Query 023691
Match_columns 278
No_of_seqs 228 out of 1663
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 05:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023691.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023691hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02742 protein tyrosine phos 100.0 1.5E-60 3.2E-65 426.3 22.2 209 55-277 26-251 (303)
2 PHA02740 protein tyrosine phos 100.0 4.1E-60 8.9E-65 421.1 20.7 215 40-277 12-243 (298)
3 PHA02747 protein tyrosine phos 100.0 9.7E-60 2.1E-64 422.4 20.4 224 39-277 11-251 (312)
4 PHA02746 protein tyrosine phos 100.0 7.1E-59 1.5E-63 418.4 21.9 212 55-277 25-269 (323)
5 KOG0790 Protein tyrosine phosp 100.0 3.7E-60 8E-65 421.4 10.0 217 55-277 244-473 (600)
6 PHA02738 hypothetical protein; 100.0 5.6E-58 1.2E-62 412.1 19.1 206 55-277 25-249 (320)
7 KOG4228 Protein tyrosine phosp 100.0 1.7E-56 3.6E-61 435.9 17.3 223 39-277 525-752 (1087)
8 KOG0792 Protein tyrosine phosp 100.0 6.7E-56 1.5E-60 427.4 19.2 225 40-277 855-1085(1144)
9 smart00194 PTPc Protein tyrosi 100.0 2E-54 4.3E-59 379.7 21.2 209 57-277 2-215 (258)
10 KOG0793 Protein tyrosine phosp 100.0 1.1E-53 2.5E-58 396.0 14.0 239 28-277 706-949 (1004)
11 KOG0791 Protein tyrosine phosp 100.0 1.7E-51 3.8E-56 360.9 14.6 221 42-276 83-308 (374)
12 cd00047 PTPc Protein tyrosine 100.0 6.9E-49 1.5E-53 339.2 19.3 182 88-277 1-188 (231)
13 COG5599 PTP2 Protein tyrosine 100.0 3E-48 6.5E-53 326.5 16.7 188 78-277 45-240 (302)
14 PF00102 Y_phosphatase: Protei 100.0 3.3E-46 7.1E-51 321.9 15.1 185 86-277 1-192 (235)
15 PRK15375 pathogenicity island 100.0 3.3E-43 7.2E-48 322.1 20.8 221 30-276 252-487 (535)
16 KOG4228 Protein tyrosine phosp 100.0 4E-44 8.6E-49 349.5 12.6 237 26-277 776-1040(1087)
17 KOG0789 Protein tyrosine phosp 100.0 1.2E-39 2.5E-44 304.1 18.5 187 82-276 123-320 (415)
18 smart00012 PTPc_DSPc Protein t 99.2 2.6E-11 5.6E-16 90.9 4.0 53 225-277 2-61 (105)
19 smart00404 PTPc_motif Protein 99.2 2.6E-11 5.6E-16 90.9 4.0 53 225-277 2-61 (105)
20 PTZ00242 protein tyrosine phos 98.3 6.2E-07 1.3E-11 73.5 4.0 33 133-165 16-48 (166)
21 PTZ00393 protein tyrosine phos 97.8 4.9E-05 1.1E-09 65.2 6.5 95 133-275 92-190 (241)
22 cd00127 DSPc Dual specificity 97.0 0.00067 1.4E-08 53.2 3.8 49 224-275 49-101 (139)
23 COG2453 CDC14 Predicted protei 95.9 0.0082 1.8E-07 49.8 3.6 42 232-274 79-124 (180)
24 PF03162 Y_phosphatase2: Tyros 95.3 0.013 2.7E-07 47.9 2.7 50 224-275 58-111 (164)
25 KOG1720 Protein tyrosine phosp 95.3 0.024 5.3E-07 47.5 4.1 48 225-275 116-167 (225)
26 smart00195 DSPc Dual specifici 95.2 0.026 5.6E-07 44.2 4.2 32 244-275 63-98 (138)
27 PF05706 CDKN3: Cyclin-depende 94.4 0.032 6.9E-07 45.4 2.5 120 115-274 23-152 (168)
28 PF13350 Y_phosphatase3: Tyros 93.5 0.063 1.4E-06 43.6 2.9 33 136-169 22-54 (164)
29 KOG2836 Protein tyrosine phosp 92.7 0.54 1.2E-05 36.8 6.6 35 133-167 17-51 (173)
30 PF00782 DSPc: Dual specificit 89.1 0.11 2.4E-06 40.2 -0.1 31 242-275 59-93 (133)
31 PF14566 PTPlike_phytase: Inos 88.5 0.48 1E-05 38.0 3.2 41 233-275 100-144 (149)
32 PF04273 DUF442: Putative phos 84.9 1.1 2.5E-05 33.9 3.4 32 241-275 71-105 (110)
33 TIGR01244 conserved hypothetic 84.3 2.3 4.9E-05 33.3 5.0 32 241-275 71-105 (135)
34 COG5350 Predicted protein tyro 82.7 2.3 5E-05 34.1 4.3 36 232-268 66-102 (172)
35 PRK12361 hypothetical protein; 82.0 1.5 3.2E-05 42.8 3.7 48 225-274 143-194 (547)
36 KOG2283 Clathrin coat dissocia 81.2 1.3 2.9E-05 41.7 2.9 43 231-274 78-126 (434)
37 COG2365 Protein tyrosine/serin 79.9 1.7 3.6E-05 38.0 3.0 31 243-275 122-156 (249)
38 KOG4471 Phosphatidylinositol 3 61.5 5.7 0.00012 38.7 2.2 19 257-275 372-394 (717)
39 PF10727 Rossmann-like: Rossma 58.8 18 0.0004 28.0 4.3 25 244-268 80-105 (127)
40 PF06165 Glyco_transf_36: Glyc 54.3 35 0.00076 25.6 5.1 42 190-233 48-89 (110)
41 PLN02727 NAD kinase 51.4 18 0.00039 37.4 3.9 33 241-275 325-361 (986)
42 PF02061 Lambda_CIII: Lambda P 50.8 25 0.00054 21.5 2.9 23 227-249 2-24 (45)
43 KOG1572 Predicted protein tyro 46.5 42 0.00091 29.1 4.8 31 243-275 134-168 (249)
44 KOG4514 Uncharacterized conser 45.4 77 0.0017 26.2 5.9 35 2-40 95-131 (222)
45 KOG1719 Dual specificity phosp 42.5 61 0.0013 26.3 4.9 44 224-268 75-118 (183)
46 KOG1147 Glutamyl-tRNA syntheta 38.7 7.6 0.00017 37.5 -0.8 30 132-161 474-503 (712)
47 KOG1718 Dual specificity phosp 26.6 66 0.0014 26.5 2.8 48 224-274 57-113 (198)
48 KOG1717 Dual specificity phosp 24.3 72 0.0016 28.3 2.7 21 245-268 240-260 (343)
49 COG5495 Uncharacterized conser 23.0 76 0.0016 27.6 2.6 13 260-272 92-107 (289)
50 PF11502 BCL9: B-cell lymphoma 22.0 1.3E+02 0.0028 18.4 2.7 20 31-50 2-21 (40)
51 COG5228 POP2 mRNA deadenylase 21.5 66 0.0014 27.6 1.9 21 136-156 176-196 (299)
52 PF06602 Myotub-related: Myotu 20.2 50 0.0011 30.4 1.1 17 259-275 231-251 (353)
No 1
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.5e-60 Score=426.29 Aligned_cols=209 Identities=30% Similarity=0.527 Sum_probs=181.8
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCccccceeecCCCCcccc
Q 023691 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQ 134 (278)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINAs~V~~~~~~~~~~ 134 (278)
..+.+||+.|..... ..++..+..++|..||||.||+|||+|||+|.... +.+||||||||+|+... ++
T Consensus 26 ~~i~~E~~~i~~~~~-----~~~~~~~~~~~N~~KNRy~~i~~~D~tRV~L~~~~----~~~dYINAsyI~g~~~~--~~ 94 (303)
T PHA02742 26 EILKEEHEHIMQEIV-----AFSCNESLELKNMKKCRYPDAPCFDRNRVILKIED----GGDDFINASYVDGHNAK--GR 94 (303)
T ss_pred HHHHHHHHHHhcCCC-----CCchhhccChhhhhcCCCCCCCCCCCCEEEeCCCC----CCCCcEEEeeecCCCCC--Ce
Confidence 679999999975432 35788888999999999999999999999998532 36899999999998643 79
Q ss_pred eecccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccC-CCCceeeeeeEEEEEEEEEecccEEEEEeee
Q 023691 135 FIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQA-EDGPREFGNIGIVTKWIKTTETALVLRNLEV 213 (278)
Q Consensus 135 yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~-~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v 213 (278)
|||||||+++|+.|||+||||++|.+|||||++.|++ +++|.+|||. +++...||.|+|++.++.. ..+|+++.|.|
T Consensus 95 fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g-~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~-~~~~~~~~l~l 172 (303)
T PHA02742 95 FICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDG-KEACYPYWMPHERGKATHGEFKIKTKKIKS-FRNYAVTNLCL 172 (303)
T ss_pred EEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCC-eeeccccCCCCCCCceEEEEEEEEEEEEEE-cCCEEEEEEEE
Confidence 9999999999999999999999999999999999976 5899999996 4577899999999988776 46899999999
Q ss_pred eecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCC------------CCCCCEEEEcCc----chhhheecC
Q 023691 214 NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP------------PNFGPIVVHCRY----WENWCILHN 277 (278)
Q Consensus 214 ~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~------------~~~~PivVHCs~----tGtfiald~ 277 (278)
.+.+.+. .|.|+||||++|||+|+|.++..+++|+..+++.. ...+|||||||| ||||||||+
T Consensus 173 ~~~~~~~-~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~ 251 (303)
T PHA02742 173 TDTNTGA-SLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDI 251 (303)
T ss_pred EECCCCc-eEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCchhHHHHHHHH
Confidence 9866555 57999999999999999999999999998776421 123799999998 999999986
No 2
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=4.1e-60 Score=421.13 Aligned_cols=215 Identities=18% Similarity=0.292 Sum_probs=178.7
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCC--CCCCCCCCCCeEEeeccCCCCCCCCC
Q 023691 40 SEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNR--YTDILPFDKNRVVLKQCKDYRPAARG 117 (278)
Q Consensus 40 ~~~l~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNR--y~~i~p~D~tRV~L~~~~~~~~~~~d 117 (278)
.++++++++.... .++.+||+.|..... ..++..+.+++|..||| |.||+||||+||+|.+ ++|
T Consensus 12 ~~f~~~~~~~~~~--~~i~~E~~~i~~~~~-----~~~~~~~~~~~n~~knr~r~~~i~~~D~sRV~L~~-------~~~ 77 (298)
