Query 023693
Match_columns 278
No_of_seqs 121 out of 141
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 11:12:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/023693.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/023693hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lkt_A Retinoic acid receptor 95.5 0.0041 1.4E-07 49.4 1.3 33 164-196 88-121 (125)
2 4dpz_X HRAS-like suppressor 2; 95.3 0.012 4E-07 49.1 3.5 35 164-198 88-123 (137)
3 4dot_A Group XVI phospholipase 94.6 0.019 6.5E-07 48.0 3.0 35 163-197 87-122 (140)
4 2wp7_A PPPDE peptidase domain- 83.6 0.6 2.1E-05 40.0 2.7 47 161-207 80-127 (168)
5 1q90_N Cytochrome B6F complex 59.0 12 0.0004 24.6 3.6 23 243-265 5-27 (31)
6 2cc6_A VNG1446H, dodecin; flav 45.9 6.3 0.00022 29.5 0.9 23 161-183 12-34 (68)
7 1vf5_H Protein PET N; photosyn 44.0 13 0.00044 24.0 2.0 22 244-265 4-25 (29)
8 2ux9_A Dodecin; flavoprotein; 43.3 7.3 0.00025 29.2 0.9 23 161-183 14-36 (69)
9 3onr_A Protein transport prote 42.5 7.8 0.00027 29.3 1.0 23 161-183 14-36 (72)
10 2vxa_A Dodecin; flavoprotein, 41.1 8.3 0.00028 29.1 0.9 23 161-183 15-37 (72)
11 2yiz_A Dodecin; flavoprotein, 40.2 13 0.00045 27.8 1.9 23 161-183 14-36 (69)
12 1zrt_D Cytochrome C1; cytochro 20.1 37 0.0013 31.0 1.5 33 162-199 15-48 (258)
No 1
>2lkt_A Retinoic acid receptor responder protein 3; TIG3, human tumor suppressor II family, NLPC/P60, hydrolase; NMR {Homo sapiens}
Probab=95.48 E-value=0.0041 Score=49.36 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHhcc-cccccccCCcHHHHHHHh
Q 023693 164 TWDDALQLSNRQFEH-RTYNIFTCNSHSFVANCL 196 (278)
Q Consensus 164 ~WD~Av~~as~ef~~-r~hNLF~~NCHShVA~aL 196 (278)
.=|+.|++|.+.-.+ ..|||+.+||++||..|.
T Consensus 88 ~~~~iv~rA~~~lg~~~~Y~l~~nNCEHFa~~cr 121 (125)
T 2lkt_A 88 PVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLR 121 (125)
T ss_dssp CHHHHHHHHHHHTTCEECSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCCCcCCCccCHHHHHhhhh
Confidence 347899999988875 479999999999997763
No 2
>4dpz_X HRAS-like suppressor 2; alpha/beta fold, enzyme phospholipid acyltransferase, hydrol transferase; 1.25A {Homo sapiens} PDB: 4fa0_A 2kyt_A
Probab=95.27 E-value=0.012 Score=49.11 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=25.7
Q ss_pred cHHHHHHHHHHHhcc-cccccccCCcHHHHHHHhhc
Q 023693 164 TWDDALQLSNRQFEH-RTYNIFTCNSHSFVANCLNR 198 (278)
Q Consensus 164 ~WD~Av~~as~ef~~-r~hNLF~~NCHShVA~aLN~ 198 (278)
.=|+.|++|.+.-.+ +.|||+.+||++||..|+.-
T Consensus 88 ~~~~iv~rA~~~lG~~~~Y~ll~nNCEHFvt~cryG 123 (137)
T 4dpz_X 88 PSNKIVKRAEELVGQELPYSLTSDNCEHFVNHLRYG 123 (137)
T ss_dssp CHHHHHHHHHHHTTCEEC-----CHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHcCCCcccCcCccChHHHHHHHhcC
Confidence 567899999888776 69999999999999999874
No 3
>4dot_A Group XVI phospholipase A2; alpha/beta fold, phospholipase/acyltransferase, phosphatidyl phosphatidylethanolamine, membrane, hydrolase; 1.96A {Homo sapiens}
Probab=94.58 E-value=0.019 Score=48.04 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHHhcc-cccccccCCcHHHHHHHhh
Q 023693 163 MTWDDALQLSNRQFEH-RTYNIFTCNSHSFVANCLN 197 (278)
Q Consensus 163 ~~WD~Av~~as~ef~~-r~hNLF~~NCHShVA~aLN 197 (278)
..=|+.|+.|.+.-.+ +.|||+.+||++||..|..
