Query 023693
Match_columns 278
No_of_seqs 121 out of 141
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 05:56:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/023693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3150 Uncharacterized conser 100.0 5.6E-91 1.2E-95 601.8 13.4 164 70-253 18-181 (182)
2 PF05608 DUF778: Protein of un 100.0 2.3E-75 5E-80 490.9 10.1 136 87-222 1-136 (136)
3 PF04970 LRAT: Lecithin retino 94.2 0.051 1.1E-06 43.9 3.5 36 162-197 85-121 (125)
4 KOG2990 C2C2-type Zn-finger pr 85.0 0.8 1.7E-05 44.3 3.1 40 147-195 18-65 (317)
5 PF05903 Peptidase_C97: PPPDE 79.7 1.3 2.8E-05 37.8 2.1 41 161-201 83-123 (151)
6 KOG0324 Uncharacterized conser 74.6 5.8 0.00013 36.9 5.0 54 162-216 87-140 (214)
7 PF06716 DUF1201: Protein of u 69.1 13 0.00027 27.8 4.7 35 228-273 4-38 (54)
8 PF14133 DUF4300: Domain of un 59.2 6.6 0.00014 36.9 2.2 59 58-119 150-214 (250)
9 PF03742 PetN: PetN ; InterPr 58.3 15 0.00033 24.6 3.1 22 243-264 3-24 (29)
10 PRK06266 transcription initiat 54.3 10 0.00022 33.5 2.5 13 126-138 77-89 (178)
11 cd03512 Alkane-hydroxylase Alk 47.5 47 0.001 31.6 5.8 44 225-270 179-222 (314)
12 PF13829 DUF4191: Domain of un 45.8 53 0.0011 30.8 5.7 41 228-268 32-72 (224)
13 PF11255 DUF3054: Protein of u 44.9 27 0.00058 29.0 3.3 24 217-240 18-41 (112)
14 PF07311 Dodecin: Dodecin; In 42.2 16 0.00034 28.2 1.5 23 161-183 12-34 (66)
15 PRK02935 hypothetical protein; 39.4 1.2E+02 0.0025 26.0 6.3 30 221-250 4-33 (110)
16 PF11023 DUF2614: Protein of u 36.9 1.2E+02 0.0026 26.0 6.0 30 221-250 3-32 (114)
17 PF10777 YlaC: Inner membrane 34.9 95 0.0021 27.8 5.3 43 225-268 39-81 (155)
18 PF09746 Membralin: Tumour-ass 34.8 83 0.0018 31.6 5.5 124 124-266 201-360 (375)
19 PF12270 Cyt_c_ox_IV: Cytochro 31.0 1E+02 0.0022 27.0 4.8 30 237-266 99-128 (137)
20 PRK10714 undecaprenyl phosphat 31.0 2E+02 0.0043 27.0 7.2 12 203-214 206-217 (325)
21 PF10058 DUF2296: Predicted in 30.7 26 0.00057 25.7 1.1 19 178-196 18-36 (54)
22 PF12616 DUF3775: Protein of u 27.5 59 0.0013 25.5 2.5 41 161-201 33-75 (75)
23 PF04246 RseC_MucC: Positive r 25.5 3.2E+02 0.007 22.4 6.7 44 226-270 70-117 (135)
24 PF14701 hDGE_amylase: glucano 24.7 76 0.0017 32.2 3.4 32 164-196 378-412 (423)
25 PF11241 DUF3043: Protein of u 24.2 1.6E+02 0.0035 26.5 5.0 19 227-245 76-94 (170)
26 PF04217 DUF412: Protein of un 24.1 1.4E+02 0.0029 26.4 4.4 63 206-268 15-84 (143)
27 PF07787 DUF1625: Protein of u 22.9 1.2E+02 0.0026 27.6 4.1 59 207-267 184-246 (248)
28 KOG4718 Non-SMC (structural ma 22.8 26 0.00056 33.1 -0.3 26 167-193 164-192 (235)
29 PF13387 DUF4105: Domain of un 22.7 55 0.0012 28.2 1.7 38 165-203 114-151 (176)
30 COG4420 Predicted membrane pro 22.6 85 0.0018 29.0 3.0 10 242-251 52-61 (191)
31 PF05708 DUF830: Orthopoxvirus 22.5 1.8E+02 0.0038 23.8 4.6 83 96-201 27-123 (158)
32 COG3360 Uncharacterized conser 22.5 69 0.0015 25.4 2.1 25 159-183 13-37 (71)
33 PRK14747 cytochrome b6-f compl 22.3 13 0.00027 25.0 -1.7 21 244-264 4-24 (29)
34 TIGR01592 holin_SPP1 holin, SP 20.9 1.6E+02 0.0035 23.3 3.9 28 224-251 2-29 (75)
35 KOG4623 Uncharacterized conser 20.6 1.7E+02 0.0037 31.0 5.0 59 161-225 125-203 (611)
No 1
>KOG3150 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.6e-91 Score=601.77 Aligned_cols=164 Identities=57% Similarity=1.134 Sum_probs=158.1
Q ss_pred CCCCCCCCCCceEEcccccchhhhccccceeeeecCCceEEeCCCCeeeccCceeecceeeeeecCCccccCCCCCCCCC
Q 023693 70 EINPKAARFPCCLVWTPLPVVSWLAPFIGHVGICREDGVSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCFPPNLSGHT 149 (278)
Q Consensus 70 ~IDp~~~RFP~CIVWTPIPviSWl~PFIGHmGIc~S~GvI~DFAGpy~Vs~D~maFG~PtrY~qLd~~~~c~P~~~~~~~ 149 (278)
+|||||+||||||||||||++|||+|||||||||+|+|||+||||||||+|||||||+|+|||||||+++|.
