60 Identities=23% Similarity=0.317 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
|+.+.+++|+.-+-+.-.+++ ..+--.++|+.|++.|...++||..|-+..=+| .++.++
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~----dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITf-e~~~ks 86 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYN----DLTKSHNTLSKELDNLRSRFGNLEGNTSERITI-KNILQS 86 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHccCCHHhccCH-HHHhhc
Confidence 566666666666666666665 555566779999999999999999999987777 444554
No 153
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=70.80 E-value=16 Score=25.36 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=27.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
.-|..||.|-..|+.+-.-|...|+-|++.+..|-
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 45778888888898888888888888887776554
No 154
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=70.72 E-value=32 Score=26.10 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=5.5
Q ss_pred HHHHHHHHHhhhHH
Q 023690 100 ALTNTVRKLQRDVS 113 (278)
Q Consensus 100 ~La~TvKkL~rDva 113 (278)
.|...|..|.-+++
T Consensus 67 dLE~kvesL~eEl~ 80 (86)
T 3swk_A 67 DLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444443333
No 155
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=70.57 E-value=17 Score=26.29 Aligned_cols=46 Identities=15% Similarity=0.184 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
...+|++. ....|..+..+++.+-++...=.+.|..|+.|++.+|.
T Consensus 17 ~lEnIv~~-l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~ 62 (65)
T 3m0d_C 17 VFENIVAV-LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQ 62 (65)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 33555543 44455555555555533333325555556655655554
No 156
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=70.29 E-value=5.5 Score=26.40 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|+.+.+++.+.|..+|..|.+-|.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556667777778888888777776654
No 157
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=70.28 E-value=20 Score=28.14 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 53 SALRSQLAEKDSRIAELQSQIESIYSS----LS----DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~le~~----l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
..||+.+.+|.-.|..|.+.+.....+ ++ -.|.+|..+...|+..-..|.+--+..|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRIN 89 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNEDRRIN 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 468888888888887776554433321 11 3444555555555554444444444433
No 158
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=70.12 E-value=37 Score=32.68 Aligned_cols=33 Identities=6% Similarity=0.130 Sum_probs=18.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~ 71 (278)
..|...|..||.-+..|-..-.+-...+..|+.
T Consensus 34 ~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 34 LTTDGELLEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777766666555555555544444443
No 159
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=69.79 E-value=23 Score=25.09 Aligned_cols=14 Identities=21% Similarity=0.211 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAE 61 (278)
Q Consensus 48 LE~E~~~LR~~LaE 61 (278)
|+.++..|..++..
T Consensus 3 ~~~~~~~le~k~~~ 16 (66)
T 3m0a_A 3 LLQRCESLEKKTAT 16 (66)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 33344444333333
No 160
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=69.16 E-value=32 Score=30.32 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
.|++|. +|..|=-.|.+||....--......|+.+|....+.|.++..-=+.+|.+|
T Consensus 71 FigDLe-kVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~l 127 (190)
T 3thf_A 71 HVDAVG-NITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDI 127 (190)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456663 555666666677777777666779999999999999999888888887765
No 161
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=69.02 E-value=6.3 Score=26.15 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|+.+..+..++|.+++..|++.|.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667777788888888888777664
No 162
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=68.79 E-value=18 Score=29.39 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
|+..|+.+|...++.+...+..+..|...+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei 54 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEA 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555555544444444444433
No 163
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=68.67 E-value=6.1 Score=26.19 Aligned_cols=27 Identities=11% Similarity=0.157 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|+.+..+..++|..+|..|.+.|.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 445566667777777777777666553
No 164
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=68.62 E-value=6.1 Score=26.20 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|+.+..++...|..||..|.+.|.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 344555666677777777776665553
No 165
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=68.59 E-value=39 Score=26.18 Aligned_cols=19 Identities=21% Similarity=0.476 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhHHHH
Q 023690 97 ENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 97 E~~~La~TvKkL~rDvaKL 115 (278)
.|..+.+.|+.-.+||.+|
T Consensus 79 ~R~~~~~klr~Yk~dL~~l 97 (102)
T 2qyw_A 79 FRNPMMSKLRNYRKDLAKL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666654
No 166
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=68.59 E-value=23 Score=24.84 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
-|.+++.+|+.+|.. |..||..|...+..|...+
T Consensus 19 RKk~~~~~LE~~v~~------------------L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 19 KKKEYVKSLENRVAV------------------LENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHh
Confidence 344667777766553 4455555555555555443
No 167
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=68.31 E-value=5.7 Score=26.62 Aligned_cols=29 Identities=28% Similarity=0.377 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
+.+..++..+|..+|..|.+.|.+|..-|
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34445555566666666666665554433
No 168
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=68.30 E-value=32 Score=32.23 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 023690 93 RLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaK 114 (278)
++..+++.++..-+.|.+++..
T Consensus 80 e~~~~Rd~~a~~k~~Le~~ier 101 (302)
T 3ibp_A 80 EAIVERDEVGARKNAVDEEIER 101 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555444
No 169
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=68.27 E-value=40 Score=26.21 Aligned_cols=61 Identities=25% Similarity=0.316 Sum_probs=29.8
Q ss_pred HHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 36 ITSIAISTRVSDLESE--HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 36 Its~A~atRVs~LE~E--~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
-..-|+..|-...|.+ -..-+++|.. |++++ + ..|..-.+++.+|+++.+.+...|++|..
T Consensus 17 ~aggaFgKrEaA~Ee~YfrqkekEqL~~-------LKkkl---~----~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 17 DAGGAFGKREQAEEERYFRARAKEQLAA-------LKKHK---E----NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcccHHHHhHHHHHHHHHHHHHHH-------HHHHH---H----HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3456777777777777 2222333321 44333 1 12224445555666665555555555543
No 170
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=68.10 E-value=13 Score=28.74 Aligned_cols=12 Identities=33% Similarity=0.559 Sum_probs=4.3
Q ss_pred hhhhhHHHHHHH
Q 023690 44 RVSDLESEHSAL 55 (278)
Q Consensus 44 RVs~LE~E~~~L 55 (278)
||..||.|-..|
T Consensus 44 r~~~Le~EN~~L 55 (87)
T 1hjb_A 44 KVLELTAENERL 55 (87)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 171
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=68.00 E-value=45 Score=32.12 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=6.9
Q ss_pred ccccCCCCcc
Q 023690 244 LSSVHSSHSS 253 (278)
Q Consensus 244 ~~~~~ss~~S 253 (278)
-|||..=+.+
T Consensus 333 GWWy~~C~~s 342 (409)
T 1m1j_C 333 GWWMNRCHAG 342 (409)
T ss_dssp CBCCSSSCSE
T ss_pred CCcCCCCCCC
Confidence 4788876665
No 172
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=68.00 E-value=38 Score=25.89 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
++||..+......|+.|..=-..|..--+ ...+...+|..|.+.|...|..|.+-.+-|+
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~----KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQ----KLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666544333333222 3445567788888888888877777665554
No 173
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=67.93 E-value=43 Score=32.99 Aligned_cols=88 Identities=11% Similarity=0.114 Sum_probs=60.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---------HHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSK---------ENEALTN 103 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~------~rL~~a~ee~~kL~~---------E~~~La~ 103 (278)
--|..-|..||..+..|-+.-.+-.+.|..|+.-+...+.... .+-+..+|++.+..+ -...|.+
T Consensus 91 ~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~ 170 (461)
T 3ghg_B 91 RPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRS 170 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHH
Confidence 3477788888888888888888888888888877777766555 223344555544444 3456777
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhc
Q 023690 104 TVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 104 TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
.+.++++.|.+||.--.+++.--
T Consensus 171 ~~~~~~~~i~~l~~~~~~~~~~c 193 (461)
T 3ghg_B 171 ILENLRSKIQKLESDVSAQMEYC 193 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhhhhc
Confidence 77888888888877666665553
No 174
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=67.91 E-value=23 Score=27.02 Aligned_cols=50 Identities=22% Similarity=0.362 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023690 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (278)
.+|++||..||..|. .. +.++++=-.....+-.||.+-|.+||.+=+.+.
T Consensus 3 ~dlEEKv~~LE~sld----~L---QTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~ 52 (74)
T 3swf_A 3 MGLEEKVTRMESSVD----LL---QTRFARILAEYESMQQKLKQRLTKVEKFLKPLI 52 (74)
T ss_dssp -CHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 468889999998775 22 233344344456677788899999998765543
No 175
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=67.87 E-value=8.4 Score=34.44 Aligned_cols=40 Identities=8% Similarity=0.156 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
++||.+..+--+.+-..+..+++-+++|+.+|+.||+.+=
T Consensus 166 l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~f 205 (406)
T 1ydx_A 166 KNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLF 205 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555655666666677777888889999999998763
No 176
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=67.74 E-value=25 Score=26.41 Aligned_cols=42 Identities=19% Similarity=0.355 Sum_probs=22.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH-----HH-HHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAE-----KD-SRIAELQSQIESIYSSLS 81 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaE-----Kd-~~i~~Lq~r~s~le~~l~ 81 (278)
.|=.++..||.++..|-.+|++ .| ..+.+|..++..++..|-
T Consensus 26 ~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666653 11 344555555555554443
No 177
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=67.37 E-value=14 Score=28.74 Aligned_cols=65 Identities=17% Similarity=0.179 Sum_probs=38.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
++|++++..|+.+...-+..|++++.++...+. ....++..+|..|-+.+-+..-.|-.-+|-++
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~~------~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~r 68 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRDA------KQTVQKHIDLLHTYNEIRDIALGMIGKVAEHE 68 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSCH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHc
Confidence 456666666666666555555555544432211 23456677777777777777666666666554
No 178
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=67.34 E-value=53 Score=29.71 Aligned_cols=97 Identities=19% Similarity=0.277 Sum_probs=44.9
Q ss_pred HhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHH--HHHHHHHHHHHHHHHHHHHHH-------------
Q 023690 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEH--SALRSQLA--EKDSRIAELQSQIESIYSSLS------------- 81 (278)
Q Consensus 19 l~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~--~~LR~~La--EKd~~i~~Lq~r~s~le~~l~------------- 81 (278)
-++||.+=|-|--+-.-|..-.=..+|..--.|+ +..-.|+. |-|-.+.+-+.|+..++..|.
T Consensus 28 ~sILPrNiFS~sYllyVi~qgtDvG~VA~KANeAGqgAYdAQVrNDEQDViL~dHe~rI~a~~a~l~dHE~RIt~~~~~i 107 (242)
T 3c9i_A 28 ASILPRNVFSKSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRIDVDDHESRITANTKAI 107 (242)
T ss_dssp SSSSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhHHHHHHhcccchHHHHhhhhhhhhhhhhHHHhcCcccceeeecchhhhhhhhcccccHHHHhhhhhhhh
Confidence 4689999888866555555332222222221221 11222222 334444444444444444444
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 82 ----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 82 ----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
-||..++.++.-|.-+-..|..+|....-.++-|
T Consensus 108 a~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal 145 (242)
T 3c9i_A 108 TALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISAL 145 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhheeecccccchhhhhhhhhhcccccccccchhhh
Confidence 3444555555555555555555554444444444
No 179
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=67.01 E-value=30 Score=25.92 Aligned_cols=45 Identities=9% Similarity=0.100 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
+...++..+..||.+|+ .+..+.+....|-..|.+.=-+|.-+++
T Consensus 6 e~~~~~~~i~~lE~eL~----~~r~e~~~ql~EYq~LlniKl~Le~EIa 50 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEIH 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666665 5555555556666666665556655554
No 180
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral PR; HET: NAG; 3.05A {Human parainfluenza virus 3}
Probab=66.85 E-value=15 Score=36.47 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=44.3
Q ss_pred HHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 30 LDVA--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (278)
Q Consensus 30 Ldla--rkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (278)
|.|| -+||+-+--.+..+.+++|.+||+.+..-.+.+.+|..-+..|-.+++ +.|+. =|+.|.-++.+
T Consensus 102 LGVataaqiTAavAl~qa~~na~~I~~lk~si~~tn~Av~~l~~g~~~l~~av~-----~lQd~-----IN~~i~PaIn~ 171 (490)
T 1ztm_A 102 LGVATSAQITAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-----SVQDY-----VNKEIVPSIAR 171 (490)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHhhhhhhh
Confidence 6677 889987777889999999999999999999999999999998888876 22221 25667778888
Q ss_pred HhhhHHHHH
Q 023690 108 LQRDVSKLE 116 (278)
Q Consensus 108 L~rDvaKLE 116 (278)
|.++++-++
T Consensus 172 l~C~v~~~~ 180 (490)
T 1ztm_A 172 LGCEAAGLQ 180 (490)
T ss_dssp HHHHHHHHH
T ss_pred cccHhHHHH
Confidence 888877653
No 181
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=66.66 E-value=6.7 Score=29.32 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023690 54 ALRSQLAEKDSRIAELQS 71 (278)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~ 71 (278)
.|...+..||..|.+|+.
T Consensus 15 ~~~~~i~~Kde~I~eLE~ 32 (67)
T 1zxa_A 15 DFAKILMLKEERIKELEK 32 (67)
T ss_dssp --CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccHHHHHHHHH
Confidence 344455556655555553
No 182
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=66.00 E-value=55 Score=26.99 Aligned_cols=50 Identities=30% Similarity=0.488 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSR----IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (278)
Q Consensus 52 ~~~LR~~LaEKd~~----i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~Tv 105 (278)
+..|+..|.++... +.+|+..|..|...|+ .+..+.++|-+++..|...+
T Consensus 55 V~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq----~a~ae~erlr~~~~~~~~r~ 108 (121)
T 3mq7_A 55 VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQ----DASAEVERLRRENQVLSVRI 108 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhchhhhhHh
Confidence 34555555543333 5555555555555444 66666666666666555443
No 183
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=65.89 E-value=21 Score=25.08 Aligned_cols=10 Identities=30% Similarity=0.405 Sum_probs=3.9
Q ss_pred hhhhHHHHHH
Q 023690 45 VSDLESEHSA 54 (278)
Q Consensus 45 Vs~LE~E~~~ 54 (278)
|..||.++..
T Consensus 24 ~~~LE~~v~~ 33 (55)
T 1dh3_A 24 VKSLENRVAV 33 (55)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444333
No 184
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=65.35 E-value=9.6 Score=28.44 Aligned_cols=64 Identities=8% Similarity=0.146 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLG---QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~---~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
..+=.+|...|.++..|.+++..|+.++. +|. ...++...|-++|=.|-+.+-.+-+...+-+.
T Consensus 6 ~d~I~~Lk~~d~~f~~L~~eH~~LD~~I~-~le~~~~~~~~l~~LKk~KL~LKDeI~~lL~~~~~~~~ 72 (76)
T 1zhc_A 6 RDEISVLKANNPHFDKIFEKHNQLDDDIK-TAEQQNASDAEVSHMKKQKLKLKDEIHSMIIEYREKQK 72 (76)
T ss_dssp HHHHHHSTTTSTTHHHHHHHHHHHHHHHH-HHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 33445566778888999999999998887 111 11227778888887777777766655554433
No 185
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=65.11 E-value=70 Score=31.33 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQ--------ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~--------ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
+-...+.+|+.+.+.+..++. +++..- ++...|..|-..|.+.+|.|..++..+|.=-..++.+|-+-
T Consensus 81 ~~~~~~~~l~~~rn~~sk~i~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~ 156 (501)
T 1wle_A 81 QLREQIRSLEEEKEAVTEAVR-ALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQ 156 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333444555555555555543 232221 35667888888888888888888888887777777777554
No 186
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=65.01 E-value=5.3 Score=37.37 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=27.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
|-.+|..+|+++..|+..|.+.+..|.+|+.++..|+..+
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456777777777787777777777777777776666544
No 187
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=64.92 E-value=50 Score=26.82 Aligned_cols=78 Identities=17% Similarity=0.155 Sum_probs=37.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
.+.+.-.++=.+..|..+....|.=|..|=.--. -.++-.+|+..|+.++. .+.++..+..+|++.|-..|.
T Consensus 52 ~~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~----see~Q~~ri~~L~~E~~----~~~~el~~~v~e~e~ll~~v~ 123 (132)
T 1ykh_B 52 PEEFSNTIDELSTDIILKTRQINKLIDSLPGVDV----SAEEQLRKIDMLQKKLV----EVEDEKIEAIKKKEKLMRHVD 123 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTC----CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3555555555555566666666655555542210 01111233444444333 444444455555555555555
Q ss_pred HHhhhH
Q 023690 107 KLQRDV 112 (278)
Q Consensus 107 kL~rDv 112 (278)
.+-+++
T Consensus 124 ~~l~~i 129 (132)
T 1ykh_B 124 SMIEDF 129 (132)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 555544
No 188
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=64.78 E-value=39 Score=32.11 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=44.5
Q ss_pred hhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----H-HHHHHHHHHHHhh
Q 023690 44 RVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-----E-NEALTNTVRKLQR 110 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~-----E-~~~La~TvKkL~r 110 (278)
|+..|+.+...|-.+|++- ......|-++++.|+..+. ..+....++...|.+ | +..+..-++.|..
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4555666666666655532 1334445555555555444 444444444433322 1 2334556788888
Q ss_pred hHHHHHH-HHHHHHhh
Q 023690 111 DVSKLEV-FRKTLVQS 125 (278)
Q Consensus 111 DvaKLE~-FKk~LmqS 125 (278)
.+.+||. ++.-|+-+
T Consensus 84 ~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 84 RKEALEKELERHLLPK 99 (354)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8888885 66655544
No 189
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=64.48 E-value=48 Score=27.70 Aligned_cols=78 Identities=18% Similarity=0.153 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
-+.+.-.++-.+..|..+....|.=|..|=.-- .-.++-.+|+..|+.++. .+.++..+..+|++.|-..|.
T Consensus 52 ~~~f~~~~~ela~dli~kakqIe~LIdsLPg~~----~seeeQ~~ri~~Le~E~~----~~~~el~~~v~eae~ll~~v~ 123 (151)
T 1yke_B 52 PEEFSNTIDELSTDIILKTRQINKLIDSLPGVD----VSAEEQLRKIDMLQKKLV----EVEDEKIEAIKKKEKLLRHVD 123 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSS----SCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555554444443211 000111233333343333 444444444455555555555
Q ss_pred HHhhhH
Q 023690 107 KLQRDV 112 (278)
Q Consensus 107 kL~rDv 112 (278)
.+-+++
T Consensus 124 ~~l~~i 129 (151)
T 1yke_B 124 SLIEDF 129 (151)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 444444
No 190
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=64.14 E-value=10 Score=24.98 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
+.+.++..++|..+|..|.+.|.+|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44555666667777777776666553
No 191
>2odv_A Plectin 1, HD1; plakin domain, spectrin repeat, cytoskeleton, hemidesmosomes epidermolysis bullosa, structural protein; 2.05A {Homo sapiens} PDB: 2odu_A
Probab=63.16 E-value=34 Score=30.22 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 023690 30 LDVARKITSIAISTRVSDLESEHSAL--RSQLAEK-DSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~L--R~~LaEK-d~~i~~Lq~r~s~le~~l~-----~rL~~a~ee~~kL~~E~~~L 101 (278)
|+-+-.-.-.|...|-..|..|+.+| -+.|++| ++.+...+..++..+..|+ .....+.+.-..+...-..+
T Consensus 98 i~~~W~~Le~ae~eRe~aL~~el~RlerLe~La~kf~rka~~~e~~L~~~~~~L~~d~~~l~~~~a~k~~e~ie~dL~~~ 177 (235)
T 2odv_A 98 VEKEWGKLHVAILEREKQLRSEFERLEALQRIVTKLQMEAGLAEEQLNQADALLQSDVRLLAAGKVPQRAGEVERDLDKA 177 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 023690 102 TNTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 102 a~TvKkL~rDvaKLE~FK 119 (278)
...|+.|..++..|+..+
T Consensus 178 e~~i~~l~~~a~~L~~~~ 195 (235)
T 2odv_A 178 DSMIRLLFNDVQTLKDGR 195 (235)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhCC
No 192
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=63.13 E-value=1.1e+02 Score=29.87 Aligned_cols=41 Identities=5% Similarity=0.092 Sum_probs=20.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|...+..||..+..|-++-.+--+.|..|+..+...|.++.