T PHA02740 12 MDFINFINKPDLL--SCIIKEYRAIVPEHE-----DEANKACAQAENKAKDENLALHITRLLHRRIKLFN-------DEK 77 (298)
T ss_pred HHHHHHHhCCCHH--HHHHHHHHHHhccCc-----cchhhhhhchhhhcccccccCCcCCccCceEEecC-------CCC
Confidence 4445555543332 689999999975432 34667778899999996 6899999999999962 468
Q ss_pred ccccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEeccccccccccccc-ccccCCC-CceeeeeeEEE
Q 023691 118 YINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCG-DYFQAED-GPREFGNIGIV 195 (278)
Q Consensus 118 YINAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~-~YwP~~~-~~~~~g~~~V~ 195 (278)
|||||||+|+... ++|||||||+++|++|||+||||++|.+|||||+..| .+|. +|||.+. +...+|+|.|+
T Consensus 78 YINAnyVdG~~~~--~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e----~kc~~~YWP~~~~~~~~~g~f~V~ 151 (298)
T PHA02740 78 VLDARFVDGYDFE--QKFICIINLCEDACDKFLQALSDNKVQIIVLISRHAD----KKCFNQFWSLKEGCVITSDKFQIE 151 (298)
T ss_pred cEEEEEecCCCCC--CcEEEecCCchhhHHHHHHHHHhcCCCEEEEcccccc----ccccccCCCCCCCCeEEECCEEEE
Confidence 9999999999654 7999999999999999999999999999999999876 3798 9999854 45789999999
Q ss_pred EEEEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcC---------CCCCCCEEEEc
Q 023691 196 TKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL---------PPNFGPIVVHC 266 (278)
Q Consensus 196 ~~~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~---------~~~~~PivVHC 266 (278)
+.++.. ..+|++|.|.|++.. ++ .|.|+||||++|||+|+|.++..+++|+..+++. ....+||||||
T Consensus 152 ~~~~~~-~~~~~~~~l~l~~~~-~~-~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHC 228 (298)
T PHA02740 152 TLEIII-KPHFNLTLLSLTDKF-GQ-AQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDC 228 (298)
T ss_pred EEEEEe-cCCEEEEEEEEEcCC-CC-cEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEC
Confidence 888765 578999999998743 33 4799999999999999999999999998766531 22358999999
Q ss_pred Cc----chhhheecC
Q 023691 267 RY----WENWCILHN 277 (278)
Q Consensus 267 s~----tGtfiald~ 277 (278)
|| ||||||||+
T Consensus 229 SaGvGRTGtFcaiDi 243 (298)
T PHA02740 229 IDGISSSAVFCVFDI 243 (298)
T ss_pred CCCCchhHHHHHHHH
Confidence 99 999999996
No 3
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=9.7e-60 Score=422.37 Aligned_cols=224 Identities=29% Similarity=0.387 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCc
Q 023691 39 CSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGY 118 (278)
Q Consensus 39 ~~~~l~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dY 118 (278)
+.+++++.++.... ..+.+||+.|..... ...+..+..++|..||||.||+|||++||+|.... .+.+||
T Consensus 11 ~~~f~~~~~~~~~~--~~i~~E~~~i~~~~~-----~~~~~~~~~~~N~~kNRy~di~p~D~sRV~L~~~~---~~~~dY 80 (312)
T PHA02747 11 AIDFLKRRNQLNCF--GIIRDEHHQIILKPF-----DGLIANFEKPENQPKNRYWDIPCWDHNRVILDSGG---GSTSDY 80 (312)
T ss_pred HHHHHHHHhCCCHH--HHHHHHHHHHhcCCC-----CChhhhhhCchhhccCCCCCCCCCCCCEeEecCCC---CCCCCc
Confidence 34455544433322 579999999964321 23566777899999999999999999999998643 246899
Q ss_pred cccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEecccc-cccccccccccccCC-CCceeeeeeEEEE
Q 023691 119 INASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLV-DNYKMVKCGDYFQAE-DGPREFGNIGIVT 196 (278)
Q Consensus 119 INAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~-E~~~~~kc~~YwP~~-~~~~~~g~~~V~~ 196 (278)
||||||+|+... ++|||||+|+++|++|||+||||++|.+|||||++. |++ +++|.+|||.+ ++.+.+|+|.|++
T Consensus 81 INAsyV~g~~~~--~~yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g-~~kc~~YWp~~~~~~~~~g~~~V~~ 157 (312)
T PHA02747 81 IHANWIDGFEDD--KKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNG-EEKCYQYWCLNEDGNIDMEDFRIET 157 (312)
T ss_pred EEeeeecCCCCC--CeEEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCC-cccccccCCCCCCCCeEeeeEEEEE
Confidence 999999998643 799999999999999999999999999999999999 665 68999999974 6778999999998
Q ss_pred EEEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcC-----------CCCCCCEEEE
Q 023691 197 KWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-----------PPNFGPIVVH 265 (278)
Q Consensus 197 ~~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~-----------~~~~~PivVH 265 (278)
.++.. ..+|++|.|.|++...+. .|.|+||||++|||+|+|.+...+++|+..++.. ....+|||||
T Consensus 158 ~~~~~-~~~~~~~~l~l~~~~~~~-~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVH 235 (312)
T PHA02747 158 LKTSV-RAKYILTLIEITDKILKD-SRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVH 235 (312)
T ss_pred EEEEe-cCCeEEEEEEEEECCCCC-ceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEE
Confidence 88765 468999999999875554 5799999999999999999988888887655321 1123799999
Q ss_pred cCc----chhhheecC
Q 023691 266 CRY----WENWCILHN 277 (278)
Q Consensus 266 Cs~----tGtfiald~ 277 (278)
||| ||||||||+
T Consensus 236 CsaGvGRtGtfcaidi 251 (312)
T PHA02747 236 CSDGVGKTGIFCAVDI 251 (312)
T ss_pred ecCCCcchhHHHHHHH
Confidence 999 999999986
No 4
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=7.1e-59 Score=418.38 Aligned_cols=212 Identities=30% Similarity=0.493 Sum_probs=179.3
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccCC-----------------CCCCCCC
Q 023691 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKD-----------------YRPAARG 117 (278)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~-----------------~~~~~~d 117 (278)
+.+.+||..|..... ..++..+..++|..||||.||+|||+|||+|....+ +..+++|
T Consensus 25 ~~~~~e~~~i~~~~~-----~~t~~~~~~~~N~~KNRy~di~p~D~sRV~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 99 (323)
T PHA02746 25 EFVLLEHAEVMDIPI-----RGTTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDSDGKKIEVTSEDNAEN 99 (323)
T ss_pred HHHHHHHHHHhcCCC-----CcchhhccChhhccccCCCCCCCCcCCEEEecCCCCccccccccccccccccccCCCCCC
Confidence 689999999986543 346778889999999999999999999999985321 0134589
Q ss_pred ccccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccCC-CCceeeeeeEEEE
Q 023691 118 YINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNIGIVT 196 (278)
Q Consensus 118 YINAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~-~~~~~~g~~~V~~ 196 (278)
|||||||+|+... ++|||||+|+++|++|||+||||++|.+|||||++.+ + ..+|.+|||.+ ++.+.||+|.|++
T Consensus 100 YINAsyV~g~~~~--~~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~e-~-~~kc~~YWP~~~~~~~~~g~~~V~~ 175 (323)
T PHA02746 100 YIHANFVDGFKEA--NKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDD-D-DEKCFELWTKEEDSELAFGRFVAKI 175 (323)
T ss_pred eEEEecccCCCCC--CeEEEeCCCChhhHHHHHHHHHhhCCCEEEEeccccc-C-CccCCCCCCCCCCCCeEEcCEEEEE
Confidence 9999999998643 7999999999999999999999999999999999865 3 47999999986 4567899999998
Q ss_pred EEEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcC-----------CCCCCCEEEE
Q 023691 197 KWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNL-----------PPNFGPIVVH 265 (278)
Q Consensus 197 ~~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~-----------~~~~~PivVH 265 (278)
.++.. ..+|+.+.|.|++...+. .|.|+||||++|||+|+|.++..+++|++.+++. +...+|||||
T Consensus 176 ~~~~~-~~~~~~~~l~l~~~~~~~-~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVH 253 (323)
T PHA02746 176 LDIIE-ELSFTKTRLMITDKISDT-SREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVH 253 (323)
T ss_pred EEEEE-cCCeEEEEEEEEECCCCC-ceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEE
Confidence 87665 467999999999766554 5799999999999999999999999998877542 1123899999
Q ss_pred cCc----chhhheecC
Q 023691 266 CRY----WENWCILHN 277 (278)
Q Consensus 266 Cs~----tGtfiald~ 277 (278)
||+ ||||||||+
T Consensus 254 CsaGvGRTGtfcaid~ 269 (323)
T PHA02746 254 CSAGIGRAGTFCAIDN 269 (323)
T ss_pred cCCCCCcchhHHHHHH
Confidence 999 999999986
No 5
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=100.00 E-value=3.7e-60 Score=421.44 Aligned_cols=217 Identities=33% Similarity=0.518 Sum_probs=186.8
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCccccceeecC------C
Q 023691 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTS------S 128 (278)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINAs~V~~~------~ 128 (278)
.||++||+.|++..... ..+...+.+|+|+.||||+||+|||||||+|...+. ..+++||||||||-.. .