T Consensus 18 ~id~k~~rfPyCIVWTPiPvltWl~PfIGHmGic~s~GVIrDFAGpyfV~eDnmaFG~paRY~ql~p~~~~~-------- 89 (182)
T KOG3150|consen 18 EIDPKRSRFPYCIVWTPIPVLTWLFPFIGHMGICRSDGVIRDFAGPYFVSEDNMAFGPPARYIQLDPEKVCG-------- 89 (182)
T ss_pred ccCcccCCCCeEEEecChHHHHHHHhhccceeeecCCCeEEeccCCceeeccccccCCcceeEEeChhheeC--------
Confidence 799999999999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ccCCccccCCCCcccHHHHHHHHHHHhcccccccccCCcHHHHHHHhhccCCCCCCCchHHHHHHHHHhhceeeChhhHH
Q 023693 150 CKQGYQHSEFGTAMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALILFKGHWVNSTSII 229 (278)
Q Consensus 150 ~~~~~~~~~~g~~~~WD~Av~~as~ef~~r~hNLF~~NCHShVA~aLN~m~Y~g~~~WNmv~La~l~~~~GryVs~~~~l 229 (278)
.++.+||+||++|+++||||+||+||||||||||+|||+|+|+||++||||+||++++++||||+.++++
T Consensus 90 ----------~g~~~wD~Av~~as~~y~hr~hNi~cdNCHShVA~aLn~mry~~s~~WNmvnla~~~l~kGk~V~~~~~v 159 (182)
T KOG3150|consen 90 ----------PGARTWDNAVSKASREYKHRTHNIFCDNCHSHVANALNRMRYGGSTEWNMVNLAILLLIKGKWVNGTAFV 159 (182)
T ss_pred ----------CCCchHHHHHHHHHHHhhhcccceeeccHHHHHHHHHHHhhcCCCCCchHHHHHHHHHhhceeeccchHH
Confidence 3678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhHHHHHHHHHHHhhHHHHHH
Q 023693 230 RSFLPFTVVACLGLLIVGWPFLIG 253 (278)
Q Consensus 230 ktwLPF~ii~~igvl~~gw~Fl~~ 253 (278)
||||||++++ ||+++||+|+++
T Consensus 160 ks~LPfv~~l--gI~l~~w~f~~~ 181 (182)
T KOG3150|consen 160 KSWLPFVILL--GIFLVGWPFLIG 181 (182)
T ss_pred HHHhhHHHHH--HHHHHHHHHHhc
Confidence 9999966655 999999999976
No 2
>PF05608 DUF778: Protein of unknown function (DUF778); InterPro: IPR008496 This family consists of several eukaryotic proteins of unknown function.
Probab=100.00 E-value=2.3e-75 Score=490.89 Aligned_cols=136 Identities=57% Similarity=1.132 Sum_probs=134.8
Q ss_pred ccchhhhccccceeeeecCCceEEeCCCCeeeccCceeecceeeeeecCCccccCCCCCCCCCccCCccccCCCCcccHH
Q 023693 87 LPVVSWLAPFIGHVGICREDGVSLDFSGSNLVNVDEFAVGAVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWD 166 (278)
Q Consensus 87 IPviSWl~PFIGHmGIc~S~GvI~DFAGpy~Vs~D~maFG~PtrY~qLd~~~~c~P~~~~~~~~~~~~~~~~~g~~~~WD 166 (278)
||+||||+|||||||||||+|||+||||||+||||+||||+||||||||+++||+|+++++|+|++++++++.|++++||
T Consensus 1 iP~lsWl~PfIGH~GIc~s~GvI~DFaG~y~V~~d~~aFG~p~rY~qld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wD 80 (136)
T PF05608_consen 1 IPVLSWLFPFIGHMGICDSDGVIRDFAGPYFVSVDNMAFGSPTRYWQLDPDKCCSAPNLSGHNCEEGYEHAELGGAESWD 80 (136)
T ss_pred CceeeeehhhccceEeecCCceEEecCCCcEEcCCccccCCceEEEEeCHHHCccccccccccccccccccccccHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccccCCcHHHHHHHhhccCCCCCCCchHHHHHHHHHhhcee
Q 023693 167 DALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALILFKGHW 222 (278)
Q Consensus 167 ~Av~~as~ef~~r~hNLF~~NCHShVA~aLN~m~Y~g~~~WNmv~La~l~~~~Gry 222 (278)
+||++|++|||+|+|||||||||||||+|||+|+|+|+++||||+||++|+++|||
T Consensus 81 ~Av~~a~~~y~~r~yNlf~~NCHSfVA~aLN~m~Y~g~~~WNmv~La~l~~~~Gr~ 136 (136)
T PF05608_consen 81 DAVQKASEEYKHRMYNLFTDNCHSFVANALNRMRYGGSGNWNMVNLAALMFFHGRY 136 (136)
T ss_pred HHHHHHHHHHhhCceeeeccCcHHHHHHHHHhccCCCCCCcHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999998
No 3
>PF04970 LRAT: Lecithin retinol acyltransferase; InterPro: IPR007053 This entry represents a conserved sequence region found in proteins from viruses, bacteria and eukaryotes. It contains a well-conserved NCEHF motif, though its function in these proteins is unknown.; PDB: 2KYT_A 4DOT_A 4FA0_A.
Probab=94.22 E-value=0.051 Score=43.91 Aligned_cols=36 Identities=14% Similarity=0.325 Sum_probs=27.5
Q ss_pred cccHHHHHHHHHHHhc-ccccccccCCcHHHHHHHhh
Q 023693 162 AMTWDDALQLSNRQFE-HRTYNIFTCNSHSFVANCLN 197 (278)
Q Consensus 162 ~~~WD~Av~~as~ef~-~r~hNLF~~NCHShVA~aLN 197 (278)
+..=++++++|.+.-. ..-|||+.+||++||..|..
