BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023691
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/183 (39%), Positives = 102/183 (55%), Gaps = 11/183 (6%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N+SKNRY DI P+D RV+LK +DY A YIN + SS ++Q+IA QGPLPHT
Sbjct: 71 NISKNRYRDISPYDATRVILKGNEDYINA--NYINMEI---PSSSIINQYIACQGPLPHT 125
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA 205
DFW+M + ++VMLT V+ + VKC Y+ G +G VT + TA
Sbjct: 126 CTDFWQMTWEQGSSMVVMLTTQVERGR-VKCHQYWPEPTGSSSYGCYQ-VTCHSEEGNTA 183
Query: 206 LVLRNLEV-NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYN-LPPNFGPIV 263
+ R + + N +++E P++ IQY WPDHGVP D+ + + + N P+V
Sbjct: 184 YIFRKMTLFNQEKNESRPLT--QIQYIAWPDHGVPDDSSDFLDFVCHVRNKRAGKEEPVV 241
Query: 264 VHC 266
VHC
Sbjct: 242 VHC 244
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 19/227 (8%)
Query: 53 KSREISQEFARLQAS----------RIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNR 102
K + F +LQA +K + C +AL N KNRY +ILP+D R
Sbjct: 24 KINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATR 83
Query: 103 VVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIV 162
V L D YINAS I ++ + ++I TQGPLP T +DFW+MV + + IV
Sbjct: 84 VKLSNVDD--DPCSDYINASYIPGNNFRR--EYIVTQGPLPGTKDDFWKMVWEQNVHNIV 139
Query: 163 MLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPP 222
M+T+ V+ + VKC Y+ A+ +G++ I+ ++ +R ++ +E +
Sbjct: 140 MVTQCVEKGR-VKCDHYWPADQDSLYYGDL-ILQMLSESVLPEWTIREFKICGEEQLDAH 197
Query: 223 MSVLHIQYPEWPDHGVPRDTLAVREILKRI---YNLPPNFGPIVVHC 266
+ H Y WPDHGVP T ++ + ++ + N P GP VVHC
Sbjct: 198 RLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHC 244
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 110 bits (275), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 15/222 (6%)
Query: 49 KLQNKSREI-SQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQ 107
KLQ S + S+E+ L K + C +AL N KNRY +ILP+D RV L
Sbjct: 18 KLQADSNYLLSKEYEEL-----KDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLSN 72
Query: 108 CKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRL 167
D YINAS I ++ + ++I TQGPLP T +DFW+MV + + IVM+T+
Sbjct: 73 VDD--DPCSDYINASYIPGNNFRR--EYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQC 128
Query: 168 VDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLH 227
V+ + VKC Y+ A+ +G++ I+ ++ +R ++ +E + + H
Sbjct: 129 VEKGR-VKCDHYWPADQDSLYYGDL-ILQMLSESVLPEWTIREFKICGEEQLDAHRLIRH 186
Query: 228 IQYPEWPDHGVPRDTLAVREILKRI---YNLPPNFGPIVVHC 266
Y WPDHGVP T ++ + ++ + N P GP VVHC
Sbjct: 187 FHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHC 228
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 113/227 (49%), Gaps = 24/227 (10%)
Query: 53 KSREISQEFARLQAS----------RIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNR 102
K + F +LQA +K + C +AL N KNRY +ILP+D R
Sbjct: 10 KINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATR 69
Query: 103 VVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIV 162
V L DY INAS I ++ + ++I TQGPLP T +DFW+MV + + IV
Sbjct: 70 VKLSGGSDY-------INASYIPGNNFRR--EYIVTQGPLPGTKDDFWKMVWEQNVHNIV 120
Query: 163 MLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPP 222
M+T+ V+ + VKC Y+ A+ +G++ I+ ++ +R ++ +E +
Sbjct: 121 MVTQCVEKGR-VKCDHYWPADQDSLYYGDL-ILQMLSESVLPEWTIREFKICGEEQLDAH 178
Query: 223 MSVLHIQYPEWPDHGVPRDTLAVREILKRI---YNLPPNFGPIVVHC 266
+ H Y WPDHGVP T ++ + ++ + N P GP VVHC
Sbjct: 179 RLIRHFHYTVWPDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHC 225
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 97/183 (53%), Gaps = 12/183 (6%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTS--SSEKVSQFIATQGPLP 143
NL KNRY D+LP+D RV+L+ +DY INAS ++ ++ V+++IATQGPLP
Sbjct: 44 NLDKNRYKDVLPYDTTRVLLQGNEDY-------INASYVNMEIPAANLVNKYIATQGPLP 96
Query: 144 HTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTE 203
HT FW++V +IVMLT L + + KC Y+ G I + T
Sbjct: 97 HTCAQFWQVVWDQKLSLIVMLTTLTERGR-TKCHQYWPDPPDVMNHGGFHIQCQSEDCTI 155
Query: 204 TALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIV 263
+ L N + EE +V H+QY WPDHGVP D+ E + + +L + P++
Sbjct: 156 AYVSREMLVTNTQTGEE--HTVTHLQYVAWPDHGVPDDSSDFLEFVNYVRSLRVDSEPVL 213
Query: 264 VHC 266
VHC
Sbjct: 214 VHC 216
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 69/186 (37%), Positives = 102/186 (54%), Gaps = 14/186 (7%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
+N KNRYT+ILP+D +RV L + YINA+ I +S + ++IATQGPLP
Sbjct: 57 MNRCKNRYTNILPYDFSRVRLVSMNE--EEGSDYINANYIPGYNSPQ--EYIATQGPLPE 112
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T DFW+MV+Q +IVMLT+ + + VKC Y+ + P +G+I V + T
Sbjct: 113 TRNDFWKMVLQQKSQIIVMLTQ-CNEKRRVKCDHYWPFTEDPIAYGDI-TVEMLSEEEHT 170
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP----PNFG 260
V RN ++Y + + V+H Y WPDHGVP A IL+ + + + G
Sbjct: 171 DWVYRNFRISYADEVQ---DVMHFNYTAWPDHGVPTAN-AAESILQFVQMVRQKSVKSKG 226
Query: 261 PIVVHC 266
P+++HC
Sbjct: 227 PMIIHC 232
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 108 bits (270), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 115/233 (49%), Gaps = 17/233 (7%)
Query: 38 HCSEALSFFKEKLQNKSREISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
H L +K K+ ++ R EF + K P + AR N +KNRY DIL
Sbjct: 11 HADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEAR------KPFNQNKNRYVDIL 64
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D NRV L + A YINAS I + ++IA QGP T +DFW + +
Sbjct: 65 PYDYNRVELSEING--DAGSNYINASYIDGFKEPR--KYIAAQGPRDETVDDFWRXIWEQ 120
Query: 157 HCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNY 215
VIV +TR + + KC +Y+ E+G R FG++ + K +++ L +
Sbjct: 121 KATVIVXVTRCEEGNRN-KCAEYWPSXEEGTRAFGDVVVKINQHKRC-PDYIIQKLNIVN 178
Query: 216 KESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNF--GPIVVHC 266
K+ + V HIQ+ WPDHGVP D + ++ +R+ N NF GPIVVH
Sbjct: 179 KKEKATGREVTHIQFTSWPDHGVPEDPHLLLKLRRRV-NAFSNFFSGPIVVHS 230
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 57 ISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAAR 116
+ EF RL + R R + N SKNR ++++P+D NRV LK + +
Sbjct: 321 LEAEFQRLPSYR-----SWRTQHIGNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESE 375
Query: 117 -----------------GYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCP 159
YINAS I + +V IA QGPL T DFW+ + Q
Sbjct: 376 HDSDESSDDDSDSEEPSKYINASFIXSYWKPEVX--IAAQGPLKETIGDFWQXIFQRKVK 433
Query: 160 VIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESE 219
VIV LT L + + C Y+ +G + +G+I + K + T LR E+ + + +
Sbjct: 434 VIVXLTELKHGDQEI-CAQYWG--EGKQTYGDIEVDLKDTDKSST-YTLRVFELRHSKRK 489
Query: 220 EPPMSVLHIQYPEWPDHGV---PRDTLAVREILKRIYNLPPNFG----------PIVVHC 266
+ +V QY W + P++ ++ +++K+ LP P+++HC
Sbjct: 490 D-SRTVYQYQYTNWSVEQLPAEPKELISXIQVVKQ--KLPQKNSSEGNKHHKSTPLLIHC 546
Query: 267 R 267
R
Sbjct: 547 R 547
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 114/234 (48%), Gaps = 21/234 (8%)
Query: 42 ALSFFKEKLQNKSRE---ISQEFARLQASRIKPSEMARGCTVALDGV---NLSKNRYTDI 95
A SF + RE ++ EF+ +QA + A G + G N+ KNRY D+
Sbjct: 12 ARSFLERLEARGGREGAVLAGEFSDIQAC--SAAWKADGVCSTVAGSRPENVRKNRYKDV 69
Query: 96 LPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQ 155
LP+D+ RV+L ++ YIN + I +IATQGPLPHT DFW +V +
Sbjct: 70 LPYDQTRVILSLLQE--EGHSDYINGNFIRGVDGSLA--YIATQGPLPHTLLDFWRLVWE 125
Query: 156 YHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNY 215
+ VI+M R ++N + +C Y+ E P + G I K ++LR L+V +
Sbjct: 126 FGVKVILMACREIENGRK-RCERYWAQEQEPLQTGLFCITLIKEKWLNEDIMLRTLKVTF 184
Query: 216 KESEEPPMSVLHIQYPEWPDHGVPRD---TLAVREILKRIYNLPPNFGPIVVHC 266
++ SV +QY WPD GVP LA+ E +R+ P P+ VHC
Sbjct: 185 QKESR---SVYQLQYMSWPDRGVPSSPDHMLAMVEEARRLQGSGPE--PLCVHC 233
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 103/186 (55%), Gaps = 14/186 (7%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
+N KNRYT+ILP+D +RV L + A YINA+ I +S + ++IATQGPLP
Sbjct: 48 LNRCKNRYTNILPYDFSRVRLVSMNEEEGA--DYINANYIPGYNSPQ--EYIATQGPLPE 103
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T DFW+MV+Q +IVMLT+ + + VKC Y+ + P +G+I V + +
Sbjct: 104 TRNDFWKMVLQQKSQIIVMLTQ-CNEKRRVKCDHYWPFTEEPIAYGDI-TVEMISEEEQD 161
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFG 260
R+ +NY + + V+H Y WPDHGVP A IL+ ++ + + G
Sbjct: 162 DWACRHFRINYADEMQ---DVMHFNYTAWPDHGVPTAN-AAESILQFVHMVRQQATKSKG 217