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~ 138 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRK 138 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccc
Confidence 44445555555555544444444445555555555555444
No 193
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=62.92 E-value=10 Score=24.62 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 93 RLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.|.+|-.+|..-|.+|+.-|.+||.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666666666666666653
No 194
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=62.20 E-value=37 Score=26.57 Aligned_cols=28 Identities=18% Similarity=0.107 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
.+.+....+.+.|...+.|+..-|+.||
T Consensus 62 ~~L~e~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 62 PQIAETLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444455555555555555555554
No 195
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=62.16 E-value=84 Score=30.81 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=27.3
Q ss_pred HHHHHH----HHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 89 ADKERL----SKE-NEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 89 ee~~kL----~~E-~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
++...| .+| -..|...++.|...+..||.=-..++.+|-+
T Consensus 99 ~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 143 (484)
T 3lss_A 99 EQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGN 143 (484)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445556 566 7888888888888888888877778887754
No 196
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=62.12 E-value=10 Score=25.18 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|+.+..+..+.|..+|..|.+.|.+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 455666777777777777777665553
No 197
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=62.03 E-value=40 Score=26.81 Aligned_cols=6 Identities=33% Similarity=0.506 Sum_probs=2.2
Q ss_pred hHHHHH
Q 023690 48 LESEHS 53 (278)
Q Consensus 48 LE~E~~ 53 (278)
|+.|+.
T Consensus 39 l~leld 44 (119)
T 3ol1_A 39 VEVERD 44 (119)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 198
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=61.92 E-value=21 Score=25.10 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.+|-+|.....+|...+-.|.-++++||+
T Consensus 17 kdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 17 KDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 34445555555666666666666666664
No 199
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=61.26 E-value=25 Score=34.10 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=21.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
-|...|..||..+..|-..-.+-.+.|..|+.-+
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~ 68 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTY 68 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Confidence 4556677777777766666666666666665543
No 200
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=61.00 E-value=15 Score=27.44 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+..|+.|...|.+||++|++|+.++-.+..-|.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445677777788888888888877766655443
No 201
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=60.82 E-value=33 Score=24.55 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 62 Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (278)
|-..+.+|+.++..|+..-. ....++..|.+|+..|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~----~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNE----ALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44455555555555554333 3444444555554444
No 202
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=60.69 E-value=41 Score=29.20 Aligned_cols=50 Identities=14% Similarity=0.218 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL 108 (278)
+.-.|+-+....+.+..||+.+..||..|- ...+++..+.+| |.+|+.-|
T Consensus 123 aE~ireli~~AertV~kLqkeiD~LEDeL~----~eKek~k~i~~e---LDqTl~eL 172 (175)
T 3mud_A 123 AEVIRELICYCLDTTAKNEKSIDDLEEKVA----HAKEENLNMHQM---LDQTLLEL 172 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH---HHHHHHHh
Confidence 344555555566666666666666664443 555555555555 44444444
No 203
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=60.47 E-value=13 Score=26.87 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
-|..++.+|+.++..| ..||..|...|..|...|
T Consensus 27 RK~~~~~~Le~~v~~L------------------~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEEL------------------LSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Confidence 4556666666655543 455555555555555444
No 204
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=59.88 E-value=12 Score=30.90 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
+..|+..+..|...|..++..|.+|++++..+|
T Consensus 5 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 5 IEALSSKVQQLERSIGLKDLAMADLEQKVLEME 37 (192)
T ss_dssp THHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555666666777777777777776665544
No 205
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=59.86 E-value=18 Score=24.17 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=5.6
Q ss_pred hhhhhHHHHHHHH
Q 023690 44 RVSDLESEHSALR 56 (278)
Q Consensus 44 RVs~LE~E~~~LR 56 (278)
||++||..+..|-
T Consensus 2 RMnQLE~KVEeLl 14 (36)
T 1kd8_B 2 KVKQLKAKVEELK 14 (36)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4444444444433
No 206
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=59.74 E-value=28 Score=32.51 Aligned_cols=10 Identities=10% Similarity=-0.024 Sum_probs=6.9
Q ss_pred ccccCCCCcc
Q 023690 244 LSSVHSSHSS 253 (278)
Q Consensus 244 ~~~~~ss~~S 253 (278)
-|||..=+.+
T Consensus 253 GWWy~~C~~s 262 (323)
T 1lwu_C 253 GWWMNRCHAG 262 (323)
T ss_dssp CBCCSSSCSE
T ss_pred CCccCCCCCC
Confidence 4688876666
No 207
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=59.37 E-value=1.1e+02 Score=29.24 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HH----
Q 023690 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLS---KE---- 97 (278)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~---~E---- 97 (278)
|..++....-.-++..|+.++..|-.+|++- ......|-++++.|+..+. ..++...++...|. +|
T Consensus 14 ~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D~ 93 (365)
T 1gqe_A 14 LTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDE 93 (365)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 3444444444445556666666666666542 2334455555555555555 44444444443332 22
Q ss_pred --HHHHHHHHHHHhhhHHHHHH
Q 023690 98 --NEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 98 --~~~La~TvKkL~rDvaKLE~ 117 (278)
+..+...++.|...+.+||.
T Consensus 94 e~~~~a~~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 94 ETFNEAVAELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 13345667778888888774
No 208
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=59.30 E-value=6.7 Score=29.76 Aligned_cols=45 Identities=22% Similarity=0.325 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 69 LQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 69 Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
|.++++.+...+. +-|.++...+.+|.+.++-|-.-|++|.|+-.
T Consensus 20 l~~~L~~~~k~~~Hl~~LL~EsEatnarL~eq~~lLK~EIRRlERnqe 67 (71)
T 3bbp_D 20 LVQKLSSTTKSADHLNGLLRETEATNAILMEQIKLLKSEIRRLERNQE 67 (71)
T ss_dssp ---------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhHh
Confidence 3334444443333 66778888999999999999999999988643
No 209
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=59.30 E-value=78 Score=27.21 Aligned_cols=86 Identities=10% Similarity=0.226 Sum_probs=45.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER----LSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~k----L~~E~~~La~TvKkL~rDvaKLE 116 (278)
+...|..+|.++..|+..|..=-.....+-+-...+..+. ..+...+.+... +...-..+...+++...-+..|+
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~-~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~ 97 (265)
T 2q12_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAAT-HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELS 97 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4566788888888888877754444433333322222222 222233333111 11122334566777777777778
Q ss_pred HHHHHHHhhcc
Q 023690 117 VFRKTLVQSLK 127 (278)
Q Consensus 117 ~FKk~LmqSLq 127 (278)
+++..|++.++
T Consensus 98 ~~~~~l~~~~~ 108 (265)
T 2q12_A 98 SCHAVLSTQLA 108 (265)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88777776654
No 210
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=59.29 E-value=5.4 Score=39.53 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=17.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
-.+..|+-.+|.|....+..|.+-.+.+..|+++...+|.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~ 377 (575)
T 2i1j_A 338 QEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQA 377 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3455666667777777666666666666666555444443
No 211
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=59.11 E-value=50 Score=25.34 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l 80 (278)
|--.....|.+++..++.++
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433
No 212
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=58.91 E-value=21 Score=29.79 Aligned_cols=40 Identities=33% Similarity=0.380 Sum_probs=13.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.++..+++.+|+|...|++++. -.|..|+=++.++|.+|.
T Consensus 33 ~~~e~~~~~~~~Elee~kqq~~---~~~d~L~lQ~esmeaalk 72 (130)
T 3cl3_D 33 RAASEQARQLESEREALQQQHS---VQVDQLRMQGQSVEAALR 72 (130)
T ss_dssp ------------------CTTT---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665443 234556667777887776
No 213
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=58.78 E-value=14 Score=28.04 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023690 90 DKERLSKENEALTNTVRKL 108 (278)
Q Consensus 90 e~~kL~~E~~~La~TvKkL 108 (278)
+|..|..+...|..-+..|
T Consensus 51 eN~~L~~~v~~L~~E~~~L 69 (78)
T 1gu4_A 51 ENERLQKKVEQLSRELSTL 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 214
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=58.76 E-value=26 Score=32.21 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=11.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAE 61 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaE 61 (278)
+...|..+|.++..|+..|..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~k 62 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQ 62 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666655543
No 215
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=58.67 E-value=71 Score=26.68 Aligned_cols=56 Identities=13% Similarity=0.188 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
+.=+++|...+.++...+..|++-....+. ...+..+..+|.....+.|+.+.++|
T Consensus 85 ~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~--------~l~e~e~~leeyK~Kl~rv~~vkkeL 140 (152)
T 4fla_A 85 AEYNGRLAAELEDRRQLARMLVEYTQNQKD--------VLSEKEKKLEEYKQKLARVTQVRKEL 140 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555555555555433333332 22333444445555555555555444
No 216
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.46 E-value=21 Score=25.18 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 50 SEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
.|+..||..++|=...+.+|++++..|.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~ 46 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLK 46 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555554444444444444444333
No 217
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=58.12 E-value=40 Score=26.40 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
..+..+.+.....+.+|.-++-||+.+=-.|
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~ 88 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEA 88 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666666777777777777776664433
No 218
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=58.04 E-value=54 Score=24.24 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
|..++.++.+|-+-|++|.+-++.|++.+.+|-+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 3355566666666677777766766666666643
No 219
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=57.67 E-value=29 Score=27.10 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~ 103 (278)
..+.+|+..+..|..++. ...+++..+.+|++.+-.
T Consensus 48 ~q~~~LE~e~~~L~~e~~----~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVE----QLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 344445444444444443 444444455555544443
No 220
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=57.44 E-value=11 Score=31.49 Aligned_cols=86 Identities=14% Similarity=0.208 Sum_probs=53.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~----~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
.++.+.++..+.|+.+|...|.+=...-.+.+.....++.+|- +-..+|+...+.-..++..+...+.+|.+.+.-
T Consensus 35 ~~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e 114 (135)
T 2e7s_A 35 NTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLRE 114 (135)
T ss_dssp HHHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566667777888888777666666666677777777776 555566666666666777777777777666554
Q ss_pred HHHHHHHHHhhccc
Q 023690 115 LEVFRKTLVQSLKD 128 (278)
Q Consensus 115 LE~FKk~LmqSLq~ 128 (278)
- ..|+.+||+
T Consensus 115 ~----e~ll~~lq~ 124 (135)
T 2e7s_A 115 K----DMLLDTLTL 124 (135)
T ss_dssp H----HHCC-----
T ss_pred H----HHHHHHHHH
Confidence 3 444555544
No 221
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=57.39 E-value=26 Score=26.40 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
+.|.+|+.|++-.|..+. +..+...+.+++.+.|...++.|...+..++
T Consensus 14 ~Ri~~LE~klAfqE~tIe----eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~ 62 (78)
T 3efg_A 14 ARLVELETRLSFQEQALT----ELSEALADARLTGARNAELIRHLLEDLGKVR 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445555555555554443 6666777777777788877777777666655
No 222
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=57.24 E-value=62 Score=25.04 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
.|.+|+-||+.+|.+=. -+|+..-++...|++.-..=..-++.|.
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 34455555555554432 5555665666555554443333444443
No 223
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=57.24 E-value=74 Score=25.58 Aligned_cols=46 Identities=9% Similarity=0.182 Sum_probs=25.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKE 92 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~ 92 (278)
.|-.|+...+.++.+=...+.+|+..+..||.+=. .||+.+.-=++
T Consensus 8 al~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLcQ 56 (106)
T 4e61_A 8 AIQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILVH 56 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555666666666655433 66666554443
No 224
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=57.17 E-value=66 Score=24.93 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
.+.........|..|...+-..+....++...|=+.|-.|
T Consensus 38 e~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 38 EKDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555566666666666666666666666666555
No 225
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.11 E-value=17 Score=24.37 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
|+.+..+..++|..+|..|.+.|.+|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455666677788888888877776654
No 226
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=56.83 E-value=67 Score=24.96 Aligned_cols=36 Identities=6% Similarity=0.144 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~ 121 (278)
...+....+..+-+..-..+..-.+++.+||.+|..
T Consensus 85 ~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~er 120 (150)
T 3ajw_A 85 QHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQDR 120 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555556666666666677777777777643
No 227
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=56.69 E-value=23 Score=27.55 Aligned_cols=33 Identities=27% Similarity=0.385 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
..++++|.+|.++...|..-+..|...+..|..
T Consensus 42 ~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 42 YEALKENEKLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666666666666665555555555555533
No 228
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=56.36 E-value=82 Score=30.50 Aligned_cols=28 Identities=7% Similarity=0.102 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 54 ALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.+.+.|.++...+.+.+..|.++-.+|.
T Consensus 92 ~~~~~lk~~~~q~~dndn~~~e~s~eLe 119 (390)
T 1deq_A 92 NIVELMRGDFAKANNNDNTFKQINEDLR 119 (390)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 3334444444444444444444444443
No 229
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=56.32 E-value=40 Score=28.79 Aligned_cols=35 Identities=23% Similarity=0.256 Sum_probs=28.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
.-+..||.|-.+++..+..|.+.+++|..+...+.
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vafk 39 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAFK 39 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999887765544
No 230
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=56.30 E-value=53 Score=28.00 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhhhHH-HHHHHHHHHHhh
Q 023690 98 NEALTNTVRKLQRDVS-KLEVFRKTLVQS 125 (278)
Q Consensus 98 ~~~La~TvKkL~rDva-KLE~FKk~LmqS 125 (278)
+..|.--+..|...|. ++|.||..|.--
T Consensus 134 r~~L~Py~eelr~kl~~~~eeLr~~l~P~ 162 (191)
T 1nfn_A 134 RVRLASHLRKLRKRLLRDADDLQKRLAVY 162 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444443333 677777776433
No 231
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=56.15 E-value=71 Score=24.98 Aligned_cols=39 Identities=13% Similarity=0.267 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
-..-|.+..+.|...+++|.+++.++..--+++...|++
T Consensus 89 A~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 89 AMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777888888999999998888887877777654
No 232
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=56.09 E-value=29 Score=24.62 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
+++.++..||.+|+ .+.++.+....|-..|-|.=-+|.-++
T Consensus 4 ~~q~~i~~le~el~----~~r~e~~~q~~eYq~LlniK~~Le~EI 44 (59)
T 1gk6_A 4 QLEDKVEELLSKNY----HLENEVARLKKLVGDLLNVKMALDIEI 44 (59)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 45555555555555 445555555555555555444444444
No 233
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=56.02 E-value=52 Score=23.89 Aligned_cols=41 Identities=15% Similarity=0.371 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
..++.+.|.+|+..|..++..=++-=-+||.+=|.++++.+
T Consensus 15 LkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~~ 55 (56)
T 2w6b_A 15 LKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34445555555555555555555555555555555555443
No 234
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=56.01 E-value=48 Score=30.10 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=13.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAE 61 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaE 61 (278)
+-..|..+|.++..|+..|.+
T Consensus 19 FR~~l~~~E~~~~~l~~~l~k 39 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQ 39 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777776664
No 235
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=55.98 E-value=50 Score=23.24 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (278)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~ 79 (278)
+...|.+. ...-|..+..+++.+.++...=...|+.|+.++..|+..
T Consensus 16 ~~e~iv~~-l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~~ 62 (66)
T 3m0a_A 16 TFENIVCV-LNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLERS 62 (66)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 34455544 445555555555555554444455555566656555543
No 236
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=55.70 E-value=30 Score=26.76 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHH
Q 023690 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL-SKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 60 aEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL-~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.+|...|.+++..+..++.-|. +-.-|...+ ...|..+.+.|+.-.+||.+|+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~----qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLE----QMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655555554443 222222111 23577788888888888887754
No 237
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=54.93 E-value=83 Score=25.44 Aligned_cols=15 Identities=20% Similarity=0.104 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 023690 66 IAELQSQIESIYSSL 80 (278)
Q Consensus 66 i~~Lq~r~s~le~~l 80 (278)
|..|..++..-|..|
T Consensus 47 V~~L~~~~q~sE~~L 61 (112)
T 1x79_B 47 ISALVLRAQASEILL 61 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444333
No 238
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=54.46 E-value=33 Score=26.94 Aligned_cols=37 Identities=22% Similarity=0.315 Sum_probs=24.2
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
+..|+..|+..+..|..++.++...|..+++.+..+.
T Consensus 93 l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 93 IKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566777777777777777776666666666555443
No 239
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=54.33 E-value=67 Score=24.21 Aligned_cols=27 Identities=7% Similarity=0.139 Sum_probs=13.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq 70 (278)
+.+.|..++..|..++..+...+.+++
T Consensus 14 ~~~~l~~~~~~l~~q~~~l~~~~~e~~ 40 (117)
T 2zqm_A 14 QLESYQQQLQLVVQQKQKVQLELTEAK 40 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555444444443
No 240
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=54.28 E-value=96 Score=25.94 Aligned_cols=45 Identities=18% Similarity=0.303 Sum_probs=20.7
Q ss_pred HHhcCCCCchhhHHHHHHHHH---------------------HHHHHhhhhhHHHHHHHHHHHHHH
Q 023690 18 VLQVLPSDPFEQLDVARKITS---------------------IAISTRVSDLESEHSALRSQLAEK 62 (278)
Q Consensus 18 il~vLP~DP~EQLdlarkIts---------------------~A~atRVs~LE~E~~~LR~~LaEK 62 (278)
++.++|.+||+-|.=.-..+. ..+..+|..+|.++..|+.++.++
T Consensus 7 ~~~lf~~s~f~~l~~~a~~~~~~a~~L~~~~~~~~~~d~~~~~~~~~~i~~~E~~aD~l~~~I~~~ 72 (227)
T 2olt_A 7 ILGVFAKSPIKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLT 72 (227)
T ss_dssp -------CTTHHHHHHHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788999887653333221 134455666666666666555443
No 241
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=54.23 E-value=1.3e+02 Score=27.29 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
|..++..|.+-+..|..-++.+..+|.-|- .++....-+...|...-...+..+-.|..|.
T Consensus 86 I~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~~Dy 149 (242)
T 3c9i_A 86 IKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQADY 149 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHB
T ss_pred hhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhhhhh
Confidence 444555555555544433333333333333 3334566666777777777888888888774
No 242
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=53.71 E-value=59 Score=31.01 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=12.8
Q ss_pred HhhhhhHHHHHHHHHHH--HHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQL--AEKDSRIAELQSQ 72 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~L--aEKd~~i~~Lq~r 72 (278)
.++..|...+..|+..| ..+...+.+|+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~l~~~~~r~~el~~~ 40 (365)
T 1gqe_A 9 NRIQDLTERSDVLRGYLDYDAKKERLEEVNAE 40 (365)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34444444444444332 2334444444433
No 243
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=53.70 E-value=13 Score=27.35 Aligned_cols=12 Identities=50% Similarity=0.595 Sum_probs=5.4
Q ss_pred hhhhhHHHHHHH
Q 023690 44 RVSDLESEHSAL 55 (278)
Q Consensus 44 RVs~LE~E~~~L 55 (278)
||..||..+..|
T Consensus 3 rvkaleekvkal 14 (67)
T 1lq7_A 3 RVKALEEKVKAL 14 (67)
T ss_dssp SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 444444444433
No 244
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=53.59 E-value=20 Score=28.36 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=20.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
+..|+..|..|+..|.++=.+=|++|..++..+
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l 36 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQL 36 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777776666666666665443
No 245
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=53.36 E-value=18 Score=30.00 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
..|++..+.|.+-|-+|..+|.+||
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666654
No 246
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.98 E-value=22 Score=33.98 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
||+....+..-|.-|++-|.+..+.|++++.+++.