T Consensus 244 ~GfwEEFesLqq~~~~~---~~sr~EG~r~eN~~KNRYkNIlPfDHtRViL~d~~~-n~pgsdYINAnyi~~~~q~~~~~ 319 (600)
T KOG0790|consen 244 AGFWEEFESLQQQEVKN---LHSRLEGQRPENKGKNRYKNILPFDHTRVILQDRDP-NIPGSDYINANYIMIEFQRLCNN 319 (600)
T ss_pred cchhHHHHHhhhhhhHh---hhhhhccccchhhccccccccCcccceeeEeecCCC-CCccchhcccchhhhhhhhccCc
Confidence 58999999998654321 234567889999999999999999999999996654 4578999999998432 1
Q ss_pred CCcccceecccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccCCCCceeeeeeEEEEEEEEEecccEEE
Q 023691 129 SEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVL 208 (278)
Q Consensus 129 ~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~ 208 (278)
..-++.||||||.|.+|+.|||+||||+|+++|||.|...|.| +.||.+|||+++....||.+.|++.++.. ..+|++
T Consensus 320 ~~~kKsyIAtQGCL~nTVnDFW~MvwQENsrVIVMtTkE~ERg-K~KC~~YWPee~~~e~~G~~~v~~v~E~~-t~dY~L 397 (600)
T KOG0790|consen 320 SKPKKSYIATQGCLQNTVNDFWRMVWQENSRVIVMTTKEVERG-KSKCVKYWPEEGALEEYGVMRVRNVKESD-THDYTL 397 (600)
T ss_pred cccccceeehhhHHHHHHHHHHHHHHhccceEEEEehhhhhcc-cccccccCCcccchhhcCceEEEeccccc-ccccee
Confidence 1123589999999999999999999999999999999999987 58999999988888899999999998876 368999
Q ss_pred EEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCC---CCCCEEEEcCc----chhhheecC
Q 023691 209 RNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP---NFGPIVVHCRY----WENWCILHN 277 (278)
Q Consensus 209 r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~---~~~PivVHCs~----tGtfiald~ 277 (278)
|+|.|+....+...|+|+||||..|||||||.++..+|.|+..+++.+. ..||||||||| |||||.||+
T Consensus 398 R~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~ 473 (600)
T KOG0790|consen 398 RELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDM 473 (600)
T ss_pred hheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHH
Confidence 9999997766666789999999999999999999999999999876432 35899999999 999999984
No 6
>PHA02738 hypothetical protein; Provisional
Probab=100.00 E-value=5.6e-58 Score=412.06 Aligned_cols=206 Identities=28% Similarity=0.459 Sum_probs=173.8
Q ss_pred HHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCccccceeecCCCCcccc
Q 023691 55 REISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQ 134 (278)
Q Consensus 55 ~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINAs~V~~~~~~~~~~ 134 (278)
..+.+||+.|..... ..++..+. .|..||||.||+|||++||+|+.. .+.+||||||||+|+... ++
T Consensus 25 ~~i~~E~~~i~~~~~-----~~t~~~~~--~N~~kNR~~~v~~~d~sRV~L~~~----~~~~dYINAsyVdg~~~~--~k 91 (320)
T PHA02738 25 EVITREHQKVISEKV-----DGTFNAEK--KNRKLNRYLDAVCFDHSRVILPAE----RNRGDYINANYVDGFEYK--KK 91 (320)
T ss_pred HHHHHHHHHHhcCCC-----CcchhHHH--HhhhhCCCCCcCCCcCCEEEeCCC----CCCCCceEeEEecCCCCC--ce
Confidence 578999999864432 22333333 399999999999999999999743 246899999999998654 79
Q ss_pred eecccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccCC-CCceeeeeeEEEEEEEEEecccEEEEEeee
Q 023691 135 FIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNIGIVTKWIKTTETALVLRNLEV 213 (278)
Q Consensus 135 yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~-~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v 213 (278)
|||||+|+++|++|||+||||++|.+|||||+..|++ +.+|.+|||.+ ++.+.+|+|+|++.++.. ..+|+.|.|.|
T Consensus 92 fI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~-~~kc~~YWp~~~~~~~~~g~f~V~~~~~~~-~~~~~~~~l~l 169 (320)
T PHA02738 92 FICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENG-REKCFPYWSDVEQGSIRFGKFKITTTQVET-HPHYVKSTLLL 169 (320)
T ss_pred eEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCC-eeeccccCCCCCCCceEeccEEEEEEEEEe-cCCeEEEEEEE
Confidence 9999999999999999999999999999999999976 58999999975 667899999999988876 46899999999
Q ss_pred eecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCC--------------CCCCCEEEEcCc----chhhhee
Q 023691 214 NYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP--------------PNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 214 ~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~--------------~~~~PivVHCs~----tGtfial 275 (278)
++.. +. .|.|+||||++|||+|+|.++..+++|+..+++.. ...+|||||||+ |||||||
T Consensus 170 ~~~~-~~-~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcai 247 (320)
T PHA02738 170 TDGT-SA-TQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVV 247 (320)
T ss_pred EeCC-CC-cEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHH
Confidence 9753 33 47999999999999999999999999987775411 113799999999 9999999
Q ss_pred cC
Q 023691 276 HN 277 (278)
Q Consensus 276 d~ 277 (278)
|+
T Consensus 248 di 249 (320)
T PHA02738 248 DI 249 (320)
T ss_pred HH
Confidence 96
No 7
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-56 Score=435.86 Aligned_cols=223 Identities=28% Similarity=0.529 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCc
Q 023691 39 CSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGY 118 (278)
Q Consensus 39 ~~~~l~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dY 118 (278)
..+++++++.+..+...+|.+||+.|.... .++..+.+.+|+.||||.||++|||+||+|...+| .+.+||
T Consensus 525 v~dl~~~i~~~~~~~~~~F~~Eyesl~~~~-------~~~~~s~~~en~~KNRY~nilayD~sRV~L~~i~G--d~~sDY 595 (1087)
T KOG4228|consen 525 VADLLEHIERRKADDGYGFKQEYESLPEGQ-------FTWEHSNKKENKQKNRYENILAYDHSRVILPPIEG--DPNSDY 595 (1087)
T ss_pred HHHHHHHHHHhhcccccchHHHHhhccccC-------CccccCccccccccccCCcchhhhcceeeecccCC--Cccccc
Confidence 355677788777766689999999998551 24667778999999999999999999999998876 568999
Q ss_pred cccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccCCCCceeeeeeEEEEEE
Q 023691 119 INASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKW 198 (278)
Q Consensus 119 INAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~~~~~~~g~~~V~~~~ 198 (278)
||||||+||.. ++.|||||||+++|+.||||||||+++.+|||++.+.|.+ +.||.+||| .+...||++.|++..
T Consensus 596 INAnyIdGy~e--~n~yIaaQgP~~eTv~DFWRMVWEq~S~~IVMvTnl~E~~-r~kC~qYWP--~~t~~yGdi~V~~~~ 670 (1087)
T KOG4228|consen 596 INANYIDGYKE--PNAYIAAQGPRPETVGDFWRMVWEQKSAGIVMVTNLEEFS-RVKCAQYWP--EGTETYGDIKVTLVQ 670 (1087)
T ss_pred eeeeeeecccc--cccceeccCCcccchHHHHHHheeccCCcEEEEecccccc-cccccccCC--CCcccccccccccee
Confidence 99999999964 3899999999999999999999999999999999999965 699999999 677899999999988
Q ss_pred EEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCC-CCCCCEEEEcCc----chhhh
Q 023691 199 IKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP-PNFGPIVVHCRY----WENWC 273 (278)
Q Consensus 199 ~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~-~~~~PivVHCs~----tGtfi 273 (278)
.+. ..+|.+|+|.|...+... .|.|+||||++|||+|+|..+..+|.|+++++..+ ...||||||||| ||+||
T Consensus 671 ~~~-~a~y~iRtf~l~~~g~~~-~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi 748 (1087)
T KOG4228|consen 671 TKP-LAEYGIRTFALKKQGENP-KREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFI 748 (1087)
T ss_pred eee-eccceEEeeeccccCCCC-CceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEE
Confidence 876 478999999999776655 57999999999999999999999999999999865 345999999999 99999
Q ss_pred eecC
Q 023691 274 ILHN 277 (278)
Q Consensus 274 ald~ 277 (278)
+||.
T Consensus 749 ~iDa 752 (1087)
T KOG4228|consen 749 VIDA 752 (1087)
T ss_pred EeHH
Confidence 9995
No 8
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-56 Score=427.44 Aligned_cols=225 Identities=33% Similarity=0.595 Sum_probs=199.8
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCcc
Q 023691 40 SEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYI 119 (278)
Q Consensus 40 ~~~l~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYI 119 (278)
.+.+..+.+++..+ ++-.||++|...+ + ...|++|..++|..||||.||+|||.|||.|.+.++ ...+||
T Consensus 855 dks~~~L~~~L~~g--~v~~efE~i~rkk--p---~~~~~~a~lpeN~~KNRyrdvlPYD~tRV~L~~~~~---~nagYI 924 (1144)
T KOG0792|consen 855 DKSCIILAQGLEDG--MVFTEFEQIYRKK--P---GMACSIARLPENAPKNRYRDVLPYDDTRVELQPSKD---NNAGYI 924 (1144)
T ss_pred hhHHHHHHhhhhcC--chHHHHHHHhhhC--C---CceeeeccccccccccccCCcCCCcCceeeeccCCC---CCcccc
Confidence 45567888888874 7888999988655 2 457899999999999999999999999999998764 467999
Q ss_pred ccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccCC-CCceeeeeeEEEEEE
Q 023691 120 NASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNIGIVTKW 198 (278)
Q Consensus 120 NAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~-~~~~~~g~~~V~~~~ 198 (278)
|||+|..+.++....|||||||++.|+.|||+||||+++.+|||||..+|.| +.||++|||.. .+.++||+|.|+|..
T Consensus 925 NAS~i~ipvgg~e~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~Egg-R~KchqYWPr~~~~t~~ygrf~v~~~~ 1003 (1144)
T KOG0792|consen 925 NASHIEIPVGGIENRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEVEGG-RVKCHQYWPRLGHETMEYGRFQVTCVF 1003 (1144)
T ss_pred cceeeEeeecceeEEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehhhcC-eeccccccCCCCccceeccceEEEEEE
Confidence 9999999877777899999999999999999999999999999999999966 79999999986 678899999999999
Q ss_pred EEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCCC-CCCEEEEcCc----chhhh
Q 023691 199 IKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPN-FGPIVVHCRY----WENWC 273 (278)
Q Consensus 199 ~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~~-~~PivVHCs~----tGtfi 273 (278)
... ...|+.|.|+|.+..+++. |+|+|+||+.|||||+|+++.++|+|++.++..+.. ..|||||||| |||+|
T Consensus 1004 ~~~-t~~y~tr~m~l~~~~t~ee-R~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlI 1081 (1144)
T KOG0792|consen 1004 EQQ-TTCYVTREMTLKDLQTREE-RTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLI 1081 (1144)
T ss_pred ecc-cccEEEEeEEEeeccCCce-eeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehH
Confidence 876 5789999999999988774 699999999999999999999999999999876554 4599999999 99999
Q ss_pred eecC
Q 023691 274 ILHN 277 (278)
Q Consensus 274 ald~ 277 (278)
.+|+
T Consensus 1082 l~e~ 1085 (1144)
T KOG0792|consen 1082 LMET 1085 (1144)
T ss_pred HHHH
Confidence 8764
No 9
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=100.00 E-value=2e-54 Score=379.73 Aligned_cols=209 Identities=36% Similarity=0.655 Sum_probs=182.8
Q ss_pred HHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCccccceeecCCCCccccee
Q 023691 57 ISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFI 136 (278)
Q Consensus 57 ~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINAs~V~~~~~~~~~~yI 136 (278)
+.+||+.|...... ...+..+..++|..||||.||+|||++||+|....+ +.+||||||||+|+..+ ++||
T Consensus 2 ~~~e~~~i~~~~~~----~~~~~~~~~~~n~~kNR~~~v~~~d~~RV~l~~~~~---~~~~YInAs~v~~~~~~--~~fI 72 (258)
T smart00194 2 LEEEFEKLDRLKPD----DESCTVAARPENRDKNRYKDVLPYDHTRVKLTPPPG---EGSDYINASYIDGPNGP--KAYI 72 (258)
T ss_pred hHHHHHHhhccCCC----CccccccCCccccccCCCCCCCCCCCCEeEccCCCC---CCCCceeeeeEecCCCc--cceE
Confidence 68899999865421 246778889999999999999999999999985432 46899999999998543 7999
Q ss_pred cccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccCCCCceeeeeeEEEEEEEEEecccEEEEEeeeeec
Q 023691 137 ATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYK 216 (278)
Q Consensus 137 atQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~ 216 (278)
+||+|+++|++|||+||||++|.+||||++..|.+ ..+|.+|||.+.+.+.||.|+|++.++.. ..++++|.|+|++.