T Consensus 85 ~~~~~~iv~rA~~~lg~~~~Y~l~~nNCEhFa~~c~t 121 (125)
T PF04970_consen 85 PFPPEEIVERAESRLGKEFEYNLLFNNCEHFATWCRT 121 (125)
T ss_dssp -S-HHHHHHHHHHTTT-EESS---HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCccCCCcCCHHHHHHHHHc
Confidence 3456789999999988 68999999999999999875
No 4
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=85.01 E-value=0.8 Score=44.33 Aligned_cols=40 Identities=20% Similarity=0.350 Sum_probs=31.5
Q ss_pred CCCccCCccccCCCCcccHHHHHHHHHHHhcc--------cccccccCCcHHHHHHH
Q 023693 147 GHTCKQGYQHSEFGTAMTWDDALQLSNRQFEH--------RTYNIFTCNSHSFVANC 195 (278)
Q Consensus 147 ~~~~~~~~~~~~~g~~~~WD~Av~~as~ef~~--------r~hNLF~~NCHShVA~a 195 (278)
.|-...+|+.. .|+++..+.+.+ ..||+-|++||+|+++-
T Consensus 18 ~~gsln~~~g~---------h~lrerarKi~~gilvIRFEMPynIWC~gC~nhIgmG 65 (317)
T KOG2990|consen 18 KHGSLNKYHGT---------HALRERARKIDQGILVIRFEMPYNIWCDGCKNHIGMG 65 (317)
T ss_pred ccCcccccccc---------hhHHHHHHhhccceEEEEEecccchhhccHHHhhhcc
Confidence 56666667432 488988888876 67999999999999975
No 5
>PF05903 Peptidase_C97: PPPDE putative peptidase domain; InterPro: IPR008580 This domain consists of the N-terminal portion of several eukaryotic sequences. The function of this domain is unknown.; PDB: 2WP7_A 3EBQ_A.
Probab=79.72 E-value=1.3 Score=37.75 Aligned_cols=41 Identities=17% Similarity=0.321 Sum_probs=33.0
Q ss_pred CcccHHHHHHHHHHHhcccccccccCCcHHHHHHHhhccCC
Q 023693 161 TAMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCY 201 (278)
Q Consensus 161 ~~~~WD~Av~~as~ef~~r~hNLF~~NCHShVA~aLN~m~Y 201 (278)
+.++-++.|++-+++|....|||+.+||.+|.....+.|.=
T Consensus 83 ~~~~~~~~l~~l~~~~~~~~Y~Ll~~NCNhFs~~l~~~L~g 123 (151)
T PF05903_consen 83 SEEEFEEILRSLSREFTGDSYHLLNRNCNHFSDALCQFLTG 123 (151)
T ss_dssp -HHHHHHHHHHHHTT-SGGG-BTTTBSHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhhccCCcchhhhhhhhHHHHHHHHHhCC
Confidence 44567788888888999999999999999999999888753
No 6
>KOG0324 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.62 E-value=5.8 Score=36.88 Aligned_cols=54 Identities=17% Similarity=0.207 Sum_probs=40.6
Q ss_pred cccHHHHHHHHHHHhcccccccccCCcHHHHHHHhhccCCCCCCCchHHHHHHHH
Q 023693 162 AMTWDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGGSMSWNMTNVAALI 216 (278)
Q Consensus 162 ~~~WD~Av~~as~ef~~r~hNLF~~NCHShVA~aLN~m~Y~g~~~WNmv~La~l~ 216 (278)
.++-++-+++-+++|+-.+|||+..||-+|....--++.=++--+| .-.||-..
T Consensus 87 ~~~v~~~le~L~~ey~G~~YhL~~kNCNHFsn~la~~Ltgk~IP~w-inrLa~~~ 140 (214)
T KOG0324|consen 87 EDDVRRILEELSEEYRGNSYHLLTKNCNHFSNELALQLTGKKIPSW-VNRLARAG 140 (214)
T ss_pred HHHHHHHHHHHHhhcCCceehhhhhccchhHHHHHHHHcCCCccHH-HHHHHHHh
Confidence 3478889999999999999999999999998776555555554556 33444433
No 7
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=69.14 E-value=13 Score=27.77 Aligned_cols=35 Identities=26% Similarity=0.685 Sum_probs=23.0
Q ss_pred HHHHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhhcC
Q 023693 228 IIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLGTYCVK 273 (278)
Q Consensus 228 ~lktwLPF~ii~~igvl~~gw~Fl~~~~~f~~ll~gWF~~gtyc~k 273 (278)
++|+|||+. ..|++-++.|.+...-||+.---.+|
T Consensus 4 vLRs~L~~~-----------F~~lIC~Fl~~~~~F~~F~~Kqilfr 38 (54)
T PF06716_consen 4 VLRSYLLLA-----------FGFLICLFLFCLVVFIWFVYKQILFR 38 (54)
T ss_pred HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 578888864 44555566677777778876544443
No 8
>PF14133 DUF4300: Domain of unknown function (DUF4300)
Probab=59.23 E-value=6.6 Score=36.95 Aligned_cols=59 Identities=24% Similarity=0.373 Sum_probs=31.2
Q ss_pred cccccccccccCCCCCCCCCCCceEEcccccchhhhccccceeeee--cCCceE----EeCCCCeeec
Q 023693 58 TSKIDHELWLLDEINPKAARFPCCLVWTPLPVVSWLAPFIGHVGIC--REDGVS----LDFSGSNLVN 119 (278)
Q Consensus 58 ~~~~~~~~~~~~~IDp~~~RFP~CIVWTPIPviSWl~PFIGHmGIc--~S~GvI----~DFAGpy~Vs 119 (278)
.++|| +.|.--.|..+.++--.-=||..=|==. .=||||+||. +++|.+ +.|.-||-+.