Query: 261 PIVVHC 266
P+++HC
Sbjct: 218 PMIIHC 223
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 107 bits (268), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/186 (36%), Positives = 103/186 (55%), Gaps = 14/186 (7%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
+N KNRYT+ILP+D +RV L + A YINA+ I +S + ++IATQGPLP
Sbjct: 50 LNRCKNRYTNILPYDFSRVRLVSMNEEEGA--DYINANYIPGYNSPQ--EYIATQGPLPE 105
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T DFW+MV+Q +IVMLT+ + + VKC Y+ + P +G+I V + +
Sbjct: 106 TRNDFWKMVLQQKSQIIVMLTQ-CNEKRRVKCDHYWPFTEEPIAYGDI-TVEMISEEEQD 163
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFG 260
R+ +NY + + V+H Y WPDHGVP A IL+ ++ + + G
Sbjct: 164 DWACRHFRINYADEMQ---DVMHFNYTAWPDHGVPTAN-AAESILQFVHMVRQQATKSKG 219
Query: 261 PIVVHC 266
P+++HC
Sbjct: 220 PMIIHC 225
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 113/222 (50%), Gaps = 18/222 (8%)
Query: 48 EKLQ-NKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLK 106
E+L+ N S ++SQE+ I P + L+ N KNRY +++ +D +RV+L+
Sbjct: 24 ERLKANDSLKLSQEY-----ESIDPGQQFTWEHSNLEA-NKPKNRYANVIAYDHSRVILQ 77
Query: 107 QCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTR 166
+ YINA+ + + + +IATQGPLP T+ DFW MV + +VM+TR
Sbjct: 78 PLEGI--MGSDYINANYVD--GYRRQNAYIATQGPLPETFGDFWRMVWEQRSATVVMMTR 133
Query: 167 LVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA-LVLRNLEVNYKESEEPPMSV 225
L + + +KC Y+ G +G I + + T E A +R ++ S E V
Sbjct: 134 LEEKSR-IKCDQYW-PNRGTETYGFIQVTL--LDTMELATFCVRTFSLHKNGSSE-KREV 188
Query: 226 LHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIVVHC 266
H Q+ WPDHGVP L+R+ PP+ GPIVVHC
Sbjct: 189 RHFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDAGPIVVHC 230
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 15/210 (7%)
Query: 60 EFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYI 119
EF RL +S+ + +R T +L N KNR +ILP++ +RV L+ + YI
Sbjct: 324 EFKRLASSK---AHTSRFITASLP-CNKFKNRLVNILPYESSRVCLQPIRGVE--GSDYI 377
Query: 120 NASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDY 179
NAS I +K +IATQGPL T EDFW + + + ++VMLT+L + + KC Y
Sbjct: 378 NASFIDGYRQQKA--YIATQGPLAETTEDFWRALWENNSTIVVMLTKLREMGRE-KCHQY 434
Query: 180 FQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP 239
+ AE R +V + +LR +V + +V Q+ +WP+ G P
Sbjct: 435 WPAERSARY--QYFVVDPMAEYNMPQYILREFKVT-DARDGQSRTVRQFQFTDWPEQGAP 491
Query: 240 RDTLAVREILKRIYNLPPNF---GPIVVHC 266
+ + + +++ F GPI VHC
Sbjct: 492 KSGEGFIDFIGQVHKTKEQFGQDGPISVHC 521
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 117/253 (46%), Gaps = 25/253 (9%)
Query: 21 SAVDFPPRI-SLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCT 79
+A D R+ L Q + + F++E + +E+ RL+ R +
Sbjct: 219 NAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPE--------- 269
Query: 80 VALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLIST---SSSEKVSQFI 136
N KNRY +ILPFD +RV+L Q +D YINA+ I E +I
Sbjct: 270 ------NKGKNRYKNILPFDHSRVIL-QGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 322
Query: 137 ATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVT 196
A+QG L T DFW+M Q + VIVM TR V+ + KC Y+ R +G VT
Sbjct: 323 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRN-KCVPYWPEVGMQRAYGPYS-VT 380
Query: 197 KWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
+ T LR L+V+ ++ + + H QY WPDHGVP + V L +I
Sbjct: 381 NCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQ 440
Query: 257 ---PNFGPIVVHC 266
P+ GPI+VHC
Sbjct: 441 ESLPHAGPIIVHC 453
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 105 bits (261), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 113/222 (50%), Gaps = 18/222 (8%)
Query: 48 EKLQ-NKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLK 106
E+L+ N S ++SQE+ I P + L+ VN KNRY +++ +D +RV+L+
Sbjct: 22 ERLKANDSLKLSQEY-----ESIDPGQQFTWEHSNLE-VNKPKNRYANVIAYDHSRVILQ 75
Query: 107 QCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTR 166
+ YINA+ + + + +IATQGPLP T+ DFW MV + IVM+TR
Sbjct: 76 PIEGI--MGSDYINANYVD--GYRRQNAYIATQGPLPETFGDFWRMVWEQRSATIVMMTR 131
Query: 167 LVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA-LVLRNLEVNYKESEEPPMSV 225
L + + +KC Y+ G +G I + + T E A +R ++ S E V
Sbjct: 132 LEEKSR-IKCDQYW-PNRGTETYGFIQVTL--LDTIELATFCVRTFSLHKNGSSE-KREV 186
Query: 226 LHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIVVHC 266
Q+ WPDHGVP L+R+ PP+ GPIVVHC
Sbjct: 187 RQFQFTAWPDHGVPEYPTPFLAFLRRVKTCNPPDAGPIVVHC 228
Score = 89.7 bits (221), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 101/210 (48%), Gaps = 15/210 (7%)
Query: 60 EFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYI 119
EF RL S+ + +R + L N KNR +I+P++ RV L+ + YI
Sbjct: 322 EFKRLANSK---AHTSRFISANLP-CNKFKNRLVNIMPYESTRVCLQPIRGVE--GSDYI 375
Query: 120 NASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDY 179
NAS I +K +IATQGPL T EDFW M+ + + ++VMLT+L + + KC Y
Sbjct: 376 NASFIDGYRQQKA--YIATQGPLAETTEDFWRMLWENNSTIVVMLTKLREMGRE-KCHQY 432
Query: 180 FQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP 239
+ AE R +V + +LR +V + +V Q+ +WP+ GVP
Sbjct: 433 WPAERSARY--QYFVVDPMAEYNMPQYILREFKVT-DARDGQSRTVRQFQFTDWPEQGVP 489
Query: 240 RDTLAVREILKRIYNLPPNF---GPIVVHC 266
+ + + +++ F GPI VHC
Sbjct: 490 KSGEGFIDFIGQVHKTKEQFGQDGPISVHC 519
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLIST---SSSEKVSQFIATQGPL 142
N KNRY +ILPFD +RV+L Q +D YINA+ I E +IA+QG L
Sbjct: 50 NKGKNRYKNILPFDHSRVIL-QGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCL 108
Query: 143 PHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTT 202
T DFW+M Q + VIVM TR V+ + KC Y+ R +G VT +
Sbjct: 109 EATVNDFWQMAWQENSRVIVMTTREVEKGRN-KCVPYWPEVGMQRAYGPYS-VTNCGEHD 166
Query: 203 ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP---PNF 259
T LR L+V+ ++ + + H QY WPDHGVP + V L +I P+
Sbjct: 167 TTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHA 226
Query: 260 GPIVVHC 266
GPI+VHC
Sbjct: 227 GPIIVHC 233
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 95/187 (50%), Gaps = 9/187 (4%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLIST---SSSEKVSQFIATQGPL 142
N KNRY +ILPFD +RV+L Q +D YINA+ I E +IA+QG L
Sbjct: 28 NKGKNRYKNILPFDHSRVIL-QGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCL 86
Query: 143 PHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTT 202
T DFW+M Q + VIVM TR V+ + KC Y+ R +G VT +
Sbjct: 87 EATVNDFWQMAWQENSRVIVMTTREVEKGRN-KCVPYWPEVGMQRAYGPYS-VTNCGEHD 144
Query: 203 ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP---PNF 259
T LR L+V+ ++ + + H QY WPDHGVP + V L +I P+
Sbjct: 145 TTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHA 204
Query: 260 GPIVVHC 266
GPI+VHC
Sbjct: 205 GPIIVHC 211
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 104 bits (259), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 104 bits (259), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ VKC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEK-GSVKCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 214 GSLSPEHGPVVVHC 227
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor
Phosphatase Gamma
Length = 320
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 67 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 124
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 125 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTEN-SEEYGNIIVTLKSTKIHACY 182
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 183 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 242
Query: 257 -PNFGPIVVHC 266
P GP++VHC
Sbjct: 243 MPETGPVLVHC 253
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 56 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 113
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 114 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTEN-SEEYGNIIVTLKSTKIHACY 171
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 172 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 231
Query: 257 -PNFGPIVVHC 266
P GP++VHC
Sbjct: 232 MPETGPVLVHC 242
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Trigonal Crystal Form
Length = 310
Score = 103 bits (257), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 56 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 113