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555566666666666655543
No 247
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=52.82 E-value=65 Score=28.86 Aligned_cols=50 Identities=20% Similarity=0.280 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhHHHHHHHH
Q 023690 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKE-NEALTNTVRKLQRDVSKLEVFR 119 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E-~~~La~TvKkL~rDvaKLE~FK 119 (278)
+.+|++++..++..+. ...++..++.++ ...|..--..|....++.+++.
T Consensus 228 l~~l~~~i~~l~~~l~----~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 278 (357)
T 3rrk_A 228 AARMKERARLAPEELV----GIREEVARLSRESGEALIALWTRAKDEVARYKAVA 278 (357)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444333 334444444444 4455555555556666666554
No 248
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=52.69 E-value=59 Score=23.07 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=28.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.||+||..|+..+.+=.+.+.+|-.=+..|-.+++
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~ 35 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL 35 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38999999999998888888888777776666665
No 249
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=52.23 E-value=47 Score=33.69 Aligned_cols=38 Identities=8% Similarity=0.186 Sum_probs=21.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
.+-..+|..+..||..+.+.++.|..|++.-..++-.+
T Consensus 13 ~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~y 50 (596)
T 1bg1_A 13 EKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNY 50 (596)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44555666666666666666666655555555444443
No 250
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=52.14 E-value=46 Score=33.22 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023690 59 LAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 59 LaEKd~~i~~Lq~r~s~le~~l 80 (278)
|.+|+..|++=+.|...+|.+.
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~ 503 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASA 503 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444
No 251
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=52.09 E-value=76 Score=24.17 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (278)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~ 79 (278)
+-.++..-.-.-|.||++|+..++=|..-.+-|.+.+-+|.-+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIE 61 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIE 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHH
Confidence 4556666666778889999998888887777777777665543
No 252
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=52.01 E-value=33 Score=25.26 Aligned_cols=20 Identities=15% Similarity=0.408 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 023690 92 ERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 92 ~kL~~E~~~La~TvKkL~rD 111 (278)
..|++++..|...+..|.+.
T Consensus 50 ~~L~~~~~~l~~e~~~L~~~ 69 (83)
T 1nkp_B 50 QYMRRKNHTHQQDIDDLKRQ 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 253
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=51.67 E-value=1.2e+02 Score=26.44 Aligned_cols=73 Identities=15% Similarity=0.242 Sum_probs=44.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG-QAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~-~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
++..++..|..|..+|.....+=...+.++-+--..+|.+|-.|.. ..++.+.|+-+-.+.|.+.++.+..+.
T Consensus 136 ~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 4445555555555555555544445555555555556666664433 445666777777778888888877664
No 254
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.66 E-value=90 Score=24.88 Aligned_cols=86 Identities=22% Similarity=0.315 Sum_probs=47.3
Q ss_pred HHHHHHHHH--HHHHHhhhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH-----
Q 023690 30 LDVARKITS--IAISTRVSDLESEH---------SALRSQLAEKDSRIAELQSQIESIYSSLSDKL----GQAQA----- 89 (278)
Q Consensus 30 LdlarkIts--~A~atRVs~LE~E~---------~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL----~~a~e----- 89 (278)
-+|...|.+ .-|-+-|+.|+..+ ..||.+|.+..+.+.+|-+..+..=..|. .+ ....+
T Consensus 13 ~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~-~~~~~~~~~~~r~~k~ 91 (130)
T 2dnx_A 13 SSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELG-SLPLPLSTSEQRQQRL 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HSCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccchHHHHHH
Confidence 446666653 34556688888875 66788888777777776655554444333 11 00111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 90 DKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
..+||.+|-....+.-.+++|.++.-|
T Consensus 92 q~~KL~~dF~~~L~~FQ~~Qr~~aeke 118 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQAVQRRVSEKE 118 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 134455555555555555555554443
No 255
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=51.54 E-value=78 Score=24.13 Aligned_cols=19 Identities=5% Similarity=0.149 Sum_probs=9.6
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQL 59 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L 59 (278)
|-..|..+..++..|+..+
T Consensus 10 F~~~v~~I~~~i~~i~~~v 28 (127)
T 1ez3_A 10 FFEQVEEIRGFIDKIAENV 28 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444
No 256
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=51.19 E-value=1.2e+02 Score=29.78 Aligned_cols=70 Identities=13% Similarity=0.117 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 023690 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS-----------KENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 58 ~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~-----------~E~~~La~TvKkL~rDvaKLE~FKk~LmqSL 126 (278)
++.+-|+...+|+.++..|...-. ..-.++.++. ++...|...++.|..++..||.--+.+-..|
T Consensus 71 ~~~~ld~~~r~~~~~~~~l~~~rn----~~sk~i~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l 146 (501)
T 1wle_A 71 GIISTWQELRQLREQIRSLEEEKE----AVTEAVRALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQF 146 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555554433 2222233222 2445777888888888888877777776666
Q ss_pred ccccC
Q 023690 127 KDDED 131 (278)
Q Consensus 127 q~d~~ 131 (278)
++.-.
T Consensus 147 ~~~l~ 151 (501)
T 1wle_A 147 YLRAL 151 (501)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 65544
No 257
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=51.12 E-value=25 Score=24.74 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.+..+|..||+.|...+..|...++.|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666665555444
No 258
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=50.91 E-value=90 Score=29.43 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=35.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQ--AQADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~La----EKd~~i~~Lq~r~s~le~~l~~rL~~--a~ee~~kL~~E~~~La~TvKkL 108 (278)
..+++.++..+-..+..+|..+. ..-..|..|=++|..|..++. +... .-+.-+.|..+||.|...+-+|
T Consensus 73 a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~-~~~~~~~g~~~ndLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 73 AEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS-RMTGVGAGASPNDLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC--------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCchHhHHHHHHHHHHHHhh
Confidence 56677777777666666665554 233344445555555555443 1111 1234456667777666554443
No 259
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=50.89 E-value=32 Score=23.02 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=6.3
Q ss_pred hhhhhHHHHHHH
Q 023690 44 RVSDLESEHSAL 55 (278)
Q Consensus 44 RVs~LE~E~~~L 55 (278)
||++||..+..|
T Consensus 2 RMnQLE~kVEeL 13 (36)
T 1kd8_A 2 EVKQLEAEVEEI 13 (36)
T ss_dssp CCHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 555555555443
No 260
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=50.71 E-value=21 Score=23.47 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=4.7
Q ss_pred hhhhhHHHHHHH
Q 023690 44 RVSDLESEHSAL 55 (278)
Q Consensus 44 RVs~LE~E~~~L 55 (278)
||++||..+..|
T Consensus 1 RM~QLE~kVEeL 12 (33)
T 3m48_A 1 RMAQLEAKVEEL 12 (33)
T ss_dssp --CHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 444555444444
No 261
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=50.56 E-value=29 Score=26.99 Aligned_cols=34 Identities=24% Similarity=0.340 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
..++++|.+|.++...+.+-+-.|......|..+
T Consensus 34 ~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 34 YEALKENEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666667766666666555555555444444433
No 262
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=50.41 E-value=1e+02 Score=25.10 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=16.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
.+...-..|..+...|...+.+......+|+.++..|+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le 63 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALE 63 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444444555555554444443333344444444443
No 263
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=50.10 E-value=34 Score=31.29 Aligned_cols=47 Identities=13% Similarity=0.265 Sum_probs=21.5
Q ss_pred HHHHHHHHHhhhh---hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 023690 35 KITSIAISTRVSD---LESEHSALRSQLAE----KDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 35 kIts~A~atRVs~---LE~E~~~LR~~LaE----Kd~~i~~Lq~r~s~le~~l~ 81 (278)
.=+..+|..=+.. -|.+...+.+++.+ +...|+.|+++...|+.++.
T Consensus 149 ~y~~~~Y~~fl~~~d~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~ 202 (315)
T 2ve7_A 149 DYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIA 202 (315)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555544433 23333344444433 24455555555555555543
No 264
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=49.96 E-value=65 Score=22.73 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=26.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+-..++.||+++..+|+.++.--+...+|=+=-..||.++.
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34567888888888888877665555555444444554443
No 265
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=49.83 E-value=87 Score=24.16 Aligned_cols=78 Identities=22% Similarity=0.211 Sum_probs=43.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAEL---QS---QIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~L---q~---r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
++-..-....|.|...|...+..|-..|..+ ++ .+..+|. .|.+|.+=..++.-|..++-.++|. .=.
T Consensus 11 ~~mSelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~----~ldEA~eLl~qMelE~r~~p~s~R~--~~~ 84 (102)
T 2qyw_A 11 AASSEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDE----KQQEANETLAEMEEELRYAPLTFRN--PMM 84 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHTSCHHHHH--HHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCHHHHH--HHH
Confidence 3334556666777666666666665555333 22 2333333 3336666666666676666555554 334
Q ss_pred HHHHHHHHHH
Q 023690 113 SKLEVFRKTL 122 (278)
Q Consensus 113 aKLE~FKk~L 122 (278)
+||..+|+.|
T Consensus 85 ~klr~Yk~dL 94 (102)
T 2qyw_A 85 SKLRNYRKDL 94 (102)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666666655
No 266
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=49.66 E-value=84 Score=23.96 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=18.2
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.|+..+|.+-..|..++..=...+.+=+.+-..+..+|.
T Consensus 13 ~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 13 QKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444444444444444444443
No 267
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=49.62 E-value=30 Score=29.07 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
-+|..|.+.++||.+-|.++-.+++-.+-
T Consensus 59 kql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 59 KEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 56678888888988888888777665544
No 268
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=49.57 E-value=75 Score=25.62 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
..+-..-|.+..+.|...+++|..++++++.--.++...|++
T Consensus 96 ~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~ 137 (151)
T 2zdi_C 96 IDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQE 137 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566667777777788888777777666666555543
No 269
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=49.53 E-value=92 Score=24.62 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 023690 63 DSRIAELQSQIESIYS 78 (278)
Q Consensus 63 d~~i~~Lq~r~s~le~ 78 (278)
+.+|.+|++++..||.
T Consensus 53 ~~EI~~L~~eI~~LE~ 68 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEK 68 (96)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 270
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=49.42 E-value=21 Score=33.94 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
.+|+.+.+.+-.++ ++++..-++...|..|-..|.+.+|.|...+..+|.=-..++.+|-+-
T Consensus 47 ~~l~~~~n~~sk~i-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 47 EALRSERNKLSKEI-GKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNL 108 (425)
T ss_dssp HHHHHHHHHHHHHT-TGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHH-HHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34444444443333 233333345567778888888888888888888888777888877654
No 271
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=49.41 E-value=26 Score=25.25 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=9.9
Q ss_pred hhhhhHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLA 60 (278)
Q Consensus 44 RVs~LE~E~~~LR~~La 60 (278)
++..||.++..|...-.
T Consensus 31 ~~~~Le~~v~~L~~eN~ 47 (63)
T 2dgc_A 31 RMKQLEDKVEELLSKNY 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 46666666666654333
No 272
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=49.30 E-value=87 Score=23.99 Aligned_cols=46 Identities=20% Similarity=0.352 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 61 EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
|+.+.+..|+.-+.+.|..+- ++|....+++..+..+ |-.|+.-|+
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee---LDqTL~ELn 75 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM---LDQTLLELN 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHhh
Confidence 444445555555555555444 4555566666666655 445555443
No 273
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=49.16 E-value=80 Score=23.54 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|+.|...++..+.+.+..+.+++..+...-.+++
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq 36 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQ 36 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555444443333333
No 274
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=49.11 E-value=1e+02 Score=25.73 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=33.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
...+..|+.+.|.+++.+..-+.| ++--.++=.|++....+|.
T Consensus 51 Kk~ll~RLkRIeGQvrGI~rMIEe-dr~C~DIL~QlaAVrsAL~ 93 (136)
T 4adz_A 51 KAEHLKRLRRIEGQIRGLQRMVDE-DVYCIDILTQVSASTKALQ 93 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 567889999999999999888764 5555555567777777776
No 275
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=49.06 E-value=23 Score=22.91 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023690 59 LAEKDSRIAELQSQIESIYSS 79 (278)
Q Consensus 59 LaEKd~~i~~Lq~r~s~le~~ 79 (278)
++.-+.+.+.|+..+.+||.+
T Consensus 10 vaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 10 VAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHh
Confidence 334445555555555555543
No 276
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=48.97 E-value=36 Score=28.17 Aligned_cols=51 Identities=25% Similarity=0.419 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhHHHH
Q 023690 65 RIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTN-TVRKLQRDVSKL 115 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~--------~rL~~a~ee~~kL~~E~~~La~-TvKkL~rDvaKL 115 (278)
+|..|.+|+..+...+. ..+.+..+|+++|.+|..+|-+ +..+|+.+-.+|
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~~~l 70 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQKL 70 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 44555555555555444 5556666677777777666654 334444444443
No 277
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=48.88 E-value=43 Score=25.71 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 86 QAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
.++++|.+|-++...+..-+.+|..
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~Lke 55 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLRK 55 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444444444333
No 278
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=48.75 E-value=55 Score=26.11 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=19.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRI 66 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i 66 (278)
.|+..|..+.|.|+..||.+++|....+
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4666777788888888887776655444
No 279
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=48.58 E-value=13 Score=23.31 Aligned_cols=18 Identities=39% Similarity=0.649 Sum_probs=13.7
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 023690 100 ALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 100 ~La~TvKkL~rDvaKLE~ 117 (278)
.|-..||+|.++|-|||.
T Consensus 5 kldanvkrlekevgkleg 22 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhh
Confidence 466778888888888874
No 280
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=48.55 E-value=29 Score=30.53 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHhhc
Q 023690 111 DVSKLEVFRKTLVQSL 126 (278)
Q Consensus 111 DvaKLE~FKk~LmqSL 126 (278)
.+++|+.+|+.||+.+
T Consensus 392 ~~~~L~~lk~~LL~k~ 407 (412)
T 3okg_A 392 TEAELKRLEQAILDKA 407 (412)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888888888764
No 281
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=48.44 E-value=80 Score=23.34 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La 102 (278)
--.++..|+--++.|..|=+=-+.|-.+| +....+..+|+.||..|.
T Consensus 15 ylevK~ALaaSeAkiQQLmkVN~~ls~El----r~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 15 YLELKKALATSEAKVQQLMKVNSSLSDEL----RKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhHhhhHHH----HHHHHHHHHHHhhhhhhc
Confidence 33456666666666666643333333333 355556666666666653
No 282
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=48.34 E-value=1e+02 Score=31.18 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=18.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (278)
.+..+|..+|.++..|.+.-.+=|=..++++.+
T Consensus 13 ~l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~ 45 (575)
T 1bf5_A 13 NVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 45 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 455556666666666655555555555555433
No 283
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=47.95 E-value=79 Score=25.91 Aligned_cols=19 Identities=5% Similarity=0.207 Sum_probs=9.2
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQL 59 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L 59 (278)
|-..|..+..++..|+..+
T Consensus 41 F~~~v~~I~~~i~~i~~~v 59 (180)
T 1s94_A 41 FFEQVEEIRAMIDKISDNV 59 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444433
No 284
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=47.92 E-value=33 Score=28.34 Aligned_cols=43 Identities=35% Similarity=0.512 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHH------HHHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHH
Q 023690 27 FEQLDVARKITS------IAISTRVSDLESE-------HSALRSQLAEKDSRIAEL 69 (278)
Q Consensus 27 ~EQLdlarkIts------~A~atRVs~LE~E-------~~~LR~~LaEKd~~i~~L 69 (278)
..||.||-.|.. |----|+..|..+ ++..|.++.|||+.|..|
T Consensus 73 ekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 128 (142)
T 1pl5_A 73 EKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 347888877762 2223345555544 234456666666666544
No 285
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=47.77 E-value=25 Score=25.06 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 91 KERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.+.|...|.+|..-+-.|.+|++.||.
T Consensus 26 varlendnanlekdianlekdianler 52 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777764
No 286
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=47.74 E-value=66 Score=30.89 Aligned_cols=32 Identities=16% Similarity=0.188 Sum_probs=20.3
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 023690 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~ 130 (278)
..|...++.|..++..||.--+.|-..|++--
T Consensus 72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 72 DELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777666666666655443
No 287
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=47.61 E-value=1e+02 Score=26.96 Aligned_cols=11 Identities=9% Similarity=0.217 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 023690 50 SEHSALRSQLA 60 (278)
Q Consensus 50 ~E~~~LR~~La 60 (278)
.++..++.+|.
T Consensus 69 ~~~~~~~a~l~ 79 (341)
T 3fpp_A 69 NQIKEVEATLM 79 (341)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 288
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=47.21 E-value=25 Score=28.42 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+..+...+|.+|+..|...+++|.+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666665554
No 289
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=46.74 E-value=32 Score=27.47 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=20.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
|-.|+-.||.|-=.|-.++..++-.|.+|..||..|
T Consensus 54 Lh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 54 LWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 344555555555555555555555555555555544
No 290
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=46.29 E-value=68 Score=21.94 Aligned_cols=24 Identities=13% Similarity=0.200 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 86 QAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
.+.....++.++-......|.+|+
T Consensus 30 ~~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 30 KAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444443
No 291
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=46.10 E-value=25 Score=31.50 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 87 AQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
..-+..+|...-..++-+|..|.+-|..||
T Consensus 9 ~st~v~NlkssVS~~~l~ls~L~~Rv~~le 38 (211)
T 2vrs_A 9 NSTAISNLKSDISSNGLAITDLQDRVKSLE 38 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhhhhhhhhhhHHHHHHHHh
Confidence 334555667777777777788888888888
No 292
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=46.10 E-value=1.1e+02 Score=24.43 Aligned_cols=11 Identities=18% Similarity=-0.112 Sum_probs=6.4
Q ss_pred hhhHHHHHHHH
Q 023690 27 FEQLDVARKIT 37 (278)
Q Consensus 27 ~EQLdlarkIt 37 (278)
.++|+..+.|.
T Consensus 43 ~~dl~~l~~I~ 53 (142)
T 3gp4_A 43 AEDLRWILFTR 53 (142)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45666666554
No 293
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=46.04 E-value=1.1e+02 Score=24.37 Aligned_cols=66 Identities=17% Similarity=0.248 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
||.++-+-.+-|.+++...+.-..-|..|-..|- +-+. + ..+-++.-..|..-|++||..|..+..
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~-keka--q-~q~qq~~v~elqgEI~~Lnq~Lqda~~ 88 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLE-KKVS--Q-ALEQQARIKELENEVTKLNQELENLRI 88 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--h-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555566666666666666666666665554 1111 1 122233455677777777776665543
No 294
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=45.87 E-value=40 Score=28.40 Aligned_cols=43 Identities=35% Similarity=0.512 Sum_probs=23.3
Q ss_pred hhhHHHHHHHHH------HHHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHH
Q 023690 27 FEQLDVARKITS------IAISTRVSDLESE-------HSALRSQLAEKDSRIAEL 69 (278)
Q Consensus 27 ~EQLdlarkIts------~A~atRVs~LE~E-------~~~LR~~LaEKd~~i~~L 69 (278)
..||.||-.|.. |----|+..|..+ ++..|.++.|||+.|..|
T Consensus 97 ekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 152 (166)
T 1nyh_A 97 EKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 152 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 347888877762 2223345555544 234455666666666544
No 295
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=45.74 E-value=10 Score=26.22 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=14.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAE 61 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaE 61 (278)
.|..||..||.++..|+..|+|
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777777777666543
No 296
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=45.69 E-value=1.8e+02 Score=29.34 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=34.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.+.=+...|.|.+++|+.|.+-+..++.+|+|+...+..|+
T Consensus 312 ~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~ 352 (551)
T 2b5u_A 312 ATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYN 352 (551)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44557788999999999999999999999999887666665
No 297
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=45.65 E-value=55 Score=24.44 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVS 113 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDva 113 (278)
+++.+|..|++.|.....-|.+.|.