T Consensus 150 ~~~i~-k~wk~rgi~F~~~k~slISV~~h~~d~~--~lFvGH~GVLv~~~dg~LFiEKlaf~ePYQa~ 214 (250)
T PF14133_consen 150 AEKIQ-KYWKERGIKFNNDKASLISVFLHDPDDN--SLFVGHTGVLVPTKDGYLFIEKLAFEEPYQAT 214 (250)
T ss_pred HHHHH-HHHHHcCceeCCCceEEEEEEEEcCCCC--eEEeeeEEEEEEcCCcEEEEEeeCCCCCceeE
Confidence 45555 7777765554444433333443332111 2389999987 455543 3555555443
No 9
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=58.26 E-value=15 Score=24.61 Aligned_cols=22 Identities=32% Similarity=0.887 Sum_probs=19.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHH
Q 023693 243 LLIVGWPFLIGLFSLSFLLLGW 264 (278)
Q Consensus 243 vl~~gw~Fl~~~~~f~~ll~gW 264 (278)
++-.||..+...+.|++-|+.|
T Consensus 3 iv~lgWaal~~~ftfSlalVVW 24 (29)
T PF03742_consen 3 IVSLGWAALMVVFTFSLALVVW 24 (29)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHhccceeEEE
Confidence 4567999999999999999998
No 10
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=54.30 E-value=10 Score=33.50 Aligned_cols=13 Identities=0% Similarity=-0.143 Sum_probs=12.0
Q ss_pred cceeeeeecCCcc
Q 023693 126 GAVARYLQLDRKQ 138 (278)
Q Consensus 126 G~PtrY~qLd~~~ 138 (278)
|+|+.||++|.++
T Consensus 77 Gr~~y~w~l~~~~ 89 (178)
T PRK06266 77 NWYTYTWKPELEK 89 (178)
T ss_pred CcEEEEEEeCHHH
Confidence 9999999998886
No 11
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=47.55 E-value=47 Score=31.62 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=31.2
Q ss_pred hhhHHHHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhh
Q 023693 225 STSIIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLGTY 270 (278)
Q Consensus 225 ~~~~lktwLPF~ii~~igvl~~gw~Fl~~~~~f~~ll~gWF~~gty 270 (278)
.-.+++.++--++++++.+.++||..+..+++.+ ++||+++-+.
T Consensus 179 ~n~~l~~~~~~~a~~~~~~~~~g~~~l~~~l~~~--~~g~~~l~~~ 222 (314)
T cd03512 179 RNEVLRYLALAVALLALAAALGGLAGLLFLLIQA--FYAKSLLELV 222 (314)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3456777777777777788888898887766665 5667766554
No 12
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=45.84 E-value=53 Score=30.76 Aligned_cols=41 Identities=24% Similarity=0.290 Sum_probs=29.4
Q ss_pred HHHHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 023693 228 IIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLG 268 (278)
Q Consensus 228 ~lktwLPF~ii~~igvl~~gw~Fl~~~~~f~~ll~gWF~~g 268 (278)
+.--.+|.++.+.+|+++++|.|.+-+.....+|++=++++
T Consensus 32 l~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~ 72 (224)
T PF13829_consen 32 LGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLS 72 (224)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 34445688889999999999887766666556666666654
No 13
>PF11255 DUF3054: Protein of unknown function (DUF3054); InterPro: IPR021414 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=44.85 E-value=27 Score=29.04 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=16.4
Q ss_pred HhhceeeChhhHHHHhHhHHHHHH
Q 023693 217 LFKGHWVNSTSIIRSFLPFTVVAC 240 (278)
Q Consensus 217 ~~~GryVs~~~~lktwLPF~ii~~ 240 (278)
.-||.=++..+.++|..||++=..
T Consensus 18 ~sHg~~~~~~~~l~Ta~PFl~Gw~ 41 (112)
T PF11255_consen 18 ISHGEALSPAGVLRTAWPFLVGWL 41 (112)
T ss_pred HhcCCCccHHHHHHHHHHHHHHHH
Confidence 456766777888888777765443
No 14
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=42.25 E-value=16 Score=28.20 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=18.7
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 023693 161 TAMTWDDALQLSNRQFEHRTYNI 183 (278)
Q Consensus 161 ~~~~WD~Av~~as~ef~~r~hNL 183 (278)
..++||+|++.|.++=.+-.+|+
T Consensus 12 S~~S~edAv~~Av~~A~kTl~ni 34 (66)
T PF07311_consen 12 SPKSWEDAVQNAVARASKTLRNI 34 (66)
T ss_dssp ESSHHHHHHHHHHHHHHHHSSSE
T ss_pred CCCCHHHHHHHHHHHHhhchhCc
Confidence 44689999999999877777765
No 15
>PRK02935 hypothetical protein; Provisional
Probab=39.43 E-value=1.2e+02 Score=25.96 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=22.8
Q ss_pred eeeChhhHHHHhHhHHHHHHHHHHHhhHHH
Q 023693 221 HWVNSTSIIRSFLPFTVVACLGLLIVGWPF 250 (278)
Q Consensus 221 ryVs~~~~lktwLPF~ii~~igvl~~gw~F 250 (278)
+|-|.-.=+|||--.++++++++.++|--|
T Consensus 4 k~ssKINkiRt~aL~lvfiG~~vMy~Giff 33 (110)
T PRK02935 4 KYSNKINKIRTFALSLVFIGFIVMYLGIFF 33 (110)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 466667778888888888888888888444
No 16
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=36.91 E-value=1.2e+02 Score=26.00 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=20.4
Q ss_pred eeeChhhHHHHhHhHHHHHHHHHHHhhHHH
Q 023693 221 HWVNSTSIIRSFLPFTVVACLGLLIVGWPF 250 (278)
Q Consensus 221 ryVs~~~~lktwLPF~ii~~igvl~~gw~F 250 (278)
+|-|.-.=+|||--.++++++++.++|--|
T Consensus 3 ~~~~KiN~~R~~al~lif~g~~vmy~gi~f 32 (114)
T PF11023_consen 3 KYSSKINKIRTFALSLIFIGMIVMYIGIFF 32 (114)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 455666667777777777777777776433
No 17
>PF10777 YlaC: Inner membrane protein YlaC; InterPro: IPR019713 The extracytoplasmic function (ECF) sigma factors are small regulatory proteins that are quite divergent in sequence relative to most other sigma factors. YlaC, regulated by YlaA, is important in oxidative stress resistance. It contributes to hydrogen peroxide resistance in Bacillus subtilis [].