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 114 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTEN-TEEYGNIIVTLKSTKIHACY 171
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 172 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 231
Query: 257 -PNFGPIVVHC 266
P GP++VHC
Sbjct: 232 MPETGPVLVHC 242
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 57 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 114
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 115 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTENS-EEYGNIIVTLKSTKIHACY 172
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 173 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 232
Query: 257 -PNFGPIVVHC 266
P GP++VHC
Sbjct: 233 MPETGPVLVHC 243
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 38 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 89
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 90 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 148
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 149 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 207
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 208 GSLSPEHGPVVVHC 221
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 31 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 82
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 83 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 141
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 142 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 200
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 201 GSLSPEHGPVVVHC 214
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 34 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 85
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 86 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 144
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 145 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 203
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 204 GSLSPEHGPVVVHC 217
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene
Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 49 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 106
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +IVM+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 107 FEDFWRMIWEQNTGIIVMITNLVEKGRR-KCDQYWPTENS-EEYGNIIVTLKSTKIHACY 164
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 165 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 224
Query: 257 -PNFGPIVVHC 266
P GP++VHC
Sbjct: 225 MPETGPVLVHC 235
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 94/201 (46%), Gaps = 24/201 (11%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARG--YINASLISTSSSEKVSQF 135
C A N KNR + ++P ++ RV L P +G YINAS I + ++F
Sbjct: 342 CFSAQKECNKEKNRNSSVVPSERARVGLAPL----PGMKGTDYINASYIM--GYYRSNEF 395
Query: 136 IATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-----QAEDGPREFG 190
I TQ PLPHT +DFW M+ ++ +IVML DN + + D F + E E
Sbjct: 396 IITQHPLPHTTKDFWRMIWDHNAQIIVMLP---DNQSLAE--DEFVYWPSREESMNCEAF 450
Query: 191 NIGIVTK--WIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP-RDTLAVRE 247
+ +++K + E +++ + + + ++ + V H Q P+WP+ P T +
Sbjct: 451 TVTLISKDRLCLSNEEQIIIHDFILEATQ-DDYVLEVRHFQCPKWPNPDAPISSTFELIN 509
Query: 248 ILKRIYNLPPNFGPIVVHCRY 268
++K GP +VH Y
Sbjct: 510 VIKE--EALTRDGPTIVHDEY 528
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 38 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 89
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 90 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 148
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 149 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 207
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 208 GSLSPEHGPVVVHC 221
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine
Phosphatase 1b Using A Second Phosphotyrosine Binding
Site, Complexed With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b,
Compound 8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b
Targeting The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase
1b Inhibitor Using A Linked Fragment Strategy And A
Malonate Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Compound Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog
Fo Second Catalytic Step
Length = 321
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 66 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 117
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 118 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 176
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 177 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 235
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 236 GSLSPEHGPVVVHC 249
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 214 GSLSPEHGPVVVHC 227
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 36 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 87
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 88 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 146
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 147 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 205
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 206 GSLSPEHGPVVVHC 219
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 56 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 113
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW M+ + + +I+M+T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 114 FEDFWRMIWEQNTGIIIMITNLVEKGRR-KCDQYWPTEN-TEEYGNIIVTLKSTKIHACY 171
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 172 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVLTFVRRSSAAR 231
Query: 257 -PNFGPIVVHC 266
P GP++VHC
Sbjct: 232 MPETGPVLVHC 242
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity
Of Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY ++ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYVNVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
(R47v, D48n) Complexed With
2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY ++ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYVNVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLI------STSSSEKVSQFIATQ 139
N +KNRY +ILPFD RVVL P + YINA++I ++S+ +IATQ
Sbjct: 273 NKNKNRYKNILPFDHTRVVLHDGDPNEPVS-DYINANIIMPEFETKCNNSKPKKSYIATQ 331
Query: 140 GPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWI 199
G L +T DFW MV Q + VIVM T+ V+ K KC Y+ E +E+G V +
Sbjct: 332 GCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKS-KCVKYWPDEYALKEYG----VMRVR 386
Query: 200 KTTETA---LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
E+A LR L+++ +V + WPDHGVP D V + L+ +++
Sbjct: 387 NVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQ 446
Query: 257 PNF---GPIVVHC 266
+ GP+VVHC
Sbjct: 447 ESIMDAGPVVVHC 459
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 39 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 90
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 91 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 149
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 150 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 208
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 209 GSLSPEHGPVVVHC 222
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic
Bisphosphonate Inhibitor
Length = 295
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 214 GSLSPEHGPVVVHC 227
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein
Tyrosine Phosphatase Shp-1
Length = 595
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 116/253 (45%), Gaps = 25/253 (9%)
Query: 21 SAVDFPPRI-SLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCT 79
+A D R+ L Q + + F++E + +E+ RL+ R +
Sbjct: 219 NAADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPE--------- 269
Query: 80 VALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLIST---SSSEKVSQFI 136
N KNRY +ILPFD +RV+L Q +D YINA+ I E +I
Sbjct: 270 ------NKGKNRYKNILPFDHSRVIL-QGRDSNIPGSDYINANYIKNQLLGPDENAKTYI 322
Query: 137 ATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVT 196