T Consensus 54 ~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 54 DSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444444444444444444433
No 298
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=45.65 E-value=1.5e+02 Score=25.67 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH--HHHHHHHHHHh
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS--KLEVFRKTLVQ 124 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva--KLE~FKk~Lmq 124 (278)
|.-||.++++.+..+++..++|......|. .-+..+..+..|+..-+..-....+++.--.. -+|-|+..+-+
T Consensus 80 I~llrErea~lEqkVaeq~e~Ve~e~q~Le~ar~el~qArke~eKfelHrqiwqaE~kre~E~qEElEqEEf~s~~~~ 157 (169)
T 3k29_A 80 IKVVAIQLSEEEEKVNKQKENVLAASKELERAEVELTKRRKEEEKTRLHKEEWMKEALKEEARQEEKEQDEMGQLLHQ 157 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445666666666666666666666666665 44555666666665555544455555554444 34556554433
No 299
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=45.55 E-value=1.3e+02 Score=30.44 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 37 ts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.+.++..+-..+|..+..||....+.++.+..||+.-+.+.-.++
T Consensus 6 ~~~~~~~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~ 50 (585)
T 1y1u_A 6 LVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQ 50 (585)
T ss_dssp -----CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 334444555666677777777777766666666655555555444
No 300
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=45.45 E-value=1.2e+02 Score=24.52 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Q 023690 66 IAELQSQIESIYSSLS---DKLGQAQA 89 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~e 89 (278)
|.+||+.+...|.+|. -||+.|.+
T Consensus 37 ieeLQ~Ei~~~E~QL~iArQKLkdAe~ 63 (107)
T 2k48_A 37 LQELQENITAHEQQLVTARQKLKDAEK 63 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555 44444443
No 301
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=45.40 E-value=34 Score=32.78 Aligned_cols=24 Identities=13% Similarity=0.151 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhHHHHHH-HHHHHH
Q 023690 100 ALTNTVRKLQRDVSKLEV-FRKTLV 123 (278)
Q Consensus 100 ~La~TvKkL~rDvaKLE~-FKk~Lm 123 (278)
.+..-++.|...+.+||. ++.-|+
T Consensus 91 ~a~~e~~~l~~~l~~le~~l~~lLl 115 (371)
T 1zbt_A 91 MAKEELKNSKVAKEEYEEKLRFLLL 115 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345567888888888875 554443
No 302
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=45.25 E-value=39 Score=22.32 Aligned_cols=17 Identities=18% Similarity=0.190 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023690 86 QAQADKERLSKENEALT 102 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La 102 (278)
....+|..|++|...|-
T Consensus 12 eLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 12 ELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHH
Confidence 34444444444444443
No 303
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=45.20 E-value=33 Score=22.56 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=5.6
Q ss_pred hhhhhHHHHHHH
Q 023690 44 RVSDLESEHSAL 55 (278)
Q Consensus 44 RVs~LE~E~~~L 55 (278)
||++||..+..|
T Consensus 1 RMnQLEdKVEel 12 (33)
T 2wq1_A 1 RMKQLEDKIEEN 12 (33)
T ss_dssp CHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 445555444443
No 304
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=45.11 E-value=80 Score=24.89 Aligned_cols=19 Identities=16% Similarity=0.102 Sum_probs=10.0
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQL 59 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L 59 (278)
.+.+..+|-.|+..||.++
T Consensus 21 ~a~~~~~lk~E~~~lk~E~ 39 (93)
T 3sjb_C 21 LSKKYLAKVKERHELKEFN 39 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544
No 305
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=45.06 E-value=1.3e+02 Score=30.06 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=8.4
Q ss_pred HHHHHHHhhhHHHHH
Q 023690 102 TNTVRKLQRDVSKLE 116 (278)
Q Consensus 102 a~TvKkL~rDvaKLE 116 (278)
.+.++.|+.++..|+
T Consensus 566 ~~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 445566666655553
No 306
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=45.00 E-value=2.5e+02 Score=28.01 Aligned_cols=53 Identities=17% Similarity=0.164 Sum_probs=31.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E 97 (278)
...-|.-++.++.+=++..++.+.+++|-....+.+..+|.+-.++.++-.++
T Consensus 29 ka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 29 KAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455556666666666666777777777766666665555555555544444
No 307
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=44.99 E-value=1.2e+02 Score=24.39 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (278)
.++..+.+++..|+......-..|..|...|.+|.+=-..|.
T Consensus 44 ~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 44 KSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 344466777777777777777777777777777755444443
No 308
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=44.87 E-value=97 Score=23.87 Aligned_cols=22 Identities=14% Similarity=0.228 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023690 60 AEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 60 aEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.|=...+.+|++-+..|+.++.
T Consensus 39 ~El~~~l~el~e~l~DL~~SI~ 60 (95)
T 2c5k_T 39 EEIQDILKDVEETIVDLDRSII 60 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666664
No 309
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=44.85 E-value=26 Score=28.38 Aligned_cols=38 Identities=18% Similarity=0.372 Sum_probs=26.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
|..|+..|+..+..|...+.++.+.|..++..+..+..
T Consensus 103 l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 103 LEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777777777777777666555543
No 310
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=44.79 E-value=80 Score=29.94 Aligned_cols=41 Identities=20% Similarity=0.260 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
++...|..|-..|.+.+|.|..++..+|.=-..++.+|-+-
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 104 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLP 104 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45567777788888888888888888877767777776554
No 311
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=44.56 E-value=1.1e+02 Score=24.86 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Q 023690 66 IAELQSQIESIYSSLS---DKLGQAQAD 90 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~ee 90 (278)
|.+||+.+...|.+|. -||+.|.+.
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~ 51 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQ 51 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776 455555543
No 312
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=43.86 E-value=1.1e+02 Score=23.83 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 60 aEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
.|+.+.+++|+.-+.+.=.++. ....--+||.-||+.|+-.--||-|+|---
T Consensus 22 serte~lqqlr~~y~s~~se~~----dlt~s~ekl~ae~~dlivsnsklfrqig~t 73 (97)
T 1no4_A 22 SERTEALQQLRVNYGSFVSEYN----DLTKSHEKLAAEKDDLIVSNSKLFRQIGLT 73 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHhccCCeeeecHHHHHHhccc
Confidence 3667777777777776666665 556667899999999998888888887543
No 313
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=43.26 E-value=66 Score=29.41 Aligned_cols=24 Identities=17% Similarity=0.122 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq 70 (278)
..+.|+..|+.+..+-.++|++|+
T Consensus 182 ~~~~eie~L~~~~~~L~eEi~~Le 205 (315)
T 2ve7_A 182 VDAFKLESLEAKNRALNEQIARLE 205 (315)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555444444444444443
No 314
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=43.25 E-value=14 Score=29.53 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (278)
Q Consensus 49 E~E~~~LR~~LaEKd---~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (278)
..+|..|++.++.+. ..|.-|+.++.-....+. .-+.+-++|..|+..|...+-.
T Consensus 37 Q~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~----aERaaREk~~~EKe~L~~ql~~ 94 (96)
T 3fx0_A 37 QEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERQAREKLAEKKELLQEQLEQ 94 (96)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTSSTTSCC------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHh
Confidence 345666666666555 555666666655555554 3344456666666666655443
No 315
>3mx7_A FAS apoptotic inhibitory molecule 1; beta sheet, apoptosis; 1.76A {Homo sapiens}
Probab=43.25 E-value=5.5 Score=31.29 Aligned_cols=17 Identities=53% Similarity=0.831 Sum_probs=13.7
Q ss_pred CCCCCC--Ccccccccccc
Q 023690 260 GSQTGK--TRVDGKEFFRQ 276 (278)
Q Consensus 260 ~s~~gR--~RvDGKEFFRQ 276 (278)
+-..|+ .+|||||-||+
T Consensus 24 gtttGkrvi~VDGkev~r~ 42 (90)
T 3mx7_A 24 GTTSGKRVVYVDGKEEIRK 42 (90)
T ss_dssp CTTTCCEEEEETTEEEEEE
T ss_pred ccccceEEEEECCEEEEec
Confidence 445676 99999999986
No 316
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=43.24 E-value=1.6e+02 Score=25.37 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=15.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 101 LTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
......+|..-+++.|.-=..|.+++.
T Consensus 126 p~~L~~~L~~a~~e~eeeS~~l~~~F~ 152 (192)
T 2p22_C 126 DIALKKKLEQNTKKLDEESSQLETTTR 152 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455566666666666666666653
No 317
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=43.22 E-value=21 Score=25.19 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 85 GQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
....++...|.+||..|...++.|+..
T Consensus 30 d~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 30 AQVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355566667777777777777666543
No 318
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=43.20 E-value=1.3e+02 Score=24.38 Aligned_cols=17 Identities=6% Similarity=-0.009 Sum_probs=7.4
Q ss_pred HHHhhhhhHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRS 57 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~ 57 (278)
|......|..+++.+-.
T Consensus 34 Lk~e~e~l~~~~~~~~~ 50 (155)
T 2oto_A 34 LKARLENAMEVAGRDFK 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444333
No 319
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=43.14 E-value=89 Score=22.37 Aligned_cols=16 Identities=19% Similarity=0.385 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 023690 63 DSRIAELQSQIESIYS 78 (278)
Q Consensus 63 d~~i~~Lq~r~s~le~ 78 (278)
+..|++|+.++..+|.
T Consensus 5 ~~~~~~le~kl~~lEn 20 (65)
T 3m0d_C 5 EKLLAELEGKLRVFEN 20 (65)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 320
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=42.95 E-value=1.5e+02 Score=24.92 Aligned_cols=28 Identities=11% Similarity=0.299 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 91 KERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 91 ~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
..+..+|++.+....+.|..++..++.|
T Consensus 79 q~q~~~ek~~r~e~k~~l~~ql~qv~~L 106 (150)
T 4dci_A 79 QQQVAGKRSELEEQKRNLLQQQAQVREL 106 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3567778888888888888888777665
No 321
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=42.94 E-value=1.7e+02 Score=25.43 Aligned_cols=29 Identities=0% Similarity=0.192 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSK 114 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaK 114 (278)
...+....+.+.-..+...+..|...+.+
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (213)
T 3g67_A 50 KSGTNVDQIVERVKEASSQIGETLENIRS 78 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443333
No 322
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.89 E-value=1.1e+02 Score=25.43 Aligned_cols=73 Identities=11% Similarity=0.229 Sum_probs=42.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY--SSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le--~~l~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
.++..+..|=..|..|.+.|..|=+-+=.++ .+.| .||+...+++....+|+ ...|++-.+-+.+++..-+.+
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el---~~~v~eae~ll~~v~~~l~~i 129 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEK---IEAIKKKEKLLRHVDSLIEDF 129 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 5556677777788888888877754443332 2223 56666666665555554 445555555555555544433
No 323
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=42.67 E-value=1.3e+02 Score=24.26 Aligned_cols=69 Identities=12% Similarity=0.214 Sum_probs=39.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIY--SSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le--~~l~-~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
..+...+..|=..|..|.+.|..|=+.+=.++ .+.| .||+...+++....+|+.. .|++-.+-+.+++.
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~---~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIE---AIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 34556677777788888888877755443332 2223 5666666666666655444 44444444444433
No 324
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=42.00 E-value=1.1e+02 Score=23.00 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=20.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
..|+..+|.+-..|..++..=...+.+=+.+-..+..+|.
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556665555555555555555444444444444443
No 325
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=41.95 E-value=43 Score=22.45 Aligned_cols=19 Identities=32% Similarity=0.567 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023690 53 SALRSQLAEKDSRIAELQS 71 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~ 71 (278)
..|-..+..||..|+.|++
T Consensus 10 ekLhk~ie~KdeeIa~Lk~ 28 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKK 28 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555543
No 326
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=41.90 E-value=1.4e+02 Score=24.31 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=14.3
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQ 58 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~ 58 (278)
..|-++...||.|...|...
T Consensus 5 ~~i~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34667788888888777654
No 327
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=41.88 E-value=2e+02 Score=29.64 Aligned_cols=39 Identities=10% Similarity=0.178 Sum_probs=24.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~ 79 (278)
+..+-..+|..+..||..+.+-++.|..|++.-..++-.
T Consensus 135 ~~~~~~~i~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~ 173 (683)
T 1yvl_A 135 MLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFK 173 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666777777777777777666666555544443
No 328
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=41.53 E-value=79 Score=29.78 Aligned_cols=6 Identities=33% Similarity=0.944 Sum_probs=2.1
Q ss_pred Hhhhhh
Q 023690 43 TRVSDL 48 (278)
Q Consensus 43 tRVs~L 48 (278)
+||..|
T Consensus 212 ~~~~~~ 217 (373)
T 3hhm_B 212 SRISEI 217 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 329
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Probab=41.45 E-value=29 Score=34.41 Aligned_cols=76 Identities=14% Similarity=0.193 Sum_probs=20.0
Q ss_pred HHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 30 LDVA--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (278)
Q Consensus 30 Ldla--rkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKk 107 (278)
|.|| -+||+-+--.+..+.+.+|.+||+.+..-.+.+.+|..-+..+-.+++ +.|+. =|+.|.-++..
T Consensus 96 LGVATaAqiTAavAL~~a~~na~~I~~lk~si~~tn~Av~~l~~~~~~~~~av~-----~~q~~-----in~~i~p~i~~ 165 (481)
T 1g5g_A 96 LGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTNGLSQLAVAVG-----KMQQF-----VNDQFNKTAQE 165 (481)
T ss_dssp --------------------------------------------CHHHHHHHHH-----HHHHH-----HHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHhhhhhhh
Confidence 5565 678877767788899999999999999999999999999988888776 11111 13455666666
Q ss_pred HhhhHHHH
Q 023690 108 LQRDVSKL 115 (278)
Q Consensus 108 L~rDvaKL 115 (278)
|.++++.+
T Consensus 166 l~C~v~~~ 173 (481)
T 1g5g_A 166 LDCIKITQ 173 (481)
T ss_dssp HHHHHHHH
T ss_pred cchHHHHH
Confidence 66666553
No 330
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=41.09 E-value=1.4e+02 Score=24.08 Aligned_cols=79 Identities=11% Similarity=0.277 Sum_probs=39.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-------HHh
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR-------KLQ 109 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvK-------kL~ 109 (278)
|+..|..+...-++.+-..++--.+.|..=-.++....++|| +||..-...+..=-+|-..+++++- -|.
T Consensus 17 ~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~e 96 (114)
T 2xzr_A 17 HIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIE 96 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 455555555555555555555555555544455555666666 5554443333333334444444433 344
Q ss_pred hhHHHHHHH
Q 023690 110 RDVSKLEVF 118 (278)
Q Consensus 110 rDvaKLE~F 118 (278)
.+|++|+.+
T Consensus 97 ne~ar~kkl 105 (114)
T 2xzr_A 97 NEIARIKKL 105 (114)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555433
No 331
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=40.95 E-value=1.6e+02 Score=24.74 Aligned_cols=29 Identities=14% Similarity=0.082 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 023690 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq 127 (278)
+.....|.++|+--.+++.-...++..||
T Consensus 177 ~~Y~~~v~~~n~~~~~~~~~~~~~~~~lQ 205 (276)
T 2v0o_A 177 DTYKLYVEKYALAKADFEQKMTETAQKFQ 205 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555544444444444444444
No 332
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=40.79 E-value=53 Score=29.68 Aligned_cols=12 Identities=8% Similarity=0.155 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHh
Q 023690 98 NEALTNTVRKLQ 109 (278)
Q Consensus 98 ~~~La~TvKkL~ 109 (278)
-..|.+.+|.=|
T Consensus 43 L~dL~d~iRr~N 54 (233)
T 2yko_A 43 LQEIWDYVKRPN 54 (233)
T ss_dssp HHHHHHHHTTTE
T ss_pred HHHHHHhhcccc
Confidence 334455555443
No 333
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=40.64 E-value=1.5e+02 Score=27.08 Aligned_cols=65 Identities=18% Similarity=0.215 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 59 LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
+..+.++-+|++.|+..++..+..+...+......|...+-.....++.|-.+.+ .++|...|.=
T Consensus 172 lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~D--~~lk~~t~~~ 236 (279)
T 3qwe_A 172 QERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGD--EVLRRVTLSL 236 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 4446677788999999999999888888888888887776666666666655443 2455544433
No 334
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=40.60 E-value=14 Score=32.78 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 86 ~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
...+||++|.+|+..|......|..--+..+.|
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rL 55 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDL 55 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777766665555554444444444
No 335
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=40.20 E-value=35 Score=27.28 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 023690 68 ELQSQIESIYS 78 (278)
Q Consensus 68 ~Lq~r~s~le~ 78 (278)
+|-+++..||.
T Consensus 53 eLh~~I~~LEe 63 (106)
T 1j1d_B 53 ELWQTIYNLEA 63 (106)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33334444443
No 336
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=40.17 E-value=1.7e+02 Score=24.83 Aligned_cols=21 Identities=33% Similarity=0.580 Sum_probs=12.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDS 64 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~ 64 (278)
+|+.||.++..|-.+|.|-..
T Consensus 12 ~ia~L~~D~~s~~~eleEnqe 32 (167)
T 4gkw_A 12 EVADLKQDTESLQKQLEENQE 32 (167)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666554433
No 337
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=40.17 E-value=1.3e+02 Score=25.79 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 58 QLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 58 ~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
++.--+.++.+|++|++.++..|.
T Consensus 70 n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 70 KTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHh
Confidence 344557788888888888888776
No 338
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=40.03 E-value=68 Score=21.49 Aligned_cols=12 Identities=42% Similarity=0.626 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 023690 86 QAQADKERLSKE 97 (278)
Q Consensus 86 ~a~ee~~kL~~E 97 (278)
.++++|+||.+|
T Consensus 4 ~~L~ENekLhk~ 15 (37)
T 1t6f_A 4 EALKENEKLHKE 15 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455555444
No 339
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=39.60 E-value=24 Score=22.11 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023690 53 SALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
++|+++-+.-.++|+.|+-.+
T Consensus 3 rrlkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHH
Confidence 344444443334444444333
No 340
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=39.05 E-value=57 Score=27.04 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=16.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
.|+..||.|-=.|-.++..++-.|.+|..||+.|
T Consensus 72 ~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl 105 (133)
T 1j1d_C 72 ARVDKVDEERYDIEAKVTKNITEIADLTQKIFDL 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHH
Confidence 3444445544444444444444555555444444
No 341
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=39.01 E-value=59 Score=30.84 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=13.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 023690 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (278)
Q Consensus 101 La~TvKkL~rDvaKLE~FKk~LmqSLq~ 128 (278)
|...++.|..++..||.--+.+-..|++
T Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 73 IQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555444444444433
No 342
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=39.00 E-value=1.3e+02 Score=23.22 Aligned_cols=71 Identities=15% Similarity=0.185 Sum_probs=37.3
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
-..|.++|..+...|+++.|=++++..+...-.--..+|..-|+..-+--.-|+..-.+|-+.|+++.-+.
T Consensus 11 ~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Y 81 (93)
T 3t98_B 11 RVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQY 81 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888777777776654321101122322222333333445555555555555444443
No 343
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=38.98 E-value=75 Score=25.57 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 53 SALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
..|.+.|++..+.|.+|..++..|...+
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~v 34 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTV 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444333
No 344
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=38.87 E-value=1e+02 Score=22.74 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023690 82 DKLGQAQADKERLSKENE 99 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~ 99 (278)
+||+.+.--+++...|..