Probab=34.91 E-value=95 Score=27.85 Aligned_cols=43 Identities=9% Similarity=0.249 Sum_probs=32.3
Q ss_pred hhhHHHHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Q 023693 225 STSIIRSFLPFTVVACLGLLIVGWPFLIGLFSLSFLLLGWYLLG 268 (278)
Q Consensus 225 ~~~~lktwLPF~ii~~igvl~~gw~Fl~~~~~f~~ll~gWF~~g 268 (278)
+.+++-+|+|.++++.-.-.+ ||+-+.|...|.+++.+-+++-
T Consensus 39 ~~~M~~~y~~~~~lm~~spy~-G~~s~~~ftv~fv~m~~~llfD 81 (155)
T PF10777_consen 39 CLAMYAAYLAVAALMYYSPYF-GLGSVWGFTVFFVVMAAFLLFD 81 (155)
T ss_pred HHHHHHHHHHHHHHHHhcchh-hhHHHHHHHHHHHHHHHHHHhh
Confidence 578889999988888766666 6777777777777777766653
No 18
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=34.79 E-value=83 Score=31.58 Aligned_cols=124 Identities=19% Similarity=0.307 Sum_probs=69.7
Q ss_pred eecceeeeeecCC-ccccCCCCCCCCCccCCccccCCCCcccHHHHHHHHHHHh------cccccccccCCcHHHHHHH-
Q 023693 124 AVGAVARYLQLDR-KQCCFPPNLSGHTCKQGYQHSEFGTAMTWDDALQLSNRQF------EHRTYNIFTCNSHSFVANC- 195 (278)
Q Consensus 124 aFG~PtrY~qLd~-~~~c~P~~~~~~~~~~~~~~~~~g~~~~WD~Av~~as~ef------~~r~hNLF~~NCHShVA~a- 195 (278)
..+=|+...+||| +.-|+ +.+++.--.++--.||+.+-.+.+.- +.-+||+.+.-=..||..-
T Consensus 201 ~~nI~~~~v~ldp~~~~Cf---------G~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~n~~t~e~y~fv~~~~ 271 (375)
T PF09746_consen 201 RHNIPVMVVTLDPAKDQCF---------GDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLRNVVTGEHYRFVSMWW 271 (375)
T ss_pred hcCCeEEEEEECCCCCCcc---------CchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeeeecccccceehhhhhh
Confidence 4567888889987 44454 12222221223447898887776643 3478999999888888665
Q ss_pred hhccCCCCCCCchHHHHHHHHHhhceeeChhhHHH------------------H----hHhHHHHHHHHHHHhhHHHHHH
Q 023693 196 LNRLCYGGSMSWNMTNVAALILFKGHWVNSTSIIR------------------S----FLPFTVVACLGLLIVGWPFLIG 253 (278)
Q Consensus 196 LN~m~Y~g~~~WNmv~La~l~~~~GryVs~~~~lk------------------t----wLPF~ii~~igvl~~gw~Fl~~ 253 (278)
+. +++|=+--+..++|. .|.+-++| . ..|-+-++++.+.++|.-+..+
T Consensus 272 ~~------r~sy~~a~~~m~~ft----~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~~p~a~llt~il~lvgm~~~m~ 341 (375)
T PF09746_consen 272 MA------RSSYLAAFFVMLIFT----FSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIFFPAAPLLTVILALVGMEAIMS 341 (375)
T ss_pred hh------ccHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHHHHHHhcCccccccceeeeeehhhHHHHHHHH
Confidence 33 334532222222221 22222222 2 2333334444566677665543
Q ss_pred ------HHHHHHHHHHHHh
Q 023693 254 ------LFSLSFLLLGWYL 266 (278)
Q Consensus 254 ------~~~f~~ll~gWF~ 266 (278)
..+|-++|+.|+.
T Consensus 342 eff~d~~~af~vil~vw~~ 360 (375)
T PF09746_consen 342 EFFNDTTTAFYVILIVWLA 360 (375)
T ss_pred HHhcchhHHHHHHHHHHHH
Confidence 3788999999974
No 19
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=31.04 E-value=1e+02 Score=27.00 Aligned_cols=30 Identities=33% Similarity=0.656 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q 023693 237 VVACLGLLIVGWPFLIGLFSLSFLLLGWYL 266 (278)
Q Consensus 237 ii~~igvl~~gw~Fl~~~~~f~~ll~gWF~ 266 (278)
.++.+|+.++-|.+++|......-++||..