A+QG L T DFW+M Q + VIVM TR V+ + KC Y+ R +G VT
Sbjct: 323 ASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRN-KCVPYWPEVGMQRAYGPYS-VT 380
Query: 197 KWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
+ T LR L+V+ ++ + + H QY WPDHGVP + V L +I
Sbjct: 381 NCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQ 440
Query: 257 ---PNFGPIVVHC 266
P+ GPI+VH
Sbjct: 441 ESLPHAGPIIVHS 453
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLI------STSSSEKVSQFIATQ 139
N +KNRY +ILPFD RVVL P + YINA++I ++S+ +IATQ
Sbjct: 60 NKNKNRYKNILPFDHTRVVLHDGDPNEPVS-DYINANIIMPEFETKCNNSKPKKSYIATQ 118
Query: 140 GPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWI 199
G L +T DFW MV Q + VIVM T+ V+ K KC Y+ E +E+G V +
Sbjct: 119 GCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKS-KCVKYWPDEYALKEYG----VMRVR 173
Query: 200 KTTETA---LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
E+A LR L+++ +V + WPDHGVP D V + L+ +++
Sbjct: 174 NVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQ 233
Query: 257 PNF---GPIVVHC 266
+ GP+VVHC
Sbjct: 234 ESIMDAGPVVVHC 246
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase
Shp2 Complexed With A Salicylic Acid-Based Small
Molecule Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 100/193 (51%), Gaps = 18/193 (9%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLI------STSSSEKVSQFIATQ 139
N +KNRY +ILPFD RVVL P + YINA++I ++S+ +IATQ
Sbjct: 13 NKNKNRYKNILPFDHTRVVLHDGDPNEPVS-DYINANIIMPEFETKCNNSKPKKSYIATQ 71
Query: 140 GPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWI 199
G L +T DFW MV Q + VIVM T+ V+ K KC Y+ E +E+G V +
Sbjct: 72 GCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKS-KCVKYWPDEYALKEYG----VMRVR 126
Query: 200 KTTETA---LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP 256
E+A LR L+++ +V + WPDHGVP D V + L+ +++
Sbjct: 127 NVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDFLEEVHHKQ 186
Query: 257 PNF---GPIVVHC 266
+ GP+VVHC
Sbjct: 187 ESIMDAGPVVVHC 199
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 33/234 (14%)
Query: 44 SFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRV 103
++FK++ + + ++E+ L+ I + A A N KNRY ++LP+D +RV
Sbjct: 33 AYFKKQQADSNCGFAEEYEDLKLIGISLPKYA-----AEIAENRGKNRYNNVLPYDISRV 87
Query: 104 VLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVM 163
L + YINA+ + S+K FIATQGPLP+T +DFW MV + + IVM
Sbjct: 88 KLSVQTH---STDDYINANYMPGYHSKK--DFIATQGPLPNTLKDFWRMVWEKNVYAIVM 142
Query: 164 LTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL---VLRNLEV-NYKESE 219
LT+ V+ + KC +Y+ ++ +++G+I + T+E L +R+ V N + SE
Sbjct: 143 LTKCVEQGR-TKCEEYWPSKQA-QDYGDITVAM----TSEVVLPEWTIRDFVVKNMQSSE 196
Query: 220 EPPMSVLHIQYPEWPDHGVPRDT-------LAVREILKRIYNLPPNFGPIVVHC 266
P+ H + WPDHGVP T VR+ +K+I PP PI+VHC
Sbjct: 197 SHPLRQFH--FTSWPDHGVPDTTDLLINFRYLVRDYMKQI---PPE-SPILVHC 244
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 20/188 (10%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N ++NRY D+ P+D +RV L+ A YINASL+ +++ +I TQGPLP+T
Sbjct: 42 NRNRNRYRDVSPYDHSRVKLQN------AENDYINASLVDIEEAQR--SYILTQGPLPNT 93
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKW----IKT 201
FW MV Q +VML R+V+ + VKC Y+ +D F G K +K+
Sbjct: 94 CCHFWLMVWQQKTKAVVMLNRIVEK-ESVKCAQYWPTDDQEMLFKETGFSVKLLSEDVKS 152
Query: 202 TETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY---NLPPN 258
T +L+ +N E+ ++ H Y WPD GVP + L ++ +L P+
Sbjct: 153 YYTVHLLQLENINSGETR----TISHFHYTTWPDFGVPESPASFLNFLFKVRESGSLNPD 208
Query: 259 FGPIVVHC 266
GP V+HC
Sbjct: 209 HGPAVIHC 216
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With
Sp7343-Sp7964, A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 97/186 (52%), Gaps = 15/186 (8%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N ++NRY D+ PFD +R+ L Q YINASLI +++ +I TQGPLP+T
Sbjct: 40 NKNRNRYCDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYILTQGPLPNT 91
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVTKWI-KTTE 203
FWEMV + +VML R+++ + KC Y+ Q E+ F + + I + +
Sbjct: 92 VGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKLTLISEDIK 150
Query: 204 TALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY---NLPPNFG 260
+ +R LE+ ++E +LH Y WPD GVP + L ++ +L P G
Sbjct: 151 SYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRESGSLSPEHG 209
Query: 261 PIVVHC 266
P+VVHC
Sbjct: 210 PVVVHC 215
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 101 bits (251), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 94/186 (50%), Gaps = 9/186 (4%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLIST---SSSEKVSQFIATQGPL 142
N KNRY +ILPFD +RV+L Q +D YINA+ I E +IA+QG L
Sbjct: 30 NKGKNRYKNILPFDHSRVIL-QGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCL 88
Query: 143 PHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTT 202
T DFW+M Q + VIVM TR V+ + KC Y+ R +G VT +
Sbjct: 89 EATVNDFWQMAWQENSRVIVMTTREVEKGRN-KCVPYWPEVGMQRAYGPYS-VTNCGEHD 146
Query: 203 ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP---PNF 259
T LR L+V+ ++ + + H QY WPDHGVP + V L +I P+
Sbjct: 147 TTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHA 206
Query: 260 GPIVVH 265
GPI+VH
Sbjct: 207 GPIIVH 212
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/186 (37%), Positives = 94/186 (50%), Gaps = 9/186 (4%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLIST---SSSEKVSQFIATQGPL 142
N KNRY +ILPFD +RV+L Q +D YINA+ I E +IA+QG L
Sbjct: 28 NKGKNRYKNILPFDHSRVIL-QGRDSNIPGSDYINANYIKNQLLGPDENAKTYIASQGCL 86
Query: 143 PHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTT 202
T DFW+M Q + VIVM TR V+ + KC Y+ R +G VT +
Sbjct: 87 EATVNDFWQMAWQENSRVIVMTTREVEKGRN-KCVPYWPEVGMQRAYGPYS-VTNCGEHD 144
Query: 203 ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP---PNF 259
T LR L+V+ ++ + + H QY WPDHGVP + V L +I P+
Sbjct: 145 TTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSEPGGVLSFLDQINQRQESLPHA 204
Query: 260 GPIVVH 265
GPI+VH
Sbjct: 205 GPIIVH 210
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 100 bits (250), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVH 265
+L P GP+VVH
Sbjct: 202 GSLSPEHGPVVVH 214
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + +T +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKTYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVH 265
+L P GP+VVH
Sbjct: 202 GSLSPEHGPVVVH 214
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 92/183 (50%), Gaps = 9/183 (4%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
VN KNRY +++ +D +RV+L D P + YINA+ I K + +IATQGPLP
Sbjct: 42 VNKPKNRYANVIAYDHSRVILTSI-DGVPGS-DYINANYID--GYRKQNAYIATQGPLPE 97
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T DFW MV + +VM+TRL + + VKC Y+ A G G I + + T E
Sbjct: 98 TMGDFWRMVWEQRTATVVMMTRLEEKSR-VKCDQYWPAR-GTETCGLIQVTL--LDTVEL 153
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP-NFGPIV 263
A +K + Q+ WPDHGVP + L+R+ P + GP+V
Sbjct: 154 ATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFLRRVKACNPLDAGPMV 213
Query: 264 VHC 266
VHC
Sbjct: 214 VHC 216
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 92/184 (50%), Gaps = 11/184 (5%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNR +I+P++ RV L+ + + YINAS + +K +IATQGPL +
Sbjct: 332 NKFKNRLVNIMPYELTRVCLQPIRGVEGS--DYINASFLDGYRQQKA--YIATQGPLAES 387
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA 205
EDFW M+ +++ +IVMLT+L + + KC Y+ AE R +V +
Sbjct: 388 TEDFWRMLWEHNSTIIVMLTKLREMGRE-KCHQYWPAERSARY--QYFVVDPMAEYNMPQ 444
Query: 206 LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNF---GPI 262
+LR +V + ++ Q+ +WP+ GVP+ + + +++ F GPI
Sbjct: 445 YILREFKVT-DARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQVHKTKEQFGQDGPI 503
Query: 263 VVHC 266
VHC
Sbjct: 504 TVHC 507
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 61/183 (33%), Positives = 90/183 (49%), Gaps = 9/183 (4%)
Query: 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPH 144
VN KNRY +++ +D +RV+L + Y+NA+ I K + +IATQG LP
Sbjct: 51 VNKPKNRYANVIAYDHSRVLLSAIEGI--PGSDYVNANYID--GYRKQNAYIATQGSLPE 106
Query: 145 TYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTET 204
T+ DFW M+ + +VM+T+L + + VKC Y+ + G G + + + T E
Sbjct: 107 TFGDFWRMIWEQRSATVVMMTKLEERSR-VKCDQYWPSR-GTETHGLVQVTL--LDTVEL 162