T Consensus 37 ~KLRdiE~l~q~~e~e~~ 54 (75)
T 3mtu_A 37 GKLRNIELICQENEGEND 54 (75)
T ss_dssp HHHHHHHHHHHHTGGGTC
T ss_pred HHHHHHHHHHHHHHhhhH
Confidence 555565555555444433
No 345
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=38.64 E-value=2.4e+02 Score=28.11 Aligned_cols=68 Identities=18% Similarity=0.140 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH----H---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 33 ARKITSIAISTRVSDLESEHSALRSQLA----E---------KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE 99 (278)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~La----E---------Kd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~ 99 (278)
++|+.-.+. ...+..-++++|..+. + |+.....|+..+.....+|+.-+.+.......+.+|++
T Consensus 589 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~ 665 (695)
T 2j69_A 589 ARRELVKTA---KKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFN 665 (695)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred HHHHHHHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 555554443 4444555566664444 1 22333344444444444444222233333344555555
Q ss_pred HHHH
Q 023690 100 ALTN 103 (278)
Q Consensus 100 ~La~ 103 (278)
.|..
T Consensus 666 ~l~~ 669 (695)
T 2j69_A 666 RLKN 669 (695)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5555
No 346
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=38.36 E-value=45 Score=22.03 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.6
Q ss_pred hhhhhHHHHHHH
Q 023690 44 RVSDLESEHSAL 55 (278)
Q Consensus 44 RVs~LE~E~~~L 55 (278)
||++||..+..|
T Consensus 2 RM~QLEdKVEeL 13 (34)
T 1uo4_A 2 RMKQIEDKGEEI 13 (34)
T ss_dssp -CHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 555555554444
No 347
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=38.07 E-value=1.1e+02 Score=22.00 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=26.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 40 A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
.+...|+..-.....-++++.|+.+.+..|++|-+.|...-
T Consensus 8 ~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A 48 (63)
T 1urq_A 8 GVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSA 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555556666677777777777777777766655433
No 348
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=38.01 E-value=74 Score=20.86 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~ 75 (278)
|+.|...+..|++|..----.+..|.++++.
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsa 33 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444433222233344444443
No 349
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=37.84 E-value=1.5e+02 Score=23.48 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 51 E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
++..||.++.+=......|++++..||..|-
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888777888888888888887774
No 350
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=37.74 E-value=1.9e+02 Score=24.73 Aligned_cols=63 Identities=16% Similarity=0.283 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
+++--+.+|+..|+.--..|-+.|..+...+.+|+.++++|--.|. +|.+.+|....-++..+
T Consensus 96 ~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~-----------qL~K~rD~yl~wL~~~G 158 (170)
T 3l4q_C 96 LNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLM-----------QLRKIRDQYLVWLTQKG 158 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHHHHHHHHcC
Confidence 4566778888888888888888888888888888888887766554 66677776665554433
No 351
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=37.71 E-value=20 Score=32.01 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 85 GQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 85 ~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
....++...|++|+..|.+.+.+|.+++
T Consensus 151 e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 151 KSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp THHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555544444444443
No 352
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=37.32 E-value=2.6e+02 Score=27.40 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
..|...++.|..++..||.--+.|-..|++-
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~ 104 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSK 104 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666555555555443
No 353
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=37.28 E-value=1.1e+02 Score=27.34 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023690 84 LGQAQADKERLSKENEALT 102 (278)
Q Consensus 84 L~~a~ee~~kL~~E~~~La 102 (278)
|..+++||.+|.++...|.
T Consensus 110 L~eaLeEN~~Lh~~ie~l~ 128 (209)
T 2wvr_A 110 LYEALKENEKLHKEIEQKD 128 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344555555554444443
No 354
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=37.15 E-value=1.5e+02 Score=27.40 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=34.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.|+..|..++..++.++...|..|+++-.++-.||.+++
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~ 254 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIA 254 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999888888888886
No 355
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=37.01 E-value=2.3 Score=34.28 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.4
Q ss_pred CCCCChHHHHhcCCCCchhhH
Q 023690 10 STFDLPEEVLQVLPSDPFEQL 30 (278)
Q Consensus 10 ~~F~lp~eil~vLP~DP~EQL 30 (278)
.-..|+|+-|.-||.+-|.++
T Consensus 4 ~~~~~sd~~Lv~m~v~elN~~ 24 (107)
T 3a5t_A 4 MGTSLTDEELVTMSVRELNQH 24 (107)
T ss_dssp CCCCCCHHHHHHSCHHHHHHT
T ss_pred CCCCCCHHHHhcCCHHHHHHH
Confidence 356789999999999888776
No 356
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=36.98 E-value=2.2e+02 Score=28.80 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=32.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
|...||..+..||....+-++.|..|++.-..++-.++
T Consensus 3 ~~~~i~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~~~y~ 40 (575)
T 1bf5_A 3 KQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCK 40 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55678999999999999999999999888887777766
No 357
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=36.92 E-value=80 Score=29.88 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=5.2
Q ss_pred CchhhHHHH
Q 023690 25 DPFEQLDVA 33 (278)
Q Consensus 25 DP~EQLdla 33 (278)
+|..++.+-
T Consensus 162 ~~~~rr~~L 170 (517)
T 4ad8_A 162 SPANQRGLL 170 (517)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666665543
No 358
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=36.39 E-value=86 Score=21.77 Aligned_cols=10 Identities=40% Similarity=0.394 Sum_probs=5.8
Q ss_pred hhhHHHHHHH
Q 023690 27 FEQLDVARKI 36 (278)
Q Consensus 27 ~EQLdlarkI 36 (278)
.|||.||-|.
T Consensus 4 EEq~ALA~km 13 (46)
T 2rr9_C 4 EEQFALALKM 13 (46)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4677666544
No 359
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=36.31 E-value=1.1e+02 Score=28.91 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 55 LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
.|+.+.++.+.+ -.++..+...|+.--..+.+++..-.++-+.|..+|.+||+++.+.|
T Consensus 65 ~R~~vl~~a~~L---a~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~~ 123 (463)
T 2d4y_A 65 ARQALIGKAEGL---VNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRMT 123 (463)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355555544332 23333333333322234445555555555556666666666655443
No 360
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=36.18 E-value=4.2e+02 Score=28.14 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHH-HHHHhhccccc
Q 023690 90 DKERLSKENEALTNTVRKLQ-------RDVSKLEVFR-KTLVQSLKDDE 130 (278)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~-------rDvaKLE~FK-k~LmqSLq~d~ 130 (278)
+.+.|.+.+..-.+..|++| ++++.+|+=| +++|.+|+.|-
T Consensus 758 el~~~~~~~~~el~~~~~~~ele~~k~~~la~ie~~kf~~~v~aig~~t 806 (861)
T 2zuo_A 758 ELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGT 806 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhChHH
Confidence 33444555555555555543 5666666644 67788887653
No 361
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=35.99 E-value=80 Score=21.87 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=9.0
Q ss_pred HhhhhhHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQL 59 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~L 59 (278)
-||.+||+-+..|..++
T Consensus 5 ekv~~Le~~ld~LqTr~ 21 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRF 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45556666555554443
No 362
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=35.78 E-value=1.1e+02 Score=26.07 Aligned_cols=8 Identities=63% Similarity=0.758 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 023690 55 LRSQLAEK 62 (278)
Q Consensus 55 LR~~LaEK 62 (278)
||+++..|
T Consensus 90 Lr~ql~ak 97 (175)
T 3lay_A 90 LRQQLISK 97 (175)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 363
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=35.42 E-value=25 Score=22.04 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 93 RLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 93 kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
.|.=||+.|.+.+-.|...++.|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 466788888888888877766653
No 364
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=35.32 E-value=1.6e+02 Score=26.16 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=12.3
Q ss_pred ChHHHHh----cCCCCchhhHHHHHHH
Q 023690 14 LPEEVLQ----VLPSDPFEQLDVARKI 36 (278)
Q Consensus 14 lp~eil~----vLP~DP~EQLdlarkI 36 (278)
|..+.+. .||. -.||-.++.+|
T Consensus 360 i~~~~l~~~~i~lPp-l~EQ~~Iv~~l 385 (464)
T 2y7c_A 360 ISGKDIKSQVVLLPP-VKEQAEIVRRV 385 (464)
T ss_dssp CCHHHHHHCEEEECC-HHHHHHHHHHH
T ss_pred ecHHHHhcCcCCCCC-HHHHHHHHHHH
Confidence 5555544 4564 55777665544
No 365
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=35.25 E-value=2.1e+02 Score=24.49 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 72 QIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 72 r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
+-..|+.+|..+=........+|..++..|......|.+.+..|+.
T Consensus 39 ~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 39 RQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444333344556788899999999999999999988887
No 366
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=35.02 E-value=2.4e+02 Score=25.05 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 023690 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRI 66 (278)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i 66 (278)
+|-.-||..+|..++++ .|++..=-++.|--+.|
T Consensus 54 ~dA~~Kige~A~~S~~s---keLG~vL~qis~~hR~i 87 (222)
T 3ok8_A 54 FSAIQKIGEQALQSSTS---QILGEILVQMSDTQRHL 87 (222)
T ss_dssp HHHHHHHHHHHHHSSSC---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCch---hHHHHHHHHHHHHHHHH
Confidence 45567888999999886 56666666666655555
No 367
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=34.36 E-value=19 Score=33.54 Aligned_cols=10 Identities=10% Similarity=-0.091 Sum_probs=6.6
Q ss_pred ccccCCCCcc
Q 023690 244 LSSVHSSHSS 253 (278)
Q Consensus 244 ~~~~~ss~~S 253 (278)
-|||..=+.+
T Consensus 268 gWWy~~C~~s 277 (328)
T 1fzc_B 268 GWWYNRCHAA 277 (328)
T ss_dssp CBCCSSBCSB
T ss_pred CEeCCCCCCC
Confidence 4688765555
No 368
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=34.34 E-value=61 Score=21.40 Aligned_cols=10 Identities=20% Similarity=0.478 Sum_probs=4.3
Q ss_pred hhhhhHHHHH
Q 023690 44 RVSDLESEHS 53 (278)
Q Consensus 44 RVs~LE~E~~ 53 (278)
||++||..+.
T Consensus 2 RMnQLEdKVE 11 (34)
T 3c3f_A 2 RMXQIEXKLE 11 (34)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 4444444433
No 369
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.32 E-value=1.7e+02 Score=29.60 Aligned_cols=6 Identities=33% Similarity=0.617 Sum_probs=2.9
Q ss_pred CCCCCC
Q 023690 201 PPGSPP 206 (278)
Q Consensus 201 P~~sP~ 206 (278)
|+|+-|
T Consensus 596 p~GtGK 601 (854)
T 1qvr_A 596 PTGVGK 601 (854)
T ss_dssp CSSSSH
T ss_pred CCCCCH
Confidence 445544
No 370
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=34.31 E-value=30 Score=33.84 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.8
Q ss_pred hhhHHHHHHH
Q 023690 46 SDLESEHSAL 55 (278)
Q Consensus 46 s~LE~E~~~L 55 (278)
-+||.|+..+
T Consensus 325 ~EL~~Ei~~~ 334 (470)
T 4g63_A 325 EELGEEIASQ 334 (470)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3567776543
No 371
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=34.25 E-value=1.6e+02 Score=22.58 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Q 023690 66 IAELQSQIESIYSSLS---DKLGQAQAD 90 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~ee 90 (278)
|.+||+-+...|.+|- -||+.+.+.
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERA 34 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776 555555543
No 372
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=34.10 E-value=68 Score=28.51 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=15.6
Q ss_pred HHHhhhHHHHHHHHHHHHhhc
Q 023690 106 RKLQRDVSKLEVFRKTLVQSL 126 (278)
Q Consensus 106 KkL~rDvaKLE~FKk~LmqSL 126 (278)
.++++-.+.|+.||+.||+-+
T Consensus 184 ~~~~~~~~~l~~~k~~ll~~~ 204 (464)
T 2y7c_A 184 ARFEQIPQILKRFRQAVLGGA 204 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555677888999999874
No 373
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=34.00 E-value=63 Score=22.77 Aligned_cols=17 Identities=35% Similarity=0.514 Sum_probs=12.8
Q ss_pred hhhhhHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLA 60 (278)
Q Consensus 44 RVs~LE~E~~~LR~~La 60 (278)
=+..||.+-..||.+|-
T Consensus 14 ~l~~LEkqF~~LkEqlY 30 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLF 30 (49)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35678888888888876
No 374
>3rrr_B Fusion glycoprotein F0; six-helix bundle, membrane fusion, viral protein; HET: NAG; 2.82A {Human respiratory syncytial virus} PDB: 3rrt_B
Probab=33.84 E-value=2.2e+02 Score=27.34 Aligned_cols=62 Identities=19% Similarity=0.280 Sum_probs=46.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+..+.+.+|..||..|.+=.+.|.+|++=+..+-.+++ +.|+. =|+.|.-++.+|.++++-+
T Consensus 10 ~a~~Na~~I~~Lk~si~~TN~AV~~l~~~~~~~~~Av~-----~lQd~-----IN~~i~Pain~l~C~v~~~ 71 (374)
T 3rrr_B 10 KVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL-----DLKNY-----IDKQLLPIVNKQSCSISNI 71 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHhhhhhhhhcchHhHHh
Confidence 56678999999999999999999999988887777775 22222 1455666677777776654
No 375
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=33.64 E-value=68 Score=24.49 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
|-..+-.++..|.+|+.+|.|||+=+..|=
T Consensus 19 Li~l~lk~~~~l~~k~~~v~eLEdYID~LL 48 (75)
T 3tso_C 19 VLQELVKHKELLRRKDTHIRELEDYIDNLL 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777888999999999987666543
No 376
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=33.58 E-value=1.8e+02 Score=23.07 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHH
Q 023690 66 IAELQSQIESIYSSLS---DKLGQAQAD 90 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~ee 90 (278)
|.+||+-+...|.+|. -||+.|.+.
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~~ 34 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAERA 34 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766 455555543
No 377
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=33.53 E-value=2.5e+02 Score=24.71 Aligned_cols=13 Identities=38% Similarity=0.636 Sum_probs=6.5
Q ss_pred HHHHHHHHhhccc
Q 023690 116 EVFRKTLVQSLKD 128 (278)
Q Consensus 116 E~FKk~LmqSLq~ 128 (278)
+-..++|+.-|..
T Consensus 143 emi~k~l~~~L~k 155 (213)
T 4ani_A 143 EMVYRSLVDALKK 155 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444555555543
No 378
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=33.22 E-value=1.9e+02 Score=23.38 Aligned_cols=70 Identities=26% Similarity=0.340 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHH------------HHHHHHHHHHHHHHhhh
Q 023690 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQ--------------ADKERL------------SKENEALTNTVRKLQRD 111 (278)
Q Consensus 58 ~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~--------------ee~~kL------------~~E~~~La~TvKkL~rD 111 (278)
-++.-.++|.+||++...+|..|+.|+.... |-+... ..--+.+..-+++|--|
T Consensus 7 vIaqQQ~~In~lq~~~~klE~dlq~ki~slisSiEw~l~Smel~de~K~DieQqLnsid~Inp~~aiddiE~~IrnlI~D 86 (110)
T 1lj2_A 7 VIPQQQAHIAELQVYNNKLERDLQNKIGSLTSSIEWYLRSMELDPEIKADIEQQINSIDAINPLHAFDDLESVIRNLISD 86 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTSCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHhccccccCcchhHhHHHHHHHHHHHH
Confidence 3556677888888888888888884433221 111122 22345677777888888
Q ss_pred HHHHHHHHHHHHhhcc
Q 023690 112 VSKLEVFRKTLVQSLK 127 (278)
Q Consensus 112 vaKLE~FKk~LmqSLq 127 (278)
.+++=-+=|-|++.++
T Consensus 87 yd~~flmfkgL~~~~n 102 (110)
T 1lj2_A 87 YDKLFLMFKGLIQRSN 102 (110)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHcC
Confidence 8887777777777654
No 379
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=33.16 E-value=1.6e+02 Score=23.22 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 023690 63 DSRIAELQ 70 (278)
Q Consensus 63 d~~i~~Lq 70 (278)
...|.+|.
T Consensus 22 q~~id~lk 29 (94)
T 3jsv_C 22 QELIDKLK 29 (94)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 380
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=32.79 E-value=4.4e+02 Score=27.31 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
.-|..||.+|.+.|...++.|+.-|+.-+.+++.+..-|.+.
T Consensus 401 ~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~~EL~~i 442 (716)
T 1zvu_A 401 KLEEMKIRGEQSELEKERDQLQGILASERKMNNLLKKELQAD 442 (716)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999998888877777776666554
No 381
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=32.73 E-value=61 Score=23.75 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 87 AQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
..+++..|..|++.|......|...|..|
T Consensus 52 L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 52 MRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444444433
No 382
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=32.06 E-value=3.7e+02 Score=26.70 Aligned_cols=42 Identities=14% Similarity=0.269 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
..+..||.+|.+.|...++.|..-|+.-+.+++-+..-|.+-
T Consensus 453 ~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i 494 (514)
T 2inr_A 453 NTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEI 494 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 457889999999999999999998888777766666665543
No 383
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=32.03 E-value=2e+02 Score=24.09 Aligned_cols=17 Identities=18% Similarity=0.051 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023690 65 RIAELQSQIESIYSSLS 81 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~ 81 (278)
.|+.|++.+-.+-..+.
T Consensus 172 ~l~~lrr~l~~lrr~l~ 188 (252)
T 3ck6_A 172 NHIAAQKALISIKRFIR 188 (252)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555554
No 384
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=31.66 E-value=2.5e+02 Score=25.41 Aligned_cols=43 Identities=12% Similarity=0.199 Sum_probs=26.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEK-----d~~i~~Lq~r~s~le~~l~ 81 (278)
-.|..-+..+|.++..|-+++.++ -..|..|++++..+-..+.
T Consensus 191 d~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~ 238 (363)
T 2iub_A 191 DDYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIW 238 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666777777776665422 3456777777777766665
No 385
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=31.52 E-value=1.2e+02 Score=21.03 Aligned_cols=10 Identities=40% Similarity=0.394 Sum_probs=5.6
Q ss_pred hhhHHHHHHH
Q 023690 27 FEQLDVARKI 36 (278)
Q Consensus 27 ~EQLdlarkI 36 (278)
.|||.||-|.
T Consensus 7 EEq~ALA~rm 16 (45)
T 3a1q_C 7 EEQFALALKM 16 (45)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4677666443
No 386
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=31.44 E-value=57 Score=27.07 Aligned_cols=13 Identities=31% Similarity=0.217 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 023690 68 ELQSQIESIYSSL 80 (278)
Q Consensus 68 ~Lq~r~s~le~~l 80 (278)
.|+.|+..++..+
T Consensus 4 ~l~~~~~~~~~~~ 16 (192)
T 2gkw_A 4 LLESQLSRHDQML 16 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4444554444443
No 387
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=31.42 E-value=93 Score=23.67 Aligned_cols=17 Identities=12% Similarity=0.513 Sum_probs=9.7
Q ss_pred hhhhhHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLA 60 (278)
Q Consensus 44 RVs~LE~E~~~LR~~La 60 (278)
.|..||..|..++....
T Consensus 9 sVk~~eT~iaa~~~ev~ 25 (74)
T 1avy_A 9 KIKAIETDIASVRQEVN 25 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhcccccchhhhheeec
Confidence 45556666666655543
No 388
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=31.39 E-value=47 Score=29.66 Aligned_cols=39 Identities=21% Similarity=0.195 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (278)
Q Consensus 32 larkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~ 71 (278)
|.+.|+--- -.=+..|+.++..|-..|.+||.+|.+++.