T Consensus 99 al~~lGla~g~Wl~~iG~~~~i~~~~G~vf 128 (137)
T PF12270_consen 99 ALVFLGLAFGWWLILIGAVLLIVAVVGWVF 128 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 355668888889999888888888888853
No 20
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=30.95 E-value=2e+02 Score=27.03 Aligned_cols=12 Identities=8% Similarity=0.357 Sum_probs=8.2
Q ss_pred CCCCchHHHHHH
Q 023693 203 GSMSWNMTNVAA 214 (278)
Q Consensus 203 g~~~WNmv~La~ 214 (278)
|+++|+..++.-
T Consensus 206 G~Sk~~~~~~~~ 217 (325)
T PRK10714 206 GDSKYSFMRLIN 217 (325)
T ss_pred CcCCCCHHHHHH
Confidence 677888776544
No 21
>PF10058 DUF2296: Predicted integral membrane metal-binding protein (DUF2296); InterPro: IPR019273 This domain, found mainly in the eukaryotic lunapark proteins, has no known function [].
Probab=30.70 E-value=26 Score=25.72 Aligned_cols=19 Identities=11% Similarity=0.128 Sum_probs=16.6
Q ss_pred ccccccccCCcHHHHHHHh
Q 023693 178 HRTYNIFTCNSHSFVANCL 196 (278)
Q Consensus 178 ~r~hNLF~~NCHShVA~aL 196 (278)
+..|=|.|-|||+|=..++
T Consensus 18 ~~r~aLIC~~C~~hNGla~ 36 (54)
T PF10058_consen 18 SNRYALICSKCFSHNGLAP 36 (54)
T ss_pred cCceeEECcccchhhcccc
Confidence 5778999999999988776
No 22
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=27.46 E-value=59 Score=25.54 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=29.5
Q ss_pred CcccHHHHHHHHHHHhcccccc--cccCCcHHHHHHHhhccCC
Q 023693 161 TAMTWDDALQLSNRQFEHRTYN--IFTCNSHSFVANCLNRLCY 201 (278)
Q Consensus 161 ~~~~WD~Av~~as~ef~~r~hN--LF~~NCHShVA~aLN~m~Y 201 (278)
++++||+|++.|.++++.+.-. +=..+=+.|....|..++|
T Consensus 33 ~~eew~~a~~~A~~~~~~~ta~YLl~~p~ladyLe~GL~~lG~ 75 (75)
T PF12616_consen 33 EAEEWEEAVAEARERASARTADYLLGTPMLADYLEEGLEALGY 75 (75)
T ss_pred CHHHHHHHHHHHHHhccchHHHHHHcCCcHHHHHHHHHHHcCC
Confidence 5679999999999999775433 3455556677777766654
No 23
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=25.46 E-value=3.2e+02 Score=22.37 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=23.7
Q ss_pred hhHHHHhHhHHHHHHHHHHHhhHHHH----HHHHHHHHHHHHHHhhhhh
Q 023693 226 TSIIRSFLPFTVVACLGLLIVGWPFL----IGLFSLSFLLLGWYLLGTY 270 (278)
Q Consensus 226 ~~~lktwLPF~ii~~igvl~~gw~Fl----~~~~~f~~ll~gWF~~gty 270 (278)
.+++---+|.+.++ +|++++.+.+. ..+.++..+.++++++..|
T Consensus 70 aa~l~Y~lPll~li-~g~~l~~~~~~~e~~~~l~~l~~l~~~~~~~~~~ 117 (135)
T PF04246_consen 70 AAFLVYLLPLLALI-AGAVLGSYLGGSELWAILGGLLGLALGFLILRLF 117 (135)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556755554 56666655443 2335555556666655444
No 24
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=24.73 E-value=76 Score=32.17 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=19.0
Q ss_pred cHHHHHHHHHHHhcccccccccCCcHH---HHHHHh
Q 023693 164 TWDDALQLSNRQFEHRTYNIFTCNSHS---FVANCL 196 (278)
Q Consensus 164 ~WD~Av~~as~ef~~r~hNLF~~NCHS---hVA~aL 196 (278)
=||.-.+ -++.=.+..|=+=-||||| |||.-|
T Consensus 378 LW~~M~~-Yt~~~A~iF~G~RiDNCHSTPlhVaeyl 412 (423)
T PF14701_consen 378 LWKHMKE-YTELMAKIFHGFRIDNCHSTPLHVAEYL 412 (423)
T ss_pred HHHHHHH-HHHHHHHhcCeeeeecCCCCcHHHHHHH
Confidence 4885432 2222233445566799999 787654
No 25
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=24.22 E-value=1.6e+02 Score=26.52 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=12.8
Q ss_pred hHHHHhHhHHHHHHHHHHH
Q 023693 227 SIIRSFLPFTVVACLGLLI 245 (278)
Q Consensus 227 ~~lktwLPF~ii~~igvl~ 245 (278)
++---++|+++++.++.++
T Consensus 76 ~i~e~fmP~alv~lv~~~v 94 (170)
T PF11241_consen 76 NIGEFFMPVALVLLVLSFV 94 (170)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4445567888877666666
No 26
>PF04217 DUF412: Protein of unknown function, DUF412; InterPro: IPR007334 This family consists of bacterial uncharacterised proteins.