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIV 263
A YK V Q+ WPDHGVP L+R+ PP+ GP+V
Sbjct: 163 ATYCVRTFALYKNGSSEKREVRQFQFTAWPDHGVPEHPTPFLAFLRRVKTCNPPDAGPMV 222
Query: 264 VHC 266
VHC
Sbjct: 223 VHC 225
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVH
Sbjct: 202 GSLSPEHGPVVVHA 215
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor
Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
Length = 298
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVH
Sbjct: 202 GSLSPEHGPVVVHA 215
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic
Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVH 265
+L P GP+VVH
Sbjct: 202 GSLSPEHGPVVVH 214
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVH 265
+L P GP+VVH
Sbjct: 202 GSLSPEHGPVVVH 214
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVH 265
+L P GP+VVH
Sbjct: 202 GSLSPEHGPVVVH 214
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVH 265
+L P GP+VVH
Sbjct: 202 GSLSPEHGPVVVH 214
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 38 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 89
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 90 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 148
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 149 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 207
Query: 254 -NLPPNFGPIVVH 265
+L P GP+VVH
Sbjct: 208 GSLSPEHGPVVVH 220
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVH 265
+L P GP+VVH
Sbjct: 214 GSLSPEHGPVVVH 226
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With
Open Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 15/194 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 32 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 83
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 84 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 142
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y +PD GVP + L ++
Sbjct: 143 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTFPDFGVPESPASFLNFLFKVRES 201
Query: 254 -NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 202 GSLSPEHGPVVVHC 215
>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
Phosphatase 1b
Length = 310
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 15/193 (7%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 44 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 95
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVT 196
TQGPLP+T FWEMV + +VML R+++ + KC Y+ Q E+ F + +
Sbjct: 96 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSL-KCAQYWPQKEEKEMIFEDTNLKL 154
Query: 197 KWI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY-- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 155 TLISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRES 213
Query: 254 -NLPPNFGPIVVH 265
+L P GP+VVH
Sbjct: 214 GSLSPEHGPVVVH 226
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 99.0 bits (245), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 97/193 (50%), Gaps = 13/193 (6%)
Query: 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIA 137
C VA N ++NRY D+ PFD +R+ L Q YINASLI +++ +I
Sbjct: 38 CRVAKLPKNKNRNRYRDVSPFDHSRIKLHQ------EDNDYINASLIKMEEAQR--SYIL 89
Query: 138 TQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTK 197
TQGPLP+T FWEMV + +VML R+++ + + Q E+ F + +
Sbjct: 90 TQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKWAQYWPQKEEKEMIFEDTNLKLT 149
Query: 198 WI-KTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIY--- 253
I + ++ +R LE+ ++E +LH Y WPD GVP + L ++
Sbjct: 150 LISEDIKSYYTVRQLELENLTTQE-TREILHFHYTTWPDFGVPESPASFLNFLFKVRESG 208
Query: 254 NLPPNFGPIVVHC 266
+L P GP+VVHC
Sbjct: 209 SLSPEHGPVVVHC 221
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 93/191 (48%), Gaps = 14/191 (7%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +IL +D +RV L+ YINA+ + K +IATQGPL T
Sbjct: 57 NKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVD--GYNKAKAYIATQGPLKST 114
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT---- 201
+EDFW + + + +IV +T LV+ + KC Y+ E+ E+GNI + K K
Sbjct: 115 FEDFWRXIWEQNTGIIVXITNLVEKGRR-KCDQYWPTENS-EEYGNIIVTLKSTKIHACY 172
Query: 202 TETALVLRNLEVNYKESEEPPMS-----VLHIQYPEWPDHGVPRDTLAVREILKRIYNL- 255
T +RN +V + P V+ Y +WPD GVP L V ++R
Sbjct: 173 TVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDXGVPEYALPVLTFVRRSSAAR 232
Query: 256 PPNFGPIVVHC 266
P GP++VHC
Sbjct: 233 XPETGPVLVHC 243
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 97.4 bits (241), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 120/229 (52%), Gaps = 25/229 (10%)
Query: 44 SFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRV 103
++FK++ + + ++E+ L+ I + A A N KNRY ++LP+D +RV
Sbjct: 33 AYFKKQQADSNCGFAEEYEDLKLVGISQPKYA-----AELAENRGKNRYNNVLPYDISRV 87
Query: 104 VLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVM 163
L + YINA+ + S+K FIATQGPLP+T +DFW MV + + I+M
Sbjct: 88 KLSVQTH---STDDYINANYMPGYHSKK--DFIATQGPLPNTLKDFWRMVWEKNVYAIIM 142
Query: 164 LTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL---VLRNLEV-NYKESE 219
LT+ V+ + KC +Y+ ++ +++G+I + T+E L +R+ V N + SE
Sbjct: 143 LTKCVEQGR-TKCEEYWPSKQA-QDYGDITVAM----TSEIVLPEWTIRDFTVKNIQTSE 196
Query: 220 EPPMSVLHIQYPEWPDHGVPRDT---LAVREILKRIYNLPPNFGPIVVH 265
P+ H + WPDHGVP T + R +++ P PI+VH
Sbjct: 197 SHPLRQFH--FTSWPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVH 243
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 120/229 (52%), Gaps = 20/229 (8%)
Query: 43 LSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNR 102
L++ ++ L+N+ R +++E+ L A + +P+ C A N+ KNR+ D LP+D R
Sbjct: 18 LAYMEDHLRNRDR-LAKEWQALCAYQAEPNT----CATAQGEGNIKKNRHPDFLPYDHAR 72
Query: 103 VVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIV 162
+ LK + P+ YINAS I ++ +IATQGPL HT DFW+MV + C VIV
Sbjct: 73 IKLK--VESSPSRSDYINASPI-IEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIV 129
Query: 163 MLTRLVDNYKMVKCGDYFQAEDGPREFG--NIGIVTKWIKTTETALVLRNLEVNYKESEE 220
MLT LV++ VK D + ++G + + +V++ I + ++R+ + +++E
Sbjct: 130 MLTPLVED--GVKQCDRYWPDEGASLYHVYEVNLVSEHIWCED--FLVRSFYLKNVQTQE 185
Query: 221 PPMSVLHIQYPEWPDHGVPRDT---LAVREILKRIYNLPPNFGPIVVHC 266
++ + WP G P T L R + + Y PI+VHC
Sbjct: 186 -TRTLTQFHFLSWPAEGTPASTRPLLDFRRKVNKCYR--GRSCPIIVHC 231
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 23/216 (10%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 33 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 85
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 86 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 140
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 141 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 193
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHC 266
PDH P + ++ + P GPIVVHC
Sbjct: 194 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHC 229
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 23/216 (10%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHC 266
PDH P + ++ + P GPIVVHC
Sbjct: 205 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHC 240
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 110/216 (50%), Gaps = 23/216 (10%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 43 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 95
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 96 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 150
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 151 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 203
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHC 266
PDH P + ++ + P GPIVVHC
Sbjct: 204 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHC 239
>pdb|3D42|A Chain A, Crystal Structure Of Heptp In Complex With A
Monophosphorylated Erk2 Peptide
pdb|3D44|A Chain A, Crystal Structure Of Heptp In Complex With A Dually
Phosphorylated Erk2 Peptide Mimetic
Length = 308
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 23/215 (10%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY DILP ++RV L + +
Sbjct: 43 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKDILPNPQSRVCLGRAQSQEDG 95