T Consensus 133 l~~~LilPL-l~~~~~l~~q~~~L~~lL~~KD~eI~~y~~ 171 (235)
T 2qm4_A 133 VSQHLIRPL-MGMSLALQCQVRELATLLHMKDLEIQDYQE 171 (235)
T ss_dssp HHHHTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554332 334568899999999999999999999653
No 389
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=31.30 E-value=1.7e+02 Score=26.36 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=21.8
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 103 NTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 103 ~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
..-|+|+.=..|...++..|..=|.+|++
T Consensus 171 ~~~k~L~~~~~kv~~vr~~leelLddDeD 199 (261)
T 3rkg_A 171 IKSKDLTLFYQKTLLIRDLLDELLENDDD 199 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 34456777777778888888888888876
No 390
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=31.28 E-value=2.6e+02 Score=24.25 Aligned_cols=20 Identities=15% Similarity=0.406 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023690 65 RIAELQSQIESIYSSLSDKL 84 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l~~rL 84 (278)
++.+|++++.-+-.+|..+|
T Consensus 155 ~veelk~~l~P~~ee~r~kl 174 (243)
T 2a01_A 155 HVDALRTHLAPYSDELRQRL 174 (243)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHH
Confidence 34444444444444444333
No 391
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=31.26 E-value=1.6e+02 Score=21.77 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq 70 (278)
+.+.|..++..|..++..+...+.+++
T Consensus 9 ~f~~lq~~~~~l~~q~~~l~~~~~e~~ 35 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQTVEMQINETQ 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444444
No 392
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=31.10 E-value=2.9e+02 Score=28.40 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (278)
Q Consensus 28 EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (278)
.|.+|..++ ..+..+|..+|.++..|.+.-.+-+=..++++.+
T Consensus 138 ~~~~i~~~v--~~lr~~~q~~e~~ik~Le~~Qe~f~~~y~~~~~~ 180 (683)
T 1yvl_A 138 KQKELDSKV--RNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 180 (683)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466666555 5677889999999999988777777666666544
No 393
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=31.01 E-value=3.2e+02 Score=26.57 Aligned_cols=20 Identities=25% Similarity=0.147 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023690 61 EKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l 80 (278)
+.|+...++.+..+.||.-+
T Consensus 524 ~~d~~~~~~~~~~n~~e~~~ 543 (605)
T 4b9q_A 524 EADRKCEELVQTRNQGDHLL 543 (605)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555443
No 394
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=30.90 E-value=1.1e+02 Score=22.62 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=28.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 42 atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
+.|+..++.|+..|+.+.+.-...|.+.+.|+..|-
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLs 44 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLS 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456777888888888888888888888887766554
No 395
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=30.89 E-value=2.3e+02 Score=23.70 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=3.6
Q ss_pred hhhHHHHH
Q 023690 27 FEQLDVAR 34 (278)
Q Consensus 27 ~EQLdlar 34 (278)
.++.+.|.
T Consensus 15 ~~~~~~al 22 (171)
T 2p2u_A 15 IRQAEGAL 22 (171)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34455443
No 396
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.78 E-value=1.7e+02 Score=22.10 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 50 SEHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
.+|..+|..|..=...+.+|++..
T Consensus 12 ~~v~~I~~~i~~i~~~v~~l~~~~ 35 (127)
T 1ez3_A 12 EQVEEIRGFIDKIAENVEEVKRKH 35 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444444333
No 397
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=30.19 E-value=65 Score=26.14 Aligned_cols=7 Identities=0% Similarity=0.349 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 023690 71 SQIESIY 77 (278)
Q Consensus 71 ~r~s~le 77 (278)
.++..++
T Consensus 14 ~~i~~l~ 20 (122)
T 3viq_A 14 KEVRNLQ 20 (122)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 398
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=30.06 E-value=2.4e+02 Score=23.51 Aligned_cols=17 Identities=18% Similarity=0.407 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023690 64 SRIAELQSQIESIYSSL 80 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l 80 (278)
+.|++|+..+..++..+
T Consensus 23 r~ia~l~r~~~~i~~~~ 39 (171)
T 2p2u_A 23 AEIATIDRKVGEIEAQM 39 (171)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 399
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=29.91 E-value=1.6e+02 Score=22.09 Aligned_cols=15 Identities=40% Similarity=0.510 Sum_probs=6.8
Q ss_pred hhhhhHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQ 58 (278)
Q Consensus 44 RVs~LE~E~~~LR~~ 58 (278)
|...|=.-...||..
T Consensus 17 RR~~ln~~f~~Lr~~ 31 (88)
T 1nkp_A 17 RRNELKRSFFALRDQ 31 (88)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 400
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=29.77 E-value=8.7 Score=32.41 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=40.0
Q ss_pred CCCChHHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 023690 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSR 65 (278)
Q Consensus 11 ~F~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~ 65 (278)
+-.=|+||+++=|.|=|++|.|...++. +|.+.|.+=+.++|.+..+.-+|
T Consensus 100 ~G~tp~eIl~~d~~~f~~~lGL~~~LSp----sR~NGl~am~~~ik~~a~~~~~~ 150 (155)
T 1ni7_A 100 EGKTAAELQAQSPLALFDELGLRAQLSA----SRSQGLNALSEAIIAATKQVLEH 150 (155)
T ss_dssp TTCCHHHHHHSCTHHHHHHHTSSSSSCH----HHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcCc----hHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456999999988788999999887764 78999988888888877665443
No 401
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=29.65 E-value=3.6e+02 Score=25.40 Aligned_cols=36 Identities=22% Similarity=0.150 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 96 KENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 96 ~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
++...|...++.|..++..||.--+.+-..|++--.
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLL 99 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888888998888888877777777665543
No 402
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=29.63 E-value=49 Score=22.92 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 023690 64 SRIAELQSQIESIYSSLS 81 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l~ 81 (278)
..|.+|+++|..||..|.
T Consensus 49 ~~~~~Le~ri~~Le~~l~ 66 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLT 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555443
No 403
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=29.55 E-value=28 Score=28.50 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=36.7
Q ss_pred CCCChHHHHhcCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 023690 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAE 61 (278)
Q Consensus 11 ~F~lp~eil~vLP~DP~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaE 61 (278)
+-.=|+||+++=| |=|++|.|...++ .+|.+.|.+=+.++|.+..+
T Consensus 87 ~G~tp~eIl~~d~-~~~~~lGL~~~LS----psR~nGl~am~~~ik~~a~~ 132 (136)
T 1wlo_A 87 EGESPEAVLEVPP-GFYRGYGLEEFFT----PLRLRGLEAALLRLQAQVRK 132 (136)
T ss_dssp TTCCTTTTTSSCT-TTTTTTTSHHHHT----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCH-HHHHHcCchhhcC----chHHHHHHHHHHHHHHHHHH
Confidence 4456899999888 7899999998776 57888888888888776543
No 404
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=29.41 E-value=72 Score=28.03 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023690 82 DKLGQAQADKERLSKENEALTN 103 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~ 103 (278)
++......+|.+|++||+.|..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777888888888888864
No 405
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=29.33 E-value=1.9e+02 Score=21.98 Aligned_cols=52 Identities=10% Similarity=0.362 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHH-HH
Q 023690 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERL---SKENEALTNTVRKLQRDVSK-LE 116 (278)
Q Consensus 61 EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL---~~E~~~La~TvKkL~rDvaK-LE 116 (278)
+|...|.+++..+..++.-|. +-.-|...+ ...|..+.+.|+.-.+||.+ |+
T Consensus 31 ~Rk~~i~~ie~~ldEA~ell~----qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk 86 (97)
T 3onj_A 31 QRNTTLKHVEQQQDELFDLLD----QMDVEVNNSIGDASERATYKAKLREWKKTIQSDIK 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666555554443 444444444 24577777888888888877 74
No 406
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.33 E-value=2.2e+02 Score=22.88 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023690 60 AEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 60 aEKd~~i~~Lq~r~s~le~~l~ 81 (278)
.+||..|..|+..+..|-.+|.
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele 32 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLE 32 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888877777775
No 407
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=29.29 E-value=2.6e+02 Score=29.50 Aligned_cols=54 Identities=6% Similarity=-0.008 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHHH
Q 023690 67 AELQSQIESIYSSLS---DKLG-QAQADKERLSKENEALTNTVRKLQRDV--SKLEVFRK 120 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~---~rL~-~a~ee~~kL~~E~~~La~TvKkL~rDv--aKLE~FKk 120 (278)
..|.+++..+|..|. +++. ...+...+|.+++=.-+..|.+-..+| .+.+.+|.
T Consensus 914 qallkKhea~e~dl~a~e~ri~~~l~~~a~~L~~~~y~~~~~I~~R~~~l~~~~W~~L~~ 973 (995)
T 2ycu_A 914 QAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKS 973 (995)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSCSSHHHHHHHHTTTHHHHHHHHHHHHTHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346678888888887 5665 677777788777766666666666665 46666653
No 408
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=29.06 E-value=2.3e+02 Score=23.50 Aligned_cols=71 Identities=20% Similarity=0.347 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (278)
..+|..+...||.+| ..++.+++.++.-+=..|+ ....+....|...-.-++.-+++-.+ .++|.||.+|+
T Consensus 73 ~~~l~~~~~~Lr~~l---~kdlee~r~~l~P~~~e~~---~~~~~~~e~lr~~l~Py~~el~~~~~--~~~e~Lr~~L~ 143 (185)
T 3r2p_A 73 WDNLEKETEGLRQEM---SKDLEEVKAKVQPYLDDFQ---KKWQEEMELYRQKVEPLRAELQEGAR--QKLHELQEKLS 143 (185)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHTTTTTTSH
T ss_pred HHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHH
No 409
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=29.04 E-value=22 Score=29.75 Aligned_cols=23 Identities=17% Similarity=0.325 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHH---HHHHHhhhHH
Q 023690 91 KERLSKENEALTN---TVRKLQRDVS 113 (278)
Q Consensus 91 ~~kL~~E~~~La~---TvKkL~rDva 113 (278)
..+-..||..|+. .-.+|-.|..
T Consensus 75 r~~~~eEKrkLAqLQ~AY~~LfqeYd 100 (130)
T 3cl3_D 75 RQAASEEKRKLAQLQVAYHQLFQEYD 100 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555543 3344444443
No 410
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=28.71 E-value=98 Score=26.92 Aligned_cols=38 Identities=18% Similarity=0.388 Sum_probs=20.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
|-.|+-.||.|-=.|-.++..++-.|.+|..||+.|..
T Consensus 70 Lh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrG 107 (180)
T 1j1e_C 70 LHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHh
Confidence 33445555555555555555555555555555555543
No 411
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=28.52 E-value=2.6e+02 Score=25.02 Aligned_cols=41 Identities=27% Similarity=0.265 Sum_probs=22.0
Q ss_pred HHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLA-----EKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~La-----EKd~~i~~Lq~r~s~le~~l~ 81 (278)
+..-+..+|.++..|-+++- +--+.|..|++.+..+...+.
T Consensus 169 ~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~ 214 (339)
T 4ev6_A 169 YSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLI 214 (339)
T ss_dssp HHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666655555442 223455666666666666554
No 412
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=28.33 E-value=88 Score=25.53 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=43.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
..++.++..++.|+..+-.--.+|+-....|. .|+ -|++...+..+|+.++-|+|.- .-|+.....-
T Consensus 21 ~~~~kkl~~~~~el~~iekGFL~kel~~eal~----kld----Krik~~~E~~MK~LE~lDsl~i-----~e~~~~~R~k 87 (114)
T 1hx1_B 21 EKIADQLEELNKELTGIQQGFLPKDLQAEALC----KLD----RRVKATIEQFMKILEEIDTLIL-----PENFKDSRLK 87 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHH----TTH----HHHHHHHHHHHHHHHHHTTCCC-----CTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccccHhHHHHHH----HHH----HHHHHHHHHHHHHHHHhhcccC-----ChhHHHHHHH
Confidence 55666666666666666666665554333321 111 4566777788888877777642 4444444444
Q ss_pred HHHHHhhcc
Q 023690 119 RKTLVQSLK 127 (278)
Q Consensus 119 Kk~LmqSLq 127 (278)
||.|+..+|
T Consensus 88 RK~lV~~iQ 96 (114)
T 1hx1_B 88 RKGLVKKVQ 96 (114)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
No 413
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=28.16 E-value=1.9e+02 Score=21.73 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhhHHH
Q 023690 98 NEALTNTVRKLQRDVSK 114 (278)
Q Consensus 98 ~~~La~TvKkL~rDvaK 114 (278)
+..+.+.+..|.+||.-
T Consensus 44 R~~~E~d~~~LrkdvD~ 60 (86)
T 3swk_A 44 REEAENTLQSFRQDVDN 60 (86)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHhhHHH
Confidence 33444444555555443
No 414
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=28.09 E-value=1.6e+02 Score=20.87 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~l 76 (278)
+..++....+=+..+.+|+..+..|
T Consensus 14 a~~~~~~~~~i~~~l~~l~~~v~~l 38 (94)
T 3fav_B 14 ASAIQGNVTSIHSLLDEGKQSLTKL 38 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333344444444444444
No 415
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=27.94 E-value=3.8e+02 Score=25.09 Aligned_cols=45 Identities=16% Similarity=0.155 Sum_probs=20.3
Q ss_pred chhhHHHHHHHHH----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023690 26 PFEQLDVARKITS----IAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 26 P~EQLdlarkIts----~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq 70 (278)
-.+||--+.||.+ =|...+..+|..++..|.+-...-..-+.-|+
T Consensus 8 sqeqLSSGkRInsaSDDPag~aia~~L~sqi~~l~Q~~rN~~da~S~Lq 56 (326)
T 3k8w_A 8 SLQRLSSGLRINSAKDDAAGLAISDRMTAQIKGLTQAQRNANDGISLAQ 56 (326)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888999983 34566777778888888777655444444443
No 416
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=27.81 E-value=2.3e+02 Score=22.45 Aligned_cols=13 Identities=23% Similarity=0.434 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 023690 65 RIAELQSQIESIY 77 (278)
Q Consensus 65 ~i~~Lq~r~s~le 77 (278)
+++.|++++..|-
T Consensus 19 e~~~l~~~~~el~ 31 (125)
T 1joc_A 19 EIEKLQTKVLELQ 31 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 3444444443333
No 417
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=27.73 E-value=99 Score=27.91 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=15.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~ 78 (278)
+-+||..+|..|..|-..+.|=.+.....++++-.++.
T Consensus 4 lnsRvd~~EErIs~le~rleei~q~eq~~ekrik~ne~ 41 (233)
T 2yko_A 4 LRSRCDQLEERVSAAEDEINEIKREGKFREKRIKRNEQ 41 (233)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555544444444444444444444444444443
No 418
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=27.44 E-value=58 Score=25.45 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 023690 87 AQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 87 a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
..++..+|.+|...|...++.|.
T Consensus 12 l~~~~~~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 12 LEDKVEELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444
No 419
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=27.42 E-value=1.2e+02 Score=24.59 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.8
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLA 60 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~La 60 (278)
++.++.+|+-|-..||.+|.
T Consensus 13 LaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 13 MVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999986
No 420
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=27.27 E-value=1.3e+02 Score=30.55 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (278)
Q Consensus 27 ~EQLdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r 72 (278)
..|++|-.++ ..+..+|..+|.++..|.+.-.+=+=..++++.+
T Consensus 13 ~k~~ei~~~v--~~lr~~~q~~e~~ik~Le~~Qe~f~~~yk~~q~~ 56 (596)
T 1bg1_A 13 EKQQMLEQHL--QDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQ 56 (596)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 4567775555 4678899999999999988777755555555544
No 421
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=27.25 E-value=1.8e+02 Score=26.87 Aligned_cols=16 Identities=25% Similarity=0.345 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 023690 65 RIAELQSQIESIYSSL 80 (278)
Q Consensus 65 ~i~~Lq~r~s~le~~l 80 (278)
-+..|++++..|+..+
T Consensus 248 ~~~~~~~~~~~~~~~~ 263 (426)
T 1lrz_A 248 YIKELNEERDILNKDL 263 (426)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555544444444
No 422
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=27.21 E-value=1.7e+02 Score=20.69 Aligned_cols=7 Identities=14% Similarity=0.150 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 023690 68 ELQSQIE 74 (278)
Q Consensus 68 ~Lq~r~s 74 (278)
.|+..+.
T Consensus 34 ~L~~~v~ 40 (99)
T 3zbh_A 34 RLDQMSH 40 (99)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 423
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=27.18 E-value=96 Score=20.33 Aligned_cols=6 Identities=17% Similarity=0.512 Sum_probs=2.3
Q ss_pred hhhhHH
Q 023690 45 VSDLES 50 (278)
Q Consensus 45 Vs~LE~ 50 (278)
|++||.
T Consensus 2 MnQLEd 7 (33)
T 3c3g_A 2 MKXIEX 7 (33)
T ss_dssp HHHHHH
T ss_pred ccHHHH
Confidence 333333
No 424
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=27.11 E-value=42 Score=24.89 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 50 SEHSALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
.+...|+.+=.+=|+.|..|+.+....+
T Consensus 17 ~~f~~L~~eH~~LD~~I~~le~~~~~~~ 44 (76)
T 1zhc_A 17 PHFDKIFEKHNQLDDDIKTAEQQNASDA 44 (76)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 3345555555555555555555444333
No 425
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=27.09 E-value=1.9e+02 Score=21.33 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=15.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAEL 69 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~L 69 (278)
+-.++..|..++..|..++.|=+..+.+|
T Consensus 13 lq~~~~~l~~q~~~l~~~~~e~~~~~~EL 41 (107)
T 1fxk_A 13 LQQQAQAISVQKQTVEMQINETQKALEEL 41 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555
No 426
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=26.91 E-value=1.8e+02 Score=24.57 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023690 53 SALRSQLAEKDSRIAELQS 71 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~ 71 (278)
..|+++|.+.++.|++|++
T Consensus 8 ee~~e~L~~~e~l~~el~~ 26 (184)
T 4egx_A 8 EEAIERLKETEKIIAELNE 26 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4677788877777777753
No 427
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=26.89 E-value=3.4e+02 Score=24.23 Aligned_cols=34 Identities=12% Similarity=0.234 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 023690 48 LESEHSALRSQLAEKDS--------RIAELQSQIESIYSSLS 81 (278)
Q Consensus 48 LE~E~~~LR~~LaEKd~--------~i~~Lq~r~s~le~~l~ 81 (278)
|..++..||++|.-... ++.+|+.++..+-..|.
T Consensus 42 l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~~~el~ 83 (273)
T 3s84_A 42 IGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPYAQRME 83 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34455566666553322 33445555554444444
No 428
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=26.79 E-value=45 Score=26.73 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=10.5
Q ss_pred CchhhHHHHHHHH
Q 023690 25 DPFEQLDVARKIT 37 (278)
Q Consensus 25 DP~EQLdlarkIt 37 (278)
---|||.||+.|.
T Consensus 20 aTaeQ~rLAq~i~ 32 (104)
T 1wj7_A 20 ATAEQIRLAQMIS 32 (104)
T ss_dssp SSHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHh
Confidence 3468999999886
No 429
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=26.79 E-value=4.4e+02 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.087 Sum_probs=22.4
Q ss_pred HHHHH----HHH-HHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 97 ENEAL----TNT-VRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 97 E~~~L----a~T-vKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
+.+.| ... ++.|..++..||.--+.|-..|++--.
T Consensus 100 ~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 139 (484)
T 3lss_A 100 QVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLML 139 (484)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556 666 888888888888877777777665443
No 430
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=26.76 E-value=91 Score=24.27 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 023690 88 QADKERLSKENEALTNTVRKL 108 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL 108 (278)
..+.++|..|+..+..-+..+
T Consensus 61 ~~e~~~L~~e~~~~~~e~d~~ 81 (90)
T 2wt7_B 61 IQQVEQLKQEVSRLARERDAY 81 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 431
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=26.74 E-value=3.5e+02 Score=24.26 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q 023690 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA-ELQSQIESIYSSLS 81 (278)
Q Consensus 30 LdlarkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~-~Lq~r~s~le~~l~ 81 (278)
||--.||..+|..+|...- |++..=-++.+.-+.|. .|+.-...|-.+|.
