BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023693
(278 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 67 LLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSL--------DFSG-SNL 117
LL NP A C+ P + + L P++ V I R + +++ D +G +
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241
Query: 118 VNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFE 177
++V + A G +A +L + C NL T GY + AM ++ +
Sbjct: 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGT---GYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 178 HRTYNIFTCNSHSFVAN---------CLNRLC 200
R ++ C ++ +A L+R+C
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMC 330
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 67 LLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSL--------DFSG-SNL 117
LL NP A C+ P + + L P++ V I R + +++ D +G +
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241
Query: 118 VNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFE 177
++V + A G +A +L + C NL T GY + AM ++ +
Sbjct: 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGT---GYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 178 HRTYNIFTCNSHSFVAN---------CLNRLC 200
R ++ C ++ +A L+R+C
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMC 330
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 67 LLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSL--------DFSG-SNL 117
LL NP A C+ P + + L P++ V I R + +++ D +G +
Sbjct: 182 LLRYFNPTGAHASGCIGEDPQGIPNNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDY 241
Query: 118 VNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFE 177
++V + A G +A +L + C NL T GY + AM ++ +
Sbjct: 242 IHVVDLAKGHIAALRKLKEQCGCRIYNLGTGT---GYSVLQMVQAMEKASGKKIPYKVVA 298
Query: 178 HRTYNIFTCNSHSFVAN---------CLNRLC 200
R ++ C ++ +A L+R+C
Sbjct: 299 RREGDVAACYANPSLAQEELGWTAALGLDRMC 330
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,919,848
Number of Sequences: 62578
Number of extensions: 301837
Number of successful extensions: 691
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 690
Number of HSP's gapped (non-prelim): 4
length of query: 278
length of database: 14,973,337
effective HSP length: 98
effective length of query: 180
effective length of database: 8,840,693
effective search space: 1591324740
effective search space used: 1591324740
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.3 bits)