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 96 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 150
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 151 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 203
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVH 265
PDH P + ++ + P GPIVVH
Sbjct: 204 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVH 238
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/230 (31%), Positives = 120/230 (52%), Gaps = 25/230 (10%)
Query: 44 SFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRV 103
++FK++ + + ++E+ L+ I + A A N KNRY ++LP+D +RV
Sbjct: 33 AYFKKQQADSNCGFAEEYEDLKLVGISQPKYA-----AELAENRGKNRYNNVLPYDISRV 87
Query: 104 VLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVM 163
L + YINA+ + S+K FIATQGPLP+T +DFW MV + + I+M
Sbjct: 88 KLSVQTH---STDDYINANYMPGYHSKK--DFIATQGPLPNTLKDFWRMVWEKNVYAIIM 142
Query: 164 LTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL---VLRNLEV-NYKESE 219
LT+ V+ + KC +Y+ ++ +++G+I + T+E L +R+ V N + SE
Sbjct: 143 LTKCVEQGR-TKCEEYWPSKQA-QDYGDITVAM----TSEIVLPEWTIRDFTVKNIQTSE 196
Query: 220 EPPMSVLHIQYPEWPDHGVPRDT---LAVREILKRIYNLPPNFGPIVVHC 266
P+ H + PDHGVP T + R +++ P PI+VHC
Sbjct: 197 SHPLRQFH--FTSAPDHGVPDTTDLLINFRYLVRDYMKQSPPESPILVHC 244
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 99/191 (51%), Gaps = 16/191 (8%)
Query: 80 VALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQ 139
VA N +KNRY +I+ +D +RV+L+ +D + YINA+ I ++ S +IATQ
Sbjct: 63 VAKKDQNRAKNRYGNIIAYDHSRVILQPVED--DPSSDYINANYID--GYQRPSHYIATQ 118
Query: 140 GPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWI 199
GP+ T DFW M+ Q IVM+T LV+ + VKC Y+ D +G+ + +
Sbjct: 119 GPVHETVYDFWRMIWQEQSACIVMVTNLVEVGR-VKCYKYW--PDDTEVYGDFKVTCVEM 175
Query: 200 KTTETALVLRNLEV---NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRI-YNL 255
+ V+R + Y E E V + WPDHGVP + ++R+ +
Sbjct: 176 EPL-AEYVVRTFTLERRGYNEIRE----VKQFHFTGWPDHGVPYHATGLLSFIRRVKLSN 230
Query: 256 PPNFGPIVVHC 266
PP+ GPIVVHC
Sbjct: 231 PPSAGPIVVHC 241
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 23/216 (10%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E V HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---DVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHC 266
PDH P + ++ + P GPIVVHC
Sbjct: 205 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHC 240
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 18/223 (8%)
Query: 49 KLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQC 108
++ + ++ +EF L A I+ + C A N KNRY +ILP+D +RV L
Sbjct: 23 RMADDNKLFREEFNALPACPIQAT-----CEAASKEENKEKNRYVNILPYDHSRVHLTPV 77
Query: 109 KDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLV 168
+ + YINAS I+ ++ ++FIA QGP T DFW M+ + + IVM+T L
Sbjct: 78 EGVPDS--DYINASFIN--GYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLK 133
Query: 169 DNYKMVKCGDYFQAEDGPREFGNIGI----VTKWIKTTETALVLRNLEVNYKESEEPPMS 224
+ K KC Y+ + G +GN+ + VT + T ++ +V + +P
Sbjct: 134 ER-KECKCAQYW-PDQGCWTYGNVRVSVEDVTVLVDYTVRKFCIQ--QVGDVTNRKPQRL 189
Query: 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNF-GPIVVHC 266
+ + WPD GVP + + + LK++ P + G IVVHC
Sbjct: 190 ITQFHFTSWPDFGVPFTPIGMLKFLKKVKACNPQYAGAIVVHC 232
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 94.4 bits (233), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 95/183 (51%), Gaps = 8/183 (4%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +ILP D +RV+L Q D P + YINAS I + ++FIA QGP T
Sbjct: 54 NREKNRYPNILPNDHSRVILSQL-DGIPCS-DYINASYIDGYKEK--NKFIAAQGPKQET 109
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGI-VTKWIKTTET 204
DFW MV + IVMLT L + K KC Y+ + G +GNI + V + +
Sbjct: 110 VNDFWRMVWEQKSATIVMLTNLKER-KEEKCHQYW-PDQGCWTYGNIRVCVEDCVVLVDY 167
Query: 205 ALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIV 263
+ ++ + + P V + + WPD GVP + + + LK++ L P + GPIV
Sbjct: 168 TIRKFCIQPQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGMLKFLKKVKTLNPVHAGPIV 227
Query: 264 VHC 266
VHC
Sbjct: 228 VHC 230
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 102/218 (46%), Gaps = 21/218 (9%)
Query: 57 ISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVL--KQCKDYRPA 114
+ +EF +L RI M G A N+ K R I+P+D NRV+L K+ ++Y
Sbjct: 321 LEEEFRKLTNVRIMKENMRTGNLPA----NMKKARVIQIIPYDFNRVILSMKRGQEYT-- 374
Query: 115 ARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMV 174
YINAS I + FIATQGPL HT EDFW M+ ++ IVMLT V +
Sbjct: 375 --DYINASFIDGYRQKDY--FIATQGPLAHTVEDFWRMIWEWKSHTIVMLTE-VQEREQD 429
Query: 175 KCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESE----EPPMSVLHIQY 230
KC Y+ E G G I I K T A+ +R+ V + + E V +
Sbjct: 430 KCYQYWPTE-GSVTHGEITIEIK-NDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHF 487
Query: 231 PEWPDHGVPRDTLAVREILKRIYNLPPNFG--PIVVHC 266
WP+ G+P + + +++ + G PI VHC
Sbjct: 488 HGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHC 525
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/216 (32%), Positives = 109/216 (50%), Gaps = 23/216 (10%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVHC 266
P H P + ++ + P GPIVVHC
Sbjct: 205 PAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVHC 240
>pdb|2HVL|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant
pdb|2QDP|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s
Mutant Crystallized In Ammonium Acetate
Length = 309
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 23/215 (10%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVH 265
PDH P + ++ + P GPIVVH
Sbjct: 205 PDHQTPESAGPLLRLVAEVEESPETAAHPGPIVVH 239
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 92.8 bits (229), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 98/203 (48%), Gaps = 36/203 (17%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
NL KNRY D+ D+ RV L + + YINAS + ++ + +I TQGPL +T
Sbjct: 52 NLEKNRYGDVPCLDQTRVKLTKRSGH--TQTDYINASFMD--GYKQKNAYIGTQGPLENT 107
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPR-EFG-----NIGI--VTK 197
Y DFW MV + VIVM TR + + KCG Y+ E R FG N+G+ +
Sbjct: 108 YRDFWLMVWEQKVLVIVMTTRFEEGGRR-KCGQYWPLEKDSRIRFGFLTVTNLGVENMNH 166
Query: 198 WIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP- 256
+ KTT LE++ E E V H Q+ WPD+GVP ++ + L+ + N
Sbjct: 167 YKKTT--------LEIHNTE-ERQKRQVTHFQFLSWPDYGVPSSAASLIDFLRVVRNQQS 217
Query: 257 ---PNFG----------PIVVHC 266
N G PIVVHC
Sbjct: 218 LAVSNMGARSKGQCPEPPIVVHC 240
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 20/188 (10%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARG-----YINASLISTSSSEKVSQFIATQG 140
N+ KNR I+P++ NRV++ P RG Y+NAS I + +IA+QG
Sbjct: 9 NMKKNRVLQIIPYEFNRVII-------PVKRGEENTDYVNASFID--GYRQKDSYIASQG 59
Query: 141 PLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIK 200
PL HT EDFW M+ ++ IVMLT L + KC Y+ + DG +G+I + K +
Sbjct: 60 PLLHTIEDFWRMIWEWKSCSIVMLTEL-EERGQEKCAQYWPS-DGLVSYGDITVELKKEE 117
Query: 201 TTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFG 260
E+ V L N +E++ + H + WP+ G+P D + I+ + G
Sbjct: 118 ECESYTVRDLLVTNTRENKSRQIRQFH--FHGWPEVGIPSDGKGMINIIAAVQKQQQQSG 175
Query: 261 --PIVVHC 266
PI VHC
Sbjct: 176 NHPITVHC 183
>pdb|2QDM|A Chain A, Crystal Structure Of The Heptp Catalytic Domain
C270sD236AQ314A Mutant
Length = 309
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 108/215 (50%), Gaps = 23/215 (10%)
Query: 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPA 114
+++ +EF ++ ++ + P ++ + G + SK+RY ILP ++RV L + +
Sbjct: 44 KQLEEEFLKIPSNFVSPEDLD------IPG-HASKDRYKTILPNPQSRVCLGRAQSQEDG 96
Query: 115 ARGYINASLI-STSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKM 173
YINA+ I EKV +IATQGP+P+T DFWEMV Q +IVMLT+L + +
Sbjct: 97 --DYINANYIRGYDGKEKV--YIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLREGKE- 151
Query: 174 VKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233
KC Y+ E+ +G I + +K V R L + Y+E SV HI + W
Sbjct: 152 -KCVHYWPTEE--ETYGPFQIRIQDMKECPEYTV-RQLTIQYQEERR---SVKHILFSAW 204
Query: 234 PDHGVPRDTLAVREILKRIYNLPPNF---GPIVVH 265
P H P + ++ + P GPIVVH
Sbjct: 205 PAHQTPESAGPLLRLVAEVEESPETAAHPGPIVVH 239
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 27/238 (11%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 24 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 83