T Consensus 58 ~Da~qKvad~A~~s~g~s~--elG~~L~~i~~~hr~ie~~l~~~~k~~~~eli 108 (253)
T 2d1l_A 58 LDAFQKVADMATNTRGGTR--EIGSALTRMCMRHRSIEAKLRQFSSALIDCLI 108 (253)
T ss_dssp HHHHHHHHHHHHTSSTHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHcccCCcchH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666666553211 44444444555444443 33333333333333
No 432
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=26.70 E-value=38 Score=26.16 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=8.8
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQL 59 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~L 59 (278)
|..|+..||.++..|..+|
T Consensus 2 ~~~~l~~l~~~~~~l~~~l 20 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKL 20 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555444444433
No 433
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=26.65 E-value=2e+02 Score=22.88 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQ 109 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~ 109 (278)
.+|..|.+.++||.+-|.++-.+++-.+
T Consensus 28 kql~~A~e~~eKl~KKrsS~~gs~~~ah 55 (101)
T 3teq_A 28 KQLMVAKEGAEKIKKKRNTLFGTFHVAH 55 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhchheeeehhc
Confidence 3455999999999999999998887654
No 434
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.52 E-value=2.4e+02 Score=22.33 Aligned_cols=21 Identities=5% Similarity=0.142 Sum_probs=9.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHH
Q 023690 38 SIAISTRVSDLESEHSALRSQ 58 (278)
Q Consensus 38 s~A~atRVs~LE~E~~~LR~~ 58 (278)
+-.|+.-|.++=.-+..|+..
T Consensus 16 ~~~is~~I~~In~~vs~l~r~ 36 (130)
T 2dnx_A 16 IQTCSGNIQRISQATAQIKNL 36 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443
No 435
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=26.48 E-value=57 Score=28.10 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
+..|..++..|.+++.+||-++
T Consensus 150 v~~L~~~ie~kn~~l~ele~k~ 171 (172)
T 4e8u_A 150 VQNLRQLVEEKKKDMKEIEELC 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4556666677777777776553
No 436
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=26.30 E-value=60 Score=27.78 Aligned_cols=7 Identities=14% Similarity=0.667 Sum_probs=3.2
Q ss_pred HHHHHHH
Q 023690 114 KLEVFRK 120 (278)
Q Consensus 114 KLE~FKk 120 (278)
|+++|-+
T Consensus 81 kI~nfS~ 87 (228)
T 1flk_A 81 KIRDYKR 87 (228)
T ss_dssp EEECHHH
T ss_pred EECCHHH
Confidence 3455533
No 437
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=26.21 E-value=2.1e+02 Score=21.54 Aligned_cols=67 Identities=12% Similarity=0.218 Sum_probs=38.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
+++++..|+...+..+.+-=+.+-+=. +||....++-+.|+.+=.....+.++|+|.. -.+++|-.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~Rg-----------ekL~~L~~kt~~L~~~s~~F~~~A~~l~rkm-wwkn~K~~i 72 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERD-----------QKLSELDDRADALQAGASQFETSAAKLKRKY-WWKNLKMMI 72 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 556666666666655543322222222 4444555666677777777777888887764 355555444
No 438
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=26.19 E-value=90 Score=27.48 Aligned_cols=19 Identities=11% Similarity=0.055 Sum_probs=9.2
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 023690 105 VRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 105 vKkL~rDvaKLE~FKk~Lm 123 (278)
+|-|.+++-+...-+..|.
T Consensus 56 arilAkelVR~Rk~~~rl~ 74 (218)
T 3frt_A 56 CIVLAKEMIRSRKAVSKLY 74 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555544444443
No 439
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=25.75 E-value=2.6e+02 Score=22.37 Aligned_cols=11 Identities=27% Similarity=0.105 Sum_probs=5.0
Q ss_pred hhhHHHHHHHH
Q 023690 27 FEQLDVARKIT 37 (278)
Q Consensus 27 ~EQLdlarkIt 37 (278)
.++|...+.|.
T Consensus 57 ~~dl~~l~~I~ 67 (148)
T 3gpv_A 57 EEALKYLEMIL 67 (148)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34454444443
No 440
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=25.74 E-value=1.8e+02 Score=20.56 Aligned_cols=17 Identities=29% Similarity=0.522 Sum_probs=9.1
Q ss_pred HhhhhhHHHHHHHHHHH
Q 023690 43 TRVSDLESEHSALRSQL 59 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~L 59 (278)
.++.++..|+...+..+
T Consensus 9 d~l~~vq~~l~evk~iM 25 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIM 25 (65)
T ss_dssp -CHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 35555666666555554
No 441
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=25.55 E-value=2.8e+02 Score=22.81 Aligned_cols=27 Identities=19% Similarity=0.320 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
.+|.++..|-.-...-+.-+.-+|.|+
T Consensus 2 ~me~avdkLe~mFqKA~sDLdyiq~RL 28 (123)
T 4aj5_K 2 HMEAEVDKLELMFQKAESDLDYIQYRL 28 (123)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 467777777777666666666666553
No 442
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=25.50 E-value=1.5e+02 Score=25.83 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 83 KLGQAQADKERLSKENEALTNTVRK 107 (278)
Q Consensus 83 rL~~a~ee~~kL~~E~~~La~TvKk 107 (278)
+.....++|.+|++||+.|..--.+
T Consensus 153 ~~~~L~~~n~~LqkeNeRL~~E~n~ 177 (184)
T 3w03_C 153 TIAENQAKNEHLQKENERLLRDWND 177 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555666666655544433
No 443
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=25.43 E-value=1.7e+02 Score=26.97 Aligned_cols=55 Identities=5% Similarity=0.205 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 023690 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 59 LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~F 118 (278)
|.+=.+.+.+|++++..++..|. ......|..+....|.+++..+.+.+...+.|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (426)
T 1lrz_A 249 IKELNEERDILNKDLNKALKDIE-----KRPENKKAHNKRDNLQQQLDANEQKIEEGKRL 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh-----hCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455566666666665553 22223455556666667777776666666555
No 444
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=25.31 E-value=2.1e+02 Score=21.33 Aligned_cols=32 Identities=9% Similarity=0.219 Sum_probs=21.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 023690 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (278)
Q Consensus 39 ~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq 70 (278)
..+-.++..|..++..|..++.|=+..+.+|+
T Consensus 16 ~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 16 ESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777777777776666666664
No 445
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=25.25 E-value=68 Score=31.68 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 023690 66 IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (278)
Q Consensus 66 i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqS 125 (278)
-.+|+.|+-.++.+.. .-|..+.+....|.++......-...|.+....+|.-++.|..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e~~~l~~~~~~~e~~~~~l~~~ 399 (575)
T 2i1j_A 337 QQEYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAAKEELEQRQNELQAMMQRLEET 399 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777776665 55556666666677666666666667777766666666555544
No 446
>1tu3_F RAB GTPase binding effector protein 1; rabaptin5, effector-binding, protein transport; HET: GNP; 2.31A {Homo sapiens} SCOP: h.1.27.2
Probab=25.04 E-value=39 Score=26.02 Aligned_cols=31 Identities=16% Similarity=0.184 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 023690 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (278)
Q Consensus 90 e~~kL~~E~~~La~TvKkL~rDvaKLE~FKk 120 (278)
++++|.+.+..|.+.|..|+.+|+--|+.-|
T Consensus 6 ~k~~Le~~~~e~k~kv~~LQ~eLdtsE~VQr 36 (79)
T 1tu3_F 6 AKATVEQLMFEEKNKAQRLQTELDVSEQVQR 36 (79)
T ss_dssp ---------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555444
No 447
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.94 E-value=66 Score=30.76 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 68 ~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
+|+.|...||.++. ....+..+|..|+..|...++.+...
T Consensus 29 ~l~~r~~~le~e~~----~l~~e~~r~~~e~~~~~~~~~~~~~~ 68 (434)
T 4b4t_M 29 ELQTRAKLLDNEIR----IFRSELQRLSHENNVMLEKIKDNKEK 68 (434)
T ss_dssp ------------CH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332 33445555555555555555554433
No 448
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=24.89 E-value=2.3e+02 Score=25.66 Aligned_cols=26 Identities=27% Similarity=0.400 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIE 74 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s 74 (278)
|+-+..|+.+|.||+.+..+.+..+.
T Consensus 110 eA~laal~erLkek~~~aeeVRr~~~ 135 (240)
T 4f61_I 110 EAHFAAMLERLQEKDKHAEEVRQRAI 135 (240)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45588899999999999888877653
No 449
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=24.84 E-value=2e+02 Score=20.77 Aligned_cols=55 Identities=20% Similarity=0.413 Sum_probs=28.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~--~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
++.++..|+...+..+.+- ++.-|. .+|....+.-..|..+=.....+.++|+|.
T Consensus 9 ~l~~vq~el~ev~~iM~~N-------------I~~vL~RgekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 65 (74)
T 2nps_A 9 KIKHVQNQVDEVIDVMQEN-------------ITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQ 65 (74)
T ss_dssp SSHHHHTTHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666655554321 222222 344445555555666666666666666664
No 450
>3rki_A Fusion glycoprotein F0; fusion protein, viral protein; HET: NAG; 3.20A {Human respiratory syncytial virus}
Probab=24.79 E-value=3.7e+02 Score=26.98 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 36 Its~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
||+-+--.+..+.+++|.+||+.++.=.+.+.+|.+-++.|-.+++
T Consensus 139 ITAavAL~qA~qNA~nIlrLKeSI~~TNeAV~elt~gls~lavAV~ 184 (528)
T 3rki_A 139 IASGVAVSKVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL 184 (528)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443334567889999999999999999999999999998888886
No 451
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=24.75 E-value=2.3e+02 Score=21.57 Aligned_cols=20 Identities=20% Similarity=0.234 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 023690 46 SDLESEHSALRSQLAEKDSR 65 (278)
Q Consensus 46 s~LE~E~~~LR~~LaEKd~~ 65 (278)
..||.=+.+|+.-+.||...
T Consensus 27 e~Lee~leKl~~VveERree 46 (86)
T 3nr7_A 27 ETLEEMLEKLEVVVNERREE 46 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 452
>3f31_A Spectrin alpha chain, brain; LONE helix followed by A triple helical bundle, actin cappin binding, alternative splicing, calcium; 2.30A {Homo sapiens} SCOP: a.7.1.0
Probab=24.61 E-value=2.5e+02 Score=21.91 Aligned_cols=61 Identities=8% Similarity=0.072 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRI-----------AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i-----------~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~Tv 105 (278)
+..+..++..+..=|.||.... ..+.+++..++.++. .++....+...+|..++---+..|
T Consensus 48 l~~F~~d~~el~~Wi~ek~~~~~~~~~~d~~~v~~~l~kH~afe~El~a~~~~l~~v~~~g~~Li~~~~~~~~~I 122 (149)
T 3f31_A 48 FQFFQRDAEELEKWIQEKLQIASDENYKDPTNLQGKLQKHQAFEAEVQANSGAIVKLDETGNLMISEGHFASETI 122 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSSCSSSCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence 3444456666666677776653 456677888888888 777777777777777654333333
No 453
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=24.56 E-value=2.4e+02 Score=21.59 Aligned_cols=48 Identities=19% Similarity=0.275 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (278)
Q Consensus 33 arkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l 80 (278)
|-.|.-+++..||-.|=.|-..|+..+.--......++.|+..+|.+|
T Consensus 27 aLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 27 ALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555555555444
No 454
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=24.52 E-value=2.1e+02 Score=24.10 Aligned_cols=60 Identities=12% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 52 HSALRSQLAEK--------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 52 ~~~LR~~LaEK--------d~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+.+..+.+.+| |....++++++..++..+. ....+...+.+....+.+....|...+..|
T Consensus 32 ~~Ra~q~~~~k~G~~e~T~D~~Fe~~~~~f~~~e~~~~----~l~k~~k~y~~~~~~~~~~~~~l~~~~~~l 99 (251)
T 2fic_A 32 LTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGT----RLQKDLRTYLASVKAMHEASKKLNECLQEV 99 (251)
T ss_dssp --------------------CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 455
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=24.51 E-value=2.8e+02 Score=22.43 Aligned_cols=10 Identities=10% Similarity=0.365 Sum_probs=4.2
Q ss_pred HHHhhhhhHH
Q 023690 41 ISTRVSDLES 50 (278)
Q Consensus 41 ~atRVs~LE~ 50 (278)
|...|..|+.
T Consensus 21 i~~~v~~L~~ 30 (196)
T 1fio_A 21 YDHTINQVDS 30 (196)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 456
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=24.38 E-value=1.8e+02 Score=20.20 Aligned_cols=30 Identities=7% Similarity=0.310 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 82 DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 82 ~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
.+|....+.-..|..+=.....+.++|+|.
T Consensus 30 ekLd~L~~ks~~L~~~s~~F~~~a~~l~r~ 59 (61)
T 3b5n_A 30 ERLTSIEDKADNLAVSAQGFKRGANRVRKA 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555665556666666666653
No 457
>3o6x_A Glutamine synthetase; type III, beta barrel,dodecamer, ligas; HET: P3S ADP; 3.50A {Bacteroides fragilis}
Probab=24.26 E-value=4.6e+02 Score=27.23 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 023690 99 EALTNTVRKLQRDVSKLEVF 118 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~F 118 (278)
+...-.+.+|...+.+||.+
T Consensus 692 ~~v~~~m~~~R~~~D~lE~~ 711 (729)
T 3o6x_A 692 ETVRPYLESIRDHIDHLEME 711 (729)
T ss_dssp HHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555666777778888865
No 458
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=24.12 E-value=2.6e+02 Score=24.60 Aligned_cols=30 Identities=20% Similarity=0.491 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 52 ~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
+..|..+|.+....+.+|++++-.+.+.+.
T Consensus 61 ~~~l~~~l~~l~~e~~el~d~~lR~~AEfe 90 (213)
T 4ani_A 61 LAAAKAQIAELEAKLSEMEHRYLRLYADFE 90 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555444
No 459
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=24.07 E-value=3.5e+02 Score=28.20 Aligned_cols=43 Identities=14% Similarity=0.376 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 023690 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d~~ 131 (278)
-+..||.+|.+.|...++.|..-|+..+.+++.+..-|.+.-+
T Consensus 696 le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~ 738 (767)
T 2xkj_E 696 LEEMEIRHEQDELSAKAAIIREQLENPESLKNLIISELKEDAK 738 (767)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999888888888777777766544
No 460
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=24.06 E-value=2.9e+02 Score=22.43 Aligned_cols=20 Identities=5% Similarity=0.255 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023690 50 SEHSALRSQLAEKDSRIAEL 69 (278)
Q Consensus 50 ~E~~~LR~~LaEKd~~i~~L 69 (278)
.++..++..|..=...+..|
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l 62 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAV 62 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444333333333
No 461
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=23.87 E-value=2.7e+02 Score=23.16 Aligned_cols=70 Identities=14% Similarity=0.235 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS-KLEVFRKTLV 123 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDva-KLE~FKk~Lm 123 (278)
..+|..++..||.+|.. .+.+|+.++...=.+|+ ..-...+.+=|..|.--+..|...+. .+|.||++|.
T Consensus 90 ~~~l~~~~e~Lr~~L~~---d~EelR~~l~p~~~el~------~~l~~~~EelR~kl~P~~eeL~~~~~~~~eeLr~kL~ 160 (165)
T 1gs9_A 90 RARLSKELQAAQARLGA---DMEDVRGRLVQYRGEVQ------AMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLA 160 (165)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH------TSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhh
No 462
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=23.86 E-value=4.9e+02 Score=24.97 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 53 ~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
...++-+.++...+.+|...+.....++.+-|.++..+.. -.+.....+++++.+|++|
T Consensus 311 ~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~----~~~~~~~i~~~~~~~L~~l 369 (413)
T 4hpq_C 311 QKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKE----TAAKLSQILKSCETQLEQI 369 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 3344556667777788888888888888744444433333 4445555666666666655
No 463
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=23.84 E-value=3.1e+02 Score=24.07 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 023690 64 SRIAELQSQIESIYSSL 80 (278)
Q Consensus 64 ~~i~~Lq~r~s~le~~l 80 (278)
+....+..|+-.++.+|
T Consensus 96 ~~Ne~l~~~~~~l~l~L 112 (252)
T 3e98_A 96 RENDRLFDKTRRLVLDL 112 (252)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444433
No 464
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=23.76 E-value=1.9e+02 Score=20.25 Aligned_cols=24 Identities=8% Similarity=0.051 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 54 ALRSQLAEKDSRIAELQSQIESIY 77 (278)
Q Consensus 54 ~LR~~LaEKd~~i~~Lq~r~s~le 77 (278)
.++....+=+..+.+|+..+..|.
T Consensus 17 ~~~~~~~~l~~~l~~L~~~~~~L~ 40 (97)
T 2vs0_A 17 SYGQGSDQIRQILSDLTRAQGEIA 40 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333334444444444443
No 465
>3u0c_A Invasin IPAB, 62 kDa antigen; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.05A {Shigella flexneri} PDB: 3gz1_P
Probab=23.65 E-value=3.7e+02 Score=23.56 Aligned_cols=29 Identities=21% Similarity=0.347 Sum_probs=13.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 45 VSDLESEHSALRSQLAEKDSRIAELQSQI 73 (278)
Q Consensus 45 Vs~LE~E~~~LR~~LaEKd~~i~~Lq~r~ 73 (278)
+++||+.+..-+.+-.-..+.-.|+-++|
T Consensus 70 lTqL~nrL~~wlsQ~em~~qks~EFSD~~ 98 (201)
T 3u0c_A 70 LTALTNKITAWKSQQQARQQKNLEFSDKI 98 (201)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655554444443444444443333
No 466
>1a92_A Delta antigen; leucine zipper, coiled-coil, oligomerization; 1.80A {Hepatitis delta virus} SCOP: h.4.6.1 PDB: 1by0_A
Probab=23.59 E-value=1.5e+02 Score=21.05 Aligned_cols=28 Identities=18% Similarity=0.351 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 70 QSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 70 q~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (278)
++++..||..|. .+...+.+|.+||-=|
T Consensus 13 Rkk~eeler~lr----k~kk~iKklEdeNPWL 40 (50)
T 1a92_A 13 RKKLEELERDLR----KLKKKIKKLEEDNPWL 40 (50)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHCTTH
T ss_pred HHHHHHHHHHHH----HHHHHHHhhhccCCch
Confidence 455566665554 5555566666665433
No 467
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=23.53 E-value=2e+02 Score=22.68 Aligned_cols=61 Identities=23% Similarity=0.183 Sum_probs=25.5
Q ss_pred HHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 023690 40 AISTRVSDLESEHSAL--RSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEA 100 (278)
Q Consensus 40 A~atRVs~LE~E~~~L--R~~LaEKd~~i~~Lq~r~s~le~~l~-~rL~~a~ee~~kL~~E~~~ 100 (278)
++..++..+|..+..+ .+.+.+=...|..|++-|+..-.-|- =.++.+.+....|+...+.
T Consensus 39 ~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp~YD~R~~q~~i~~L~~~l~e 102 (111)
T 2l3l_A 39 TFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLAAYDLRQGQEALARLQAALAE 102 (111)
T ss_dssp HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666665544 22233333344444333332111110 3344555555555444333
No 468
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=23.49 E-value=1.2e+02 Score=23.90 Aligned_cols=48 Identities=10% Similarity=0.232 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 34 RKITSIAISTRVSDLE--------SEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (278)
Q Consensus 34 rkIts~A~atRVs~LE--------~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~ 81 (278)
--+...-||.|+..+. .....|+.++.+-.+.+..|++++..||.+|.
T Consensus 58 eTl~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 58 ETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555666665443 23566777777667777888888888887764
No 469
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=23.29 E-value=2.2e+02 Score=20.71 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 023690 49 ESEHSALRS 57 (278)
Q Consensus 49 E~E~~~LR~ 57 (278)
|..+.+||+
T Consensus 10 e~q~~kLKq 18 (58)
T 3a2a_A 10 ERQLLRLKQ 18 (58)
T ss_dssp -CHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444555554
No 470
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=23.09 E-value=1.9e+02 Score=19.87 Aligned_cols=13 Identities=15% Similarity=0.386 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 023690 65 RIAELQSQIESIY 77 (278)
Q Consensus 65 ~i~~Lq~r~s~le 77 (278)
.|.+||+|...||
T Consensus 24 kI~~lqkKlkeLe 36 (42)
T 2l5g_B 24 QISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 471
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=23.08 E-value=1.5e+02 Score=19.43 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 023690 89 ADKERLSKENEALTNTVRK 107 (278)
Q Consensus 89 ee~~kL~~E~~~La~TvKk 107 (278)
+|++.|.+.|..|..+|+.