Probab=24.09 E-value=1.4e+02 Score=26.43 Aligned_cols=63 Identities=32% Similarity=0.450 Sum_probs=48.3
Q ss_pred CchHHHHHHHHHhhceeeChhhHHHHhHhHHHHHHHH--HHHhhHHHHH-----HHHHHHHHHHHHHhhh
Q 023693 206 SWNMTNVAALILFKGHWVNSTSIIRSFLPFTVVACLG--LLIVGWPFLI-----GLFSLSFLLLGWYLLG 268 (278)
Q Consensus 206 ~WNmv~La~l~~~~GryVs~~~~lktwLPF~ii~~ig--vl~~gw~Fl~-----~~~~f~~ll~gWF~~g 268 (278)
.|-|.+-...+|-..|-+-.+.|-..+.|++.++++. +.+.|+.++- ++++.|+.+=|+.-+|
T Consensus 15 ~WP~~k~L~~~FPE~RvIkaTrfa~k~MP~lAv~s~~~Q~~~~~~~~lp~ai~~aLFalSLPlQGl~WLG 84 (143)
T PF04217_consen 15 TWPMEKELAPIFPENRVIKATRFAIKFMPALAVFSLLWQIAFNGGQALPQAIATALFALSLPLQGLYWLG 84 (143)
T ss_pred HCCCcHHHHccCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 5999999999999999999999999999988887764 3445666553 5566666666665554
No 27
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=22.90 E-value=1.2e+02 Score=27.57 Aligned_cols=59 Identities=24% Similarity=0.628 Sum_probs=33.1
Q ss_pred chHHHHHHHHHhhceee--ChhhHHHHhHhHHH-HHHHHHHHhhHHHHHHH-HHHHHHHHHHHhh
Q 023693 207 WNMTNVAALILFKGHWV--NSTSIIRSFLPFTV-VACLGLLIVGWPFLIGL-FSLSFLLLGWYLL 267 (278)
Q Consensus 207 WNmv~La~l~~~~GryV--s~~~~lktwLPF~i-i~~igvl~~gw~Fl~~~-~~f~~ll~gWF~~ 267 (278)
|-.=-+++++++-|-.. +.-..+..|+|++- ++.+++.++. |++++ +++....++|+..
T Consensus 184 W~lR~~G~llmf~G~~~~~~~l~~l~~~~P~lg~l~~~~~~~~~--~~~s~~lsl~~Ia~aW~~y 246 (248)
T PF07787_consen 184 WILRFIGWLLMFIGFFLLFSPLYTLVDWIPLLGNLVGFGLFLVA--FIISFSLSLLTIALAWLFY 246 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeechhhhHHHHHH--HHHHHHHHHHHHHHhheee
Confidence 44444555555555332 23455667788766 5555666655 33332 5666677788753
No 28
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=22.83 E-value=26 Score=33.10 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=20.7
Q ss_pred HHHHHHHHHhccccc--cc-ccCCcHHHHH
Q 023693 167 DALQLSNRQFEHRTY--NI-FTCNSHSFVA 193 (278)
Q Consensus 167 ~Av~~as~ef~~r~h--NL-F~~NCHShVA 193 (278)
+||.+ .++|=+-+| || -|++||+-|-
T Consensus 164 ralaE-Le~YL~s~y~dnlk~Cn~Ch~LvI 192 (235)
T KOG4718|consen 164 RALAE-LEFYLSSNYADNLKNCNLCHCLVI 192 (235)
T ss_pred HHHHH-HHHHHHhhhHHHHHHHhHhHHHhh
Confidence 56666 457888899 99 8999999874
No 29
>PF13387 DUF4105: Domain of unknown function (DUF4105)
Probab=22.67 E-value=55 Score=28.19 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhcccccccccCCcHHHHHHHhhccCCCC
Q 023693 165 WDDALQLSNRQFEHRTYNIFTCNSHSFVANCLNRLCYGG 203 (278)
Q Consensus 165 WD~Av~~as~ef~~r~hNLF~~NCHShVA~aLN~m~Y~g 203 (278)
.+...+.+.++-+...||++.+||=..+...|+... +|
T Consensus 114 ~~~l~e~~~~~~~~~~Y~f~~~NCat~i~~~l~~~~-~~ 151 (176)
T PF13387_consen 114 FRHLWENANPENRPYRYNFFTDNCATRIRDLLDKAR-PG 151 (176)
T ss_pred HHHHHHhccccccceeehhhhcchHHHHHHHHHHHc-CC
Confidence 454555553444668999999999999999999554 44
No 30
>COG4420 Predicted membrane protein [Function unknown]
Probab=22.55 E-value=85 Score=28.97 Aligned_cols=10 Identities=20% Similarity=0.574 Sum_probs=4.2
Q ss_pred HHHHhhHHHH
Q 023693 242 GLLIVGWPFL 251 (278)
Q Consensus 242 gvl~~gw~Fl 251 (278)
+.+.|.|.|+
T Consensus 52 a~f~Gsw~fi 61 (191)
T COG4420 52 ARFGGSWAFI 61 (191)
T ss_pred HHHcCChHHH
Confidence 3344444444
No 31
>PF05708 DUF830: Orthopoxvirus protein of unknown function (DUF830); PDB: 2IF6_B 3KW0_C.
