BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 023693
(278 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F4ITL6|RTE1_ARATH Protein REVERSION-TO-ETHYLENE SENSITIVITY1 OS=Arabidopsis thaliana
GN=RTE1 PE=1 SV=1
Length = 250
Score = 333 bits (855), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 151/235 (64%), Positives = 186/235 (79%), Gaps = 7/235 (2%)
Query: 49 AYDIEH----VSSTSKIDHE---LWLLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVG 101
+YD+E VS S I+ + LW L EI+ K ++FPCC+VWTPLPVVSWLAPFIGH+G
Sbjct: 15 SYDVEDRVVSVSIPSIIEADEADLWPLPEIDTKKSKFPCCIVWTPLPVVSWLAPFIGHIG 74
Query: 102 ICREDGVSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGT 161
+CREDGV LDF+GSN +NVD+FA G ARYLQLDR +CC PPN+ GHTCK G++H++FGT
Sbjct: 75 LCREDGVILDFAGSNFINVDDFAFGPPARYLQLDRTKCCLPPNMGGHTCKYGFKHTDFGT 134
Query: 162 AMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALILFKGH 221
A TWD+AL S R FEH+TYNIFTCN HSFVANCLNRLCYGGSM WNM NVA L++ KG
Sbjct: 135 ARTWDNALSSSTRSFEHKTYNIFTCNCHSFVANCLNRLCYGGSMEWNMVNVAILLMIKGK 194
Query: 222 WVNSTSIIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLGTYCVKGLL 276
W+N +S++RSFLP VV LG+++VGWPFLIGL S S LL W+++ TYC K ++
Sbjct: 195 WINGSSVVRSFLPCAVVTSLGVVLVGWPFLIGLSSFSLLLFAWFIIATYCFKNII 249
>sp|Q9SD42|RTH_ARATH Protein RTE1-HOMOLOG OS=Arabidopsis thaliana GN=RTH PE=2 SV=1
Length = 231
Score = 225 bits (574), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 153/233 (65%), Gaps = 9/233 (3%)
Query: 48 TAYDIEHVSSTSKIDHELWLLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDG 107
TA D EH D +I+PK RFPCC+VWTPLP +SWL PFIGHVGICREDG
Sbjct: 4 TATDSEHRMMIGLSDPM-----KIDPKRDRFPCCIVWTPLPFISWLVPFIGHVGICREDG 58
Query: 108 VSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCFPPNLSGH-TCKQGYQHSE--FGTAMT 164
V LDF+G N V VD FA GAV+RY+Q++++ + SG ++ Y+ E T
Sbjct: 59 VILDFAGPNFVCVDNFAFGAVSRYIQINKEMESSRSSSSGMFNGERRYEQEEDSHEKEPT 118
Query: 165 WDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALILFKGHWVN 224
WDDAL+ S ++++H +YNI TCN HSFVAN LNRL S WN+ N+A L+LFKG WVN
Sbjct: 119 WDDALRKSTQEYQHHSYNILTCNCHSFVANNLNRLSI-KSGGWNVVNLATLVLFKGRWVN 177
Query: 225 STSIIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLGTYCVKGLLE 277
T+I++S LP +V +G+L+ GW F+ L LL GW+++GTYC K L++
Sbjct: 178 KTAIVKSLLPPLIVYTIGILLGGWTFIASCSILVVLLTGWFIIGTYCFKKLIQ 230
>sp|Q9H0R3|TM222_HUMAN Transmembrane protein 222 OS=Homo sapiens GN=TMEM222 PE=2 SV=2
Length = 208
Score = 112 bits (279), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 22/176 (12%)
Query: 71 INPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSLDFSGSNLVNVDEFAVGAVAR 130
++ + +RFP C+VWTP+PV++W P IGH+GIC GV DF+G V+ D A G A+
Sbjct: 45 MDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSTGVIRDFAGPYFVSEDNMAFGKPAK 104
Query: 131 YLQLDRKQC-CFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFEHRTYNIFTCNSH 189
Y +LD Q PN WD A+ ++ +++HR +N+ N H
Sbjct: 105 YWKLDPAQVYASGPN-------------------AWDTAVHDASEEYKHRMHNLCCDNCH 145
Query: 190 SFVANCLNRLCYGGSMSWNMTNVAALILFKGHWVNSTSIIRSFLPFTVVACLGLLI 245
S VA LN + Y S +WNM + L G +V+ + ++++LPF ++ LG+++
Sbjct: 146 SHVALALNLMRYNNSTNWNMVTLCFFCLLYGKYVSVGAFVKTWLPFILL--LGIIL 199
>sp|Q8BVA2|TM222_MOUSE Transmembrane protein 222 OS=Mus musculus GN=Tmem222 PE=2 SV=1
Length = 208
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 96/176 (54%), Gaps = 22/176 (12%)
Query: 71 INPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSLDFSGSNLVNVDEFAVGAVAR 130
++ + +RFP C+VWTP+PV++W P IGH+GIC GV DF+G V+ D A G A+
Sbjct: 45 MDVERSRFPYCVVWTPIPVLTWFFPIIGHMGICTSAGVIRDFAGPYFVSEDNMAFGKPAK 104
Query: 131 YLQLDRKQC-CFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQFEHRTYNIFTCNSH 189
+ +LD Q PN WD A+ ++ +++HR +N+ N H
Sbjct: 105 FWKLDPGQVYASGPN-------------------AWDTAVHDASEEYKHRMHNLCCDNCH 145
Query: 190 SFVANCLNRLCYGGSMSWNMTNVAALILFKGHWVNSTSIIRSFLPFTVVACLGLLI 245
S VA LN + Y S +WNM + L G +V+ + ++++LPF ++ LG+++
Sbjct: 146 SHVALALNLMRYNNSTNWNMVTLCCFCLIYGKYVSVGAFVKTWLPFVLL--LGIIL 199
>sp|Q5B5S8|BGLA_EMENI Probable beta-glucosidase A OS=Emericella nidulans (strain FGSC A4
/ ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=bglA
PE=3 SV=2
Length = 863
Score = 32.0 bits (71), Expect = 4.5, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 120 VDEFAVGAVARYLQLDRKQCCFPPNLSGHT-CKQGYQHSE-----FGTAMTWDDALQ 170
VD+ AV +A + ++ R + PPN S T ++GY+H+ +GT + D Q
Sbjct: 333 VDDMAVRVMAAFYKVGRDRLATPPNFSSWTRAEKGYEHASIDGGAYGTVNEFVDVQQ 389
>sp|A0KRB5|MTNC_SHESA Enolase-phosphatase E1 OS=Shewanella sp. (strain ANA-3) GN=mtnC
PE=3 SV=1
Length = 226
Score = 32.0 bits (71), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 56/125 (44%), Gaps = 16/125 (12%)
Query: 102 ICREDGVSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGT 161
IC ++L+ +NL V E + +++ DRK L G KQGY H EF T
Sbjct: 49 ICDTRDIALE-PDANLARVTEI----LQQWVHEDRKATPLK-TLQGLIWKQGYAHGEF-T 101
Query: 162 AMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALILFKGH 221
+ D ++ NR F + I++ +S S A +L + S ++T +F GH
Sbjct: 102 GHIFPDFIEAVNR-FSAQKLRIYSFSSGSVEA---QKLLFSHSDGGDLTE-----MFSGH 152
Query: 222 WVNST 226
+ T
Sbjct: 153 FDTRT 157
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.140 0.469
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,462,592
Number of Sequences: 539616
Number of extensions: 4360836
Number of successful extensions: 11217
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 11209
Number of HSP's gapped (non-prelim): 9
length of query: 278
length of database: 191,569,459
effective HSP length: 116
effective length of query: 162
effective length of database: 128,974,003
effective search space: 20893788486
effective search space used: 20893788486
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)