T Consensus 14 qDIddlkrQN~~Le~Qir~ 32 (34)
T 1a93_B 14 QDIDDLKRQNALLEQQVRA 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 3444444444444444443
No 472
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=23.00 E-value=1.9e+02 Score=23.44 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
+......|+.++..+.+++.+..+...+| +..+-.+|. .-+....+...+-..........+..+.+.+.+|..
T Consensus 15 ~~~~~~~l~~~l~~~~~~l~~~~~~~~~~---~~~l~Helr~pL~~i~~~~~~l~~~~~~~~~~~~~l~~i~~~~~~l~~ 91 (268)
T 4ew8_A 15 VPRGSHMLQSALADRSAALAEAERLKRDF---VGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRAAATQLAR 91 (268)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHh
Q 023690 118 FRKTLVQ 124 (278)
Q Consensus 118 FKk~Lmq 124 (278)
+=..|+.
T Consensus 92 ~i~~l~~ 98 (268)
T 4ew8_A 92 SIDDVLD 98 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
No 473
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=22.99 E-value=2.5e+02 Score=21.27 Aligned_cols=20 Identities=10% Similarity=0.135 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 023690 57 SQLAEKDSRIAELQSQIESI 76 (278)
Q Consensus 57 ~~LaEKd~~i~~Lq~r~s~l 76 (278)
..|.|-++.|..|+--+..+
T Consensus 41 ~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 41 QQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 33344444444444333333
No 474
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=22.95 E-value=2.6e+02 Score=21.51 Aligned_cols=38 Identities=11% Similarity=0.225 Sum_probs=17.5
Q ss_pred HHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 023690 74 ESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (278)
Q Consensus 74 s~le~~l~------~rL~~a~ee~~kL~~E~~~La~TvKkL~rD 111 (278)
+.||.+++ ..|.....+|..++++-..-...-+.|..+
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e 60 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQNFASQLREAEARNRDLEAH 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544 444555555555555444333333334333
No 475
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=22.87 E-value=2.8e+02 Score=26.25 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 58 ~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
.+..=...++.+|++++..|..+- ..-+...+=+-.|..|++++-.|..
T Consensus 11 e~~~~~~~~~~vq~kA~~~E~~Yn----~~~dKmeqE~lrRRkLENSIdElKG 59 (333)
T 4etp_B 11 EIAALEKEIAALEKEISKQEKFYN----DTYNTVCKELLRSRRLENSIIEQKG 59 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 333334455666677777776665 2222222223345667777666543
No 476
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=22.83 E-value=2.9e+02 Score=21.99 Aligned_cols=30 Identities=27% Similarity=0.439 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q 023690 52 HSALRSQLAEKD-------SRIAELQSQIESIYSSLS 81 (278)
Q Consensus 52 ~~~LR~~LaEKd-------~~i~~Lq~r~s~le~~l~ 81 (278)
+..|+..|.++- ..+.+|+..|..|...|+
T Consensus 48 V~tL~~SL~kekaq~q~qq~~v~elqgEI~~Lnq~Lq 84 (99)
T 3ni0_A 48 VVTLQESLEKKVSQALEQQARIKELENEVTKLNQELE 84 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555332 235555555555554444
No 477
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=22.67 E-value=4.1e+02 Score=23.69 Aligned_cols=15 Identities=13% Similarity=0.313 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 023690 67 AELQSQIESIYSSLS 81 (278)
Q Consensus 67 ~~Lq~r~s~le~~l~ 81 (278)
.+|+.++.-+-.+|+
T Consensus 113 eelk~~L~Py~eelr 127 (273)
T 3s84_A 113 EELKGRLTPYADEFK 127 (273)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHhHHHHHH
Confidence 344444444443343
No 478
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=22.55 E-value=3.6e+02 Score=22.90 Aligned_cols=28 Identities=11% Similarity=0.338 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhhhHHHHH-HHHHHHHhhc
Q 023690 99 EALTNTVRKLQRDVSKLE-VFRKTLVQSL 126 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE-~FKk~LmqSL 126 (278)
+.....+.++..|-.+-+ -++.-+.+.|
T Consensus 101 ~~a~~~L~~~~~d~~~Y~~lL~~Li~eal 129 (233)
T 4efa_E 101 EETKEKLSGIANNRDEYKPILQSLIVEAL 129 (233)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 333444444444444332 2334444444
No 479
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=22.41 E-value=2.8e+02 Score=21.62 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 54 ALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 54 ~LR~~La-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
.||.+|. +....+..|.++++ .| ..+.-+.+|..+-..|.+..-++.|..+.-|.
T Consensus 37 ~LR~~l~~~l~~~~~~L~k~~~----~l-----~~l~qkeRL~~dF~~l~~~fQ~~qr~y~ek~~ 92 (97)
T 1hs7_A 37 ELRYKIETELIPNCTSVRDKIE----SN-----ILIHQNGKLSADFKNLKTKYQSLQQSYNQRKS 92 (97)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH----HS-----THHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----Hh-----cccchhhHHHHHHHHHHHHHHHHHHHHHHHHh
No 480
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.21 E-value=3.6e+02 Score=22.86 Aligned_cols=8 Identities=38% Similarity=0.680 Sum_probs=3.5
Q ss_pred hhhHHHHH
Q 023690 109 QRDVSKLE 116 (278)
Q Consensus 109 ~rDvaKLE 116 (278)
+|.+.|-+
T Consensus 73 QRn~~K~~ 80 (167)
T 4gkw_A 73 QRNLEKAD 80 (167)
T ss_dssp HHHHHHHH
T ss_pred HHhHHHHH
Confidence 44444443
No 481
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=22.17 E-value=3.4e+02 Score=24.10 Aligned_cols=11 Identities=45% Similarity=0.658 Sum_probs=5.2
Q ss_pred HHHHHHHHHHh
Q 023690 114 KLEVFRKTLVQ 124 (278)
Q Consensus 114 KLE~FKk~Lmq 124 (278)
+++.|++.|-.
T Consensus 160 ~~~~~~~~l~~ 170 (357)
T 3rrk_A 160 ELEAVRKALQE 170 (357)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 34555554443
No 482
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=22.15 E-value=4.3e+02 Score=23.70 Aligned_cols=36 Identities=14% Similarity=0.020 Sum_probs=16.1
Q ss_pred Cchh--hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 023690 25 DPFE--QLDVARKITSIAISTRVSDLESEHSALRSQLA 60 (278)
Q Consensus 25 DP~E--QLdlarkIts~A~atRVs~LE~E~~~LR~~La 60 (278)
=||| -|+.+-.-+...+-+++..||.++..+=+.|.
T Consensus 121 lPFEfraLEa~L~~v~~~Le~e~~~l~~~~~~~L~~L~ 158 (261)
T 3rkg_A 121 QFYEHRALESIFINVMSALETDFKLHSQICIQILNDLE 158 (261)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3565 24444444444444444444444443333343
No 483
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=22.14 E-value=3.3e+02 Score=22.40 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=54.1
Q ss_pred hhHHHHHHHHH------HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 023690 28 EQLDVARKITS------IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKEN 98 (278)
Q Consensus 28 EQLdlarkIts------~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~ 98 (278)
..|+-|.|.+. ..|-.|-..-|..+..|-.+|.+-.....+-..+|....+-|. ..|..+.++........
T Consensus 24 ~kLeeaek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~ 103 (147)
T 2b9c_A 24 QKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKC 103 (147)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555552 2344455555555667777777766666777777766666555 66666666666666666
Q ss_pred HHHHHHHHHHhhhHHHHHH
Q 023690 99 EALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 99 ~~La~TvKkL~rDvaKLE~ 117 (278)
..|...++-+...|--||.
T Consensus 104 ~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 104 AELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHH
Confidence 6666666666655555543
No 484
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=22.02 E-value=4.2e+02 Score=23.59 Aligned_cols=13 Identities=31% Similarity=0.547 Sum_probs=5.4
Q ss_pred CchhhHHHHHHHH
Q 023690 25 DPFEQLDVARKIT 37 (278)
Q Consensus 25 DP~EQLdlarkIt 37 (278)
+|-++.++-.++.
T Consensus 144 ~~~~Rr~~ld~~~ 156 (371)
T 3auy_A 144 KPSEKLETVAKLL 156 (371)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 3444444444443
No 485
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=21.91 E-value=2.2e+02 Score=26.06 Aligned_cols=9 Identities=33% Similarity=0.434 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q 023690 115 LEVFRKTLV 123 (278)
Q Consensus 115 LE~FKk~Lm 123 (278)
+|.||+.|+
T Consensus 182 veelr~~L~ 190 (307)
T 2l7b_A 182 LSAIRERLG 190 (307)
T ss_dssp HHHHHHHCS
T ss_pred HHHHHHHhh
Confidence 455555553
No 486
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=21.85 E-value=6.7e+02 Score=25.83 Aligned_cols=42 Identities=17% Similarity=0.289 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 023690 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (278)
Q Consensus 88 ~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~LmqSLq~d 129 (278)
..+..||.+|.+.|...++.|..-|+.-+.+++-+..-|.+-
T Consensus 636 ~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i 677 (692)
T 2xcs_B 636 GLERDKIEAEYNELLNYISELETILADEEVLLQLVRDELTEI 677 (692)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456789999999999999999999988777777776666543
No 487
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.63 E-value=4.4e+02 Score=26.19 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=11.3
Q ss_pred HHHHHHHHHhhcccccC
Q 023690 115 LEVFRKTLVQSLKDDED 131 (278)
Q Consensus 115 LE~FKk~LmqSLq~d~~ 131 (278)
-|+.-|+|-|=...|-.
T Consensus 179 Ye~~QKqLeQv~a~dL~ 195 (491)
T 1m1j_A 179 YDNIQKHLTQASSIDMH 195 (491)
T ss_dssp THHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHhhccccC
Confidence 57777888776555544
No 488
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=21.56 E-value=4.3e+02 Score=24.27 Aligned_cols=66 Identities=17% Similarity=0.144 Sum_probs=39.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 023690 43 TRVSDLESEHSALRSQLAEKDSRIAELQ---SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~LaEKd~~i~~Lq---~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDv 112 (278)
.+..+|+.|+..|++++..+...+..|. ..++.+. ..+..|..-.++|...=..|.+.+..|.-+|
T Consensus 226 k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~~~~~~~l~----~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I 294 (346)
T 2nrj_A 226 DNLGKLEPLLAELRQTVDYKVTLNRVVGVAYSNINEMH----KALDDAINALTYMSTQWHDLDSQYSGVLGHI 294 (346)
T ss_dssp GGHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677899999999999987666655543 2333333 3444555555555555555555544433333
No 489
>2yfa_A MCPS, methyl-accepting chemotaxis transducer; receptor, chemoreceptor; 1.80A {Pseudomonas putida} PDB: 2yfb_A
Probab=21.45 E-value=3.4e+02 Score=22.26 Aligned_cols=69 Identities=13% Similarity=0.220 Sum_probs=32.0
Q ss_pred HhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 023690 43 TRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (278)
Q Consensus 43 tRVs~LE~E~~~LR~~La-EKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE 116 (278)
..+..++..+..|+..|. +- ..+.++..-+......+ ..+..+.++..++. ..|.....++...+..|.
T Consensus 178 ~~~~~~~~~l~~L~~~l~~~~-~~l~~~~~~l~~Y~~~~-~~~~~a~~~~~~~~---~~m~~~g~~l~~~~~~l~ 247 (258)
T 2yfa_A 178 RQLDAALADTDNLKRQLPSED-ARLQQFENAVLAYRDAV-RQFRDAVANITTSR---AEMTVQGADIVKRSDALY 247 (258)
T ss_dssp HHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCchH-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 344444555555555543 22 34444444444333333 23334444444433 345555666666665553
No 490
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=21.45 E-value=2.3e+02 Score=22.67 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 023690 94 LSKENEALTNTVRKLQR 110 (278)
Q Consensus 94 L~~E~~~La~TvKkL~r 110 (278)
|.++...|......|..
T Consensus 107 l~~~i~~L~~~~~~L~~ 123 (148)
T 3gpv_A 107 VLQLIQDTEKNLKKIQQ 123 (148)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333333333333
No 491
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=21.40 E-value=3.1e+02 Score=21.73 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 023690 77 YSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (278)
Q Consensus 77 e~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKL 115 (278)
+.+|+++.++.-+.+.+|..|+=.|...|++-..||.-|
T Consensus 44 ~~~L~e~~keLh~~I~~LEeEKYDlE~kv~kq~yEI~eL 82 (106)
T 1j1d_B 44 EDQLREKAKELWQTIYNLEAEKFDLQEKFKQQKYEINVL 82 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhHHHHHH
Confidence 345667777777788888899988888888877777666
No 492
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=21.39 E-value=13 Score=34.78 Aligned_cols=51 Identities=24% Similarity=0.369 Sum_probs=0.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL 94 (278)
Q Consensus 44 RVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL 94 (278)
+|.++|.++..|++++.|--..-.+++.++..+|..+..+|.....+...|
T Consensus 334 ~~~~~~~~~~e~~kklee~~~~r~e~~~~~~~~e~~~~~~~~~~~~~~~~~ 384 (386)
T 2bnx_A 334 KVEKSEAKATELEKKLDSELTARHELQVEMKKMENDFEQKLQDLQGEKDAL 384 (386)
T ss_dssp HHHHHHTTTCC----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 493
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=21.32 E-value=6.2e+02 Score=25.21 Aligned_cols=74 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL-TNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L-a~TvKkL~rDvaKLE~FKk~L 122 (278)
++++..-...|+.=....+++++.+...-++++++=..+..||+.+.+.|... +.-=.+|.+--..|+.+++.+
T Consensus 8 q~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~ 82 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDL 82 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=21.32 E-value=4e+02 Score=25.88 Aligned_cols=78 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 023690 49 ESEHSALRSQLA---EKDSRIAELQSQIESIYSSLS---DKLGQ-----AQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (278)
Q Consensus 49 E~E~~~LR~~La---EKd~~i~~Lq~r~s~le~~l~---~rL~~-----a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~ 117 (278)
+.|+.++.+++. +.|+...++.+..+.||.-+- .+|.. ..++..++.+.-+.+..-+. +.|...++.
T Consensus 509 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~--~~~~~~~~~ 586 (605)
T 2kho_A 509 EDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALK--GEDKAAIEA 586 (605)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT--SSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHh--cCCHHHHHH
Q ss_pred HHHHHHhhccc
Q 023690 118 FRKTLVQSLKD 128 (278)
Q Consensus 118 FKk~LmqSLq~ 128 (278)
-.+.|-+-++.
T Consensus 587 ~~~~l~~~~~~ 597 (605)
T 2kho_A 587 KMQELAQVSQK 597 (605)
T ss_dssp HHHHHHTTCHH
T ss_pred HHHHHHHHHHH
No 495
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.25 E-value=2.5e+02 Score=20.67 Aligned_cols=84 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 023690 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ---IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (278)
Q Consensus 34 rkIts~A~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r---~s~le~~l~~rL~~a~ee~~kL~~E~~~La~TvKkL~r 110 (278)
++++--++..-+..|......|...|.+=+..+..|+.- --..-.+++....+-.+...+|..-...+...|..-..
T Consensus 9 i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l~~a~~ 88 (103)
T 4i0x_B 9 FSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAARTAHG 88 (103)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHH
Q 023690 111 DVSKLEV 117 (278)
Q Consensus 111 DvaKLE~ 117 (278)
....-|.
T Consensus 89 ~y~~~e~ 95 (103)
T 4i0x_B 89 AYSEAQE 95 (103)
T ss_dssp CC-----
T ss_pred HHHHHHH
No 496
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.23 E-value=4.3e+02 Score=23.51 Aligned_cols=53 Identities=15% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (278)
Q Consensus 41 ~atRVs~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E 97 (278)
++.|...+-++...|.++|.+=..++..++.++...-.++. ++++.-.++.=|
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~----~~~~~~~~~~~~ 221 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLA----QLREQYDKHLLE 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhhee
No 497
>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}
Probab=21.18 E-value=5.8e+02 Score=24.88 Aligned_cols=77 Identities=19% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 31 DVARKITSIAISTRVSDLESEHSALRS-QLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (278)
Q Consensus 31 dlarkIts~A~atRVs~LE~E~~~LR~-~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvK 106 (278)
++.||.+-+-+.-=+--|-+|+.+|+. +.-+....+..+...+..++..|. ..|........==.+|+..|...|.
T Consensus 51 e~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~g~~~~r~~~~~~lt~~vq 130 (526)
T 2de0_X 51 EILRRRIENGAKELWFFLQSELKKLKNLEGNELQRHADEFLLDLGHHERSIMTDLYYLSQTDGAGDWREKEAKDLTELVQ 130 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Q ss_pred H
Q 023690 107 K 107 (278)
Q Consensus 107 k 107 (278)
+
T Consensus 131 ~ 131 (526)
T 2de0_X 131 R 131 (526)
T ss_dssp H
T ss_pred H
No 498
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=21.15 E-value=2.1e+02 Score=21.19 Aligned_cols=39 Identities=21% Similarity=0.302 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 023690 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (278)
Q Consensus 59 LaEKd~~i~~Lq~r~s~le~~l~~rL~~a~ee~~kL~~E~~~L 101 (278)
|..--+.|..|+++...++.+.. ....++..|..+-..|
T Consensus 42 L~kA~~yI~~L~~~~~~l~~e~~----~L~~e~~~L~~~L~~l 80 (80)
T 1nlw_A 42 LTKAKLHIKKLEDSDRKAVHQID----QLQREQRHLKRQLEKL 80 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhC
No 499
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=21.02 E-value=4.4e+02 Score=24.87 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 023690 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERL-----SKENEALTNTVRKLQRDVSKLEVFRKTL 122 (278)
Q Consensus 49 E~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~-~rL~~a~ee~~kL-----~~E~~~La~TvKkL~rDvaKLE~FKk~L 122 (278)
+.|...||..|.==+..|.-| |+=..|.+|. ++++.+..-.... ......|.+.+|++.|-|.||...=.+.
T Consensus 237 ~~ELeSlK~EL~HfE~rL~Kl--rH~~~El~l~~~k~k~~e~~g~~~~~~~~~~k~~~leek~Kk~~rKV~Kl~~~Le~r 314 (323)
T 2p01_A 237 DKELEAFREELKHFEAKIEKH--NHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLSGR 314 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 023690 123 V 123 (278)
Q Consensus 123 m 123 (278)
+
T Consensus 315 I 315 (323)
T 2p01_A 315 I 315 (323)
T ss_dssp H
T ss_pred H
No 500
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=20.96 E-value=3.8e+02 Score=25.28 Aligned_cols=82 Identities=13% Similarity=0.154 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 023690 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (278)
Q Consensus 47 ~LE~E~~~LR~~LaEKd~~i~~Lq~r~s~le~~l~---~rL~~a~ee~~kL~~E~~~La~TvKkL~rDvaKLE~FKk~Lm 123 (278)
.++.++.++.+.+.+.-..+...++++...-.++. .++..+..+..--.++.+-+...+.|....+.+.+.==+..+
T Consensus 133 ~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v 212 (486)
T 3haj_A 133 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSL 212 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhccc
Q 023690 124 QSLKD 128 (278)
Q Consensus 124 qSLq~ 128 (278)
+.++.
T Consensus 213 ~~~n~ 217 (486)
T 3haj_A 213 KELDQ 217 (486)
T ss_dssp HHHHT
T ss_pred HHHHH
Done!