T Consensus 87 ~~~~~iv~rA~~~lG~e~~Y~ll~nNCEHFvt~cr~ 122 (140)
T 4dot_A 87 LPCSKIIQRAEELVGQEVLYKLTSENCEHFVNELRY 122 (140)
T ss_dssp CCHHHHHHHHHHTTTCBCSSCCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccccccccChHHHHHHHhc
Confidence 3467899999887775 7999999999999999876
No 4
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=83.58 E-value=0.6 Score=40.04 Aligned_cols=47 Identities=21% Similarity=0.264 Sum_probs=38.5
Q ss_pred CcccHHHHHHHHHHH-hcccccccccCCcHHHHHHHhhccCCCCCCCc
Q 023693 161 TAMTWDDALQLSNRQ-FEHRTYNIFTCNSHSFVANCLNRLCYGGSMSW 207 (278)
Q Consensus 161 ~~~~WD~Av~~as~e-f~~r~hNLF~~NCHShVA~aLN~m~Y~g~~~W 207 (278)
+.++-++.|++-+++ |.-..|||+..||.+|...+-..|.=++--+|
T Consensus 80 ~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L~gk~IP~w 127 (168)
T 2wp7_A 80 TEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFLTGRKIPSY 127 (168)
T ss_dssp CHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHHHSCCCCHH
T ss_pred CHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHhcCCCCcHH
Confidence 445788899998998 99999999999999999988877764444445
No 5
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=58.97 E-value=12 Score=24.55 Aligned_cols=23 Identities=30% Similarity=0.691 Sum_probs=20.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHH
Q 023693 243 LLIVGWPFLIGLFSLSFLLLGWY 265 (278)
Q Consensus 243 vl~~gw~Fl~~~~~f~~ll~gWF 265 (278)
++-.||..|...+.|++-|+.|=
T Consensus 5 ivsl~WaalmvvfTfSlslVVWG 27 (31)
T 1q90_N 5 IVQIGWAATCVMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHhheeeEEEEEe
Confidence 45679999999999999999993
No 6
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=45.93 E-value=6.3 Score=29.49 Aligned_cols=23 Identities=13% Similarity=0.092 Sum_probs=18.9
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 023693 161 TAMTWDDALQLSNRQFEHRTYNI 183 (278)
Q Consensus 161 ~~~~WD~Av~~as~ef~~r~hNL 183 (278)
..++||+|++.|.++=.+-.+|+
T Consensus 12 S~~S~edAi~nAi~~AskTl~ni 34 (68)
T 2cc6_A 12 SEESFTAAADDAIDRAEDTLDNV 34 (68)
T ss_dssp ESSCHHHHHHHHHHHHHHHCSCE
T ss_pred CCCCHHHHHHHHHHHHHhcccCC
Confidence 45699999999999877777775
No 7
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=44.03 E-value=13 Score=24.01 Aligned_cols=22 Identities=27% Similarity=0.670 Sum_probs=19.1
Q ss_pred HHhhHHHHHHHHHHHHHHHHHH
Q 023693 244 LIVGWPFLIGLFSLSFLLLGWY 265 (278)
Q Consensus 244 l~~gw~Fl~~~~~f~~ll~gWF 265 (278)
+-.||..+...+.|++-|+.|=
T Consensus 4 vsl~WaalmvvftfSlslVVWG 25 (29)
T 1vf5_H 4 DVLGWVALLVVFTWSIAMVVWG 25 (29)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhheeeeEEEEe
Confidence 3469999999999999999993
No 8