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 84 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 139
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 140 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 194
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVHC 266
V + ++ Y WPDH VP ++ IL+ I+++ + PI +HC
Sbjct: 195 VKFNSETR---TIYQFHYKNWPDHDVPS---SIDPILELIWDVRCYQEDDSVPICIHC 246
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine
Phosphatase Catalytic Domain
Length = 302
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 27/238 (11%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 5 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 64
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 65 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 120
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 121 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 175
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVHC 266
V + ++ Y WPDH VP ++ IL+ I+++ + PI +HC
Sbjct: 176 VKFNSETR---TIYQFHYKNWPDHDVPS---SIDPILELIWDVRCYQEDDSVPICIHC 227
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/238 (31%), Positives = 115/238 (48%), Gaps = 27/238 (11%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 5 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 64
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 65 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 120
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 121 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 175
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVHC 266
V + ++ Y WPDH VP ++ IL+ I+++ + PI +HC
Sbjct: 176 VKFNSETR---TIYQFHYKNWPDHDVPS---SIDPILELIWDVRCYQEDDSVPICIHC 227
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 32/218 (14%)
Query: 58 SQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARG 117
S+E LQ +KP + C + N KNRY +ILP+D RV L G
Sbjct: 52 SKELENLQ--ELKPLDQ---CLIGQTKENRRKNRYKNILPYDATRVPLGD-------EGG 99
Query: 118 YINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCG 177
YINAS I ++ +IA QGPLP T DFW+M+ + VI M+T+ V+ K +KC
Sbjct: 100 YINASFIKIPVGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEK-IKCQ 158
Query: 178 DYFQAEDGPREFGNIGIVTKWIKTTET------ALVLRNLEVNYKESEEPPMSVLHIQYP 231
Y+ P G +V+ ++ V+R + + ++ E + H+ +
Sbjct: 159 RYW-----PNILGKTTMVSNRLRLALVRMQQLKGFVVRAMTLEDIQTRE-VRHISHLNFT 212
Query: 232 EWPDHGVPR---DTLAVREILKRIYNLPPNFGPIVVHC 266
WPDH P D L ++ I+ GPI+ HC
Sbjct: 213 AWPDHDTPSQPDDLLTFISYMRHIH----RSGPIITHC 246
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/184 (36%), Positives = 98/184 (53%), Gaps = 14/184 (7%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N +KNRY +I+ +D +RV L D P + YINA+ I + +IATQGP+ T
Sbjct: 47 NRNKNRYGNIISYDHSRVRLL-VLDGDPHS-DYINANYID--GYHRPRHYIATQGPMQET 102
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA 205
+DFW M+ Q + IVM+T LV+ + VKC Y+ D +G+I + I+T A
Sbjct: 103 VKDFWRMIWQENSASIVMVTNLVEVGR-VKCVRYW--PDDTEVYGDIKVTL--IETEPLA 157
Query: 206 -LVLRNLEVNYKESEE-PPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPI 262
V+R V K E + + H + WPDHGVP + ++++ L PP GPI
Sbjct: 158 EYVIRTFTVQKKGYHEIRELRLFH--FTSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPI 215
Query: 263 VVHC 266
VVHC
Sbjct: 216 VVHC 219
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 20/195 (10%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N ++R +++P+++NRV L K+ GYINAS I +IATQGPLPHT
Sbjct: 71 NAERSRIREVVPYEENRVELIPTKENNT---GYINASHIKVVVGGAEWHYIATQGPLPHT 127
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYF---QAEDGPREFGNIGIVTKWIKTT 202
DFW+MV + VI M+T + + K Y+ ++ +G + TK+ +T
Sbjct: 128 CHDFWQMVWEQGVNVIAMVTAEEEGGR-TKSHRYWPKLGSKHSSATYGKFKVTTKF-RTD 185
Query: 203 ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFG-- 260
L+V + S + +V H+QY +WPDHG P D L+ I ++ +
Sbjct: 186 SVCYATTGLKVKHLLSGQ-ERTVWHLQYTDWPDHGCPEDVQGFLSYLEEIQSVRRHTNSM 244
Query: 261 ---------PIVVHC 266
PIVVHC
Sbjct: 245 LEGTKNRHPPIVVHC 259
>pdb|2QEP|A Chain A, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
pdb|2QEP|B Chain B, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
Length = 304
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 34/236 (14%)
Query: 43 LSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNR 102
LS+ ++ L+NK+R + +E+ L A + +P+ VA N+ KNR +L +D +R
Sbjct: 19 LSYMEDHLKNKNR-LEKEWEALCAYQAEPN----SSFVAQREENVPKNRSLAVLTYDHSR 73
Query: 103 VVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIV 162
V+LK + + YINAS I + +IATQGPLP T DFW+MV + C VIV
Sbjct: 74 VLLKAENSH--SHSDYINASPI-MDHDPRNPAYIATQGPLPATVADFWQMVWESGCVVIV 130
Query: 163 MLTRLVDNYKMVKCGDYFQAEDGPREFGN------IGIVTKWIKTTE---TALVLRNLEV 213
MLT L +N + +C Y+ P E N + +V++ I + + L+NL+
Sbjct: 131 MLTPLAEN-GVRQCYHYW-----PDEGSNLYHIYEVNLVSEHIWCEDFLVRSFYLKNLQT 184
Query: 214 NYKESEEPPMSVLHIQYPEWPDHGVP---RDTLAVREILKRIYNLPPNFGPIVVHC 266
N +V + W D GVP R L R + + Y PI+VHC
Sbjct: 185 N------ETRTVTQFHFLSWYDRGVPSSSRSLLDFRRKVNKCYR--GRSCPIIVHC 232
>pdb|3OLR|A Chain A, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|B Chain B, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|C Chain C, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OLR|D Chain D, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide
1
pdb|3OMH|A Chain A, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|B Chain B, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|C Chain C, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
pdb|3OMH|D Chain D, Crystal Structure Of Ptpn22 In Complex With Skap-Hom
Ptyr75 Peptide
Length = 313
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/237 (31%), Positives = 114/237 (48%), Gaps = 27/237 (11%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 24 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 83
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 84 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 139
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 140 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 194
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVH 265
V + ++ Y WPDH VP ++ IL+ I+++ + PI +H
Sbjct: 195 VKFNSETR---TIYQFHYKNWPDHDVPS---SIDPILELIWDVRCYQEDDSVPICIH 245
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 84.7 bits (208), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 91/182 (50%), Gaps = 13/182 (7%)
Query: 88 SKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYE 147
+KNRY ILP +RV L+ K+ + YINA+ I S K FIATQGP+ +T
Sbjct: 58 TKNRYKTILPNPLSRVCLRP-KNITDSLSTYINANYIRGYSG-KEKAFIATQGPMINTVN 115
Query: 148 DFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALV 207
DFW+MV Q PVIVM+T+L + K KC Y+ + G +G + ++ + +
Sbjct: 116 DFWQMVWQEDSPVIVMITKLKE--KNEKCVLYWPEKRGI--YGKVEVLVTGVTECDN-YT 170
Query: 208 LRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYN---LPPNFGPIVV 264
+RNL + + V H Y WPDH P + +++ + GP+VV
Sbjct: 171 IRNLVLKQGSHTQ---HVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASEGRGPVVV 227
Query: 265 HC 266
HC
Sbjct: 228 HC 229
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/182 (34%), Positives = 92/182 (50%), Gaps = 13/182 (7%)
Query: 88 SKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYE 147
+KNRY ILP +RV L+ K+ + YINA+ I S K FIATQGP+ +T +
Sbjct: 45 TKNRYKTILPNPLSRVCLRP-KNVTDSLSTYINANYIRGYSG-KEKAFIATQGPMINTVD 102
Query: 148 DFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALV 207
DFW+MV Q PVIVM+T+L + K KC Y+ + G +G + ++ + +
Sbjct: 103 DFWQMVWQEDSPVIVMITKLKE--KNEKCVLYWPEKRGI--YGKVEVLVISVNECDN-YT 157
Query: 208 LRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYN---LPPNFGPIVV 264
+RNL + + V H Y WPDH P + +++ + GP+VV
Sbjct: 158 IRNLVLKQGSHTQ---HVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRLASQGRGPVVV 214
Query: 265 HC 266
HC
Sbjct: 215 HC 216
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 84.0 bits (206), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 104/215 (48%), Gaps = 23/215 (10%)
Query: 57 ISQEFARLQ-ASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAA 115
S+EF L+ R +P CT A N KNR+T+ILP+D +R L+ D
Sbjct: 46 FSEEFEELKHVGRDQP------CTFADLPCNRPKNRFTNILPYDHSRFKLQPVDD--DEG 97