T Consensus 73 ~tQ~P~~~t~~dFW~mv~~~~~~~IVmL~~~~e~~-~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~-~~~~~~~~l~v~~~ 150 (258)
T smart00194 73 ATQGPLPSTVEDFWRMVWEEKVTTIVMLTELEEKG-REKCAQYWPEEEEPLTYGDITVTLKSVEK-VDDYTIRTLEVTNT 150 (258)
T ss_pred EeCCCchHHHHHHHHHHHhcCCCEEEEeccceeCC-EeeccccCCCCCCcceECCEEEEEEEEEe-cCCEEEEEEEEEEC
Confidence 99999999999999999999999999999999975 58999999987778899999999998876 47899999999987
Q ss_pred CCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCCC-CCCEEEEcCc----chhhheecC
Q 023691 217 ESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPN-FGPIVVHCRY----WENWCILHN 277 (278)
Q Consensus 217 ~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~~-~~PivVHCs~----tGtfiald~ 277 (278)
+.++ .+.|+||||++|||+++|.+...+++|++.+++.... .+||||||++ ||||||+++
T Consensus 151 ~~~~-~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~ 215 (258)
T smart00194 151 GCSE-TRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDI 215 (258)
T ss_pred CCCC-cEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHH
Confidence 6544 5799999999999999999999999999988875432 4899999999 999999874
No 10
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-53 Score=395.99 Aligned_cols=239 Identities=29% Similarity=0.485 Sum_probs=211.5
Q ss_pred CCCCCHHHHhHHHHHHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeec
Q 023691 28 RISLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQ 107 (278)
Q Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~ 107 (278)
.+.++...+...+..|+++++.+.+. ..|++||+-|...+..+ .++..+..++|..|||...++||||+||.|..
T Consensus 706 EpA~~nmDISTGHmiLsymedhLrnk-~rlekeWealc~YqaEp----n~r~~aq~e~~a~kNR~~a~LpyDhsrV~l~~ 780 (1004)
T KOG0793|consen 706 EPAQSNMDISTGHMILSYMEDHLRNK-NRLEKEWEALCAYQAEP----NSRFVAQREENAPKNRSLAVLPYDHSRVLLKA 780 (1004)
T ss_pred cccccccccccchhHHHHHHHHhhCc-hHHHHHHHHHHHhhcCc----chhhhhcccccccccCCCCccccccceeeecc
Confidence 44556667778889999999999987 78999999999877543 45778889999999999999999999999985
Q ss_pred cCCCCCCCCCccccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccCCCCce
Q 023691 108 CKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPR 187 (278)
Q Consensus 108 ~~~~~~~~~dYINAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~~~~~ 187 (278)
.. ..+++||||||+|...+.+. ..|||||+|++.|++|||+||||++|-+|||||++.|++ ...|..|||.+ |+.
T Consensus 781 ~~--s~s~~dYiNAS~I~DhDPR~-paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Eng-v~qc~rYWPde-Gse 855 (1004)
T KOG0793|consen 781 EN--SHSHSDYINASPIMDHDPRN-PAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENG-VRQCYRYWPDE-GSE 855 (1004)
T ss_pred cc--CccccccccccccccCCCCc-cceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcc-hhhhhhcCCCC-Ccc
Confidence 44 36789999999999887654 699999999999999999999999999999999999986 57999999986 556
Q ss_pred eeeeeEEEEEEEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHc-CCCCCCCEEEEc
Q 023691 188 EFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYN-LPPNFGPIVVHC 266 (278)
Q Consensus 188 ~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~-~~~~~~PivVHC 266 (278)
.|+-|.|.+.++..-..+|.+|.|.+++..+++ .|+|+||||.+||+.|+|.+...+++|-++|++ +++...||||||
T Consensus 856 lyhiyEV~LVSEHIWceDfLVRSFYLKNlqtse-TRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~ 934 (1004)
T KOG0793|consen 856 LYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTSE-TRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHC 934 (1004)
T ss_pred eeeeEEeeeehhhhhhhhHHHHHHHHhhccccc-ceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEc
Confidence 699999999998876788999999999988877 579999999999999999999999999999987 455568999999
Q ss_pred Cc----chhhheecC
Q 023691 267 RY----WENWCILHN 277 (278)
Q Consensus 267 s~----tGtfiald~ 277 (278)
|+ |||+|+||.
T Consensus 935 sdGaGRTG~YiliDm 949 (1004)
T KOG0793|consen 935 SDGAGRTGTYILIDM 949 (1004)
T ss_pred cCCCCccceeeeHHH
Confidence 98 999999984
No 11
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-51 Score=360.94 Aligned_cols=221 Identities=33% Similarity=0.580 Sum_probs=191.2
Q ss_pred HHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCcccc
Q 023691 42 ALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINA 121 (278)
Q Consensus 42 ~l~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINA 121 (278)
+-.++++.....+-++.+||++|..... ..++..|..++|..||||.||+|||++||+|.+..+ .+++|||||
T Consensus 83 ~e~~~~~~~~dsn~~f~eey~~lk~~g~-----~~~~~aA~l~~n~~knr~~nilpYd~Srvkl~~~~e--~~~~DYinA 155 (374)
T KOG0791|consen 83 FELHVKKMSADSNYKFSEEYNELKLVGL-----DQSKLAALLPLNRPKNRYTNILPYDNSRVKLSPVNE--EEGSDYINA 155 (374)
T ss_pred chhhhhhcccccchhhHHHHhhhhhhcc-----cchhhhhhcCCCCCcCCcCCCCCcccccceeccccc--cchhhhhhh
Confidence 3346666666666899999999975432 335668889999999999999999999999997654 578999999
Q ss_pred ceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccCCCCceeeeeeEEEEEEEEE
Q 023691 122 SLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKT 201 (278)
Q Consensus 122 s~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~ 201 (278)
|||.|+..+ +.|||||||+++|.++||+||||+++.+|||||...|.+ +.||..|||.+.....||+++|+...+..
T Consensus 156 ~~~Pg~~s~--~~fIAtQGPlp~t~~~fW~mvwq~~~~~IVmlt~~~e~~-R~kc~~ywP~~~~~~~~gdi~V~~v~e~~ 232 (374)
T KOG0791|consen 156 SYIPGYNSP--REFIATQGPLPETRDDFWKMVWQQKSHIIVMLTKCNEKG-RVKCDEYWPDEEVPVAYGDITVTMVSEES 232 (374)
T ss_pred hhcCCCCCc--ceEEEeeCCCCCChhHHHHHHHHhhcceEEEEeeccccc-chhhhhhcccccccceeccEEEEEechhh
Confidence 999998665 899999999999999999999999999999999999976 79999999998777899999999998865
Q ss_pred ecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCC-CCCCCEEEEcCc----chhhheec
Q 023691 202 TETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLP-PNFGPIVVHCRY----WENWCILH 276 (278)
Q Consensus 202 ~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~-~~~~PivVHCs~----tGtfiald 276 (278)
..++.+|.|.|... ++ .|.++||||+.|||+|+|..+..++.|++.+++.- ...+|++||||| ||||||||
T Consensus 233 -~~~w~ir~~~l~~~--~~-sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald 308 (374)
T KOG0791|consen 233 -LDEWTIREFRLNYA--GE-SRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALD 308 (374)
T ss_pred -cCCceEEEEeeecc--cc-cceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHH
Confidence 47899999999832 22 46999999999999999988999999999988743 335899999999 99999998
No 12
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=100.00 E-value=6.9e-49 Score=339.20 Aligned_cols=182 Identities=40% Similarity=0.713 Sum_probs=160.5
Q ss_pred CCCCCCCCCCCCCCeEEeeccCCCCCCCCCccccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEeccc
Q 023691 88 SKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRL 167 (278)
Q Consensus 88 ~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~ 167 (278)
+||||+|++|||++||+|.... .+.++|||||||+|+... ++||+||+|+.+|++|||+|||+++|.+||||++.
T Consensus 1 ~knR~~~~~~~d~~rV~l~~~~---~~~~~yinA~~v~~~~~~--~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~ 75 (231)
T cd00047 1 KKNRYKDILPYDHTRVKLKPDD---DEGSDYINASYIDGYNPP--KAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTEL 75 (231)
T ss_pred CCCCCCCCCCCCCCEEEccCCC---CCCCCcEEeeeEecCCCC--cceEEcCCCChhhHHHHHHHHHhcCCCEEEEcccc
Confidence 5899999999999999998532 256899999999999643 79999999999999999999999999999999999
Q ss_pred ccccccccccccccCCCCceeeeeeEEEEEEEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHH
Q 023691 168 VDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVRE 247 (278)
Q Consensus 168 ~E~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~ 247 (278)
.|.+ .++|.+|||.+.+...||.|+|++.++... .+++.|+|+|++.+.+. .+.|+||||.+|||+++|.+...+++
T Consensus 76 ~e~~-~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~-~~~~~~~l~i~~~~~~~-~~~V~~~~~~~W~d~~~p~~~~~~~~ 152 (231)
T cd00047 76 VEKG-REKCAQYWPEEEGSLTYGDITVTLVSEEKL-DDYTVRTLKLSNTGTGE-TRTVTHFQYTGWPDHGVPESPDSLLD 152 (231)
T ss_pred ccCC-CccCccCCCCCCCCeEecCEEEEEEEEEEc-CCEEEEEEEEEECCCCC-ceEEEEEeECCCCCCCccCChHHHHH
Confidence 8865 579999999866788999999999988774 78999999999876544 57999999999999999999889999
Q ss_pred HHHHHHcCC--CCCCCEEEEcCc----chhhheecC
Q 023691 248 ILKRIYNLP--PNFGPIVVHCRY----WENWCILHN 277 (278)
Q Consensus 248 ~~~~~~~~~--~~~~PivVHCs~----tGtfiald~ 277 (278)
|++.+++.. ...+||+|||++ ||+|||+++
T Consensus 153 ~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~ 188 (231)
T cd00047 153 LLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDI 188 (231)
T ss_pred HHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHH
Confidence 998887653 234899999998 999999874
No 13
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-48 Score=326.48 Aligned_cols=188 Identities=35% Similarity=0.582 Sum_probs=155.8
Q ss_pred ceeecCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCccccceeecCCCCcccceecccCCCcccHHHHHHHHHHhc
Q 023691 78 CTVALDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYH 157 (278)
Q Consensus 78 ~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~ 157 (278)
+...+.+.|..||||.||+||++|||.|...+ +..||||||||+... ..|||||||.++|+.|||.|||+..