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=43.32 E-value=7.3 Score=29.21 Aligned_cols=23 Identities=9% Similarity=0.078 Sum_probs=18.8
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 023693 161 TAMTWDDALQLSNRQFEHRTYNI 183 (278)
Q Consensus 161 ~~~~WD~Av~~as~ef~~r~hNL 183 (278)
..++||+|++.|.++=.+-.+|+
T Consensus 14 S~~S~edAi~nAi~~AskTl~ni 36 (69)
T 2ux9_A 14 SEEGLEAAIQAALARARKTLRHL 36 (69)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCHHHHHHHHHHHHHhcccCC
Confidence 45689999999999877777765
No 9
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=42.47 E-value=7.8 Score=29.30 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=18.6
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 023693 161 TAMTWDDALQLSNRQFEHRTYNI 183 (278)
Q Consensus 161 ~~~~WD~Av~~as~ef~~r~hNL 183 (278)
..++||+|++.|.++=.+-.+|+
T Consensus 14 S~~S~edAi~nAi~~AskTl~ni 36 (72)
T 3onr_A 14 SPTSWEQAAAEAVQRARDSVDDI 36 (72)
T ss_dssp ESSCHHHHHHHHHHHHHHHCSCC
T ss_pred CCCCHHHHHHHHHHHHHhcccCC
Confidence 45689999999998877766665
No 10
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=41.05 E-value=8.3 Score=29.13 Aligned_cols=23 Identities=4% Similarity=0.020 Sum_probs=18.7
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 023693 161 TAMTWDDALQLSNRQFEHRTYNI 183 (278)
Q Consensus 161 ~~~~WD~Av~~as~ef~~r~hNL 183 (278)
..++||+|++.|.++=.+-.+|+
T Consensus 15 S~~S~edAi~nAi~~AskTl~ni 37 (72)
T 2vxa_A 15 SPNGIEEAVNNAIARAGETLRHL 37 (72)
T ss_dssp ESSCHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCHHHHHHHHHHHHHhhccCC
Confidence 45689999999998877777765
No 11
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=40.16 E-value=13 Score=27.83 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=18.8
Q ss_pred CcccHHHHHHHHHHHhccccccc
Q 023693 161 TAMTWDDALQLSNRQFEHRTYNI 183 (278)
Q Consensus 161 ~~~~WD~Av~~as~ef~~r~hNL 183 (278)
..++||+|++.|.++=.+-++|+
T Consensus 14 S~~S~edAi~nAi~~AskTl~ni 36 (69)
T 2yiz_A 14 SPDGVDAAIQGGLARAAQTMRAL 36 (69)
T ss_dssp ETTCHHHHHHHHHHHHHHHCCCE
T ss_pred CCCCHHHHHHHHHHHHHhcccCC
Confidence 45689999999999877777775
No 12
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=20.10 E-value=37 Score=30.95 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=22.3
Q ss_pred cccHHH-HHHHHHHHhcccccccccCCcHHHHHHHhhcc
Q 023693 162 AMTWDD-ALQLSNRQFEHRTYNIFTCNSHSFVANCLNRL 199 (278)
Q Consensus 162 ~~~WD~-Av~~as~ef~~r~hNLF~~NCHShVA~aLN~m 199 (278)
-.++|. +|+++-+.|++ -|-+|||---...++|
T Consensus 15 ~~~~D~asLqRG~qvy~e-----vCa~CHsl~~v~yr~L 48 (258)
T 1zrt_D 15 FGKYDQAQLRRGFQVYNE-----VCSACHGMKFVPIRTL 48 (258)
T ss_dssp SCCCCHHHHHHHHHHHHH-----TTTTTCCCTTCBGGGS
T ss_pred CCCcCHHHHHHHHHHHHH-----HHhhcCCchhhhHHHH
Confidence 345555 49999999987 6999999433333333
Done!