Query: 116 RGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVK 175
YINA+ + +S + +FI TQGPL T +DFW M + + IVMLTR + + K
Sbjct: 98 SDYINANYVPGHNSPR--EFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGRE-K 154
Query: 176 CGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPD 235
C Y+ + P +G+I + + + + A + + + SE+ + H + WPD
Sbjct: 155 CDQYWPNDTVPVFYGDIKV--QILNDSHYADWVMTEFMLCRGSEQRILR--HFHFTTWPD 210
Query: 236 HGVPR--DTLA--VREILKRIYNLPPNFGPIVVHC 266
GVP TL VR RI PIVVHC
Sbjct: 211 FGVPNPPQTLVRFVRAFRDRI---GAEQRPIVVHC 242
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 113/237 (47%), Gaps = 27/237 (11%)
Query: 41 EALSFFKEKLQNKS---REISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDIL 96
E L F ++ Q+K E + EF +L+ K ++ TVA N+ KNRY DIL
Sbjct: 5 EILQKFLDEAQSKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDIL 64
Query: 97 PFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQY 156
P+D +RV L ++ YINA+ I K +IATQGPL T DFW M+ +Y
Sbjct: 65 PYDYSRVELSLITSDEDSS--YINANFIKGVYGPKA--YIATQGPLSTTLLDFWRMIWEY 120
Query: 157 HCPVIVMLTRLVDNYKM--VKCGDYFQAEDGPR--EFGNIGIVTKWIKTTETALVLRNLE 212
+IVM Y+M KC Y+ AE G EFG + + + ++ ++R L+
Sbjct: 121 SVLIIVMACM---EYEMGKKKCERYW-AEPGEMQLEFGPFSVSCE-AEKRKSDYIIRTLK 175
Query: 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL----PPNFGPIVVH 265
V + ++ Y WP H VP ++ IL+ I+++ + PI +H
Sbjct: 176 VKFNSETR---TIYQFHYKNWPAHDVPS---SIDPILELIWDVRCYQEDDSVPICIH 226
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 102/243 (41%), Gaps = 36/243 (14%)
Query: 40 SEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFD 99
S F K +Q + + +EF+ L E R + A N KNRY DIL
Sbjct: 4 SNCFPFTKLSVQAQYERVQREFSLLLRQ-----EDPRSISFATSLKNRHKNRYLDIL--- 55
Query: 100 KNRVVLKQCKDYRPAARG--YINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYH 157
N L P A YIN +LI K F+A Q P+ DF M+ +
Sbjct: 56 ANEATLYPQVTDAPGASTPYYINGNLIDLDLPHK---FVACQAPVVQGIPDFLAMLYEKK 112
Query: 158 CPVIVMLTRLVDNYKMVKCGDYFQAEDGPREF---GNIGI-----------VTKWIKTTE 203
+++M+T+L + VK Y+ E G GN G+ V +K T
Sbjct: 113 ISLVIMVTKLEEG-GFVKADRYWPEERGSGSIAVSGNCGLTISEDPGKAYEVEDELKITR 171
Query: 204 TALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIV 263
L+L + ++EPP +QY WPDHG+P+ ++ +L + N P P+V
Sbjct: 172 RYLIL-------QRADEPPHKFTQVQYTGWPDHGIPQSATSLEALLTNVKNSPTTV-PVV 223
Query: 264 VHC 266
VHC
Sbjct: 224 VHC 226
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 91/183 (49%), Gaps = 12/183 (6%)
Query: 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHT 145
N KNRY +I+ +D +RV L+ + YIN + I + + +IATQGP+ T
Sbjct: 45 NRMKNRYGNIIAYDHSRVRLQTIEG--DTNSDYINGNYID--GYHRPNHYIATQGPMQET 100
Query: 146 YEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETA 205
DFW MV + I+M+T LV+ + VKC Y+ D + +I + I+T A
Sbjct: 101 IYDFWRMVWHENTASIIMVTNLVEVGR-VKCCKYWP--DDTEIYKDIKVTL--IETELLA 155
Query: 206 -LVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-PPNFGPIV 263
V+R V K + + WPDHGVP + ++++ + PP+ GP+V
Sbjct: 156 EYVIRTFAVE-KRGVHEIREIRQFHFTGWPDHGVPYHATGLLGFVRQVKSKSPPSAGPLV 214
Query: 264 VHC 266
VHC
Sbjct: 215 VHC 217
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/184 (34%), Positives = 88/184 (47%), Gaps = 14/184 (7%)
Query: 87 LSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTY 146
+ KNRY ILP +RV L P + YINA+ I E+ +IATQGP+ T
Sbjct: 65 VRKNRYKTILPNPHSRVCLTSPDPDDPLS-SYINANYIRGYGGEE-KVYIATQGPIVSTV 122
Query: 147 EDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL 206
DFW MV Q H P+IVM+T + + + KC +Y+ E + I V K I T + L
Sbjct: 123 ADFWRMVWQEHTPIIVMITNIEEMNE--KCTEYWPEEQVAYDGVEI-TVQKVIHTEDYRL 179
Query: 207 VLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDT----LAVREILKRIYNLPPNFGPI 262
L +L+ +E + H + WPD P VRE+ + P+ PI
Sbjct: 180 RLISLKSGTEER-----GLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPI 234
Query: 263 VVHC 266
+VHC
Sbjct: 235 IVHC 238
>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
Phosphatase) In Complex With Phosphotyrosine
Length = 305
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 87/183 (47%), Gaps = 14/183 (7%)
Query: 87 LSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTY 146
+ KNRY ILP +RV L P + YINA+ I E+ +IATQGP+ T
Sbjct: 65 VRKNRYKTILPNPHSRVCLTSPDPDDPLS-SYINANYIRGYGGEE-KVYIATQGPIVSTV 122
Query: 147 EDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL 206
DFW MV Q H P+IVM+T + + + KC +Y+ E + I V K I T + L
Sbjct: 123 ADFWRMVWQEHTPIIVMITNIEEMNE--KCTEYWPEEQVAYDGVEI-TVQKVIHTEDYRL 179
Query: 207 VLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDT----LAVREILKRIYNLPPNFGPI 262
L +L+ +E + H + WPD P VRE+ + P+ PI
Sbjct: 180 RLISLKSGTEER-----GLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPI 234
Query: 263 VVH 265
+VH
Sbjct: 235 IVH 237
>pdb|2BV5|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 At 1.8a Resolution
Length = 282
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 87/183 (47%), Gaps = 14/183 (7%)
Query: 87 LSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTY 146
+ KNRY ILP +RV L P + YINA+ I E+ +IATQGP+ T
Sbjct: 44 VRKNRYKTILPNPHSRVCLTSPDPDDPLS-SYINANYIRGYGGEE-KVYIATQGPIVSTV 101
Query: 147 EDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETAL 206
DFW MV Q H P+IVM+T + + + KC +Y+ E + I V K I T + L
Sbjct: 102 ADFWRMVWQEHTPIIVMITNIEEMNE--KCTEYWPEEQVAYDGVEI-TVQKVIHTEDYRL 158
Query: 207 VLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDT----LAVREILKRIYNLPPNFGPI 262
L +L+ +E + H + WPD P VRE+ + P+ PI
Sbjct: 159 RLISLKSGTEER-----GLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQQEGPHCAPI 213
Query: 263 VVH 265
+VH
Sbjct: 214 IVH 216
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 74/247 (29%), Positives = 105/247 (42%), Gaps = 39/247 (15%)
Query: 40 SEALSFFKEKLQNKSR--EISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILP 97
S A SF +L +++ + +EF +LQ E R N KNRY DIL
Sbjct: 2 STAKSFPMAQLSTRAQYSRMQREFVQLQRQ-----ENPRNINFTTSLKNRHKNRYLDILA 56
Query: 98 FDKNRV--VLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQ 155
++ VLK +P YIN +LI F+A Q P+P DF E + +
Sbjct: 57 NEETIYPPVLKAV-GAQPGRYPYINGNLIDLDLPHT---FVACQAPVPQGVPDFLETLSE 112
Query: 156 YHCPVIVMLTRLVDNYKMVKCGDYF-QAEDGPREFGNIGIVTKWIKTTETALVLRNLEVN 214
++VMLT+L + ++K Y+ + E+ F G IK T R+ E +
Sbjct: 113 KKVDLVVMLTKLREG-GVLKAERYWPEEEEDSLSFPESG--HDAIKVT------RDAEAS 163
Query: 215 YKESEE---------------PPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNF 259
Y+ E P VL +QY WPDHGVP + E+L I N
Sbjct: 164 YEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWPDHGVPESAASFDELLSVIKNCVTT- 222
Query: 260 GPIVVHC 266
PI+VHC
Sbjct: 223 SPILVHC 229
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
Query: 52 NKSREISQEFARLQASRIK-PSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKD 110
N+S E ++E A L A R P E+ C V L+ + + F K+ V+ +
Sbjct: 31 NRSPEKAEELAALGAERAATPXEVVESCPVTF--AMLADPAAAEEVCFGKHGVL-----E 83
Query: 111 YRPAARGYINASLISTSSSEKVSQFIATQG 140
RGY++ S + ++S+++ + +G
Sbjct: 84 GIGEGRGYVDMSTVDPATSQRIGVAVVAKG 113
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 195 VTKWIKTT--ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP 239
+ KW T +TA V R+ ++ YK+ +E ++ H E+PD P
Sbjct: 7 IEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSP 53
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 27.7 bits (60), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 195 VTKWIKTT--ETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVP 239
+ KW T +TA V R+ ++ YK+ +E ++ H E+PD P
Sbjct: 7 IEKWAAETPDQTAFVWRDAKITYKQLKEDSDALAHWISSEYPDDRSP 53
>pdb|2JGB|A Chain A, Structure Of Human Eif4e Homologous Protein 4ehp With
M7gtp
pdb|2JGC|A Chain A, Structure Of The Human Eif4e Homologous Protein, 4ehp
Without Ligand Bound
Length = 195
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 206 LVLRNLEVNYKESEEPPMSVLHIQYPE-----WPDHGVPRDTLA-VREILKRIYNLPPN 258
L+L L + EE +V+ +++ E W + T A +R+ L+R+ NLPPN
Sbjct: 112 LILAMLGEQFMVGEEICGAVVSVRFQEDIISIWNKTASDQATTARIRDTLRRVLNLPPN 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,357,606
Number of Sequences: 62578
Number of extensions: 318463
Number of successful extensions: 1114
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 112
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)