T Consensus 45 ~~~sls~~~~~rNRYsnIvPYe~tRV~Lk~~k----~~~DYINAS~ik~~~----~~yIAtQgP~~~t~ddFW~mvw~n~ 116 (302)
T COG5599 45 DDTSLSSTNYARNRYSNIVPYEHTRVHLKYGK----SINDYINASYIKTPR----GKYIATQGPKPETIDDFWKMVWHNV 116 (302)
T ss_pred cccccCccccccccccccccccCceeeccCCC----chhhcccceeeecCC----CceEEecCCCCchHHHHHHHHHhcC
Confidence 34556788999999999999999999998542 478999999999975 3699999999999999999999998
Q ss_pred C--CeEEEecccccccccccccccccCC-CCceeeeeeEEEEEEEEEe-cccEEEEEeeeeecCCCCCceEEEEEeeCCC
Q 023691 158 C--PVIVMLTRLVDNYKMVKCGDYFQAE-DGPREFGNIGIVTKWIKTT-ETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233 (278)
Q Consensus 158 v--~~IVmLt~~~E~~~~~kc~~YwP~~-~~~~~~g~~~V~~~~~~~~-~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~W 233 (278)
. .+||||+++.|.+ ++||.+|||.. +..+.+|...+..++.+.. ...+.++.++|+... +. ++.|.||+|.+|
T Consensus 117 ~~~gvIVmLt~l~E~~-rekc~qYWp~~~~~~~~~G~~v~~~~~~e~~~d~~~~~~~f~L~~~~-~~-~k~Ihhf~y~nW 193 (302)
T COG5599 117 PNNGVIVMLTSLPEYN-REKCDQYWPLGYDDTLIIGLRVIKQKKYELFNDNIVNVHNFELTSIN-GP-PKKIHHFQYINW 193 (302)
T ss_pred CCceEEEEecChHHHh-HHHHhhhCCCCcCcceeeeeEEEEEecccccccceeeeeecccccCC-CC-ccEEEEEEecCc
Confidence 8 8999999999976 69999999964 5567788655555533322 245778899998766 33 469999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhheecC
Q 023691 234 PDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY----WENWCILHN 277 (278)
Q Consensus 234 pd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfiald~ 277 (278)
+|.+.| +...+.++++.+...+-+.+|++||||| ||||||+|+
T Consensus 194 ~D~~~p-~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ 240 (302)
T COG5599 194 VDFNVP-DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDI 240 (302)
T ss_pred cccCCc-CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHH
Confidence 999999 7777777777777654345899999999 999999985
No 14
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=100.00 E-value=3.3e-46 Score=321.90 Aligned_cols=185 Identities=35% Similarity=0.640 Sum_probs=156.9
Q ss_pred CCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCccccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEec
Q 023691 86 NLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLT 165 (278)
Q Consensus 86 n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt 165 (278)
|..|||+.||+|||++||+|.+. .+.++|||||||+++.. .++||++|+|+++|+++||+|||+++|.+||||+
T Consensus 1 n~~knR~~~~~~~d~~rv~l~~~----~~~~~yi~A~~v~~~~~--~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~ 74 (235)
T PF00102_consen 1 NREKNRSPDILPYDDSRVKLNPS----PGDSDYINASYVDGYKN--GKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLC 74 (235)
T ss_dssp GGGGSSSTTS-BBTTTEEETTTT----TTSTTEESEEEEEESSS--TEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEES
T ss_pred CCccCCCCCCCcCcceEEEecCC----CCccchhhhhhhccccc--hhhheeecccccccccceehheeeccccceeccc
Confidence 77899999999999999999532 23467999999998854 3899999999999999999999999999999999
Q ss_pred ccccccccccccccccC-CCCceeeeeeEEEEE-EEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChH
Q 023691 166 RLVDNYKMVKCGDYFQA-EDGPREFGNIGIVTK-WIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTL 243 (278)
Q Consensus 166 ~~~E~~~~~kc~~YwP~-~~~~~~~g~~~V~~~-~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~ 243 (278)
+..|.+ ..+|..|||. .++.+.+|+|+|++. .......++++|.|+|++.+.+...+.|.||||..|+++++|.+..
T Consensus 75 ~~~e~~-~~~~~~y~P~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~ 153 (235)
T PF00102_consen 75 SFDESG-DEKCDQYWPLKEGESLKFGDYTVKCKEKIEENSKHYTVRKLEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPE 153 (235)
T ss_dssp BSEETT-EESS--TSTSSSSSEEEETTEEEEEEEEEEEEESSEEEEEEEEEETTTTEEEEEEEEEEEESSSSSSSGSSSH
T ss_pred cccccc-ccccccccccccccccccccccccccccccccccceEEeeccccccccccccccccceeeeeccccccccccc
Confidence 999865 4799999995 467889999999999 6664568899999999987765334699999999999999999999
Q ss_pred HHHHHHHHHHcCC-CCCCCEEEEcCc----chhhheecC
Q 023691 244 AVREILKRIYNLP-PNFGPIVVHCRY----WENWCILHN 277 (278)
Q Consensus 244 ~ll~~~~~~~~~~-~~~~PivVHCs~----tGtfiald~ 277 (278)
.++++++.+.+.. ...+||||||++ ||+|||+++
T Consensus 154 ~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~ 192 (235)
T PF00102_consen 154 SFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDI 192 (235)
T ss_dssp HHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHH
T ss_pred hhhhhhhhccccccCCccceEeecccccccccccccchh
Confidence 9999998887644 334899999998 999999874
No 15
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=100.00 E-value=3.3e-43 Score=322.14 Aligned_cols=221 Identities=14% Similarity=0.237 Sum_probs=160.4
Q ss_pred CCCHHHHhHHHHHHHHHHHHhhcchHHHHHHHHHhHhcCCCCccccccceeecCCCCCCCCCCCCCCCCCCCeEEeeccC
Q 023691 30 SLTADQYNHCSEALSFFKEKLQNKSREISQEFARLQASRIKPSEMARGCTVALDGVNLSKNRYTDILPFDKNRVVLKQCK 109 (278)
Q Consensus 30 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~~n~~kNRy~~i~p~D~tRV~L~~~~ 109 (278)
+-+++++.+...-+..+...+. .+..|-+.+......+ ++.+-. .--..|--..||+|+|||||+|.
T Consensus 252 ~as~~~l~~a~~~~~~~~~~~~----~~~~~~~~~~ag~p~~----~~~~~~--~~~~~~~~~~~I~~~~~TrV~ls--- 318 (535)
T PRK15375 252 KASTHELTQAVKKIHVIAKELK----NVTAELEKIEAGAPMP----QTMSGP--TLGLARFAVSSIPINQQTQVKLS--- 318 (535)
T ss_pred hcCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhcCCCCc----cccCCc--cchhhHHHhcccCccccceEEcC---
Confidence 3566776555544444433332 4666666665443211 111110 01123334579999999999996
Q ss_pred CCCCCCCCccccceeecCCCCcccceecccCCCc--ccHHHHHHHHHHhcCCeEEEecccccccccccccccccCCCCce
Q 023691 110 DYRPAARGYINASLISTSSSEKVSQFIATQGPLP--HTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPR 187 (278)
Q Consensus 110 ~~~~~~~dYINAs~V~~~~~~~~~~yIatQ~Pl~--~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~~~~~ 187 (278)
+++|||||||+ +... +.+|++|.|+. +|++|||+||||++|.+|||||...|.+ ..+|.+||+ ++.
T Consensus 319 -----~g~yI~ANyI~-~~~k--~~aIa~QYP~nt~eTieDFWrMVWEn~~~VIVMLT~l~E~g-~~KC~pYW~---~s~ 386 (535)
T PRK15375 319 -----DGMPVPVNTLT-FDGK--PVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQ-AKQLPPYFR---GSY 386 (535)
T ss_pred -----CCCccccceee-ecCc--cceEeccCCCCchhhHHHHHHHHHHcCCCEEEEeeccccCc-ccccCccCC---Ccc
Confidence 37999999999 5443 68999999975 8999999999999999999999998865 579999995 567
Q ss_pred eeeeeEEEEEEEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCC---------C
Q 023691 188 EFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPP---------N 258 (278)
Q Consensus 188 ~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~---------~ 258 (278)
.||+|+|++.++.....++.+|.+.+..... +.++.|.||||++|||||+|.+...+++|++.++.... +
T Consensus 387 tYGdItVts~seesls~g~iIR~f~L~Ik~~-E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~~~n 465 (535)
T PRK15375 387 TFGEVHTNSQKVSSASQGEAIDQYNMQLSCG-EKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSD 465 (535)
T ss_pred eeccEEEEEEEEEeccCCceEEEEEEEEecC-CceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhcccccccccC
Confidence 8999999988876543457777775543333 33458999999999999999888889999888865421 1
Q ss_pred CCCEEEEcCc----chhhheec
Q 023691 259 FGPIVVHCRY----WENWCILH 276 (278)
Q Consensus 259 ~~PivVHCs~----tGtfiald 276 (278)
.+++|||||| ||||||++
T Consensus 466 k~~PVVHCSAGVGRTGTFIAi~ 487 (535)
T PRK15375 466 KHLPMIHCLGGVGRTGTMAAAL 487 (535)
T ss_pred CCCceEEcCCCCchHHHHHHHH
Confidence 1344899999 99999986
No 16
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4e-44 Score=349.45 Aligned_cols=237 Identities=29% Similarity=0.468 Sum_probs=190.2
Q ss_pred CCCCCCCHHHHhHHHHHHHHH-------------HH----Hhh----cchHHHHHHHHHhHhcCCCCccccccceeecCC
Q 023691 26 PPRISLTADQYNHCSEALSFF-------------KE----KLQ----NKSREISQEFARLQASRIKPSEMARGCTVALDG 84 (278)
Q Consensus 26 ~~~~~~~~~~~~~~~~~l~~~-------------~~----~~~----~~~~~~~~Ef~~l~~~~~~~~~~~~~~~~a~~~ 84 (278)
...+..|.+|+-.+.++|... .. ... ....+|++||+.|........ ....|.++
T Consensus 776 R~~mVQt~eQYiFi~~AllE~~~~G~T~i~~~~~~~~~~~l~~~~p~~~~t~le~EF~~L~~~~~~~~----~~~~~~l~ 851 (1087)
T KOG4228|consen 776 RNNMVQTEEQYIFIHEALLEACLCGDTEVPASTLAPYSQKLKRIDPPENKTGLEEEFKTLNSCKPRTR----MMICGNLP 851 (1087)
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHhccCCCCCCCcchHHHHHHHhhccccch----hhhccccc
Confidence 467788899988887776421 11 111 112589999999987654332 12238999
Q ss_pred CCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCccccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeEEEe
Q 023691 85 VNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVIVML 164 (278)
Q Consensus 85 ~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmL 164 (278)
+|+.|||+.+|+|||++||.|.+..| .++||||||||+||.. +..|||||+||.+|++|||||||+++|.+||||
T Consensus 852 ~N~~KNR~~~i~P~d~~rv~L~~~~G---~~sdYINAs~idgy~~--~~~fivtq~PL~~T~~DFWrmi~d~~~tsiVmL 926 (1087)
T KOG4228|consen 852 ENKSKNRQVNILPYDRNRVILIPTHG---ESSDYINASFIDGYRQ--PKAFIVTQGPLAETVEDFWRMIWDQNVTSIVML 926 (1087)
T ss_pred hhcccccccccCCchhcccceeccCC---CcccccchhhhcccCC--cceEEEecCCcccchHHHHHHhhccceeEEEEe
Confidence 99999999999999999999998876 4899999999999964 479999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCceeeeeeEEEEEEEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCC-hH
Q 023691 165 TRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRD-TL 243 (278)
Q Consensus 165 t~~~E~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~-~~ 243 (278)
+++.+. ++|.+|||. .+...||.+.|....... ...++.|.|.|++...+. .|+|.||||++||..+.|.. ..