Probab=22.54 E-value=1.8e+02 Score=23.78 Aligned_cols=83 Identities=16% Similarity=0.207 Sum_probs=43.7
Q ss_pred ccceeeeecCCc----eEEeC---CCCeeeccCceeec-ceeeeeecCCccccCCCCCCCCCccCCccccCCCCcccHHH
Q 023693 96 FIGHVGICREDG----VSLDF---SGSNLVNVDEFAVG-AVARYLQLDRKQCCFPPNLSGHTCKQGYQHSEFGTAMTWDD 167 (278)
Q Consensus 96 FIGHmGIc~S~G----vI~DF---AGpy~Vs~D~maFG-~PtrY~qLd~~~~c~P~~~~~~~~~~~~~~~~~g~~~~WD~ 167 (278)
-.||+||...++ .|.+. .|......+++.-. ...+-++++.. .+.+.=++
T Consensus 27 ~~~HvgI~~~~~~~~~~viea~~~~Gv~~~~l~~~~~~~~~~~V~r~~~~----------------------~~~~~~~~ 84 (158)
T PF05708_consen 27 PYSHVGIVIGDEGQEPYVIEATPGDGVRLEPLSDFLKRNEKIAVYRLKDP----------------------LSEEQRQK 84 (158)
T ss_dssp S--EEEEEEEETTE-EEEEEEETTTCEEEEECHHHHHCCCEEEEEEECCG----------------------TTCHHHHH
T ss_pred CCCEEEEEEecCCCceEEEEeccCCCeEEeeHHHHhcCCceEEEEEECCC----------------------CCHHHHHH
Confidence 479999998887 45555 55555555554432 22222222222 11223344
Q ss_pred HHHHHHHHhcccccccc------cCCcHHHHHHHhhccCC
Q 023693 168 ALQLSNRQFEHRTYNIF------TCNSHSFVANCLNRLCY 201 (278)
Q Consensus 168 Av~~as~ef~~r~hNLF------~~NCHShVA~aLN~m~Y 201 (278)
|++.|. ++-.+.|++. .=.|-.+||.|++.++-
T Consensus 85 ~~~~a~-~~~g~~Y~~~~~~~~~~~yCSelV~~~y~~~gi 123 (158)
T PF05708_consen 85 AAEFAK-SYIGKPYDFNFSLDDDRFYCSELVAEAYKAAGI 123 (158)
T ss_dssp HHHHHH-CCTTS-B-CC-HCCSSSB-HHHHHHHHHHCCT-
T ss_pred HHHHHH-HHcCCCccccccCCCCCEEcHHHHHHHHHHhCC
Confidence 555554 4455677765 33599999999987664
No 32
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=69 Score=25.42 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=20.1
Q ss_pred CCCcccHHHHHHHHHHHhccccccc
Q 023693 159 FGTAMTWDDALQLSNRQFEHRTYNI 183 (278)
Q Consensus 159 ~g~~~~WD~Av~~as~ef~~r~hNL 183 (278)
+...++||+|++.|..+=+.-++||
T Consensus 13 GtSp~S~d~Ai~~Ai~RA~~t~~~l 37 (71)
T COG3360 13 GTSPTSIDAAIANAIARAADTLDNL 37 (71)
T ss_pred ecCCccHHHHHHHHHHHHHhhhhcc
Confidence 3456789999999998887777776
No 33
>PRK14747 cytochrome b6-f complex subunit PetN; Provisional
Probab=22.32 E-value=13 Score=24.97 Aligned_cols=21 Identities=33% Similarity=0.825 Sum_probs=17.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHH
Q 023693 244 LIVGWPFLIGLFSLSFLLLGW 264 (278)
Q Consensus 244 l~~gw~Fl~~~~~f~~ll~gW 264 (278)
+-.||..|...+.|++-|+.|
T Consensus 4 vsl~Waalm~~FtfSlslVVW 24 (29)
T PRK14747 4 LTLGWVSVLVLFTWSIAMVVW 24 (29)
T ss_pred ehhHHHHHHHHHhheeeEEEE
Confidence 446999999999999888777
No 34
>TIGR01592 holin_SPP1 holin, SPP1 family. This model represents one of more than 30 families of phage proteins, all lacking detectable homology with each other, known or believed to act as holins. Holins act in cell lysis by bacteriophage. Members of this family are found in phage PBSX and phage SPP1, among others.
Probab=20.86 E-value=1.6e+02 Score=23.32 Aligned_cols=28 Identities=18% Similarity=0.255 Sum_probs=24.9
Q ss_pred ChhhHHHHhHhHHHHHHHHHHHhhHHHH
Q 023693 224 NSTSIIRSFLPFTVVACLGLLIVGWPFL 251 (278)
Q Consensus 224 s~~~~lktwLPF~ii~~igvl~~gw~Fl 251 (278)
|.+.++|+.+.++.++--++.+.|+..+
T Consensus 2 d~gTiiRti~l~lAlvNq~L~~~G~~pi 29 (75)
T TIGR01592 2 DAGTIVRTILLIIALVNQFLAMKGISPI 29 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence 6788999999999999999999999776
No 35
>KOG4623 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.57 E-value=1.7e+02 Score=31.01 Aligned_cols=59 Identities=14% Similarity=0.189 Sum_probs=44.9
Q ss_pred CcccHHHHHHHHHHHhcc---cccccccCCcHHHHHHHhhccC-----------------CCCCCCchHHHHHHHHHhhc
Q 023693 161 TAMTWDDALQLSNRQFEH---RTYNIFTCNSHSFVANCLNRLC-----------------YGGSMSWNMTNVAALILFKG 220 (278)
Q Consensus 161 ~~~~WD~Av~~as~ef~~---r~hNLF~~NCHShVA~aLN~m~-----------------Y~g~~~WNmv~La~l~~~~G 220 (278)
+-..||+++. +|++ +||- .|.-|.-+|-..|.+-+ |+-+ .-|--.+..+++.++
T Consensus 125 de~rydeeLe----vYR~~LE~mf~-LCs~C~~~V~~~L~e~k~~~~~k~l~Y~lK~~~~~K~p-H~n~~alr~l~~~~q 198 (611)
T KOG4623|consen 125 DEQRYDEELE----VYRKSLEEMFP-LCSECYDSVQDQLDENKYEAKNKVLGYWLKEQLNYKVP-HHNPKALRVLWLLRQ 198 (611)
T ss_pred chhhHHHHHH----HHHHHHHHHcc-cchHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhcCc-cccHHHHHHHHHHhh
Confidence 4457998875 5775 6777 78999999996665433 6665 778888999999999
Q ss_pred eeeCh
Q 023693 221 HWVNS 225 (278)
Q Consensus 221 ryVs~ 225 (278)
++-++
T Consensus 199 ~~rrf 203 (611)
T KOG4623|consen 199 FGRRF 203 (611)
T ss_pred hhhhh
Confidence 98774
Done!