T Consensus 927 ~~l~~~---~~C~qyw~~-~g~~~yg~i~Ve~~~~~~-~~~~t~r~f~i~n~~~~~-~r~v~qfq~~~WP~~~~~p~~~~ 1000 (1087)
T KOG4228|consen 927 TELKHP---EKCPQYWPP-EGSQRYGPIEVEDMNEHI-NPQYTAREFGVTNEREKQ-SRTVRQFQFTGWPEYGKPPQSKG 1000 (1087)
T ss_pred cccCcc---cccccccCC-cCceecCcEEEEeccccc-chhhhhhhheeeeccccC-ceEEEEEEecCCcccCcCCCCcc
Confidence 999873 799999998 577789999999988776 467899999999887554 57999999999999986654 44
Q ss_pred HHHHHHHHHHcC--CCCCCCEEEEcCc----chhhheecC
Q 023691 244 AVREILKRIYNL--PPNFGPIVVHCRY----WENWCILHN 277 (278)
Q Consensus 244 ~ll~~~~~~~~~--~~~~~PivVHCs~----tGtfiald~ 277 (278)
.+..+...+.++ ....+|++|||++ +||||||.+
T Consensus 1001 ~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~ 1040 (1087)
T KOG4228|consen 1001 PISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISI 1040 (1087)
T ss_pred hhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHH
Confidence 444444444332 2225899999998 999999864
No 17
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.2e-39 Score=304.13 Aligned_cols=187 Identities=30% Similarity=0.459 Sum_probs=143.7
Q ss_pred cCCCCCCCCCCCCCCCCCCCeEEeeccCCCCCCCCCccccceeecCCCCcccceecccCCCcccHHHHHHHHHHhcCCeE
Q 023691 82 LDGVNLSKNRYTDILPFDKNRVVLKQCKDYRPAARGYINASLISTSSSEKVSQFIATQGPLPHTYEDFWEMVIQYHCPVI 161 (278)
Q Consensus 82 ~~~~n~~kNRy~~i~p~D~tRV~L~~~~~~~~~~~dYINAs~V~~~~~~~~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~I 161 (278)
....|..||||.||.|||++||+|... ...||||||||+++.. . +.||+||||++.|.+|||+|||++++..|
T Consensus 123 ~~~~~~~kNr~~dv~~~d~~rV~l~~~-----~~~dyI~A~~v~~~~~-~-~~~I~tQ~Pl~~t~~dFW~mv~~~k~~~I 195 (415)
T KOG0789|consen 123 AFLKNMDKNRYSDVQCLDHTRVKLKPP-----QDKDYIHASKIYFPKG-P-RTAILTQAPLSKTTEDFWRMVFEEKVESV 195 (415)
T ss_pred hhhccccccccCCcCcccCCeeecCCC-----CCcccchhhccCCcCC-C-cCceecCCCCcccHHHHHHHHHHcCCCEE
Confidence 345688899999999999999999742 1689999999999752 2 68999999999998999999999999999
Q ss_pred EEecccccccccccccccccCCC-CceeeeeeEEEEEEEEEec-----ccEEEEEeeeeecCCCCCceEEEEEeeCCCCC
Q 023691 162 VMLTRLVDNYKMVKCGDYFQAED-GPREFGNIGIVTKWIKTTE-----TALVLRNLEVNYKESEEPPMSVLHIQYPEWPD 235 (278)
Q Consensus 162 VmLt~~~E~~~~~kc~~YwP~~~-~~~~~g~~~V~~~~~~~~~-----~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd 235 (278)
||||...|.+ +.+|.+|||.+. ....|+.+..++....... ..+....+.+...+.....+.|.||||++|||
T Consensus 196 vml~~~~E~~-~~kc~~Y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~WPd 274 (415)
T KOG0789|consen 196 VLLCSDEELG-AAECASYFPSKRGVKLTFLEFGKKFVENRKVEMKQQDQTSTVGLLLLVLPEGLEISSSVVHYHYINWPD 274 (415)
T ss_pred EEecchhhcc-HHHHhhcCcccCCCeeeecccceeEEEeeeeecccccccceeeEEEeecCCCccccceEEEEeeCCCcc
Confidence 9999999976 689999999875 3456776644433322111 22333332232222222235899999999999
Q ss_pred CCCCCChHHHHHHHHH-HHcCCCCCCCEEEEcCc----chhhheec
Q 023691 236 HGVPRDTLAVREILKR-IYNLPPNFGPIVVHCRY----WENWCILH 276 (278)
Q Consensus 236 ~gvP~~~~~ll~~~~~-~~~~~~~~~PivVHCs~----tGtfiald 276 (278)
+|+|.+...++.+++. +....+..+|++||||+ ||||+++|
T Consensus 275 ~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 275 HGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred ccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHH
Confidence 9999999999999874 22233345899999999 99999987
No 18
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.16 E-value=2.6e-11 Score=90.87 Aligned_cols=53 Identities=36% Similarity=0.689 Sum_probs=45.0
Q ss_pred EEEEeeCCCCCCCCCCChHHHHHHHHHHHcCC---CCCCCEEEEcCc----chhhheecC
Q 023691 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP---PNFGPIVVHCRY----WENWCILHN 277 (278)
Q Consensus 225 V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~---~~~~PivVHCs~----tGtfiald~ 277 (278)
+.||||.+|||+++|.....++++++.++... ...+||+|||++ ||+||++++
T Consensus 2 ~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~ 61 (105)
T smart00012 2 VKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDI 61 (105)
T ss_pred eEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHH
Confidence 78999999999999998889999988776532 224899999998 999998763
No 19
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.16 E-value=2.6e-11 Score=90.87 Aligned_cols=53 Identities=36% Similarity=0.689 Sum_probs=45.0
Q ss_pred EEEEeeCCCCCCCCCCChHHHHHHHHHHHcCC---CCCCCEEEEcCc----chhhheecC
Q 023691 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLP---PNFGPIVVHCRY----WENWCILHN 277 (278)
Q Consensus 225 V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~---~~~~PivVHCs~----tGtfiald~ 277 (278)
+.||||.+|||+++|.....++++++.++... ...+||+|||++ ||+||++++
T Consensus 2 ~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~ 61 (105)
T smart00404 2 VKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDI 61 (105)
T ss_pred eEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHH
Confidence 78999999999999998889999988776532 224899999998 999998763
No 20
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=98.30 E-value=6.2e-07 Score=73.49 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=31.0
Q ss_pred cceecccCCCcccHHHHHHHHHHhcCCeEEEec
Q 023691 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLT 165 (278)
Q Consensus 133 ~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt 165 (278)
.+||++-+|++++..+|...+-+.++..||.++
T Consensus 16 ~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~ 48 (166)
T PTZ00242 16 FKFLILDAPSPSNLPLYIKELQRYNVTHLVRVC 48 (166)
T ss_pred eEEEEecCCCcccHHHHHHHHHhCCCeEEEecC
Confidence 489999999999999999999999999999885
No 21
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=97.81 E-value=4.9e-05 Score=65.20 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=63.4
Q ss_pred cceecccCCCcccHHHHHHHHHHhcCCeEEEecccccccccccccccccCCCCceeeeeeEEEEEEEEEecccEEEEEee
Q 023691 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPREFGNIGIVTKWIKTTETALVLRNLE 212 (278)
Q Consensus 133 ~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~~~~~~~g~~~V~~~~~~~~~~~~~~r~l~ 212 (278)
.+||++-+|+..++.+|..-....++..||.+|.. .| +.+ .+
T Consensus 92 ~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~----------~Y-d~~---------------------~~------ 133 (241)
T PTZ00393 92 IKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCER----------TY-NDG---------------------EI------ 133 (241)
T ss_pred eeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCC----------CC-CHH---------------------HH------
Confidence 58999999999999999999999999999998642 12 110 00
Q ss_pred eeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 213 VNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 213 v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
.. ..|.+++ ..|||+++|. ...+.+++..+.+.-...++|+|||.+ |||++|.
T Consensus 134 ---~~-----~GI~~~~-lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~Aa 190 (241)
T PTZ00393 134 ---TS-----AGINVHE-LIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASI 190 (241)
T ss_pred ---HH-----cCCeEEE-eecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHH
Confidence 00 0233333 4689999985 344444443333221233789999999 9999875
No 22
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=97.04 E-value=0.00067 Score=53.25 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=34.3
Q ss_pred EEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 224 SVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 224 ~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
...|+.+.+|++...+.....+++++....+ ..+||+|||.+ ||+||+.
T Consensus 49 ~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rs~~~~~~ 101 (139)
T cd00127 49 NYLYVPILDLPSQDISKYFDEAVDFIDDARE---KGGKVLVHCLAGVSRSATLVIA 101 (139)
T ss_pred eEEEEEceeCCCCChHHHHHHHHHHHHHHHh---cCCcEEEECCCCCchhHHHHHH
Confidence 6778888888865554444455666665543 23799999998 9999864
No 23
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.89 E-value=0.0082 Score=49.77 Aligned_cols=42 Identities=21% Similarity=0.157 Sum_probs=28.7
Q ss_pred CCCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhe
Q 023691 232 EWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY----WENWCI 274 (278)
Q Consensus 232 ~Wpd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfia 274 (278)
.++|+.+|+ ...+.+++..+.......+.|+|||.+ |||++|
T Consensus 79 ~~~D~~~p~-~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtvia 124 (180)
T COG2453 79 PILDGTVPD-LEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIA 124 (180)
T ss_pred eecCCCCCc-HHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHH
Confidence 678999984 355555554444332233589999998 999998
No 24
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=95.33 E-value=0.013 Score=47.92 Aligned_cols=50 Identities=24% Similarity=0.243 Sum_probs=25.7
Q ss_pred EEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 224 SVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 224 ~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
.+.|+....|.+..++.+...+.+.++.+.... +.||+|||.. ||+.||+
T Consensus 58 ~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~--n~PvLiHC~~G~~rTG~vvg~ 111 (164)
T PF03162_consen 58 KLIHIPMSSSKDPWVPISEEQVAEALEIILDPR--NYPVLIHCNHGKDRTGLVVGC 111 (164)
T ss_dssp EEEE-------GGG----HHHHHHHHHHHH-GG--G-SEEEE-SSSSSHHHHHHHH
T ss_pred eEEEeccccccCccccCCHHHHHHHHHHHhCCC--CCCEEEEeCCCCcchhhHHHH
Confidence 455566666655456666777777777654432 3799999976 9999875
No 25
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=95.26 E-value=0.024 Score=47.53 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=36.3
Q ss_pred EEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 225 V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
+.|+.+ --+|.+.| ++..+.+|++.+..... .|-|.|||-| |||+||.
T Consensus 116 i~h~~l-~f~Dg~tP-~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc 167 (225)
T KOG1720|consen 116 IDHHDL-FFADGSTP-TDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIAC 167 (225)
T ss_pred ceeeee-ecCCCCCC-CHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHH
Confidence 555554 36788888 67788888887766544 4889999998 9999984
No 26
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=95.25 E-value=0.026 Score=44.23 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=19.8
Q ss_pred HHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 244 AVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 244 ~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
.+...++.+.......+||+|||.+ ||++++.
T Consensus 63 ~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~ 98 (138)
T smart00195 63 YFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIA 98 (138)
T ss_pred HHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHH
Confidence 3333333333322334799999998 9998764
No 27
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=94.36 E-value=0.032 Score=45.37 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=48.3
Q ss_pred CCCccccceeecCCCCcccceecccCCCc------ccHHHHHHHHHHhcCCeEEEecccccccccccccccccCCCCcee
Q 023691 115 ARGYINASLISTSSSEKVSQFIATQGPLP------HTYEDFWEMVIQYHCPVIVMLTRLVDNYKMVKCGDYFQAEDGPRE 188 (278)
Q Consensus 115 ~~dYINAs~V~~~~~~~~~~yIatQ~Pl~------~T~~dFW~mV~e~~v~~IVmLt~~~E~~~~~kc~~YwP~~~~~~~ 188 (278)
..+.|+.+|++--..+.....-+|-+|-. .....=-.-+.++.+..||.|+...|... .+ +|.
T Consensus 23 ~~~P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~-l~----Vp~------ 91 (168)
T PF05706_consen 23 EQTPIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELAR-LG----VPD------ 91 (168)
T ss_dssp BTS----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHH-TT-----TT------
T ss_pred cCCceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHH-cC----Ccc------
Confidence 34677777776432221123445555531 12222234566788999999988777421 00 121
Q ss_pred eeeeEEEEEEEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc
Q 023691 189 FGNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY 268 (278)
Q Consensus 189 ~g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~ 268 (278)
++. .. .. +-+..+|| -.+|.++| +...+.+++..+...=.+...|+|||.+
T Consensus 92 L~~---------------------~~-~~-----~Gi~~~h~-PI~D~~aP-d~~~~~~i~~eL~~~L~~g~~V~vHC~G 142 (168)
T PF05706_consen 92 LGE---------------------AA-QA-----RGIAWHHL-PIPDGSAP-DFAAAWQILEELAARLENGRKVLVHCRG 142 (168)
T ss_dssp HHH---------------------HH-HH-----TT-EEEE-----TTS----HHHHHHHHHHHHHHHHTT--EEEE-SS
T ss_pred HHH---------------------HH-HH-----cCCEEEec-CccCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 100 00 00 12333455 58899999 4555555555544321123679999998
Q ss_pred ----chhhhe
Q 023691 269 ----WENWCI 274 (278)
Q Consensus 269 ----tGtfia 274 (278)
||+++|
T Consensus 143 GlGRtGlvAA 152 (168)
T PF05706_consen 143 GLGRTGLVAA 152 (168)
T ss_dssp SSSHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 999876
No 28
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=93.55 E-value=0.063 Score=43.59 Aligned_cols=33 Identities=12% Similarity=0.025 Sum_probs=19.7
Q ss_pred ecccCCCcccHHHHHHHHHHhcCCeEEEeccccc
Q 023691 136 IATQGPLPHTYEDFWEMVIQYHCPVIVMLTRLVD 169 (278)
Q Consensus 136 IatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~~E 169 (278)
+=.-.|..-|.+|.+.+. +.+++.||=|-...|
T Consensus 22 yRS~~l~~lt~~d~~~L~-~lgI~tIiDLRs~~E 54 (164)
T PF13350_consen 22 YRSGNLSNLTEADLERLR-ELGIRTIIDLRSPTE 54 (164)
T ss_dssp EEES--TT--HHHHHHHH-HTT--EEEE-S-HHH
T ss_pred EecCCcCcCCHHHHHHHH-hCCCCEEEECCCccc
Confidence 334455566888888888 999999999988777
No 29
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=92.68 E-value=0.54 Score=36.80 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=32.4
Q ss_pred cceecccCCCcccHHHHHHHHHHhcCCeEEEeccc
Q 023691 133 SQFIATQGPLPHTYEDFWEMVIQYHCPVIVMLTRL 167 (278)
Q Consensus 133 ~~yIatQ~Pl~~T~~dFW~mV~e~~v~~IVmLt~~ 167 (278)
.+|++|-.|...|+..|-.-+-.+++..+|-+|..
T Consensus 17 MrFLIThnPtnaTln~fieELkKygvttvVRVCe~ 51 (173)
T KOG2836|consen 17 MRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEP 51 (173)
T ss_pred eEEEEecCCCchhHHHHHHHHHhcCCeEEEEeccc
Confidence 68999999999999999999999999999998754
No 30
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=89.13 E-value=0.11 Score=40.20 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 242 TLAVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 242 ~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
...+.+++....+ ..++|+|||.+ ||++++.
T Consensus 59 ~~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~a 93 (133)
T PF00782_consen 59 LDQAVEFIENAIS---EGGKVLVHCKAGLSRSGAVAAA 93 (133)
T ss_dssp HHHHHHHHHHHHH---TTSEEEEEESSSSSHHHHHHHH
T ss_pred HHHHHHhhhhhhc---ccceeEEEeCCCcccchHHHHH
Confidence 3455666665543 23789999998 8988763
No 31
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=88.49 E-value=0.48 Score=37.95 Aligned_cols=41 Identities=20% Similarity=0.384 Sum_probs=25.0
Q ss_pred CCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 233 WPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 233 Wpd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
.+|+..| ++..+-.|+..++..+. ...+++||.+ |.||.++
T Consensus 100 itd~~~P-~~~~iD~fi~~v~~~p~-~~~l~fhC~~G~GRTTt~Mv~ 144 (149)
T PF14566_consen 100 ITDHQAP-DPEDIDAFINFVKSLPK-DTWLHFHCQAGRGRTTTFMVM 144 (149)
T ss_dssp E-TTS----HHHHHHHHHHHHTS-T-T-EEEEE-SSSSHHHHHHHHH
T ss_pred CCCcCCC-CHHHHHHHHHHHHhCCC-CCeEEEECCCCCCHHHHHHHH
Confidence 4466666 56677777777777744 4789999998 7777654
No 32
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=84.92 E-value=1.1 Score=33.89 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=22.5
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCc---chhhhee
Q 023691 241 DTLAVREILKRIYNLPPNFGPIVVHCRY---WENWCIL 275 (278)
Q Consensus 241 ~~~~ll~~~~~~~~~~~~~~PivVHCs~---tGtfial 275 (278)
+...+..|.+.+.+. .+||++||.. ++++.+|
T Consensus 71 ~~~~v~~f~~~l~~~---~~Pvl~hC~sG~Ra~~l~~l 105 (110)
T PF04273_consen 71 TEEDVEAFADALESL---PKPVLAHCRSGTRASALWAL 105 (110)
T ss_dssp -HHHHHHHHHHHHTT---TTSEEEE-SCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC---CCCEEEECCCChhHHHHHHH
Confidence 567777777777764 2799999987 8877765
No 33
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=84.31 E-value=2.3 Score=33.35 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCc---chhhhee
Q 023691 241 DTLAVREILKRIYNLPPNFGPIVVHCRY---WENWCIL 275 (278)
Q Consensus 241 ~~~~ll~~~~~~~~~~~~~~PivVHCs~---tGtfial 275 (278)
+...+..|.+.+... .+||++||.+ ||++.++
T Consensus 71 ~~~~v~~f~~~~~~~---~~pvL~HC~sG~Rt~~l~al 105 (135)
T TIGR01244 71 TPDDVETFRAAIGAA---EGPVLAYCRSGTRSSLLWGF 105 (135)
T ss_pred CHHHHHHHHHHHHhC---CCCEEEEcCCChHHHHHHHH
Confidence 444555555555432 3899999988 8888765
No 34
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=82.69 E-value=2.3 Score=34.11 Aligned_cols=36 Identities=28% Similarity=0.530 Sum_probs=26.6
Q ss_pred CCCCCC-CCCChHHHHHHHHHHHcCCCCCCCEEEEcCc
Q 023691 232 EWPDHG-VPRDTLAVREILKRIYNLPPNFGPIVVHCRY 268 (278)
Q Consensus 232 ~Wpd~g-vP~~~~~ll~~~~~~~~~~~~~~PivVHCs~ 268 (278)
.-||.| .-.....+..++..+..++.. .|++|||.+
T Consensus 66 ~~~~~g~~ap~e~Hv~~i~DF~~~wp~~-apllIHC~a 102 (172)
T COG5350 66 AEPDDGWIAPGEAHVRAIIDFADEWPRF-APLLIHCYA 102 (172)
T ss_pred cCCCccccCCCHHHHHHHHHHHhcCccc-cceeeeecc
Confidence 344444 444667788888888888766 899999987
No 35
>PRK12361 hypothetical protein; Provisional
Probab=81.96 E-value=1.5 Score=42.80 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=29.0
Q ss_pred EEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhe
Q 023691 225 VLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY----WENWCI 274 (278)
Q Consensus 225 V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfia 274 (278)
+.++++.-| |...| +...+.+.++.+.+.....++|+|||.+ |+++++
T Consensus 143 i~yl~iPi~-D~~~p-~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ 194 (547)
T PRK12361 143 IDYLNIPIL-DHSVP-TLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLA 194 (547)
T ss_pred ceEEEeecC-CCCCC-cHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHH
Confidence 344444333 66666 5555555555554433334789999998 888765
No 36
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=81.16 E-value=1.3 Score=41.75 Aligned_cols=43 Identities=21% Similarity=0.182 Sum_probs=28.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHcCC--CCCCCEEEEcCc----chhhhe
Q 023691 231 PEWPDHGVPRDTLAVREILKRIYNLP--PNFGPIVVHCRY----WENWCI 274 (278)
Q Consensus 231 ~~Wpd~gvP~~~~~ll~~~~~~~~~~--~~~~PivVHCs~----tGtfia 274 (278)
.+|+|+++| +.+.|..+.+.+..|- ....-+||||-+ ||+.|+
T Consensus 78 ~~~~Dh~~P-~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~ic 126 (434)
T KOG2283|consen 78 FGFDDHNPP-PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMIC 126 (434)
T ss_pred cCCCCCCCC-cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEe
Confidence 489999999 5555555555544421 122579999987 777653
No 37
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=79.94 E-value=1.7 Score=37.98 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 243 LAVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 243 ~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
+.+..++..+.... ++|+++||.+ ||..+|+
T Consensus 122 e~~~~~~~l~~~~e--~~PvL~HC~~GkdRTGl~~al 156 (249)
T COG2365 122 ERLVELLQLLADAE--NGPVLIHCTAGKDRTGLVAAL 156 (249)
T ss_pred HHHHHHHHHHhhcc--cCCEEEecCCCCcchHHHHHH
Confidence 34444444433322 4899999998 9999876
No 38
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.54 E-value=5.7 Score=38.66 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=13.4
Q ss_pred CCCCCEEEEcCc----chhhhee
Q 023691 257 PNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 257 ~~~~PivVHCs~----tGtfial 275 (278)
.+..||+||||+ |..+.+|
T Consensus 372 ~~~~sVlVHCSDGWDRT~QlvsL 394 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVSL 394 (717)
T ss_pred cCCceEEEEcCCCccchHHHHHH
Confidence 345799999999 6555443
No 39
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=58.83 E-value=18 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=14.4
Q ss_pred HHHHHHHHHHcCC-CCCCCEEEEcCc
Q 023691 244 AVREILKRIYNLP-PNFGPIVVHCRY 268 (278)
Q Consensus 244 ~ll~~~~~~~~~~-~~~~PivVHCs~ 268 (278)
.+-++.+.+.+.. ...+.+|||||+
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSG 105 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSG 105 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-S
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCC
Confidence 5566666666541 123689999998
No 40
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=54.35 E-value=35 Score=25.59 Aligned_cols=42 Identities=19% Similarity=0.397 Sum_probs=28.2
Q ss_pred eeeEEEEEEEEEecccEEEEEeeeeecCCCCCceEEEEEeeCCC
Q 023691 190 GNIGIVTKWIKTTETALVLRNLEVNYKESEEPPMSVLHIQYPEW 233 (278)
Q Consensus 190 g~~~V~~~~~~~~~~~~~~r~l~v~~~~~~~~~r~V~h~~y~~W 233 (278)
+++.+++.-.........++.|+|+|.+.. .|.+..+-|..|
T Consensus 48 ~gi~~~~~v~V~~~~~vEi~~l~l~N~~~~--~r~L~vtsy~E~ 89 (110)
T PF06165_consen 48 GGIETELTVFVPPDDPVEIRRLRLTNTSNR--PRRLSVTSYAEW 89 (110)
T ss_dssp TTEEEEEEEE--TTSSEEEEEEEEEE-SSS---EEEEEEEEEEE
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEEEECcCC--cEEEEEEEEEEE
Confidence 455555544444456799999999987654 468999999887
No 41
>PLN02727 NAD kinase
Probab=51.37 E-value=18 Score=37.39 Aligned_cols=33 Identities=12% Similarity=0.082 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 241 DTLAVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 241 ~~~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
+.+.+.+|.+.++... ..||++||-. ||++.|.
T Consensus 325 t~EqVe~fa~~l~~sl--pkPVLvHCKSGarRAGamvA~ 361 (986)
T PLN02727 325 SAEQVEKFASLVSDSS--KKPIYLHSKEGVWRTSAMVSR 361 (986)
T ss_pred CHHHHHHHHHHHHhhc--CCCEEEECCCCCchHHHHHHH
Confidence 6678888887774322 3799999976 9998875
No 42
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=50.84 E-value=25 Score=21.49 Aligned_cols=23 Identities=17% Similarity=0.486 Sum_probs=18.9
Q ss_pred EEeeCCCCCCCCCCChHHHHHHH
Q 023691 227 HIQYPEWPDHGVPRDTLAVREIL 249 (278)
Q Consensus 227 h~~y~~Wpd~gvP~~~~~ll~~~ 249 (278)
+|++.+||--|+|.-.+++++-+
T Consensus 2 ~~~~AG~~~~G~~ql~ESLLdrI 24 (45)
T PF02061_consen 2 QYAIAGWPRMGCPQLSESLLDRI 24 (45)
T ss_pred eeeecCccccCCchhhHHHHHHH
Confidence 58899999999997667777665
No 43
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=46.52 E-value=42 Score=29.05 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhee
Q 023691 243 LAVREILKRIYNLPPNFGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 243 ~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfial 275 (278)
+.+...++.+-. ..+-|++|||.- ||++|+.
T Consensus 134 ~~i~~~l~~lld--~~N~P~Lihc~rGkhRtg~lVgc 168 (249)
T KOG1572|consen 134 HSIRKALKVLLD--KRNYPILIHCKRGKHRTGCLVGC 168 (249)
T ss_pred HHHHHHHHHHhc--ccCCceEEecCCCCcchhhhHHH
Confidence 445555554332 233799999997 9998863
No 44
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.37 E-value=77 Score=26.20 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=20.0
Q ss_pred CCCCCCC--CCCCCCCCCCCcCCCCCCCCCCCCHHHHhHHH
Q 023691 2 AASSAGN--HSTPHNTKPFEFSAVDFPPRISLTADQYNHCS 40 (278)
Q Consensus 2 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (278)
+|+|+|+ |++|+|++--..++ ..+.+.|+-+..++
T Consensus 95 ~a~s~p~sa~a~plps~~p~~s~----~ip~vDp~VL~DlE 131 (222)
T KOG4514|consen 95 VAASAPSSAHATPLPSMGPIQSR----NIPEVDPSVLSDLE 131 (222)
T ss_pred cCCCCCCccccCCCCCCCCCCCC----CCCCCChHHHHHHH
Confidence 4555554 67788876655554 44455666554443
No 45
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=42.50 E-value=61 Score=26.30 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=24.9
Q ss_pred EEEEEeeCCCCCCCCCCChHHHHHHHHHHHcCCCCCCCEEEEcCc
Q 023691 224 SVLHIQYPEWPDHGVPRDTLAVREILKRIYNLPPNFGPIVVHCRY 268 (278)
Q Consensus 224 ~V~h~~y~~Wpd~gvP~~~~~ll~~~~~~~~~~~~~~PivVHCs~ 268 (278)
.|.||+...=.-.|.| +.+.+-+-++.+.+..+-..-+-|||-|
T Consensus 75 giE~L~i~T~D~~~~P-s~~~i~~aVeFi~k~asLGktvYVHCKA 118 (183)
T KOG1719|consen 75 GIEFLVIPTRDYTGAP-SLENIQKAVEFIHKNASLGKTVYVHCKA 118 (183)
T ss_pred cceeEEeccccccCCC-CHHHHHHHHHHHHhccccCCeEEEEecC
Confidence 3444444333234566 5556655555555544333579999998
No 46
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=38.70 E-value=7.6 Score=37.48 Aligned_cols=30 Identities=30% Similarity=0.547 Sum_probs=25.4
Q ss_pred ccceecccCCCcccHHHHHHHHHHhcCCeE
Q 023691 132 VSQFIATQGPLPHTYEDFWEMVIQYHCPVI 161 (278)
Q Consensus 132 ~~~yIatQ~Pl~~T~~dFW~mV~e~~v~~I 161 (278)
.+.||++|||..+.+.-=|.-||.-|=++|
T Consensus 474 LkqfIl~QG~Sk~v~~meWdkiWAfNKKvI 503 (712)
T KOG1147|consen 474 LKQFILAQGPSKNVVTMEWDKIWAFNKKVI 503 (712)
T ss_pred HHHHHHHhCCccceeeeehHhhhhhccccc
Confidence 368999999999999999999998875433
No 47
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=26.56 E-value=66 Score=26.47 Aligned_cols=48 Identities=25% Similarity=0.409 Sum_probs=27.5
Q ss_pred EEEEEeeCCCCCCCCCCCh-----HHHHHHHHHHHcCCCCCCCEEEEcCc----chhhhe
Q 023691 224 SVLHIQYPEWPDHGVPRDT-----LAVREILKRIYNLPPNFGPIVVHCRY----WENWCI 274 (278)
Q Consensus 224 ~V~h~~y~~Wpd~gvP~~~-----~~ll~~~~~~~~~~~~~~PivVHCs~----tGtfia 274 (278)
....+||..=|-...|... +.+.+.++.+.. ..|-++|||-| +.++|.
T Consensus 57 ~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~---~gG~TLvHC~AGVSRSAsLCl 113 (198)
T KOG1718|consen 57 SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIM---RGGKTLVHCVAGVSRSASLCL 113 (198)
T ss_pred cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHh---cCCcEEEEEccccchhHHHHH
Confidence 4445556555444455432 234444554443 34789999998 777663
No 48
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=24.29 E-value=72 Score=28.25 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=13.8
Q ss_pred HHHHHHHHHcCCCCCCCEEEEcCc
Q 023691 245 VREILKRIYNLPPNFGPIVVHCRY 268 (278)
Q Consensus 245 ll~~~~~~~~~~~~~~PivVHCs~ 268 (278)
.+.|+...+.. ..-++|||-+
T Consensus 240 AIsfIdeArsk---~cgvLVHCla 260 (343)
T KOG1717|consen 240 AISFIDEARSK---NCGVLVHCLA 260 (343)
T ss_pred HHHHHHHhhcc---CCcEEEeeec
Confidence 35555555543 3459999998
No 49
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=23.00 E-value=76 Score=27.62 Aligned_cols=13 Identities=38% Similarity=0.511 Sum_probs=10.6
Q ss_pred CCEEEEcCc---chhh
Q 023691 260 GPIVVHCRY---WENW 272 (278)
Q Consensus 260 ~PivVHCs~---tGtf 272 (278)
+-||+|||+ +|.|
T Consensus 92 g~iv~HcSga~~~~il 107 (289)
T COG5495 92 GTIVAHCSGANGSGIL 107 (289)
T ss_pred CeEEEEccCCCchhhh
Confidence 689999998 5555
No 50
>PF11502 BCL9: B-cell lymphoma 9 protein; InterPro: IPR024670 The Wnt pathway plays a role in embryonic development, stem cell growth and tumorigenesis. B-cell lymphoma 9 (BCL9) associates with beta-catenin and Tcf in the nucleus when the Wnt pathway is stimulated leading to the transactivation of Wnt target genes []. This entry represents a beta-catenin binding domain found in BCL9 and BCL9 homologues.; PDB: 3SL9_F 2GL7_C.
Probab=21.97 E-value=1.3e+02 Score=18.35 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=14.4
Q ss_pred CCHHHHhHHHHHHHHHHHHh
Q 023691 31 LTADQYNHCSEALSFFKEKL 50 (278)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~~ 50 (278)
||++|+.+-++.|+.+++.-
T Consensus 2 LtpeQ~qHRE~qL~tlr~mq 21 (40)
T PF11502_consen 2 LTPEQRQHRERQLATLRDMQ 21 (40)
T ss_dssp --HHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH
Confidence 78999998888888776544
No 51
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification]
Probab=21.50 E-value=66 Score=27.55 Aligned_cols=21 Identities=48% Similarity=0.779 Sum_probs=18.5
Q ss_pred ecccCCCcccHHHHHHHHHHh
Q 023691 136 IATQGPLPHTYEDFWEMVIQY 156 (278)
Q Consensus 136 IatQ~Pl~~T~~dFW~mV~e~ 156 (278)
|+||.|+++..+||++.+.+.
T Consensus 176 ilt~~plP~~~EdFy~~l~~y 196 (299)
T COG5228 176 ILTNDPLPNNKEDFYWWLHQY 196 (299)
T ss_pred HHhcCCCCccHHHHHHHHHHH
Confidence 689999999999999987653
No 52
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=20.19 E-value=50 Score=30.37 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=12.0
Q ss_pred CCCEEEEcCc----chhhhee
Q 023691 259 FGPIVVHCRY----WENWCIL 275 (278)
Q Consensus 259 ~~PivVHCs~----tGtfial 275 (278)
..+|+|||++ |..+++|
T Consensus 231 ~~~Vlvh~~dGwDrt~q~~sL 251 (353)
T PF06602_consen 231 GSSVLVHCSDGWDRTSQLSSL 251 (353)
T ss_dssp --EEEEECTTSSSHHHHHHHH
T ss_pred CceEEEEcCCCCcccHHHHHH
Confidence 3689999998 7666654
Done!